Query 014827
Match_columns 418
No_of_seqs 221 out of 2337
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 3.2E-41 7E-46 339.4 36.2 350 24-376 177-554 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 1.7E-39 3.7E-44 324.7 34.0 346 24-372 101-474 (474)
3 PLN02612 phytoene desaturase 100.0 1.7E-37 3.7E-42 316.0 36.0 349 20-377 192-550 (567)
4 TIGR02731 phytoene_desat phyto 100.0 3.2E-34 7E-39 287.0 34.7 343 21-372 99-453 (453)
5 TIGR03467 HpnE squalene-associ 100.0 5.5E-34 1.2E-38 282.7 34.0 329 23-373 88-419 (419)
6 PRK07233 hypothetical protein; 100.0 4E-30 8.7E-35 256.3 32.6 329 33-376 99-432 (434)
7 COG1232 HemY Protoporphyrinoge 100.0 1.8E-27 3.8E-32 230.6 25.8 290 64-372 129-443 (444)
8 PRK12416 protoporphyrinogen ox 100.0 2.9E-27 6.2E-32 237.5 26.5 321 27-375 111-461 (463)
9 TIGR00562 proto_IX_ox protopor 100.0 7.7E-27 1.7E-31 234.5 28.4 325 24-375 100-460 (462)
10 PLN02576 protoporphyrinogen ox 100.0 7.9E-27 1.7E-31 236.4 27.7 330 25-376 107-488 (496)
11 PRK07208 hypothetical protein; 100.0 3E-26 6.6E-31 231.1 28.4 310 68-389 131-472 (479)
12 PRK11883 protoporphyrinogen ox 99.9 2.1E-25 4.5E-30 223.5 26.3 313 33-373 112-450 (451)
13 COG3349 Uncharacterized conser 99.9 9.7E-26 2.1E-30 217.4 19.6 370 2-377 80-465 (485)
14 TIGR02733 desat_CrtD C-3',4' d 99.9 1.4E-21 3E-26 197.8 29.5 293 67-374 167-491 (492)
15 PLN02268 probable polyamine ox 99.9 4.4E-22 9.5E-27 198.5 21.2 280 66-375 130-434 (435)
16 PLN02529 lysine-specific histo 99.9 4.7E-20 1E-24 190.0 25.9 286 66-376 285-599 (738)
17 TIGR02734 crtI_fam phytoene de 99.9 1.5E-19 3.3E-24 183.4 28.4 295 67-379 159-496 (502)
18 PLN02568 polyamine oxidase 99.9 6.4E-20 1.4E-24 185.3 23.7 296 69-376 160-536 (539)
19 PF01593 Amino_oxidase: Flavin 99.9 2.4E-20 5.3E-25 185.1 18.6 298 64-372 137-450 (450)
20 PLN02676 polyamine oxidase 99.9 4.9E-20 1.1E-24 184.8 20.5 296 66-377 155-475 (487)
21 TIGR02730 carot_isom carotene 99.8 4.1E-19 9E-24 179.5 26.8 294 68-376 168-493 (493)
22 PLN03000 amine oxidase 99.8 2.2E-19 4.9E-24 185.6 24.6 231 128-377 374-625 (881)
23 KOG1276 Protoporphyrinogen oxi 99.8 9.9E-20 2.1E-24 169.9 18.3 290 66-372 152-490 (491)
24 PLN02328 lysine-specific histo 99.8 9.4E-19 2E-23 181.2 25.7 230 128-376 430-680 (808)
25 PLN02976 amine oxidase 99.8 2.8E-19 6.2E-24 189.7 21.7 260 99-379 904-1190(1713)
26 COG1231 Monoamine oxidase [Ami 99.8 8.3E-19 1.8E-23 166.6 18.9 230 130-376 204-448 (450)
27 KOG4254 Phytoene desaturase [C 99.7 9E-15 1.9E-19 137.6 24.1 239 125-376 254-547 (561)
28 COG3380 Predicted NAD/FAD-depe 99.6 4.6E-16 1E-20 137.4 7.9 220 132-375 105-331 (331)
29 KOG0029 Amine oxidase [Seconda 99.6 2.5E-14 5.5E-19 142.4 16.4 230 129-376 213-460 (501)
30 COG1233 Phytoene dehydrogenase 99.6 1.6E-13 3.4E-18 138.2 19.5 287 67-375 164-483 (487)
31 COG2907 Predicted NAD/FAD-bind 99.5 1.5E-13 3.2E-18 125.6 14.1 161 62-233 143-308 (447)
32 KOG0685 Flavin-containing amin 99.5 3.4E-13 7.4E-18 128.5 16.8 238 128-376 216-492 (498)
33 PRK13977 myosin-cross-reactive 99.4 1E-10 2.2E-15 116.9 24.4 301 65-375 158-524 (576)
34 PTZ00363 rab-GDP dissociation 99.3 3.5E-11 7.5E-16 118.8 16.4 164 25-191 118-287 (443)
35 PF00996 GDI: GDP dissociation 98.8 1.3E-07 2.9E-12 92.5 15.8 160 26-189 119-284 (438)
36 PF06100 Strep_67kDa_ant: Stre 98.7 3.2E-06 6.9E-11 82.6 22.0 312 38-368 121-499 (500)
37 PF07156 Prenylcys_lyase: Pren 98.5 8.5E-06 1.8E-10 78.6 18.8 118 66-196 66-189 (368)
38 TIGR02352 thiamin_ThiO glycine 98.3 8.1E-05 1.7E-09 71.5 19.8 196 136-373 137-335 (337)
39 PF01266 DAO: FAD dependent ox 98.2 6.4E-05 1.4E-09 72.5 17.0 63 136-201 147-209 (358)
40 PRK00711 D-amino acid dehydrog 98.2 0.00024 5.1E-09 70.5 20.3 57 137-195 202-258 (416)
41 KOG1439 RAB proteins geranylge 98.2 6.9E-06 1.5E-10 77.4 8.2 163 25-190 118-285 (440)
42 COG2081 Predicted flavoprotein 97.9 4.7E-05 1E-09 72.4 9.0 62 128-192 103-165 (408)
43 TIGR01373 soxB sarcosine oxida 97.9 0.002 4.4E-08 63.7 21.1 197 137-373 184-384 (407)
44 TIGR03329 Phn_aa_oxid putative 97.8 0.00087 1.9E-08 67.5 16.4 55 137-195 184-238 (460)
45 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.0016 3.4E-08 63.9 17.5 56 136-195 135-191 (381)
46 TIGR01377 soxA_mon sarcosine o 97.7 0.0096 2.1E-07 58.2 22.4 56 137-195 146-201 (380)
47 TIGR02032 GG-red-SF geranylger 97.6 0.0082 1.8E-07 56.2 18.6 55 137-194 92-148 (295)
48 PRK10015 oxidoreductase; Provi 97.5 0.016 3.5E-07 57.8 20.1 55 138-194 110-164 (429)
49 PRK12409 D-amino acid dehydrog 97.5 0.015 3.2E-07 57.6 19.7 58 136-195 197-259 (410)
50 COG0644 FixC Dehydrogenases (f 97.5 0.032 6.8E-07 55.0 21.7 57 138-195 97-153 (396)
51 KOG4405 GDP dissociation inhib 97.4 0.0013 2.8E-08 62.5 10.7 152 33-189 184-340 (547)
52 PRK11259 solA N-methyltryptoph 97.4 0.029 6.3E-07 54.7 20.9 56 137-195 150-205 (376)
53 KOG2820 FAD-dependent oxidored 97.4 0.016 3.4E-07 54.1 16.8 63 138-201 155-218 (399)
54 PLN02697 lycopene epsilon cycl 97.4 0.1 2.2E-06 53.2 24.4 55 137-194 193-248 (529)
55 PRK10157 putative oxidoreducta 97.4 0.0092 2E-07 59.5 16.8 55 138-194 110-164 (428)
56 COG0665 DadA Glycine/D-amino a 97.1 0.067 1.4E-06 52.3 19.6 57 137-196 157-214 (387)
57 PRK06847 hypothetical protein; 97.1 0.062 1.3E-06 52.4 18.9 56 137-195 108-164 (375)
58 PRK08773 2-octaprenyl-3-methyl 97.0 0.046 1E-06 53.7 17.6 55 137-194 114-169 (392)
59 PRK07190 hypothetical protein; 97.0 0.15 3.2E-06 51.8 21.0 61 138-200 111-172 (487)
60 PF03486 HI0933_like: HI0933-l 97.0 0.002 4.4E-08 63.4 7.2 64 128-193 101-165 (409)
61 COG4716 Myosin-crossreactive a 97.0 0.058 1.3E-06 51.1 16.1 99 65-169 159-260 (587)
62 COG5044 MRS6 RAB proteins gera 96.9 0.0066 1.4E-07 57.2 9.5 159 24-190 118-280 (434)
63 PRK01747 mnmC bifunctional tRN 96.9 0.037 8.1E-07 58.4 16.4 55 137-195 409-464 (662)
64 PRK06185 hypothetical protein; 96.9 0.1 2.2E-06 51.6 18.6 62 137-200 109-176 (407)
65 PLN02464 glycerol-3-phosphate 96.8 0.2 4.4E-06 52.4 20.8 58 136-194 232-296 (627)
66 PRK06834 hypothetical protein; 96.7 0.11 2.5E-06 52.6 18.1 60 137-199 101-162 (488)
67 TIGR03378 glycerol3P_GlpB glyc 96.7 0.0048 1E-07 60.4 7.7 64 136-201 263-329 (419)
68 TIGR01984 UbiH 2-polyprenyl-6- 96.6 0.13 2.9E-06 50.2 17.2 61 137-200 106-169 (382)
69 TIGR03377 glycerol3P_GlpA glyc 96.6 0.11 2.3E-06 53.2 17.1 58 136-195 128-191 (516)
70 TIGR01988 Ubi-OHases Ubiquinon 96.6 0.12 2.6E-06 50.4 16.6 60 137-199 107-169 (385)
71 COG2509 Uncharacterized FAD-de 96.6 0.0068 1.5E-07 58.8 7.1 55 138-194 175-230 (486)
72 PF05834 Lycopene_cycl: Lycope 96.5 0.93 2E-05 44.3 22.1 56 136-195 87-143 (374)
73 PRK07045 putative monooxygenas 96.5 0.31 6.8E-06 47.7 19.0 61 137-198 107-170 (388)
74 TIGR01790 carotene-cycl lycope 96.5 0.95 2.1E-05 44.3 22.5 56 136-194 85-141 (388)
75 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.29 6.4E-06 48.0 18.5 62 137-200 105-169 (387)
76 PRK07333 2-octaprenyl-6-methox 96.5 0.22 4.8E-06 49.0 17.7 60 137-199 112-173 (403)
77 PRK06184 hypothetical protein; 96.4 0.48 1E-05 48.3 20.4 60 138-200 111-175 (502)
78 PRK08244 hypothetical protein; 96.3 0.45 9.7E-06 48.4 19.5 59 138-199 102-165 (493)
79 PF01494 FAD_binding_3: FAD bi 96.3 0.46 9.9E-06 45.4 18.6 62 137-200 112-179 (356)
80 PRK05714 2-octaprenyl-3-methyl 96.3 0.33 7.2E-06 47.9 17.8 61 137-200 113-175 (405)
81 PRK07494 2-octaprenyl-6-methox 96.2 0.19 4.1E-06 49.3 15.5 60 137-199 112-173 (388)
82 COG0578 GlpA Glycerol-3-phosph 96.1 1.3 2.8E-05 44.9 20.7 57 137-196 165-227 (532)
83 PRK06183 mhpA 3-(3-hydroxyphen 96.1 0.8 1.7E-05 47.1 20.1 60 138-200 115-181 (538)
84 PTZ00383 malate:quinone oxidor 96.0 0.022 4.8E-07 57.6 8.1 58 137-196 212-275 (497)
85 PRK09126 hypothetical protein; 95.9 0.48 1E-05 46.5 16.7 59 138-199 112-173 (392)
86 TIGR02485 CobZ_N-term precorri 95.9 0.035 7.6E-07 55.4 8.6 57 136-193 123-182 (432)
87 PRK06126 hypothetical protein; 95.9 1.4 2.9E-05 45.5 20.5 61 138-200 128-195 (545)
88 PLN02463 lycopene beta cyclase 95.9 2.3 4.9E-05 42.6 22.7 54 137-194 115-169 (447)
89 PRK07588 hypothetical protein; 95.8 0.69 1.5E-05 45.4 17.6 57 138-198 105-163 (391)
90 TIGR03862 flavo_PP4765 unchara 95.8 0.025 5.5E-07 54.9 7.1 63 128-195 78-142 (376)
91 TIGR00031 UDP-GALP_mutase UDP- 95.8 0.0077 1.7E-07 58.6 3.5 117 70-197 129-250 (377)
92 PRK12266 glpD glycerol-3-phosp 95.8 2.3 4.9E-05 43.5 21.5 57 136-195 155-217 (508)
93 PRK05732 2-octaprenyl-6-methox 95.8 0.81 1.8E-05 44.8 17.7 54 138-194 114-169 (395)
94 COG0579 Predicted dehydrogenas 95.7 0.038 8.3E-07 54.3 7.8 58 137-196 154-213 (429)
95 PRK08274 tricarballylate dehyd 95.7 0.042 9E-07 55.4 8.4 57 135-193 130-191 (466)
96 PRK13369 glycerol-3-phosphate 95.6 3.1 6.7E-05 42.4 22.2 56 137-195 156-216 (502)
97 PF13738 Pyr_redox_3: Pyridine 95.5 0.032 7E-07 49.1 6.2 54 137-193 83-137 (203)
98 PRK08850 2-octaprenyl-6-methox 95.5 0.93 2E-05 44.7 17.1 60 138-200 113-175 (405)
99 PRK07608 ubiquinone biosynthes 95.4 0.98 2.1E-05 44.1 17.0 59 137-199 112-173 (388)
100 PRK08294 phenol 2-monooxygenas 95.4 4.2 9E-05 42.8 22.4 62 138-200 143-217 (634)
101 PF00890 FAD_binding_2: FAD bi 95.3 0.057 1.2E-06 53.5 7.8 58 136-195 141-204 (417)
102 PRK08132 FAD-dependent oxidore 95.3 2.2 4.7E-05 44.0 19.6 60 138-200 127-192 (547)
103 PRK11728 hydroxyglutarate oxid 95.3 0.059 1.3E-06 53.0 7.8 56 136-194 149-204 (393)
104 PRK08020 ubiF 2-octaprenyl-3-m 95.3 1.2 2.5E-05 43.7 16.9 61 137-200 113-176 (391)
105 PRK07364 2-octaprenyl-6-methox 95.3 0.94 2E-05 44.8 16.4 60 137-199 122-187 (415)
106 KOG2844 Dimethylglycine dehydr 95.2 0.87 1.9E-05 46.7 15.4 57 136-194 187-243 (856)
107 TIGR00275 flavoprotein, HI0933 95.2 0.082 1.8E-06 52.2 8.5 63 129-194 98-160 (400)
108 PRK11101 glpA sn-glycerol-3-ph 95.0 0.094 2E-06 54.0 8.5 56 137-194 150-211 (546)
109 PRK06134 putative FAD-binding 95.0 0.083 1.8E-06 54.8 8.1 57 136-194 217-278 (581)
110 PRK08243 4-hydroxybenzoate 3-m 94.7 4.7 0.0001 39.5 20.6 62 137-200 104-170 (392)
111 PRK12843 putative FAD-binding 94.7 0.2 4.3E-06 52.0 10.0 58 136-195 221-283 (578)
112 PRK12845 3-ketosteroid-delta-1 94.6 0.12 2.5E-06 53.4 8.1 60 131-194 214-278 (564)
113 TIGR01816 sdhA_forward succina 94.6 0.15 3.3E-06 52.7 8.9 58 135-194 118-181 (565)
114 PRK12844 3-ketosteroid-delta-1 94.6 0.13 2.8E-06 53.1 8.3 58 136-195 208-270 (557)
115 PRK12835 3-ketosteroid-delta-1 94.6 0.12 2.6E-06 53.7 8.0 58 136-194 213-275 (584)
116 TIGR01320 mal_quin_oxido malat 94.5 0.16 3.4E-06 51.5 8.4 58 136-195 178-241 (483)
117 PRK07121 hypothetical protein; 94.4 0.14 3.1E-06 52.0 8.1 59 135-194 176-239 (492)
118 PRK08013 oxidoreductase; Provi 94.4 3.4 7.4E-05 40.7 17.6 61 137-200 112-175 (400)
119 PRK11445 putative oxidoreducta 94.4 5.2 0.00011 38.6 22.3 50 147-199 109-163 (351)
120 TIGR01813 flavo_cyto_c flavocy 94.4 0.14 3E-06 51.3 7.7 59 136-195 130-193 (439)
121 PRK04176 ribulose-1,5-biphosph 94.4 0.15 3.2E-06 47.0 7.4 58 136-194 104-173 (257)
122 PRK05329 anaerobic glycerol-3- 94.2 0.19 4.2E-06 49.7 8.2 55 137-193 260-317 (422)
123 PRK06996 hypothetical protein; 94.2 4.5 9.8E-05 39.8 18.0 61 137-200 116-182 (398)
124 PRK05257 malate:quinone oxidor 94.0 0.2 4.4E-06 50.8 8.1 57 137-195 184-247 (494)
125 PLN02985 squalene monooxygenas 94.0 8.3 0.00018 39.4 20.9 61 137-200 148-215 (514)
126 PRK06481 fumarate reductase fl 93.9 0.18 3.9E-06 51.5 7.6 56 137-194 191-251 (506)
127 PRK05675 sdhA succinate dehydr 93.9 0.26 5.6E-06 51.1 8.8 59 135-194 125-189 (570)
128 PRK06175 L-aspartate oxidase; 93.9 0.25 5.4E-06 49.3 8.4 57 135-193 127-188 (433)
129 PRK09078 sdhA succinate dehydr 93.8 0.27 5.9E-06 51.2 8.8 59 135-194 148-212 (598)
130 PRK07843 3-ketosteroid-delta-1 93.8 0.22 4.7E-06 51.5 8.0 59 135-195 207-270 (557)
131 PRK08401 L-aspartate oxidase; 93.7 0.23 4.9E-06 50.1 7.8 57 136-195 120-176 (466)
132 PRK08958 sdhA succinate dehydr 93.5 0.32 7E-06 50.5 8.8 59 135-194 142-206 (588)
133 PRK06617 2-octaprenyl-6-methox 93.5 8 0.00017 37.6 18.8 61 137-200 105-167 (374)
134 COG1252 Ndh NADH dehydrogenase 93.3 0.2 4.2E-06 49.0 6.2 55 134-194 207-262 (405)
135 PRK12842 putative succinate de 93.2 0.32 6.8E-06 50.5 8.1 57 136-194 214-275 (574)
136 PF00732 GMC_oxred_N: GMC oxid 93.2 0.35 7.7E-06 45.4 7.8 64 141-204 198-268 (296)
137 PRK06116 glutathione reductase 93.1 0.33 7.2E-06 48.7 8.0 57 135-193 207-264 (450)
138 PRK12839 hypothetical protein; 93.1 0.31 6.6E-06 50.5 7.8 58 136-194 214-276 (572)
139 TIGR01812 sdhA_frdA_Gneg succi 93.1 0.4 8.7E-06 49.7 8.7 58 135-194 128-191 (566)
140 PRK07573 sdhA succinate dehydr 92.9 0.37 8E-06 50.6 8.1 53 140-194 174-232 (640)
141 PF06039 Mqo: Malate:quinone o 92.9 0.43 9.4E-06 47.0 7.9 60 137-198 182-248 (488)
142 PRK09564 coenzyme A disulfide 92.9 0.34 7.4E-06 48.5 7.6 63 135-200 190-252 (444)
143 PRK05945 sdhA succinate dehydr 92.9 0.47 1E-05 49.3 8.8 58 135-194 134-197 (575)
144 PRK06753 hypothetical protein; 92.8 7.9 0.00017 37.5 17.0 58 138-200 100-159 (373)
145 TIGR00292 thiazole biosynthesi 92.8 0.5 1.1E-05 43.5 7.9 58 137-194 101-170 (254)
146 TIGR01811 sdhA_Bsu succinate d 92.7 0.49 1.1E-05 49.4 8.7 58 135-193 128-195 (603)
147 TIGR02023 BchP-ChlP geranylger 92.7 11 0.00023 37.0 23.8 39 338-376 263-303 (388)
148 PRK06452 sdhA succinate dehydr 92.6 0.43 9.3E-06 49.4 8.1 57 136-194 136-198 (566)
149 PF01134 GIDA: Glucose inhibit 92.3 0.55 1.2E-05 45.7 7.8 53 137-192 96-150 (392)
150 PF00070 Pyr_redox: Pyridine n 92.3 0.53 1.2E-05 34.6 6.2 41 133-176 37-77 (80)
151 PRK07538 hypothetical protein; 92.2 12 0.00027 36.9 17.7 62 138-200 104-172 (413)
152 TIGR03364 HpnW_proposed FAD de 92.1 0.37 8E-06 46.8 6.6 52 137-195 146-198 (365)
153 TIGR00551 nadB L-aspartate oxi 92.1 0.39 8.4E-06 48.8 6.9 58 136-195 128-190 (488)
154 PRK07057 sdhA succinate dehydr 92.1 0.68 1.5E-05 48.2 8.8 59 135-194 147-211 (591)
155 PRK13339 malate:quinone oxidor 91.9 0.53 1.2E-05 47.7 7.6 57 137-195 185-248 (497)
156 PRK12834 putative FAD-binding 91.9 0.53 1.1E-05 48.6 7.8 56 137-194 149-227 (549)
157 PRK07512 L-aspartate oxidase; 91.9 0.41 8.8E-06 48.9 6.9 58 135-194 135-197 (513)
158 PRK08275 putative oxidoreducta 91.9 0.62 1.4E-05 48.1 8.3 58 136-194 137-200 (554)
159 PF13454 NAD_binding_9: FAD-NA 91.9 0.59 1.3E-05 39.4 6.8 42 149-192 113-155 (156)
160 PLN00128 Succinate dehydrogena 91.8 0.68 1.5E-05 48.6 8.5 58 136-194 187-250 (635)
161 PLN02507 glutathione reductase 91.8 0.65 1.4E-05 47.3 8.1 57 134-193 242-299 (499)
162 PRK04965 NADH:flavorubredoxin 91.8 0.59 1.3E-05 45.7 7.6 56 136-194 183-239 (377)
163 PRK06416 dihydrolipoamide dehy 91.8 0.66 1.4E-05 46.7 8.2 56 136-194 213-272 (462)
164 PRK06263 sdhA succinate dehydr 91.7 0.54 1.2E-05 48.4 7.6 58 136-194 134-197 (543)
165 PTZ00139 Succinate dehydrogena 91.7 0.6 1.3E-05 48.9 7.9 58 136-194 166-229 (617)
166 PRK12837 3-ketosteroid-delta-1 91.5 0.69 1.5E-05 47.3 8.0 57 136-194 173-235 (513)
167 KOG1336 Monodehydroascorbate/f 91.5 0.45 9.8E-06 46.8 6.2 64 136-200 255-319 (478)
168 PLN02927 antheraxanthin epoxid 91.4 11 0.00024 39.8 16.6 45 152-199 208-254 (668)
169 PRK07251 pyridine nucleotide-d 91.4 0.83 1.8E-05 45.6 8.4 55 136-193 198-252 (438)
170 TIGR01989 COQ6 Ubiquinone bios 91.3 17 0.00036 36.3 18.7 63 137-200 118-190 (437)
171 TIGR01350 lipoamide_DH dihydro 91.3 0.85 1.8E-05 45.9 8.4 56 136-194 211-269 (461)
