Query 014826
Match_columns 418
No_of_seqs 139 out of 2407
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-31 5.7E-36 274.1 14.2 372 9-416 284-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-29 6E-34 259.1 15.2 345 16-396 267-695 (768)
3 4eco_A Uncharacterized protein 100.0 2.2E-28 7.5E-33 245.5 17.4 323 10-395 239-601 (636)
4 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-28 2.3E-32 237.0 20.2 135 8-155 13-150 (520)
5 3v47_A TOLL-like receptor 5B a 100.0 1.8E-28 6.3E-33 237.0 15.7 347 8-395 23-409 (455)
6 4eco_A Uncharacterized protein 100.0 1.3E-28 4.3E-33 247.3 14.9 324 10-393 198-578 (636)
7 4ecn_A Leucine-rich repeat pro 100.0 5.9E-28 2E-32 247.0 19.6 324 10-395 481-841 (876)
8 4fmz_A Internalin; leucine ric 99.9 3.9E-27 1.3E-31 219.5 19.0 307 13-393 39-345 (347)
9 2id5_A Lingo-1, leucine rich r 99.9 2.2E-27 7.5E-32 230.8 17.4 305 8-393 24-332 (477)
10 4ecn_A Leucine-rich repeat pro 99.9 2.6E-27 8.8E-32 242.3 18.2 328 10-393 440-818 (876)
11 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.1E-27 2.8E-31 231.4 19.4 135 8-155 44-181 (562)
12 3o6n_A APL1; leucine-rich repe 99.9 5.4E-27 1.8E-31 222.1 17.0 308 16-395 43-353 (390)
13 3t6q_A CD180 antigen; protein- 99.9 9.2E-27 3.1E-31 233.2 18.6 177 198-395 274-463 (606)
14 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-27 8.7E-32 237.3 14.4 121 13-139 51-173 (606)
15 3t6q_A CD180 antigen; protein- 99.9 1.2E-26 4E-31 232.4 18.7 351 11-394 50-489 (606)
16 3j0a_A TOLL-like receptor 5; m 99.9 4.2E-26 1.4E-30 236.4 23.1 90 202-303 266-356 (844)
17 3vq2_A TLR4, TOLL-like recepto 99.9 2E-26 6.8E-31 230.8 18.5 141 8-156 24-166 (606)
18 2z81_A CD282 antigen, TOLL-lik 99.9 8.7E-27 3E-31 230.6 15.2 171 200-395 332-511 (549)
19 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-25 3.9E-30 216.5 21.6 310 8-393 32-351 (457)
20 1o6v_A Internalin A; bacterial 99.9 8.3E-26 2.9E-30 218.8 20.7 320 14-394 64-388 (466)
21 2z63_A TOLL-like receptor 4, v 99.9 8.3E-27 2.8E-31 231.8 12.6 127 13-145 47-175 (570)
22 3oja_B Anopheles plasmodium-re 99.9 3.1E-26 1.1E-30 228.5 16.7 308 16-395 49-359 (597)
23 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-26 5.9E-31 228.5 14.2 141 8-156 18-161 (549)
24 3v47_A TOLL-like receptor 5B a 99.9 2.5E-26 8.4E-31 222.1 14.4 324 10-374 46-412 (455)
25 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-26 1.5E-30 231.3 16.6 348 11-407 239-635 (680)
26 1ziw_A TOLL-like receptor 3; i 99.9 2.3E-25 7.8E-30 226.1 18.7 141 8-156 17-158 (680)
27 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-25 6.2E-30 219.7 16.5 124 21-156 3-128 (520)
28 4fmz_A Internalin; leucine ric 99.9 5.9E-25 2E-29 204.7 19.0 288 8-368 57-344 (347)
29 3j0a_A TOLL-like receptor 5; m 99.9 3E-25 1E-29 230.0 17.9 337 8-392 17-392 (844)
30 2z63_A TOLL-like receptor 4, v 99.9 1.1E-25 3.9E-30 223.7 14.0 140 8-156 20-162 (570)
31 3o6n_A APL1; leucine-rich repe 99.9 1.3E-25 4.3E-30 212.7 12.4 291 8-368 58-350 (390)
32 1o6v_A Internalin A; bacterial 99.9 1.9E-24 6.5E-29 209.3 19.8 318 15-393 43-365 (466)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.5E-25 2.2E-29 217.7 16.4 348 16-394 29-510 (562)
34 2id5_A Lingo-1, leucine rich r 99.9 9.1E-25 3.1E-29 212.3 14.2 262 11-301 49-312 (477)
35 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-24 1.8E-28 205.0 18.1 291 8-374 55-355 (457)
36 3oja_B Anopheles plasmodium-re 99.9 7.3E-25 2.5E-29 218.6 12.5 290 9-368 65-356 (597)
37 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-24 4.9E-29 198.9 10.8 252 18-298 50-305 (313)
38 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-24 5.6E-29 217.9 10.6 149 231-406 439-591 (635)
39 2ft3_A Biglycan; proteoglycan, 99.9 5.3E-24 1.8E-28 196.9 13.2 294 19-392 34-331 (332)
40 1z7x_W Ribonuclease inhibitor; 99.9 1.9E-25 6.4E-30 216.2 2.3 349 13-394 23-411 (461)
41 1xku_A Decorin; proteoglycan, 99.9 1.2E-23 4.2E-28 194.3 14.1 294 19-391 32-329 (330)
42 3ogk_B Coronatine-insensitive 99.9 2.5E-24 8.6E-29 214.9 8.3 326 20-392 140-524 (592)
43 4fcg_A Uncharacterized protein 99.9 1E-22 3.5E-27 187.6 17.7 233 71-392 80-312 (328)
44 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-24 9.4E-29 197.0 6.6 108 48-155 50-161 (313)
45 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-23 1.9E-27 190.1 14.5 283 8-368 46-331 (332)
46 1xku_A Decorin; proteoglycan, 99.9 1.1E-22 3.6E-27 188.0 16.4 284 8-367 44-329 (330)
47 4fcg_A Uncharacterized protein 99.9 1.6E-23 5.6E-28 193.0 9.4 223 47-295 80-312 (328)
48 4g8a_A TOLL-like receptor 4; l 99.9 6.5E-22 2.2E-26 198.9 15.2 139 9-156 45-186 (635)
49 3ogk_B Coronatine-insensitive 99.9 1.3E-22 4.6E-27 202.4 7.2 333 16-392 110-499 (592)
50 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-23 8.1E-28 201.5 0.3 346 10-393 48-439 (461)
51 2z80_A TOLL-like receptor 2, v 99.9 2E-21 6.9E-26 181.2 13.3 259 8-295 44-312 (353)
52 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-22 3.2E-26 177.8 10.3 207 48-276 32-240 (285)
53 2z80_A TOLL-like receptor 2, v 99.9 6.2E-22 2.1E-26 184.6 7.9 278 15-395 28-315 (353)
54 2z66_A Variable lymphocyte rec 99.8 3.2E-21 1.1E-25 176.2 10.5 234 8-295 20-259 (306)
55 3zyi_A Leucine-rich repeat-con 99.8 7E-21 2.4E-25 183.5 12.8 224 48-295 75-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 8.2E-21 2.8E-25 182.4 12.6 224 48-295 64-290 (440)
57 2p1m_B Transport inhibitor res 99.8 6.4E-22 2.2E-26 197.6 5.1 132 14-150 101-242 (594)
58 1jl5_A Outer protein YOPM; leu 99.8 8.6E-20 2.9E-24 175.4 18.7 300 18-394 91-409 (454)
59 1jl5_A Outer protein YOPM; leu 99.8 7.9E-21 2.7E-25 182.6 11.4 99 17-129 10-121 (454)
60 2z66_A Variable lymphocyte rec 99.8 1E-20 3.5E-25 172.8 8.6 242 21-335 10-258 (306)
61 3zyi_A Leucine-rich repeat-con 99.8 5.4E-20 1.8E-24 177.3 13.1 244 49-335 55-300 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 6.7E-20 2.3E-24 176.1 13.2 243 49-334 44-288 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-20 6.7E-25 171.7 8.3 268 19-341 11-278 (317)
64 2p1m_B Transport inhibitor res 99.8 1E-21 3.5E-26 196.1 -0.4 142 12-153 60-221 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.8 4.2E-21 1.4E-25 176.2 3.8 264 48-395 10-276 (317)
66 1wwl_A Monocyte differentiatio 99.8 3E-21 1E-25 176.7 1.7 252 13-295 38-307 (312)
67 1ozn_A Reticulon 4 receptor; N 99.8 8.9E-20 3.1E-24 164.8 11.1 220 51-295 14-236 (285)
68 3g06_A SSPH2 (leucine-rich rep 99.8 6.7E-19 2.3E-23 174.5 17.0 257 19-394 41-297 (622)
69 1wwl_A Monocyte differentiatio 99.8 1.4E-20 4.7E-25 172.4 2.8 202 45-295 40-264 (312)
70 3oja_A Leucine-rich immune mol 99.8 1.7E-20 5.9E-25 182.0 3.1 75 49-129 35-109 (487)
71 2ast_B S-phase kinase-associat 99.8 1.1E-19 3.7E-24 168.2 5.9 227 47-335 46-282 (336)
72 2ca6_A RAN GTPase-activating p 99.8 1.4E-19 4.7E-24 170.9 5.8 252 9-275 23-317 (386)
73 3oja_A Leucine-rich immune mol 99.8 1.4E-18 4.7E-23 168.6 10.5 238 68-389 30-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.8 1.8E-18 6.2E-23 155.4 10.3 216 9-276 21-239 (276)
75 2ast_B S-phase kinase-associat 99.7 5.1E-18 1.7E-22 157.0 11.3 129 18-153 70-205 (336)
76 1p9a_G Platelet glycoprotein I 99.7 5.9E-18 2E-22 152.9 11.3 131 14-155 6-136 (290)
77 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 4.1E-22 149.6 12.4 204 44-302 37-240 (272)
78 3g06_A SSPH2 (leucine-rich rep 99.7 2.9E-17 1E-21 162.8 16.2 123 7-156 52-174 (622)
79 1h6u_A Internalin H; cell adhe 99.7 1.3E-17 4.3E-22 152.2 12.1 194 47-301 40-233 (308)
80 2ca6_A RAN GTPase-activating p 99.7 3.2E-19 1.1E-23 168.3 1.3 246 40-295 24-314 (386)
81 2o6q_A Variable lymphocyte rec 99.7 2.2E-17 7.4E-22 147.8 12.2 125 19-153 17-143 (270)
82 4glp_A Monocyte differentiatio 99.7 3.2E-17 1.1E-21 149.7 11.7 229 48-295 64-305 (310)
83 3rfs_A Internalin B, repeat mo 99.7 7.1E-17 2.4E-21 144.6 13.6 196 49-295 20-216 (272)
84 2z62_A TOLL-like receptor 4, v 99.7 1E-16 3.5E-21 143.9 12.6 205 48-295 28-235 (276)
85 3goz_A Leucine-rich repeat-con 99.7 3.1E-18 1.1E-22 160.1 2.1 229 23-295 3-264 (362)
86 2o6q_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 138.8 15.0 197 49-295 17-216 (270)
87 4glp_A Monocyte differentiatio 99.7 2.9E-16 9.9E-21 143.4 13.2 205 72-295 64-283 (310)
88 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 141.5 14.8 170 68-295 37-206 (308)
89 2xwt_C Thyrotropin receptor; s 99.7 4.8E-16 1.7E-20 136.4 13.7 215 75-393 14-238 (239)
90 1p9a_G Platelet glycoprotein I 99.7 5.9E-16 2E-20 139.8 14.1 197 69-334 7-204 (290)
91 2xwt_C Thyrotropin receptor; s 99.7 6.1E-17 2.1E-21 142.1 7.3 195 49-295 32-237 (239)
92 3goz_A Leucine-rich repeat-con 99.7 4.1E-17 1.4E-21 152.4 6.1 246 10-295 14-295 (362)
93 3m19_A Variable lymphocyte rec 99.6 3E-15 1E-19 132.3 10.9 43 233-275 151-193 (251)
94 1h6t_A Internalin B; cell adhe 99.6 3E-15 1E-19 135.3 10.9 99 47-152 45-143 (291)
95 3m19_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 129.6 13.4 176 72-295 14-190 (251)
96 4ay9_X Follicle-stimulating ho 99.6 4.2E-15 1.4E-19 138.0 10.9 83 73-155 31-116 (350)
97 1h6t_A Internalin B; cell adhe 99.6 1.5E-14 5.1E-19 130.7 11.3 129 13-156 41-169 (291)
98 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.4E-19 143.7 11.0 173 44-275 39-211 (605)
99 4ay9_X Follicle-stimulating ho 99.5 7.9E-14 2.7E-18 129.5 15.0 235 75-365 12-254 (350)
100 4ezg_A Putative uncharacterize 99.5 1.1E-14 3.6E-19 123.7 7.9 133 13-156 39-172 (197)
101 4ezg_A Putative uncharacterize 99.5 1.8E-14 6.3E-19 122.3 9.3 138 7-156 56-194 (197)
102 2v9t_B SLIT homolog 2 protein 99.5 1.4E-14 4.7E-19 125.2 7.5 141 8-156 24-165 (220)
103 1m9s_A Internalin B; cell inva 99.5 3.7E-14 1.3E-18 140.4 11.5 175 13-252 38-212 (605)
104 3e6j_A Variable lymphocyte rec 99.5 2.8E-14 9.6E-19 124.1 8.3 140 8-156 32-172 (229)
105 1xeu_A Internalin C; cellular 99.5 2E-14 7E-19 127.7 6.3 60 233-295 124-183 (263)
106 2o6s_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 120.7 8.2 141 8-156 20-161 (208)
107 1dce_A Protein (RAB geranylger 99.5 1.4E-15 4.8E-20 149.6 -1.7 130 15-154 346-497 (567)
108 2o6s_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 121.4 6.7 107 47-154 27-135 (208)
109 2v70_A SLIT-2, SLIT homolog 2 99.5 5.4E-14 1.8E-18 121.5 6.9 142 8-156 24-166 (220)
110 2ell_A Acidic leucine-rich nuc 99.4 7.7E-14 2.6E-18 115.2 6.2 132 17-156 23-160 (168)
111 2je0_A Acidic leucine-rich nuc 99.4 6.6E-14 2.2E-18 113.1 5.6 128 16-151 15-148 (149)
112 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.2E-18 113.1 7.1 132 13-155 14-152 (176)
113 3cvr_A Invasion plasmid antige 99.4 4.1E-13 1.4E-17 131.6 9.5 95 48-156 59-153 (571)
114 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4.1E-17 128.3 12.3 175 72-335 59-240 (571)
115 2ell_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 111.4 6.6 120 8-137 39-164 (168)
116 1xeu_A Internalin C; cellular 99.4 4.6E-13 1.6E-17 119.0 8.1 125 14-154 37-161 (263)
117 2v9t_B SLIT homolog 2 protein 99.4 2.9E-12 9.9E-17 110.6 12.0 78 75-154 14-91 (220)
118 3sb4_A Hypothetical leucine ri 99.4 1.4E-12 4.9E-17 119.8 10.7 299 5-387 10-327 (329)
119 2xot_A Amphoterin-induced prot 99.4 8E-13 2.7E-17 123.2 7.9 126 21-155 21-148 (361)
120 2je0_A Acidic leucine-rich nuc 99.4 6.6E-13 2.3E-17 107.2 6.3 112 8-128 32-149 (149)
121 3e6j_A Variable lymphocyte rec 99.3 1.6E-12 5.6E-17 112.9 8.6 127 19-156 20-148 (229)
122 3sb4_A Hypothetical leucine ri 99.3 3.2E-12 1.1E-16 117.5 9.7 267 47-392 24-308 (329)
123 2v70_A SLIT-2, SLIT homolog 2 99.3 2.3E-12 7.8E-17 111.2 7.7 128 20-156 13-142 (220)
124 1w8a_A SLIT protein; signaling 99.3 2E-12 6.9E-17 109.1 5.5 127 21-156 11-139 (192)
125 4b8c_D Glucose-repressible alc 99.3 6E-13 2E-17 135.0 1.9 113 41-156 217-329 (727)
126 2xot_A Amphoterin-induced prot 99.3 3.7E-12 1.3E-16 118.7 6.8 140 8-156 31-176 (361)
127 1w8a_A SLIT protein; signaling 99.2 4.9E-12 1.7E-16 106.7 5.7 120 6-134 19-141 (192)
128 2wfh_A SLIT homolog 2 protein 99.2 1.1E-11 3.9E-16 104.4 6.7 126 21-156 13-139 (193)
129 1ds9_A Outer arm dynein; leuci 99.2 5.7E-14 1.9E-18 119.3 -8.3 112 40-156 40-153 (198)
130 2wfh_A SLIT homolog 2 protein 99.2 2.1E-11 7E-16 102.9 7.6 116 7-132 22-139 (193)
131 4b8c_D Glucose-repressible alc 99.2 1.6E-11 5.3E-16 124.6 7.9 123 10-141 216-338 (727)
132 1dce_A Protein (RAB geranylger 99.2 2.3E-11 7.9E-16 119.6 8.1 139 7-156 398-546 (567)
133 2o6r_A Variable lymphocyte rec 99.2 4.2E-11 1.4E-15 99.5 7.4 129 19-156 8-137 (177)
134 2o6r_A Variable lymphocyte rec 99.1 4.5E-11 1.5E-15 99.3 6.4 119 7-134 19-139 (177)
135 4fs7_A Uncharacterized protein 99.1 5E-10 1.7E-14 105.5 14.2 309 13-391 66-376 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.1 3E-11 1E-15 100.3 5.0 114 8-131 32-152 (176)
137 1ds9_A Outer arm dynein; leuci 99.0 3.1E-12 1E-16 108.5 -5.8 109 44-156 14-128 (198)
138 4fdw_A Leucine rich hypothetic 99.0 2.5E-08 8.6E-13 93.7 17.7 261 46-392 111-381 (401)
139 3un9_A NLR family member X1; l 99.0 6E-10 2E-14 103.7 6.3 28 231-258 233-260 (372)
140 3g39_A Variable lymphocyte rec 99.0 5.7E-10 1.9E-14 91.9 5.4 103 19-131 10-114 (170)
141 2r9u_A Variable lymphocyte rec 98.9 7.5E-10 2.6E-14 91.5 5.5 102 20-131 14-117 (174)
142 4fdw_A Leucine rich hypothetic 98.9 3.1E-09 1.1E-13 99.9 10.3 62 232-295 295-356 (401)
143 3un9_A NLR family member X1; l 98.9 5.8E-10 2E-14 103.8 5.2 161 17-185 71-250 (372)
144 3g39_A Variable lymphocyte rec 98.9 1.8E-09 6.3E-14 88.8 7.2 104 49-156 10-115 (170)
145 2r9u_A Variable lymphocyte rec 98.9 2.9E-09 9.9E-14 88.0 7.1 103 50-156 14-118 (174)
146 4fs7_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 92.4 15.6 287 42-391 65-353 (394)
147 1io0_A Tropomodulin; LRR prote 98.7 1.5E-08 5.2E-13 84.5 6.2 111 14-129 32-161 (185)
148 4gt6_A Cell surface protein; l 98.7 3.1E-07 1E-11 86.3 14.6 108 256-392 260-368 (394)
149 4gt6_A Cell surface protein; l 98.6 1.4E-07 4.7E-12 88.8 10.1 314 13-391 58-388 (394)
150 2ifg_A High affinity nerve gro 98.6 4.1E-08 1.4E-12 90.6 6.2 101 22-131 12-115 (347)
151 3e4g_A ATP synthase subunit S, 98.6 8.5E-08 2.9E-12 78.1 6.5 98 7-110 50-154 (176)
152 2ifg_A High affinity nerve gro 98.6 8.7E-08 3E-12 88.4 7.2 102 51-156 11-116 (347)
153 1io0_A Tropomodulin; LRR prote 98.5 1E-07 3.6E-12 79.3 6.6 118 38-155 26-163 (185)
154 3e4g_A ATP synthase subunit S, 98.5 1.7E-08 5.8E-13 82.2 1.6 94 284-397 61-155 (176)
155 2ra8_A Uncharacterized protein 98.5 7.6E-08 2.6E-12 88.9 4.0 169 10-184 131-317 (362)
156 4h09_A Hypothetical leucine ri 98.4 1.1E-06 3.7E-11 82.1 11.3 82 14-105 42-123 (379)
157 2ra8_A Uncharacterized protein 98.3 2.4E-07 8.4E-12 85.5 4.1 65 199-272 276-341 (362)
158 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.8E-11 75.4 4.9 80 69-150 167-258 (267)
159 4h09_A Hypothetical leucine ri 98.0 4E-05 1.4E-09 71.3 11.7 80 44-129 42-123 (379)
160 3rw6_A Nuclear RNA export fact 97.9 5.4E-06 1.9E-10 72.6 4.2 62 93-156 168-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00012 4.2E-09 60.6 7.2 90 39-128 32-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00043 1.5E-08 57.3 6.9 112 14-129 37-167 (197)
163 3rfe_A Platelet glycoprotein I 92.5 0.22 7.4E-06 38.0 5.6 51 76-129 12-65 (130)
164 3rfe_A Platelet glycoprotein I 90.4 0.29 1E-05 37.2 4.3 56 52-109 12-69 (130)
165 2lz0_A Uncharacterized protein 41.9 18 0.00063 25.6 2.9 37 233-270 16-52 (100)
166 2lz0_A Uncharacterized protein 37.0 45 0.0015 23.5 4.3 40 327-366 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.7e-31 Score=274.08 Aligned_cols=372 Identities=19% Similarity=0.159 Sum_probs=252.4
Q ss_pred CCCccccc-cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHh-hccccccceeeeCCCCCc-
Q 014826 9 SLPVSTRR-VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRN-IKKLVHLRYLNLRFPKIV- 85 (418)
Q Consensus 9 ~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~- 85 (418)
.+|..+.+ +++|++|++++|. +++ ..+..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~-----l~~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNH-----FYG-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSE-----EEE-CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred ccCHHHHhhcCcCCEEECcCCc-----CCC-ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 57777766 4999999999997 553 35666889999999999999876666654 888999999999999976
Q ss_pred cCchhhhcCC-CCcEEeccCccCcccCChhhhc--cccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCc
Q 014826 86 KLPETLCELY-NLEKLDISYCFNLKELPEGIGK--LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR 162 (418)
Q Consensus 86 ~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 162 (418)
.+|..+..++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++.+|....
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~----- 432 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG----- 432 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-----
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-----
Confidence 7888888887 8999999999877777777766 7889999999997777888889899999999988876541
Q ss_pred cccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEE
Q 014826 163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKEL 242 (418)
Q Consensus 163 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 242 (418)
.....+..+++|+.+++........ ....+..+++|+.|++++|... ...+..+..+++|++|
T Consensus 433 --~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~-----------~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 433 --TIPSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLT-----------GEIPSGLSNCTNLNWI 495 (768)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCC-----------SCCCGGGGGCTTCCEE
T ss_pred --cccHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCccc-----------CcCCHHHhcCCCCCEE
Confidence 2233445555666655544332111 1124556788999999888743 2345567778889999
Q ss_pred EEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCc----------
Q 014826 243 EIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDR---------- 311 (418)
Q Consensus 243 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~---------- 311 (418)
++++|.+.+.+|.+++.+++|+.|++++|.+.+.+|. +..+++|+.|++++|.....+|...+......
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 9999888888888888889999999999988877775 77888888888888874445554332210000
Q ss_pred -------------------------------------------------------------------cCCCCCccccccC
Q 014826 312 -------------------------------------------------------------------HDSSSSSLVIIAF 324 (418)
Q Consensus 312 -------------------------------------------------------------------~~~~~~~~~~~~~ 324 (418)
......+..+..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 0000111123344
Q ss_pred CcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh---------
Q 014826 325 PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG--------- 395 (418)
Q Consensus 325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~--------- 395 (418)
++|+.|+++++.--..++.. +..+++|+.|++++|.....+|..+..+++|++|++++|+..+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~--------l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDE--------VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGG--------GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred ccCCEEeCcCCccCCCCChH--------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 45555555543211233322 3478899999999984334788888889999999999884321
Q ss_pred ------------------cccCCCCCCCCCcccccCcee
Q 014826 396 ------------------ERYRTGEGEDWPNISHIPNIH 416 (418)
Q Consensus 396 ------------------~~~~~~~~~~~~~i~~~~~~~ 416 (418)
..|....+++|++|.|+|++.
T Consensus 728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 136778899999999999764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.8e-29 Score=259.06 Aligned_cols=345 Identities=19% Similarity=0.121 Sum_probs=259.5
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhcc-CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-cCchh-hh
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRE-STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPET-LC 92 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~ 92 (418)
.+++|++|++++|. +++ .+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+. .+|.. +.
T Consensus 267 ~l~~L~~L~L~~n~-----l~~-~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 267 PLKSLQYLSLAENK-----FTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCTTCCEEECCSSE-----EEE-SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred ccCCCCEEECcCCc-----cCC-ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 88999999999998 553 13443444 599999999999977788888999999999999999987 88865 89
Q ss_pred cCCCCcEEeccCccCcccCChhhhccc-cccEEeccCCcccccCCccccc--ccccceecceeecCCCCCCCcccccccc
Q 014826 93 ELYNLEKLDISYCFNLKELPEGIGKLI-NMKHLLNRGTNSLRYMPVGIGR--LTGLRTLGEFRVSAGGDVDGRKACRLES 169 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 169 (418)
.+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+.+|..+.. +++|+.|++.+|... ......
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~ 413 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-------GKIPPT 413 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-------EECCGG
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-------cccCHH
Confidence 999999999999997778999999987 9999999999888888888776 889999999888654 223344
Q ss_pred ccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecC
Q 014826 170 LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG 249 (418)
Q Consensus 170 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 249 (418)
+.++++|+.+++....... .....+..+++|+.|++++|... ...+..+..+++|++|++++|.+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~-----------~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLE-----------GEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp GGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCC-----------SCCCGGGGGCTTCCEEECCSSCC
T ss_pred HhcCCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCccc-----------CcCCHHHcCCCCceEEEecCCcc
Confidence 5566666666665432111 11224567799999999999753 33456677889999999999999
Q ss_pred CCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCC-CCCcc--------
Q 014826 250 NTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSSSL-------- 319 (418)
Q Consensus 250 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------- 319 (418)
.+..|.++..+++|+.|++++|.+.+.+|. ++.+++|+.|++++|...+.++.........+... +...+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 889999999999999999999999988876 88999999999999985556665443322221110 00000
Q ss_pred --------------------------------------------------------------------ccccCCcccccc
Q 014826 320 --------------------------------------------------------------------VIIAFPKLKSLR 331 (418)
Q Consensus 320 --------------------------------------------------------------------~~~~~~~L~~L~ 331 (418)
....+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 011234556666
Q ss_pred cccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchhc
Q 014826 332 IEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGE 396 (418)
Q Consensus 332 l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 396 (418)
++++.--..++.. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.
T Consensus 639 Ls~N~l~g~ip~~--------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 639 MSYNMLSGYIPKE--------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CCSSCCBSCCCGG--------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred CcCCcccccCCHH--------HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 6653222233333 34788999999999854447888888899999999999985543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.2e-28 Score=245.49 Aligned_cols=323 Identities=15% Similarity=0.183 Sum_probs=249.0
Q ss_pred CCcccc--ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcH-HHHHhhccc------cccceeee
Q 014826 10 LPVSTR--RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPT-EILRNIKKL------VHLRYLNL 79 (418)
Q Consensus 10 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l 79 (418)
+|..+. ++++|++|++++|. +.. .+|..+.++++|++|++++|. +.+ .+|..+.++ ++|++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~-----l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCP-----NLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCT-----TCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC
T ss_pred CchhhhhcccCCCCEEEecCCc-----CCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC
Confidence 899988 99999999999998 332 256679999999999999998 888 899888776 99999999
Q ss_pred CCCCCccCch--hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccc-cceecceeecCC
Q 014826 80 RFPKIVKLPE--TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTG-LRTLGEFRVSAG 156 (418)
Q Consensus 80 ~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~ 156 (418)
++|.++.+|. .+..+++|++|++++|.+.+.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++.++...
T Consensus 313 ~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred CCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 9999999998 89999999999999999766999 8999999999999999655 88999999999 999999888765
Q ss_pred CCCCCccccccccccC--CcccccccccccCCCcchhhhhhhhcC-------CcccccceEeecccccCCCCCccccchh
Q 014826 157 GDVDGRKACRLESLKN--LEHLQVCGIRRLGDVSDVGEAKRLELD-------KKKYLSCLRLRFDKKKEGGERRKNEDDQ 227 (418)
Q Consensus 157 ~~~~~~~~~~~~~l~~--L~~L~~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (418)
. ....+.. +++|+.+++......... ...+. .+++|+.|++++|...
T Consensus 391 -~-------lp~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~~~~~~~~~~~L~~L~Ls~N~l~------------ 446 (636)
T 4eco_A 391 -Y-------IPNIFDAKSVSVMSAIDFSYNEIGSVD----GKNFDPLDPTPFKGINVSSINLSNNQIS------------ 446 (636)
T ss_dssp -S-------CCSCCCTTCSSCEEEEECCSSCTTTTT----TCSSCTTCSSCCCCCCEEEEECCSSCCC------------
T ss_pred -c-------cchhhhhcccCccCEEECcCCcCCCcc----hhhhcccccccccCCCCCEEECcCCccC------------
Confidence 1 1122222 336666666544321111 11222 5678999999998753
Q ss_pred hhhh-hCCCCCCCcEEEEeeecCCCCCchhhh-cC-------CCccEEEeeCCCCCCCCCC-CC--CCCccchhcccccc
Q 014826 228 LLLE-ALRPPLDLKELEIQFNRGNTVFPSWMT-SL-------TNLKSLGLSLCENCEQLPP-LG--KLPSLEQLFISYMS 295 (418)
Q Consensus 228 ~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~-------~~L~~L~l~~~~~~~~~~~-l~--~l~~L~~L~L~~~~ 295 (418)
.++. .+..+++|++|++++|.+. .+|.... .. ++|+.|++++|.+. .+|. +. .+++|+.|++++|.
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 1222 2345789999999999776 5555433 22 29999999999888 5554 54 89999999999998
Q ss_pred cceeccccccCCCCCccCCCCCccccccCCccccccccccc------ccccccccccccCCcccccCCCccEEEEecCCC
Q 014826 296 SVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM------ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYE 369 (418)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 369 (418)
+..+|.. +..+++|+.|+++++. -...++... ..+++|++|++++| .
T Consensus 525 -l~~ip~~-----------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--------~~l~~L~~L~Ls~N-~ 577 (636)
T 4eco_A 525 -FSKFPTQ-----------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--------TLCPSLTQLQIGSN-D 577 (636)
T ss_dssp -CSSCCCG-----------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--------GGCSSCCEEECCSS-C
T ss_pred -CCCcChh-----------------hhcCCCCCEEECCCCcccccCcccccChHHH--------hcCCCCCEEECCCC-c
Confidence 5445543 4578999999996543 233333333 47999999999999 5
Q ss_pred CCcCCccccCCCCccEEEeccCCchh
Q 014826 370 LKALPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 370 l~~~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
+..+|..+. ++|+.|++++|+...
T Consensus 578 l~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 578 IRKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCccCHhHh--CcCCEEECcCCCCcc
Confidence 688987644 899999999998544
No 4
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.7e-28 Score=237.00 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
..+|..+. ++|++|++++|. +++ ..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus 13 ~~ip~~~~--~~L~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 13 IHVPKDLS--QKTTILNISQNY-----ISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp SSCCCSCC--TTCSEEECCSSC-----CCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred cccccccc--ccccEEECCCCc-----ccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence 45787666 799999999998 444 2345689999999999999987766678899999999999999999988
Q ss_pred chhhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccccccccc--ceecceeecC
Q 014826 88 PETLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL--RTLGEFRVSA 155 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 155 (418)
|.. .+++|++|++++|.+.. .+|..++++++|++|++++|.+.+ ..+..+++| +.|++.++..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 866 89999999999998655 567889999999999999886543 334555566 7777666554
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.8e-28 Score=237.01 Aligned_cols=347 Identities=18% Similarity=0.181 Sum_probs=231.3
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH-HHhhccccccceeeeCCCCCcc
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI-LRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
.++|. +. ++|++|+|++|. +++ ..+..+.++++|++|+++++.+.+.+ +..+.++++|++|++++|.+..
T Consensus 23 ~~lp~-l~--~~l~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 23 HQVPE-LP--AHVNYVDLSLNS-----IAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp SSCCC-CC--TTCCEEECCSSC-----CCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred ccCCC-CC--CccCEEEecCCc-----cCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 34665 33 689999999987 444 23555888999999999998765444 4567889999999999998875
Q ss_pred C-chhhhcCCCCcEEeccCccCcccCChh--hhccccccEEeccCCcccccCCcc-cccccccceecceeecCCCCCCCc
Q 014826 87 L-PETLCELYNLEKLDISYCFNLKELPEG--IGKLINMKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFRVSAGGDVDGR 162 (418)
Q Consensus 87 l-~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~ 162 (418)
+ |..+.++++|++|++++|.+.+..+.. ++++++|++|++++|.+.+..|.. +.++++|++|++.++......
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--- 170 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC--- 170 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC---
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC---
Confidence 5 677888999999999999865545544 788899999999998766665665 788899999988877654211
Q ss_pred cccccccccCCcccccccccccCC--Ccc--hhhhhhhhcCCcccccceEeeccccc-----------------------
Q 014826 163 KACRLESLKNLEHLQVCGIRRLGD--VSD--VGEAKRLELDKKKYLSCLRLRFDKKK----------------------- 215 (418)
Q Consensus 163 ~~~~~~~l~~L~~L~~l~~~~~~~--~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~----------------------- 215 (418)
...+..+.. ..++.+++..... ++. .+......+..+++|++|++++|...
T Consensus 171 -~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 171 -EEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp -TTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred -hhhhhcccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 111111110 2233332222111 110 00011111223345555555555421
Q ss_pred ----CCCCCccccchhhhhhhC--CCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccch
Q 014826 216 ----EGGERRKNEDDQLLLEAL--RPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQ 288 (418)
Q Consensus 216 ----~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 288 (418)
........ ........+ ...++|++|++++|.+....+.++..+++|+.|++++|.+.+..+. +..+++|+.
T Consensus 249 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTN-FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCS-SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccchhh-hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 00000000 000000000 1236899999999988877888899999999999999988876664 888999999
Q ss_pred hcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826 289 LFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY 368 (418)
Q Consensus 289 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 368 (418)
|++++|. ++.++... +..+++|++|+++++ +++.+... .+..+++|++|++++|
T Consensus 328 L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~L~~N- 381 (455)
T 3v47_A 328 LNLSQNF-LGSIDSRM----------------FENLDKLEVLDLSYN-HIRALGDQ-------SFLGLPNLKELALDTN- 381 (455)
T ss_dssp EECCSSC-CCEECGGG----------------GTTCTTCCEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-
T ss_pred EECCCCc-cCCcChhH----------------hcCcccCCEEECCCC-cccccChh-------hccccccccEEECCCC-
Confidence 9999997 55554332 457899999999995 55555322 2247899999999998
Q ss_pred CCCcCCc-cccCCCCccEEEeccCCchh
Q 014826 369 ELKALPD-HIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 369 ~l~~~~~-~~~~~~~L~~L~l~~c~~l~ 395 (418)
.+++++. .+..+++|+.|++++|+.-+
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCCHhHhccCCcccEEEccCCCccc
Confidence 6877775 45789999999999998543
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.3e-28 Score=247.25 Aligned_cols=324 Identities=15% Similarity=0.184 Sum_probs=254.0
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHH----------------HHHHHhc--cCCCccEEecCCCCCcHHHHHhhccc
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAE----------------IVEELFR--ESTSLRALDVSQVSLPTEILRNIKKL 71 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l 71 (418)
+|..++++++|++|+|++|. +++. .+|..+. ++++|++|++++|.+.+.+|..+.++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 89999999999999999998 4431 1566677 99999999999999888899999999
Q ss_pred cccceeeeCCCC-Cc--cCchhhhcC------CCCcEEeccCccCcccCCh--hhhccccccEEeccCCcccccCCcccc
Q 014826 72 VHLRYLNLRFPK-IV--KLPETLCEL------YNLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRYMPVGIG 140 (418)
Q Consensus 72 ~~L~~L~l~~~~-l~--~l~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~ 140 (418)
++|++|++++|. ++ .+|..+..+ ++|++|++++|.+. .+|. .++++++|++|++++|.+.+.+| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 87 488888776 99999999999955 8998 89999999999999997777899 899
Q ss_pred cccccceecceeecCCCCCCCccccccccccCCcc-cccccccccC--CCcchhhhhhhhcCC--cccccceEeeccccc
Q 014826 141 RLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH-LQVCGIRRLG--DVSDVGEAKRLELDK--KKYLSCLRLRFDKKK 215 (418)
Q Consensus 141 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~--~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~ 215 (418)
.+++|+.|++.++... .....+..++. |+.+++.... .++. .+.. +++|+.|++++|...
T Consensus 351 ~l~~L~~L~L~~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT--------EIPANFCGFTEQVENLSFAHNKLKYIPN-------IFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEEEESEEECCSSEEE--------ECCTTSEEECTTCCEEECCSSCCSSCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCCCEEECCCCccc--------cccHhhhhhcccCcEEEccCCcCcccch-------hhhhcccCccCEEECcCCcCC
Confidence 9999999999887653 22334555555 6666555433 2222 2233 348999999999753
Q ss_pred CCCCCccccchhhhhhhCC-------CCCCCcEEEEeeecCCCCCchhh-hcCCCccEEEeeCCCCCCCCCC--CC----
Q 014826 216 EGGERRKNEDDQLLLEALR-------PPLDLKELEIQFNRGNTVFPSWM-TSLTNLKSLGLSLCENCEQLPP--LG---- 281 (418)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~--l~---- 281 (418)
...+..+. .+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|. +.
T Consensus 416 -----------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 416 -----------SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp -----------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred -----------CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 22334444 6789999999999776 556554 57999999999999887 5553 22
Q ss_pred ---CCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCC
Q 014826 282 ---KLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPH 358 (418)
Q Consensus 282 ---~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 358 (418)
.+++|+.|++++|. ++.++...+ ...+++|+.|+++++ +++.++.... .+++
T Consensus 483 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~---------------~~~l~~L~~L~Ls~N-~l~~ip~~~~--------~l~~ 537 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNK-LTKLSDDFR---------------ATTLPYLVGIDLSYN-SFSKFPTQPL--------NSST 537 (636)
T ss_dssp ECTTGGGCCEEECCSSC-CCBCCGGGS---------------TTTCTTCCEEECCSS-CCSSCCCGGG--------GCSS
T ss_pred cccccCCccEEECcCCc-CCccChhhh---------------hccCCCcCEEECCCC-CCCCcChhhh--------cCCC
Confidence 23499999999998 666665422 127899999999994 5666665544 8999
Q ss_pred ccEEEEec------CCCCCcCCccccCCCCccEEEeccCCc
Q 014826 359 LSSLVIDS------CYELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 359 L~~L~l~~------c~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
|++|++++ |.....+|..+..+++|+.|++++|+.
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99999964 433557888888899999999999985
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.9e-28 Score=247.04 Aligned_cols=324 Identities=14% Similarity=0.172 Sum_probs=245.8
Q ss_pred CCcccc--ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcH-HHHHhhcccc-------ccceee
Q 014826 10 LPVSTR--RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPT-EILRNIKKLV-------HLRYLN 78 (418)
Q Consensus 10 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~ 78 (418)
+|..+. ++++|++|+|++|. .... +|..+.++++|++|++++|. +.+ .+|..+.+++ +|++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~----l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCP----NMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCT----TCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred CChhhhhccCCCCCEEECcCCC----CCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 888877 99999999999997 2232 56779999999999999998 787 8888877776 999999
Q ss_pred eCCCCCccCch--hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccc-cceecceeecC
Q 014826 79 LRFPKIVKLPE--TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTG-LRTLGEFRVSA 155 (418)
Q Consensus 79 l~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~ 155 (418)
+++|.+..+|. .+..+++|+.|++++|.+. .+| .++++++|++|++++|.+. .+|..+.++++ |+.|++.+|..
T Consensus 555 Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred eeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 99999999998 8999999999999999955 888 7999999999999999665 89999999999 99999998876
Q ss_pred CCCCCCccccccccccCC--cccccccccccCC---CcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhh
Q 014826 156 GGDVDGRKACRLESLKNL--EHLQVCGIRRLGD---VSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLL 230 (418)
Q Consensus 156 ~~~~~~~~~~~~~~l~~L--~~L~~l~~~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
. . ....+..+ ++|+.+++..... ++.+.. ......+++|+.|++++|... .++
T Consensus 632 ~-~-------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l~~~~~~~L~~L~Ls~N~L~------------~lp 689 (876)
T 4ecn_A 632 K-Y-------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SMDDYKGINASTVTLSYNEIQ------------KFP 689 (876)
T ss_dssp C-S-------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CTTTCCCCCEEEEECCSSCCC------------SCC
T ss_pred C-c-------CchhhhccccCCCCEEECcCCcCCCccccchh--hhccccCCCcCEEEccCCcCC------------ccC
Confidence 5 1 11222222 3366655554322 121110 001113458999999998753 233
Q ss_pred hh-CCCCCCCcEEEEeeecCCCCCchhhhc--------CCCccEEEeeCCCCCCCCCC-CC--CCCccchhcccccccce
Q 014826 231 EA-LRPPLDLKELEIQFNRGNTVFPSWMTS--------LTNLKSLGLSLCENCEQLPP-LG--KLPSLEQLFISYMSSVK 298 (418)
Q Consensus 231 ~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~-l~--~l~~L~~L~L~~~~~~~ 298 (418)
.. +..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.+. .+|. +. .+++|+.|++++|. +.
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~ 766 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FS 766 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CS
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CC
Confidence 33 346789999999999766 66665443 239999999999887 5554 54 89999999999998 54
Q ss_pred eccccccCCCCCccCCCCCccccccCCccccccccccc------ccccccccccccCCcccccCCCccEEEEecCCCCCc
Q 014826 299 RVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM------ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKA 372 (418)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 372 (418)
.++.. +..+++|+.|++++++ -...++.. +..+++|++|++++| .+..
T Consensus 767 ~lp~~-----------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~--------l~~L~~L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 767 SFPTQ-----------------PLNSSQLKAFGIRHQRDAEGNRILRQWPTG--------ITTCPSLIQLQIGSN-DIRK 820 (876)
T ss_dssp SCCCG-----------------GGGCTTCCEEECCCCBCTTCCBCCCCCCTT--------GGGCSSCCEEECCSS-CCCB
T ss_pred ccchh-----------------hhcCCCCCEEECCCCCCcccccccccChHH--------HhcCCCCCEEECCCC-CCCc
Confidence 45433 4578999999998743 22333323 347999999999999 5688
Q ss_pred CCccccCCCCccEEEeccCCchh
Q 014826 373 LPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 373 ~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
+|..+. ++|+.|+|++|+...
T Consensus 821 Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCSCCC--SSSCEEECCSCTTCE
T ss_pred cCHhhc--CCCCEEECCCCCCCc
Confidence 987644 799999999998543
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.9e-27 Score=219.50 Aligned_cols=307 Identities=16% Similarity=0.231 Sum_probs=233.5
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 92 (418)
.+..+++|++|+++++. +.+ ++. +..+++|++|++++|.+.+ ++. +.++++|++|++++|.++.++ .+.
T Consensus 39 ~~~~l~~L~~L~l~~~~-----i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK-----VAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSC-----CCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred cchhcccccEEEEeCCc-----ccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 45689999999999998 444 333 8889999999999998553 333 889999999999999999886 588
Q ss_pred cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826 93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN 172 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 172 (418)
.+++|++|++++|. +..++. +..+++|++|++++|.....++ .+..+++|++|++.++.... . ..+..
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~------~---~~~~~ 175 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD------V---TPIAN 175 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC------C---GGGGG
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC------c---hhhcc
Confidence 99999999999998 556665 8899999999999996555444 48899999999998876551 1 12556
Q ss_pred CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC
Q 014826 173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV 252 (418)
Q Consensus 173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (418)
+++|+.+++..... .... .+..+++|+.+++.++.... ...+..+++|++|++++|.+...
T Consensus 176 l~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 176 LTDLYSLSLNYNQI-EDIS-----PLASLTSLHYFTAYVNQITD-------------ITPVANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp CTTCSEEECTTSCC-CCCG-----GGGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCEEEccCCcc-cccc-----cccCCCccceeecccCCCCC-------------CchhhcCCcCCEEEccCCccCCC
Confidence 66666666654432 1111 15567899999999887531 11156789999999999966544
Q ss_pred CchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccc
Q 014826 253 FPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI 332 (418)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 332 (418)
+. +..+++|+.|++++|.+.. ++.+..+++|+.|++++|. +..++. ...+++|+.|++
T Consensus 237 -~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~------------------~~~l~~L~~L~L 294 (347)
T 4fmz_A 237 -SP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV------------------LNNLSQLNSLFL 294 (347)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG------------------GGGCTTCSEEEC
T ss_pred -cc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh------------------hcCCCCCCEEEC
Confidence 33 7899999999999997664 4668889999999999997 554421 457899999999
Q ss_pred ccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826 333 EGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 333 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
++| .+....... +..+++|++|++++| .+++++. +..+++|+.|++++|+.
T Consensus 295 ~~n-~l~~~~~~~-------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 295 NNN-QLGNEDMEV-------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSS-CCCGGGHHH-------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cCC-cCCCcChhH-------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhcc
Confidence 996 444433222 237899999999999 4777765 66799999999999973
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=230.81 Aligned_cols=305 Identities=20% Similarity=0.198 Sum_probs=192.2
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. +++++|+|++|. ++. ..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus 24 ~~ip~~~~--~~l~~L~L~~n~-----l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 24 VAVPEGIP--TETRLLDLGKNR-----IKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp SSCCSCCC--TTCSEEECCSSC-----CCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CcCCCCCC--CCCcEEECCCCc-----cce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 34666554 478888888887 444 2244577888888888888876655566778888888888888888877
Q ss_pred ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826 88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166 (418)
Q Consensus 88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 166 (418)
|. .+.++++|++|++++|.+....+..++++++|++|++++|.+....+..+..+++|+.|++.++.... ..
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~ 168 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-------IP 168 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-------CC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-------cC
Confidence 64 46778888888888888655556677888888888888886655566677788888888877665431 00
Q ss_pred cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826 167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF 246 (418)
Q Consensus 167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (418)
...+..+++|+.|++.+|... ......+..+++|++|++++
T Consensus 169 ----------------------------~~~l~~l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 169 ----------------------------TEALSHLHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp ----------------------------HHHHTTCTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEEC
T ss_pred ----------------------------hhHhcccCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCC
Confidence 112334456666666665432 11123455566666666666
Q ss_pred ecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC--CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccC
Q 014826 247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAF 324 (418)
Q Consensus 247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (418)
|.....++.......+|+.|++++|.+.. ++. +..+++|+.|++++|. +..++... +..+
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~----------------~~~l 271 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEGSM----------------LHEL 271 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC-CCEECTTS----------------CTTC
T ss_pred CccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc-CCccChhh----------------cccc
Confidence 65555555555555567777777665543 331 5566667777776666 44443322 2355
Q ss_pred CcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccCCc
Q 014826 325 PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~ 393 (418)
++|+.|+++++ +++.+... .+..+++|++|++++| .++.++. .+..+++|+.|++++||.
T Consensus 272 ~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 272 LRLQEIQLVGG-QLAVVEPY-------AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTCCEEECCSS-CCSEECTT-------TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccCCEEECCCC-ccceECHH-------HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 66666666663 34433211 1235667777777776 5555553 345567777777776664
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.6e-27 Score=242.33 Aligned_cols=328 Identities=13% Similarity=0.149 Sum_probs=249.5
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHH----------------HHHHHhc--cCCCccEEecCCCCCcHHHHHhhccc
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAE----------------IVEELFR--ESTSLRALDVSQVSLPTEILRNIKKL 71 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l 71 (418)
+|..|.++++|++|+|++|. ++.. .+|..+. ++++|++|++++|.+.+.+|..+.++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-----Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCc-----CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 89999999999999999998 4431 2555555 99999999999999888899999999
Q ss_pred cccceeeeCCCC-Ccc--CchhhhcCC-------CCcEEeccCccCcccCCh--hhhccccccEEeccCCcccccCCccc
Q 014826 72 VHLRYLNLRFPK-IVK--LPETLCELY-------NLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRYMPVGI 139 (418)
Q Consensus 72 ~~L~~L~l~~~~-l~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l 139 (418)
++|++|++++|. ++. +|..+..++ +|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 999999999998 774 887776665 9999999999955 8998 8999999999999999665 888 89
Q ss_pred ccccccceecceeecCCCCCCCccccccccccCCcc-cccccccccCCCcchhhhhhhhcCCc--ccccceEeecccccC
Q 014826 140 GRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH-LQVCGIRRLGDVSDVGEAKRLELDKK--KYLSCLRLRFDKKKE 216 (418)
Q Consensus 140 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~ 216 (418)
..+++|+.|++.+|... .....+..+++ |+.+++...... .++ ..+... ++|+.|++++|...+
T Consensus 592 ~~L~~L~~L~Ls~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp----~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLK-YIP----NIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CTTSEESEEECCSSCCS--------CCCTTSCEECTTCCEEECCSSCCC-SCC----SCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCCCcceEEECcCCccc--------cchHHHhhccccCCEEECcCCCCC-cCc----hhhhccccCCCCEEECcCCcCCC
Confidence 99999999999888764 12233445555 666555543321 111 122333 459999999997642
Q ss_pred CCCCccccchhhhhhhCC--CCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCC-C--------CCCC
Q 014826 217 GGERRKNEDDQLLLEALR--PPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPP-L--------GKLP 284 (418)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~-l--------~~l~ 284 (418)
. ...++..+. .+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+. .+|. + .+++
T Consensus 659 ~--------ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 659 E--------GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp T--------SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred c--------cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 1 011111222 3468999999999766 6677665 8999999999999877 4443 2 2345
Q ss_pred ccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEE
Q 014826 285 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVI 364 (418)
Q Consensus 285 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l 364 (418)
+|+.|+|++|. +..++.... ...+++|+.|+++++ +++.++.... .+++|+.|++
T Consensus 729 ~L~~L~Ls~N~-L~~lp~~l~---------------~~~l~~L~~L~Ls~N-~L~~lp~~l~--------~L~~L~~L~L 783 (876)
T 4ecn_A 729 LLTTIDLRFNK-LTSLSDDFR---------------ATTLPYLSNMDVSYN-CFSSFPTQPL--------NSSQLKAFGI 783 (876)
T ss_dssp GCCEEECCSSC-CCCCCGGGS---------------TTTCTTCCEEECCSS-CCSSCCCGGG--------GCTTCCEEEC
T ss_pred CccEEECCCCC-CccchHHhh---------------hccCCCcCEEEeCCC-CCCccchhhh--------cCCCCCEEEC
Confidence 99999999997 666664422 127899999999994 5666654444 8999999999
Q ss_pred ec------CCCCCcCCccccCCCCccEEEeccCCc
Q 014826 365 DS------CYELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 365 ~~------c~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
++ |.....+|..+..+++|+.|++++|+.
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 87 433457788888899999999999985
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=8.1e-27 Score=231.36 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=103.3
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
..+|..+. ++|++|++++|. ++. ..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus 44 ~~ip~~~~--~~L~~L~Ls~N~-----i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 115 (562)
T 3a79_B 44 THVPKDLP--PRTKALSLSQNS-----ISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115 (562)
T ss_dssp CSCCTTSC--TTCCEEECCSSC-----CCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccCCCCCC--CCcCEEECCCCC-----ccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc
Confidence 34776554 789999999998 444 2235588999999999999987666677788999999999999999988
Q ss_pred chhhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccccccccc--ceecceeecC
Q 014826 88 PETLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL--RTLGEFRVSA 155 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 155 (418)
|.. .+++|++|++++|.+.. ..|..++++++|++|++++|.+... .+..+++| +.|++.++..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 866 79999999999998444 3457889999999999998855432 34444444 7777766654
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=5.4e-27 Score=222.06 Aligned_cols=308 Identities=17% Similarity=0.141 Sum_probs=239.5
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCEL 94 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l 94 (418)
.++++++|+++++. ++. ..+..+..+++|++|+++++.+.+..+..+.++++|++|++++|.++.++ ..+..+
T Consensus 43 ~l~~l~~l~l~~~~-----l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-----MRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESCE-----ESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCceEEEecCCc-----hhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 56899999999987 554 22345788999999999999866555567899999999999999998775 568899
Q ss_pred CCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826 95 YNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL 173 (418)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 173 (418)
++|++|++++|. +..+|.. ++++++|++|++++|.+....+..+.++++|++|++.++... ... +..+
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~---~~~l 185 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------HVD---LSLI 185 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-------BCC---GGGC
T ss_pred CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-------ccc---cccc
Confidence 999999999998 5577765 588999999999999776666777999999999999888765 112 3334
Q ss_pred cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826 174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF 253 (418)
Q Consensus 174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 253 (418)
+.|+.+++.... +. .+....+|+.|++++|.... .+ ....++|+.|++++|.+.+.
T Consensus 186 ~~L~~L~l~~n~-l~--------~~~~~~~L~~L~l~~n~l~~------------~~--~~~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 186 PSLFHANVSYNL-LS--------TLAIPIAVEELDASHNSINV------------VR--GPVNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp TTCSEEECCSSC-CS--------EEECCSSCSEEECCSSCCCE------------EE--CCCCSSCCEEECCSSCCCCC-
T ss_pred cccceeeccccc-cc--------ccCCCCcceEEECCCCeeee------------cc--ccccccccEEECCCCCCccc-
Confidence 455555444322 11 12234689999999887531 11 12357999999999976643
Q ss_pred chhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccc
Q 014826 254 PSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI 332 (418)
Q Consensus 254 ~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 332 (418)
.++..+++|+.|++++|.+.+..+. +..+++|+.|++++|. ++.++.. ...+++|+.|++
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------~~~l~~L~~L~L 302 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------GQPIPTLKVLDL 302 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----------------SSCCTTCCEEEC
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----------------cCCCCCCCEEEC
Confidence 5788999999999999988776554 8889999999999998 6555433 346899999999
Q ss_pred ccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh
Q 014826 333 EGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 333 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
+++ .++.++.... .+++|++|++.+| .++.++ +..+++|+.|++++|+.-.
T Consensus 303 ~~n-~l~~~~~~~~--------~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 303 SHN-HLLHVERNQP--------QFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSS-CCCCCGGGHH--------HHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCC-cceecCcccc--------ccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCccc
Confidence 996 6776665444 7899999999999 577775 5569999999999998544
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=9.2e-27 Score=233.23 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=100.5
Q ss_pred cCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC
Q 014826 198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL 277 (418)
Q Consensus 198 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 277 (418)
+..+++|++|++++|... .++..+..+++|++|++++|.+....+..+..+++|+.|++++|.....+
T Consensus 274 ~~~l~~L~~L~l~~n~l~------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TTTCTTCSEEECTTSCCS------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred hccccCCCEEeccCCccC------------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 455667777777776542 24455667778888888877666555666777788888888887766555
Q ss_pred CC--CCCCCccchhcccccccceecc---ccccCCCCCccCC-C------CCccccccCCcccccccccccccccccccc
Q 014826 278 PP--LGKLPSLEQLFISYMSSVKRVG---DEFLGVESDRHDS-S------SSSLVIIAFPKLKSLRIEGLMELEEWDYGI 345 (418)
Q Consensus 278 ~~--l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~~~~-~------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 345 (418)
+. +..+++|+.|++++|. +..+. .........+... + .....+..+++|+.|+++++ .++....
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-- 417 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDA-- 417 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTT--
T ss_pred chhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-cCCCccc--
Confidence 43 6677888888887776 33332 1111000000000 0 00001223344444444442 1211110
Q ss_pred cccCCcccccCCCccEEEEecCCCCCc-CCccccCCCCccEEEeccCCchh
Q 014826 346 TRTGNTVINIMPHLSSLVIDSCYELKA-LPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 346 ~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
...+..+++|++|++++|. +.. .+..+..+++|+.|++++|+..+
T Consensus 418 ----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 418 ----QSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp ----CCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred ----chhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 1113467888888888884 443 45566778888888888887543
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.6e-27 Score=237.26 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=82.0
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETL 91 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~ 91 (418)
.|+++++|++|++++|. ++. +.+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+..++ ..+
T Consensus 51 ~~~~l~~L~~L~Ls~n~-----l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCE-----IET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp TTTTCTTCCEEECTTCC-----CCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred hccCCccCcEEeCCCCc-----ccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc
Confidence 56777777777777776 443 22444677777777777777755555666777777777777777776555 556
Q ss_pred hcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccc
Q 014826 92 CELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGI 139 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 139 (418)
.++++|++|++++|.+.. .+|..++++++|++|++++|.+.+..+..+
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 777777777777777443 567777777777777777775544334333
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.2e-26 Score=232.42 Aligned_cols=351 Identities=17% Similarity=0.087 Sum_probs=208.2
Q ss_pred CccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-ch
Q 014826 11 PVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PE 89 (418)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~ 89 (418)
|..|+++++|++|++++|. +.. ..+..|.++++|++|++++|.+.+..|..++++++|++|++++|.+..+ +.
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~ 123 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQ-----IYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123 (606)
T ss_dssp TTTSTTCTTCSEEECTTCC-----CCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS
T ss_pred hhHhccCccceEEECCCCc-----cce-eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc
Confidence 4567777777777777776 333 2345567777777777777775555566677777777777777777765 35
Q ss_pred hhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCcccccccccc--eecceeecCCCCCCCcc---
Q 014826 90 TLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLR--TLGEFRVSAGGDVDGRK--- 163 (418)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~--- 163 (418)
.+..+++|++|++++|.+.. ..|. +.++++|++|++++|.+....+..+..+++|+ .|++.++......+...
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred hhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 56677777777777777443 2233 44477777777777755544455566666666 55554443221100000
Q ss_pred -----------------------------------------------------------------ccccccccCCccccc
Q 014826 164 -----------------------------------------------------------------ACRLESLKNLEHLQV 178 (418)
Q Consensus 164 -----------------------------------------------------------------~~~~~~l~~L~~L~~ 178 (418)
......+..+++|+.
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 000111344555555
Q ss_pred ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch-hh
Q 014826 179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS-WM 257 (418)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l 257 (418)
+++..... .. ....+..+++|++|++++|... ...+..+..+++|++|++++|.....++. .+
T Consensus 283 L~l~~n~l-~~----lp~~l~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 283 LDLTATHL-SE----LPSGLVGLSTLKKLVLSANKFE-----------NLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp EECTTSCC-SC----CCSSCCSCTTCCEEECTTCCCS-----------BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred EeccCCcc-CC----CChhhcccccCCEEECccCCcC-----------cCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 55544321 11 1124567788999999888743 22234555667777777777765544433 35
Q ss_pred hcCCCccEEEeeCCCCCCCC--C-CCCCCCccchhcccccccceeccccccC-CCCCccCC-CCC-------ccccccCC
Q 014826 258 TSLTNLKSLGLSLCENCEQL--P-PLGKLPSLEQLFISYMSSVKRVGDEFLG-VESDRHDS-SSS-------SLVIIAFP 325 (418)
Q Consensus 258 ~~~~~L~~L~l~~~~~~~~~--~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~~~~~-~~~-------~~~~~~~~ 325 (418)
..+++|+.|++++|.+.+.. + .+..+++|+.|++++|. +..++...+. ....+... +.. ...+..++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 67777777777777665432 2 36667777777777765 3333222221 11111100 000 01145678
Q ss_pred cccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCc--CC--ccccCCCCccEEEeccCCch
Q 014826 326 KLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKA--LP--DHIHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~--~~~~~~~~L~~L~l~~c~~l 394 (418)
+|+.|+++++. +...... .+..+++|++|++++|. +.+ ++ ..+..+++|+.|++++|...
T Consensus 426 ~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 426 LLKVLNLSHSL-LDISSEQ-------LFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp TCCEEECTTCC-CBTTCTT-------TTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred cCCEEECCCCc-cCCcCHH-------HHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccC
Confidence 99999999863 4333221 22478999999999994 543 22 35777999999999999743
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=236.37 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=65.8
Q ss_pred ccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-C
Q 014826 202 KYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-L 280 (418)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l 280 (418)
++|+.|++++|... ...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. +
T Consensus 266 ~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-----------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp SCCCEEECTTCCCC-----------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CCccEEECCCCccc-----------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 56777777776532 22245566788888888888877766777788888888888888887766554 7
Q ss_pred CCCCccchhcccccccceecccc
Q 014826 281 GKLPSLEQLFISYMSSVKRVGDE 303 (418)
Q Consensus 281 ~~l~~L~~L~L~~~~~~~~~~~~ 303 (418)
..+++|+.|++++|. +..++..
T Consensus 335 ~~l~~L~~L~L~~N~-i~~~~~~ 356 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNH-IAIIQDQ 356 (844)
T ss_dssp SSCTTCCEEECCSCC-CCCCCSS
T ss_pred cCCCCCCEEECCCCC-CCccChh
Confidence 788888888888886 5555543
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2e-26 Score=230.79 Aligned_cols=141 Identities=21% Similarity=0.149 Sum_probs=119.6
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. ++|++|++++|. ++. ..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+..+
T Consensus 24 ~~ip~~~~--~~l~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 24 SKVPDDIP--SSTKNIDLSFNP-----LKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred ccCCCCCC--CCcCEEECCCCC-----cCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence 45777665 699999999998 544 2344589999999999999997766677899999999999999999877
Q ss_pred -chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826 88 -PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 -~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|..+.++++|++|++++|.+....+..++++++|++|++++|.+.+ .+|..++++++|++|++.++...
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 7889999999999999999554444679999999999999997655 57999999999999999887654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=8.7e-27 Score=230.63 Aligned_cols=171 Identities=19% Similarity=0.157 Sum_probs=111.0
Q ss_pred CcccccceEeecccccCCCCCccccchhhh---hhhCCCCCCCcEEEEeeecCCCCC--chhhhcCCCccEEEeeCCCCC
Q 014826 200 KKKYLSCLRLRFDKKKEGGERRKNEDDQLL---LEALRPPLDLKELEIQFNRGNTVF--PSWMTSLTNLKSLGLSLCENC 274 (418)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~ 274 (418)
.+++|+.|++++|... ... ...+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.
T Consensus 332 ~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 332 HLKSLEFLDLSENLMV-----------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HCTTCCEEECCSSCCC-----------HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCccccEEEccCCccc-----------cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 3566666666666532 222 233567788888888888554332 134678889999999999777
Q ss_pred CCCCCCCCCCccchhcccccccceeccccccCCCCCccCC-CCCcc--ccccCCcccccccccccccccccccccccCCc
Q 014826 275 EQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSSSL--VIIAFPKLKSLRIEGLMELEEWDYGITRTGNT 351 (418)
Q Consensus 275 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 351 (418)
.....+..+++|+.|++++|. ++.++...... .+... +...+ ....+++|++|+++++ +++.++..
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~--L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~------- 469 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQT--LEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA------- 469 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTT--CSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG-------
T ss_pred cCChhhcccccccEEECCCCC-cccccchhcCC--ceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc-------
Confidence 433337778889999998887 55444332110 00000 00000 1236788888888884 56665532
Q ss_pred ccccCCCccEEEEecCCCCCcCC-ccccCCCCccEEEeccCCchh
Q 014826 352 VINIMPHLSSLVIDSCYELKALP-DHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 352 ~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~ 395 (418)
..+++|++|++++| .++.++ ..+..+++|+.|++++|+..+
T Consensus 470 --~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 470 --SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp --GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred --ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 25899999999998 676665 457789999999999998544
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.2e-25 Score=216.50 Aligned_cols=310 Identities=18% Similarity=0.160 Sum_probs=233.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
..-+..++++++|++|++++|. +++ ++ .+..+++|++|++++|.+.+ ++ ++.+++|++|++++|.++.+
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~-----l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSS-----ITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSC-----CCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred cccccChhHcCCCCEEEccCCC-----ccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee
Confidence 3345578899999999999998 554 34 38999999999999998655 33 88999999999999999988
Q ss_pred chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccc
Q 014826 88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (418)
+ +..+++|++|++++|. +..++ ++.+++|++|++++|.+.+ ++ ++.+++|+.|++..+..... .
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~------~-- 164 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITK------L-- 164 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCC------C--
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccc------c--
Confidence 6 7899999999999998 44465 8899999999999996554 43 78899999999988754421 1
Q ss_pred ccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeee
Q 014826 168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFN 247 (418)
Q Consensus 168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 247 (418)
.+..+++|+.+++..... ... .+..+++|+.|++++|.... . .+..+++|++|++++|
T Consensus 165 -~~~~l~~L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~~------------~--~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNITK------------L--DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp -CCTTCTTCCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCSC------------C--CCTTCTTCSEEECCSS
T ss_pred -ccccCCcCCEEECCCCcc-cee------ccccCCCCCEEECcCCcCCe------------e--ccccCCCCCEEECcCC
Confidence 345566666666654321 111 15677899999999987642 1 3677899999999999
Q ss_pred cCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccc----------hhcccccccceeccccccCCCCCccCCCCC
Q 014826 248 RGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLE----------QLFISYMSSVKRVGDEFLGVESDRHDSSSS 317 (418)
Q Consensus 248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~----------~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (418)
.+.. +| +..+++|+.|++++|.+.+.. +..+++|+ .|++++|.....++
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---------------- 281 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---------------- 281 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----------------
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----------------
Confidence 7665 55 778999999999999877643 34455554 44555554333332
Q ss_pred ccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826 318 SLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
...+++|+.|++++|..+..++.........++..+++|++|++++| .++.++ +..+++|+.|++++|+.
T Consensus 282 ---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 282 ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp ---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 34679999999999888877775444344445667889999999988 677764 66799999999988873
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.3e-26 Score=218.85 Aligned_cols=320 Identities=16% Similarity=0.187 Sum_probs=149.7
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
+..+++|++|++++|. +++ ++. +..+++|++|++++|.+.+..+ +.++++|++|++++|.++.++. +..
T Consensus 64 ~~~l~~L~~L~Ls~n~-----l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-----LTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp GGGCTTCCEEECCSSC-----CCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred hhhhcCCCEEECCCCc-----cCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 5666666666666665 333 222 6666666666666666433222 5666666666666666666554 566
Q ss_pred CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826 94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL 173 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 173 (418)
+++|++|++++|. +..++. ++++++|++|+++++ .. .++ .+.++++|+.|++.++.... +..+..+
T Consensus 133 l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~-~~-~~~-~~~~l~~L~~L~l~~n~l~~---------~~~l~~l 198 (466)
T 1o6v_A 133 LTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ-VT-DLK-PLANLTTLERLDISSNKVSD---------ISVLAKL 198 (466)
T ss_dssp CTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES-CC-CCG-GGTTCTTCCEEECCSSCCCC---------CGGGGGC
T ss_pred CCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc-cc-Cch-hhccCCCCCEEECcCCcCCC---------ChhhccC
Confidence 6666666666665 333332 445555555555322 11 111 14455555555555444321 1122333
Q ss_pred cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826 174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF 253 (418)
Q Consensus 174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 253 (418)
++|+.+++........ . .+..+++|+.|++++|.... ...+..+++|++|++++|.+....
T Consensus 199 ~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 199 TNLESLIATNNQISDI-T-----PLGILTNLDELSLNGNQLKD-------------IGTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp TTCSEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCCEEEecCCccccc-c-----cccccCCCCEEECCCCCccc-------------chhhhcCCCCCEEECCCCccccch
Confidence 3333333332211100 0 02233445555555444321 012333444555555544332222
Q ss_pred chhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCcc-----CCCCCccccccCCccc
Q 014826 254 PSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRH-----DSSSSSLVIIAFPKLK 328 (418)
Q Consensus 254 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~ 328 (418)
+ +..+++|+.|++++|.+.+. +.+..+++|+.|++++|. +..++.. ......+. ..-........+++|+
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 334 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQ-LEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQ 334 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CSCCGGG-GGCTTCSEEECCSSCCSCCGGGGGCTTCC
T ss_pred h--hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCc-ccCchhh-cCCCCCCEEECcCCcCCCchhhccCccCC
Confidence 1 34444455555544443322 224444444444444443 2221110 00000000 0000000023556666
Q ss_pred ccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCch
Q 014826 329 SLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 329 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l 394 (418)
.|+++++ .++.++ .+..+++|+.|++++| .+.+++. +..+++|+.|++++|+..
T Consensus 335 ~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 335 RLFFYNN-KVSDVS---------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp EEECCSS-CCCCCG---------GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred EeECCCC-ccCCch---------hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCccc
Confidence 6666664 344332 1236778888888777 4555544 566788888888887643
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=8.3e-27 Score=231.85 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TL 91 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~ 91 (418)
.|.++++|++|++++|. ++. +.+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+..++. .+
T Consensus 47 ~~~~l~~L~~L~Ls~n~-----i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCE-----IQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120 (570)
T ss_dssp TTTTCSSCCEEECTTCC-----CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSC
T ss_pred HhhCCCCceEEECCCCc-----CCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccc
Confidence 56666777777777665 333 123446667777777777776444444556667777777777776666553 46
Q ss_pred hcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccccccccc
Q 014826 92 CELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL 145 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 145 (418)
..+++|++|++++|.+.. .+|..++++++|++|++++|.+....+..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 667777777777776443 356667777777777777665444334444444444
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-26 Score=228.50 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=239.1
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCEL 94 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l 94 (418)
.+++++.++++++. ++. +.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++ ..+..+
T Consensus 49 ~l~~l~~l~l~~~~-----l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNST-----MRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCE-----ESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCC-----CCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 46789999999987 554 23455788999999999999976666668899999999999999998776 457899
Q ss_pred CCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826 95 YNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL 173 (418)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 173 (418)
++|++|++++|. +..+|.. ++++++|++|++++|.+.+..|..+..+++|++|++.+|... ...... +
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~---l 191 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------HVDLSL---I 191 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-------BCCGGG---C
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-------CcChhh---h
Confidence 999999999998 5566655 689999999999999777777778999999999999888765 112333 4
Q ss_pred cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826 174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF 253 (418)
Q Consensus 174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 253 (418)
+.|+.+++.... +. .+....+|+.|++++|.... ++. ...++|+.|++++|.+.+
T Consensus 192 ~~L~~L~l~~n~-l~--------~l~~~~~L~~L~ls~n~l~~------------~~~--~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 192 PSLFHANVSYNL-LS--------TLAIPIAVEELDASHNSINV------------VRG--PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp TTCSEEECCSSC-CS--------EEECCTTCSEEECCSSCCCE------------EEC--SCCSCCCEEECCSSCCCC--
T ss_pred hhhhhhhcccCc-cc--------cccCCchhheeeccCCcccc------------ccc--ccCCCCCEEECCCCCCCC--
Confidence 445554444321 11 12334689999999887531 111 124789999999997664
Q ss_pred chhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccc
Q 014826 254 PSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI 332 (418)
Q Consensus 254 ~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 332 (418)
+.++..+++|+.|++++|.+.+..|. +..+++|+.|++++|. +..++.. ...+++|+.|++
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-----------------~~~l~~L~~L~L 308 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------GQPIPTLKVLDL 308 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS-----------------SSCCTTCCEEEC
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc-----------------cccCCCCcEEEC
Confidence 46788999999999999988877664 8899999999999998 6555433 346899999999
Q ss_pred ccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh
Q 014826 333 EGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 333 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
+++ .+..++.... .+++|+.|++++| .+..++ +..+++|+.|++++|+.-+
T Consensus 309 s~N-~l~~i~~~~~--------~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 309 SHN-HLLHVERNQP--------QFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSS-CCCCCGGGHH--------HHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCC-CCCccCcccc--------cCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 995 5666665444 7899999999999 576665 5568999999999998544
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.7e-26 Score=228.51 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. ++|++|++++|. ++. ..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+..+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNK-----ITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSC-----CCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred ccccccCC--CCccEEECcCCc-----cCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 45666554 688888888887 443 1234477888888888888876655556778888888888888887766
Q ss_pred ch-hhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCC-cccccccccceecceeecCC
Q 014826 88 PE-TLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~~-~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 156 (418)
+. .+..+++|++|++++|.+.. ..|..++++++|++|++++|...+.+| ..+.++++|++|++.++...