172 PRK05249 soluble pyridine nucl 91.3 0.7 1.5E-05 46.5 7.7 57 135-194 215-272 (461)
173 TIGR01424 gluta_reduc_2 glutat 91.1 0.82 1.8E-05 45.8 7.9 57 134-193 205-262 (446)
174 PRK08626 fumarate reductase fl 91.0 0.88 1.9E-05 48.0 8.4 57 136-194 158-220 (657)
175 PRK14694 putative mercuric red 91.0 0.82 1.8E-05 46.1 7.9 56 136-194 218-273 (468)
176 TIGR01421 gluta_reduc_1 glutat 91.0 0.94 2E-05 45.5 8.3 59 134-194 205-265 (450)
177 TIGR01423 trypano_reduc trypan 91.0 0.86 1.9E-05 46.2 8.0 58 134-193 229-287 (486)
178 PRK08205 sdhA succinate dehydr 90.9 0.93 2E-05 47.1 8.3 59 136-194 140-206 (583)
179 PRK07395 L-aspartate oxidase; 90.8 0.6 1.3E-05 48.2 6.8 58 136-193 134-196 (553)
180 PRK08010 pyridine nucleotide-d 90.8 0.77 1.7E-05 45.9 7.5 55 136-193 199-253 (441)
181 PRK14989 nitrite reductase sub 90.6 0.89 1.9E-05 49.3 8.1 63 136-199 187-250 (847)
182 PRK09754 phenylpropionate diox 90.6 1 2.2E-05 44.4 7.9 59 137-199 187-246 (396)
183 PRK07804 L-aspartate oxidase; 90.5 0.77 1.7E-05 47.3 7.3 58 136-194 144-210 (541)
184 PRK07845 flavoprotein disulfid 90.5 0.87 1.9E-05 45.9 7.5 55 136-193 218-273 (466)
185 PRK14727 putative mercuric red 90.2 0.97 2.1E-05 45.8 7.7 56 136-194 228-283 (479)
186 PLN00093 geranylgeranyl diphos 90.0 23 0.00049 35.6 23.2 39 338-376 308-348 (450)
187 TIGR01292 TRX_reduct thioredox 89.7 1.1 2.5E-05 41.8 7.2 53 137-193 58-111 (300)
188 PRK06854 adenylylsulfate reduc 89.7 1.3 2.7E-05 46.4 8.1 56 137-194 133-195 (608)
189 PRK08071 L-aspartate oxidase; 89.2 0.8 1.7E-05 46.8 6.2 56 136-194 130-190 (510)
190 PRK07818 dihydrolipoamide dehy 89.2 1.5 3.3E-05 44.1 8.2 55 136-193 213-272 (466)
191 PRK13748 putative mercuric red 88.9 1.3 2.9E-05 45.7 7.6 56 136-194 310-365 (561)
192 TIGR03385 CoA_CoA_reduc CoA-di 88.8 1.2 2.6E-05 44.3 7.1 60 136-199 179-238 (427)
193 PRK06327 dihydrolipoamide dehy 88.7 1.6 3.5E-05 44.1 7.9 55 136-193 224-283 (475)
194 PRK06069 sdhA succinate dehydr 88.7 1.8 4E-05 44.9 8.5 57 136-194 137-200 (577)
195 PRK08163 salicylate hydroxylas 88.6 1.5 3.3E-05 42.9 7.6 55 138-195 111-167 (396)
196 PRK07803 sdhA succinate dehydr 88.6 1.6 3.4E-05 45.8 8.0 56 136-193 138-212 (626)
197 TIGR03140 AhpF alkyl hydropero 88.6 1.5 3.2E-05 44.9 7.6 55 136-193 267-322 (515)
198 PRK09897 hypothetical protein; 88.4 1.6 3.5E-05 44.7 7.6 52 138-192 109-164 (534)
199 PTZ00318 NADH dehydrogenase-li 88.3 1.2 2.6E-05 44.3 6.7 53 134-192 226-278 (424)
200 PTZ00052 thioredoxin reductase 88.3 1.8 3.8E-05 44.1 7.9 58 135-195 221-279 (499)
201 TIGR01810 betA choline dehydro 88.2 1.1 2.3E-05 46.1 6.3 52 148-201 206-262 (532)
202 PRK06912 acoL dihydrolipoamide 88.1 1.9 4E-05 43.4 7.9 55 136-193 211-267 (458)
203 TIGR02374 nitri_red_nirB nitri 87.7 1.7 3.6E-05 47.0 7.6 55 137-194 183-238 (785)
204 PRK15317 alkyl hydroperoxide r 87.7 1.9 4.1E-05 44.1 7.8 54 137-193 267-321 (517)
205 TIGR02028 ChlP geranylgeranyl 87.4 31 0.00067 33.9 23.2 39 338-376 269-309 (398)
206 PF04820 Trp_halogenase: Trypt 87.4 2.4 5.2E-05 42.6 8.1 56 137-194 155-211 (454)
207 PTZ00058 glutathione reductase 87.3 2.2 4.8E-05 44.1 7.9 57 136-193 278-335 (561)
208 PRK06370 mercuric reductase; V 87.2 2.3 4.9E-05 42.8 7.9 57 136-193 212-270 (463)
209 TIGR02462 pyranose_ox pyranose 86.8 2 4.3E-05 44.0 7.2 51 150-200 228-285 (544)
210 TIGR01438 TGR thioredoxin and 86.8 2.5 5.5E-05 42.8 8.0 56 135-193 219-278 (484)
211 TIGR02053 MerA mercuric reduct 86.7 2.5 5.4E-05 42.6 7.9 55 136-193 207-265 (463)
212 PRK05976 dihydrolipoamide dehy 86.7 2.6 5.7E-05 42.5 8.0 58 136-194 221-281 (472)
213 PTZ00306 NADH-dependent fumara 86.5 1.9 4E-05 48.8 7.4 58 137-194 545-620 (1167)
214 PRK04965 NADH:flavorubredoxin 86.2 2 4.4E-05 41.9 6.8 45 144-193 66-110 (377)
215 PLN02172 flavin-containing mon 86.2 2.5 5.4E-05 42.5 7.5 56 137-195 112-174 (461)
216 PRK06115 dihydrolipoamide dehy 85.9 3.3 7.1E-05 41.8 8.3 58 134-193 213-275 (466)
217 KOG1335 Dihydrolipoamide dehyd 85.8 3.1 6.8E-05 40.0 7.3 60 132-193 248-313 (506)
218 KOG1346 Programmed cell death 85.5 0.98 2.1E-05 43.7 3.9 69 131-202 384-457 (659)
219 TIGR01176 fum_red_Fp fumarate 85.5 3.9 8.4E-05 42.5 8.7 58 135-194 131-195 (580)
220 PRK09231 fumarate reductase fl 85.2 3.2 6.8E-05 43.2 7.9 57 136-194 133-196 (582)
221 PLN02815 L-aspartate oxidase 85.2 2.7 5.8E-05 43.8 7.3 59 136-194 155-222 (594)
222 COG1249 Lpd Pyruvate/2-oxoglut 85.0 3.5 7.5E-05 41.3 7.7 57 133-192 211-270 (454)
223 PRK08641 sdhA succinate dehydr 84.7 3.4 7.5E-05 43.0 7.9 58 136-194 133-200 (589)
224 KOG0404 Thioredoxin reductase 84.7 1.9 4.2E-05 38.2 5.0 70 128-201 62-131 (322)
225 KOG2404 Fumarate reductase, fl 84.6 1.8 3.9E-05 40.6 5.0 56 138-195 141-207 (477)
226 PLN02546 glutathione reductase 84.4 4 8.7E-05 42.1 8.2 59 134-194 291-350 (558)
227 COG2509 Uncharacterized FAD-de 84.3 2.2 4.7E-05 42.0 5.7 40 334-376 445-484 (486)
228 TIGR00136 gidA glucose-inhibit 84.0 3.3 7.1E-05 42.9 7.2 56 137-194 97-154 (617)
229 PRK10262 thioredoxin reductase 83.7 2.3 5E-05 40.4 5.8 55 138-194 187-248 (321)
230 COG0492 TrxB Thioredoxin reduc 83.1 4.2 9.1E-05 38.5 7.1 58 134-195 59-116 (305)
231 TIGR03169 Nterm_to_SelD pyridi 83.0 3.4 7.5E-05 40.0 6.8 52 136-194 191-243 (364)
232 TIGR01316 gltA glutamate synth 83.0 3.7 8.1E-05 41.2 7.2 33 143-176 316-348 (449)
233 KOG2852 Possible oxidoreductas 83.0 28 0.00062 32.4 11.8 62 136-201 147-214 (380)
234 PRK09077 L-aspartate oxidase; 82.7 5.1 0.00011 41.3 8.1 60 135-194 137-207 (536)
235 PRK07846 mycothione reductase; 82.3 4.3 9.4E-05 40.7 7.3 57 136-196 207-264 (451)
236 TIGR02374 nitri_red_nirB nitri 81.9 2.9 6.2E-05 45.2 6.2 47 143-193 61-107 (785)
237 PRK09754 phenylpropionate diox 81.7 3.2 6.9E-05 40.8 6.0 45 146-194 68-112 (396)
238 PLN02661 Putative thiazole syn 81.1 6.3 0.00014 38.0 7.5 52 138-191 174-241 (357)
239 PRK02106 choline dehydrogenase 81.1 2.4 5.1E-05 43.9 5.1 52 148-201 213-269 (560)
240 TIGR02061 aprA adenosine phosp 81.1 6.8 0.00015 40.9 8.4 58 137-194 127-191 (614)
241 PRK12810 gltD glutamate syntha 80.6 3.8 8.2E-05 41.4 6.2 38 336-376 428-465 (471)
242 PF12831 FAD_oxidored: FAD dep 80.5 0.52 1.1E-05 47.0 0.0 56 144-201 98-157 (428)
243 PRK11749 dihydropyrimidine deh 80.4 5.2 0.00011 40.2 7.2 38 336-376 415-452 (457)
244 PRK05192 tRNA uridine 5-carbox 80.0 5.8 0.00013 41.2 7.3 54 138-194 102-157 (618)
245 COG3075 GlpB Anaerobic glycero 79.9 2.5 5.5E-05 39.8 4.2 63 137-201 259-324 (421)
246 PF13434 K_oxygenase: L-lysine 79.7 3.5 7.7E-05 39.7 5.4 59 132-192 269-339 (341)
247 PRK05335 tRNA (uracil-5-)-meth 79.4 9.7 0.00021 37.7 8.3 77 292-376 287-364 (436)
248 TIGR01318 gltD_gamma_fam gluta 79.2 6.9 0.00015 39.5 7.6 38 336-376 429-466 (467)
249 TIGR03452 mycothione_red mycot 78.7 7.3 0.00016 39.1 7.5 55 136-194 210-265 (452)
250 PRK09564 coenzyme A disulfide 78.7 4 8.7E-05 40.7 5.7 49 142-193 62-114 (444)
251 PRK13512 coenzyme A disulfide 78.6 5.3 0.00011 39.9 6.5 54 135-194 188-241 (438)
252 TIGR03219 salicylate_mono sali 78.5 5.4 0.00012 39.4 6.5 58 137-199 106-165 (414)
253 KOG0405 Pyridine nucleotide-di 78.5 5.6 0.00012 37.9 6.0 60 133-193 227-286 (478)
254 PRK08849 2-octaprenyl-3-methyl 78.5 6.8 0.00015 38.3 7.2 59 138-199 112-173 (384)
255 TIGR00136 gidA glucose-inhibit 78.1 9.3 0.0002 39.7 8.0 91 292-396 315-408 (617)
256 COG0446 HcaD Uncharacterized N 78.0 6 0.00013 38.7 6.7 56 137-194 179-237 (415)
257 PRK12831 putative oxidoreducta 77.8 6.7 0.00015 39.5 7.0 38 336-376 424-461 (464)
258 COG1635 THI4 Ribulose 1,5-bisp 77.1 8.9 0.00019 34.2 6.5 56 138-194 111-178 (262)
259 TIGR03169 Nterm_to_SelD pyridi 77.0 3.8 8.2E-05 39.7 4.8 52 138-195 56-108 (364)
260 PRK07236 hypothetical protein; 76.2 7.3 0.00016 38.1 6.6 53 138-195 102-155 (386)
261 PRK12769 putative oxidoreducta 75.9 8.6 0.00019 40.7 7.4 38 336-376 615-652 (654)
262 TIGR03140 AhpF alkyl hydropero 75.2 7.7 0.00017 39.7 6.7 51 142-194 393-450 (515)
263 PF07992 Pyr_redox_2: Pyridine 73.5 5.2 0.00011 34.7 4.4 51 141-193 63-121 (201)
264 PRK05868 hypothetical protein; 73.5 9.1 0.0002 37.3 6.5 50 148-200 116-167 (372)
265 PF00743 FMO-like: Flavin-bind 72.5 13 0.00028 38.2 7.5 59 137-196 85-152 (531)
266 PF01134 GIDA: Glucose inhibit 72.1 6.5 0.00014 38.4 5.0 75 292-376 313-389 (392)
267 TIGR03385 CoA_CoA_reduc CoA-di 71.9 9.5 0.00021 37.9 6.3 45 146-193 54-102 (427)
268 PF01946 Thi4: Thi4 family; PD 71.8 16 0.00034 32.6 6.8 57 137-194 97-165 (230)
269 TIGR01292 TRX_reduct thioredox 71.7 11 0.00025 34.9 6.6 52 139-193 179-237 (300)
270 PRK05192 tRNA uridine 5-carbox 71.7 20 0.00043 37.3 8.6 90 292-396 317-409 (618)
271 PRK12831 putative oxidoreducta 71.6 6.1 0.00013 39.8 4.9 45 138-193 193-239 (464)
272 PF13434 K_oxygenase: L-lysine 71.5 7.6 0.00016 37.4 5.3 43 150-192 109-157 (341)
273 PRK14989 nitrite reductase sub 71.3 8.2 0.00018 42.0 6.1 46 143-193 66-112 (847)
274 COG0445 GidA Flavin-dependent 71.3 7.2 0.00016 39.5 5.1 56 140-197 104-161 (621)
275 COG2072 TrkA Predicted flavopr 71.3 14 0.0003 37.0 7.3 58 138-196 84-146 (443)
276 PRK12769 putative oxidoreducta 70.6 6.2 0.00013 41.7 4.8 14 182-195 412-425 (654)
277 PRK06467 dihydrolipoamide dehy 70.6 17 0.00037 36.7 7.8 56 135-194 214-274 (471)
278 COG1251 NirB NAD(P)H-nitrite r 70.4 4.7 0.0001 42.1 3.7 51 141-194 192-243 (793)
279 PTZ00367 squalene epoxidase; P 70.2 1.4E+02 0.0031 31.0 18.4 36 338-373 336-373 (567)
280 PRK06475 salicylate hydroxylas 69.8 18 0.00038 35.6 7.7 60 137-199 108-173 (400)
281 TIGR01316 gltA glutamate synth 69.7 7.1 0.00015 39.2 4.8 39 334-375 411-449 (449)
282 TIGR00292 thiazole biosynthesi 69.3 6.3 0.00014 36.2 4.1 40 337-376 211-254 (254)
283 TIGR03143 AhpF_homolog putativ 69.2 15 0.00033 38.0 7.3 53 137-193 61-113 (555)
284 TIGR00137 gid_trmFO tRNA:m(5)U 68.9 17 0.00037 36.2 7.1 77 292-376 286-363 (433)
285 PRK12810 gltD glutamate syntha 68.3 8 0.00017 39.0 5.0 45 138-193 195-239 (471)
286 TIGR01318 gltD_gamma_fam gluta 67.9 9.2 0.0002 38.6 5.3 47 138-195 193-239 (467)
287 PRK04176 ribulose-1,5-biphosph 67.8 6.7 0.00014 36.1 3.9 40 337-376 212-255 (257)
288 PRK13512 coenzyme A disulfide 67.2 14 0.00031 36.8 6.5 45 147-194 69-117 (438)
289 PRK13800 putative oxidoreducta 67.0 19 0.00041 39.6 7.8 57 136-194 139-205 (897)
290 TIGR03862 flavo_PP4765 unchara 66.8 7.6 0.00017 37.9 4.2 39 336-375 334-375 (376)
291 PRK12809 putative oxidoreducta 66.7 16 0.00034 38.6 6.9 38 336-376 598-635 (639)
292 PRK06292 dihydrolipoamide dehy 66.6 22 0.00048 35.6 7.8 55 136-193 210-267 (460)
293 PRK12778 putative bifunctional 66.4 16 0.00035 39.3 7.0 38 336-376 713-750 (752)
294 COG3486 IucD Lysine/ornithine 65.5 18 0.00039 35.3 6.3 59 133-193 268-339 (436)
295 COG1635 THI4 Ribulose 1,5-bisp 65.4 6.5 0.00014 35.0 3.0 40 337-376 217-260 (262)
296 PRK15317 alkyl hydroperoxide r 64.4 16 0.00034 37.5 6.2 51 141-193 391-448 (517)
297 PRK12770 putative glutamate sy 64.3 12 0.00026 36.1 5.1 39 335-376 312-350 (352)
298 PRK10262 thioredoxin reductase 64.3 25 0.00055 33.2 7.3 54 137-194 64-117 (321)
299 KOG1336 Monodehydroascorbate/f 62.6 14 0.0003 36.7 5.0 51 138-192 129-179 (478)
300 TIGR01372 soxA sarcosine oxida 62.4 26 0.00055 39.1 7.8 58 138-198 353-415 (985)
301 PRK13984 putative oxidoreducta 62.2 20 0.00043 37.5 6.7 37 336-376 566-602 (604)
302 PTZ00153 lipoamide dehydrogena 62.1 31 0.00067 36.5 7.9 57 136-194 353-427 (659)
303 COG1251 NirB NAD(P)H-nitrite r 62.0 11 0.00023 39.6 4.4 53 138-195 61-114 (793)
304 PRK12770 putative glutamate sy 62.0 24 0.00052 34.0 6.8 51 140-193 214-285 (352)
305 KOG2415 Electron transfer flav 61.9 15 0.00034 35.9 5.1 62 138-200 185-264 (621)
306 PRK12775 putative trifunctiona 61.8 14 0.0003 41.2 5.5 41 334-377 716-756 (1006)
307 PLN02661 Putative thiazole syn 61.4 11 0.00024 36.4 4.1 40 337-376 285-328 (357)
308 PRK12809 putative oxidoreducta 60.7 12 0.00026 39.5 4.7 15 181-195 394-408 (639)
309 PRK11749 dihydropyrimidine deh 60.6 12 0.00026 37.6 4.5 46 137-193 191-236 (457)
310 TIGR01317 GOGAT_sm_gam glutama 60.2 13 0.00027 37.8 4.6 39 335-376 441-479 (485)
311 COG0029 NadB Aspartate oxidase 59.8 26 0.00056 35.1 6.4 62 130-192 127-194 (518)
312 COG0445 GidA Flavin-dependent 59.2 12 0.00026 37.9 4.1 68 291-368 316-385 (621)
313 PRK12779 putative bifunctional 58.8 12 0.00026 41.3 4.5 40 335-377 589-628 (944)
314 PRK12771 putative glutamate sy 58.3 14 0.0003 38.3 4.6 39 335-376 406-444 (564)
315 PRK12775 putative trifunctiona 58.1 27 0.00059 38.9 7.0 49 144-193 617-685 (1006)
316 TIGR01424 gluta_reduc_2 glutat 57.7 25 0.00055 35.1 6.3 37 334-373 289-325 (446)
317 COG2303 BetA Choline dehydroge 57.5 20 0.00042 37.0 5.5 52 147-200 214-272 (542)
318 TIGR03315 Se_ygfK putative sel 57.1 17 0.00036 40.3 5.1 40 335-377 802-841 (1012)
319 PLN02852 ferredoxin-NADP+ redu 56.8 13 0.00029 37.6 4.1 42 335-378 383-424 (491)
320 PRK12778 putative bifunctional 56.7 17 0.00036 39.2 5.0 45 138-193 483-528 (752)
321 PRK13984 putative oxidoreducta 56.6 17 0.00036 38.0 5.0 46 138-194 335-380 (604)
322 PLN02785 Protein HOTHEAD 55.9 27 0.00058 36.4 6.2 61 140-200 224-296 (587)
323 PRK12814 putative NADPH-depend 55.3 17 0.00038 38.4 4.8 39 335-376 463-501 (652)
324 COG0562 Glf UDP-galactopyranos 54.4 9.7 0.00021 35.9 2.4 114 68-198 130-245 (374)
325 TIGR01816 sdhA_forward succina 54.2 17 0.00036 37.8 4.4 41 336-376 351-397 (565)
326 PRK09853 putative selenate red 54.2 19 0.00042 39.8 5.0 40 335-377 804-843 (1019)
327 PTZ00318 NADH dehydrogenase-li 53.8 32 0.00069 34.2 6.2 41 336-376 306-348 (424)
328 PRK12771 putative glutamate sy 53.5 41 0.00088 34.9 7.1 47 146-194 315-380 (564)
329 TIGR03143 AhpF_homolog putativ 53.1 15 0.00032 38.0 3.8 40 335-376 270-309 (555)
330 TIGR02360 pbenz_hydroxyl 4-hyd 52.8 43 0.00092 32.8 6.9 62 137-200 104-170 (390)
331 PF08491 SE: Squalene epoxidas 52.5 64 0.0014 29.9 7.4 39 336-374 127-167 (276)
332 TIGR01372 soxA sarcosine oxida 50.2 23 0.00049 39.5 4.9 38 336-377 436-473 (985)
333 PRK09078 sdhA succinate dehydr 50.2 21 0.00045 37.3 4.4 41 336-376 383-429 (598)
334 PRK12844 3-ketosteroid-delta-1 50.1 23 0.0005 36.6 4.7 42 336-377 505-552 (557)
335 PRK06452 sdhA succinate dehydr 50.1 25 0.00053 36.5 4.9 42 335-376 356-404 (566)
336 COG1206 Gid NAD(FAD)-utilizing 49.4 30 0.00065 32.9 4.7 68 294-369 293-361 (439)
337 PRK07845 flavoprotein disulfid 49.2 45 0.00098 33.6 6.5 37 334-373 300-336 (466)
338 TIGR01421 gluta_reduc_1 glutat 49.1 26 0.00057 35.1 4.8 37 334-373 291-327 (450)
339 PRK06116 glutathione reductase 49.0 26 0.00056 35.1 4.7 36 335-373 292-327 (450)
340 PLN00128 Succinate dehydrogena 47.0 26 0.00057 36.9 4.5 41 336-376 421-467 (635)
341 PRK08205 sdhA succinate dehydr 46.7 26 0.00057 36.5 4.5 40 336-375 373-418 (583)
342 PF03486 HI0933_like: HI0933-l 46.0 21 0.00046 35.3 3.5 33 336-369 373-408 (409)
343 PRK09231 fumarate reductase fl 45.4 29 0.00062 36.2 4.5 43 334-376 367-415 (582)
344 PRK06175 L-aspartate oxidase; 45.1 64 0.0014 32.2 6.8 43 334-376 340-388 (433)
345 TIGR00551 nadB L-aspartate oxi 44.6 31 0.00067 35.0 4.5 43 333-375 341-389 (488)
346 PRK06263 sdhA succinate dehydr 44.0 30 0.00064 35.7 4.3 42 334-375 357-403 (543)
347 COG0492 TrxB Thioredoxin reduc 43.3 25 0.00054 33.3 3.4 41 334-376 261-301 (305)
348 PRK12839 hypothetical protein; 42.8 27 0.00058 36.3 3.8 41 336-376 523-569 (572)
349 PRK12779 putative bifunctional 42.5 76 0.0017 35.2 7.4 47 147-193 495-561 (944)
350 PTZ00139 Succinate dehydrogena 42.5 30 0.00064 36.4 4.1 40 336-375 400-445 (617)
351 PRK07121 hypothetical protein; 42.3 29 0.00062 35.2 3.9 39 336-374 447-490 (492)
352 PRK06134 putative FAD-binding 42.0 27 0.00058 36.4 3.7 41 336-376 526-572 (581)
353 PRK08275 putative oxidoreducta 42.0 33 0.00072 35.5 4.3 42 333-376 364-405 (554)
354 TIGR01812 sdhA_frdA_Gneg succi 41.9 38 0.00082 35.1 4.8 41 336-376 357-403 (566)
355 PRK05249 soluble pyridine nucl 41.3 34 0.00075 34.3 4.3 36 335-373 299-334 (461)
356 PRK08958 sdhA succinate dehydr 41.0 36 0.00077 35.5 4.4 41 336-376 378-424 (588)
357 PRK14727 putative mercuric red 40.5 34 0.00074 34.6 4.1 38 334-374 309-346 (479)
358 PRK12842 putative succinate de 40.5 35 0.00076 35.5 4.2 40 336-376 522-568 (574)
359 PRK09077 L-aspartate oxidase; 40.0 44 0.00095 34.4 4.9 42 334-375 362-409 (536)
360 PRK07803 sdhA succinate dehydr 40.0 33 0.00071 36.1 4.0 42 335-376 402-448 (626)
361 TIGR01423 trypano_reduc trypan 39.4 45 0.00097 33.9 4.7 37 334-373 314-350 (486)
362 PRK08274 tricarballylate dehyd 38.9 32 0.0007 34.5 3.7 41 336-376 416-462 (466)
363 COG3573 Predicted oxidoreducta 38.7 76 0.0016 30.3 5.6 53 137-191 150-225 (552)
364 PRK12835 3-ketosteroid-delta-1 38.0 39 0.00084 35.2 4.1 41 336-376 525-571 (584)
365 TIGR01789 lycopene_cycl lycope 37.9 61 0.0013 31.6 5.3 47 138-193 91-137 (370)
366 PRK13748 putative mercuric red 37.6 40 0.00087 34.8 4.2 37 334-373 391-427 (561)
367 TIGR01317 GOGAT_sm_gam glutama 37.6 82 0.0018 32.0 6.3 43 149-192 349-412 (485)
368 PRK05675 sdhA succinate dehydr 37.5 44 0.00096 34.7 4.4 41 336-376 360-406 (570)
369 PRK06292 dihydrolipoamide dehy 37.3 40 0.00088 33.7 4.0 37 334-373 294-330 (460)
370 COG1249 Lpd Pyruvate/2-oxoglut 37.3 45 0.00098 33.5 4.3 36 335-373 299-334 (454)
371 TIGR01176 fum_red_Fp fumarate 37.2 53 0.0011 34.2 4.9 44 333-376 365-414 (580)
372 PLN02507 glutathione reductase 37.1 48 0.001 33.8 4.5 37 334-373 326-362 (499)
373 PRK14694 putative mercuric red 37.0 44 0.00096 33.6 4.3 37 334-373 298-334 (468)
374 PRK08641 sdhA succinate dehydr 36.8 53 0.0011 34.3 4.9 42 334-375 364-410 (589)
375 PRK08071 L-aspartate oxidase; 36.7 44 0.00096 34.1 4.2 42 334-375 341-388 (510)
376 KOG1399 Flavin-containing mono 36.6 85 0.0018 31.5 6.1 56 137-194 91-153 (448)
377 KOG2614 Kynurenine 3-monooxyge 36.6 3E+02 0.0064 27.2 9.4 37 340-376 289-327 (420)
378 KOG0042 Glycerol-3-phosphate d 36.5 3.1E+02 0.0066 28.3 9.6 66 128-194 215-287 (680)
379 PRK06467 dihydrolipoamide dehy 36.4 45 0.00098 33.6 4.2 38 334-374 300-337 (471)
380 TIGR01811 sdhA_Bsu succinate d 36.4 50 0.0011 34.6 4.6 42 334-375 379-425 (603)
381 PRK06069 sdhA succinate dehydr 35.8 44 0.00095 34.8 4.1 41 336-376 369-415 (577)
382 PRK07818 dihydrolipoamide dehy 35.6 50 0.0011 33.2 4.4 37 334-373 299-335 (466)
383 COG3634 AhpF Alkyl hydroperoxi 35.5 63 0.0014 31.1 4.5 57 137-193 267-324 (520)
384 PRK05329 anaerobic glycerol-3- 35.4 42 0.00091 33.4 3.7 37 336-375 378-420 (422)
385 PLN02815 L-aspartate oxidase 35.4 53 0.0012 34.3 4.6 42 334-375 386-433 (594)
386 TIGR02485 CobZ_N-term precorri 35.3 47 0.001 33.0 4.1 39 336-374 385-429 (432)
387 PRK06370 mercuric reductase; V 35.3 55 0.0012 32.8 4.7 38 334-374 297-334 (463)
388 TIGR03378 glycerol3P_GlpB glyc 35.2 30 0.00066 34.2 2.6 33 337-372 381-419 (419)
389 PRK12845 3-ketosteroid-delta-1 34.9 41 0.00088 34.9 3.7 38 336-373 520-563 (564)
390 PRK05976 dihydrolipoamide dehy 34.7 1.1E+02 0.0023 30.9 6.6 36 335-373 307-342 (472)
391 PRK07512 L-aspartate oxidase; 34.4 53 0.0011 33.6 4.4 43 334-376 350-398 (513)
392 PRK12834 putative FAD-binding 34.2 42 0.0009 34.7 3.6 37 336-373 502-548 (549)
393 PRK05945 sdhA succinate dehydr 33.6 57 0.0012 33.9 4.5 41 336-376 368-414 (575)
394 PRK06416 dihydrolipoamide dehy 33.4 56 0.0012 32.8 4.3 38 334-374 297-334 (462)
395 PRK12843 putative FAD-binding 33.4 51 0.0011 34.3 4.1 41 336-376 527-573 (578)
396 KOG2853 Possible oxidoreductas 33.2 4.6E+02 0.01 25.4 15.9 79 283-373 401-481 (509)
397 KOG4716 Thioredoxin reductase 32.8 68 0.0015 30.7 4.3 64 130-195 232-301 (503)
398 PRK07843 3-ketosteroid-delta-1 32.5 45 0.00097 34.5 3.5 38 336-373 512-555 (557)
399 PRK06327 dihydrolipoamide dehy 32.4 61 0.0013 32.7 4.4 38 334-374 310-347 (475)
400 COG0029 NadB Aspartate oxidase 32.2 87 0.0019 31.6 5.2 44 334-377 350-399 (518)
401 TIGR01350 lipoamide_DH dihydro 32.0 61 0.0013 32.4 4.4 37 335-374 296-332 (461)
402 TIGR00275 flavoprotein, HI0933 31.9 33 0.00072 33.7 2.4 32 336-368 365-399 (400)
403 TIGR02053 MerA mercuric reduct 31.5 64 0.0014 32.4 4.4 38 334-374 292-329 (463)
404 PRK06115 dihydrolipoamide dehy 31.2 56 0.0012 32.9 3.9 38 334-374 301-338 (466)
405 PRK08401 L-aspartate oxidase; 31.0 74 0.0016 32.0 4.7 41 334-374 319-365 (466)
406 PRK08626 fumarate reductase fl 30.7 84 0.0018 33.3 5.2 42 335-376 382-430 (657)
407 TIGR01438 TGR thioredoxin and 30.6 76 0.0016 32.2 4.8 38 334-373 306-343 (484)
408 PRK06481 fumarate reductase fl 30.4 55 0.0012 33.4 3.7 40 336-375 459-503 (506)
409 PRK07057 sdhA succinate dehydr 30.2 63 0.0014 33.8 4.1 40 336-375 381-426 (591)
410 PLN02546 glutathione reductase 30.1 73 0.0016 33.0 4.6 38 334-374 376-413 (558)
411 PRK06444 prephenate dehydrogen 29.9 1E+02 0.0022 27.1 4.8 20 182-201 31-50 (197)
412 COG1148 HdrA Heterodisulfide r 29.9 1.2E+02 0.0026 30.7 5.6 39 335-377 508-546 (622)
413 TIGR03452 mycothione_red mycot 29.0 72 0.0016 32.0 4.3 38 334-374 291-328 (452)
414 PRK13800 putative oxidoreducta 28.8 63 0.0014 35.7 4.0 40 334-375 370-409 (897)
415 PRK12837 3-ketosteroid-delta-1 28.6 49 0.0011 33.8 3.0 38 336-373 467-510 (513)
416 COG1053 SdhA Succinate dehydro 27.9 91 0.002 32.3 4.8 58 136-194 138-202 (562)
417 KOG2311 NAD/FAD-utilizing prot 26.9 1E+02 0.0023 31.0 4.6 45 151-196 140-188 (679)
418 PRK07846 mycothione reductase; 26.6 89 0.0019 31.3 4.4 38 334-374 288-325 (451)
419 COG1252 Ndh NADH dehydrogenase 25.4 1.2E+02 0.0026 29.9 4.9 41 336-376 289-332 (405)
420 PRK12814 putative NADPH-depend 25.3 2.2E+02 0.0047 30.2 7.2 45 147-193 372-436 (652)
421 PRK06912 acoL dihydrolipoamide 25.2 88 0.0019 31.4 4.1 36 335-373 294-329 (458)
422 PRK07804 L-aspartate oxidase; 24.7 83 0.0018 32.4 3.9 42 334-375 366-413 (541)
423 PTZ00306 NADH-dependent fumara 24.2 79 0.0017 36.0 3.9 41 336-376 858-903 (1167)
424 PTZ00052 thioredoxin reductase 23.9 1.1E+02 0.0023 31.3 4.4 38 335-374 304-341 (499)
425 PRK09853 putative selenate red 23.1 2E+02 0.0044 32.1 6.5 49 148-199 719-784 (1019)
426 COG3573 Predicted oxidoreducta 23.1 20 0.00043 34.1 -0.9 36 336-373 504-550 (552)
427 PTZ00058 glutathione reductase 22.9 1.3E+02 0.0028 31.2 4.9 41 334-374 361-432 (561)
428 COG1053 SdhA Succinate dehydro 22.7 2.3E+02 0.005 29.4 6.6 43 335-377 366-414 (562)
429 PRK07395 L-aspartate oxidase; 22.4 1E+02 0.0022 31.9 4.0 40 334-373 356-401 (553)
430 PF03807 F420_oxidored: NADP o 22.0 66 0.0014 23.9 2.0 20 182-201 61-80 (96)
431 PRK08010 pyridine nucleotide-d 21.4 1.3E+02 0.0028 30.0 4.4 37 334-373 280-316 (441)
432 KOG4716 Thioredoxin reductase 21.1 94 0.002 29.8 3.0 38 335-374 328-365 (503)
433 PRK06854 adenylylsulfate reduc 20.5 1.5E+02 0.0033 31.0 4.9 42 334-376 391-432 (608)
434 PF08437 Glyco_transf_8C: Glyc 20.4 61 0.0013 22.1 1.3 18 400-417 4-21 (57)
435 TIGR02061 aprA adenosine phosp 20.2 1.3E+02 0.0028 31.6 4.2 41 334-375 402-442 (614)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=3.2e-41 Score=339.38 Aligned_cols=350 Identities=20% Similarity=0.256 Sum_probs=275.4
Q ss_pred CCCCccccc-ccCCCCCChhhhhhhchhH------HHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHh
Q 014827 24 LPTPLGTLF-YTQFSRLPLVDRLTSLPLM------AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQV 96 (418)
Q Consensus 24 ~p~p~~~~~-~l~~~~ls~~dk~~~~~l~------~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~ 96 (418)
++.|++.+. +++++.+++.||++++..+ ..++..+...+.+..++++|+.+|+++++.+++++++||+|++.+
T Consensus 177 ~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~ 256 (569)
T PLN02487 177 VGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYA 256 (569)
T ss_pred CCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 788888777 9999999999999985321 111111111334556789999999999988888999999999999
Q ss_pred hhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCC-CC--eEEE
Q 014827 97 GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISD 173 (418)
Q Consensus 97 ~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~-~g--~v~~ 173 (418)
+++++++++|+..++.+|..+. .....+++.|++||+++.|++++++.|+++|++|+++++|++|..+++ +| ++++
T Consensus 257 ~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~g 335 (569)
T PLN02487 257 LGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTG 335 (569)
T ss_pred hhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEE
Confidence 9999999999999999886532 234456788999999767999999999999999999999999998742 13 4778
Q ss_pred EEE--C--CeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCc------ceec
Q 014827 174 VVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSG 243 (418)
Q Consensus 174 v~~--~--g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~~ 243 (418)
|++ + ++++.+|+||+|+|++.+.+|+++.. +..+.++.+..+.+.++++++|+||+++..+.+.+ .+.|
T Consensus 336 v~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~-~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g 414 (569)
T PLN02487 336 LKVSKATEKEIVKADAYVAACDVPGIKRLLPEQW-REYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAG 414 (569)
T ss_pred EEEecCCCceEEECCEEEECCCHHHHHHhCCchh-hccHHHhHHhcCCCeeEEEEEEEeccccccccccccccccccccc
Confidence 887 3 34689999999999999999998762 22345678889988999999999998876432110 1222
Q ss_pred cCC-----Ccccee-eecccccc-cc-CCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEE
Q 014827 244 FGD-----SLAWTF-FDLNKIYD-EH-KDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR 315 (418)
Q Consensus 244 ~~~-----~~~~~~-~d~s~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r 315 (418)
++. ...|.+ +|..-..+ .| .+.+++++++++++++++..+++++|++.++++|.++||...+..+.+..+.+
T Consensus 415 ~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~ 494 (569)
T PLN02487 415 LDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVK 494 (569)
T ss_pred ccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEE
Confidence 221 222322 24221111 12 22346788888888888999999999999999999999997655678888999
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 316 FPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 316 ~~~a~~~~~pg~~~~r~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+++++.+.||+...||.++|+++|||+||||+.++++ .+||||++||..||+.|++..+
T Consensus 495 ~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 495 IGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred ccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988889999999999999999887777 6999999999999999988754
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.7e-39 Score=324.66 Aligned_cols=346 Identities=19% Similarity=0.282 Sum_probs=265.6
Q ss_pred CCCCccccc-ccCCCCCChhhhhhhchhH--HHHh----hcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHh
Q 014827 24 LPTPLGTLF-YTQFSRLPLVDRLTSLPLM--AAVI----DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQV 96 (418)
Q Consensus 24 ~p~p~~~~~-~l~~~~ls~~dk~~~~~l~--~~~~----~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~ 96 (418)
+|.|++.+. +++++.+||.||++++..+ ..+. +++...+.+..++++|+.+|+++++.++.++++||+|++.+
T Consensus 101 ~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~ 180 (474)
T TIGR02732 101 TGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYA 180 (474)
T ss_pred CCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 778888777 8999999999999977633 1211 11111234556789999999999999988899999999999
Q ss_pred hhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCC-CC--eEEE
Q 014827 97 GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISD 173 (418)
Q Consensus 97 ~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~-~g--~v~~ 173 (418)
+++++++++|+..++.+++.+. ....++.+.+++||+++.+.++|++.|++.|++|++|++|++|..+++ ++ ++++
T Consensus 181 ~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~ 259 (474)
T TIGR02732 181 LGFIDCENISARCMLTIFMLFA-AKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTG 259 (474)
T ss_pred hcCCCHHHHHHHHHHHHHHHHH-hCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEE
Confidence 9999999999999999887543 344556778899998877899999999999999999999999998641 02 3666
Q ss_pred EEEC-C---eEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcc------eec
Q 014827 174 VVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA------CSG 243 (418)
Q Consensus 174 v~~~-g---~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~------~~~ 243 (418)
|.++ | +++.||+||+|+|++.+.+|+++.. ...+..+.+..+.+.++++|+|+|++++..+.+.+. +.+
T Consensus 260 v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~-~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~ 338 (474)
T TIGR02732 260 LIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEW-RQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAG 338 (474)
T ss_pred EEEecCCcceEEECCEEEECCChHHHHhhCChhh-hcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhccccccc
Confidence 6663 3 5689999999999999999998742 113355678888999999999999987654321110 111
Q ss_pred cC-----CCcccee-eecccccc-ccC-CCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEE
Q 014827 244 FG-----DSLAWTF-FDLNKIYD-EHK-DDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR 315 (418)
Q Consensus 244 ~~-----~~~~~~~-~d~s~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r 315 (418)
.+ ....|.+ +|.+...+ .|. +..+.+++++++.+.++.+++++++++.++++|+++||......+.+..+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~ 418 (474)
T TIGR02732 339 LDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVK 418 (474)
T ss_pred ccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEE
Confidence 11 1112222 23231112 232 1234567777777777888999999999999999999987655677778999
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHH
Q 014827 316 FPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 316 ~~~a~~~~~pg~~~~r~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il 372 (418)
.+++++.+.||+..++|..+|+++|||+||||+.++++ ++||||++||+.||+.|+
T Consensus 419 ~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 419 LAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEGATLSGRQAAAAIL 474 (474)
T ss_pred ecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhHHHHHHHHHHHHhC
Confidence 99999999999988899999999999999999876666 699999999999999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.7e-37 Score=316.02 Aligned_cols=349 Identities=17% Similarity=0.269 Sum_probs=269.0
Q ss_pred cCCC-CCCCccccc-cc-CCCCCChhhhhhhch-hHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Q 014827 20 DLNQ-LPTPLGTLF-YT-QFSRLPLVDRLTSLP-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQ 95 (418)
Q Consensus 20 ~~~~-~p~p~~~~~-~l-~~~~ls~~dk~~~~~-l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~ 95 (418)
.+|. +|.|++.+. ++ .++.+++.+|++++. ++..... ..+.+.++|++|+.||++++++++.+.+.+|+|++.