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 64 47788888888888887443 345667888888888888886455554 46778888888888777654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.5e-26 Score=222.07 Aligned_cols=324 Identities=17% Similarity=0.085 Sum_probs=231.6
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-Cc
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LP 88 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~ 88 (418)
.|..|+++++|++|++++|. +...+.+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++. ++
T Consensus 46 ~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 120 (455)
T 3v47_A 46 NETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120 (455)
T ss_dssp CTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred ChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence 36789999999999999997 3321234558899999999999999776667889999999999999999874 34
Q ss_pred hh--hhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccc--cccceecceeecCCCCCCCcc
Q 014826 89 ET--LCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRL--TGLRTLGEFRVSAGGDVDGRK 163 (418)
Q Consensus 89 ~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~ 163 (418)
.. +..+++|++|++++|.+....|.. ++++++|++|++++|.+.+..+..+..+ .+|+.+++..+..........
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence 33 888999999999999966555655 8899999999999997777777777665 566777766655432110000
Q ss_pred c-cccccccCCcccccccccccCCCcchhhhhhh---------------------------------hc--CCcccccce
Q 014826 164 A-CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL---------------------------------EL--DKKKYLSCL 207 (418)
Q Consensus 164 ~-~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~---------------------------------~l--~~~~~L~~L 207 (418)
. .....+..+++|+.+++............+.. .+ ...++|+.+
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE
Confidence 0 00111223344555544433211111110000 00 023578899
Q ss_pred EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL 286 (418)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L 286 (418)
++++|... ...+..+..+++|++|++++|.+....+.++..+++|+.|++++|.+.+..+. +..+++|
T Consensus 281 ~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 281 DLSKSKIF-----------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp ECCSSCCC-----------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred EecCcccc-----------ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 99888743 33456678899999999999988877788899999999999999988665554 7889999
Q ss_pred chhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEec
Q 014826 287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDS 366 (418)
Q Consensus 287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 366 (418)
+.|++++|. +..++... +..+++|++|++++ .+++.++... +..+++|++|++++
T Consensus 350 ~~L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~-N~l~~~~~~~-------~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 350 EVLDLSYNH-IRALGDQS----------------FLGLPNLKELALDT-NQLKSVPDGI-------FDRLTSLQKIWLHT 404 (455)
T ss_dssp CEEECCSSC-CCEECTTT----------------TTTCTTCCEEECCS-SCCSCCCTTT-------TTTCTTCCEEECCS
T ss_pred CEEECCCCc-ccccChhh----------------ccccccccEEECCC-CccccCCHhH-------hccCCcccEEEccC
Confidence 999999998 55554332 45789999999999 4677665433 24789999999999
Q ss_pred CCCCCcCC
Q 014826 367 CYELKALP 374 (418)
Q Consensus 367 c~~l~~~~ 374 (418)
|+.-.+.|
T Consensus 405 N~l~~~~~ 412 (455)
T 3v47_A 405 NPWDCSCP 412 (455)
T ss_dssp SCBCCCTT
T ss_pred CCcccCCC
Confidence 96544544
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.5e-26 Score=231.27 Aligned_cols=348 Identities=17% Similarity=0.100 Sum_probs=188.8
Q ss_pred Cccccccce--eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc---
Q 014826 11 PVSTRRVKR--MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV--- 85 (418)
Q Consensus 11 ~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--- 85 (418)
|..|.+++. |++|++++|. ++. ..+..+..+++|++|++++|.+.+..+..+.++++|++|+++++...
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNN-----LNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred hhHhhccCcCCCCEEECCCCC-----cCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc
Confidence 445555554 7777777776 332 12344667777777777777655555556666677777777654322
Q ss_pred ---cCch----hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccc-ccCCc-cccc--ccccceecceeec
Q 014826 86 ---KLPE----TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSL-RYMPV-GIGR--LTGLRTLGEFRVS 154 (418)
Q Consensus 86 ---~l~~----~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~l~~--l~~L~~L~l~~~~ 154 (418)
.+|. .+..+++|++|++++|.+.+..+..++++++|++|++++|... ..++. .+.. .++|+.|++..+.
T Consensus 313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp ----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred ccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 2332 4556666777777666644444445666666666666555311 11111 1111 1234444433333
Q ss_pred CCCCCCCccccccccccCCcccccccccccCC---Ccc------------------hhhhhhhhcCCcccccceEeeccc
Q 014826 155 AGGDVDGRKACRLESLKNLEHLQVCGIRRLGD---VSD------------------VGEAKRLELDKKKYLSCLRLRFDK 213 (418)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~---~~~------------------~~~~~~~~l~~~~~L~~L~l~~~~ 213 (418)
.. ......+..+++|+.+++..... ++. ........+..+++|+.|++.++.
T Consensus 393 l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 393 IS-------KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp CC-------EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred CC-------eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 22 11112233334444433332221 110 000001122334445555554443
Q ss_pred ccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC---------CCCCCCC
Q 014826 214 KKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL---------PPLGKLP 284 (418)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~l~~l~ 284 (418)
.. .....+..+..+++|++|++++|.+....+.++..+++|+.|++++|.+.... ..+..++
T Consensus 466 l~---------~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 466 LK---------NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp CB---------CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cc---------ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 21 11223445566677777777777655555555666777777777777654321 1156667
Q ss_pred ccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEE
Q 014826 285 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVI 364 (418)
Q Consensus 285 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l 364 (418)
+|+.|++++|. ++.++... +..+++|+.|++++ .+++.++... +..+++|++|++
T Consensus 537 ~L~~L~L~~N~-l~~i~~~~----------------~~~l~~L~~L~Ls~-N~l~~l~~~~-------~~~l~~L~~L~L 591 (680)
T 1ziw_A 537 HLHILNLESNG-FDEIPVEV----------------FKDLFELKIIDLGL-NNLNTLPASV-------FNNQVSLKSLNL 591 (680)
T ss_dssp TCCEEECCSSC-CCCCCTTT----------------TTTCTTCCEEECCS-SCCCCCCTTT-------TTTCTTCCEEEC
T ss_pred CCCEEECCCCC-CCCCCHHH----------------cccccCcceeECCC-CCCCcCCHhH-------hCCCCCCCEEEC
Confidence 77777777765 44444332 34678888888877 4666665433 136789999999
Q ss_pred ecCCCCCcCCc-ccc-CCCCccEEEeccCCchhcccCC-CCCCCCC
Q 014826 365 DSCYELKALPD-HIH-QTTTLKRLWILNCGPLGERYRT-GEGEDWP 407 (418)
Q Consensus 365 ~~c~~l~~~~~-~~~-~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~ 407 (418)
++| .++.++. .+. .+++|+.|++++||..+ .|.. .+...|-
T Consensus 592 ~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c-~c~~~~~~~~~~ 635 (680)
T 1ziw_A 592 QKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC-TCESIAWFVNWI 635 (680)
T ss_dssp TTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB-CCCCCSSEECCS
T ss_pred CCC-cCCccChhHhcccccccCEEEccCCCccc-CCccHHHHHHHH
Confidence 998 6777764 333 58999999999999544 4553 4555563
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=2.3e-25 Score=226.10 Aligned_cols=141 Identities=18% Similarity=0.098 Sum_probs=103.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. +++++|++++|. ++. ..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQ-----LRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSC-----CCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred cccccccC--CCCcEEECCCCC-----CCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 34666555 588888888887 443 2234477888888888888876665666778888888888888888877
Q ss_pred ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|. .+.++++|++|++++|.+....+..++++++|++|++++|...+..+..+.++++|++|++.++...
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 75 5778888888888888744333456788888888888888666666677778888888887766543
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=219.70 Aligned_cols=124 Identities=23% Similarity=0.136 Sum_probs=105.8
Q ss_pred eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcE
Q 014826 21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEK 99 (418)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~ 99 (418)
++|+++++. ++. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+..+++|++
T Consensus 3 ~~l~ls~n~-----l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNG-----LIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTSC-----CSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCCC-----ccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 579999998 444 443233 8999999999997766677899999999999999999877 678999999999
Q ss_pred EeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826 100 LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|++++|. +..+|.. .+++|++|++++|.+.+ .+|..++++++|++|++.++...
T Consensus 74 L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 74 LDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred EecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 9999998 5578876 89999999999997765 47889999999999999988764
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.9e-25 Score=204.71 Aligned_cols=288 Identities=18% Similarity=0.212 Sum_probs=222.9
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++| .+..+++|++|++++|. +++ ++. +..+++|++|++++|.+.+ + +.+.++++|++|++++|.+..+
T Consensus 57 ~~~~-~~~~~~~L~~L~l~~n~-----i~~--~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 57 ASIQ-GIEYLTNLEYLNLNGNQ-----ITD--ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp CCCT-TGGGCTTCCEEECCSSC-----CCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC
T ss_pred ccch-hhhhcCCccEEEccCCc-----ccc--chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc
Confidence 3455 48899999999999998 554 344 8999999999999998554 3 3588999999999999999988
Q ss_pred chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccc
Q 014826 88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (418)
+. +..+++|++|++++|.....++. +..+++|++|++++|.... ++. +..+++|+.|++.++.... .
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~---------~ 192 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIED---------I 192 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC---------C
T ss_pred hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccc---------c
Confidence 76 88999999999999986666554 8999999999999995443 333 7889999999998876551 2
Q ss_pred ccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeee
Q 014826 168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFN 247 (418)
Q Consensus 168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 247 (418)
..+..++.|+.+++........ . .+..+++|+.|++++|.... .. .+..+++|++|++++|
T Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~~~~L~~L~l~~n~l~~------------~~-~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 193 SPLASLTSLHYFTAYVNQITDI-T-----PVANMTRLNSLKIGNNKITD------------LS-PLANLSQLTWLEIGTN 253 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC------------CG-GGTTCTTCCEEECCSS
T ss_pred ccccCCCccceeecccCCCCCC-c-----hhhcCCcCCEEEccCCccCC------------Cc-chhcCCCCCEEECCCC
Confidence 2255666677766655432211 1 15667899999999997641 11 2778899999999999
Q ss_pred cCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcc
Q 014826 248 RGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKL 327 (418)
Q Consensus 248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 327 (418)
.+.. + ..+..+++|+.|++++|.+.+ ++.+..+++|+.|++++|. +...+... +..+++|
T Consensus 254 ~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~----------------l~~l~~L 313 (347)
T 4fmz_A 254 QISD-I-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDMEV----------------IGGLTNL 313 (347)
T ss_dssp CCCC-C-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGHHH----------------HHTCTTC
T ss_pred ccCC-C-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcChhH----------------hhccccC
Confidence 6654 3 467899999999999997765 4668889999999999998 44443322 4578999
Q ss_pred cccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826 328 KSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY 368 (418)
Q Consensus 328 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 368 (418)
+.|++++++ ++.++. . ..+++|++|++++|+
T Consensus 314 ~~L~L~~n~-l~~~~~-~--------~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIRP-L--------ASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSS-CCCCGG-G--------GGCTTCSEESSSCC-
T ss_pred CEEEccCCc-cccccC-h--------hhhhccceeehhhhc
Confidence 999999964 655543 2 378999999999984
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=229.95 Aligned_cols=337 Identities=15% Similarity=0.163 Sum_probs=209.2
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH-HHhhccccccceeeeCCCCCcc
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI-LRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
..+|. -.++|++|+|++|. ++. ..+..|.++++|++|++++|...+.+ |..+.++++|++|++++|.+..
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~-----i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNY-----IRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCC-----CCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCC---CCCCcCEEECCCCc-----CCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 44665 34678888888887 443 23445788888888888888545444 5667888888888888888775
Q ss_pred C-chhhhcCCCCcEEeccCccCcccCChh--hhccccccEEeccCCcccccCC-cccccccccceecceeecCCCCCCCc
Q 014826 87 L-PETLCELYNLEKLDISYCFNLKELPEG--IGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFRVSAGGDVDGR 162 (418)
Q Consensus 87 l-~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 162 (418)
+ |..+..+++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+..+ ..++++++|++|++.++.....
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~---- 163 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV---- 163 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC----
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee----
Confidence 5 677888888888888888765555554 7788888888888886554433 4677888888888877665421
Q ss_pred cccccccccCCcccccccccccCCCcchhhhhhhhcCCcc------cccceEeecccccCCCCCc---------------
Q 014826 163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK------YLSCLRLRFDKKKEGGERR--------------- 221 (418)
Q Consensus 163 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~--------------- 221 (418)
....+..+.. ++|+.+++......... ...+..+. .|+.|++++|.........
T Consensus 164 ~~~~l~~l~~-~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 164 CEHELEPLQG-KTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CSGGGHHHHH-CSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CHHHcccccC-CccceEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 1112222200 33333333322111000 00111122 3666666665332110000
Q ss_pred ----------cccchhhhhhhCCC--CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccch
Q 014826 222 ----------KNEDDQLLLEALRP--PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQ 288 (418)
Q Consensus 222 ----------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 288 (418)
...........+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. +..+++|+.
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 00000111122222 37899999999987777778888999999999999988776654 888999999
Q ss_pred hcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826 289 LFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY 368 (418)
Q Consensus 289 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 368 (418)
|++++|. +..+.... +..+++|+.|+++++ .+..++.. .+..+++|++|++++|
T Consensus 319 L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N-~i~~~~~~-------~~~~l~~L~~L~Ls~N- 372 (844)
T 3j0a_A 319 LNLSYNL-LGELYSSN----------------FYGLPKVAYIDLQKN-HIAIIQDQ-------TFKFLEKLQTLDLRDN- 372 (844)
T ss_dssp EEEESCC-CSCCCSCS----------------CSSCTTCCEEECCSC-CCCCCCSS-------CSCSCCCCCEEEEETC-
T ss_pred EECCCCC-CCccCHHH----------------hcCCCCCCEEECCCC-CCCccChh-------hhcCCCCCCEEECCCC-
Confidence 9999997 44443322 346788888888874 44444322 1235677777777777
Q ss_pred CCCcCCccccCCCCccEEEeccCC
Q 014826 369 ELKALPDHIHQTTTLKRLWILNCG 392 (418)
Q Consensus 369 ~l~~~~~~~~~~~~L~~L~l~~c~ 392 (418)
.++.++. +++|+.|++++|+
T Consensus 373 ~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 373 ALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CSCCCSS----CCSCSEEEEESCC
T ss_pred CCCcccC----CCCcchhccCCCC
Confidence 4554433 5556666665554
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=223.66 Aligned_cols=140 Identities=24% Similarity=0.167 Sum_probs=115.7
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. +++++|++++|. ++. ..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus 20 ~~ip~~l~--~~l~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 20 YKIPDNLP--FSTKNLDLSFNP-----LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SSCCSSSC--SSCCEEECCSCC-----CCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cccCCCcc--ccccEEEccCCc-----cCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 45776554 489999999998 444 2234589999999999999986665566789999999999999998877
Q ss_pred c-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826 88 P-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+ ..+.++++|++|++++|. +..++. .++++++|++|++++|.+.. .+|..++++++|++|++.++...
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 6 678999999999999998 555543 68999999999999996655 47899999999999999877554
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=212.66 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=224.7
Q ss_pred CCCCcc-ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 8 ASLPVS-TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 8 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
+++|.. |.++++|++|++++|. +++ ..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 131 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQ-----IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred hhCChhHhcccccCcEEECCCCc-----ccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence 346654 6889999999999998 444 223458999999999999999766666778999999999999999999
Q ss_pred Cchh-hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccc
Q 014826 87 LPET-LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKAC 165 (418)
Q Consensus 87 l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 165 (418)
+|.. +..+++|++|++++|.+....+..++++++|++|++++|.+.. + .+..+++|+.+++.++...
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~l~--------- 199 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS--------- 199 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSCCS---------
T ss_pred CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccccc---------
Confidence 9865 5899999999999999655556678999999999999995543 2 3567889999998776543
Q ss_pred ccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEe
Q 014826 166 RLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQ 245 (418)
Q Consensus 166 ~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (418)
.++....|+.+++..... ...+ ....++|+.|++++|.... ...+..+++|++|+++
T Consensus 200 ---~~~~~~~L~~L~l~~n~l-~~~~------~~~~~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 200 ---TLAIPIAVEELDASHNSI-NVVR------GPVNVELTILKLQHNNLTD-------------TAWLLNYPGLVEVDLS 256 (390)
T ss_dssp ---EEECCSSCSEEECCSSCC-CEEE------CCCCSSCCEEECCSSCCCC-------------CGGGGGCTTCSEEECC
T ss_pred ---ccCCCCcceEEECCCCee-eecc------ccccccccEEECCCCCCcc-------------cHHHcCCCCccEEECC
Confidence 122333455555443322 1111 1224789999999997641 2456778999999999
Q ss_pred eecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCC
Q 014826 246 FNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFP 325 (418)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (418)
+|.+....|..+..+++|+.|++++|.+.........+++|+.|++++|. +..++.. ...++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------~~~l~ 318 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-----------------QPQFD 318 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-----------------HHHHT
T ss_pred CCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc-----------------ccccC
Confidence 99887777888999999999999999877644446789999999999997 6555543 45789
Q ss_pred cccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826 326 KLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY 368 (418)
Q Consensus 326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 368 (418)
+|+.|+++++ .++.++ +..+++|++|++++|+
T Consensus 319 ~L~~L~L~~N-~i~~~~----------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 319 RLENLYLDHN-SIVTLK----------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCSEEECCSS-CCCCCC----------CCTTCCCSEEECCSSC
T ss_pred cCCEEECCCC-ccceeC----------chhhccCCEEEcCCCC
Confidence 9999999995 466554 2368999999999985
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.9e-24 Score=209.31 Aligned_cols=318 Identities=19% Similarity=0.204 Sum_probs=224.1
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcC
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCEL 94 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l 94 (418)
..+++|++|+++++. +.. ++. +..+++|++|++++|.+.+. +. +.++++|++|++++|.+..++. +..+
T Consensus 43 ~~l~~l~~L~l~~~~-----i~~--l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG-----IKS--IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHHTCCEEECCSSC-----CCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hHhccccEEecCCCC-----Ccc--Ccc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCC
Confidence 357899999999987 444 444 78899999999999985543 33 8899999999999999998877 8999
Q ss_pred CCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCc
Q 014826 95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLE 174 (418)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 174 (418)
++|++|++++|. +..++. ++++++|++|++++|.+. .++ .+..+++|+.|++.+. .. ....+.+++
T Consensus 112 ~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~-~~---------~~~~~~~l~ 177 (466)
T 1o6v_A 112 TNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQ-VT---------DLKPLANLT 177 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEES-CC---------CCGGGTTCT
T ss_pred CCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCc-cc---------CchhhccCC
Confidence 999999999998 555665 899999999999999543 344 4889999999998532 22 122366677
Q ss_pred ccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCc
Q 014826 175 HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFP 254 (418)
Q Consensus 175 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 254 (418)
+|+.+++..... ... ..+..+++|+.|++.+|.... ...+..+++|++|++++|.+.. +
T Consensus 178 ~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~-~- 236 (466)
T 1o6v_A 178 TLERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISD-------------ITPLGILTNLDELSLNGNQLKD-I- 236 (466)
T ss_dssp TCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCC-C-
T ss_pred CCCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCcccc-------------cccccccCCCCEEECCCCCccc-c-
Confidence 777776665432 221 135678999999999987531 1114568999999999996654 3
Q ss_pred hhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCC-CCC----ccccccCCcccc
Q 014826 255 SWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSS----SLVIIAFPKLKS 329 (418)
Q Consensus 255 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~L~~ 329 (418)
..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|. +..++. .......+... +.. ......+++|+.
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 313 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY 313 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred hhhhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence 45789999999999999876544 48889999999999997 444432 11100000000 000 001344556666
Q ss_pred cccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826 330 LRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 330 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
|+++++ ++..+.. +..+++|++|++.+| .+++++ .+..+++|+.|++++|+.
T Consensus 314 L~L~~n-~l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 314 LTLYFN-NISDISP---------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSS-CCSCCGG---------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred EECcCC-cCCCchh---------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 666654 3333321 236788888888887 566664 456688888888888864
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.5e-25 Score=217.66 Aligned_cols=348 Identities=22% Similarity=0.151 Sum_probs=219.4
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCEL 94 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l 94 (418)
.|...++++++++. ++. +|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+.++
T Consensus 29 ~~~~~~~l~ls~~~-----L~~--ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRN-----LTH--VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSC-----CCS--CCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCC-----Ccc--CCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 55666899999998 554 44323 38999999999997666667899999999999999999877 5778999
Q ss_pred CCCcEEeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826 95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL 173 (418)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 173 (418)
++|++|++++|. +..+|.. .+++|++|++++|.+.+ .+|..++++++|++|++.++.... ..+..++.+
T Consensus 100 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~L 169 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------LDLLPVAHL 169 (562)
T ss_dssp TTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-------TTTGGGTTS
T ss_pred CCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-------Cchhhhhhc
Confidence 999999999999 5678876 89999999999996655 356889999999999999877652 223333333
Q ss_pred cccccccccccCC-----Ccc-hhh----------------------------------------------hhhhhc---
Q 014826 174 EHLQVCGIRRLGD-----VSD-VGE----------------------------------------------AKRLEL--- 198 (418)
Q Consensus 174 ~~L~~l~~~~~~~-----~~~-~~~----------------------------------------------~~~~~l--- 198 (418)
+|+.+++..... .+. +.. .....+
T Consensus 170 -~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 -HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp -CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred -eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 223333222110 000 000 000000
Q ss_pred ------------------------CCcccccceEeecccccCCCCCccc---------------------cchhhhhh--
Q 014826 199 ------------------------DKKKYLSCLRLRFDKKKEGGERRKN---------------------EDDQLLLE-- 231 (418)
Q Consensus 199 ------------------------~~~~~L~~L~l~~~~~~~~~~~~~~---------------------~~~~~~~~-- 231 (418)
....+|++|++++|...+..+.... ........
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence 0112666677766654321110000 00000000
Q ss_pred -------------------hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC--C-CCCCCCccchh
Q 014826 232 -------------------ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL--P-PLGKLPSLEQL 289 (418)
Q Consensus 232 -------------------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~l~~l~~L~~L 289 (418)
....+++|++|++++|.+.+..|.++..+++|+.|++++|.+.+.. + .+..+++|+.|
T Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred ccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 0155678888888888777777777788888888888888766422 2 26778888888
Q ss_pred ccccccccee-ccccccCC-CCCccCC-CCCcc---ccccC-CcccccccccccccccccccccccCCcccccCCCccEE
Q 014826 290 FISYMSSVKR-VGDEFLGV-ESDRHDS-SSSSL---VIIAF-PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSL 362 (418)
Q Consensus 290 ~L~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~---~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L 362 (418)
++++|. +.. ++...+.. ...+... +...+ ....+ ++|+.|+++++ +++.++.... .+++|++|
T Consensus 409 ~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~--------~l~~L~~L 478 (562)
T 3a79_B 409 DVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT--------HLQALQEL 478 (562)
T ss_dssp ECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT--------SSCCCSEE
T ss_pred ECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc--------CCCCCCEE
Confidence 888887 433 54432221 1100000 00000 11222 46777777764 5555554333 67888888
Q ss_pred EEecCCCCCcCCcc-ccCCCCccEEEeccCCch
Q 014826 363 VIDSCYELKALPDH-IHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 363 ~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l 394 (418)
++++| .++.+|.. +..+++|+.|++++||..
T Consensus 479 ~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 479 NVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 88888 67778765 677888888888888854
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.1e-25 Score=212.34 Aligned_cols=262 Identities=20% Similarity=0.148 Sum_probs=174.1
Q ss_pred CccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-ch
Q 014826 11 PVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PE 89 (418)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~ 89 (418)
+..|.++++|++|+|++|. ++. ..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+..+ +.
T Consensus 49 ~~~~~~l~~L~~L~L~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 122 (477)
T 2id5_A 49 QDEFASFPHLEELELNENI-----VSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122 (477)
T ss_dssp TTTTTTCTTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT
T ss_pred HhHccCCCCCCEEECCCCc-----cCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh
Confidence 5678999999999999998 554 2356689999999999999986544444578999999999999998855 56
Q ss_pred hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccc
Q 014826 90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLES 169 (418)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 169 (418)
.+..+++|++|++++|.+....+..++++++|++|++++|.+....+..+..+++|+.|++.++... ......
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-------~~~~~~ 195 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-------AIRDYS 195 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-------EECTTC
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-------EeChhh
Confidence 7889999999999999966666678999999999999999665544556889999999999887654 112223
Q ss_pred ccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecC
Q 014826 170 LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG 249 (418)
Q Consensus 170 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 249 (418)
+..+++|+.+++.........+. ......+|+.|++++|.... .....+..+++|++|++++|.+
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTP----NCLYGLNLTSLSITHCNLTA-----------VPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECT----TTTTTCCCSEEEEESSCCCS-----------CCHHHHTTCTTCCEEECCSSCC
T ss_pred cccCcccceeeCCCCccccccCc----ccccCccccEEECcCCcccc-----------cCHHHhcCccccCeeECCCCcC
Confidence 44445555554443322221111 11112356666666654321 1112344556666666666655
Q ss_pred CCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceecc
Q 014826 250 NTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVG 301 (418)
Q Consensus 250 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~ 301 (418)
....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|. ++.++
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 312 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLE 312 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCC
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeC
Confidence 444444455666666666666655544332 5556666666666664 44443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=5.2e-24 Score=204.99 Aligned_cols=291 Identities=14% Similarity=0.127 Sum_probs=210.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
..+| .+..+++|++|++++|. +++ ++ +..+++|++|++++|.+.+. + ++++++|++|++++|.++.+
T Consensus 55 ~~~~-~l~~l~~L~~L~Ls~n~-----l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 55 TDMT-GIEKLTGLTKLICTSNN-----ITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp CCCT-TGGGCTTCSEEECCSSC-----CSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC
T ss_pred ccCh-hhcccCCCCEEEccCCc-----CCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee
Confidence 3466 68999999999999998 554 32 78999999999999986653 3 88999999999999999988
Q ss_pred chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccc
Q 014826 88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (418)
+ +..+++|++|++++|.+. .++ ++.+++|++|++++|...+.+ .+..+++|+.|++.++.... . .
T Consensus 122 ~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~------l-~- 186 (457)
T 3bz5_A 122 D--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE------L-D- 186 (457)
T ss_dssp C--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC------C-C-
T ss_pred c--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce------e-c-
Confidence 6 889999999999999844 454 888999999999999666665 47889999999998887652 1 1
Q ss_pred ccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeee
Q 014826 168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFN 247 (418)
Q Consensus 168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 247 (418)
+..++.|+.+++..... ... .+..+++|+.|++++|.... ++ +..+++|++|++++|
T Consensus 187 --l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~~------------ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLTE------------ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp --CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECCSS
T ss_pred --cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCcccc------------cC--ccccCCCCEEEeeCC
Confidence 45566666666554332 111 25678999999999998641 22 677899999999999
Q ss_pred cCCCCCchhhhcCCCccEEE----------eeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCC
Q 014826 248 RGNTVFPSWMTSLTNLKSLG----------LSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSS 317 (418)
Q Consensus 248 ~~~~~~~~~l~~~~~L~~L~----------l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (418)
.+....+ ..+++|+.|+ +++|...+.+| .+.+++|+.|++++|..++.++.
T Consensus 244 ~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~--------------- 304 (457)
T 3bz5_A 244 PLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC--------------- 304 (457)
T ss_dssp CCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC---------------
T ss_pred cCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc---------------
Confidence 7665433 3455555554 44444444433 56789999999999987777653
Q ss_pred ccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC
Q 014826 318 SLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP 374 (418)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 374 (418)
.+++|+.++++++++++.+..........++..+++|+.|++.++ .+++++
T Consensus 305 -----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 305 -----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp -----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS-CCCBCT
T ss_pred -----CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC-CCCCcc
Confidence 223444444444444444443333222223558999999999998 565544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.3e-25 Score=218.59 Aligned_cols=290 Identities=13% Similarity=0.087 Sum_probs=225.1
Q ss_pred CCCcc-ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 9 SLPVS-TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 9 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.+|.. |+++++|++|+|++|. +++ ..+..|..+++|++|++++|.+.+..|..++++++|++|++++|.++.+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~-----l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQ-----IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcCHHHHccCCCCcEEECCCCC-----CCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 35554 6789999999999998 544 2344589999999999999997766667789999999999999999988
Q ss_pred chh-hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826 88 PET-LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166 (418)
Q Consensus 88 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 166 (418)
|.. +..+++|++|++++|.+....|..++++++|++|++++|.+.. + .+..+++|+.|++.++...
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~l~---------- 205 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS---------- 205 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSCCS----------
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCccc----------
Confidence 865 5899999999999999666666679999999999999995544 3 3567889999998776544
Q ss_pred cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826 167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF 246 (418)
Q Consensus 167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (418)
.++....|+.+++..... ..... ...++|+.|++++|.... +..+..+++|++|++++
T Consensus 206 --~l~~~~~L~~L~ls~n~l-~~~~~------~~~~~L~~L~L~~n~l~~-------------~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 206 --TLAIPIAVEELDASHNSI-NVVRG------PVNVELTILKLQHNNLTD-------------TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp --EEECCTTCSEEECCSSCC-CEEEC------SCCSCCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCS
T ss_pred --cccCCchhheeeccCCcc-ccccc------ccCCCCCEEECCCCCCCC-------------ChhhccCCCCCEEECCC
Confidence 223334455555544322 11110 113689999999998642 25567789999999999
Q ss_pred ecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCc
Q 014826 247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPK 326 (418)
Q Consensus 247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (418)
|.+....|..++.+++|+.|++++|.+......+..+++|+.|++++|. +..++.. +..+++
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~-----------------~~~l~~ 325 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-----------------QPQFDR 325 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-----------------HHHHTT
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc-----------------cccCCC
Confidence 9888888889999999999999999877643446779999999999998 5555543 457899
Q ss_pred ccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826 327 LKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY 368 (418)
Q Consensus 327 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 368 (418)
|+.|+++++ .+..++ +..+++|++|++++|+
T Consensus 326 L~~L~L~~N-~l~~~~----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 326 LENLYLDHN-SIVTLK----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSEEECCSS-CCCCCC----------CCTTCCCSEEECCSSC
T ss_pred CCEEECCCC-CCCCcC----------hhhcCCCCEEEeeCCC
Confidence 999999995 455554 2368999999999985
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.4e-24 Score=198.86 Aligned_cols=252 Identities=21% Similarity=0.223 Sum_probs=204.8
Q ss_pred ceeeEEeecCCCCCCCCccHH-HHHHHhccCCCccEEecCC-CCCcHHHHHhhccccccceeeeCCCCCc-cCchhhhcC
Q 014826 18 KRMRTLLISASGSDHSSLNAE-IVEELFRESTSLRALDVSQ-VSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCEL 94 (418)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l 94 (418)
.+++.|+++++. +++. .++..+.++++|++|++++ +.+.+.+|..+.++++|++|++++|.+. .+|..+..+
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 589999999998 3310 1455689999999999995 7777788888999999999999999987 888889999
Q ss_pred CCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccccc-ccceecceeecCCCCCCCccccccccccCC
Q 014826 95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLT-GLRTLGEFRVSAGGDVDGRKACRLESLKNL 173 (418)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 173 (418)
++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..++ +|+.|++.++... ......+..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-------~~~~~~~~~l 197 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-------GKIPPTFANL 197 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-------EECCGGGGGC
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-------ccCChHHhCC
Confidence 9999999999997778999999999999999999987778999999998 9999999887654 1222333344
Q ss_pred cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826 174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF 253 (418)
Q Consensus 174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 253 (418)
+ |+.+++...... ......+..+++|+.|++++|.... ....+..+++|++|++++|.+.+..
T Consensus 198 ~-L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 198 N-LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAF------------DLGKVGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp C-CSEEECCSSEEE----ECCGGGCCTTSCCSEEECCSSEECC------------BGGGCCCCTTCCEEECCSSCCEECC
T ss_pred c-ccEEECcCCccc----CcCCHHHhcCCCCCEEECCCCceee------------ecCcccccCCCCEEECcCCcccCcC
Confidence 3 666665543221 1122356778999999999987531 2233677899999999999888889
Q ss_pred chhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccce
Q 014826 254 PSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVK 298 (418)
Q Consensus 254 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 298 (418)
|.++..+++|+.|++++|.+.+.+|....+++|+.+++.+|+.+.
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 999999999999999999999888888899999999999998543
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.6e-24 Score=217.91 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=110.0
Q ss_pred hhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCC-CCC-CCCCCccchhcccccccceeccccccCCC
Q 014826 231 EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQ-LPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVE 308 (418)
Q Consensus 231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 308 (418)
..+..+++++.++++.|......+..+..+++++.|++++|..... .|. +..+++|+.|++++|. ++.++...
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~---- 513 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA---- 513 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT----
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH----
Confidence 3456678888888888877666777777899999999999875543 333 7889999999999997 66665443
Q ss_pred CCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcC-CccccCC-CCccEE
Q 014826 309 SDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKAL-PDHIHQT-TTLKRL 386 (418)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~-~~L~~L 386 (418)
+..+++|++|+++++ +++.++... +..+++|+.|++++| .++.+ |..+..+ ++|+.|
T Consensus 514 ------------f~~l~~L~~L~Ls~N-~l~~l~~~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 514 ------------FNSLSSLQVLNMSHN-NFFSLDTFP-------YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp ------------TTTCTTCCEEECTTS-CCCBCCCGG-------GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEE
T ss_pred ------------HcCCCCCCEEECCCC-cCCCCChhH-------HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEE
Confidence 447899999999984 677665432 247899999999999 56655 4566666 689999
Q ss_pred EeccCCchhcccCCCCCCCC
Q 014826 387 WILNCGPLGERYRTGEGEDW 406 (418)
Q Consensus 387 ~l~~c~~l~~~~~~~~~~~~ 406 (418)
++++||.. +.|.-.+...|
T Consensus 573 ~L~~Np~~-C~C~~~~~~~w 591 (635)
T 4g8a_A 573 NLTQNDFA-CTCEHQSFLQW 591 (635)
T ss_dssp ECTTCCBC-CSGGGHHHHHH
T ss_pred EeeCCCCc-ccCCcHHHHHH
Confidence 99999954 44543333333
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=5.3e-24 Score=196.93 Aligned_cols=294 Identities=19% Similarity=0.145 Sum_probs=166.6
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L 97 (418)
+++.++++++. ++. +|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+..+++|
T Consensus 34 ~l~~l~~~~~~-----l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLG-----LKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSC-----CSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCC-----ccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 78889888887 443 33222 46889999998886555556788889999999999888866 5678889999
Q ss_pred cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccc
Q 014826 98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ 177 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 177 (418)
++|++++|. +..+|..+. ++|++|++++|.+....+..+..+++|++|++.++.... .......+..+
T Consensus 105 ~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l---- 172 (332)
T 2ft3_A 105 QKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEPGAFDGL---- 172 (332)
T ss_dssp CEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-----GGSCTTSSCSC----
T ss_pred CEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-----CCCCcccccCC----
Confidence 999999888 556776554 789999998886554444557888889988887765431 00111222222
Q ss_pred cccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhh
Q 014826 178 VCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWM 257 (418)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 257 (418)
+|+.|++++|.... ++..+ .++|++|++++|.+....+..+
T Consensus 173 -------------------------~L~~L~l~~n~l~~------------l~~~~--~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 173 -------------------------KLNYLRISEAKLTG------------IPKDL--PETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp -------------------------CCSCCBCCSSBCSS------------CCSSS--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred -------------------------ccCEEECcCCCCCc------------cCccc--cCCCCEEECCCCcCCccCHHHh
Confidence 34444444433210 11111 1345555555554444444444
Q ss_pred hcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccc
Q 014826 258 TSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM 336 (418)
Q Consensus 258 ~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 336 (418)
..+++|+.|++++|.+.+..+. +..+++|+.|++++|. ++.++.. +..+++|+.|++++ .