T Consensus 192 ~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~---~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~ 268 (567)
T PLN02612 192 DFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVG---GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSK 268 (567)
T ss_pred cCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcc---cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3454 778888766 66 468899999999765 3222111 123345689999999999999999999999999999
Q ss_pred hhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE
Q 014827 96 VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV 175 (418)
Q Consensus 96 ~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~ 175 (418)
+.++.+++++|+..++..+..++ ....++.+.++.|++.+.|+++|++.|++.|++|++|++|++|..+++ +++++|+
T Consensus 269 ~~~~~~p~~~S~~~~l~~l~~~l-~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~ 346 (567)
T PLN02612 269 ALNFINPDELSMQCILIALNRFL-QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFL 346 (567)
T ss_pred HhcCCCHHHhhHHHHHHHHHHHH-hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEE
Confidence 99999999999999998887653 444556677888886578999999999999999999999999998764 6566666
Q ss_pred E-CCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeee
Q 014827 176 C-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFD 254 (418)
Q Consensus 176 ~-~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d 254 (418)
+ +|+++.||+||+|+|++.+..|+++... +.++.+.++++.+.++++++++|+++++....+. ++... .....+++
T Consensus 347 ~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~-~~~~~-~~~~~~~d 423 (567)
T PLN02612 347 LTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHL-LFSRS-PLLSVYAD 423 (567)
T ss_pred ECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeEEEEEEECcccCCCCCce-eecCC-CCceeehh
Confidence 6 6778999999999999999988876422 2355667777888899999999999875322221 22211 11122345
Q ss_pred ccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCC-----CceeeeeeEEEcCCCccccCCCCCC
Q 014827 255 LNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS-----TATVMDHKIRRFPKSLTHFFPGSYK 329 (418)
Q Consensus 255 ~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~~~~~L~~~~p~~~-----~~~~~~~~v~r~~~a~~~~~pg~~~ 329 (418)
++...+.+.+++.+++.+++..+++|.+++++++++.++++|+++||+.. ...++...+.+.|.+.+.+.||...
T Consensus 424 ~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~ 503 (567)
T PLN02612 424 MSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEP 503 (567)
T ss_pred hhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcc
Confidence 55444445445567777766667788899999999999999999999752 1345666677789988888888777
Q ss_pred CCCCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 330 YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 330 ~r~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
.+|.+++|++||||||||+.++++ ++||||+.||++||++|+++++.
T Consensus 504 ~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 504 CRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred cCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 788888999999999999654444 79999999999999999999864
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=3.2e-34 Score=287.02 Aligned_cols=343 Identities=20% Similarity=0.319 Sum_probs=250.3
Q ss_pred CCCCCCCccccc-ccC-CCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 014827 21 LNQLPTPLGTLF-YTQ-FSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGL 98 (418)
Q Consensus 21 ~~~~p~p~~~~~-~l~-~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~ 98 (418)
+|.+|.|++.+. +++ .+.+++.+|++++..+...... ..+.+.+++++|+.+|++++++++.+.+.+++|++.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~ 176 (453)
T TIGR02731 99 FPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVR--GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN 176 (453)
T ss_pred CCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhc--CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 456778887765 553 4579999999987633221110 123345679999999999999999999999999999999
Q ss_pred cCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-C
Q 014827 99 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G 177 (418)
Q Consensus 99 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~ 177 (418)
+.+++++|+..++..+..++ ....+....+..|+....++++|.+.+++.|++|++|++|++|..+++ |++++|++ +
T Consensus 177 ~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~ 254 (453)
T TIGR02731 177 FINPDELSMTVVLTALNRFL-QERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLAD 254 (453)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEec
Confidence 99999999999998887654 333334445566665567999999999999999999999999987654 66767777 4
Q ss_pred Ce-----EEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCCcccee
Q 014827 178 KE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTF 252 (418)
Q Consensus 178 g~-----~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
|+ ++.||+||+|+|++.+.+|++... +...+.+.+..+++.+++++++++++++.... ..++...... ...
T Consensus 255 ~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~-~~~ 330 (453)
T TIGR02731 255 GEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD--HLLFSRSPLL-SVY 330 (453)
T ss_pred CCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCCCCcEEEEEEEEccccCCCC--ceeeeCCCcc-eee
Confidence 44 789999999999999999986532 11345566777788899999999999865321 1122211111 112
Q ss_pred eeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCC----CCceeeeeeEEEcCCCccccCCCCC
Q 014827 253 FDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGSY 328 (418)
Q Consensus 253 ~d~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~~~~~L~~~~p~~----~~~~~~~~~v~r~~~a~~~~~pg~~ 328 (418)
++.+.....+.+++++++++.+...+.+.+++++|+.+.++++|+++||.. ...++++..+.+.+++.+.+.||..
T Consensus 331 ~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~ 410 (453)
T TIGR02731 331 ADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQ 410 (453)
T ss_pred cchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCCh
Confidence 222222122233456777765555566778999999999999999999852 1234666677788888877778866
Q ss_pred CCCCCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHH
Q 014827 329 KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 329 ~~r~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il 372 (418)
..++...+|++||||||+|+.+.++ ++||||++||++||++|+
T Consensus 411 ~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 411 QYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred hhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence 6677778899999999999643333 799999999999999874
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=5.5e-34 Score=282.73 Aligned_cols=329 Identities=26% Similarity=0.335 Sum_probs=246.0
Q ss_pred CCCCCccccc-ccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC
Q 014827 23 QLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAP 101 (418)
Q Consensus 23 ~~p~p~~~~~-~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~ 101 (418)
.+|.|++... +++++.+++.+|.++++.+..+.+. . ...++++|+++|++++++++++.+.+++|++.++++.+
T Consensus 88 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~ 162 (419)
T TIGR03467 88 RLPAPLHLARGLLRAPGLSWADKLALARALLALRRT--R---FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTP 162 (419)
T ss_pred CCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--C---ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3677877655 7788999999999988765543321 1 13578999999999988899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE-ECCeE
Q 014827 102 AEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKET 180 (418)
Q Consensus 102 ~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~-~~g~~ 180 (418)
++++|+..++..++..+........+.+++||+++.+.++|++.|++.|++|++|++|++|..++ +++..+. .+|++
T Consensus 163 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~g~~ 240 (419)
T TIGR03467 163 PERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA--GGIRALVLSGGET 240 (419)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--CcceEEEecCCcc
Confidence 99999999888876533222223446788999876556779999988999999999999999887 4443333 36788
Q ss_pred EecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeeecccccc
Q 014827 181 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYD 260 (418)
Q Consensus 181 ~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 260 (418)
+.||+||+|+|++++.+|+++. ...+.+..+++.++.++++.++++++.+.++..+ ......| +++.+..
T Consensus 241 ~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~-- 310 (419)
T TIGR03467 241 LPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGL--VGGLAQW-LFDRGQL-- 310 (419)
T ss_pred ccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeee--cCCceeE-EEECCcC--
Confidence 9999999999999999998652 2345678888999999999999987533332111 1122333 3432211
Q ss_pred ccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCCCCCCC
Q 014827 261 EHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPN 340 (418)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~~~~~~ 340 (418)
. +...++.+.+....++.+++++++.+.++++|++++|......+++..+.+|.++.+.+.+|....+|...++.+|
T Consensus 311 --~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 387 (419)
T TIGR03467 311 --A-GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPN 387 (419)
T ss_pred --C-CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCC
Confidence 1 1223443333445567778999999999999999999763334667778889888888888876566766678899
Q ss_pred EEEeccccccCCCc-cchHHHHHHHHHHHHHHHH
Q 014827 341 LFMAGDWITTRHGS-WSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 341 l~laGd~~~~~~g~-~~~egAi~SG~~aA~~Il~ 373 (418)
|||||||+. .++ ++||||+.||.+||++|++
T Consensus 388 l~~aGd~~~--~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 388 LFLAGDWTA--TGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred EEEeccccc--CCCcchHHHHHHHHHHHHHHHhC
Confidence 999999965 344 7999999999999999863
No 6
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=4e-30 Score=256.28 Aligned_cols=329 Identities=19% Similarity=0.221 Sum_probs=238.2
Q ss_pred ccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHH
Q 014827 33 YTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 112 (418)
Q Consensus 33 ~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~ 112 (418)
+++++.+++.+|+++...+..... ...+.+++++|+++|++++ ++++.++.+++|++.++++.+++++|+..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 173 (434)
T PRK07233 99 LLRFPHLSLIDKFRLGLLTLLARR----IKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWS 173 (434)
T ss_pred HHcCCCCCHHHHHHhHHHHHhhhh----cccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHH
Confidence 556778899999986654332211 1123457889999999986 67778899999999999999999999988876
Q ss_pred HHHHHHhhcCC--CcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEcc
Q 014827 113 ILYFIILAHQK--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAV 190 (418)
Q Consensus 113 ~l~~~~~~~~~--~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~ 190 (418)
.+......... ...+.+++||+ +.|+++|++.+++.|++|++|++|++|..++ ++++++..++++++||+||+|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~ 250 (434)
T PRK07233 174 RIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVDGEEEDFDAVISTA 250 (434)
T ss_pred HHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeCCceEECCEEEECC
Confidence 66533111110 12357899997 5799999999999999999999999999876 5566666678899999999999
Q ss_pred ChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeeeccccccccCCCCCeEE
Q 014827 191 GISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVI 270 (418)
Q Consensus 191 p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~l 270 (418)
|++.+.+++++.. ....+.++.+.+.+..+++++++++... ..+........+... ++..+...+...+++++++
T Consensus 251 p~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~ 325 (434)
T PRK07233 251 PPPILARLVPDLP---ADVLARLRRIDYQGVVCMVLKLRRPLTD-YYWLNINDPGAPFGG-VIEHTNLVPPERYGGEHLV 325 (434)
T ss_pred CHHHHHhhcCCCc---HHHHhhhcccCccceEEEEEEecCCCCC-CceeeecCCCCCcce-EEEecccCCccccCCceEE
Confidence 9999999886431 3445567788888899999999887542 111101110111222 2223333332222345544
Q ss_pred EEEee-c-CCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCCCCCCCEEEecccc
Q 014827 271 QADFY-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWI 348 (418)
Q Consensus 271 ~~~~~-~-~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~~~~~~l~laGd~~ 348 (418)
.+.++ . ..++..++++++++.++++|++++|++....++...+.+|+++.+.+.||+...++...++.+|||||||+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~ 405 (434)
T PRK07233 326 YLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQ 405 (434)
T ss_pred EEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcc
Confidence 33322 2 233446789999999999999999987555678888999999999998887667777778889999999963
Q ss_pred ccCCCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 349 TTRHGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 349 ~~~~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
..++ ++|++|+.||++||++|++.+.
T Consensus 406 --~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 406 --IYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred --cCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 2333 5899999999999999998865
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=1.8e-27 Score=230.60 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=213.1
Q ss_pred HhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhc------------CC----Ccce
Q 014827 64 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH------------QK----NFDL 127 (418)
Q Consensus 64 ~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~------------~~----~~~~ 127 (418)
+...+++|+++|++++ +++++++++++|++.++|+++.+++|+...++.+....... +. ...+
T Consensus 129 ~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~ 207 (444)
T COG1232 129 WEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKF 207 (444)
T ss_pred CCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccc
Confidence 3457899999999995 99999999999999999999999999996666654331100 00 1246
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhcccccCCh
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNR 207 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~ 207 (418)
++++||++ +|+++|++.++.. |++|++|++|..+.. + .+.+..+|++++||.||+|+|++.+.+++++..
T Consensus 208 ~~~~gG~~-~l~~al~~~l~~~---i~~~~~V~~i~~~~~-~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~---- 277 (444)
T COG1232 208 GYLRGGLQ-SLIEALAEKLEAK---IRTGTEVTKIDKKGA-G-KTIVDVGGEKITADGVISTAPLPELARLLGDEA---- 277 (444)
T ss_pred cccCccHH-HHHHHHHHHhhhc---eeecceeeEEEEcCC-c-cEEEEcCCceEEcceEEEcCCHHHHHHHcCCcc----
Confidence 77899985 6999999998764 999999999999853 3 455666788999999999999999999998832
Q ss_pred HHHHHhcCCCCccEEEEEEEeccCCC--CCCCCcceeccCCC-ccceeeeccccccccCCCCCeEEEEEeec--CCCCCC
Q 014827 208 EEFLKVLNLASIDVVSVKLWFDKKVT--VPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMP 282 (418)
Q Consensus 208 ~~~~~l~~l~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~-~~~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~ 282 (418)
......++.+.++++|.+.++++.. .+..+..+...... ..-.+++ |+..|...+.+.+++.+.++. ......
T Consensus 278 -~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~~~~g~~~~~~ 355 (444)
T COG1232 278 -VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEFGGPGDESVST 355 (444)
T ss_pred -hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEeecCCCcchhc
Confidence 2335677888888899999987621 12222212111112 2222343 433343333366777766653 233456
Q ss_pred CCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCC----CCCCCCCCEEEeccccccCCCccchH
Q 014827 283 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWITTRHGSWSQE 358 (418)
Q Consensus 283 ~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~----~~~~~~~~l~laGd~~~~~~g~~~~e 358 (418)
++|||+++.++++|.++++...+ .++..+.||++++|+|.+|+...+. .+.+.++||+++|.|. .++ +++
T Consensus 356 ~~dee~~~~~l~~L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~---~g~-g~~ 429 (444)
T COG1232 356 MSDEELVAAVLDDLKKLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYG---EGV-GLP 429 (444)
T ss_pred cCHHHHHHHHHHHHHHHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCC---CCC-Cch
Confidence 78999999999999999998763 3488899999999999999876533 2333448999999994 232 789
Q ss_pred HHHHHHHHHHHHHH
Q 014827 359 RSYVTGLEAANRVV 372 (418)
Q Consensus 359 gAi~SG~~aA~~Il 372 (418)
+|+.+|..||++++
T Consensus 430 d~I~~g~~aa~~l~ 443 (444)
T COG1232 430 DCIAAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999886
No 8
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=2.9e-27 Score=237.52 Aligned_cols=321 Identities=14% Similarity=0.160 Sum_probs=223.5
Q ss_pred CcccccccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhH
Q 014827 27 PLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCS 106 (418)
Q Consensus 27 p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~S 106 (418)
|.++..+++++++|+.+|++.+..+.. ... ...+++|+++|++++ +++++.+.+++|++.++|+.+++++|
T Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls 181 (463)
T PRK12416 111 PMSVESLFSSTLVSTKGKIVALKDFIT-----KNK---EFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELT 181 (463)
T ss_pred CCChHHhhcCCcCCHHHHHHhhhhhcc-----CCC---CCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCccccc
Confidence 444444678899999999987653321 011 124799999999984 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----------h------cCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCe
Q 014827 107 AAATLGILYFIIL----------A------HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 170 (418)
Q Consensus 107 a~~~~~~l~~~~~----------~------~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~ 170 (418)
+..+++.+..+.. . ..+...+.+++|||+ +|+++|++.+.+ ++|++|++|++|..++ ++
T Consensus 182 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~ 256 (463)
T PRK12416 182 MASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLS-TIIDRLEEVLTE--TVVKKGAVTTAVSKQG--DR 256 (463)
T ss_pred HHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHH-HHHHHHHHhccc--ccEEcCCEEEEEEEcC--CE
Confidence 9776655432210 0 011223457899985 699999998864 6899999999999877 44
Q ss_pred EEEEEE-CCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCC-CC-CCcceeccCCC
Q 014827 171 ISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV-PN-VSNACSGFGDS 247 (418)
Q Consensus 171 v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~-~~-~~~~~~~~~~~ 247 (418)
+ .|++ +|+++.||+||+|+|++.+.+|+.++.+ ...+.++.+.++.+++++|+++.+. +. .++.+......
T Consensus 257 ~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l-----~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~ 330 (463)
T PRK12416 257 Y-EISFANHESIQADYVVLAAPHDIAETLLQSNEL-----NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSD 330 (463)
T ss_pred E-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcch-----hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCC
Confidence 5 4655 5678999999999999999999875432 2356777888999999999865431 11 11112111111
Q ss_pred cc--ceeeeccccccccCCCCCeEEEEEeec-----CCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCc
Q 014827 248 LA--WTFFDLNKIYDEHKDDSATVIQADFYH-----ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL 320 (418)
Q Consensus 248 ~~--~~~~d~s~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~ 320 (418)
.. ...++ ++..+... +++.++...+++ .+++.+++++++.+.++++|+++++... .++...+.+|.+++
T Consensus 331 ~~~~~~~~~-s~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~--~p~~~~v~~W~~a~ 406 (463)
T PRK12416 331 LHCDACTWT-SRKWKHTS-GKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG--EPEVVEVTNWKDLM 406 (463)
T ss_pred CeEEEEEee-cCCCCCcC-CCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC--CceEEEEEEccccC
Confidence 10 01122 22112222 345555444442 2346678999999999999999998543 57788899999999
Q ss_pred cccCCCCCCCC----CCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHh
Q 014827 321 THFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 321 ~~~~pg~~~~r----~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
|+|.+|+.... .....+.+|||+||+++ .| .+|++|+.||++||++|++.+
T Consensus 407 P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~---~g-~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 407 PKYHLEHNQAVQSLQEKMMNLYPNIYLAGASY---YG-VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred CCcCcCHHHHHHHHHHHHHhhCCCeEEecccc---cc-ccHHHHHHHHHHHHHHHHHHh
Confidence 99988864321 11223468999999995 23 379999999999999998764
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=7.7e-27 Score=234.53 Aligned_cols=325 Identities=14% Similarity=0.157 Sum_probs=229.5
Q ss_pred CCCCcccccccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChh
Q 014827 24 LPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE 103 (418)
Q Consensus 24 ~p~p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 103 (418)
.+.|.++..++++..+++.+|++.+. ..+. +.. ...++|++||++++ +++++.+.+++|++.++|+.+++
T Consensus 100 ~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~----~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~ 169 (462)
T TIGR00562 100 MPVPTKIAPFVKTGLFSLGGKLRAGM--DFIR---PAS----PGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPS 169 (462)
T ss_pred ecCCCChHHHhcCCCCCchhhHHhhh--hhcc---CCC----CCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHH
Confidence 35566655577888899999988753 1111 011 23569999999985 88999999999999999999999
Q ss_pred hhHHHHHHHHHHHHH----------hhc---C-----------CCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCcee
Q 014827 104 QCSAAATLGILYFII----------LAH---Q-----------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRV 159 (418)
Q Consensus 104 ~~Sa~~~~~~l~~~~----------~~~---~-----------~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V 159 (418)
++|+..+++.+.... ... . .+..+..+.||++ +|++.|++.+. .++|++|++|
T Consensus 170 ~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~--~~~i~~~~~V 246 (462)
T TIGR00562 170 KLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLE-TLPEEIEKRLK--LTKVYKGTKV 246 (462)
T ss_pred HhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHH-HHHHHHHHHhc--cCeEEcCCeE
Confidence 999998776543221 000 0 0111345789984 69999998885 2789999999
Q ss_pred eEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCC--
Q 014827 160 TDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-- 236 (418)
Q Consensus 160 ~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~-- 236 (418)
++|..++ +++ .|++ +|+++.||+||+|+|++.+..++++. +....+.+.+++|.++.++.+.|+++.+...
T Consensus 247 ~~I~~~~--~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~---~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~ 320 (462)
T TIGR00562 247 TKLSHRG--SNY-TLELDNGVTVETDSVVVTAPHKAAAGLLSEL---SNSASSHLDKIHSPPVANVNLGFPEGSVDGELE 320 (462)
T ss_pred EEEEecC--CcE-EEEECCCcEEEcCEEEECCCHHHHHHHhccc---CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCC
Confidence 9999876 334 4565 56789999999999999999998763 2455677889999999999999987643211
Q ss_pred CCcceeccCC---CccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeee
Q 014827 237 VSNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDH 311 (418)
Q Consensus 237 ~~~~~~~~~~---~~~~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~ 311 (418)
.+..+..... ..++ +++.+. .+...+++.+++.+.+.+ ..++.+++++++++.++++|.++++... .+.+.
T Consensus 321 ~~g~l~~~~~~~~~~~~-i~~s~~-~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~--~p~~~ 396 (462)
T TIGR00562 321 GFGFLISRSSKFAILGC-IFTSKL-FPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINN--EPEML 396 (462)
T ss_pred ceEEEccCCCCCceEEE-EEEccc-cCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCC--CCcEE
Confidence 1111111111 1233 454332 233333345555443322 2456678999999999999999997432 46778
Q ss_pred eEEEcCCCccccCCCCCCCCCC----CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHh
Q 014827 312 KIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 312 ~v~r~~~a~~~~~pg~~~~r~~----~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+++|++++|.|.+|+....+. .....+|||+||||+ .+ .+|++|+.||+.+|++|++.+
T Consensus 397 ~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~---~g-~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 397 CVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSF---EG-VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred EEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEecccc---CC-CcHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999997544332 223457999999995 23 389999999999999998765
No 10
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=7.9e-27 Score=236.39 Aligned_cols=330 Identities=14% Similarity=0.199 Sum_probs=226.5
Q ss_pred CCCcccccccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhh
Q 014827 25 PTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQ 104 (418)
Q Consensus 25 p~p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 104 (418)
+.|.++..+++++.+++.+|++++.......+. .. ..+++|+++|++++ +++++++.+++|++.++|+.++++
T Consensus 107 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ 179 (496)
T PLN02576 107 PLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRP--PP----PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSS 179 (496)
T ss_pred EcCCChHHhcCcCcCChhHHHHHhHHHhhccCC--CC----CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHH
Confidence 456665456788899999999876533221111 11 25789999999985 999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-----------H---hhc---------------CCCcceeeecCCcchhhHHHHHHHHHhcCcEEEc
Q 014827 105 CSAAATLGILYFI-----------I---LAH---------------QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 155 (418)
Q Consensus 105 ~Sa~~~~~~l~~~-----------~---~~~---------------~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l 155 (418)
+|+..+++.+... + ... ........++|||+ .|+++|++.+.+ ++|++
T Consensus 180 lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~L~~~la~~l~~--~~i~l 256 (496)
T PLN02576 180 LSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQ-TLPDALAKRLGK--DKVKL 256 (496)
T ss_pred HhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHH-HHHHHHHHhhCc--CcEEc
Confidence 9999877664432 0 000 01122345689985 699999987621 68999
Q ss_pred CceeeEEEecCCCCeEEEEEE---CC-eEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccC
Q 014827 156 GRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK 231 (418)
Q Consensus 156 ~t~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~ 231 (418)
|++|++|+.+++ +++ .|++ +| +++.||+||+|+|+.++..++.+.. +...+.+..++|.++.+|+++|+++
T Consensus 257 ~~~V~~I~~~~~-~~~-~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~ 331 (496)
T PLN02576 257 NWKVLSLSKNDD-GGY-SLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKE 331 (496)
T ss_pred CCEEEEEEECCC-CcE-EEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchH
Confidence 999999998774 323 3443 34 3699999999999999999987632 4456778899999999999999886
Q ss_pred CCCCC-----CCcce---eccCC---CccceeeeccccccccCCCCCeEEEEEeec---CCCCCCCCHHHHHHHHHHHHh
Q 014827 232 VTVPN-----VSNAC---SGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFYH---ANELMPLKDDQVVAKAVSYLS 297 (418)
Q Consensus 232 ~~~~~-----~~~~~---~~~~~---~~~~~~~d~s~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~el~~~~~~~L~ 297 (418)
.+... +...+ ..... ..++ +++ +...+...+++..++. .|.. .+++.+++++++++.++++|.
T Consensus 332 ~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~~~~~~~~l~-~~~~~~~~~~~~~~s~ee~~~~~~~~L~ 408 (496)
T PLN02576 332 AVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDRAPEGRVLLL-NYIGGSRNTGIASASEEELVEAVDRDLR 408 (496)
T ss_pred HcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCCCCCCCEEEE-EEECCCCCcccccCCHHHHHHHHHHHHH
Confidence 54221 11111 00000 1112 333 2222333323333433 3432 245777899999999999999
Q ss_pred hhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCC---CCC--CCEEEeccccccCCCccchHHHHHHHHHHHHHHH
Q 014827 298 KCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---TSF--PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 298 ~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~---~~~--~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il 372 (418)
++++......+....+++|++++|.|.+|+....+..+ ... +|||+||||+ . | .++++|+.||.++|++|+
T Consensus 409 ~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~--~-g-~~i~~ai~sg~~aA~~i~ 484 (496)
T PLN02576 409 KLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYR--G-G-VALGKCVESGYEAADLVI 484 (496)
T ss_pred HHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEecccc--C-C-ccHHHHHHHHHHHHHHHH
Confidence 99985321134455678899999999999864332221 122 7999999995 2 4 389999999999999999
Q ss_pred HHhC
Q 014827 373 DYLG 376 (418)
Q Consensus 373 ~~~~ 376 (418)
..+.
T Consensus 485 ~~~~ 488 (496)
T PLN02576 485 SYLE 488 (496)
T ss_pred HHHh
Confidence 8765
No 11
>PRK07208 hypothetical protein; Provisional
Probab=99.95 E-value=3e-26 Score=231.13 Aligned_cols=310 Identities=16% Similarity=0.151 Sum_probs=214.4
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHH---------HHHHHhhc---------C-C--Ccc
Q 014827 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILAH---------Q-K--NFD 126 (418)
Q Consensus 68 d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~---------l~~~~~~~---------~-~--~~~ 126 (418)
+++|++||+++ .+++++.+.+++|++.++|+.+++++|+.+++.. +...+... . . ...
T Consensus 131 ~~~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (479)
T PRK07208 131 EEDSFEDWVIN-RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEE 209 (479)
T ss_pred CCCCHHHHHHH-hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeE
Confidence 68999999998 5889999999999999999999999999864432 22121110 0 0 124
Q ss_pred eeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEccChhhHHHhhcc
Q 014827 127 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 127 ~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
+.+|+||++ .|+++|++.+++.|++|++|++|++|..+++ +.+++++. +|+ ++.||+||+|+|++.+.+++.+
T Consensus 210 ~~~p~gG~~-~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~ 287 (479)
T PRK07208 210 FRYPKLGPG-QLWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDP 287 (479)
T ss_pred EeCCCCCcc-hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCC
Confidence 567899985 6999999999999999999999999999874 54444544 242 5899999999999999888874
Q ss_pred cccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeeeccccccccCCCCC-eEEEEEee--cCC
Q 014827 202 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFY--HAN 278 (418)
Q Consensus 202 ~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~-~~l~~~~~--~~~ 278 (418)
. + +....+.++.+.+.++++++++++++...+..+..+.+...... .+...+...+...+++. ..+.+.++ ..+
T Consensus 288 ~-~-~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~ 364 (479)
T PRK07208 288 P-P-PPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVG-RLQNFNNWSPYLVPDGRDTWLGLEYFCFEGD 364 (479)
T ss_pred C-C-CHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccc-eecccccCCcccCCCCCceEEEEEEEccCCC
Confidence 3 2 24455667788888889999999887542222211111110110 01011222222222333 33333332 334
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCC---CCCCCCCEEEeccccccCCCcc
Q 014827 279 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSW 355 (418)
Q Consensus 279 ~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~---~~~~~~~l~laGd~~~~~~g~~ 355 (418)
+..+++++++++.++++|.++.+ +....++..++.+|+.++|.|.+|+....+. ..++.+|||+||++. ...+.
T Consensus 365 ~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~--~~~~~ 441 (479)
T PRK07208 365 DLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNG--MHRYN 441 (479)
T ss_pred ccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccc--ccccC
Confidence 55578999999999999999744 3344688889999999999999887654332 225678999999873 23336
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCccccccCCCC
Q 014827 356 SQERSYVTGLEAANRVVDYLGDGSFSKIIPVEED 389 (418)
Q Consensus 356 ~~egAi~SG~~aA~~Il~~~~~~~~~~~~~~~~~ 389 (418)
+|++|+.||..+|+.|++.. ..+.+||++.|
T Consensus 442 ~~d~a~~sg~~~a~~i~~~~---~~~~~~~~~~~ 472 (479)
T PRK07208 442 NQDHSMLTAMLAVENIIAGE---TKHDIWQVNTE 472 (479)
T ss_pred ChhHHHHHHHHHHHHHhcCC---ccCCceEeccc
Confidence 89999999999999998874 22447775443
No 12
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.94 E-value=2.1e-25 Score=223.49 Aligned_cols=313 Identities=16% Similarity=0.196 Sum_probs=215.0
Q ss_pred ccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHH
Q 014827 33 YTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 112 (418)
Q Consensus 33 ~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~ 112 (418)
++..+.++..+|++.+.... .......+++|++||+++ +++++.++.++.|++.++|+.+++++|+..+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 182 (451)
T PRK11883 112 FLFAGLVSPIGKLRAAADLR--------PPRWKPGQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFP 182 (451)
T ss_pred hhcCCCCCHHHHHHhhCccc--------CCCCCCCCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHH
Confidence 44567788888877543221 011124688999999997 589999999999999999999999999987665
Q ss_pred HHHHHHh----------h----c--CCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE
Q 014827 113 ILYFIIL----------A----H--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 176 (418)
Q Consensus 113 ~l~~~~~----------~----~--~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~ 176 (418)
.+..... . . .....+.+++||++ .|++.|++.+... +|++|++|++|..++ +.+ .|.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~-~v~~ 256 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQ-SLIEALEEKLPAG--TIHKGTPVTKIDKSG--DGY-EIVL 256 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHH-HHHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeE-EEEE
Confidence 4432210 0 0 01223456889974 6999999877543 899999999999876 444 3555
Q ss_pred -CCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCC-CCCCCcceeccCCC--cccee
Q 014827 177 -GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGDS--LAWTF 252 (418)
Q Consensus 177 -~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 252 (418)
+|+++.||+||+|+|+..+.+++.++ +..+.++.+++.++.+++++|+++.. ....++.++..+.. .....
T Consensus 257 ~~g~~~~~d~vI~a~p~~~~~~l~~~~-----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (451)
T PRK11883 257 SNGGEIEADAVIVAVPHPVLPSLFVAP-----PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACT 331 (451)
T ss_pred CCCCEEEcCEEEECCCHHHHHHhccCh-----hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEE
Confidence 67889999999999999999986542 23456788899999999999988742 11112222221111 11222
Q ss_pred eeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCC
Q 014827 253 FDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY 330 (418)
Q Consensus 253 ~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~ 330 (418)
++ +...+...+++..++...+.. .....+.+++++++.++++|+++++... .+.+..+.+|.+++|.+.+|+...
T Consensus 332 ~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~~~rw~~a~p~~~~~~~~~ 408 (451)
T PRK11883 332 WT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG--DPEFTIVQRWKEAMPQYGVGHIER 408 (451)
T ss_pred eE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCccCCCCCccHHHH
Confidence 33 222233332344444433321 2224567899999999999999997432 456778899999999998887432
Q ss_pred C----CCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 331 M----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 331 r----~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
. +.... ++|||+||+|+ . + .++++|+.||+.+|++|++
T Consensus 409 ~~~l~~~l~~-~~~l~~aG~~~--~-g-~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 409 VAELRAGLPH-YPGLYVAGASF--E-G-VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHhhhh-CCCEEEECccc--C-C-ccHHHHHHHHHHHHHHHHh
Confidence 2 22222 67999999995 3 3 4799999999999999975
No 13
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=9.7e-26 Score=217.44 Aligned_cols=370 Identities=23% Similarity=0.296 Sum_probs=275.8
Q ss_pred CccCCCCCCceecccccccCCC--CCCCccccc-ccCCCCCChhhhhhhch-hHHHHhhcCCChhHHhhcCCccHHHHHH
Q 014827 2 KSAQYSEEGLEVEFPIFQDLNQ--LPTPLGTLF-YTQFSRLPLVDRLTSLP-LMAAVIDFDNTDVAWRKYDSITARELFK 77 (418)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~p~p~~~~~-~l~~~~ls~~dk~~~~~-l~~~~~~~~~~~~~~~~~d~~s~~e~l~ 77 (418)
|+...+..|....-+.+.+++. -|.|++... +++.+.+++++|++++- +....+ ...+.++++|++|++|||+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---g~~~~~~eld~~s~~d~l~ 156 (485)
T COG3349 80 REHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPI---GADRSLRELDKISFADWLK 156 (485)
T ss_pred HhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccc---hhHHHHHHHhcccHHHHHH
Confidence 3445556666677777777764 567888777 99999999999999753 332211 1256788999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCc
Q 014827 78 QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR 157 (418)
Q Consensus 78 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t 157 (418)
+++.++..++..|.|+.....+.+++++|++.+...+..++....+......+.|+..+.+..++.+.+.+.|.+++...
T Consensus 157 ~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~ 236 (485)
T COG3349 157 EKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADY 236 (485)
T ss_pred HhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccc
Confidence 99999999999999999999999999999998888887765554455555677899899999999999999999999999
Q ss_pred eeeEEEecCCC--CeEEEEEECCe---EEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccCC
Q 014827 158 RVTDFIYDEER--CCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKV 232 (418)
Q Consensus 158 ~V~~I~~~~~~--g~v~~v~~~g~---~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~ 232 (418)
+|++|..+..+ .+++++.+.+. ...++.++.+...+.+...++.... ...+++.+..++..++++++++++...
T Consensus 237 pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~-~~~~f~~ly~l~~~p~~~~~l~~~~~~ 315 (485)
T COG3349 237 PVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWP-KWSNFDGLYGLRLVPVITLHLRFDGWV 315 (485)
T ss_pred eeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccccc-ccccccccccccccceeEEEEeecCcc
Confidence 99999876521 35777777654 3566778888877878777777532 234556777888889999999998654
Q ss_pred CCCCCCcceeccC------CCccceeeeccccccccCCCCC-eEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCC
Q 014827 233 TVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSA-TVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFST 305 (418)
Q Consensus 233 ~~~~~~~~~~~~~------~~~~~~~~d~s~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~el~~~~~~~L~~~~p~~~~ 305 (418)
+.....+..++.+ .+.+..++++...++.+..++. +.+.....+...|...+++++.....+++...+|....