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----------------l~~l~~L~~L~l~~-N 274 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG-----------------LPDLKLLQVVYLHT-N 274 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-----------------GGGCTTCCEEECCS-S
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-----------------hhcCccCCEEECCC-C
Confidence 5555555555555544443332 4445555555555554 3333322 23455555555555 2
Q ss_pred ccccccccccccCCcccccCCCccEEEEecCCCC--CcCCccccCCCCccEEEeccCC
Q 014826 337 ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYEL--KALPDHIHQTTTLKRLWILNCG 392 (418)
Q Consensus 337 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~L~~L~l~~c~ 392 (418)
.++.++.... .+......+++|++|++.+++.. ...+..+..+++|+.+++++|+
T Consensus 275 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDF-CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSS-SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCccChhHc-cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3444332211 00000012466777777777533 1223455667777777777764
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.9e-25 Score=216.25 Aligned_cols=349 Identities=17% Similarity=0.084 Sum_probs=229.1
Q ss_pred cccccceeeEEeecCCCCCCCCccHH---HHHHHhccCCCccEEecCCCCCcHHHHHhh-cccc----ccceeeeCCCCC
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAE---IVEELFRESTSLRALDVSQVSLPTEILRNI-KKLV----HLRYLNLRFPKI 84 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~l 84 (418)
.+..+++|++|++++|. +++. .++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+
T Consensus 23 ~~~~~~~L~~L~L~~~~-----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHHHHTTCSEEEEESSC-----CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred HHhhcCCccEEEccCCC-----CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 36788999999999998 5542 466778888999999999998665544333 3455 699999999987
Q ss_pred c-----cCchhhhcCCCCcEEeccCccCcccCChhhh-----ccccccEEeccCCccccc----CCcccccccccceecc
Q 014826 85 V-----KLPETLCELYNLEKLDISYCFNLKELPEGIG-----KLINMKHLLNRGTNSLRY----MPVGIGRLTGLRTLGE 150 (418)
Q Consensus 85 ~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l 150 (418)
+ .++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+..+++|++|++
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 7 4567788899999999999985443333332 246799999999865543 3556677889999999
Q ss_pred eeecCCCCCCCcccccccccc-CCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826 151 FRVSAGGDVDGRKACRLESLK-NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL 229 (418)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~-~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 229 (418)
.++...... .......+. ..++|+.+++..+.............+..+++|++|++++|.... .....+
T Consensus 178 ~~n~i~~~~---~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-------~~~~~l 247 (461)
T 1z7x_W 178 SNNDINEAG---VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-------VGMAEL 247 (461)
T ss_dssp CSSBCHHHH---HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHH
T ss_pred cCCCcchHH---HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-------HHHHHH
Confidence 877643100 001111111 244666666665543322222334455678899999999887420 000112
Q ss_pred hh-hCCCCCCCcEEEEeeecCCCC----CchhhhcCCCccEEEeeCCCCCCCCCC------CCCCCccchhcccccccce
Q 014826 230 LE-ALRPPLDLKELEIQFNRGNTV----FPSWMTSLTNLKSLGLSLCENCEQLPP------LGKLPSLEQLFISYMSSVK 298 (418)
Q Consensus 230 ~~-~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~------l~~l~~L~~L~L~~~~~~~ 298 (418)
.. ....+++|++|++++|.+... ++..+..+++|+.|++++|.+.+..+. ....++|+.|++++|. ++
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~ 326 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FT 326 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-Cc
Confidence 22 234578999999999976654 456666799999999999976432111 2234689999999987 43
Q ss_pred eccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCccc-ccCCCccEEEEecCCCCC-----c
Q 014826 299 RVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVI-NIMPHLSSLVIDSCYELK-----A 372 (418)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~-----~ 372 (418)
..+...++. .+..+++|++|+++++ .+.+...... . ..+ ...++|++|++++| .++ .
T Consensus 327 ~~~~~~l~~------------~l~~~~~L~~L~Ls~n-~i~~~~~~~l--~-~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 327 AACCSHFSS------------VLAQNRFLLELQISNN-RLEDAGVREL--C-QGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp GGGHHHHHH------------HHHHCSSCCEEECCSS-BCHHHHHHHH--H-HHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred hHHHHHHHH------------HHhhCCCccEEEccCC-ccccccHHHH--H-HHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 322111111 0446799999999986 5555432211 0 000 12679999999999 565 5
Q ss_pred CCccccCCCCccEEEeccCCch
Q 014826 373 LPDHIHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 373 ~~~~~~~~~~L~~L~l~~c~~l 394 (418)
++..+..+++|++|++++|+.-
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHhCCCccEEECCCCCCC
Confidence 6666677999999999999743
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.2e-23 Score=194.33 Aligned_cols=294 Identities=19% Similarity=0.169 Sum_probs=159.3
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L 97 (418)
+++.++++++. ++. +|. .-.+.|++|+++++.+.+..+..+.++++|++|++++|.++.+ |..+..+++|
T Consensus 32 ~l~~l~~~~~~-----l~~--lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLG-----LEK--VPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSC-----CCS--CCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCCC-----ccc--cCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 77888887776 333 332 1235788888888875544444677788888888888887766 5677788888
Q ss_pred cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccc
Q 014826 98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ 177 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 177 (418)
++|++++|. +..+|..+. ++|++|++++|.+....+..+.++++|++|++.++.... .......+
T Consensus 103 ~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~------- 167 (330)
T 1xku_A 103 ERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAF------- 167 (330)
T ss_dssp CEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGG-------
T ss_pred CEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhc-------
Confidence 888888877 556665443 678888888875555455557777888888776665431 00111122
Q ss_pred cccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhh
Q 014826 178 VCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWM 257 (418)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 257 (418)
..+++|+.|++++|.... ++..+ .++|++|++++|.+....+..+
T Consensus 168 ---------------------~~l~~L~~L~l~~n~l~~------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 168 ---------------------QGMKKLSYIRIADTNITT------------IPQGL--PPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp ---------------------GGCTTCCEEECCSSCCCS------------CCSSC--CTTCSEEECTTSCCCEECTGGG
T ss_pred ---------------------cCCCCcCEEECCCCcccc------------CCccc--cccCCEEECCCCcCCccCHHHh
Confidence 233445555554443320 11111 1455555555554444444455
Q ss_pred hcCCCccEEEeeCCCCCCCCC-CCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccc
Q 014826 258 TSLTNLKSLGLSLCENCEQLP-PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM 336 (418)
Q Consensus 258 ~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 336 (418)
..+++|+.|++++|.+.+..+ .+..+++|+.|++++|. +..++.. +..+++|++|+++++
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----------------l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-----------------LADHKYIQVVYLHNN- 273 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-----------------TTTCSSCCEEECCSS-
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh-----------------hccCCCcCEEECCCC-
Confidence 555555555555555444333 24455555555555554 3333322 224455555555552
Q ss_pred ccccccccccccCCcccccCCCccEEEEecCCCCC-cC-CccccCCCCccEEEeccC
Q 014826 337 ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELK-AL-PDHIHQTTTLKRLWILNC 391 (418)
Q Consensus 337 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~-~~~~~~~~~L~~L~l~~c 391 (418)
.++.++.... .+.......+.|+.+++.+++... .+ |..+..+++++.+++++|
T Consensus 274 ~i~~~~~~~f-~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDF-CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSS-SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhc-CCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3443332211 000001124566777777765321 22 234555677777777665
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.5e-24 Score=214.93 Aligned_cols=326 Identities=14% Similarity=0.151 Sum_probs=178.9
Q ss_pred eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc-----cCchh
Q 014826 20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPET 90 (418)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~ 90 (418)
|++|+|++|. .+....++..+..+++|++|++++|.+.+. ++..+..+++|++|+++++.++ .++..
T Consensus 140 L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~ 215 (592)
T 3ogk_B 140 LETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215 (592)
T ss_dssp CCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH
T ss_pred CcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH
Confidence 7777777665 455555666566677777777777654322 4444455666777777666654 23344
Q ss_pred hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCc--------------------------ccccCCcccccccc
Q 014826 91 LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN--------------------------SLRYMPVGIGRLTG 144 (418)
Q Consensus 91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------------------------~~~~~~~~l~~l~~ 144 (418)
+..+++|+.|++++|. ...++..++.+++|++|+++... ....+|..+..+++
T Consensus 216 ~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence 5566667777766665 33355555556666666654321 22334444555566
Q ss_pred cceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeec----------ccc
Q 014826 145 LRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF----------DKK 214 (418)
Q Consensus 145 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~ 214 (418)
|++|++.++... .......+..+++|+.+++.. .+.+ .........+++|++|++.+ +..
T Consensus 295 L~~L~Ls~~~l~------~~~~~~~~~~~~~L~~L~L~~--~~~~--~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 295 IRKLDLLYALLE------TEDHCTLIQKCPNLEVLETRN--VIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp CCEEEETTCCCC------HHHHHHHHTTCTTCCEEEEEG--GGHH--HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred CcEEecCCCcCC------HHHHHHHHHhCcCCCEEeccC--ccCH--HHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 666666555422 111111123344444444331 1111 11222234466777777773 211
Q ss_pred cCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCC---CCCCCCC-------CCCC
Q 014826 215 KEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCE---NCEQLPP-------LGKL 283 (418)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~---~~~~~~~-------l~~l 283 (418)
. ....+......+++|++|+++.+.+.+..+..++ .+++|+.|+++++. .....|. +..+
T Consensus 365 ~---------~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 365 V---------SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp C---------CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred c---------CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 1 2222333344567788887766656555555555 37788888886332 2222211 3457
Q ss_pred Cccchhccccccc-ceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEE
Q 014826 284 PSLEQLFISYMSS-VKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSL 362 (418)
Q Consensus 284 ~~L~~L~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L 362 (418)
++|+.|++++|.. +.......+ ...+++|++|++++|. +++...... +..+++|++|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~---------------~~~~~~L~~L~L~~n~-l~~~~~~~~------~~~~~~L~~L 493 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYI---------------GQYSPNVRWMLLGYVG-ESDEGLMEF------SRGCPNLQKL 493 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHH---------------HHSCTTCCEEEECSCC-SSHHHHHHH------HTCCTTCCEE
T ss_pred CCCCEEEEecCCCCccHHHHHHH---------------HHhCccceEeeccCCC-CCHHHHHHH------HhcCcccCee
Confidence 7788888876542 111111110 2247888888888753 443222111 2368999999
Q ss_pred EEecCCCCCc--CCccccCCCCccEEEeccCC
Q 014826 363 VIDSCYELKA--LPDHIHQTTTLKRLWILNCG 392 (418)
Q Consensus 363 ~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~ 392 (418)
++++|+ +++ ++.....+++|++|++++|+
T Consensus 494 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 494 EMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 999996 543 34445568999999999999
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1e-22 Score=187.62 Aligned_cols=233 Identities=20% Similarity=0.234 Sum_probs=168.5
Q ss_pred ccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecc
Q 014826 71 LVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGE 150 (418)
Q Consensus 71 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 150 (418)
..++++|+++++.++.+|..+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 47889999999998888888888999999999998844 88888889999999999998554 78888888999999988
Q ss_pred eeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhh
Q 014826 151 FRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLL 230 (418)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
.+|......+ ..+.. .. ..
T Consensus 158 ~~n~~~~~~p-------~~~~~----------------------------------~~--------------------~~ 176 (328)
T 4fcg_A 158 RACPELTELP-------EPLAS----------------------------------TD--------------------AS 176 (328)
T ss_dssp EEETTCCCCC-------SCSEE----------------------------------EC---------------------C
T ss_pred CCCCCccccC-------hhHhh----------------------------------cc--------------------ch
Confidence 8876542111 00000 00 01
Q ss_pred hhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCC
Q 014826 231 EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESD 310 (418)
Q Consensus 231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 310 (418)
..+..+++|++|++++|.+. .+|.++..+++|+.|++++|.+.+..+.+..+++|+.|++++|...+.++..
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~------- 248 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI------- 248 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-------
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-------
Confidence 11233566777777777554 6666777777777777777776654444667777777777777755544432
Q ss_pred ccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEecc
Q 014826 311 RHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILN 390 (418)
Q Consensus 311 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 390 (418)
+..+++|+.|++++|..+..++.... .+++|++|++++|+.+..+|..+.++++|+.+.+..
T Consensus 249 ----------~~~l~~L~~L~L~~n~~~~~~p~~~~--------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 249 ----------FGGRAPLKRLILKDCSNLLTLPLDIH--------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ----------TTCCCCCCEEECTTCTTCCBCCTTGG--------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ----------hcCCCCCCEEECCCCCchhhcchhhh--------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 34677888888888777776665544 788899999999888888888888889999888875
Q ss_pred CC
Q 014826 391 CG 392 (418)
Q Consensus 391 c~ 392 (418)
+.
T Consensus 311 ~~ 312 (328)
T 4fcg_A 311 HL 312 (328)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.8e-24 Score=196.97 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=84.8
Q ss_pred CCccEEecCCCCCcH--HHHHhhccccccceeeeCC-CCCc-cCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826 48 TSLRALDVSQVSLPT--EILRNIKKLVHLRYLNLRF-PKIV-KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH 123 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (418)
.++++|+++++.+.+ .+|..+.++++|++|++++ +.+. .+|..+..+++|++|++++|.+.+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888666 6777788888888888884 6655 67777888888888888888866677878888888888
Q ss_pred EeccCCcccccCCcccccccccceecceeecC
Q 014826 124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
|++++|.+.+.+|..+..+++|++|++.+|..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 88888876667787888888888887766654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=5.5e-23 Score=190.10 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=197.1
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. ++|++|++++|. ++. ..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 117 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNND-----ISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC
T ss_pred cccCCCCC--CCCeEEECCCCc-----CCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc
Confidence 45676654 699999999998 444 2344589999999999999997766678899999999999999999998
Q ss_pred chhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccc--cCCcccccccccceecceeecCCCCCCCccc
Q 014826 88 PETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKA 164 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 164 (418)
|..+. ++|++|++++|.+ ..++ ..++++++|++|++++|.... ..+..+..+ +|+.|++.++....
T Consensus 118 ~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~------- 186 (332)
T 2ft3_A 118 PPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG------- 186 (332)
T ss_dssp CSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-------
T ss_pred Ccccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-------
Confidence 86654 8999999999994 4554 458999999999999996642 556677777 89999887766441
Q ss_pred cccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEE
Q 014826 165 CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEI 244 (418)
Q Consensus 165 ~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 244 (418)
....+ .++|++|++++|... ...+..+..+++|++|++
T Consensus 187 -l~~~~------------------------------~~~L~~L~l~~n~i~-----------~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 187 -IPKDL------------------------------PETLNELHLDHNKIQ-----------AIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp -CCSSS------------------------------CSSCSCCBCCSSCCC-----------CCCTTSSTTCTTCSCCBC
T ss_pred -cCccc------------------------------cCCCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEEC
Confidence 00000 145666777666542 112345666788888888
Q ss_pred eeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccC
Q 014826 245 QFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAF 324 (418)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (418)
++|.+....+.++..+++|+.|++++|.+......+..+++|+.|++++|. ++.++...+..... ...+
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~----------~~~~ 293 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGF----------GVKR 293 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSC----------CSSS
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccccc----------cccc
Confidence 888776666667788888888888888776333337778888888888887 66666554432100 1235
Q ss_pred CcccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826 325 PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY 368 (418)
Q Consensus 325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 368 (418)
++|+.+++.+++ +..+... ......+++|+.+++.+|.
T Consensus 294 ~~l~~L~l~~N~-~~~~~~~-----~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 294 AYYNGISLFNNP-VPYWEVQ-----PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBSEEECCSSS-SCGGGSC-----GGGGTTBCCSTTEEC----
T ss_pred ccccceEeecCc-ccccccC-----cccccccchhhhhhccccc
Confidence 778888888754 3322111 1122367888888887764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.1e-22 Score=188.04 Aligned_cols=284 Identities=13% Similarity=0.089 Sum_probs=206.0
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
..+|..+. ++|++|++++|. +++ ..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 115 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNK-----ITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSC-----CCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred cccCccCC--CCCeEEECCCCc-----CCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc
Confidence 45666554 689999999998 444 2233588999999999999997766678899999999999999999988
Q ss_pred chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccc--cCCcccccccccceecceeecCCCCCCCcccc
Q 014826 88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKAC 165 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 165 (418)
|..+. ++|++|++++|.+....+..++++++|++|++++|.... ..+..+.++++|+.|++.++....
T Consensus 116 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 185 (330)
T 1xku_A 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------- 185 (330)
T ss_dssp CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--------
T ss_pred Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--------
Confidence 86554 799999999999554445568999999999999996643 566778899999999987765431
Q ss_pred ccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEe
Q 014826 166 RLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQ 245 (418)
Q Consensus 166 ~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (418)
++. . ..++|+.|++++|... ...+..+..+++|++|+++
T Consensus 186 ----l~~------------------------~--~~~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 186 ----IPQ------------------------G--LPPSLTELHLDGNKIT-----------KVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp ----CCS------------------------S--CCTTCSEEECTTSCCC-----------EECTGGGTTCTTCCEEECC
T ss_pred ----CCc------------------------c--ccccCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEECC
Confidence 000 0 0146778888777642 2224566778899999999
Q ss_pred eecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCC
Q 014826 246 FNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFP 325 (418)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (418)
+|.+....+.++..+++|+.|++++|.+......+..+++|+.|++++|. ++.++...+..... ....+
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~----------~~~~~ 293 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGY----------NTKKA 293 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSC----------CTTSC
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCccc----------ccccc
Confidence 99777666667888999999999999877443348889999999999988 77776655432100 12357
Q ss_pred cccccccccccccccccccccccCCcccccCCCccEEEEecC
Q 014826 326 KLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC 367 (418)
Q Consensus 326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 367 (418)
.++.+++.+.+ +..+... ......+++++.+++++|
T Consensus 294 ~l~~l~l~~N~-~~~~~i~-----~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 294 SYSGVSLFSNP-VQYWEIQ-----PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSEEECCSSS-SCGGGSC-----GGGGTTCCCGGGEEC---
T ss_pred cccceEeecCc-ccccccC-----ccccccccceeEEEeccc
Confidence 78888888743 3333221 122335678888888876
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.6e-23 Score=192.97 Aligned_cols=223 Identities=23% Similarity=0.277 Sum_probs=136.8
Q ss_pred CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826 47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126 (418)
Q Consensus 47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (418)
...+++|+++++.+. .+|..+.++++|++|++++|.+..+|..+..+++|++|++++|. +..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 356666666666533 45555555666666666666666666656666666666666665 3355666666666666666
Q ss_pred cCCcccccCCccccc---------ccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhh
Q 014826 127 RGTNSLRYMPVGIGR---------LTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE 197 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 197 (418)
++|...+.+|..+.. +++|++|++.+|... .....+..+++|+.+++...... .. ...
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~-~l----~~~ 224 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLS-AL----GPA 224 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCC-CC----CGG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCC-cC----chh
Confidence 665555555555433 666666666655433 11122333333444333322111 00 012
Q ss_pred cCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC
Q 014826 198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL 277 (418)
Q Consensus 198 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 277 (418)
+..+++|+.|++++|... ...+..+..+++|++|++++|.....+|.++..+++|+.|++++|...+.+
T Consensus 225 l~~l~~L~~L~Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp GGGCTTCCEEECTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred hccCCCCCEEECcCCcch-----------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 445677888888776632 234556677788888888888777778888888888888888888888877
Q ss_pred CC-CCCCCccchhcccccc
Q 014826 278 PP-LGKLPSLEQLFISYMS 295 (418)
Q Consensus 278 ~~-l~~l~~L~~L~L~~~~ 295 (418)
|. ++.+++|+.+++..+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CGGGGGSCTTCEEECCGGG
T ss_pred cHHHhhccCceEEeCCHHH
Confidence 76 7778888877776543
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=6.5e-22 Score=198.92 Aligned_cols=139 Identities=24% Similarity=0.162 Sum_probs=106.7
Q ss_pred CCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc
Q 014826 9 SLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP 88 (418)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 88 (418)
++|..+. +++++|+|++|. ++. +.+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.++.+|
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~-----i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNP-----LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ccCCCCC--cCCCEEEeeCCC-----CCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 4665554 378999999988 554 22345888999999999999865544566888999999999999988877
Q ss_pred -hhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826 89 -ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 89 -~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
..|.++++|++|++++|. +..++ ..++++++|++|++++|.+.. ..|..+..+++|++|++.++...
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 457889999999999988 44454 458889999999999886543 35777888889999888776543
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.3e-22 Score=202.41 Aligned_cols=333 Identities=12% Similarity=0.088 Sum_probs=190.2
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCC-ccEEecCCCC-CcH-HHHHhhccccccceeeeCCCCCcc-----C
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTS-LRALDVSQVS-LPT-EILRNIKKLVHLRYLNLRFPKIVK-----L 87 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~l~~-----l 87 (418)
.+++|++|+|++|. +++..+..+...++. |++|++++|. +.. .++..+.++++|++|++++|.++. +
T Consensus 110 ~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 89999999999997 676555543333555 9999999886 222 344555789999999999998653 4
Q ss_pred chhhhcCCCCcEEeccCccCc----ccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcc
Q 014826 88 PETLCELYNLEKLDISYCFNL----KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRK 163 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 163 (418)
+.....+++|++|+++++... ..++..+.++++|+.|++++|.. ..++..+.++++|+.|++........ .
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~----~ 259 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIG----M 259 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTT----C
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccc----h
Confidence 455678999999999999854 23455567899999999999854 44777788899999998864322100 1
Q ss_pred ccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEE
Q 014826 164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELE 243 (418)
Q Consensus 164 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 243 (418)
......+..+++|+.+++..... ......+..+++|++|++++|.. ........+..+++|++|+
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~Ls~~~l----------~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIRKLDLLYALL----------ETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCCEEEETTCCC----------CHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhhccccccccCccccch-----hHHHHHHhhcCCCcEEecCCCcC----------CHHHHHHHHHhCcCCCEEe
Confidence 11222333344444443332110 01111233445566666655542 2222223344455555555
Q ss_pred EeeecCCCC-CchhhhcCCCccEEEee------------------------------------CCCCCCCCCC-CC-CCC
Q 014826 244 IQFNRGNTV-FPSWMTSLTNLKSLGLS------------------------------------LCENCEQLPP-LG-KLP 284 (418)
Q Consensus 244 l~~~~~~~~-~~~~l~~~~~L~~L~l~------------------------------------~~~~~~~~~~-l~-~l~ 284 (418)
++.+ ..+. ++.....+++|+.|++. .+.+.+.... +. .++
T Consensus 325 L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 325 TRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp EEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred ccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 5522 2221 22222345555555555 3322221111 11 144
Q ss_pred ccchhccccc---ccceeccccccCCCCCccCCCCCccccccCCcccccccccccc-cccccccccccCCcccccCCCcc
Q 014826 285 SLEQLFISYM---SSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLME-LEEWDYGITRTGNTVINIMPHLS 360 (418)
Q Consensus 285 ~L~~L~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~~L~ 360 (418)
+|+.|++.++ ..++..+.+. ........+++|+.|++++|.+ +.+...... ...+++|+
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~-----------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------~~~~~~L~ 466 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDN-----------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPNVR 466 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHH-----------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------HHSCTTCC
T ss_pred CCcEEEEeecCCCccccCchHHH-----------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------HHhCccce
Confidence 4555555421 1122111000 0000033577788888776553 332222111 12488999
Q ss_pred EEEEecCCCCCc--CCccccCCCCccEEEeccCC
Q 014826 361 SLVIDSCYELKA--LPDHIHQTTTLKRLWILNCG 392 (418)
Q Consensus 361 ~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~ 392 (418)
+|++.+| .+++ ++..+..+++|++|+|++|+
T Consensus 467 ~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 467 WMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp EEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred EeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC
Confidence 9999988 4543 34455679999999999998
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.4e-23 Score=201.47 Aligned_cols=346 Identities=16% Similarity=0.069 Sum_probs=232.9
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCC----CccEEecCCCCCcH----HHHHhhccccccceeeeCC
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFREST----SLRALDVSQVSLPT----EILRNIKKLVHLRYLNLRF 81 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 81 (418)
++..+..+++|++|++++|. +++.....++..++ +|++|++++|.+.+ .++..+..+++|++|++++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred HHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC
Confidence 56678889999999999998 77766666666666 79999999999763 5788899999999999999
Q ss_pred CCCccC-chhh-----hcCCCCcEEeccCccCccc----CChhhhccccccEEeccCCcccccCCcccc-----cccccc
Q 014826 82 PKIVKL-PETL-----CELYNLEKLDISYCFNLKE----LPEGIGKLINMKHLLNRGTNSLRYMPVGIG-----RLTGLR 146 (418)
Q Consensus 82 ~~l~~l-~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~ 146 (418)
|.++.. +..+ ...++|++|++++|.+... ++..+..+++|++|++++|.+....+..+. ..++|+
T Consensus 123 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 997632 2222 2356899999999985543 355677889999999999965544333332 356999
Q ss_pred eecceeecCCCCCCCccccccccccCCcccccccccccCCCcchh-hhh-hhhcCCcccccceEeecccccCCCCCcccc
Q 014826 147 TLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVG-EAK-RLELDKKKYLSCLRLRFDKKKEGGERRKNE 224 (418)
Q Consensus 147 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~-~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (418)
+|++.+|...... .......+..+++|+.+++.... +...+ ... ......+++|+.|++++|.... .
T Consensus 203 ~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-------~ 271 (461)
T 1z7x_W 203 ALKLESCGVTSDN---CRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITA-------K 271 (461)
T ss_dssp EEECTTSCCBTTH---HHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-------H
T ss_pred EEEccCCCCcHHH---HHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCH-------H
Confidence 9999888654210 01123344556677777666543 22211 111 1223357899999999997531 0
Q ss_pred chhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-----cCCCccEEEeeCCCCCCCC----CC-CCCCCccchhccccc
Q 014826 225 DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-----SLTNLKSLGLSLCENCEQL----PP-LGKLPSLEQLFISYM 294 (418)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----~~-l~~l~~L~~L~L~~~ 294 (418)
....+...+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+.+.. +. +..+++|+.|++++|
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 1122456667789999999999976554444443 3479999999999876542 22 556799999999999
Q ss_pred ccceeccccccCCCCCccCCCCCccccccCCcccccccccccccc-----cccccccccCCcccccCCCccEEEEecCCC
Q 014826 295 SSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELE-----EWDYGITRTGNTVINIMPHLSSLVIDSCYE 369 (418)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 369 (418)
. +...+...+.... ....++|++|++++| .++ .++.... .+++|++|++++| .
T Consensus 352 ~-i~~~~~~~l~~~l-----------~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~--------~~~~L~~L~l~~N-~ 409 (461)
T 1z7x_W 352 R-LEDAGVRELCQGL-----------GQPGSVLRVLWLADC-DVSDSSCSSLAATLL--------ANHSLRELDLSNN-C 409 (461)
T ss_dssp B-CHHHHHHHHHHHH-----------TSTTCCCCEEECTTS-CCCHHHHHHHHHHHH--------HCCCCCEEECCSS-S
T ss_pred c-cccccHHHHHHHH-----------cCCCCceEEEECCCC-CCChhhHHHHHHHHH--------hCCCccEEECCCC-C
Confidence 6 5443322111000 012679999999996 455 3333333 6899999999999 4
Q ss_pred CCcCCc-----cc-cCCCCccEEEeccCCc
Q 014826 370 LKALPD-----HI-HQTTTLKRLWILNCGP 393 (418)
Q Consensus 370 l~~~~~-----~~-~~~~~L~~L~l~~c~~ 393 (418)
+++... .+ ....+|+.|++.++..
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 543211 11 1245788888877763
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=181.18 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=194.1
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. ++|++|++++|. ++. ..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus 44 ~~iP~~~~--~~L~~L~l~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 44 NSIPSGLT--EAVKSLDLSNNR-----ITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp SSCCTTCC--TTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred cccccccc--ccCcEEECCCCc-----Ccc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 45776555 489999999998 454 2233588999999999999987665567789999999999999999988
Q ss_pred chh-hhcCCCCcEEeccCccCcccCCh--hhhccccccEEeccCCccccc-CCcccccccccceecceeecCCCCCCCcc
Q 014826 88 PET-LCELYNLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRK 163 (418)
Q Consensus 88 ~~~-~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 163 (418)
+.. +..+++|++|++++|. +..+|. .++++++|++|++++|..... .+..+.++++|++|++.++...
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------- 187 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------- 187 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-------
T ss_pred CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-------
Confidence 865 8899999999999998 556765 688999999999999854444 4567889999999999888764
Q ss_pred ccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEE
Q 014826 164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELE 243 (418)
Q Consensus 164 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 243 (418)
......+..+++|+.+++..... ...+.. .+..+++|+.|++++|...... ............++.++
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~---~~~~~~~L~~L~L~~n~l~~~~--------~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQH-ILLLEI---FVDVTSSVECLELRDTDLDTFH--------FSELSTGETNSLIKKFT 255 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCS-TTHHHH---HHHHTTTEEEEEEESCBCTTCC--------CC------CCCCCCEEE
T ss_pred ccCHHHHhccccCCeecCCCCcc-ccchhh---hhhhcccccEEECCCCcccccc--------ccccccccccchhhccc
Confidence 22345566777777777665442 222222 2334689999999998764211 01112234467788999
Q ss_pred EeeecCCCC----CchhhhcCCCccEEEeeCCCCCCCCCC--CCCCCccchhcccccc
Q 014826 244 IQFNRGNTV----FPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMS 295 (418)
Q Consensus 244 l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~ 295 (418)
+..+.+.+. +|.++..+++|+.|++++|.+. .+|. +..+++|+.|++++|+
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 988866553 5677889999999999999887 4554 5889999999999997
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=9.4e-22 Score=177.80 Aligned_cols=207 Identities=15% Similarity=0.068 Sum_probs=91.2
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccC-ChhhhccccccEEe
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKEL-PEGIGKLINMKHLL 125 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 125 (418)
++|++|+++++.+.+..+..+.++++|++|++++|.++.+ |..+..+++|++|++++|..+..+ +..++++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 3455555555443332223344455555555555544433 334444555555555554422222 33444455555555
Q ss_pred ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826 126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS 205 (418)
Q Consensus 126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 205 (418)
+++|.+....+..+.++++|++|++.++.... .....+..+++|+.+++..... .. .....+..+++|+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l-~~---~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------LPDDTFRDLGNLTHLFLHGNRI-SS---VPERAFRGLHSLD 180 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCEEECCSSCC-CE---ECTTTTTTCTTCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------cCHhHhccCCCccEEECCCCcc-cc---cCHHHhcCccccC
Confidence 55543333334444445555555444433220 0000111122222221111100 00 0001123345666
Q ss_pred ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCC
Q 014826 206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQ 276 (418)
Q Consensus 206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 276 (418)
.|++++|... ...+..+..+++|++|++++|.+....+..+..+++|+.|++++|++..+
T Consensus 181 ~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 181 RLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred EEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 6666665532 12234455566666666666655544444566666666666666655443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6.2e-22 Score=184.65 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=156.8
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhc
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE 93 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~ 93 (418)
-.|+.....+.+++. ++. +|. .-.++|++|+++++.+.+..+..+.++++|++|++++|.++.++ ..+.+
T Consensus 28 ~~C~~~~~c~~~~~~-----l~~--iP~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 28 LSCDRNGICKGSSGS-----LNS--IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp CEECTTSEEECCSTT-----CSS--CCT--TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCCCeEeeCCCCC-----ccc--ccc--cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 355555666666665 333 332 12246777777777754433345677777777777777776553 45677
Q ss_pred CCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCc--ccccccccceecceeecCCCCCCCccccccccc
Q 014826 94 LYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPV--GIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL 170 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 170 (418)
+++|++|++++|. +..++.. ++++++|++|++++|.+. .+|. .+.++++|++|++.++.... .
T Consensus 99 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~------~------ 164 (353)
T 2z80_A 99 LGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT------K------ 164 (353)
T ss_dssp CTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC------E------
T ss_pred CCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc------c------
Confidence 7777777777777 4445543 667777777777777433 3443 56667777777666553210 0
Q ss_pred cCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCC
Q 014826 171 KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGN 250 (418)
Q Consensus 171 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (418)
+ ....+..+++|++|++++|... ...+..+..+++|++|++++|.+
T Consensus 165 ----------------~------~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~l~~l~~L~~L~l~~n~l- 210 (353)
T 2z80_A 165 ----------------I------QRKDFAGLTFLEELEIDASDLQ-----------SYEPKSLKSIQNVSHLILHMKQH- 210 (353)
T ss_dssp ----------------E------CTTTTTTCCEEEEEEEEETTCC-----------EECTTTTTTCSEEEEEEEECSCS-
T ss_pred ----------------c------CHHHccCCCCCCEEECCCCCcC-----------ccCHHHHhccccCCeecCCCCcc-
Confidence 0 0012334566777777766532 22244555666777777777644
Q ss_pred CCCchh-hhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccc
Q 014826 251 TVFPSW-MTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKS 329 (418)
Q Consensus 251 ~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 329 (418)
..++.. +..+++|+.|++++|.+.+..+. .+.. ....+.++.
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------------~l~~-------------~~~~~~l~~ 253 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFS------------------------ELST-------------GETNSLIKK 253 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------------------------CCCCCCE
T ss_pred ccchhhhhhhcccccEEECCCCcccccccc------------------------cccc-------------ccccchhhc
Confidence 233332 33566777777777655432211 0000 011222333
Q ss_pred cccccc----cccccccccccccCCcccccCCCccEEEEecCCCCCcCCcc-ccCCCCccEEEeccCCchh
Q 014826 330 LRIEGL----MELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDH-IHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 330 L~l~~~----~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~ 395 (418)
++++++ ..+..++... ..+++|++|++++| .++.+|.. +..+++|++|++++|+..+
T Consensus 254 l~L~~~~l~~~~l~~l~~~l--------~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLL--------NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHH--------HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccCcchhhhHHHH--------hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 333321 1122232222 26788888888888 67777765 3678888888888887543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.2e-21 Score=176.18 Aligned_cols=234 Identities=21% Similarity=0.185 Sum_probs=170.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCCCc
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPKIV 85 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~ 85 (418)
.++|..+. ++|++|++++|. ++. +.+..|.++++|++|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~-----l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNK-----LQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSC-----CCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred ccCCCCCC--CCCCEEECCCCc-----cCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence 45666554 588899999887 443 2234467888999999988875422 2344566888999999998888
Q ss_pred cCchhhhcCCCCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcc
Q 014826 86 KLPETLCELYNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRK 163 (418)
Q Consensus 86 ~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 163 (418)
.+|..+..+++|++|++++|. +..++ ..+.++++|++|++++|......+..+..+++|++|++.++... .
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~ 164 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------E 164 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG------G
T ss_pred cChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc------c
Confidence 888778888999999998888 44443 36788888999999888766667777888888888887766543 0
Q ss_pred ccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEE
Q 014826 164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELE 243 (418)
Q Consensus 164 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 243 (418)
..... .+..+++|+.|++++|... ...+..+..+++|++|+
T Consensus 165 ~~~~~----------------------------~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 165 NFLPD----------------------------IFTELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp GEECS----------------------------CCTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEE
T ss_pred ccchh----------------------------HHhhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEE
Confidence 00111 2344567888888877642 22245667788999999
Q ss_pred EeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC-ccchhcccccc
Q 014826 244 IQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP-SLEQLFISYMS 295 (418)
Q Consensus 244 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~-~L~~L~L~~~~ 295 (418)
+++|.+....+..+..+++|+.|++++|.+.+..+. +..++ +|+.|++++|+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 999977666666778899999999999988776664 67774 89999999987
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7e-21 Score=183.54 Aligned_cols=224 Identities=16% Similarity=0.120 Sum_probs=135.6
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEe
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLL 125 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ 125 (418)
++|++|++++|.+.+..+..+.++++|++|++++|.+..++ ..+.++++|++|++++|. +..++ ..++.+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 45666666666544444445556666666666666655443 445556666666666665 33333 2355566666666
Q ss_pred ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826 126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS 205 (418)
Q Consensus 126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 205 (418)
+++|.+....+..+.++++|+.|++.++.... ......+..+++|+.+++..... ... ..+..+++|+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L~L~~n~l-~~~-----~~~~~l~~L~ 221 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEGLFNLKYLNLGMCNI-KDM-----PNLTPLVGLE 221 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCTTCCEEECTTSCC-SSC-----CCCTTCTTCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCcc------ccChhhccCCCCCCEEECCCCcc-ccc-----cccccccccc
Confidence 66664433333345556666666655543321 11112334444444444433221 111 0245567888
Q ss_pred ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826 206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP 284 (418)
Q Consensus 206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~ 284 (418)
.|++++|... ...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..++
T Consensus 222 ~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 222 ELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp EEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred EEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 8888888743 23355677888999999999987777777888899999999999987754444 67889
Q ss_pred ccchhcccccc
Q 014826 285 SLEQLFISYMS 295 (418)
Q Consensus 285 ~L~~L~L~~~~ 295 (418)
+|+.|++.+|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 99999999887
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=8.2e-21 Score=182.41 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=132.3
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEe
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLL 125 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ 125 (418)
+++++|++++|.+.+..+..+.++++|++|++++|.+..++ ..+.++++|++|++++|. +..++. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceee
Confidence 45555666555544333344555556666666655555443 345555566666666555 333332 355555666666
Q ss_pred ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826 126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS 205 (418)
Q Consensus 126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 205 (418)
+++|.+....+..+.++++|++|++.++.... ......+.++++|+.+++..... ...+ .+..+++|+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~ 210 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEGLSNLRYLNLAMCNL-REIP-----NLTPLIKLD 210 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCSSCCEEECTTSCC-SSCC-----CCTTCSSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcc------eeCcchhhcccccCeecCCCCcC-cccc-----ccCCCcccC
Confidence 65554333333345555556655555433221 11112233444444444433211 1111 245567888
Q ss_pred ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826 206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP 284 (418)
Q Consensus 206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~ 284 (418)
.|++++|.+. ...+..+..+++|+.|++++|.+....+.++..+++|+.|++++|.+....+. +..++
T Consensus 211 ~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 211 ELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp EEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred EEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 8888888643 22345677788999999999877777777788899999999999987755444 67889
Q ss_pred ccchhcccccc
Q 014826 285 SLEQLFISYMS 295 (418)
Q Consensus 285 ~L~~L~L~~~~ 295 (418)
+|+.|++.+|+
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 99999998887
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=6.4e-22 Score=197.56 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=91.7
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCC-CCcHH-HHHhhccccccceeeeCCCCCcc-----
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQV-SLPTE-ILRNIKKLVHLRYLNLRFPKIVK----- 86 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~l~~----- 86 (418)
+..+++|++|+|+++. +++..+..+...+++|++|++++| .+.+. ++..+.++++|++|++++|.++.
T Consensus 101 ~~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHCTTCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHhCCCCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 3578899999999987 777566665557999999999988 43333 55556689999999999988553
Q ss_pred CchhhhcCCCCcEEeccCcc--Cc-ccCChhhhccccccEEeccCCcccccCCcccccccccceecc
Q 014826 87 LPETLCELYNLEKLDISYCF--NL-KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGE 150 (418)
Q Consensus 87 l~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 150 (418)
++.....+++|+.|++++|. .. ..++..+..+++|++|++++|.....++..+..+++|+.|++
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 33334467789999998886 11 112222345788888888887444445555566666666654
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=8.6e-20 Score=175.40 Aligned_cols=300 Identities=21% Similarity=0.194 Sum_probs=148.2
Q ss_pred ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccc-cccceeeeCCCCCccCchhhhcCCC
Q 014826 18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKL-VHLRYLNLRFPKIVKLPETLCELYN 96 (418)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~l~~~~~~l~~ 96 (418)
++|++|++++|. ++. ++. ..++|++|++++|.+.+ +... ++|++|++++|.++.+| .+..+++
T Consensus 91 ~~L~~L~l~~n~-----l~~--lp~---~~~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 91 PHLESLVASCNS-----LTE--LPE---LPQSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLP-ELQNSSF 154 (454)
T ss_dssp TTCSEEECCSSC-----CSS--CCC---CCTTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred CCCCEEEccCCc-----CCc--ccc---ccCCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCc-ccCCCCC
Confidence 578888888877 333 232 23678888888776442 2222 57788888888777777 4777788
Q ss_pred CcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccc
Q 014826 97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL 176 (418)
Q Consensus 97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 176 (418)
|++|++++|. +..+|... .+|++|++++|.+.+ +| .++++++|++|++.+|.... +... ..+|
T Consensus 155 L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~---------l~~~--~~~L 217 (454)
T 1jl5_A 155 LKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK---------LPDL--PLSL 217 (454)
T ss_dssp CCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS---------CCCC--CTTC
T ss_pred CCEEECCCCc-CcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc---------CCCC--cCcc
Confidence 8888888877 44455432 477788887774433 55 47777777777777665431 0001 1244
Q ss_pred ccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchh
Q 014826 177 QVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSW 256 (418)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 256 (418)
+.+++..... ...+ .+..+++|+.|++++|.... ++. .+++|++|++++|.+.. +|..
T Consensus 218 ~~L~l~~n~l-~~lp-----~~~~l~~L~~L~l~~N~l~~------------l~~---~~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 218 ESIVAGNNIL-EELP-----ELQNLPFLTTIYADNNLLKT------------LPD---LPPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CEEECCSSCC-SSCC-----CCTTCTTCCEEECCSSCCSS------------CCS---CCTTCCEEECCSSCCSC-CCCC
T ss_pred cEEECcCCcC-Cccc-----ccCCCCCCCEEECCCCcCCc------------ccc---cccccCEEECCCCcccc-cCcc
Confidence 4444433221 1111 13456677777777665421 111 13566666666664432 3332
Q ss_pred hhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCC-CCCcc--ccccCCcccccccc
Q 014826 257 MTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSSSL--VIIAFPKLKSLRIE 333 (418)
Q Consensus 257 l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~L~~L~l~ 333 (418)
.++|+.|++++|.+.+ ++.+ .++|+.|++++|. +..++... . ..+... +...+ ....+++|+.|+++
T Consensus 276 ---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~~~~--~-~L~~L~Ls~N~l~~lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLCDLP--P-SLEELNVSNNKLIELPALPPRLERLIAS 345 (454)
T ss_dssp ---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEECCCC--T-TCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred ---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCcccCCc--C-cCCEEECCCCccccccccCCcCCEEECC
Confidence 3566666666665443 1111 1344444444443 22221100 0 000000 00000 01124667777776
Q ss_pred cccccccccccccccCCcccccCCCccEEEEecCCCCC--cCCccccCC-------------CCccEEEeccCCch
Q 014826 334 GLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELK--ALPDHIHQT-------------TTLKRLWILNCGPL 394 (418)
Q Consensus 334 ~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------~~L~~L~l~~c~~l 394 (418)
++ +++.++. .+++|++|++++|.... .+|..+..+ ++|+.|++++|+..
T Consensus 346 ~N-~l~~lp~-----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 346 FN-HLAEVPE-----------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp SS-CCSCCCC-----------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CC-ccccccc-----------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 63 4444432 25677777777773222 345444444 67777777777643
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=7.9e-21 Score=182.61 Aligned_cols=99 Identities=20% Similarity=0.077 Sum_probs=39.4
Q ss_pred cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhcccccc-------------ceeeeCCCC
Q 014826 17 VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHL-------------RYLNLRFPK 83 (418)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~ 83 (418)
.++|+.|+++++. ++. +|..+.++++|++|++++|.+.+.+|..++++++| ++|++++|.
T Consensus 10 ~~~L~~L~l~~n~-----l~~--iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-----LTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccchhhhcccCc-----hhh--CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 3566666666665 433 55556666666666666665445555555554443 566666666
Q ss_pred CccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826 84 IVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 84 l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 129 (418)
++.+|.. .++|++|++++|.+. .+|.. +.+|++|++++|
T Consensus 83 l~~lp~~---~~~L~~L~l~~n~l~-~lp~~---~~~L~~L~l~~n 121 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNN 121 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSS
T ss_pred cccCCCC---cCCCCEEEccCCcCC-ccccc---cCCCcEEECCCC
Confidence 5555542 245566666555522 24432 244555555554
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1e-20 Score=172.83 Aligned_cols=242 Identities=17% Similarity=0.130 Sum_probs=172.2
Q ss_pred eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH-HhhccccccceeeeCCCCCccC---chhhhcCCC
Q 014826 21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPKIVKL---PETLCELYN 96 (418)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~ 96 (418)
+.++.+++. ++. +|. .-.++|++|+++++.+. .+| ..+.++++|++|++++|.++.+ +..+..+++
T Consensus 10 ~~l~c~~~~-----l~~--ip~--~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKG-----LTS--VPT--GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSC-----CSS--CCS--CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CEEEcCCCC-----ccc--CCC--CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 466777665 443 332 22368889999888854 444 3467888899999988887644 566777888
Q ss_pred CcEEeccCccCcccCChhhhccccccEEeccCCcccccCC-cccccccccceecceeecCCCCCCCccccccccccCCcc
Q 014826 97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH 175 (418)
Q Consensus 97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 175 (418)
|++|++++|. +..+|..+..+++|++|++++|.+....+ ..+..+++|++|++.++.... ..
T Consensus 80 L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~--------- 142 (306)
T 2z66_A 80 LKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AF--------- 142 (306)
T ss_dssp CCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------CS---------
T ss_pred cCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------cc---------
Confidence 9999998887 55677778888889999988885544333 467778888888776554320 00
Q ss_pred cccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch
Q 014826 176 LQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS 255 (418)
Q Consensus 176 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 255 (418)
...+..+++|+.|++++|... ....+..+..+++|++|++++|.+....+.
T Consensus 143 -------------------~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 143 -------------------NGIFNGLSSLEVLKMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp -------------------TTTTTTCTTCCEEECTTCEEG----------GGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred -------------------hhhcccCcCCCEEECCCCccc----------cccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence 012344578888888887642 123456778899999999999988777788
Q ss_pred hhhcCCCccEEEeeCCCCCCCCC-CCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccC-Ccccccccc
Q 014826 256 WMTSLTNLKSLGLSLCENCEQLP-PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAF-PKLKSLRIE 333 (418)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 333 (418)
++..+++|+.|++++|.+.+..+ .+..+++|+.|++++|. +....... +..+ ++|+.|+++
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE----------------LQHFPSSLAFLNLT 256 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS----------------CCCCCTTCCEEECT
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHH----------------HHhhhccCCEEEcc
Confidence 88899999999999998776544 37889999999999997 44333222 2345 478888887
Q ss_pred cc
Q 014826 334 GL 335 (418)
Q Consensus 334 ~~ 335 (418)
++
T Consensus 257 ~N 258 (306)
T 2z66_A 257 QN 258 (306)
T ss_dssp TC
T ss_pred CC
Confidence 73
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=5.4e-20 Score=177.31 Aligned_cols=244 Identities=18% Similarity=0.137 Sum_probs=187.5
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
..+.++.++.. ...+|..+ .+++++|++++|.++.+ +..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 55 ~~~~v~c~~~~-l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRG-LSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCC-cCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35677777766 34455433 26899999999999876 4678999999999999999655556789999999999999
Q ss_pred CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL 207 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 207 (418)
+|.+....+..+..+++|++|++.+|... ......+..+++|+.+++.....+.... ...+..+++|+.|
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L 201 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELKKLEYIS---EGAFEGLFNLKYL 201 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTCTTCCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCCCccccC---hhhccCCCCCCEE
Confidence 99665555556889999999999888764 1222345666777777666544333322 1245678999999
Q ss_pred EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL 286 (418)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L 286 (418)
++++|.... ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|
T Consensus 202 ~L~~n~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 202 NLGMCNIKD-------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp ECTTSCCSS-------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ECCCCcccc-------------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 999997642 13467789999999999988877888999999999999999988776554 8889999
Q ss_pred chhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826 287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL 335 (418)
Q Consensus 287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 335 (418)
+.|++++|. ++.++... +..+++|+.|++.+.
T Consensus 269 ~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 269 VELNLAHNN-LSSLPHDL----------------FTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECCSSC-CSCCCTTS----------------STTCTTCCEEECCSS
T ss_pred CEEECCCCc-CCccChHH----------------hccccCCCEEEccCC
Confidence 999999997 66666543 346789999999863
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=176.05 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=187.1
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
..+.++..+.. ...+|..+. +++++|++++|.+..++ ..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 44 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKN-LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCC-CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45677777766 445554443 68999999999998775 678999999999999999555445679999999999999
Q ss_pred CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL 207 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 207 (418)
+|.+....+..+..+++|++|++.+|... ......+..+++|+.+++.....+.... ...+..+++|+.|
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L 190 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGELKRLSYIS---EGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTCSSCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCCCCCcceeC---cchhhcccccCee
Confidence 99665444557889999999999888764 2222345666777777666544333222 1245678999999
Q ss_pred EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL 286 (418)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L 286 (418)
++++|.... ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|
T Consensus 191 ~L~~n~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 191 NLAMCNLRE-------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp ECTTSCCSS-------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred cCCCCcCcc-------------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 999997641 12467789999999999988777788899999999999999988766554 8899999
Q ss_pred chhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccc
Q 014826 287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEG 334 (418)
Q Consensus 287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 334 (418)
+.|+|++|. ++.++... +..+++|+.|++++
T Consensus 258 ~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 258 VEINLAHNN-LTLLPHDL----------------FTPLHHLERIHLHH 288 (440)
T ss_dssp CEEECTTSC-CCCCCTTT----------------TSSCTTCCEEECCS
T ss_pred CEEECCCCC-CCccChhH----------------hccccCCCEEEcCC
Confidence 999999997 66666543 34678999999986
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.9e-20 Score=171.73 Aligned_cols=268 Identities=15% Similarity=0.070 Sum_probs=158.6
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCc
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLE 98 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~ 98 (418)
+++..+++++. +.. .....+..+++|++|++++|.+.+..+..+.++++|++|++++|.+...+. +..+++|+
T Consensus 11 ~l~i~~ls~~~-----l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~ 83 (317)
T 3o53_A 11 RYKIEKVTDSS-----LKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLR 83 (317)
T ss_dssp EEEEESCCTTT-----HHH-HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCC
T ss_pred ceeEeeccccc-----hhh-hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCC
Confidence 45555666654 443 455556667788888888887666556677788888888888888775554 77788888
Q ss_pred EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccc
Q 014826 99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV 178 (418)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 178 (418)
+|++++|. +..++ ..++|++|++++|.+.+..+. .+++|++|++.++.... .....+..+++|+.
T Consensus 84 ~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-------~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 84 TLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------LRDLDEGCRSRVQY 148 (317)
T ss_dssp EEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-------GGGBCTGGGSSEEE
T ss_pred EEECcCCc-ccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-------ccchhhhccCCCCE
Confidence 88888877 33333 347788888888754433222 35677777777666541 11123334445555
Q ss_pred ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826 179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT 258 (418)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 258 (418)
+++........... .....+++|+.|++++|.... . .....+++|++|++++|.+. .++..+.
T Consensus 149 L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~N~l~~------------~-~~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 211 (317)
T 3o53_A 149 LDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYD------------V-KGQVVFAKLKTLDLSSNKLA-FMGPEFQ 211 (317)
T ss_dssp EECTTSCCCEEEGG---GGGGGTTTCCEEECTTSCCCE------------E-ECCCCCTTCCEEECCSSCCC-EECGGGG
T ss_pred EECCCCCCCcccHH---HHhhccCcCCEEECCCCcCcc------------c-ccccccccCCEEECCCCcCC-cchhhhc
Confidence 44443321110000 011235677777777776431 1 22234677777777777554 3444566
Q ss_pred cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccccc
Q 014826 259 SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMEL 338 (418)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 338 (418)
.+++|+.|++++|.+......+..+++|+.|++++|+........+ ...+++|+.+++.+++.+
T Consensus 212 ~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~----------------~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF----------------FSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH----------------HHTCHHHHHHHHHHHHHH
T ss_pred ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH----------------HhccccceEEECCCchhc
Confidence 7777777777777666433336677777777777776220111111 345666777766655555
Q ss_pred ccc
Q 014826 339 EEW 341 (418)
Q Consensus 339 ~~l 341 (418)
+..
T Consensus 276 ~~~ 278 (317)
T 3o53_A 276 TGQ 278 (317)
T ss_dssp HSS
T ss_pred cCC
Confidence 443
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1e-21 Score=196.11 Aligned_cols=142 Identities=14% Similarity=0.072 Sum_probs=92.8
Q ss_pred ccccccceeeEEeecCCCCCC-C--------CccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhc-cccccceeeeCC
Q 014826 12 VSTRRVKRMRTLLISASGSDH-S--------SLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIK-KLVHLRYLNLRF 81 (418)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~-~--------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~ 81 (418)
..+.++++|++|+++++.... . .....++...+..+++|++|+++++.+.+..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 356778888888888875100 0 111224566667888888888888887666555554 688888888888
Q ss_pred C-CCcc--CchhhhcCCCCcEEeccCccCcccCChh----hhccccccEEeccCCc--cc-ccCCcccccccccceecce
Q 014826 82 P-KIVK--LPETLCELYNLEKLDISYCFNLKELPEG----IGKLINMKHLLNRGTN--SL-RYMPVGIGRLTGLRTLGEF 151 (418)
Q Consensus 82 ~-~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~ 151 (418)
| .++. ++..+..+++|++|++++|.+....+.. ...+++|++|++++|. .. ..+...+..+++|++|++.
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 4553 5555667888888888888744333322 3356788888888874 11 1122223456888888887
Q ss_pred ee
Q 014826 152 RV 153 (418)
Q Consensus 152 ~~ 153 (418)
++
T Consensus 220 ~~ 221 (594)
T 2p1m_B 220 RA 221 (594)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.2e-21 Score=176.18 Aligned_cols=264 Identities=13% Similarity=0.062 Sum_probs=179.2
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (418)
..++..+++.+.+.......+..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+ .++ ++.+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEEC
Confidence 34667788888755555556677889999999999998776 678999999999999998544 333 889999999999
Q ss_pred cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826 127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC 206 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 206 (418)
++|.+. . +...++|++|++.++.... .... .+++|+.
T Consensus 88 s~n~l~-~----l~~~~~L~~L~l~~n~l~~-------~~~~-------------------------------~~~~L~~ 124 (317)
T 3o53_A 88 NNNYVQ-E----LLVGPSIETLHAANNNISR-------VSCS-------------------------------RGQGKKN 124 (317)
T ss_dssp CSSEEE-E----EEECTTCCEEECCSSCCSE-------EEEC-------------------------------CCSSCEE
T ss_pred cCCccc-c----ccCCCCcCEEECCCCccCC-------cCcc-------------------------------ccCCCCE
Confidence 999543 2 2244788888887765431 0000 1245677
Q ss_pred eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCCCCCCCc
Q 014826 207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPPLGKLPS 285 (418)
Q Consensus 207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~l~~ 285 (418)
|++++|... ......+..+++|++|++++|.+....+..+. .+++|+.|++++|.+... +....+++
T Consensus 125 L~l~~N~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~ 192 (317)
T 3o53_A 125 IYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAK 192 (317)
T ss_dssp EECCSSCCC-----------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTT
T ss_pred EECCCCCCC-----------CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccccccc
Confidence 777766542 11223445567788888887766655555553 677888888888865543 44445778
Q ss_pred cchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEe
Q 014826 286 LEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVID 365 (418)
Q Consensus 286 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~ 365 (418)
|+.|++++|. ++.++.. +..+++|+.|+++++ .++.++.... .+++|++|+++
T Consensus 193 L~~L~Ls~N~-l~~l~~~-----------------~~~l~~L~~L~L~~N-~l~~l~~~~~--------~l~~L~~L~l~ 245 (317)
T 3o53_A 193 LKTLDLSSNK-LAFMGPE-----------------FQSAAGVTWISLRNN-KLVLIEKALR--------FSQNLEHFDLR 245 (317)
T ss_dssp CCEEECCSSC-CCEECGG-----------------GGGGTTCSEEECTTS-CCCEECTTCC--------CCTTCCEEECT
T ss_pred CCEEECCCCc-CCcchhh-----------------hcccCcccEEECcCC-cccchhhHhh--------cCCCCCEEEcc
Confidence 8888888876 5555443 335678888888874 5666554333 67788888888
Q ss_pred cCCCC-CcCCccccCCCCccEEEeccCCchh
Q 014826 366 SCYEL-KALPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 366 ~c~~l-~~~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
+|+.. ..++..+..++.|+.+++.+|+.+.
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 87533 2445556667777777777665444
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=3e-21 Score=176.74 Aligned_cols=252 Identities=17% Similarity=0.157 Sum_probs=179.3
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcH-HHHHhh-------ccccccceeeeCCCCC
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPT-EILRNI-------KKLVHLRYLNLRFPKI 84 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~-------~~l~~L~~L~l~~~~l 84 (418)
.+.+.++|+.|++++|.+ .+.. .++. . |++|+++++.+.. .++..+ .++++|++|++++|.+
T Consensus 38 ~~~~~~~L~~l~l~~n~l---~~p~-~~~~----~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE---ADLG-QFTD----I--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEEECTTHHHHCCTT---CCCH-HHHH----H--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred EEccCCCceeEeeccccc---ccHH-HHHH----H--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence 456778899999999982 2222 1222 1 7777887776421 222222 3689999999999998
Q ss_pred c-cCchhh--hcCCCCcEEeccCccCcccCChhhhcc-----ccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 85 V-KLPETL--CELYNLEKLDISYCFNLKELPEGIGKL-----INMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 85 ~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+ .+|..+ ..+++|++|++++|.+.. .|..++.+ ++|++|++++|.+.+..+..+.++++|++|++.+|...
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 7 677655 889999999999998444 47777777 89999999999776666688999999999999888754
Q ss_pred CCCCCcccccccc--ccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCC
Q 014826 157 GDVDGRKACRLES--LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALR 234 (418)
Q Consensus 157 ~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (418)
+ ....... +..+++|+.+++.... +...+......+..+++|+.|++++|..... .....+.
T Consensus 187 ~-----~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~ 250 (312)
T 1wwl_A 187 G-----ERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA----------AGAPSCD 250 (312)
T ss_dssp H-----HHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS----------CCCSCCC
T ss_pred c-----chHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc----------cchhhhh
Confidence 1 0011112 2566677776666543 2222222233345678999999999976421 1113345
Q ss_pred CCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826 235 PPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 295 (418)
.+++|++|++++|.+. .+|.++. ++|+.|++++|.+.+. |.+..+++|+.|++++|+
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 5789999999999765 7777665 8999999999988765 668899999999999997
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=8.9e-20 Score=164.77 Aligned_cols=220 Identities=18% Similarity=0.067 Sum_probs=168.7
Q ss_pred cEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826 51 RALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 129 (418)
++++.+++. ...+|.. -.++|++|+++++.++.++ ..+..+++|++|++++|.+....+..++++++|++|++++|
T Consensus 14 ~~~~c~~~~-l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSC-CSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCC-cccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567777776 3344433 2568999999999999877 56889999999999999855555778999999999999999
Q ss_pred ccccc-CCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceE
Q 014826 130 NSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLR 208 (418)
Q Consensus 130 ~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 208 (418)
..... .+..+..+++|++|++.++.... .....+..+++|+.+++...... . .....+..+++|+.|+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE-------LGPGLFRGLAALQYLYLQDNALQ-A---LPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCCEEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCE-------ECHhHhhCCcCCCEEECCCCccc-c---cCHhHhccCCCccEEE
Confidence 63444 47788999999999998887651 22334566677777666543321 1 1112356789999999
Q ss_pred eecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccc
Q 014826 209 LRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLE 287 (418)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~ 287 (418)
+++|... ......+..+++|++|++++|.+....|.++..+++|+.|++++|.+.+..+. +..+++|+
T Consensus 160 l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 160 LHGNRIS-----------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CCCCccc-----------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 9998753 12223477789999999999988777788899999999999999988765443 78899999
Q ss_pred hhcccccc
Q 014826 288 QLFISYMS 295 (418)
Q Consensus 288 ~L~L~~~~ 295 (418)
.|++++|+
T Consensus 229 ~L~l~~N~ 236 (285)
T 1ozn_A 229 YLRLNDNP 236 (285)
T ss_dssp EEECCSSC
T ss_pred EEeccCCC
Confidence 99999998
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=6.7e-19 Score=174.53 Aligned_cols=257 Identities=20% Similarity=0.183 Sum_probs=142.9
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCc
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLE 98 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~ 98 (418)
.++.|+++++. ++. +|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|+
T Consensus 41 ~l~~L~ls~n~-----L~~--lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESG-----LTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLL 104 (622)
T ss_dssp CCCEEECCSSC-----CSC--CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCC
T ss_pred CCcEEEecCCC-----cCc--cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCC
Confidence 45666666655 332 222121 55666666666533 2332 35566666666666665554 456666
Q ss_pred EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccc
Q 014826 99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV 178 (418)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 178 (418)
+|++++|. +..+|. .+++|+.|++++|. ...+|.. +++|++|++.+|...
T Consensus 105 ~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~---------------------- 154 (622)
T 3g06_A 105 ELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA---------------------- 154 (622)
T ss_dssp EEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS----------------------
T ss_pred EEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC----------------------
Confidence 66666665 334443 34556666666653 2334432 255555555544332
Q ss_pred ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826 179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT 258 (418)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 258 (418)
.++. ...+|+.|++.+|.+.. ++ ..+++|+.|++++|.+. .+|.
T Consensus 155 -------~l~~----------~~~~L~~L~L~~N~l~~------------l~---~~~~~L~~L~Ls~N~l~-~l~~--- 198 (622)
T 3g06_A 155 -------SLPA----------LPSELCKLWAYNNQLTS------------LP---MLPSGLQELSVSDNQLA-SLPT--- 198 (622)
T ss_dssp -------CCCC----------CCTTCCEEECCSSCCSC------------CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred -------CcCC----------ccCCCCEEECCCCCCCC------------Cc---ccCCCCcEEECCCCCCC-CCCC---
Confidence 0110 12456666666665421 11 33567777777777443 2332
Q ss_pred cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccccc
Q 014826 259 SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMEL 338 (418)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 338 (418)
..++|+.|++++|.+.. ++. .+++|+.|++++|. ++.++ ..+++|+.|+++++ ++
T Consensus 199 ~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp--------------------~~l~~L~~L~Ls~N-~L 253 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLP--------------------VLPSELKELMVSGN-RL 253 (622)
T ss_dssp CCTTCCEEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCC--------------------CCCTTCCEEECCSS-CC
T ss_pred ccchhhEEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCC--------------------CCCCcCcEEECCCC-CC
Confidence 24677777777775552 332 24667777777775 44443 14567777777773 55
Q ss_pred ccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCch
Q 014826 339 EEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l 394 (418)
+.++. .+++|++|++++| .++.+|..+..+++|+.|++++|+..
T Consensus 254 ~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 254 TSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 55442 3567777777777 56677766677777777777777643
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.4e-20 Score=172.37 Aligned_cols=202 Identities=17% Similarity=0.111 Sum_probs=100.4
Q ss_pred ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc--cCchhhh-------cCCCCcEEeccCccCcccCChhh
Q 014826 45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV--KLPETLC-------ELYNLEKLDISYCFNLKELPEGI 115 (418)
Q Consensus 45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l 115 (418)
...++|++|+++++.+ .+|..+... |++|+++++.+. .+|..+. ++++|++|++++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3444566666666654 333333222 566666666653 3444333 46666666666666555555544
Q ss_pred --hccccccEEeccCCcccccCCcccccc-----cccceecceeecCCCCCCCccccccccccCCcccccccccccCCCc
Q 014826 116 --GKLINMKHLLNRGTNSLRYMPVGIGRL-----TGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVS 188 (418)
Q Consensus 116 --~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~ 188 (418)
+.+++|++|++++|.+.+. |..+..+ ++|++|++.++.... ..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-------~~---------------------- 165 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-------FS---------------------- 165 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-------CC----------------------
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-------ch----------------------
Confidence 5666666666666644333 5555544 566666655544320 00
Q ss_pred chhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhC--CCCCCCcEEEEeeecCCC--CCch-hhhcCCCc
Q 014826 189 DVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEAL--RPPLDLKELEIQFNRGNT--VFPS-WMTSLTNL 263 (418)
Q Consensus 189 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~--~~~~-~l~~~~~L 263 (418)
...+..+++|+.|++++|... .....+..+ ..+++|++|++++|.+.. ..+. .+..+++|
T Consensus 166 ------~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 166 ------CEQVRVFPALSTLDLSDNPEL---------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp ------TTTCCCCSSCCEEECCSCTTC---------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred ------HHHhccCCCCCEEECCCCCcC---------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 001233455556666555421 111122222 455666666666664431 1121 22355666
Q ss_pred cEEEeeCCCCCCCCC--CCCCCCccchhcccccc
Q 014826 264 KSLGLSLCENCEQLP--PLGKLPSLEQLFISYMS 295 (418)
Q Consensus 264 ~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~ 295 (418)
+.|++++|.+.+..+ .+..+++|+.|++++|.
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 666666665554332 23344555555555554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.7e-20 Score=181.99 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=37.3
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccC
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRG 128 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 128 (418)
+|++|++++|.+.+..|..+..+++|++|++++|.++..++ +..+++|++|++++|. +..++. .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcC
Confidence 55555555555444334445555555555555555543333 4455555555555554 222221 24555555555
Q ss_pred C
Q 014826 129 T 129 (418)
Q Consensus 129 ~ 129 (418)
|
T Consensus 109 N 109 (487)
T 3oja_A 109 N 109 (487)
T ss_dssp S
T ss_pred C
Confidence 5
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.1e-19 Score=168.24 Aligned_cols=227 Identities=16% Similarity=0.100 Sum_probs=132.3
Q ss_pred CCCccEEecCCCCCcHHHHHhhccc--cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCccc-CChhhhccccccE
Q 014826 47 STSLRALDVSQVSLPTEILRNIKKL--VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKE-LPEGIGKLINMKH 123 (418)
Q Consensus 47 ~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 123 (418)
-..++.++++++.+.. ..+.++ +++++|+++++.++..+..+..+++|++|++++|.+... ++..+..+++|++
T Consensus 46 ~~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 46 ESLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp STTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred chhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3456777777766442 234444 667777777777665544455677777777777764433 5556667777777
Q ss_pred EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826 124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203 (418)
Q Consensus 124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 203 (418)
|++++|...+..+..+..+++|++|++.+|... .. ......+..+++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-------------------------------~~--~~l~~~~~~~~~ 169 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-------------------------------SE--FALQTLLSSCSR 169 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-------------------------------CH--HHHHHHHHHCTT
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-------------------------------CH--HHHHHHHhcCCC
Confidence 777777555455556666677777766554211 00 011112344567
Q ss_pred ccceEeecc-cccCCCCCccccchhhhhhhCCCCC-CCcEEEEeeec--CC-CCCchhhhcCCCccEEEeeCCC-CCCC-
Q 014826 204 LSCLRLRFD-KKKEGGERRKNEDDQLLLEALRPPL-DLKELEIQFNR--GN-TVFPSWMTSLTNLKSLGLSLCE-NCEQ- 276 (418)
Q Consensus 204 L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~- 276 (418)
|++|++++| .. ....+...+..++ +|++|++++|. +. ..++..+..+++|+.|++++|. ..+.
T Consensus 170 L~~L~l~~~~~l----------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 170 LDELNLSWCFDF----------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp CCEEECCCCTTC----------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred CCEEcCCCCCCc----------ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 777777766 43 2222344455566 77777777772 33 2345555677778888877776 3322
Q ss_pred CCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826 277 LPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL 335 (418)
Q Consensus 277 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 335 (418)
++.+..+++|+.|++++|..+.... +.. +..+++|+.|++++|
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~---~~~-------------l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPET---LLE-------------LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGG---GGG-------------GGGCTTCCEEECTTS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHH---HHH-------------HhcCCCCCEEeccCc
Confidence 2336666777777777775222111 111 345677777777765
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.4e-19 Score=170.88 Aligned_cols=252 Identities=15% Similarity=0.091 Sum_probs=144.0
Q ss_pred CCCccccccceeeEEeecCCCCCCCCccHHH---HHHHhccCCCccEEecCCCC---CcHHHHH-------hhccccccc
Q 014826 9 SLPVSTRRVKRMRTLLISASGSDHSSLNAEI---VEELFRESTSLRALDVSQVS---LPTEILR-------NIKKLVHLR 75 (418)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~---~~~~~~~-------~~~~l~~L~ 75 (418)
.++..+..+++|++|+|++|. +++.. ++..+..+++|++|+++++. +.+.+|. .+..+++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHhcCCCccEEECCCCC-----CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 366777888899999999987 55532 44456788899999998863 2333333 346788999
Q ss_pred eeeeCCCCCcc-----CchhhhcCCCCcEEeccCccCcccC----Chhhhcc---------ccccEEeccCCccc-ccCC
Q 014826 76 YLNLRFPKIVK-----LPETLCELYNLEKLDISYCFNLKEL----PEGIGKL---------INMKHLLNRGTNSL-RYMP 136 (418)
Q Consensus 76 ~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l---------~~L~~L~l~~~~~~-~~~~ 136 (418)
+|++++|.++. +|..+..+++|++|++++|.+.... +..+..+ ++|++|++++|.+. ..++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99999988775 6677888899999999998854322 2234444 88999999888654 2333
Q ss_pred ---cccccccccceecceeecCCCCCCCccccccc-cccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecc
Q 014826 137 ---VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLE-SLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFD 212 (418)
Q Consensus 137 ---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 212 (418)
..+..+++|++|++.+|..... ....... .+..+++|+.+++................+..+++|+.|++++|
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~---g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHh---HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 4566788888888877754300 0000111 33344444444444332110001112223444555555555555
Q ss_pred cccCCCCCccccchhhhhhhC--CCCCCCcEEEEeeecCCC----CCchhh-hcCCCccEEEeeCCCCCC
Q 014826 213 KKKEGGERRKNEDDQLLLEAL--RPPLDLKELEIQFNRGNT----VFPSWM-TSLTNLKSLGLSLCENCE 275 (418)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~ 275 (418)
.+.. .....++..+ ..+++|++|++++|.+.. .+|..+ ..+++|+.|++++|.+.+
T Consensus 255 ~i~~-------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 255 LLSA-------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCCH-------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCch-------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 4320 0001122333 224555555555554443 244444 345555555555555443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.4e-18 Score=168.63 Aligned_cols=238 Identities=14% Similarity=0.067 Sum_probs=174.2
Q ss_pred hccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccc
Q 014826 68 IKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLR 146 (418)
Q Consensus 68 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 146 (418)
...+++|++|++++|.++.++ ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+. .++ ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcC
Confidence 344568999999999988765 678899999999999998544443 888999999999998543 222 337888
Q ss_pred eecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccch
Q 014826 147 TLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDD 226 (418)
Q Consensus 147 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (418)
+|++.+|.... . + ...+++|+.|++++|...
T Consensus 103 ~L~L~~N~l~~------~-----------------------~---------~~~l~~L~~L~L~~N~l~----------- 133 (487)
T 3oja_A 103 TLHAANNNISR------V-----------------------S---------CSRGQGKKNIYLANNKIT----------- 133 (487)
T ss_dssp EEECCSSCCCC------E-----------------------E---------ECCCSSCEEEECCSSCCC-----------
T ss_pred EEECcCCcCCC------C-----------------------C---------ccccCCCCEEECCCCCCC-----------
Confidence 88887765441 0 0 011257888888888753
Q ss_pred hhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceecccccc
Q 014826 227 QLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFL 305 (418)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 305 (418)
...+..+..+++|++|++++|.+....|..+. .+++|+.|++++|.+.+. +....+++|+.|++++|. +..++..
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~-- 209 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE-- 209 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG--
T ss_pred CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHh--
Confidence 22344556688999999999987777777775 789999999999986644 555568999999999988 6555543
Q ss_pred CCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCC-CcCCccccCCCCcc
Q 014826 306 GVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYEL-KALPDHIHQTTTLK 384 (418)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~L~ 384 (418)
+..+++|+.|++++ ..+..++.... .+++|+.|++++|+.. ..+|..+..++.|+
T Consensus 210 ---------------~~~l~~L~~L~Ls~-N~l~~lp~~l~--------~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 210 ---------------FQSAAGVTWISLRN-NKLVLIEKALR--------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp ---------------GGGGTTCSEEECTT-SCCCEECTTCC--------CCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred ---------------HcCCCCccEEEecC-CcCcccchhhc--------cCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 34678899999988 45666654433 7789999999988544 24555666788888
Q ss_pred EEEec
Q 014826 385 RLWIL 389 (418)
Q Consensus 385 ~L~l~ 389 (418)
.+.+.