T Consensus 316 ~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~ 395 (485)
T COG3349 316 TELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAE 395 (485)
T ss_pred ccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhc
Confidence 3211100011111 1122224444443334432222 33333344566677788999999999999999998765
Q ss_pred ceeeeeeEEEcCCCccccCCCCCCCCCCCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 306 ATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 306 ~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
+. ....+.+.+.+++...||...+||...|+++|++++|||+... ..++||+|..||+.||+.|++.++.
T Consensus 396 a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~-~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 396 AK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP-YLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred cc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecC-CcCccchhhhhHHHHHHHHHHhhhh
Confidence 44 4556777999999999999999999999999999999997432 3389999999999999999988875
No 14
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.90 E-value=1.4e-21 Score=197.76 Aligned_cols=293 Identities=14% Similarity=0.155 Sum_probs=186.5
Q ss_pred cCCccHHHHHHHhC-CCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHH
Q 014827 67 YDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 145 (418)
Q Consensus 67 ~d~~s~~e~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~ 145 (418)
+..+|+.+|+++++ +.++.++.++...+....+.++++.++...+.++... ... ....+++||+ +.|+++|++.
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~G~~~~~GG~-~~l~~aL~~~ 241 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QAP--HGLWHLHGSM-QTLSDRLVEA 241 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--ccC--CCceeecCcH-HHHHHHHHHH
Confidence 46799999999863 4444467777765433445667788876554333221 111 1135689997 5699999999
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC-----eEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCc
Q 014827 146 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 219 (418)
Q Consensus 146 l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g-----~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~ 219 (418)
++++|++|++|++|++|..++ +++.+|.+ ++ +++.||+||+|+|+..+.+|+++..++ ..+.+.+++++++
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~s 318 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPEP 318 (492)
T ss_pred HHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCCC
Confidence 999999999999999999887 55555655 43 578999999999999999898764332 3455567777776
Q ss_pred c-EEEEEEEeccCCCC-C-CCCcceeccCCCccceeeeccccccccCCCCCeEEEEEee-cCCCCCC-------CCHHHH
Q 014827 220 D-VVSVKLWFDKKVTV-P-NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQV 288 (418)
Q Consensus 220 ~-~~~v~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~l~~~~~-~~~~~~~-------~~~~el 288 (418)
+ .+++++.+++.... . .++. ...++. ....+...+...+...+++++.+.+... ....|.. ..++++
T Consensus 319 ~~~~~v~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~ 396 (492)
T TIGR02733 319 SGAFVFYLGVKRAALPVDCPPHL-QFLSDH-QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY 396 (492)
T ss_pred CceEEEEEeecccccCCCCCcce-eeccCC-CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence 4 55788999874211 1 1111 111111 1111222222223445456666543332 1112221 224568
Q ss_pred HHHHHHHHhhhhcCCCCceeeeeeEEEcCCCcc-----------ccCC--CCC-CCCCCCCCCCCCEEEeccccccCCCc
Q 014827 289 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT-----------HFFP--GSY-KYMMRGFTSFPNLFMAGDWITTRHGS 354 (418)
Q Consensus 289 ~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~-----------~~~p--g~~-~~r~~~~~~~~~l~laGd~~~~~~g~ 354 (418)
.+.+++.|++.+|++++ .++...+. .|..+- .... .+. ..++..+++++|||+||++++ +|
T Consensus 397 ~~~il~~le~~~p~l~~-~i~~~~v~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~--pG- 471 (492)
T TIGR02733 397 TQTIIERLGHYFDLLEE-NWVHVELA-TPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIH--PG- 471 (492)
T ss_pred HHHHHHHHHHHCCCccc-cEEEEEcc-CCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccC--CC-
Confidence 88999999999999975 56655543 443331 1111 110 112334689999999999964 44
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 014827 355 WSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 355 ~~~egAi~SG~~aA~~Il~~ 374 (418)
+++.+|+.||+.||+.|++.
T Consensus 472 ~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 472 EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CcHHHHHHHHHHHHHHHhhc
Confidence 57899999999999999863
No 15
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=4.4e-22 Score=198.46 Aligned_cols=280 Identities=16% Similarity=0.098 Sum_probs=184.9
Q ss_pred hcCCccHHHHHHHhC----------CCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcc
Q 014827 66 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 135 (418)
Q Consensus 66 ~~d~~s~~e~l~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~ 135 (418)
..+++|+.+|+++.. +.+++++.++.| +.+.++.+++++|+..+.. ...+.+ . -.++.+|+
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~~~g---~--~~~~~~G~- 200 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EELLEG---G--HGLMVRGY- 200 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccccCC---C--ceeecCCH-
Confidence 468999999876531 345555556677 4677889999999865311 000001 1 13566897
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHh-h-cccccCChHHHHH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL-I-KNSILCNREEFLK 212 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~L-l-~~~~~~~~~~~~~ 212 (418)
+.|+++|++ +.+|++|++|++|..+++ + +. |++ +|+++.||+||+|+|+..++++ + ..+.++ ....+.
T Consensus 201 ~~l~~~l~~-----~~~i~~~~~V~~i~~~~~-~-v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~a 271 (435)
T PLN02268 201 DPVINTLAK-----GLDIRLNHRVTKIVRRYN-G-VK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEA 271 (435)
T ss_pred HHHHHHHhc-----cCceeCCCeeEEEEEcCC-c-EE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHH
Confidence 468888764 567999999999998773 4 53 555 5678999999999999999753 2 223332 344567
Q ss_pred hcCCCCccEEEEEEEeccCCCCCCCCcceeccCCC--ccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHH
Q 014827 213 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQV 288 (418)
Q Consensus 213 l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~el 288 (418)
++++.+.+..++.+.|+++++.... +++.... .....++.. .. .++..++.+...+ +..+.+++++++
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~~~~---~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~ 343 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWPNVE---FLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEAA 343 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCCCCc---eeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHHH
Confidence 8889998999999999998774221 2232111 111122211 11 1234454433322 244667899999
Q ss_pred HHHHHHHHhhhhcCCCCceeeeeeEEEcCCCc------cccCCCCC-CCCCCCCCCCCCEEEeccccccCCCc-cchHHH
Q 014827 289 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGS-WSQERS 360 (418)
Q Consensus 289 ~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~------~~~~pg~~-~~r~~~~~~~~~l~laGd~~~~~~g~-~~~egA 360 (418)
++.++++|.+++|... .++...+++|.... ..+.||.. ...+.+.+|+++|||||+++. ..+ ++||||
T Consensus 344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts--~~~~g~~eGA 419 (435)
T PLN02268 344 ANFAMSQLKKMLPDAT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATS--SDFPGSVHGA 419 (435)
T ss_pred HHHHHHHHHHHcCCCC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCC--CcccccHHHH
Confidence 9999999999998643 46677788886432 22345542 122334568889999999964 333 899999
Q ss_pred HHHHHHHHHHHHHHh
Q 014827 361 YVTGLEAANRVVDYL 375 (418)
Q Consensus 361 i~SG~~aA~~Il~~~ 375 (418)
+.||++||++|++.+
T Consensus 420 ~~sG~raA~~v~~~l 434 (435)
T PLN02268 420 YSTGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998754
No 16
>PLN02529 lysine-specific histone demethylase 1
Probab=99.87 E-value=4.7e-20 Score=190.00 Aligned_cols=286 Identities=14% Similarity=0.108 Sum_probs=176.9
Q ss_pred hcCCccHHHHHHHhC------CCHHHHHHHHHHHHHhh---hcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcch
Q 014827 66 KYDSITARELFKQFG------CSERLYRNVIGPLVQVG---LFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLRE 136 (418)
Q Consensus 66 ~~d~~s~~e~l~~~~------~~~~~~~~~~~p~~~~~---~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~ 136 (418)
..+++|+.+|+++.. .++. -+.++...+... .+.+.+.+|+... ........ +.....+.||+ +
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~~~---~~~~~~e~--~G~~~~i~GG~-~ 357 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAAYW---DQDDPYEM--GGDHCFLAGGN-W 357 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhhHh---hhcccccc--CCceEEECCcH-H
Confidence 367899999998643 3443 234444433333 3334444444322 11100011 11224567997 4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHH--hhcccccCChHHHHHhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVL 214 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~--Ll~~~~~~~~~~~~~l~ 214 (418)
+|+++|++. ..|++|++|++|..+++ | | .|+++++++.||+||+|+|+.++.+ +...+.++ +...++++
T Consensus 358 ~Li~aLA~~-----L~IrLnt~V~~I~~~~d-G-V-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~ 428 (738)
T PLN02529 358 RLINALCEG-----VPIFYGKTVDTIKYGND-G-V-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAID 428 (738)
T ss_pred HHHHHHHhc-----CCEEcCCceeEEEEcCC-e-E-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHH
Confidence 699988763 46999999999999874 4 5 4667778899999999999999984 32333342 45567899
Q ss_pred CCCCccEEEEEEEeccCCCCCCCCcceeccC-----CCccceee-eccccccccCCCCCeEEEEEeec--CCCCCCCCHH
Q 014827 215 NLASIDVVSVKLWFDKKVTVPNVSNACSGFG-----DSLAWTFF-DLNKIYDEHKDDSATVIQADFYH--ANELMPLKDD 286 (418)
Q Consensus 215 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ 286 (418)
++.+.++.+|++.|++++|.... . .++.. ....+..+ +.+. . +++.++.....+ +..+..++++
T Consensus 429 rL~yG~v~KV~L~F~~~FW~~~~-~-~fG~l~~~~~~~g~~~~~~~~~~-----~-~ggpvLvafv~G~~A~~le~lsde 500 (738)
T PLN02529 429 RLGFGLLNKVAMVFPSVFWGEEL-D-TFGCLNESSNKRGEFFLFYGYHT-----V-SGGPALVALVAGEAAQRFENTDPS 500 (738)
T ss_pred cCCCceeEEEEEEeCCccccCCC-C-ceEEEeccCCCCceEEEEecCCC-----C-CCCCEEEEEECchhhHHHhcCCHH
Confidence 99999999999999998874321 1 22221 01111112 2111 1 233444433322 2346678999
Q ss_pred HHHHHHHHHHhhhhcC--CCCceeeeeeEEEcCCCccc------cCCCCCC-CCCCCCCC-CCCEEEeccccccCCCccc
Q 014827 287 QVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTS-FPNLFMAGDWITTRHGSWS 356 (418)
Q Consensus 287 el~~~~~~~L~~~~p~--~~~~~~~~~~v~r~~~a~~~------~~pg~~~-~r~~~~~~-~~~l~laGd~~~~~~g~~~ 356 (418)
++++.+++.|.++|+. .....++...+++|....+. ..+|+.. .......+ .++|||||+++...++ ++
T Consensus 501 eii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~p-gt 579 (738)
T PLN02529 501 TLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYP-AT 579 (738)
T ss_pred HHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCC-eE
Confidence 9999999999999963 21124566677788653321 1223211 11112234 4789999999753333 89
Q ss_pred hHHHHHHHHHHHHHHHHHhC
Q 014827 357 QERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 357 ~egAi~SG~~aA~~Il~~~~ 376 (418)
|+||+.||.+||++|++.+.
T Consensus 580 VeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 580 MHGAFLSGLREASRILHVAR 599 (738)
T ss_pred eHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 17
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.86 E-value=1.5e-19 Score=183.36 Aligned_cols=295 Identities=12% Similarity=0.010 Sum_probs=185.9
Q ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHH
Q 014827 67 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 146 (418)
Q Consensus 67 ~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l 146 (418)
....|+.+|++++..++ .++.++.. ....++.+|++.++...+-.+..+ . ....++.||+ ..++++|++.+
T Consensus 159 ~~~~s~~~~~~~~~~~~-~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~----~--~g~~~~~gG~-~~l~~al~~~~ 229 (502)
T TIGR02734 159 LAWRSLYSKVARFFSDE-RLRQAFSF-HALFLGGNPFRTPSIYALISALER----E--WGVWFPRGGT-GALVAAMAKLA 229 (502)
T ss_pred cCcCCHHHHHHhhcCCH-HHHHHhcc-cceeeccCcccchHHHHHHHHHHh----h--ceEEEcCCCH-HHHHHHHHHHH
Confidence 46789999999874455 46667653 344667788888765433222111 1 1234788996 57999999999
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEEC-CeEEecCEEEEccChhhHH-HhhcccccCChHHHHHhcCCCC-ccEEE
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVVS 223 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~A~p~~~~~-~Ll~~~~~~~~~~~~~l~~l~~-~~~~~ 223 (418)
+++|++|+++++|++|..++ +++++|+++ |+++.||+||+|+++..+. .|++....+ ....+.++++++ .+.++
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeeeE
Confidence 99999999999999999876 667788874 6789999999999997765 566544321 122234555664 36678
Q ss_pred EEEEecc---CCCCCCCCcceeccCC--------------Cccceeee-ccccccccCCCCCeEEEEEee-cC-----CC
Q 014827 224 VKLWFDK---KVTVPNVSNACSGFGD--------------SLAWTFFD-LNKIYDEHKDDSATVIQADFY-HA-----NE 279 (418)
Q Consensus 224 v~l~~~~---~~~~~~~~~~~~~~~~--------------~~~~~~~d-~s~~~~~~~~~~~~~l~~~~~-~~-----~~ 279 (418)
+++.++. +......++.++..+. .....+.. .+...+..++++++.+.+... +. .+
T Consensus 307 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~ 386 (502)
T TIGR02734 307 LYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVD 386 (502)
T ss_pred EEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCC
Confidence 8999883 3321112222221110 00111111 122334455556666543332 21 12
Q ss_pred CCCCCHHHHHHHHHHHHhhh-hcCCCCceeeeeeEEEcCC-----------CccccCC--C-CCCCCCC-CCCCCCCEEE
Q 014827 280 LMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPK-----------SLTHFFP--G-SYKYMMR-GFTSFPNLFM 343 (418)
Q Consensus 280 ~~~~~~~el~~~~~~~L~~~-~p~~~~~~~~~~~v~r~~~-----------a~~~~~p--g-~~~~r~~-~~~~~~~l~l 343 (418)
|.+ .++++.+.+++.|++. +|++++ .++...+. .|. +++...+ . ....||. ..++++|||+
T Consensus 387 ~~~-~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl 463 (502)
T TIGR02734 387 WSV-EGPRYRDRILAYLEERAIPGLRD-RIVVERTF-TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYL 463 (502)
T ss_pred cHH-HHHHHHHHHHHHHHHhcCCChhH-heEEEEEc-CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEE
Confidence 332 3567899999999998 999974 56555443 332 2222211 1 1123453 3578999999
Q ss_pred eccccccCCCccchHHHHHHHHHHHHHHHHHhCCCC
Q 014827 344 AGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 379 (418)
Q Consensus 344 aGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~~~ 379 (418)
||++++ +| +++.+|+.||+.||++|+++.+.+.
T Consensus 464 ~G~~~~--pG-~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 464 VGAGTH--PG-AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred eCCCCC--CC-CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 999953 44 5789999999999999999887543
No 18
>PLN02568 polyamine oxidase
Probab=99.86 E-value=6.4e-20 Score=185.29 Aligned_cols=296 Identities=14% Similarity=0.083 Sum_probs=191.3
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhh--------cCC----------Ccceeee
Q 014827 69 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--------HQK----------NFDLVWC 130 (418)
Q Consensus 69 ~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~--------~~~----------~~~~~~~ 130 (418)
+.|+++|++++ +++ .++.+.+|+..+++..++++.+...++..+..+... ... ......+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999984 544 577788899999999999998888777766553210 000 0012346
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHH------hhcccc
Q 014827 131 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE------LIKNSI 203 (418)
Q Consensus 131 ~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~------Ll~~~~ 203 (418)
.||+ +.|++.|++.+. +.+|++|++|++|..++ +.|. |++ +|+++.||+||+|+|+.++++ +...+.
T Consensus 238 ~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 238 AKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred CCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 7997 569999998874 45799999999999887 4453 555 677899999999999999985 233334
Q ss_pred cCChHHHHHhcCCCCccEEEEEEEeccCCCCCC-CC-----cceeccCCC-------ccceeeeccccccccCCCCCeEE
Q 014827 204 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-VS-----NACSGFGDS-------LAWTFFDLNKIYDEHKDDSATVI 270 (418)
Q Consensus 204 ~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~-~~-----~~~~~~~~~-------~~~~~~d~s~~~~~~~~~~~~~l 270 (418)
++ ....++++.+.+..+.++.+.|++++|... .. ..+...... ..+++.....+.+. ..+..++
T Consensus 312 LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vL 388 (539)
T PLN02568 312 LP-DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI--HKNSSVL 388 (539)
T ss_pred CC-HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc--CCCCCEE
Confidence 43 445678899999999999999999876421 00 000000000 00000000001110 1234455
Q ss_pred EEEeec--CCCCCCCCHHHHHHHHHHHHhhhhcCCCC---------------------ceeeeeeEEEcCCCc------c
Q 014827 271 QADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFST---------------------ATVMDHKIRRFPKSL------T 321 (418)
Q Consensus 271 ~~~~~~--~~~~~~~~~~el~~~~~~~L~~~~p~~~~---------------------~~~~~~~v~r~~~a~------~ 321 (418)
...+.+ +..+..++++++++.+++.|.++|+.... ..++...+++|...- .
T Consensus 389 ~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 389 LSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 544443 23466789999999999999999973211 135566667784322 2
Q ss_pred ccCCCCCCC-CCCCCCCC-------------CCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 322 HFFPGSYKY-MMRGFTSF-------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 322 ~~~pg~~~~-r~~~~~~~-------------~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
...||.... +..+..|+ ++|||||++++..+. ++|+||+.||+++|++|++..+
T Consensus 469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 223554321 11222333 379999999643332 8999999999999999999876
No 19
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.85 E-value=2.4e-20 Score=185.14 Aligned_cols=298 Identities=20% Similarity=0.160 Sum_probs=175.8
Q ss_pred HhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhh----cCCCcceeeecCCcchhhH
Q 014827 64 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIF 139 (418)
Q Consensus 64 ~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~----~~~~~~~~~~~gG~~~~l~ 139 (418)
+.....+++.+|+....+.+.....++.++....++..+...++......+...... ...........|++ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~ 212 (450)
T PF01593_consen 137 FLEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGL----S 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTT----H
T ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccch----h
Confidence 344556788888876656555444355666666665555566655322222211100 00111112233443 3
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCCCc
Q 014827 140 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 219 (418)
Q Consensus 140 ~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~ 219 (418)
..+...+...|++|++|++|++|..++ ++|+.+..+|++++||+||+|+|+..+..+.-.+.+ +....+.++.+++.