T Consensus 266 ~l~~~ 270 (487)
T 3oja_A 266 TVAKQ 270 (487)
T ss_dssp HHHHH
T ss_pred EEecc
Confidence 77775
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.8e-18 Score=155.40 Aligned_cols=216 Identities=21% Similarity=0.141 Sum_probs=143.4
Q ss_pred CCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc
Q 014826 9 SLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP 88 (418)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 88 (418)
++|..+. ++|++|++++|. ++. ..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++.++
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~-----l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNP-----LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCC-----CCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ccCCCCC--CCccEEECCCCc-----ccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 4666554 478999999887 443 12234788889999999988865544556788889999999998888665
Q ss_pred -hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCCCCCCCccccc
Q 014826 89 -ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166 (418)
Q Consensus 89 -~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 166 (418)
..+.++++|++|++++|.+....+..++++++|++|++++|.+.. .+|..+..+++|++|++.+|.... ..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-------~~ 165 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------IY 165 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-------EC
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-------CC
Confidence 567888999999998888444334468888899999998886554 367788888888888887765441 00
Q ss_pred cccccCCcccccccccccCCCcchhhhhhhhcCCccccc-ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEe
Q 014826 167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS-CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQ 245 (418)
Q Consensus 167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (418)
...+..+. .++.+. .+++++|... .+........+|++|+++
T Consensus 166 ~~~~~~l~-------------------------~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 166 CTDLRVLH-------------------------QMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALD 208 (276)
T ss_dssp GGGGHHHH-------------------------TCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECC
T ss_pred HHHhhhhh-------------------------hccccceeeecCCCccc------------ccCccccCCCcccEEECC
Confidence 01111111 111222 5566665532 122222233478888888
Q ss_pred eecCCCCCchhhhcCCCccEEEeeCCCCCCC
Q 014826 246 FNRGNTVFPSWMTSLTNLKSLGLSLCENCEQ 276 (418)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 276 (418)
+|.+....+..+..+++|+.|++++|++..+
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCceeecCHhHhcccccccEEEccCCccccc
Confidence 8866544444556788888888888876643
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=5.1e-18 Score=156.97 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=70.7
Q ss_pred ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH-HHHhhccccccceeeeCCCCCc-cCchhhhcCC
Q 014826 18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE-ILRNIKKLVHLRYLNLRFPKIV-KLPETLCELY 95 (418)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~ 95 (418)
++++.|+++++. +.+ ..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.++ ..+..+..++
T Consensus 70 ~~l~~L~l~~n~-----l~~-~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSF-----MDQ-PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCE-----ECS-CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCcc-----ccc-cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 566666666655 222 1111 34556666666666654443 5555566666666666666554 3445555566
Q ss_pred CCcEEeccCccCcc--cCChhhhccccccEEeccCC-ccccc-CCccccccc-ccceecceee
Q 014826 96 NLEKLDISYCFNLK--ELPEGIGKLINMKHLLNRGT-NSLRY-MPVGIGRLT-GLRTLGEFRV 153 (418)
Q Consensus 96 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~ 153 (418)
+|++|++++|...+ .++..++++++|++|++++| .+.+. ++..+..++ +|++|++.++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 66666666663222 24444556666666666666 33322 344455566 6666666554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=5.9e-18 Score=152.93 Aligned_cols=131 Identities=21% Similarity=0.070 Sum_probs=101.1
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
+++++++++++++++. ++. +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.++.++.. ..
T Consensus 6 ~~~l~~l~~l~~~~~~-----l~~--ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-----LTA--LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GT 75 (290)
T ss_dssp EECSTTCCEEECTTSC-----CSS--CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SC
T ss_pred ccccCCccEEECCCCC-----CCc--CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CC
Confidence 6778889999999887 444 33222 36889999999986655566788899999999999988877654 67
Q ss_pred CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826 94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
+++|++|++++|. +..+|..++++++|++|++++|.+....+..+..+++|++|++.+|..
T Consensus 76 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 8899999999988 567887788888999999988865554456677788888887766543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.2e-17 Score=149.60 Aligned_cols=204 Identities=21% Similarity=0.123 Sum_probs=135.2
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH 123 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (418)
+..+++|+.|+++++.+. .+ ..+..+++|++|++++|.++.++ .+..+++|++|++++|.+....+..++++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 455667777777777633 22 23667777777777777777664 5667777777777777744333344677777777
Q ss_pred EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826 124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203 (418)
Q Consensus 124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 203 (418)
|++++|.+.+..+..+..+++|++|++.+|.... ... ..+..+++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~----------------------------~~~~~l~~ 158 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-------LPK----------------------------GVFDKLTN 158 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCT----------------------------TTTTTCTT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCc-------cCH----------------------------HHhccCcc
Confidence 7777775554444556777777777776654330 000 01233456
Q ss_pred ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCC
Q 014826 204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKL 283 (418)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l 283 (418)
|+.|++++|... ......+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +.+
T Consensus 159 L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~ 221 (272)
T 3rfs_A 159 LTELDLSYNQLQ-----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTC 221 (272)
T ss_dssp CCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCT
T ss_pred CCEEECCCCCcC-----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccC
Confidence 777777766542 112234567788999999998777766667788999999999999765 446
Q ss_pred Cccchhcccccccceeccc
Q 014826 284 PSLEQLFISYMSSVKRVGD 302 (418)
Q Consensus 284 ~~L~~L~L~~~~~~~~~~~ 302 (418)
++|+.++++.|...+.+|.
T Consensus 222 ~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBC
T ss_pred cHHHHHHHHHHhCCCcccC
Confidence 7899999988875445543
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.9e-17 Score=162.78 Aligned_cols=123 Identities=22% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
-.++|..+. ++|++|++++|. ++. ++. .+++|++|++++|.+. .+|. .+++|++|++++|.++.
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N~-----l~~--lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDNN-----LTS--LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSCC-----CSC--CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred cCccChhhC--CCCcEEEecCCC-----CCC--CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence 346777666 799999999998 443 333 5789999999999854 4443 68999999999999999
Q ss_pred CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+|. .+++|+.|++++|. +..+|.. +++|++|++++|.+ ..+|. .+++|+.|++.+|...
T Consensus 116 l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCS
T ss_pred CCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCCCCC
Confidence 887 67899999999998 6667764 48999999999954 44554 3467888888776544
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.3e-17 Score=152.23 Aligned_cols=194 Identities=20% Similarity=0.186 Sum_probs=97.1
Q ss_pred CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826 47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126 (418)
Q Consensus 47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (418)
+++|++|+++++.+. .++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .++.+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 344555555555422 222 34455555555555555555544 5555555555555555 33333 3555555555555
Q ss_pred cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826 127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC 206 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 206 (418)
++|.+. .++. +..+++|++|++.++.... ... +..+++|+.
T Consensus 115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~---------~~~----------------------------l~~l~~L~~ 155 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQITN---------ISP----------------------------LAGLTNLQY 155 (308)
T ss_dssp TTSCCC-CCGG-GTTCTTCCEEECCSSCCCC---------CGG----------------------------GGGCTTCCE
T ss_pred CCCCCC-Cchh-hcCCCCCCEEECCCCccCc---------Ccc----------------------------ccCCCCccE
Confidence 555332 2222 4555555555554443220 000 112244555
Q ss_pred eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCcc
Q 014826 207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSL 286 (418)
Q Consensus 207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L 286 (418)
|++++|.... . ..+..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+.. .+..+++|
T Consensus 156 L~l~~n~l~~------------~-~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L 219 (308)
T 1h6u_A 156 LSIGNAQVSD------------L-TPLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS-PLANTSNL 219 (308)
T ss_dssp EECCSSCCCC------------C-GGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTC
T ss_pred EEccCCcCCC------------C-hhhcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc-cccCCCCC
Confidence 5555444320 1 1144556666666666644332 22 566777777777777655333 46667777
Q ss_pred chhcccccccceecc
Q 014826 287 EQLFISYMSSVKRVG 301 (418)
Q Consensus 287 ~~L~L~~~~~~~~~~ 301 (418)
+.|++++|+ +...+
T Consensus 220 ~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 220 FIVTLTNQT-ITNQP 233 (308)
T ss_dssp CEEEEEEEE-EECCC
T ss_pred CEEEccCCe-eecCC
Confidence 777777776 44333
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.2e-19 Score=168.31 Aligned_cols=246 Identities=18% Similarity=0.089 Sum_probs=176.5
Q ss_pred HHHHhccCCCccEEecCCCCCcHHH----HHhhccccccceeeeCCCCCc----cCchhh-------hcCCCCcEEeccC
Q 014826 40 VEELFRESTSLRALDVSQVSLPTEI----LRNIKKLVHLRYLNLRFPKIV----KLPETL-------CELYNLEKLDISY 104 (418)
Q Consensus 40 ~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~----~l~~~~-------~~l~~L~~L~l~~ 104 (418)
+...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+. .+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4556788999999999999876653 344778999999999998654 344433 6899999999999
Q ss_pred ccCcc----cCChhhhccccccEEeccCCccccc----CCcccccc---------cccceecceeecCCCCCCCcccccc
Q 014826 105 CFNLK----ELPEGIGKLINMKHLLNRGTNSLRY----MPVGIGRL---------TGLRTLGEFRVSAGGDVDGRKACRL 167 (418)
Q Consensus 105 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (418)
|.+.. .++..+..+++|++|++++|.+... ++..+..+ ++|++|++.+|..... ......
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~ 180 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---SMKEWA 180 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---GHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---HHHHHH
Confidence 99655 3677788999999999999976433 23334444 8999999988876410 011112
Q ss_pred ccccCCcccccccccccCCCcchhhhhhh-hcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826 168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRL-ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF 246 (418)
Q Consensus 168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (418)
..+..+++|+.+++............... .+..+++|+.|++++|.... .....++..+..+++|++|++++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-------~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-------LGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-------HHHHHHHHHHccCCCcCEEECCC
Confidence 34556667777777655322111111222 56788999999999987520 01144566788899999999999
Q ss_pred ecCCCC----Cchhhh--cCCCccEEEeeCCCCCC----CCCC-C-CCCCccchhcccccc
Q 014826 247 NRGNTV----FPSWMT--SLTNLKSLGLSLCENCE----QLPP-L-GKLPSLEQLFISYMS 295 (418)
Q Consensus 247 ~~~~~~----~~~~l~--~~~~L~~L~l~~~~~~~----~~~~-l-~~l~~L~~L~L~~~~ 295 (418)
|.+... ++.++. .+++|+.|++++|.+.. .++. + ..+++|+.|++++|+
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 977655 455553 38999999999998876 2443 3 558999999999998
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.2e-17 Score=147.81 Aligned_cols=125 Identities=25% Similarity=0.240 Sum_probs=69.7
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-hhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-LCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L 97 (418)
..++++++++. ++. +|..+ .++|++|+++++.+.+..+..+.++++|++|++++|.++.++.. +..+++|
T Consensus 17 ~~~~l~~~~~~-----l~~--ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKK-----LTA--IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSC-----CSS--CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCEEEccCCC-----CCc--cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 35566666665 333 22211 24566777766664433333566666677777766666666533 3566666
Q ss_pred cEEeccCccCcccCC-hhhhccccccEEeccCCcccccCCcccccccccceecceee
Q 014826 98 EKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRV 153 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 153 (418)
++|++++|. +..++ ..+.++++|++|++++|.+....+..+..+++|++|++.++
T Consensus 88 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 88 ETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 666666666 33333 34556666666666666444433444555555555555444
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=149.75 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=132.7
Q ss_pred CCccEEecCCCCCcHH-HHHh--hccccccceeeeCCCCCc-cCchhh--hcCCCCcEEeccCccCcccCC----hhhhc
Q 014826 48 TSLRALDVSQVSLPTE-ILRN--IKKLVHLRYLNLRFPKIV-KLPETL--CELYNLEKLDISYCFNLKELP----EGIGK 117 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~-~~~~--~~~l~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~ 117 (418)
..++.+.+.++.+... +... +..+++|++|++++|.+. ..|..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3456666666554332 1111 123455666666666654 334333 566666666666666444333 22345
Q ss_pred cccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhh
Q 014826 118 LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE 197 (418)
Q Consensus 118 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 197 (418)
+++|++|++++|.+....+..+..+++|++|++.+|...... ..........+++|+.+++..... ...+......
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l 219 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL 219 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---hhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence 666666666666554444555666666666666665532000 000011123444455544443322 2222221222
Q ss_pred cCCcccccceEeecccccCCCCCccccchhhhhhhCCC---CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCC
Q 014826 198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP---PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC 274 (418)
Q Consensus 198 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 274 (418)
+..+++|++|++++|.... ..+..+.. +++|++|++++|.+. .+|..+. ++|+.|++++|.+.
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHTCCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred HhcCCCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 3556899999999998642 11223333 479999999999766 6676553 89999999999877
Q ss_pred CCCCCCCCCCccchhcccccc
Q 014826 275 EQLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 275 ~~~~~l~~l~~L~~L~L~~~~ 295 (418)
+. |.+..+++|+.|++++|+
T Consensus 286 ~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 286 RA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC-CCTTSCCCCSCEECSSTT
T ss_pred CC-chhhhCCCccEEECcCCC
Confidence 43 557889999999999997
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=7.1e-17 Score=144.60 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=143.0
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccC
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRG 128 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 128 (418)
++..+++..+.+.+. .....+++|+.|+++++.++.++ .+..+++|++|++++|. +..++ .++.+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCC
Confidence 344556666553322 12467899999999999988876 47889999999999998 44454 689999999999999
Q ss_pred CcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceE
Q 014826 129 TNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLR 208 (418)
Q Consensus 129 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 208 (418)
|.+.+..+..+.++++|++|++.+|.... + + ...+..+++|+.|+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~-----------------~------~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQS------------L-----------------P------DGVFDKLTNLTYLN 139 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCC------------C-----------------C------TTTTTTCTTCCEEE
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCc------------c-----------------C------HHHhccCCCCCEEE
Confidence 97665556668899999999987765431 0 0 00133456788888
Q ss_pred eecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccc
Q 014826 209 LRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLE 287 (418)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~ 287 (418)
+++|... ......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+. +..+++|+
T Consensus 140 L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 140 LAHNQLQ-----------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCccC-----------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 8877642 11223456778888888888877665556667888888888888887765554 67788888
Q ss_pred hhcccccc
Q 014826 288 QLFISYMS 295 (418)
Q Consensus 288 ~L~L~~~~ 295 (418)
.|++.+|+
T Consensus 209 ~L~l~~N~ 216 (272)
T 3rfs_A 209 YIWLHDNP 216 (272)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 88888876
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1e-16 Score=143.93 Aligned_cols=205 Identities=19% Similarity=0.095 Sum_probs=149.1
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (418)
++|++|+++++.+.+..+..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+....+..++++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47999999999866555557888999999999999988776 46888999999999999855555567889999999999
Q ss_pred cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826 127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC 206 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 206 (418)
++|......+..+..+++|++|++.++.... .. ++ ..+..+++|+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~---------------------l~-------~~~~~l~~L~~ 153 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQS------FK---------------------LP-------EYFSNLTNLEH 153 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC------CC---------------------CC-------GGGGGCTTCCE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccce------ec---------------------Cc-------hhhccCCCCCE
Confidence 9986655555568888999999887765431 00 01 12344577888
Q ss_pred eEeecccccCCCCCccccchhhhhhhCCCCCCCc-EEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826 207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLK-ELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP 284 (418)
Q Consensus 207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~ 284 (418)
|++++|.... ........+..++.+. +|++++|.+... +.......+|+.|++++|.+....+. +..++
T Consensus 154 L~Ls~N~l~~--------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 154 LDLSSNKIQS--------IYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp EECCSSCCCE--------ECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred EECCCCCCCc--------CCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccc
Confidence 8888776531 1111223333444444 899999966544 33344455899999999987765444 68899
Q ss_pred ccchhcccccc
Q 014826 285 SLEQLFISYMS 295 (418)
Q Consensus 285 ~L~~L~L~~~~ 295 (418)
+|+.|++++|+
T Consensus 225 ~L~~L~l~~N~ 235 (276)
T 2z62_A 225 SLQKIWLHTNP 235 (276)
T ss_dssp SCCEEECCSSC
T ss_pred cccEEEccCCc
Confidence 99999999997
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.1e-18 Score=160.08 Aligned_cols=229 Identities=15% Similarity=0.064 Sum_probs=147.2
Q ss_pred EeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH----Hhhcccc-ccceeeeCCCCCccC-chhhhcC--
Q 014826 23 LLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL----RNIKKLV-HLRYLNLRFPKIVKL-PETLCEL-- 94 (418)
Q Consensus 23 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~l-~~~~~~l-- 94 (418)
+.++++. +++ .++.++...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.++.. +..+..+
T Consensus 3 ~~ls~n~-----~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHP-----GSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCT-----TCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccc-----chH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 4566665 554 466766777779999999998654433 6677788 899999999988754 3445543
Q ss_pred ---CCCcEEeccCccCcccCChhhh----cc-ccccEEeccCCcccccCCccc----cc-ccccceecceeecCCCCCCC
Q 014826 95 ---YNLEKLDISYCFNLKELPEGIG----KL-INMKHLLNRGTNSLRYMPVGI----GR-LTGLRTLGEFRVSAGGDVDG 161 (418)
Q Consensus 95 ---~~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~ 161 (418)
++|++|++++|.+....+..++ .+ ++|++|++++|.+....+..+ .. .++|++|++.+|....
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---- 152 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI---- 152 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG----
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH----
Confidence 8899999999985554444333 44 789999999986544433333 23 2577777776554320
Q ss_pred ccccccccccCCcccccccccccCCCcchhhhhhhhcCCcc-cccceEeecccccCCCCCccccchhhhhhhCCCC-CCC
Q 014826 162 RKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK-YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPP-LDL 239 (418)
Q Consensus 162 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L 239 (418)
.........+...+ +|++|++++|..... ....+...+..+ ++|
T Consensus 153 ---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~~L 198 (362)
T 3goz_A 153 ---------------------------KSSDELIQILAAIPANVNSLNLRGNNLASK-------NCAELAKFLASIPASV 198 (362)
T ss_dssp ---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTC
T ss_pred ---------------------------HHHHHHHHHHhcCCccccEeeecCCCCchh-------hHHHHHHHHHhCCCCC
Confidence 00111222333344 899999988875310 112233344555 588
Q ss_pred cEEEEeeecCCCCC----chhhhc-CCCccEEEeeCCCCCCCCC-----CCCCCCccchhcccccc
Q 014826 240 KELEIQFNRGNTVF----PSWMTS-LTNLKSLGLSLCENCEQLP-----PLGKLPSLEQLFISYMS 295 (418)
Q Consensus 240 ~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~ 295 (418)
++|++++|.+.+.. +..+.. .++|+.|++++|.+.+..+ .+..+++|+.|++++|.
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 99999888766543 334444 4589999998887665432 15667888888888876
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.2e-16 Score=138.79 Aligned_cols=197 Identities=23% Similarity=0.212 Sum_probs=118.4
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCChh-hhccccccEEec
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLN 126 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l 126 (418)
..+.++++++.+. .+|..+. +++++|++++|.++.++. .+..+++|++|++++|. +..++.. ++++++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 4667777777633 3443332 467777777777776653 56677777777777776 4445443 466777777777
Q ss_pred cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826 127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC 206 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 206 (418)
++|.+....+..+..+++|++|++.++.... ++ ...+..+++|+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~~------~~~~~~l~~L~~ 137 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS-----------------------------LP------PRVFDSLTKLTY 137 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-----------------------------CC------TTTTTTCTTCCE
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCe-----------------------------eC------HHHhCcCcCCCE
Confidence 7775444334455667777777665544320 00 012234567777
Q ss_pred eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCc
Q 014826 207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPS 285 (418)
Q Consensus 207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~ 285 (418)
|++++|.... .....+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++
T Consensus 138 L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 138 LSLGYNELQS-----------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred EECCCCcCCc-----------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 7777765421 1122345667777777777755554444566677777777777766543333 566677
Q ss_pred cchhcccccc
Q 014826 286 LEQLFISYMS 295 (418)
Q Consensus 286 L~~L~L~~~~ 295 (418)
|+.|++.+|+
T Consensus 207 L~~L~l~~N~ 216 (270)
T 2o6q_A 207 LKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEecCCC
Confidence 7777777765
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=143.43 Aligned_cols=205 Identities=16% Similarity=0.102 Sum_probs=113.7
Q ss_pred cccceeeeCCCCCcc--Cch--hhhcCCCCcEEeccCccCcccCChhh--hccccccEEeccCCcccccCC----ccccc
Q 014826 72 VHLRYLNLRFPKIVK--LPE--TLCELYNLEKLDISYCFNLKELPEGI--GKLINMKHLLNRGTNSLRYMP----VGIGR 141 (418)
Q Consensus 72 ~~L~~L~l~~~~l~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~~ 141 (418)
..++.|.+..+.+.. +.. .+..+++|++|++++|.+.+..|..+ +.+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346778888877651 211 13346779999999999777888777 889999999999997665444 33457
Q ss_pred ccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCc
Q 014826 142 LTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERR 221 (418)
Q Consensus 142 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 221 (418)
+++|++|++.+|... ......+..+++|+.+++.........+......+..+++|++|++++|...
T Consensus 144 ~~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------ 210 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-------AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------ 210 (310)
T ss_dssp CSCCCEEEEECCSSC-------CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC------
T ss_pred ccCCCEEEeeCCCcc-------hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC------
Confidence 899999999888764 1122334445555555444332211100000111234455555555555432
Q ss_pred cccchhhhhh-hCCCCCCCcEEEEeeecCCCCCchhhhcC---CCccEEEeeCCCCCCCCCC-CCCCCccchhcccccc
Q 014826 222 KNEDDQLLLE-ALRPPLDLKELEIQFNRGNTVFPSWMTSL---TNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMS 295 (418)
Q Consensus 222 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 295 (418)
....... .+..+++|++|++++|.+....|..+..+ ++|+.|++++|.+. .+|. + .++|+.|++++|.
T Consensus 211 ---~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 211 ---TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNR 283 (310)
T ss_dssp ---CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCC
T ss_pred ---chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEECCCCc
Confidence 1111111 12344555555555555444444434333 45555555555544 2222 2 1455555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=5.2e-16 Score=141.49 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=108.5
Q ss_pred hccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccce
Q 014826 68 IKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRT 147 (418)
Q Consensus 68 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 147 (418)
..++++|++|+++++.+..++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+. .++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCE
Confidence 345788888888888888776 47788888888888887 555665 888888888888888543 333 5667777777
Q ss_pred ecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchh
Q 014826 148 LGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQ 227 (418)
Q Consensus 148 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (418)
|++.++.... +. .+..+++|+.|++++|....
T Consensus 112 L~l~~n~l~~---------~~----------------------------~l~~l~~L~~L~l~~n~l~~----------- 143 (308)
T 1h6u_A 112 LDLTSTQITD---------VT----------------------------PLAGLSNLQVLYLDLNQITN----------- 143 (308)
T ss_dssp EECTTSCCCC---------CG----------------------------GGTTCTTCCEEECCSSCCCC-----------
T ss_pred EECCCCCCCC---------ch----------------------------hhcCCCCCCEEECCCCccCc-----------
Confidence 7776554330 00 12334566666666665421
Q ss_pred hhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826 228 LLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 295 (418)
...+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+.+ ++.+..+++|+.|++++|.
T Consensus 144 --~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 144 --ISPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp --CGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSC
T ss_pred --CccccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCc
Confidence 0114456667777777764443 222 5666677777777665543 3335566666666666665
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.8e-16 Score=136.37 Aligned_cols=215 Identities=17% Similarity=0.101 Sum_probs=120.7
Q ss_pred ceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccccCC-cccccccccceeccee
Q 014826 75 RYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFR 152 (418)
Q Consensus 75 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~ 152 (418)
+.+++.+..++.+|. + ..+|++|++++|. +..++ ..++++++|++|++++|.....++ ..+.++++|++|++.+
T Consensus 14 ~~~~v~c~~l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS-L--PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp STTEEEECSCSSCCC-C--CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred CcceeEccCccccCC-C--CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 334444444666665 2 2367777777777 33443 356677777777777774233333 3556666666666654
Q ss_pred -ecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826 153 -VSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE 231 (418)
Q Consensus 153 -~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
+... .....
T Consensus 90 ~n~l~----------------------------------------------------------------------~i~~~ 99 (239)
T 2xwt_C 90 TRNLT----------------------------------------------------------------------YIDPD 99 (239)
T ss_dssp ETTCC----------------------------------------------------------------------EECTT
T ss_pred CCCee----------------------------------------------------------------------EcCHH
Confidence 2221 00011
Q ss_pred hCCCCCCCcEEEEeeecCCCCCchhhhcCCCcc---EEEeeCC-CCCCCCCC-CCCCCccc-hhcccccccceecccccc
Q 014826 232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLK---SLGLSLC-ENCEQLPP-LGKLPSLE-QLFISYMSSVKRVGDEFL 305 (418)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~-l~~l~~L~-~L~L~~~~~~~~~~~~~~ 305 (418)
.+..+++|++|++++|.+.. +|. +..+++|+ .|++++| .+....+. +..+++|+ .|++++|. ++.++...+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~ 176 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF 176 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence 22234455555555554332 343 44555555 6666666 44332222 66677777 77777766 555554322
Q ss_pred CCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccC-CCccEEEEecCCCCCcCCccccCCCCcc
Q 014826 306 GVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIM-PHLSSLVIDSCYELKALPDHIHQTTTLK 384 (418)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 384 (418)
..++|+.|++++++.++.++.... ..+ ++|++|+++++ .++.+|.. .+++|+
T Consensus 177 -----------------~~~~L~~L~L~~n~~l~~i~~~~~-------~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~ 229 (239)
T 2xwt_C 177 -----------------NGTKLDAVYLNKNKYLTVIDKDAF-------GGVYSGPSLLDVSQT-SVTALPSK--GLEHLK 229 (239)
T ss_dssp -----------------TTCEEEEEECTTCTTCCEECTTTT-------TTCSBCCSEEECTTC-CCCCCCCT--TCTTCS
T ss_pred -----------------CCCCCCEEEcCCCCCcccCCHHHh-------hccccCCcEEECCCC-ccccCChh--HhccCc
Confidence 126777777777555666643322 256 78888888887 57777654 478888
Q ss_pred EEEeccCCc
Q 014826 385 RLWILNCGP 393 (418)
Q Consensus 385 ~L~l~~c~~ 393 (418)
.|++.++..
T Consensus 230 ~L~l~~~~~ 238 (239)
T 2xwt_C 230 ELIARNTWT 238 (239)
T ss_dssp EEECTTC--
T ss_pred eeeccCccC
Confidence 888877753
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=5.9e-16 Score=139.78 Aligned_cols=197 Identities=22% Similarity=0.162 Sum_probs=112.4
Q ss_pred ccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccccccccee
Q 014826 69 KKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL 148 (418)
Q Consensus 69 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 148 (418)
.+++++++++++++.++.+|..+. ++++.|++++|.+....+..++++++|++|++++|.+. .++.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEE
Confidence 344555555555555555554332 45555555555533333344555555566655555332 22221 445555555
Q ss_pred cceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhh
Q 014826 149 GEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQL 228 (418)
Q Consensus 149 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 228 (418)
++.++... .+ +. .+..+++|+.|++++|.+.. .
T Consensus 83 ~Ls~N~l~------------~l-----------------~~-------~~~~l~~L~~L~l~~N~l~~-----------l 115 (290)
T 1p9a_G 83 DLSHNQLQ------------SL-----------------PL-------LGQTLPALTVLDVSFNRLTS-----------L 115 (290)
T ss_dssp ECCSSCCS------------SC-----------------CC-------CTTTCTTCCEEECCSSCCCC-----------C
T ss_pred ECCCCcCC------------cC-----------------ch-------hhccCCCCCEEECCCCcCcc-----------c
Confidence 55443321 00 00 11223455555555554321 1
Q ss_pred hhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCC
Q 014826 229 LLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGV 307 (418)
Q Consensus 229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 307 (418)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|. ++.++...
T Consensus 116 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~--- 191 (290)
T 1p9a_G 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGF--- 191 (290)
T ss_dssp CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---
T ss_pred CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhh---
Confidence 123456678888899988877655555667888899999988877754433 5778888888888887 66665543
Q ss_pred CCCccCCCCCccccccCCccccccccc
Q 014826 308 ESDRHDSSSSSLVIIAFPKLKSLRIEG 334 (418)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~L~~L~l~~ 334 (418)
...++|+.+++.+
T Consensus 192 --------------~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 192 --------------FGSHLLPFAFLHG 204 (290)
T ss_dssp --------------TTTCCCSEEECCS
T ss_pred --------------cccccCCeEEeCC
Confidence 2456788887775
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=6.1e-17 Score=142.14 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=91.4
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCC-CccCch-hhhcCCCCcEEeccC-ccCcccCC-hhhhccccccEE
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVKLPE-TLCELYNLEKLDISY-CFNLKELP-EGIGKLINMKHL 124 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~-~~l~~l~~L~~L 124 (418)
+|++|+++++.+.+..+..+.++++|++|++++|. ++.++. .+.++++|++|++++ +. +..++ ..++++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 45555555555333222344555555555555554 554442 445555555555555 33 33333 334555555555
Q ss_pred eccCCcccccCCcccccccccc---eecceee-cCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCC
Q 014826 125 LNRGTNSLRYMPVGIGRLTGLR---TLGEFRV-SAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDK 200 (418)
Q Consensus 125 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~ 200 (418)
++++|.+. .+|. +..+++|+ .|++.++ ... ..... .+..
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~-------~i~~~----------------------------~~~~ 153 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT-------SIPVN----------------------------AFQG 153 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC-------EECTT----------------------------TTTT
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchh-------hcCcc----------------------------cccc
Confidence 55555332 2443 44455554 5554443 211 00000 1122
Q ss_pred ccccc-ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeec-CCCCCchhhhcC-CCccEEEeeCCCCCCCC
Q 014826 201 KKYLS-CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNR-GNTVFPSWMTSL-TNLKSLGLSLCENCEQL 277 (418)
Q Consensus 201 ~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~ 277 (418)
+++|+ .+++++|... .++......++|++|++++|. +....+..+..+ ++|+.|++++|.+.. +
T Consensus 154 l~~L~~~L~l~~n~l~------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp TBSSEEEEECCSCCCC------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred hhcceeEEEcCCCCCc------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 33444 4444444321 111111112456666666663 443334455566 777777777776553 3
Q ss_pred CCCCCCCccchhcccccc
Q 014826 278 PPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 278 ~~l~~l~~L~~L~L~~~~ 295 (418)
|.. .+++|+.|++.++.
T Consensus 221 ~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 221 PSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCT-TCTTCSEEECTTC-
T ss_pred Chh-HhccCceeeccCcc
Confidence 322 46666666666543
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=4.1e-17 Score=152.39 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=163.5
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCC-CccEEecCCCCCcHHHHHhhccc-----cccceeeeCCCC
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFREST-SLRALDVSQVSLPTEILRNIKKL-----VHLRYLNLRFPK 83 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~ 83 (418)
+|..+...++|++|+|++|. +.......+...+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 45545555669999999998 22222233446788898 99999999998765545455444 999999999999
Q ss_pred CccCc-hh----hhcC-CCCcEEeccCccCcccCChhhh----c-cccccEEeccCCccccc----CCccccccc-ccce
Q 014826 84 IVKLP-ET----LCEL-YNLEKLDISYCFNLKELPEGIG----K-LINMKHLLNRGTNSLRY----MPVGIGRLT-GLRT 147 (418)
Q Consensus 84 l~~l~-~~----~~~l-~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~~~----~~~~l~~l~-~L~~ 147 (418)
++..+ .. +..+ ++|++|++++|.+....+..++ . ..+|++|++++|.+... ++..+..++ +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 88544 32 4455 8999999999995444443333 3 36999999999966543 334445555 8888
Q ss_pred ecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCc-ccccceEeecccccCCCCCccccch
Q 014826 148 LGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKK-KYLSCLRLRFDKKKEGGERRKNEDD 226 (418)
Q Consensus 148 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (418)
|++.+|.... . ....+...+..+ ++|+.|++++|.... ...
T Consensus 172 L~Ls~n~l~~-------~------------------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~ 213 (362)
T 3goz_A 172 LNLRGNNLAS-------K------------------------NCAELAKFLASIPASVTSLDLSANLLGL-------KSY 213 (362)
T ss_dssp EECTTSCGGG-------S------------------------CHHHHHHHHHTSCTTCCEEECTTSCGGG-------SCH
T ss_pred eeecCCCCch-------h------------------------hHHHHHHHHHhCCCCCCEEECCCCCCCh-------hHH
Confidence 8887765431 0 001112223334 478888888886531 011
Q ss_pred hhhhhhCCC-CCCCcEEEEeeecCCCCCchh----hhcCCCccEEEeeCCCCCCCC--------CCCCCCCccchhcccc
Q 014826 227 QLLLEALRP-PLDLKELEIQFNRGNTVFPSW----MTSLTNLKSLGLSLCENCEQL--------PPLGKLPSLEQLFISY 293 (418)
Q Consensus 227 ~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~--------~~l~~l~~L~~L~L~~ 293 (418)
..+...+.. .++|++|++++|.+.+..+.. +..+++|+.|++++|.+...- ..+..+++|+.|++++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 224444443 468999999988776654433 346788999999988633221 1266788899999998
Q ss_pred cc
Q 014826 294 MS 295 (418)
Q Consensus 294 ~~ 295 (418)
|.
T Consensus 294 N~ 295 (362)
T 3goz_A 294 KE 295 (362)
T ss_dssp CB
T ss_pred Cc
Confidence 87
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=3e-15 Score=132.29 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=25.7
Q ss_pred CCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC
Q 014826 233 LRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE 275 (418)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 275 (418)
+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 3445666666666665554444455666677777777766543
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=3e-15 Score=135.28 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=45.0
Q ss_pred CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826 47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126 (418)
Q Consensus 47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (418)
+++|++|+++++.+.+ ++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++. ++.+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 4445555555554221 11 24445555555555555554443 4455555555555554 222332 445555555555
Q ss_pred cCCcccccCCcccccccccceeccee
Q 014826 127 RGTNSLRYMPVGIGRLTGLRTLGEFR 152 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~l~~L~~L~l~~ 152 (418)
++|.+.. + ..+..+++|+.|++.+
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGN 143 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCS
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccC
Confidence 5553222 1 2334444444444433
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=7.9e-15 Score=129.58 Aligned_cols=176 Identities=19% Similarity=0.090 Sum_probs=117.0
Q ss_pred cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecce
Q 014826 72 VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 151 (418)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 151 (418)
...++++++++.++.+|..+. ++++.|++++|.+....+..++++++|++|++++|.+.+..+..+..+++|++|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345666777666666665443 467777777776444444456667777777777775555455556666777777665
Q ss_pred eecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE 231 (418)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
++.... ... ..+..+++|+.|++++|.+. .....
T Consensus 92 ~n~l~~-------~~~----------------------------~~~~~l~~L~~L~L~~N~l~-----------~~~~~ 125 (251)
T 3m19_A 92 NNQLAS-------LPL----------------------------GVFDHLTQLDKLYLGGNQLK-----------SLPSG 125 (251)
T ss_dssp TSCCCC-------CCT----------------------------TTTTTCTTCCEEECCSSCCC-----------CCCTT
T ss_pred CCcccc-------cCh----------------------------hHhcccCCCCEEEcCCCcCC-----------CcChh
Confidence 554320 000 01223456666777666542 11123
Q ss_pred hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccc
Q 014826 232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMS 295 (418)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 295 (418)
.+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++.+|+
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 356688999999999977666666788999999999999988866553 8889999999999997
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4.2e-15 Score=138.05 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCCh-hhhccccccEEecc-CCcccccCCcccccccccceec
Q 014826 73 HLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNR-GTNSLRYMPVGIGRLTGLRTLG 149 (418)
Q Consensus 73 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~-~~~~~~~~~~~l~~l~~L~~L~ 149 (418)
++++|++++|.++.+|. .|.++++|++|++++|.+.+.++. .+.++++++++... .|.+....|..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 45555555555555553 345555555555555554444432 34455555443332 2322222344455555666665
Q ss_pred ceeecC
Q 014826 150 EFRVSA 155 (418)
Q Consensus 150 l~~~~~ 155 (418)
+.++..