T Consensus 213 ~~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l-~~~~~~a~~~~~~~ 289 (450)
T PF01593_consen 213 LALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPL-PEDKRRAIENLPYS 289 (450)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTS-HHHHHHHHHTEEEE
T ss_pred HHHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhcccc-cccccccccccccC
Confidence 334444555678999999999999988 667644447889999999999999999962222122 13345677888898
Q ss_pred cEEEEEEEeccCCCCCCC-CcceeccCC-CccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHH
Q 014827 220 DVVSVKLWFDKKVTVPNV-SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSY 295 (418)
Q Consensus 220 ~~~~v~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~el~~~~~~~ 295 (418)
+..++++.++++.+.... ...+...+. .....+++.+...+. +++.++...+.. ...+.+++++++.+.++++
T Consensus 290 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 366 (450)
T PF01593_consen 290 SVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDD 366 (450)
T ss_dssp EEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHH
Confidence 888999999998875421 111111111 111112222221111 234444333332 1356778999999999999
Q ss_pred HhhhhcCCCCceeeeeeEEEcCC-CccccC-----CCCC-CCCCCCCCCC-CCEEEeccccccCCCccchHHHHHHHHHH
Q 014827 296 LSKCIKDFSTATVMDHKIRRFPK-SLTHFF-----PGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLEA 367 (418)
Q Consensus 296 L~~~~p~~~~~~~~~~~v~r~~~-a~~~~~-----pg~~-~~r~~~~~~~-~~l~laGd~~~~~~g~~~~egAi~SG~~a 367 (418)
|++++|.....++....+.+|.. .++... ++.. ..++...+++ +||||||||+.++++ ++++||+.||++|
T Consensus 367 L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~a 445 (450)
T PF01593_consen 367 LRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRRA 445 (450)
T ss_dssp HHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHHH
Confidence 99999952222455566777866 333222 2221 1233344677 699999999753333 6999999999999
Q ss_pred HHHHH
Q 014827 368 ANRVV 372 (418)
Q Consensus 368 A~~Il 372 (418)
|++||
T Consensus 446 A~~il 450 (450)
T PF01593_consen 446 AEEIL 450 (450)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99986
No 20
>PLN02676 polyamine oxidase
Probab=99.85 E-value=4.9e-20 Score=184.75 Aligned_cols=296 Identities=13% Similarity=0.115 Sum_probs=181.4
Q ss_pred hcCCccH--HHHHHHhCCCHHHHHHHHHHHHH-hhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeee-cCCcchhhHHH
Q 014827 66 KYDSITA--RELFKQFGCSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFEP 141 (418)
Q Consensus 66 ~~d~~s~--~e~l~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~-~gG~~~~l~~~ 141 (418)
..+++|+ .+++.+.. .........+-+.. ..++.+++++|+..+... ..+ ...++....+. +||+ +.|++.
T Consensus 155 ~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~g~~~~~~~~~~G~-~~l~~~ 229 (487)
T PLN02676 155 KAVDISILTAQRLFGQV-PKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDFGEDEYFVADPRGY-ESLVYY 229 (487)
T ss_pred CCCCccHHHHHHHHhhC-CCCHHHHHHHHHhccceeccCccccchhhcCcc-ccc--ccCCCceEEeecCCCH-HHHHHH
Confidence 3567887 55666532 11111222222221 125778888888654321 111 11111122221 5787 569999
Q ss_pred HHHHHHhc------CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHH--hhcccccCChHHHHH
Q 014827 142 WMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLK 212 (418)
Q Consensus 142 l~~~l~~~------G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~--Ll~~~~~~~~~~~~~ 212 (418)
|++.+.+. +.+|++|++|++|..+++ + |+ |.+ +|+++.||+||+|+|+..+.. +...+.++ ....+.
T Consensus 230 La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~-g-V~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~a 305 (487)
T PLN02676 230 LAEQFLSTKSGKITDPRLKLNKVVREISYSKN-G-VT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIEA 305 (487)
T ss_pred HHhhcccccccccCCCceecCCEeeEEEEcCC-c-EE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHHH
Confidence 99877433 357999999999998874 4 64 666 567899999999999999975 54444553 444567
Q ss_pred hcCCCCccEEEEEEEeccCCCCCCCCcceeccCC-Ccc-ceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHH
Q 014827 213 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-SLA-WTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQV 288 (418)
Q Consensus 213 l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~el 288 (418)
++++.+....++.+.|++++|.......++.... ..+ +.++.. ..... ++..++.+.+.+ +..+..+++++.
T Consensus 306 i~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~~~~~g~~a~~~~~~s~e~~ 381 (487)
T PLN02676 306 IYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH--LENEY--PGSNVLFVTVTDEESRRIEQQPDSET 381 (487)
T ss_pred HHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh--cccCC--CCCCEEEEEechHHHHHHHhCCHHHH
Confidence 8889999999999999999884311111111110 000 001100 00111 233444443332 234567889999
Q ss_pred HHHHHHHHhhhhcCCCCceeeeeeEEEcCCCc------cccCCCCCCC-CCCCCCCCCCEEEeccccccCCCc-cchHHH
Q 014827 289 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYKY-MMRGFTSFPNLFMAGDWITTRHGS-WSQERS 360 (418)
Q Consensus 289 ~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~------~~~~pg~~~~-r~~~~~~~~~l~laGd~~~~~~g~-~~~egA 360 (418)
.+.+++.|.++||... ..++....++|.... ..+.||+... .+....|+++|||||+++. ..+ ++||||
T Consensus 382 ~~~vl~~L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts--~~~~g~~eGA 458 (487)
T PLN02676 382 KAEIMEVLRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTS--EKYNGYVHGA 458 (487)
T ss_pred HHHHHHHHHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccc--cccccchHHH
Confidence 9999999999997422 245566666775432 2334564322 2334568899999999964 444 899999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 014827 361 YVTGLEAANRVVDYLGD 377 (418)
Q Consensus 361 i~SG~~aA~~Il~~~~~ 377 (418)
+.||++||++|++.++.
T Consensus 459 ~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 459 YLAGIDTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998875
No 21
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.85 E-value=4.1e-19 Score=179.54 Aligned_cols=294 Identities=16% Similarity=0.145 Sum_probs=182.7
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHH
Q 014827 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR 147 (418)
Q Consensus 68 d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~ 147 (418)
...|+.++++++..++. ++.++...+......++.+.++......+.... .....++.||+ ..|+++|++.++
T Consensus 168 ~~~s~~~~~~~~~~~~~-l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~-----~~g~~~~~gG~-~~l~~~L~~~~~ 240 (493)
T TIGR02730 168 LPQNAGDIARRYIRDPG-LLKFIDIECFCWSVVPADQTPMINAGMVFSDRH-----YGGINYPKGGV-GQIAESLVKGLE 240 (493)
T ss_pred hhccHHHHHHHhcCCHH-HHHHHHHHHHhccCCCcccchhhhHHHhhcccc-----cceEecCCChH-HHHHHHHHHHHH
Confidence 45899999999866666 566666433222223446676654443332111 12236788997 569999999999
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhhcccccCChHHHHHhcCCCCc-cEEEE
Q 014827 148 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLASI-DVVSV 224 (418)
Q Consensus 148 ~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll~~~~~~~~~~~~~l~~l~~~-~~~~v 224 (418)
++|++|+++++|++|..++ +++++|++ +|++++||.||+|++++.+ .+|++....+ ......++++++. +.+++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEEE
Confidence 9999999999999999876 66788888 5678999999999988765 5687765332 2233344555543 57889
Q ss_pred EEEeccCCCCC--CCCcceec-cC---CCccceeee-ccccccccCCCCCeEEEEEee-cCCCCCC-------CCHHHHH
Q 014827 225 KLWFDKKVTVP--NVSNACSG-FG---DSLAWTFFD-LNKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQVV 289 (418)
Q Consensus 225 ~l~~~~~~~~~--~~~~~~~~-~~---~~~~~~~~d-~s~~~~~~~~~~~~~l~~~~~-~~~~~~~-------~~~~el~ 289 (418)
++.+++..... ..++.++. +. ......+.. .+...+..++++.+++.+... ....|.+ ..++++.
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~ 397 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA 397 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence 99998754211 11222211 10 011111111 122334555556666544321 1112321 1356688
Q ss_pred HHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccC--C-CCC----------CCC-CCCCCCCCCEEEeccccccCCCcc
Q 014827 290 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--P-GSY----------KYM-MRGFTSFPNLFMAGDWITTRHGSW 355 (418)
Q Consensus 290 ~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~--p-g~~----------~~r-~~~~~~~~~l~laGd~~~~~~g~~ 355 (418)
+.+++.|++++|++++ .++...+. .|..+-.|. + |.+ ..+ |..+++++|||+||++++ +| +
T Consensus 398 ~~il~~l~~~~p~l~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~--pG-~ 472 (493)
T TIGR02730 398 ERIIDRLEKIFPGLDS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCF--PG-Q 472 (493)
T ss_pred HHHHHHHHHHCCChhh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCC--CC-C
Confidence 9999999999999975 56555443 443331111 0 111 011 345689999999999953 44 5
Q ss_pred chHHHHHHHHHHHHHHHHHhC
Q 014827 356 SQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 356 ~~egAi~SG~~aA~~Il~~~~ 376 (418)
++.+|+.||+.||+.|+++++
T Consensus 473 Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 473 GLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred CHHHHHHHHHHHHHHHHhhcC
Confidence 889999999999999998653
No 22
>PLN03000 amine oxidase
Probab=99.85 E-value=2.2e-19 Score=185.65 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=156.6
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHH--HhhcccccC
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILC 205 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~--~Ll~~~~~~ 205 (418)
....||+ ++|+++|++.+ .|++|++|++|..+++ + | .|++++++++||+||+|+|+.+++ .+...+.++
T Consensus 374 ~~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~d-g-V-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP 444 (881)
T PLN03000 374 CFLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGSN-G-V-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELP 444 (881)
T ss_pred EEeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECCC-e-E-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCC
Confidence 3467997 56999998766 4999999999998873 3 5 466777789999999999999998 344344442
Q ss_pred ChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCC------CccceeeeccccccccCCCCCeEEEEEeec--C
Q 014827 206 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD------SLAWTFFDLNKIYDEHKDDSATVIQADFYH--A 277 (418)
Q Consensus 206 ~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~s~~~~~~~~~~~~~l~~~~~~--~ 277 (418)
....++++++++..+.+|.+.|++++|... .. .+|... ...+.+++.+ + ..++.++.....+ +
T Consensus 445 -~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d-~~-~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~A 515 (881)
T PLN03000 445 -QRKLDCIKRLGFGLLNKVAMLFPYVFWSTD-LD-TFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEAA 515 (881)
T ss_pred -HHHHHHHHcCCCcceEEEEEEeCCccccCC-CC-ceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCchh
Confidence 445678999999999999999999987432 11 222210 1111122211 1 0234444433332 2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhcC--CCCceeeeeeEEEcCCCc------cccCCCCCC-CCCCCCCCC--CCEEEecc
Q 014827 278 NELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSL------THFFPGSYK-YMMRGFTSF--PNLFMAGD 346 (418)
Q Consensus 278 ~~~~~~~~~el~~~~~~~L~~~~p~--~~~~~~~~~~v~r~~~a~------~~~~pg~~~-~r~~~~~~~--~~l~laGd 346 (418)
..+..++++++++.++++|+++|+. .....++...+++|...- ..+.||... .......|+ ++|||||+
T Consensus 516 ~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGE 595 (881)
T PLN03000 516 HKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGE 595 (881)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeeh
Confidence 4567789999999999999999963 211245677788886442 223345332 122223454 58999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 347 WITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 347 ~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
++...++ ++|+||+.||.+||++|++.+..
T Consensus 596 aTs~~~~-GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 596 ATTRRYP-ATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred HHhCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence 9643333 89999999999999999998864
No 23
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.84 E-value=9.9e-20 Score=169.89 Aligned_cols=290 Identities=13% Similarity=0.155 Sum_probs=205.0
Q ss_pred hcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHh--------------hc----------
Q 014827 66 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AH---------- 121 (418)
Q Consensus 66 ~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~--------------~~---------- 121 (418)
+..|+|+++|++| +|++++.+++++||+.|+|++|++++|+...+.-++.... +.
T Consensus 152 ~~~dESV~sF~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~ 230 (491)
T KOG1276|consen 152 PSADESVESFARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETAL 230 (491)
T ss_pred CCccccHHHHHHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchh
Confidence 4689999999999 5899999999999999999999999999988876654310 00
Q ss_pred -----CCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CCe-EEecCEEEEccCh
Q 014827 122 -----QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGI 192 (418)
Q Consensus 122 -----~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~-~~~ad~VV~A~p~ 192 (418)
.+.......+||+ +.+++++.+.|.+.++.|.++-++..+..... |+ |.+.+ ++. .+..++++.|+|+
T Consensus 231 ~~~~~~e~~~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~-~~~tl~~~~~~~~~~~~~~~~t~~~ 307 (491)
T KOG1276|consen 231 SAQAKKEKWTMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRS-GN-WSLTLVDHSGTQRVVVSYDAATLPA 307 (491)
T ss_pred hhhhcccccchhhhhhhH-hHhHHHHHHHhcccchhhhccccccccccccc-CC-ceeEeEcCCCceeeeccccccccch
Confidence 0012223467998 67999999999998899999999999876654 43 34444 333 4567777889999
Q ss_pred hhHHHhhcccccCChHHHHHhcCCCCccEEEEEEEeccC-CCCC-CCCcceeccC-----CCccceeeeccccccccCCC
Q 014827 193 STLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVP-NVSNACSGFG-----DSLAWTFFDLNKIYDEHKDD 265 (418)
Q Consensus 193 ~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~-~~~~-~~~~~~~~~~-----~~~~~~~~d~s~~~~~~~~~ 265 (418)
..+.++++... +.....+.++.|.++..|.+.|.++ ...+ ..++.+.... ..++ ++||.... +...+
T Consensus 308 ~k~a~ll~~~~---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifdS~~F-p~~~~- 381 (491)
T KOG1276|consen 308 VKLAKLLRGLQ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFDSMLF-PDRSP- 381 (491)
T ss_pred HHhhhhccccc---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEeecccC-CCCCC-
Confidence 99999998763 3445678889999999999999764 2211 2333333211 1233 36874433 33222
Q ss_pred CCeEEEEEee----cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCC-----C
Q 014827 266 SATVIQADFY----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-----T 336 (418)
Q Consensus 266 ~~~~l~~~~~----~~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~-----~ 336 (418)
...+ .++.+ ........+.+|+++.+.++|++++..-. .+....++-|+..+|+|..||.......+ .
T Consensus 382 s~~v-tvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~ 458 (491)
T KOG1276|consen 382 SPKV-TVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDS 458 (491)
T ss_pred CceE-EEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHHHHHHHhC
Confidence 2222 22222 12233456899999999999999998654 35566666799999999999986533221 2
Q ss_pred CCCCEEEeccccccCCCccchHHHHHHHHHHHHHHH
Q 014827 337 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 337 ~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il 372 (418)
+..+|++||.|+ .| -++..||+||+.+|.+++
T Consensus 459 ~g~~l~l~G~~y---~G-v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 459 PGLGLFLGGNHY---GG-VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred CCCceEeecccc---CC-CChhHHHHhhHHHHHhhc
Confidence 346899999996 23 378999999999998875
No 24
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.83 E-value=9.4e-19 Score=181.20 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=154.5
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHH--hhcccccC
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILC 205 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~--Ll~~~~~~ 205 (418)
....||+ ++|+++|++.+ .|++|++|++|..+++ | | .|..+|+++.||+||+|+|+.++.+ +...+.++
T Consensus 430 ~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~d-g-V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP 500 (808)
T PLN02328 430 CFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVD-G-V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELP 500 (808)
T ss_pred EEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCC-e-E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence 4567997 57999998765 3999999999999774 4 4 3556788999999999999999974 32223342
Q ss_pred ChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccC---C-Ccc-c-eeeeccccccccCCCCCeEEEEEeec--C
Q 014827 206 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---D-SLA-W-TFFDLNKIYDEHKDDSATVIQADFYH--A 277 (418)
Q Consensus 206 ~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~-~~~-~-~~~d~s~~~~~~~~~~~~~l~~~~~~--~ 277 (418)
....+++++++|.++.+|.+.|++++|... .. .+|.. . ..+ + .+++.+. . .++.++.....+ +
T Consensus 501 -~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~-~d-~fG~l~~d~s~rG~~~lf~s~s~-----~-~G~~vLvafv~G~~A 571 (808)
T PLN02328 501 -QRKKDAIQRLGYGLLNKVALLFPYNFWGGE-ID-TFGHLTEDPSMRGEFFLFYSYSS-----V-SGGPLLIALVAGDAA 571 (808)
T ss_pred -HHHHHHHHcCCCcceEEEEEEeCCccccCC-CC-ceEEEeecCCCCceEEEEecCCC-----C-CCCcEEEEEecChhh
Confidence 455678999999999999999999887422 11 12211 0 111 1 1122111 1 244554443332 2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhcC--CCCceeeeeeEEEcCCCccc------cCCCCCC-CCCCCCCCC--CCEEEecc
Q 014827 278 NELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTSF--PNLFMAGD 346 (418)
Q Consensus 278 ~~~~~~~~~el~~~~~~~L~~~~p~--~~~~~~~~~~v~r~~~a~~~------~~pg~~~-~r~~~~~~~--~~l~laGd 346 (418)
..+..++++++++.+++.|+++|+. .....++...+++|....+. +.+|... ..+....++ ++|||||+
T Consensus 572 ~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGE 651 (808)
T PLN02328 572 VKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGE 651 (808)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEh
Confidence 3466789999999999999999963 11124667778889765433 2344321 112223343 58999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 347 WITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 347 ~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++...++ ++|+||+.||.+||++|++.+.
T Consensus 652 aTs~~~~-GtVhGAi~SGlRAA~eIl~~~~ 680 (808)
T PLN02328 652 ATNKQYP-ATMHGAFLSGMREAANILRVAR 680 (808)
T ss_pred hHhCCCC-eEhHHHHHHHHHHHHHHHHHHh
Confidence 9743333 7999999999999999999876
No 25
>PLN02976 amine oxidase
Probab=99.83 E-value=2.8e-19 Score=189.67 Aligned_cols=260 Identities=17% Similarity=0.136 Sum_probs=166.9
Q ss_pred cCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecC--------CCCe
Q 014827 99 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCC 170 (418)
Q Consensus 99 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~--------~~g~ 170 (418)
+.+++++|+..+..- ..+ ..-++ ....+.||+ +.|+++|++.+ .|++|++|++|...+ +++.
T Consensus 904 aa~L~eVSl~~~~qd-~~y--~~fgG-~~~rIkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG 973 (1713)
T PLN02976 904 AALLKEVSLPYWNQD-DVY--GGFGG-AHCMIKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK 973 (1713)
T ss_pred cCCHHHhhhhhhhcc-ccc--ccCCC-ceEEeCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc
Confidence 567888888643210 001 11011 123467997 46999998754 499999999999842 0133
Q ss_pred EEEEEE-CCeEEecCEEEEccChhhHH--HhhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCC-
Q 014827 171 ISDVVC-GKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD- 246 (418)
Q Consensus 171 v~~v~~-~g~~~~ad~VV~A~p~~~~~--~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~- 246 (418)
|. |++ +|+++.||+||+|+|+.++. .+...+.++ ....++|..+.+....++.|.|++++|... .. ++|...
T Consensus 974 Vt-VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d-~d-~FG~s~e 1049 (1713)
T PLN02976 974 VK-VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDDS-VD-YFGATAE 1049 (1713)
T ss_pred EE-EEECCCCEEEeceEEEeCCHHHhhhcccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccCC-CC-ccccccc
Confidence 53 555 67789999999999999987 344444453 344567899999999999999999887432 11 223211
Q ss_pred ---Ccc--ceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCC
Q 014827 247 ---SLA--WTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 319 (418)
Q Consensus 247 ---~~~--~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a 319 (418)
..+ +.+++.. ...+..++...+.+ +..+..++++++++.+++.|.++||......++...+++|...
T Consensus 1050 dtdlrG~~~~~wnlr------~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1050 ETDLRGQCFMFWNVK------KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred cCCCCceEEEeccCC------CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 011 1112211 11233454443433 2345678999999999999999998532235677778888543
Q ss_pred cc------ccCCCCCC-CCCCCCCCCCC-EEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCCCC
Q 014827 320 LT------HFFPGSYK-YMMRGFTSFPN-LFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 379 (418)
Q Consensus 320 ~~------~~~pg~~~-~r~~~~~~~~~-l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~~~ 379 (418)
.+ ...||... .+..+..|+.| |||||+++...++ ++|+||+.||.+||++|+..+..+.
T Consensus 1124 PySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G~ 1190 (1713)
T PLN02976 1124 PFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTGN 1190 (1713)
T ss_pred CCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHccC
Confidence 21 22355432 12223456666 9999999653333 8999999999999999999987543
No 26
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.82 E-value=8.3e-19 Score=166.55 Aligned_cols=230 Identities=15% Similarity=0.157 Sum_probs=160.5
Q ss_pred ecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC-eEEecCEEEEccChhhHHHhhcccccCChH
Q 014827 130 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNRE 208 (418)
Q Consensus 130 ~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~ 208 (418)
+.||| +.|++++++.+ |..|+++++|.+|.++++ | |+ |+++. +++.+|.||||+|+.++.++--.+.+ +..