T Consensus 111 l~~n~l 116 (350)
T 4ay9_X 111 ISNTGI 116 (350)
T ss_dssp EEEECC
T ss_pred cccccc
Confidence 555543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.5e-14 Score=130.67 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=104.8
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 92 (418)
.++.+++|++|++++|. +++ ++. +..+++|++|++++|.+.+. +. +.++++|++|++++|.++.++. +.
T Consensus 41 ~~~~l~~L~~L~l~~~~-----i~~--~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSD-----IKS--VQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp CHHHHHTCCEEECTTSC-----CCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred chhhcCcccEEEccCCC-----ccc--Chh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hc
Confidence 35689999999999998 444 333 88899999999999986543 33 8899999999999999998765 88
Q ss_pred cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
.+++|++|++++|. +..++ .++.+++|++|++++|.+.. + ..+..+++|++|++.+|...
T Consensus 110 ~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 110 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccc
Confidence 99999999999998 55554 58899999999999995543 3 56777888888877666543
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.3e-14 Score=143.66 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=102.8
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH 123 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (418)
+..+.+|+.|+++++.+. .++ .+..+++|++|++++|.+..++. +..+++|+.|++++|. +..++ .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 345566666677666532 222 35666677777777776666654 6666777777777666 33344 4666667777
Q ss_pred EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826 124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203 (418)
Q Consensus 124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 203 (418)
|++++|.+.. + ..+..+++|+.|++.+|.... + ..+..+++
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~---------l----------------------------~~l~~l~~ 154 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD---------I----------------------------TVLSRLTK 154 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC---------C----------------------------GGGGSCTT
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCC---------c----------------------------hhhcccCC
Confidence 7776664332 2 335566666666665544320 0 02334466
Q ss_pred ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC
Q 014826 204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE 275 (418)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 275 (418)
|+.|++++|.+.. ... +..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+..
T Consensus 155 L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 155 LDTLSLEDNQISD------------IVP-LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCEEECcCCcCCC------------chh-hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 7777777665421 111 5667778888887775543 3 346677788888887776554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=7.9e-14 Score=129.45 Aligned_cols=235 Identities=17% Similarity=0.133 Sum_probs=130.2
Q ss_pred ceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccccCCc-ccccccccceeccee
Q 014826 75 RYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFR 152 (418)
Q Consensus 75 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~ 152 (418)
++++.+++.++++|..+ .+++++|++++|+ ++.+|. .++++++|++|++++|.+.+.++. .+.+++++..+....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888899999765 4689999999998 667775 589999999999999976666664 567888877654433
Q ss_pred -ecCCCCCCCccccccccccCCcccccccccccC--CCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826 153 -VSAGGDVDGRKACRLESLKNLEHLQVCGIRRLG--DVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL 229 (418)
Q Consensus 153 -~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 229 (418)
+... ......+..+++|+.+++.... .++.. .......+..+++..+... ....
T Consensus 89 ~N~l~-------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------~~~~~~~l~~l~l~~~~~i----------~~l~ 145 (350)
T 4ay9_X 89 ANNLL-------YINPEAFQNLPNLQYLLISNTGIKHLPDV------HKIHSLQKVLLDIQDNINI----------HTIE 145 (350)
T ss_dssp ETTCC-------EECTTSBCCCTTCCEEEEEEECCSSCCCC------TTCCBSSCEEEEEESCTTC----------CEEC
T ss_pred CCccc-------ccCchhhhhccccccccccccccccCCch------hhcccchhhhhhhcccccc----------cccc
Confidence 3322 1122334455555554443322 11110 1112233444444332210 0000
Q ss_pred hhhCCC-CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC--CCCCCccchhcccccccceeccccccC
Q 014826 230 LEALRP-PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLG 306 (418)
Q Consensus 230 ~~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~ 306 (418)
...+.. ...++.|++++|.+. .++.......+|+.+.+.++...+.+|. +..+++|+.|++++|. ++.++..
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--- 220 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--- 220 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS---
T ss_pred ccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh---
Confidence 111222 234566666666433 3333333445666666665544445543 5566666666666665 5444422
Q ss_pred CCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEe
Q 014826 307 VESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVID 365 (418)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~ 365 (418)
.+.+|+.|.+.++.+++.++. .. .+++|+.+++.
T Consensus 221 ----------------~~~~L~~L~~l~~~~l~~lP~-l~--------~l~~L~~l~l~ 254 (350)
T 4ay9_X 221 ----------------GLENLKKLRARSTYNLKKLPT-LE--------KLVALMEASLT 254 (350)
T ss_dssp ----------------SCTTCCEEECTTCTTCCCCCC-TT--------TCCSCCEEECS
T ss_pred ----------------hhccchHhhhccCCCcCcCCC-ch--------hCcChhhCcCC
Confidence 345555555555555555552 11 45666666654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=1.1e-14 Score=123.74 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=101.7
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-Cchhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPETL 91 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~ 91 (418)
....+++|++|+++++. +++ ++ .+..+++|++|++++|.+. .+ ..+..+++|++|++++|.++. .+..+
T Consensus 39 ~~~~l~~L~~L~l~~n~-----i~~--l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 39 TEAQMNSLTYITLANIN-----VTD--LT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp BHHHHHTCCEEEEESSC-----CSC--CT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred ChhhcCCccEEeccCCC-----ccC--hH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhh
Confidence 44678889999998887 443 34 3788888999999888632 32 357788889999998888774 56677
Q ss_pred hcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 92 CELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
..+++|++|++++|.+....+..++.+++|++|++++|.....++ .+..+++|++|++.+|...
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 888889999998888666677778888889999998886455665 5778888888888766543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=1.8e-14 Score=122.26 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=115.9
Q ss_pred CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
-.++| .+..+++|++|++++|. ++. ++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 56 i~~l~-~l~~l~~L~~L~l~~n~-----~~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 56 VTDLT-GIEYAHNIKDLTINNIH-----ATN--YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CSCCT-TGGGCTTCSEEEEESCC-----CSC--CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred ccChH-HHhcCCCCCEEEccCCC-----CCc--ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 34577 68999999999999997 443 33 38899999999999999877777789999999999999999884
Q ss_pred -CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 87 -LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 87 -l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
.+..+..+++|++|++++|..++.++ .++.+++|++|++++|.+. .++ .+..+++|++|++.++...
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC---
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccC
Confidence 66789999999999999998677777 5999999999999999554 444 7889999999999887654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.4e-14 Score=125.22 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=111.3
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. ++|++|++++|. ++. +.+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.++.+
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~-----i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNT-----IKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSC-----CCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CcCCCccC--cCCCEEECCCCc-----CCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 45666555 589999999987 444 2234578889999999999987666677888899999999999998888
Q ss_pred chh-hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 88 PET-LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++.+|.+.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 754 678999999999999855555677888999999999999666555566888889999988877654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=3.7e-14 Score=140.37 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=137.8
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 92 (418)
.+..+++|+.|++++|. +.. ++. +..+++|+.|+|++|.+.+..+ +..+++|++|++++|.+..++ .+.
T Consensus 38 ~~~~L~~L~~L~l~~n~-----i~~--l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~ 106 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSD-----IKS--VQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLK 106 (605)
T ss_dssp CHHHHTTCCCCBCTTCC-----CCC--CTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TST
T ss_pred chhcCCCCCEEECcCCC-----CCC--ChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhc
Confidence 35689999999999998 444 333 8899999999999998654333 889999999999999999886 688
Q ss_pred cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826 93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN 172 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 172 (418)
.+++|+.|++++|. +..++ .+..+++|+.|++++|.+.. + ..+..+++|+.|++.+|.... . .
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~------~---~---- 169 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD------I---V---- 169 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC------C---G----
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC------c---h----
Confidence 99999999999998 44554 58999999999999996544 3 668899999999987776441 0 0
Q ss_pred CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC
Q 014826 173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV 252 (418)
Q Consensus 173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (418)
.+..+++|+.|++++|.+.. ...+..+++|+.|++++|.+...
T Consensus 170 ------------------------~l~~l~~L~~L~Ls~N~i~~-------------l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 ------------------------PLAGLTKLQNLYLSKNHISD-------------LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ------------------------GGTTCTTCCEEECCSSCCCB-------------CGGGTTCTTCSEEECCSEEEECC
T ss_pred ------------------------hhccCCCCCEEECcCCCCCC-------------ChHHccCCCCCEEEccCCcCcCC
Confidence 02345788888888887531 13577789999999999976544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.8e-14 Score=124.12 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=94.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. ++|++|+|++|. ++. ..+..|..+++|++|++++|.+....+..+..+++|++|++++|.++.+
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQ-----ITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSC-----CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCCCCC--CCCCEEEcCCCc-----cCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 44665444 677888888776 333 2244467777888888887775433334467777888888888777766
Q ss_pred ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+. .+..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.|++.+|...
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 53 35677788888888777 4577777777788888888777554433445667777777777666544
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2e-14 Score=127.72 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826 233 LRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 295 (418)
+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|+
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 45566677777776654432 2 466777777777777766654 557777777788777776
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=4.9e-14 Score=120.71 Aligned_cols=141 Identities=22% Similarity=0.183 Sum_probs=107.0
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+ .++|++|++++|. ++. ..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~-----l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNS-----LKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSC-----CCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCCCC--CCCCcEEEcCCCc-----cCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence 3456544 3589999999998 443 2344578899999999999986644444578899999999999998877
Q ss_pred ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+. .+..+++|++|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|++.+|...
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 74 4678999999999999844333445788999999999998665544555788999999998877544
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.4e-15 Score=149.61 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=78.9
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-------------CcHHHHHhhccccccceee-eC
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-------------LPTEILRNIKKLVHLRYLN-LR 80 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~ 80 (418)
..+++|+.|+|++|. ++. +|..+.++++|+.|+++++. ..+..|..++.+++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~-----L~~--Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-----STV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH-----HHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhh-----HHh--hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 456777788888876 654 67777888888888876653 2334555566677777776 45
Q ss_pred CCCCccCch------hhhc--CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceeccee
Q 014826 81 FPKIVKLPE------TLCE--LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFR 152 (418)
Q Consensus 81 ~~~l~~l~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 152 (418)
.+.+..++. .+.. ...|+.|++++|. +..+|. ++.+++|+.|++++|.+. .+|..++.+++|++|++.+
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 443332221 1111 1246677777766 444665 666777777777766433 5666666666666666654
Q ss_pred ec
Q 014826 153 VS 154 (418)
Q Consensus 153 ~~ 154 (418)
|.
T Consensus 496 N~ 497 (567)
T 1dce_A 496 NA 497 (567)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=3.8e-14 Score=121.43 Aligned_cols=107 Identities=23% Similarity=0.198 Sum_probs=71.3
Q ss_pred CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCC-hhhhccccccEE
Q 014826 47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHL 124 (418)
Q Consensus 47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L 124 (418)
.++|++|+++++.+.+..+..+.++++|++|++++|.++.++. .+..+++|++|++++|.+. .++ ..++.+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 4578888888877554334446777888888888877776664 3567778888888877733 443 346777778888
Q ss_pred eccCCcccccCCcccccccccceecceeec
Q 014826 125 LNRGTNSLRYMPVGIGRLTGLRTLGEFRVS 154 (418)
Q Consensus 125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 154 (418)
++++|.+....+..+..+++|++|++.++.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 887775544334445667777777665554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=5.4e-14 Score=121.49 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=98.3
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
..+|..+.. .+++|+|++|. ++.......|..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus 24 ~~iP~~~~~--~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 24 NKIPEHIPQ--YTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp SSCCSCCCT--TCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCccCCCC--CCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence 346655533 45788888877 44300123367778888888888875554445677788888888888887766
Q ss_pred c-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 88 P-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 88 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+ ..+..+++|++|++++|.+....|..+.++++|++|++++|.+.+..|..+..+++|+.|++.+|...
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5 34677888888888888755555666777888888888887666656777777888888877776654
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=7.7e-14 Score=115.16 Aligned_cols=132 Identities=25% Similarity=0.212 Sum_probs=92.3
Q ss_pred cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-CchhhhcCC
Q 014826 17 VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPETLCELY 95 (418)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~ 95 (418)
.++|++|++++|. +++..++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.. +|..+..++
T Consensus 23 ~~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3678888888876 44112455567778888888888875443 567778888888888888776 666666788
Q ss_pred CCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCC---cccccccccceecceeecCC
Q 014826 96 NLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMP---VGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 96 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~ 156 (418)
+|++|++++|. +..++ ..++.+++|++|++++|.+....+ ..+..+++|++|++..+...
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888888887 44444 567778888888888885443322 26777888888887776543
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=6.6e-14 Score=113.13 Aligned_cols=128 Identities=25% Similarity=0.215 Sum_probs=98.9
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-CchhhhcC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPETLCEL 94 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l 94 (418)
..++|++|++++|. +++..++..+..+++|++|++++|.+.+. ..+.++++|++|++++|.++. +|..+..+
T Consensus 15 ~~~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 44789999999987 44112555578889999999999986544 567888999999999999886 77777789
Q ss_pred CCCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCC---cccccccccceecce
Q 014826 95 YNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMP---VGIGRLTGLRTLGEF 151 (418)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 151 (418)
++|++|++++|. +..++ ..++.+++|++|++++|.+.+..+ ..+..+++|+.|++.
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999998 44443 678889999999999985544433 367788888888764
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.4e-13 Score=113.09 Aligned_cols=132 Identities=19% Similarity=0.135 Sum_probs=107.3
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-h
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-L 91 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~ 91 (418)
.+.++++|++|++++|. ++. ++.+....++|++|++++|.+.+. ..+..+++|++|++++|.++.+|.. +
T Consensus 14 ~~~~~~~L~~L~l~~n~-----l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-----IPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSC-----CCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCC-----Cch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh
Confidence 57789999999999998 443 344333344999999999986553 5788999999999999999988744 4
Q ss_pred hcCCCCcEEeccCccCcccCCh--hhhccccccEEeccCCcccccCCcc----cccccccceecceeecC
Q 014826 92 CELYNLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~ 155 (418)
..+++|++|++++|. ++.+|. .++.+++|++|++++|.+. .+|.. +..+++|+.|++..+..
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 899999999999998 577776 7889999999999999554 55654 78899999999877653
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=4.1e-13 Score=131.57 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=59.7
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
.+|++|+++++.+.+ +|..+ .++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 467777777776443 44433 366777777777777776 346777777777776 333665 443 77777777
Q ss_pred CCcccccCCcccccccccceecceeecCC
Q 014826 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+|.+.+ +|. .+++|+.|++.+|...
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC
Confidence 774433 555 4667777776665543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.2e-12 Score=128.27 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=112.3
Q ss_pred cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecce
Q 014826 72 VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 151 (418)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 151 (418)
.++++|++++|.++.+|..+ .++|++|++++|. +..+| ..+++|++|++++|.+.+ +|. +.+ +|++|++.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 38999999999999898755 4889999999998 55788 557999999999996554 777 654 89999988
Q ss_pred eecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE 231 (418)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
+|.... +.. . +++|+.|++++|.+.. ++.
T Consensus 129 ~N~l~~---------lp~--~----------------------------l~~L~~L~Ls~N~l~~------------lp~ 157 (571)
T 3cvr_A 129 NNQLTM---------LPE--L----------------------------PALLEYINADNNQLTM------------LPE 157 (571)
T ss_dssp SSCCSC---------CCC--C----------------------------CTTCCEEECCSSCCSC------------CCC
T ss_pred CCcCCC---------CCC--c----------------------------CccccEEeCCCCccCc------------CCC
Confidence 776541 000 1 2455666666555321 111
Q ss_pred hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCcc-------chhcccccccceeccccc
Q 014826 232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSL-------EQLFISYMSSVKRVGDEF 304 (418)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~~ 304 (418)
.+++|++|++++|.+.. +|. +. ++|+.|++++|.+. .+|.+.. +| +.|++++|. ++.+|..
T Consensus 158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~- 225 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAVPV--RNHHSEETEIFFRCRENR-ITHIPEN- 225 (571)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCCC----------CCEEEECCSSC-CCCCCGG-
T ss_pred ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhHHH--hhhcccccceEEecCCCc-ceecCHH-
Confidence 34566666666665443 444 33 66777777776555 3333322 45 667776665 5545443
Q ss_pred cCCCCCccCCCCCccccccCCcccccccccc
Q 014826 305 LGVESDRHDSSSSSLVIIAFPKLKSLRIEGL 335 (418)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 335 (418)
+..+++|+.|+++++
T Consensus 226 ----------------l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 226 ----------------ILSLDPTCTIILEDN 240 (571)
T ss_dssp ----------------GGGSCTTEEEECCSS
T ss_pred ----------------HhcCCCCCEEEeeCC
Confidence 234666666666663
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=3.2e-13 Score=111.43 Aligned_cols=120 Identities=22% Similarity=0.198 Sum_probs=101.4
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
+.+|..+..+++|++|++++|. ++. + ..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.++.+
T Consensus 39 ~~i~~~~~~l~~L~~L~l~~n~-----l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 39 GKIEGLTAEFVNLEFLSLINVG-----LIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110 (168)
T ss_dssp TBCSSCCGGGGGCCEEEEESSC-----CCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS
T ss_pred hhHHHHHHhCCCCCEEeCcCCC-----CCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc
Confidence 4689889999999999999998 444 2 4588999999999999997665777778899999999999999987
Q ss_pred c--hhhhcCCCCcEEeccCccCcccCCh----hhhccccccEEeccCCcccccCCc
Q 014826 88 P--ETLCELYNLEKLDISYCFNLKELPE----GIGKLINMKHLLNRGTNSLRYMPV 137 (418)
Q Consensus 88 ~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~ 137 (418)
+ ..+..+++|++|++++|. +..++. .+..+++|++|++++|. ...+|.
T Consensus 111 ~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 111 STLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp GGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred hhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 6 678899999999999998 555554 78899999999999984 344443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=4.6e-13 Score=118.97 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=61.3
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
+.++++|++|++++|. +++ ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.++.+|....
T Consensus 37 ~~~l~~L~~L~l~~n~-----i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-----IQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC-----CCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred hhhcCcCcEEECcCCC-----ccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcccc-
Confidence 4455555555555554 222 22 24555555555555555332 222 5555555555555555555443222
Q ss_pred CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeec
Q 014826 94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVS 154 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 154 (418)
++|++|++++|. +..++ .++.+++|++|++++|.+. .++ .+..+++|+.|++.+|.
T Consensus 106 -~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp -SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTSC
T ss_pred -CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCCc
Confidence 555555555555 33333 3555555555555555332 222 34455555555554443
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=2.9e-12 Score=110.55 Aligned_cols=78 Identities=10% Similarity=0.111 Sum_probs=48.5
Q ss_pred ceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeec
Q 014826 75 RYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVS 154 (418)
Q Consensus 75 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 154 (418)
+.++.+++.++.+|..+. ++|+.|++++|.+....+..+..+++|++|++++|.+....|..+..+++|++|++.+|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666665432 567777777776333233356667777777777775555456666666666666665544
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=1.4e-12 Score=119.85 Aligned_cols=299 Identities=15% Similarity=0.137 Sum_probs=165.5
Q ss_pred ccCCCCCccccc--cceeeEEeecCCCCCCCCccHHHHHHHhcc-CCCccEEecCCCCCcH-HHHHhhccccccceeeeC
Q 014826 5 SKGASLPVSTRR--VKRMRTLLISASGSDHSSLNAEIVEELFRE-STSLRALDVSQVSLPT-EILRNIKKLVHLRYLNLR 80 (418)
Q Consensus 5 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 80 (418)
...|.++..+.. ..++++|.++++- ....+.. +.. +++|++|+|+++.+.. ... -+.++.++.+...
T Consensus 10 ~~~g~l~~~l~~~~~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~ 80 (329)
T 3sb4_A 10 SKPGTLISMMTEEEANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYM 80 (329)
T ss_dssp SSTTCGGGGSCHHHHHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEEC
T ss_pred CCCCcHHhhccchhhCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcceeEEecCc--ccccccccccccc
Confidence 345666666664 7889999998853 3323444 344 8889999999887440 000 1122223444444
Q ss_pred CCCCccCc-hhhhc--------CCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccccCCcccccccccceecc
Q 014826 81 FPKIVKLP-ETLCE--------LYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGE 150 (418)
Q Consensus 81 ~~~l~~l~-~~~~~--------l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 150 (418)
.+. +| ..|.+ +++|+.+++.. . +..++ .++.+|++|+.+++.++......+..|..+.++..+..
T Consensus 81 ~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 81 ANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TTE---ECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred ccc---cCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 442 33 34555 88899998888 4 55554 45888889999998888554444455666655555543
Q ss_pred eeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc-ceEeecccccCCCCCccccchhhh
Q 014826 151 FRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS-CLRLRFDKKKEGGERRKNEDDQLL 229 (418)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~ 229 (418)
...... .....+. ...+..|..|+ .+.+..... .....
T Consensus 156 ~~~~~~--------------~~~~~i~-----------------~~~f~~~~~L~~~i~~~~~~~----------l~~~~ 194 (329)
T 3sb4_A 156 GSSDAY--------------RFKNRWE-----------------HFAFIEGEPLETTIQVGAMGK----------LEDEI 194 (329)
T ss_dssp TCTHHH--------------HTSTTTT-----------------TSCEEESCCCEEEEEECTTCC----------HHHHH
T ss_pred cchhhh--------------hcccccc-----------------ccccccccccceeEEecCCCc----------HHHHH
Confidence 221000 0000000 00111223333 222211110 11222
Q ss_pred hhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCC
Q 014826 230 LEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGV 307 (418)
Q Consensus 230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 307 (418)
...-..+.++..+.+.+. +.......+. .+++|+.+++.+|.....-.. +..|++|+.|++..+ ++.++...|
T Consensus 195 ~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF-- 269 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF-- 269 (329)
T ss_dssp HHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT--
T ss_pred hhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHh--
Confidence 222233456666666655 2222122222 477888888887754432222 777888888888775 666766543
Q ss_pred CCCccCCCCCccccccCCccc-ccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccE
Q 014826 308 ESDRHDSSSSSLVIIAFPKLK-SLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKR 385 (418)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~ 385 (418)
..+++|+ .+.+.+ +++.+.... ...|++|+++++.++ .++.++. .+..+++|+.
T Consensus 270 --------------~~~~~L~~~l~l~~--~l~~I~~~a-------F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 270 --------------SNCGRLAGTLELPA--SVTAIEFGA-------FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKL 325 (329)
T ss_dssp --------------TTCTTCCEEEEECT--TCCEECTTT-------TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCE
T ss_pred --------------hCChhccEEEEEcc--cceEEchhh-------hhCCccCCEEEeCCC-ccCccchhhhcCCcchhh
Confidence 3567777 777765 555554222 247888888888766 6777764 6777888887
Q ss_pred EE
Q 014826 386 LW 387 (418)
Q Consensus 386 L~ 387 (418)
|.
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 75
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=8e-13 Score=123.18 Aligned_cols=126 Identities=18% Similarity=0.083 Sum_probs=79.9
Q ss_pred eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhc-cccccceeeeCCCCCccCc-hhhhcCCCCc
Q 014826 21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIK-KLVHLRYLNLRFPKIVKLP-ETLCELYNLE 98 (418)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~ 98 (418)
++++++++. ++. +|..+ ...+++|+|++|.+.+..+..+. ++++|++|++++|.+..++ ..+..+++|+
T Consensus 21 ~~l~c~~~~-----l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQ-----LPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSC-----CSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCC-----cCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 567777765 443 33211 24577777777775544444455 6777777777777777665 4567777777
Q ss_pred EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826 99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
+|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++.+|..
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 777777773333333567777777777777755555556666677777776655543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=6.6e-13 Score=107.15 Aligned_cols=112 Identities=24% Similarity=0.243 Sum_probs=96.3
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
+.+|..+..+++|++|++++|. +++ + ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.++.+
T Consensus 32 ~~~~~~~~~l~~L~~L~l~~n~-----l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 32 GKLEGLTDEFEELEFLSTINVG-----LTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp TBCCSCCTTCTTCCEEECTTSC-----CCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred hHHHHHHhhcCCCcEEECcCCC-----CCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 4688889999999999999998 444 2 4588999999999999997766888888899999999999999986
Q ss_pred c--hhhhcCCCCcEEeccCccCcccCCh----hhhccccccEEeccC
Q 014826 88 P--ETLCELYNLEKLDISYCFNLKELPE----GIGKLINMKHLLNRG 128 (418)
Q Consensus 88 ~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~ 128 (418)
+ ..+..+++|++|++++|. +...+. .++.+++|++|++++
T Consensus 104 ~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 104 STIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 5 778999999999999998 444544 688999999998863
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=1.6e-12 Score=112.89 Aligned_cols=127 Identities=22% Similarity=0.207 Sum_probs=103.7
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L 97 (418)
+-+.++.+++. ++. +|. .-.++|++|++++|.+.+..+..+.++++|++|++++|.++.+| ..+..+++|
T Consensus 20 s~~~v~c~~~~-----l~~--ip~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 20 SGTTVDCRSKR-----HAS--VPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp ETTEEECTTSC-----CSS--CCS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred eCCEeEccCCC-----cCc--cCC--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 35678888876 443 332 22489999999999977666777899999999999999999887 456899999
Q ss_pred cEEeccCccCcccCC-hhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 98 EKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
++|++++|. +..++ ..+..+++|++|++++|.+ ..+|..+..+++|++|++.+|...
T Consensus 91 ~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 91 TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSCCC
T ss_pred CEEECCCCc-CCccChhHhCcchhhCeEeccCCcc-cccCcccccCCCCCEEECCCCcCC
Confidence 999999998 44554 4578999999999999954 588989999999999999887654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=3.2e-12 Score=117.52 Aligned_cols=267 Identities=11% Similarity=0.067 Sum_probs=154.3
Q ss_pred CCCccEEecCCCCCcHHHHHhhcc-ccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCC-hhhhc-------
Q 014826 47 STSLRALDVSQVSLPTEILRNIKK-LVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELP-EGIGK------- 117 (418)
Q Consensus 47 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~------- 117 (418)
+.+++.|.++++--..++ ..+.. +++|++|++++|.+..+...-..++.++.+.+..+. +| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc----cCHHHhccccccccc
Confidence 446888888876312233 23444 788999999998877221111122223444444432 22 23556
Q ss_pred -cccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhh
Q 014826 118 -LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL 196 (418)
Q Consensus 118 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~ 196 (418)
|++|++|.+.+ .....-...|..|++|+.+++..+.... -....+.++
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-------i~~~aF~~~----------------------- 147 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-------LLPEALADS----------------------- 147 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-------ECTTSSCTT-----------------------
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-------cchhhhcCC-----------------------
Confidence 89999999988 3544444568889999998887654320 011112222
Q ss_pred hcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCc-EEEEeeecCCCCCchhhh----cCCCccEEEeeCC
Q 014826 197 ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLK-ELEIQFNRGNTVFPSWMT----SLTNLKSLGLSLC 271 (418)
Q Consensus 197 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~ 271 (418)
.++..+........ ..........+..+..|+ .+.+... ..++..+. ...+++.+.+.+.
T Consensus 148 -----~~l~~l~~~~~~~~-------~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~ 212 (329)
T 3sb4_A 148 -----VTAIFIPLGSSDAY-------RFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK 212 (329)
T ss_dssp -----TCEEEECTTCTHHH-------HTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC
T ss_pred -----CceEEecCcchhhh-------hccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee
Confidence 22222221110000 000000111233456666 4555432 22333322 3567788888776
Q ss_pred CCCCCCCCC-CCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCC
Q 014826 272 ENCEQLPPL-GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGN 350 (418)
Q Consensus 272 ~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 350 (418)
-.......+ ..+++|+.+++.+|. ++.++...| ..+++|+++++.+ +++.++...
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF----------------~~~~~L~~l~l~~--ni~~I~~~a----- 268 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF----------------AQKKYLLKIKLPH--NLKTIGQRV----- 268 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT----------------TTCTTCCEEECCT--TCCEECTTT-----
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh----------------hCCCCCCEEECCc--ccceehHHH-----
Confidence 322111111 237999999999887 888887654 4789999999986 366665333
Q ss_pred cccccCCCcc-EEEEecCCCCCcCC-ccccCCCCccEEEeccCC
Q 014826 351 TVINIMPHLS-SLVIDSCYELKALP-DHIHQTTTLKRLWILNCG 392 (418)
Q Consensus 351 ~~~~~~~~L~-~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~ 392 (418)
...|++|+ ++.+.+ .++.++ ..+..|++|+.|++.++.
T Consensus 269 --F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 269 --FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp --TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred --hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc
Confidence 35789999 999988 688876 478889999999997765
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=2.3e-12 Score=111.22 Aligned_cols=128 Identities=17% Similarity=0.092 Sum_probs=102.3
Q ss_pred eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH-HhhccccccceeeeCCCCCccCch-hhhcCCCC
Q 014826 20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL 97 (418)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L 97 (418)
-++++++++. ++. +|..+ ...+++|++++|.+.+..+ ..+.++++|++|++++|.++.++. .+..+++|
T Consensus 13 ~~~l~~s~n~-----l~~--iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 13 GTTVDCSNQK-----LNK--IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TTEEECCSSC-----CSS--CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCEeEeCCCC-----ccc--CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 3689999987 444 33322 3467899999998655433 347889999999999999987764 78899999
Q ss_pred cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
++|++++|.+....+..++++++|++|++++|.+....|..+..+++|++|++.+|...
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 99999999955545556889999999999999777777888999999999999877654
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=2e-12 Score=109.05 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=91.7
Q ss_pred eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHH-hhccccccceeeeCCCCCccC-chhhhcCCCCc
Q 014826 21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILR-NIKKLVHLRYLNLRFPKIVKL-PETLCELYNLE 98 (418)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~ 98 (418)
++++++++. ++. +|..+ ..+|++|++++|.+.+..+. .+.++++|++|++++|.++.+ |..+..+++|+
T Consensus 11 ~~l~~s~~~-----l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRG-----LKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSC-----CSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCC-----cCc--CccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 677888876 443 33322 23788888888875443332 367788888888888887766 56777888888
Q ss_pred EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+|++++|.+....+..++++++|++|++++|.+.+..|..+..+++|++|++.+|...
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888888855545555778888888888888776667777888888888888777654
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=6e-13 Score=134.96 Aligned_cols=113 Identities=27% Similarity=0.297 Sum_probs=69.4
Q ss_pred HHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhcccc
Q 014826 41 EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120 (418)
Q Consensus 41 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 120 (418)
+..+..+..|++|+|++|.+. .+|..+.++++|++|+|++|.++.+|..+..+++|++|+|++|. +..+|..++++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 445666666777777666633 44445556666777777766666666666666677777777666 3366666666666
Q ss_pred ccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 121 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|++|++++|. +..+|..++++++|++|++.+|...
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 7777776663 3456666666666666666665544
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=3.7e-12 Score=118.65 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=110.9
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhc-cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFR-ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
.++|..+.. .++.|+|++|. ++. ..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++|.++.
T Consensus 31 ~~iP~~~~~--~l~~L~Ls~N~-----l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 31 PNVPQSLPS--YTALLDLSHNN-----LSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp SSCCSSCCT--TCSEEECCSSC-----CCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CccCccCCC--CCCEEECCCCC-----CCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence 457765553 68999999998 444 2234455 89999999999999765555678999999999999999998
Q ss_pred Cc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccc----ccccccceecceeecCC
Q 014826 87 LP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGI----GRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 87 l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~ 156 (418)
++ ..+..+++|++|++++|.+....+..+.++++|++|++++|.+ ..+|..+ ..+++|+.|++.+|...
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 76 4688999999999999996555577899999999999999954 4455543 57899999999877654
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=4.9e-12 Score=106.69 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=100.9
Q ss_pred cCCCCCccccccceeeEEeecCCCCCCCCccHHHHH--HHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC
Q 014826 6 KGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVE--ELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK 83 (418)
Q Consensus 6 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (418)
+-+++|..+.. +|++|++++|. ++. ++ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 19 ~l~~ip~~~~~--~l~~L~l~~n~-----i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 19 GLKEIPRDIPL--HTTELLLNDNE-----LGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp CCSSCCSCCCT--TCSEEECCSCC-----CCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CcCcCccCCCC--CCCEEECCCCc-----CCc--cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 34567876655 99999999998 444 22 247899999999999999777668889999999999999999
Q ss_pred CccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccccc
Q 014826 84 IVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRY 134 (418)
Q Consensus 84 l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 134 (418)
++.++ ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99776 4588999999999999997777788899999999999999976544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=104.43 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=87.8
Q ss_pred eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcE
Q 014826 21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEK 99 (418)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~ 99 (418)
++++++++. ++. +|.. -.++|++|++++|.+. .+|..+.++++|++|++++|.++.++ ..+..+++|++
T Consensus 13 ~~l~~~~~~-----l~~--ip~~--~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKG-----LKV--LPKG--IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSC-----CSS--CCSC--CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCC-----CCc--CCCC--CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 567777776 333 3321 2357888888888743 55667788888888888888887665 45778888888
Q ss_pred EeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 100 LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++.+|...
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888844444456778888888888888554433345777888888887776543
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=5.7e-14 Score=119.30 Aligned_cols=112 Identities=22% Similarity=0.210 Sum_probs=84.4
Q ss_pred HHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccc
Q 014826 40 VEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLI 119 (418)
Q Consensus 40 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 119 (418)
++..+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 44457888888888888887443 55 6778888888888888888888777777888888888887 44455 577888
Q ss_pred cccEEeccCCcccccCC--cccccccccceecceeecCC
Q 014826 120 NMKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 120 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~ 156 (418)
+|++|++++|.+.. ++ ..+..+++|++|++.+|...
T Consensus 116 ~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 116 NLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence 88888888885433 22 35777888888888777653
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=102.85 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=97.0
Q ss_pred CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
-.++|..+. ++|++|++++|. ++. ++..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++.
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~-----i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQ-----FTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSC-----CCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCcCCCCCC--CCCCEEECCCCc-----Cch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 345776654 589999999998 554 55668999999999999999766556678999999999999999998
Q ss_pred Cc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCccc
Q 014826 87 LP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSL 132 (418)
Q Consensus 87 l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~ 132 (418)
++ ..+..+++|++|++++|. +..+|. .+..+++|+.|++++|...
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 76 468899999999999999 555654 5889999999999998654
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=1.6e-11 Score=124.59 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=78.4
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE 89 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 89 (418)
.|..|..++.|+.|+|++|. +.. ++..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++.+|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-----l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-----IFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSC-----CSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred ChhhhccCCCCcEEECCCCC-----CCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccCh
Confidence 35556677777777777776 332 3333446777777777777644 566666777777777777777777776
Q ss_pred hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccc
Q 014826 90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGR 141 (418)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 141 (418)
.+..+++|++|+|++|. ++.+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 67777777777777776 4566766777777777777777665555555543
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=2.3e-11 Score=119.61 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCCCCccccccceeeEEe-ecCCCCCCCCccHHHHHH------Hhcc--CCCccEEecCCCCCcHHHHHhhcccccccee
Q 014826 7 GASLPVSTRRVKRMRTLL-ISASGSDHSSLNAEIVEE------LFRE--STSLRALDVSQVSLPTEILRNIKKLVHLRYL 77 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~------~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 77 (418)
.+.+|..++.+++|++|+ ++.+. +.+ ++. .+.. ...|++|++++|.+.+ +|. +..+++|++|
T Consensus 398 ~~~~~~~l~~l~~L~~L~~l~~n~-----~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L 468 (567)
T 1dce_A 398 LLYEKETLQYFSTLKAVDPMRAAY-----LDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHL 468 (567)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHH-----HHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred ccCCHHHHHHHHhcccCcchhhcc-----cch--hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence 345677888999999998 56553 222 111 1111 2369999999998554 665 8999999999
Q ss_pred eeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccC-CcccccccccceecceeecCC
Q 014826 78 NLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 78 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 156 (418)
++++|.++.+|..+..+++|+.|++++|. +..+| .++++++|+.|++++|.+.+.. |..+..+++|+.|++.+|...
T Consensus 469 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 469 DLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp ECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 99999999999999999999999999999 55588 7999999999999999766655 899999999999999988765
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=4.2e-11 Score=99.53 Aligned_cols=129 Identities=19% Similarity=0.107 Sum_probs=86.5
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L 97 (418)
+.+.++++++. ++. +|. .-.++|++|+++++.+.+..+..+.++++|++|++++|.++.++. .+..+++|
T Consensus 8 ~~~~l~~~~~~-----l~~--~p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 8 SGTEIRCNSKG-----LTS--VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78 (177)
T ss_dssp ETTEEECCSSC-----CSS--CCT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEecCCC-----Ccc--CCC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc
Confidence 34667777776 333 221 223678888888887554444456778888888888888877764 35778888
Q ss_pred cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
++|++++|.+....+..++.+++|++|++++|.+....+..+..+++|++|++.+|...
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 88888888744333334677888888888888554333334567788888887776654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=4.5e-11 Score=99.32 Aligned_cols=119 Identities=22% Similarity=0.279 Sum_probs=94.5
Q ss_pred CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
-.++|..+. ++|++|++++|. ++. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 19 l~~~p~~~~--~~l~~L~l~~n~-----l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 19 LTSVPTGIP--SSATRLELESNK-----LQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp CSSCCTTCC--TTCSEEECCSSC-----CCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CccCCCCCC--CCCcEEEeCCCc-----ccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence 345665444 699999999998 443 233457889999999999998665444557899999999999999998
Q ss_pred Cch-hhhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCccccc
Q 014826 87 LPE-TLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRY 134 (418)
Q Consensus 87 l~~-~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~ 134 (418)
++. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 875 46889999999999998 4566654 68899999999999965543
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=5e-10 Score=105.50 Aligned_cols=309 Identities=13% Similarity=0.020 Sum_probs=163.1
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETL 91 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~ 91 (418)
.|.+|.+|+.+.|... ++. +-...|.+|.+|+.+++..+- .......|.+|..|+.+.+..+ +..+. ..+
T Consensus 66 AF~~c~~L~~i~lp~~------i~~-I~~~aF~~c~~L~~i~lp~~l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST------VRE-IGEFAFENCSKLEIINIPDSV-KMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp TTTTCTTEEEEECCTT------CCE-ECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred HhhCCCCceEEEeCCC------ccC-cchhHhhCCCCCcEEEeCCCc-eEccchhhcccccchhhcccCc-eeeecceee
Confidence 4778888888888643 222 123447888888888886541 2222345777888887666543 22222 334
Q ss_pred hcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccccc
Q 014826 92 CELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLK 171 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 171 (418)
..+..+..........+ -..++.+|.+|+.+.+.++ ....-...+..+.+|+.+.+..+.. .-.-..+.
T Consensus 137 ~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~--------~I~~~~F~ 205 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLK--------IIRDYCFA 205 (394)
T ss_dssp TTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCC--------EECTTTTT
T ss_pred ecccccccccCcccccc--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCce--------EeCchhhc
Confidence 44443333322222211 1235777888888888765 2222334566778888776643211 01112233
Q ss_pred CCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCC
Q 014826 172 NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNT 251 (418)
Q Consensus 172 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 251 (418)
++..|+.+....... ..+. ....+..|+.+.+..... ......+..+..++.+.+..+ ...
T Consensus 206 ~~~~L~~i~~~~~~~--~i~~----~~~~~~~l~~i~ip~~~~------------~i~~~~f~~~~~l~~~~~~~~-~~~ 266 (394)
T 4fs7_A 206 ECILLENMEFPNSLY--YLGD----FALSKTGVKNIIIPDSFT------------ELGKSVFYGCTDLESISIQNN-KLR 266 (394)
T ss_dssp TCTTCCBCCCCTTCC--EECT----TTTTTCCCCEEEECTTCC------------EECSSTTTTCSSCCEEEECCT-TCE
T ss_pred cccccceeecCCCce--Eeeh----hhcccCCCceEEECCCce------------ecccccccccccceeEEcCCC-cce
Confidence 333444333222111 0001 112345677766643321 111234556777787777665 333
Q ss_pred CCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccc
Q 014826 252 VFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLR 331 (418)
Q Consensus 252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 331 (418)
.....+..+..++.+........+ ..+..+.+|+.+.+..+ ++.++...| ..+.+|+.+.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF----------------~~c~~L~~i~ 326 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAF----------------ESCTSLVSID 326 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTT----------------TTCTTCCEEC
T ss_pred eeccccccccccceeccCceeecc--ccccccccccccccccc--cceechhhh----------------cCCCCCCEEE
Confidence 334455567777777665442111 12556777777777543 555655443 3566777776
Q ss_pred cccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccC
Q 014826 332 IEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNC 391 (418)
Q Consensus 332 l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c 391 (418)
+.+ +++.+... ....|.+|+++.+.. .++.++. .+..|++|+.+.+...
T Consensus 327 lp~--~v~~I~~~-------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 327 LPY--LVEEIGKR-------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCT--TCCEECTT-------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred eCC--cccEEhHH-------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 642 34444322 223677777777754 3666553 5666777777777543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=3e-11 Score=100.29 Aligned_cols=114 Identities=17% Similarity=0.049 Sum_probs=92.8
Q ss_pred CCCCccccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 8 ASLPVSTRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 8 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
.++|. +..+. +|++|++++|. +++ + ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 32 ~~i~~-~~~~~~~L~~L~Ls~N~-----l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 102 (176)
T 1a9n_A 32 PVIEN-LGATLDQFDAIDFSDNE-----IRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102 (176)
T ss_dssp CSCCC-GGGGTTCCSEEECCSSC-----CCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred chhHH-hhhcCCCCCEEECCCCC-----CCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc
Confidence 34554 44444 99999999998 554 3 348899999999999999654323345889999999999999998
Q ss_pred Cch--hhhcCCCCcEEeccCccCcccCChh----hhccccccEEeccCCcc
Q 014826 87 LPE--TLCELYNLEKLDISYCFNLKELPEG----IGKLINMKHLLNRGTNS 131 (418)
Q Consensus 87 l~~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~ 131 (418)
+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|++++|..
T Consensus 103 ~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 103 LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 886 78899999999999999 5567764 88999999999998843
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=3.1e-12 Score=108.54 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=83.9
Q ss_pred hccCCCccEEecCCCCCcHH------HHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhc
Q 014826 44 FRESTSLRALDVSQVSLPTE------ILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGK 117 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 117 (418)
+.....++.++++.+.+.+. +|..+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhc
Confidence 45555555555555444333 3447888999999999999988888 78889999999999998 5578887888
Q ss_pred cccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 118 LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 118 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+++|+.|++++|.+. .+| .+..+++|++|++.+|...
T Consensus 92 ~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECC
T ss_pred CCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCC
Confidence 899999999998544 355 5778889999998887654
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.5e-08 Score=93.69 Aligned_cols=261 Identities=9% Similarity=0.063 Sum_probs=148.7
Q ss_pred cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhccccccE
Q 014826 46 ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKH 123 (418)
Q Consensus 46 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 123 (418)
.+..++.+.+...- ...-..+|.++ +|+.+.+..+ ++.++ ..|.+ .+|+.+.+... +..++ .++.+|.+|+.
T Consensus 111 ~~~~l~~i~ip~~i-~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNSV-KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTTC-CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCcc-CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCe
Confidence 34566666665431 11112345554 5677766554 44444 23444 35777776652 33332 34666777777
Q ss_pred EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826 124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203 (418)
Q Consensus 124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 203 (418)
+++..+. ...++.....+.+|+.+.+..+ +.. .....+..|++
T Consensus 185 l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~---------------------------------l~~---I~~~aF~~~~~ 227 (401)
T 4fdw_A 185 ADLSKTK-ITKLPASTFVYAGIEEVLLPVT---------------------------------LKE---IGSQAFLKTSQ 227 (401)
T ss_dssp EECTTSC-CSEECTTTTTTCCCSEEECCTT---------------------------------CCE---ECTTTTTTCTT
T ss_pred eecCCCc-ceEechhhEeecccCEEEeCCc---------------------------------hhe---ehhhHhhCCCC
Confidence 7776652 2333333333455555544211 000 00113445566
Q ss_pred ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC----CCC-
Q 014826 204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE----QLP- 278 (418)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~- 278 (418)
|+.+.+..+-. ..-...+.. .+|+.+.+..+ +......++.+|++|+.+.+.++.... .++
T Consensus 228 L~~l~l~~~l~------------~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 228 LKTIEIPENVS------------TIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp CCCEECCTTCC------------EECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred CCEEecCCCcc------------Ccccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH
Confidence 66666654311 011122333 57888888544 444455677789999999998876541 122
Q ss_pred -CCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCC
Q 014826 279 -PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMP 357 (418)
Q Consensus 279 -~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 357 (418)
.+..|++|+.+++... ++.++...| ..+++|+.+.+.. +++.+.... ...+
T Consensus 294 ~aF~~c~~L~~l~l~~~--i~~I~~~aF----------------~~c~~L~~l~lp~--~l~~I~~~a-------F~~~- 345 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPES--IRILGQGLL----------------GGNRKVTQLTIPA--NVTQINFSA-------FNNT- 345 (401)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTT----------------TTCCSCCEEEECT--TCCEECTTS-------SSSS-
T ss_pred HHhhCCccCCeEEeCCc--eEEEhhhhh----------------cCCCCccEEEECc--cccEEcHHh-------CCCC-
Confidence 3788999999999843 777776654 3678899888853 465554332 2467
Q ss_pred CccEEEEecCCCCCcCC-ccccCC-CCccEEEeccCC
Q 014826 358 HLSSLVIDSCYELKALP-DHIHQT-TTLKRLWILNCG 392 (418)
Q Consensus 358 ~L~~L~l~~c~~l~~~~-~~~~~~-~~L~~L~l~~c~ 392 (418)
+|+++.+.++ .+..++ ..+..+ .+++.|.+....
T Consensus 346 ~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 346 GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 9999999988 455544 344445 478899987754
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=6e-10 Score=103.74 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=15.0
Q ss_pred hhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826 231 EALRPPLDLKELEIQFNRGNTVFPSWMT 258 (418)
Q Consensus 231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 258 (418)
..+..+++|++|++++|.+.+.....+.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 3344456666666666655544444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=5.7e-10 Score=91.90 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=65.5
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L 97 (418)
..++++++++. ++. +|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.++.+|. .+..+++|
T Consensus 10 ~~~~l~~s~n~-----l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKS-----LAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSC-----CSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEeCCCC-----cCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 45667777776 333 33212 3667777777777555445566777777777777777776664 34677777
Q ss_pred cEEeccCccCcccCCh-hhhccccccEEeccCCcc
Q 014826 98 EKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNS 131 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 131 (418)
++|++++|. +..++. .+..+++|++|++++|.+
T Consensus 81 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 81 TQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 777777776 334443 466777777777777644
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=7.5e-10 Score=91.50 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=69.1
Q ss_pred eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-hhcCCCCc
Q 014826 20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-LCELYNLE 98 (418)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~ 98 (418)
-+.++++++. ++. +|..+ .++|++|++++|.+.+..|..+.++++|++|++++|.++.+|.. +..+++|+
T Consensus 14 ~~~l~~~~n~-----l~~--iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIR-----LAS--VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SSEEECCSSC-----CSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEEeCCCC-----CCc--cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 3667777776 333 33212 26778888888776555566677778888888888877777643 46777888
Q ss_pred EEeccCccCcccCCh-hhhccccccEEeccCCcc
Q 014826 99 KLDISYCFNLKELPE-GIGKLINMKHLLNRGTNS 131 (418)
Q Consensus 99 ~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 131 (418)
+|++++|. +..+|. .++.+++|++|++++|.+
T Consensus 85 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 85 QLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred EEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 88888777 444554 377777788888777743
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=3.1e-09 Score=99.91 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=30.8
Q ss_pred hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826 232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 295 (418)
.+..|++|+.+.+..+ +......++.+|.+|+.+.+..+-..-.-..+..+ +|+.+++.++.
T Consensus 295 aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 295 CLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSS
T ss_pred HhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCC
Confidence 4455666666666532 33333344556666666666444111111125555 66666666554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=5.8e-10 Score=103.83 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=108.6
Q ss_pred cceeeEEeecCCCCCCCCccHH---HHHHHhcc-CCCccEEecCCCCCcHHHHHh-hccccccceeeeCCCCCccCc---
Q 014826 17 VKRMRTLLISASGSDHSSLNAE---IVEELFRE-STSLRALDVSQVSLPTEILRN-IKKLVHLRYLNLRFPKIVKLP--- 88 (418)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~--- 88 (418)
.+.|++|+|++|. ++.. .+...+.. ..+|++|+|++|.+.+..... ...+++|++|++++|.++...
T Consensus 71 ~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVR-----MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSC-----CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCC-----CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 4579999999998 4442 24444443 369999999999876654333 355788999999999887332
Q ss_pred --hhh-hcCCCCcEEeccCccCcc----cCChhhhccccccEEeccCCccccc----CCcccccccccceecceeecCCC
Q 014826 89 --ETL-CELYNLEKLDISYCFNLK----ELPEGIGKLINMKHLLNRGTNSLRY----MPVGIGRLTGLRTLGEFRVSAGG 157 (418)
Q Consensus 89 --~~~-~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~ 157 (418)
..+ ...++|+.|++++|.+.. .++..+..+++|++|++++|.+... ++..+...++|++|++.+|....
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 223 246889999999998433 2444567788999999999965432 35566777899999998887651
Q ss_pred CCCCccccccccccCCcccccccccccC
Q 014826 158 DVDGRKACRLESLKNLEHLQVCGIRRLG 185 (418)
Q Consensus 158 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 185 (418)
.. .......+...+.|+.+++....
T Consensus 226 ~g---~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TA---ALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HH---HHHHHHHHHHCSSCCEEECTTSS
T ss_pred HH---HHHHHHHHHhCCCCCEEeccCCC
Confidence 00 11222334455677777776554
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=1.8e-09 Score=88.82 Aligned_cols=104 Identities=23% Similarity=0.198 Sum_probs=83.7
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEec
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLN 126 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l 126 (418)
..++++++++.+ ..+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|. +..++. .+.++++|++|++
T Consensus 10 ~~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 457899999884 4455444 37899999999999977 5678899999999999999 445554 4689999999999
Q ss_pred cCCcccccCCcccccccccceecceeecCC
Q 014826 127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
++|.+....+..+..+++|++|++.+|...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999665544556889999999999888765
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.9e-09 Score=87.96 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=82.9
Q ss_pred ccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCChh-hhccccccEEecc
Q 014826 50 LRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNR 127 (418)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~ 127 (418)
-+.++++++. .+.+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|. +..+|.. ++++++|++|+++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 4789999988 455665443 7899999999999877 5678899999999999998 5556654 6889999999999
Q ss_pred CCcccccCCcccccccccceecceeecCC
Q 014826 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
+|.+....+..+..+++|++|++.+|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99655444445889999999999888765
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=4.1e-08 Score=92.37 Aligned_cols=287 Identities=9% Similarity=0.016 Sum_probs=168.2
Q ss_pred HHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhcccc
Q 014826 42 ELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120 (418)
Q Consensus 42 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 120 (418)
..|.+|.+|+.+.+..+ +......+|.+|.+|+.+++..+ ++.++ ..+.++.+|+.+.+...- ...-..++.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecccc
Confidence 34778888888888654 22222345788888888888654 44444 456677777776665442 1111223444443
Q ss_pred ccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCC
Q 014826 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDK 200 (418)
Q Consensus 121 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~ 200 (418)
+........ ...-...+..|++|+.+.+..... .-.-..+.++..|+.+.+... +... ....+..
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~--------~I~~~~F~~c~~L~~i~l~~~--~~~I---~~~~F~~ 206 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSME--------TLHNGLFSGCGKLKSIKLPRN--LKII---RDYCFAE 206 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC--------EECTTTTTTCTTCCBCCCCTT--CCEE---CTTTTTT
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCccc--------eeccccccCCCCceEEEcCCC--ceEe---Cchhhcc
Confidence 333322222 112234577889999887743221 112233455555555554322 1111 1224567
Q ss_pred cccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCC
Q 014826 201 KKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPL 280 (418)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l 280 (418)
|..|+.+.+..+... .......+..|+.+.+... ........+..+.+++.+.+..+...-....+
T Consensus 207 ~~~L~~i~~~~~~~~-------------i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F 272 (394)
T 4fs7_A 207 CILLENMEFPNSLYY-------------LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLF 272 (394)
T ss_dssp CTTCCBCCCCTTCCE-------------ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTT
T ss_pred ccccceeecCCCceE-------------eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeecccc
Confidence 788888877554321 1223345678999988654 33333445668999999999877443333346
Q ss_pred CCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCcc
Q 014826 281 GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLS 360 (418)
Q Consensus 281 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~ 360 (418)
..+..++.+...... ++... ...+.+|+.+.+.+ +++.+... ....|.+|+
T Consensus 273 ~~~~~l~~~~~~~~~----i~~~~----------------F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~ 323 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI----VPEKT----------------FYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLV 323 (394)
T ss_dssp TTCTTCCEEEECSSE----ECTTT----------------TTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCC
T ss_pred ccccccceeccCcee----ecccc----------------cccccccccccccc--ccceechh-------hhcCCCCCC
Confidence 777888777665432 33332 33677888887753 45554422 234789999
Q ss_pred EEEEecCCCCCcCCc-cccCCCCccEEEeccC
Q 014826 361 SLVIDSCYELKALPD-HIHQTTTLKRLWILNC 391 (418)
Q Consensus 361 ~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c 391 (418)
+++|.+ .++.++. .+..|++|+.+.+..+
T Consensus 324 ~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 324 SIDLPY--LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred EEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence 999964 4777764 6778999999998654
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.5e-08 Score=84.47 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=55.7
Q ss_pred ccccceeeEEeecCC-CCCCCCccHHH---HHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc
Q 014826 14 TRRVKRMRTLLISAS-GSDHSSLNAEI---VEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV 85 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~-~~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~ 85 (418)
+..++.|++|+|++| . +++.. +...+...++|++|+|++|.+.+. +...+...++|++|++++|.++
T Consensus 32 l~~~~~L~~L~L~~n~~-----i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMN-----IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTT-----CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCC-----CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 345556666666665 4 33322 334445555666666666654433 2233344455666666666655
Q ss_pred c-----CchhhhcCCCCcEEec--cCccCccc----CChhhhccccccEEeccCC
Q 014826 86 K-----LPETLCELYNLEKLDI--SYCFNLKE----LPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 86 ~-----l~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~ 129 (418)
. +...+...++|++|++ ++|.+... +...+...++|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 2 3344455555666666 45553222 2223334455666666555
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=3.1e-07 Score=86.35 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred hhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826 256 WMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL 335 (418)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 335 (418)
++..+.+|+.+.+......-.-..+..+++|+.+.+... ++.++...| ..+.+|+.+.+..
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF----------------~~c~~L~~i~lp~- 320 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVF----------------AGCISLKSIDIPE- 320 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT----------------TTCTTCCEEECCT-
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceee----------------cCCCCcCEEEeCC-
Confidence 444566666666654432212223555666666666422 445554432 2455666665542
Q ss_pred cccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccCC
Q 014826 336 MELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNCG 392 (418)
Q Consensus 336 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~ 392 (418)
+++.+.. .....|.+|+++.|-+ .++.++. .+..|++|+.+.+.++.
T Consensus 321 -~v~~I~~-------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 321 -GITQILD-------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -TCCEECT-------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred -cccEehH-------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 2333321 1123566677766643 3555543 45566777777666554
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=1.4e-07 Score=88.76 Aligned_cols=314 Identities=10% Similarity=0.069 Sum_probs=166.5
Q ss_pred cccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC---CcHHHHHhhccccccceeeeCCCCCccCc
Q 014826 13 STRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS---LPTEILRNIKKLVHLRYLNLRFPKIVKLP 88 (418)
Q Consensus 13 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 88 (418)
.|.+|. .|+.+.+... ++. +-...|.+|.+|+.+.+..+. +......+|.+|.+|+.+.+..+ ++.++
T Consensus 58 aF~~~~~~L~sI~iP~s------vt~-Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT------VTE-IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp TTTTCCSCCCEEEECTT------CCE-ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred hccCCCCcCEEEEECCC------eeE-EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 577885 6999999753 222 223458899999999986542 22222345788888988877654 44444
Q ss_pred -hhhhcCCCCcEEeccCccCcccC-ChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826 89 -ETLCELYNLEKLDISYCFNLKEL-PEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166 (418)
Q Consensus 89 -~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 166 (418)
..+..+.+|+.+.+.... ..+ ...+..+.+|+.+.+..+ . ..+.........|+.+.+..... ...
T Consensus 130 ~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~-~~I~~~aF~~~~l~~i~ip~~~~--------~i~ 197 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS-V-TAIEERAFTGTALTQIHIPAKVT--------RIG 197 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCCCSEEEECTTCC--------EEC
T ss_pred hhhhhhhccccccccccee--eeecccceecccccccccccce-e-eEeccccccccceeEEEECCccc--------ccc
Confidence 457788999999986542 223 235677888888888765 2 22222222334566554422111 001
Q ss_pred cccccCCcccccccccccCC--Ccch-------hhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCC
Q 014826 167 LESLKNLEHLQVCGIRRLGD--VSDV-------GEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL 237 (418)
Q Consensus 167 ~~~l~~L~~L~~l~~~~~~~--~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (418)
...+..+..+.......... .... .............+..+.+-.. ........+..|.
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~------------v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG------------VARIETHAFDSCA 265 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT------------EEEECTTTTTTCS
T ss_pred cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc------------ceEcccceeeecc
Confidence 11122222222211110000 0000 0000000011122222222111 1111234566788
Q ss_pred CCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCC--CCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826 238 DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLP--PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS 315 (418)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 315 (418)
.|+.+.+... .......++.++.+|+.+.+... ...++ .+..|.+|+.+.|..+ ++.++...|
T Consensus 266 ~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF---------- 330 (394)
T 4gt6_A 266 YLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAF---------- 330 (394)
T ss_dssp SCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT----------
T ss_pred cccEEecccc-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHh----------
Confidence 8888888655 33334456668889999888643 22233 3778899999988754 667776553
Q ss_pred CCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccC
Q 014826 316 SSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNC 391 (418)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c 391 (418)
..|.+|+++.+-. +++.+... ....|++|+.+++.+.. ..+ ..+..+.+|+.+.+..+
T Consensus 331 ------~~C~~L~~i~ip~--sv~~I~~~-------aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 331 ------AGCEQLERIAIPS--SVTKIPES-------AFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ------TTCTTCCEEEECT--TCCBCCGG-------GGTTCTTCCEEEESSCH--HHH-HTCBCCCCC--------
T ss_pred ------hCCCCCCEEEECc--ccCEEhHh-------HhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCCC
Confidence 3678888887753 35554322 22478999999998752 112 23445788888877543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=4.1e-08 Score=90.63 Aligned_cols=101 Identities=18% Similarity=0.237 Sum_probs=63.6
Q ss_pred EEeecCC-CCCCCCccHHHHHHHhccCCCccEEecCC-CCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCc
Q 014826 22 TLLISAS-GSDHSSLNAEIVEELFRESTSLRALDVSQ-VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLE 98 (418)
Q Consensus 22 ~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~ 98 (418)
.++++++ . ++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+..++ ..|..+++|+
T Consensus 12 ~v~~~~~n~-----l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGA-----LDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCC-----CTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCC-----CCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 4566665 4 454 555 67777777777775 6654444455677777777777777776554 4566777777
Q ss_pred EEeccCccCcccCChhhhccccccEEeccCCcc
Q 014826 99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNS 131 (418)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 131 (418)
+|+|++|. +..+|..+....+|+.|++.+|.+
T Consensus 84 ~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 84 RLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp EEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred EEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 77777777 444554333323377777777643
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=8.5e-08 Score=78.06 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=71.7
Q ss_pred CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcHHHHHhhcc----ccccceeeeCC
Q 014826 7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPTEILRNIKK----LVHLRYLNLRF 81 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~----l~~L~~L~l~~ 81 (418)
+..+|.....-..|+.||+++|. +++.++.. +..|++|+.|+|++|. +++.....+.. +++|++|++++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~-----Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSC-----IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCC-----CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES
T ss_pred cccCCcccCCCceEeEEeCcCCC-----ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC
Confidence 44577655455689999999997 66655655 6899999999999985 55555555655 35799999998
Q ss_pred CC-CccCc-hhhhcCCCCcEEeccCccCccc
Q 014826 82 PK-IVKLP-ETLCELYNLEKLDISYCFNLKE 110 (418)
Q Consensus 82 ~~-l~~l~-~~~~~l~~L~~L~l~~~~~~~~ 110 (418)
|. ++.-. ..+..+++|++|++++|..+++
T Consensus 124 C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 124 CGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 86 66321 3466788999999998875554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=8.7e-08 Score=88.43 Aligned_cols=102 Identities=14% Similarity=0.013 Sum_probs=82.4
Q ss_pred cEEecCCC-CCcHHHHHhhccccccceeeeCC-CCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 51 RALDVSQV-SLPTEILRNIKKLVHLRYLNLRF-PKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 51 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
..++.+++ . ...+|. +..+++|++|+|++ |.++.++ ..+..+++|+.|+|++|.+.+..|..++++++|++|+|+
T Consensus 11 ~~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 6 556888 99999999999996 9999887 578899999999999999666566678999999999999
Q ss_pred CCcccccCCcc-cccccccceecceeecCC
Q 014826 128 GTNSLRYMPVG-IGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 128 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~ 156 (418)
+|.+. .+|.. +..++ |+.|++.+|.+.
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 99655 45544 44444 999999888765
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1e-07 Score=79.34 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=90.0
Q ss_pred HHHHHHhccCCCccEEecCCC-CCcHH----HHHhhccccccceeeeCCCCCc-----cCchhhhcCCCCcEEeccCccC
Q 014826 38 EIVEELFRESTSLRALDVSQV-SLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPETLCELYNLEKLDISYCFN 107 (418)
Q Consensus 38 ~~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~ 107 (418)
+.+...+...+.|++|+|++| .+... +...+...++|++|++++|.++ .+...+...++|++|++++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 357777899999999999999 86654 4455677889999999999987 3456677789999999999985
Q ss_pred ccc----CChhhhccccccEEec--cCCccccc----CCcccccccccceecceeecC
Q 014826 108 LKE----LPEGIGKLINMKHLLN--RGTNSLRY----MPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 108 ~~~----~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 155 (418)
... +...+...++|++|++ ++|.+... +...+...++|++|++.+|..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 443 3455677789999999 77855443 344556668888888876654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.54 E-value=1.7e-08 Score=82.21 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=70.1
Q ss_pred CccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEE
Q 014826 284 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLV 363 (418)
Q Consensus 284 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~ 363 (418)
.+|++|++++|. +++.+... +..+++|+.|++++|.++++..+...... ...+++|++|+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~----------------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~---~~~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH----------------MEGLQYVEKIRLCKCHYIEDGCLERLSQL---ENLQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG----------------GTTCSCCCEEEEESCTTCCHHHHHHHHTC---HHHHHHCCEEE
T ss_pred ceEeEEeCcCCC-ccHHHHHH----------------hcCCCCCCEEEeCCCCccCHHHHHHHHhc---ccccCCCCEEE
Confidence 468888888887 54444332 45799999999999999998876655000 00146899999
Q ss_pred EecCCCCCcCC-ccccCCCCccEEEeccCCchhcc
Q 014826 364 IDSCYELKALP-DHIHQTTTLKRLWILNCGPLGER 397 (418)
Q Consensus 364 l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~ 397 (418)
|++|+++++.. ..+..+++|+.|+|++|+.+++.
T Consensus 121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 99999998643 24567999999999999988864
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=7.6e-08 Score=88.85 Aligned_cols=169 Identities=13% Similarity=0.075 Sum_probs=100.7
Q ss_pred CCccccccceeeEEeecCCCCCCCCc---cHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSL---NAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (418)
+..+..++++|+.|.+.+.......+ ....+...+..+++|+.|+++++.-. .++. + .+++|+.|++..+.+..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 34566788899999987653110011 10125566788999999999887311 1222 3 37899999999887652
Q ss_pred C-chhhh--cCCCCcEEeccCc--cCcc-----cCChhh--hccccccEEeccCCcccccCCccc---ccccccceecce
Q 014826 87 L-PETLC--ELYNLEKLDISYC--FNLK-----ELPEGI--GKLINMKHLLNRGTNSLRYMPVGI---GRLTGLRTLGEF 151 (418)
Q Consensus 87 l-~~~~~--~l~~L~~L~l~~~--~~~~-----~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~ 151 (418)
- ...+. .+++|+.|+|..+ ...+ .+...+ ..+++|++|++.+|.+....+..+ ..+++|++|++.
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 2 12333 7899999998632 1111 122222 247899999999886554332222 257899999997
Q ss_pred eecCCCCCCCccccccccccCCccccccccccc
Q 014826 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL 184 (418)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 184 (418)
.+..... ........++++++|+.+++..+
T Consensus 288 ~n~L~d~---G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 288 AGVLTDE---GARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SSCCBHH---HHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCChH---HHHHHHhhcccCCcceEEECCCC
Confidence 6654310 00112333455667777766544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=1.1e-06 Score=82.09 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=37.5
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
+....+|+.+.+... ++. +-...|.+|.+|+.+.+..+ +......+|.++ +|+.+.+..+ +..++.....
T Consensus 42 ~~~~~~i~~v~ip~~------vt~-Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~ 111 (379)
T 4h09_A 42 YKDRDRISEVRVNSG------ITS-IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ 111 (379)
T ss_dssp GGGGGGCSEEEECTT------EEE-ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred cccccCCEEEEeCCC------ccC-hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec
Confidence 445556666666542 332 12234666666666666543 121112335555 4555544332 3333322222
Q ss_pred CCCCcEEeccCc
Q 014826 94 LYNLEKLDISYC 105 (418)
Q Consensus 94 l~~L~~L~l~~~ 105 (418)
..+|+.+.+...
T Consensus 112 ~~~L~~i~lp~~ 123 (379)
T 4h09_A 112 GTDLDDFEFPGA 123 (379)
T ss_dssp TCCCSEEECCTT
T ss_pred cCCcccccCCCc
Confidence 235666666543
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=2.4e-07 Score=85.46 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhc-CCCccEEEeeCCC
Q 014826 199 DKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTS-LTNLKSLGLSLCE 272 (418)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~ 272 (418)
..+++|+.|+++.|.+.. .....+...+..+++|+.|+++.|.+++.....+.. + ...++++.+.
T Consensus 276 ~~~~~L~~LdLs~n~L~d-------~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTD-------EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SSGGGCSEEECCSSCCBH-------HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCCCCEEECCCCCCCh-------HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 356899999998886521 001223444456799999999998766554444443 3 3446666654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=2e-06 Score=75.38 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=53.8
Q ss_pred ccccccceeeeCCCCCccCc---hhhhcCCCCcEEeccCccCcccCChhhhccc--cccEEeccCCcccccCC-------
Q 014826 69 KKLVHLRYLNLRFPKIVKLP---ETLCELYNLEKLDISYCFNLKELPEGIGKLI--NMKHLLNRGTNSLRYMP------- 136 (418)
Q Consensus 69 ~~l~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~------- 136 (418)
.++++|+.|++++|.+..++ ..+..+++|+.|+|++|.+. .+ ..+..+. +|++|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46778888888888866543 55667888888888888733 33 2233333 78888888887665444
Q ss_pred cccccccccceecc
Q 014826 137 VGIGRLTGLRTLGE 150 (418)
Q Consensus 137 ~~l~~l~~L~~L~l 150 (418)
..+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23567788887763
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=4e-05 Score=71.34 Aligned_cols=80 Identities=6% Similarity=0.133 Sum_probs=49.2
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccc
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINM 121 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L 121 (418)
+....+|+.+.+... +......+|.+|.+|+.+.+..+ ++.++ ..|.++ +|+.+.+..+ ...++. ++.. .+|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCc
Confidence 556678888888754 12222356888999999998654 55555 345555 5777766543 333332 2443 378
Q ss_pred cEEeccCC
Q 014826 122 KHLLNRGT 129 (418)
Q Consensus 122 ~~L~l~~~ 129 (418)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 88887654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=5.4e-06 Score=72.60 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=33.4
Q ss_pred cCCCCcEEeccCccCcc--cCChhhhccccccEEeccCCcccccCCccccccc--ccceecceeecCC
Q 014826 93 ELYNLEKLDISYCFNLK--ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLT--GLRTLGEFRVSAG 156 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~ 156 (418)
.+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|.+.+. ..+..+. +|+.|++.+|...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 46666666666666333 3334455666666666666644332 2233333 5666666655543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=0.00012 Score=60.58 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHhccCCCccEEecCCC-CCcHH----HHHhhccccccceeeeCCCCCc-----cCchhhhcCCCCcEEeccCccCc
Q 014826 39 IVEELFRESTSLRALDVSQV-SLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPETLCELYNLEKLDISYCFNL 108 (418)
Q Consensus 39 ~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~ 108 (418)
.+...+.+-+.|+.|+|+++ .+.+. +.+.+..-..|+.|+|++|.++ .+...+...+.|+.|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34444455555555555553 43322 2333444445555555555544 23344445555555665555533
Q ss_pred cc----CChhhhccccccEEeccC
Q 014826 109 KE----LPEGIGKLINMKHLLNRG 128 (418)
Q Consensus 109 ~~----~~~~l~~l~~L~~L~l~~ 128 (418)
.. +..++..-..|++|++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCC
Confidence 22 112233334456666553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.00043 Score=57.30 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=80.9
Q ss_pred ccccceeeEEeecCCCCCCCCccHH---HHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc-
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAE---IVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV- 85 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~- 85 (418)
..+-+.|+.|+|+++. .+++. .+.+.+..-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.++
T Consensus 37 l~~n~~L~~L~L~~nn----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMK----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCC----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCC----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3456789999999863 25553 3567778888999999999997765 3444556688999999999987
Q ss_pred ----cCchhhhcCCCCcEEeccCccC--ccc-----CChhhhccccccEEeccCC
Q 014826 86 ----KLPETLCELYNLEKLDISYCFN--LKE-----LPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 86 ----~l~~~~~~l~~L~~L~l~~~~~--~~~-----~~~~l~~l~~L~~L~l~~~ 129 (418)
.+.+.+..-..|+.|+|+++.. ++. +...+..-++|+.|+++.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3445666778899999986532 221 2334555678888888766
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.53 E-value=0.22 Score=38.01 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=27.2
Q ss_pred eeeeCCCCCc--cCchhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCC
Q 014826 76 YLNLRFPKIV--KLPETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGT 129 (418)
Q Consensus 76 ~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 129 (418)
.++.++..++ .+|..+ -.+|+.|+|++|. +..++. .+..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 4455555555 555332 2346666666666 444433 3455666666666665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.36 E-value=0.29 Score=37.25 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=36.1
Q ss_pred EEecCCCCCc-HHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcc
Q 014826 52 ALDVSQVSLP-TEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLK 109 (418)
Q Consensus 52 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~ 109 (418)
+++.++..+. ..+|..+ -++|++|+|++|.++.++ ..+..+++|+.|+|.+|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5555555532 1344221 135888888888888777 456778888888888887443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.88 E-value=18 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=16.9
Q ss_pred CCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeC
Q 014826 233 LRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSL 270 (418)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 270 (418)
+..|.+|+.+.+-.+ +......+|.+|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555443 3333333444555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.04 E-value=45 Score=23.52 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=18.8
Q ss_pred ccccccccccccccccccc--cccCCcccccCCCccEEEEec
Q 014826 327 LKSLRIEGLMELEEWDYGI--TRTGNTVINIMPHLSSLVIDS 366 (418)
Q Consensus 327 L~~L~l~~~~~l~~l~~~~--~~~~~~~~~~~~~L~~L~l~~ 366 (418)
+..=.+.+|..|+.+.+.. ...|+.....|.+|+++.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 3333344444444433221 223334445666677766655
Done!