T Consensus 204 ~~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~~-g-V~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~~ 275 (450)
T COG1231 204 RLGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDGD-G-VT-VTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PAE 275 (450)
T ss_pred cCccH-HHHHHHHHHHh---hceEEecCceeeEEEcCC-e-EE-EEeCCcceEEecEEEEecCHHHHhhcccCCCC-CHH
Confidence 34997 57999998766 568999999999999884 4 65 77766 89999999999999999988666544 356
Q ss_pred HHHHhcCCCCccEEEEEEEeccCCCCCCCCcceecc---CCCccceeeeccccccccCCCCCeEEEEEee---cCCCCCC
Q 014827 209 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMP 282 (418)
Q Consensus 209 ~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~s~~~~~~~~~~~~~l~~~~~---~~~~~~~ 282 (418)
+.+.++.+.|.+..++.+.|++++|.+.. .+.|. +..... +...++ .+. ++..|+...|. .+..|..
T Consensus 276 ~~~a~~~~~y~~~~K~~v~f~rpFWee~~--~l~G~~~tD~~~~~-i~~~s~---~~~-~G~gVl~g~~~~g~~A~~~~~ 348 (450)
T COG1231 276 YKQAAKGVPYGSATKIGVAFSRPFWEEAG--ILGGESLTDLGLGF-ISYPSA---PFA-DGPGVLLGSYAFGDDALVIDA 348 (450)
T ss_pred HHHHhcCcCcchheeeeeecCchhhhhcc--cCCceEeecCCcce-EecCcc---ccC-CCceEEEeeeeccccceeEec
Confidence 66778889999999999999999985443 12221 112111 111121 111 34444433232 2345788
Q ss_pred CCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCc------cccCCCCCC-CCCCCCCCCCCEEEec-cccccCCCc
Q 014827 283 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYK-YMMRGFTSFPNLFMAG-DWITTRHGS 354 (418)
Q Consensus 283 ~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~------~~~~pg~~~-~r~~~~~~~~~l~laG-d~~~~~~g~ 354 (418)
+++++.++.++..+.++||+...........++|.... ..+.||+.. .-+.+..+.++||||| ++. +..+
T Consensus 349 ~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEha-s~~~- 426 (450)
T COG1231 349 LPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHA-SEFG- 426 (450)
T ss_pred CCHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccc-cccc-
Confidence 99999999999999999995443334443556675432 234455543 2344556889999999 553 3444
Q ss_pred cchHHHHHHHHHHHHHHHHHhC
Q 014827 355 WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 355 ~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|++|||++||.+||.+|...+.
T Consensus 427 Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 427 GWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred chhHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999998765
No 27
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.69 E-value=9e-15 Score=137.59 Aligned_cols=239 Identities=15% Similarity=0.105 Sum_probs=149.9
Q ss_pred cceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhhccc
Q 014827 125 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNS 202 (418)
Q Consensus 125 ~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll~~~ 202 (418)
..+.||.|||+ .+.+++++.++++|++|.+++.|++|..++ |++.+|.+ +|.++.+..||+++.++.+ .+|++..
T Consensus 254 g~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e 330 (561)
T KOG4254|consen 254 GGWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGE 330 (561)
T ss_pred CcccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCc
Confidence 45689999987 599999999999999999999999999988 89999999 6888999999999999887 4999988
Q ss_pred ccCChHHHHHhcCCCCc-cEEE----EEEEeccCCCCCCCCccee---ccC-----------------CCccceeee-cc
Q 014827 203 ILCNREEFLKVLNLASI-DVVS----VKLWFDKKVTVPNVSNACS---GFG-----------------DSLAWTFFD-LN 256 (418)
Q Consensus 203 ~~~~~~~~~~l~~l~~~-~~~~----v~l~~~~~~~~~~~~~~~~---~~~-----------------~~~~~~~~d-~s 256 (418)
.++ .++ .++++.+. ++.+ ..+........+.|+..+. ..+ .......+. .|
T Consensus 331 ~LP-eef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS 407 (561)
T KOG4254|consen 331 ALP-EEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS 407 (561)
T ss_pred cCC-chh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence 664 333 44444442 2221 2222221111111211110 000 001111111 13
Q ss_pred ccccccCCCCCeEEEEEe-ecCCCCCC-------CCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccc------
Q 014827 257 KIYDEHKDDSATVIQADF-YHANELMP-------LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH------ 322 (418)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~-~~~~~~~~-------~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~------ 322 (418)
.+.+.+.+++++++.+.. |...+|.+ .-+++..+++++.+++++|++.. .++...+- .|.....
T Consensus 408 ~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvg-TP~t~qr~l~~~~ 485 (561)
T KOG4254|consen 408 SLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVG-TPPTHQRFLGRPG 485 (561)
T ss_pred ccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecC-CCchhhHHhcCCC
Confidence 455667777888875532 22233333 34577889999999999999986 46554443 2221110
Q ss_pred --cCC---CCC---CCCCCC-----CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 323 --FFP---GSY---KYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 323 --~~p---g~~---~~r~~~-----~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
+.+ +.. -.+|.. ++|++|||+|||.++++ +++-+|. |+.+|...+.+.+
T Consensus 486 Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG---gGV~a~a--G~~~A~~a~~~~~ 547 (561)
T KOG4254|consen 486 GNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG---GGVMAAA--GRLAAHSAILDRK 547 (561)
T ss_pred CcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC---CCccccc--hhHHHHHHhhhhh
Confidence 111 111 124544 68999999999996543 3444443 8888888776654
No 28
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.64 E-value=4.6e-16 Score=137.37 Aligned_cols=220 Identities=16% Similarity=0.103 Sum_probs=151.0
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC-eEEecCEEEEccChhhHHHhhccc--ccCCh
Q 014827 132 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQELIKNS--ILCNR 207 (418)
Q Consensus 132 gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g-~~~~ad~VV~A~p~~~~~~Ll~~~--~~~~~ 207 (418)
-||+ +|++.|+. ..+|.++++|++|...+ + .|.+++ +| +...+|.||+|+|++++..|+... .+ +.
T Consensus 105 pgms-alak~LAt-----dL~V~~~~rVt~v~~~~--~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~-p~ 174 (331)
T COG3380 105 PGMS-ALAKFLAT-----DLTVVLETRVTEVARTD--N-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDL-PA 174 (331)
T ss_pred cchH-HHHHHHhc-----cchhhhhhhhhhheecC--C-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccc-hH
Confidence 4664 57766654 35799999999999986 4 377888 33 468999999999999999998642 22 24
Q ss_pred HHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCH
Q 014827 208 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKD 285 (418)
Q Consensus 208 ~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 285 (418)
.++..+..+.|.|++++.+.|.++...+.+. ++-.+..++|.-.|.++ +... +.+..+.+...+ ++...+.++
T Consensus 175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~ 249 (331)
T COG3380 175 ALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPA 249 (331)
T ss_pred HHHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCH
Confidence 4667889999999999999998776543332 22223356775444332 2222 233333333322 234566788
Q ss_pred HHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCC-CCCCCEEEeccccccCCCccchHHHHHHH
Q 014827 286 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTG 364 (418)
Q Consensus 286 ~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~-~~~~~l~laGd~~~~~~g~~~~egAi~SG 364 (418)
++.+..+......+.+..- .++....+++|+++.|....+.. .+. ..-.+||+||||++ | +-+|||..||
T Consensus 250 e~~i~~l~aA~~~~~~~~~-~~p~~s~~H~WrYA~P~~~~~~~----~L~ad~~~~l~~cGDwc~---G-grVEgA~LSG 320 (331)
T COG3380 250 EQVIVALRAAAQELDGDRL-PEPDWSDAHRWRYAIPNDAVAGP----PLDADRELPLYACGDWCA---G-GRVEGAVLSG 320 (331)
T ss_pred HHHHHHHHHhhhhccCCCC-CcchHHHhhccccccccccccCC----ccccCCCCceeeeccccc---C-cchhHHHhcc
Confidence 8888778788888887433 25677788999999887654432 121 34468999999962 3 4799999999
Q ss_pred HHHHHHHHHHh
Q 014827 365 LEAANRVVDYL 375 (418)
Q Consensus 365 ~~aA~~Il~~~ 375 (418)
..+|++|++.+
T Consensus 321 lAaA~~i~~~L 331 (331)
T COG3380 321 LAAADHILNGL 331 (331)
T ss_pred HHHHHHHHhcC
Confidence 99999998753
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=2.5e-14 Score=142.43 Aligned_cols=230 Identities=22% Similarity=0.237 Sum_probs=154.8
Q ss_pred eecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHH--hhcccccC
Q 014827 129 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILC 205 (418)
Q Consensus 129 ~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~--Ll~~~~~~ 205 (418)
...+|+. .++..++. |..|+++..|.+|...++ +.+ .++. ++..+.+|+||+++|..++.. +...+.++
T Consensus 213 ~~~~G~~-~v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 213 LMKGGYE-PVVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred HhhCCcc-HHHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 3468864 47666654 889999999999999886 542 3443 445599999999999999976 44444442
Q ss_pred ChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcceeccCCC---ccc--eeeeccccccccCCCCCeEEEEEeec--CC
Q 014827 206 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS---LAW--TFFDLNKIYDEHKDDSATVIQADFYH--AN 278 (418)
Q Consensus 206 ~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~--~~~d~s~~~~~~~~~~~~~l~~~~~~--~~ 278 (418)
....++|++++...+.++.+.|++.+|... ..+++.... ..+ .+++.. +.. +..++.....+ +.
T Consensus 285 -~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~--~d~fg~~~~~~~~~~~~~f~~~~---~~~---~~~~l~~~~~~~~a~ 355 (501)
T KOG0029|consen 285 -RWKQEAIDRLGFGLVNKVILEFPRVFWDQD--IDFFGIVPETSVLRGLFTFYDCK---PVA---GHPVLMSVVVGEAAE 355 (501)
T ss_pred -HHHHHHHHhcCCCceeEEEEEeccccCCCC--cCeEEEccccccccchhhhhhcC---ccC---CCCeEEEEehhhhhH
Confidence 455678999999999999999999998422 123333211 111 122222 211 22233332322 34
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCcc------ccCCCCCCCC-CCCCCCCCC-EEEecccccc
Q 014827 279 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSYKYM-MRGFTSFPN-LFMAGDWITT 350 (418)
Q Consensus 279 ~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~------~~~pg~~~~r-~~~~~~~~~-l~laGd~~~~ 350 (418)
.+..++++++++.++..|+++|+......+++..+.+|..... .+.++..... ..+..++.| +||||+++..
T Consensus 356 ~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~ 435 (501)
T KOG0029|consen 356 RVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSR 435 (501)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcc
Confidence 5778999999999999999999943334677778888854321 1222221111 223467777 9999999754
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 351 RHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 351 ~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+. ++|+||..||.+||..|+..+.
T Consensus 436 ~~~-~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 436 KYP-GTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred cCC-CchHHHHHhhHHHHHHHHHHHH
Confidence 444 8999999999999999999876
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=1.6e-13 Score=138.16 Aligned_cols=287 Identities=13% Similarity=0.057 Sum_probs=156.9
Q ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHHH
Q 014827 67 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 146 (418)
Q Consensus 67 ~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l 146 (418)
....++.++++.. +..+.++.++.....-.. .+|.+.+ .+..++... .. ...+.+|+|||+ .|+++|++.+
T Consensus 164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~~~~~~--~~--~~G~~~p~GG~~-al~~aL~~~~ 234 (487)
T COG1233 164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP--ALYLLLSHL--GL--SGGVFYPRGGMG-ALVDALAELA 234 (487)
T ss_pred HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh--HHHHHHHHh--cc--cCCeeeeeCCHH-HHHHHHHHHH
Confidence 4567888888887 665556666654322122 5565655 222233222 21 223478999985 6999999999
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEEC-CeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCCC-CccEEEE
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA-SIDVVSV 224 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~-~~~~~~v 224 (418)
+++|++|+++++|++|..++ |+.++++.. |+.+++|.||+++.+.....+.+.... .+...... .......
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~al~~ 307 (487)
T COG1233 235 REHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR-----PRYRGSYLKSLSALSL 307 (487)
T ss_pred HHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh-----hccccchhhhhHHHHh
Confidence 99999999999999999988 654456654 458899999999999555555544210 00111111 1223334
Q ss_pred EEEeccCCCCCCCCcceeccCC------C----cc---ce-eeeccccccccCCCCCeEEEEEeecC--CCCCCCCHHHH
Q 014827 225 KLWFDKKVTVPNVSNACSGFGD------S----LA---WT-FFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQV 288 (418)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~~~------~----~~---~~-~~d~s~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~el 288 (418)
++.++........++.++..+. . .+ +. +.-.+...+..+|.+++.+...+... ..+.+..++++
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~ 387 (487)
T COG1233 308 YLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESL 387 (487)
T ss_pred ccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHH
Confidence 4444442110111111111110 0 00 11 11223334455544544211222211 12222334455
Q ss_pred HHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccC--------------CCCCCCCCCC-CCCCCCEEEeccccccCCC
Q 014827 289 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--------------PGSYKYMMRG-FTSFPNLFMAGDWITTRHG 353 (418)
Q Consensus 289 ~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~--------------pg~~~~r~~~-~~~~~~l~laGd~~~~~~g 353 (418)
.+. ...++++.|++++ .++...+. .|.....+. .+....||.. .++++|||+||++++ +|
T Consensus 388 ~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~--PG 462 (487)
T COG1233 388 ADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTH--PG 462 (487)
T ss_pred HHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCC--CC
Confidence 555 6689999999985 45555444 332221110 1111234544 489999999999954 55
Q ss_pred ccchHHHHHHHHHHHHHHHHHh
Q 014827 354 SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 354 ~~~~egAi~SG~~aA~~Il~~~ 375 (418)
+++.++..++..++..+....
T Consensus 463 -~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 463 -GGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred -CCcchhhhhHHHHHhhhcccc
Confidence 567777666766666555443
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=125.58 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=121.1
Q ss_pred hHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcC-----CCcceeeecCCcch
Q 014827 62 VAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-----KNFDLVWCRGTLRE 136 (418)
Q Consensus 62 ~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~-----~~~~~~~~~gG~~~ 136 (418)
.+.....++|+++||+++++++.+.+.++.||..++++++..+++..-+..+++++ ..++ +...+....|| +.
T Consensus 143 ~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~-~nhGll~l~~rp~wrtV~gg-S~ 220 (447)
T COG2907 143 SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT-DNHGLLYLPKRPTWRTVAGG-SR 220 (447)
T ss_pred hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH-hccCceecCCCCceeEcccc-hH
Confidence 34456789999999999999999999999999999999999998876655555433 1221 11223445677 56
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcCC
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 216 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l 216 (418)
..+++|++.+ +++|.++++|..|..-.+ | |+.+..+|++..+|+||+|+.++++..|++++. +++.+.+..+
T Consensus 221 ~yvq~laa~~---~~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p~e~qll~a~ 292 (447)
T COG2907 221 AYVQRLAADI---RGRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS---PEERQLLGAL 292 (447)
T ss_pred HHHHHHhccc---cceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC---HHHHHHHHhh
Confidence 7888887655 578999999999998886 6 444445799999999999999999999998863 5666778888
Q ss_pred CCccEEEEEEEeccCCC
Q 014827 217 ASIDVVSVKLWFDKKVT 233 (418)
Q Consensus 217 ~~~~~~~v~l~~~~~~~ 233 (418)
.|+....| +.-|..+.
T Consensus 293 ~Ys~n~aV-lhtd~~lm 308 (447)
T COG2907 293 RYSANTAV-LHTDASLM 308 (447)
T ss_pred hhhhceeE-Eeeccccc
Confidence 88754433 33455444
No 32
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.53 E-value=3.4e-13 Score=128.52 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=149.8
Q ss_pred eeecCCcchhhHHHHHHHHHh----cC--cEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHH---
Q 014827 128 VWCRGTLREKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--- 197 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~----~G--~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~--- 197 (418)
.+..-|+ ..+.+.|++.+.+ .| .+|+++++|.+|..++. ++|. |++ +|+.+.||+||||++..++++
T Consensus 216 ~~~~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 216 IWNKKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEVK-LRCSDGEVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred eechhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcEE-EEEeCCcEEeccEEEEEeechhhhhhhh
Confidence 3444565 4588888876543 22 45677799999999865 6664 666 788999999999999999976
Q ss_pred -hhcccccCChHHHHHhcCCCCccEEEEEEEeccCCCCCCCCcce--eccCCC-------c-cceeeeccccccccCCCC
Q 014827 198 -LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDS-------L-AWTFFDLNKIYDEHKDDS 266 (418)
Q Consensus 198 -Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~-------~-~~~~~d~s~~~~~~~~~~ 266 (418)
|+.++ +| ....++|+++.+..+.+++|-|.++++++ .++.+ .-.+.. . .| .-+...+.+.. ..
T Consensus 293 ~lF~P~-LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~-~~~~i~~lw~~e~l~e~r~~~~~w-~~~~~~f~~v~--~~ 366 (498)
T KOG0685|consen 293 KLFVPP-LP-AEKQRAIERLGFGTVNKIFLEFEEPFWPS-DWNGIQLLWLDEDLEELRSTLDAW-EEDIMGFQPVS--WA 366 (498)
T ss_pred hhcCCC-CC-HHHHHHHHhccCCccceEEEEccCCCCCC-CCceeEEEEecCcHHHHhhhhHHH-HhhceEEEEcC--cc
Confidence 54443 42 45567999999999999999999998843 22211 111111 0 01 00000011110 12
Q ss_pred CeEEEEEeec--CCCCCCCCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCC------CccccCCCCCCC--------
Q 014827 267 ATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK------SLTHFFPGSYKY-------- 330 (418)
Q Consensus 267 ~~~l~~~~~~--~~~~~~~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~------a~~~~~pg~~~~-------- 330 (418)
..++...+.+ +..+..++|+++.+.+...|++++++..-+.+....-.+|.. ++....+|+...
T Consensus 367 ~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p 446 (498)
T KOG0685|consen 367 PNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALP 446 (498)
T ss_pred hhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhcc
Confidence 2555555543 234677999999999999999999865432333222223422 221122332211
Q ss_pred CCC-CCCCCCCEEEeccccccCCCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 331 MMR-GFTSFPNLFMAGDWITTRHGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 331 r~~-~~~~~~~l~laGd~~~~~~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.|. ..++-+.|.|||++++ ... .++.||+.||++.|++++....
T Consensus 447 ~p~~~~~~~p~I~FAGEaTh--r~~YsTthGA~~SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 447 LPLTLVTGRPQILFAGEATH--RTFYSTTHGAVLSGWREADRLLEHYE 492 (498)
T ss_pred CCccccCCCceEEEcccccc--ccceehhhhhHHhhHHHHHHHHHHHH
Confidence 111 1235578999999964 333 8999999999999999998655
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.40 E-value=1e-10 Score=116.90 Aligned_cols=301 Identities=13% Similarity=0.123 Sum_probs=168.8
Q ss_pred hhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHh---hcCCCcceeeecCCcchhhHHH
Q 014827 65 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFEP 141 (418)
Q Consensus 65 ~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~---~~~~~~~~~~~~gG~~~~l~~~ 141 (418)
+++++.|+.||++++++.. ....+|..+ |+ -.+..||..+.+++++++. +-.....+.+.+....++|+.+
T Consensus 158 ~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t~----Fa-F~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~P 231 (576)
T PRK13977 158 EKLDDKTIEDWFSPEFFET-NFWYYWRTM----FA-FEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLP 231 (576)
T ss_pred HHhCCcCHHHHHhhcCchh-HHHHHHHHH----HC-CchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHH
Confidence 4699999999999977754 355666554 44 4589999999999987731 1122222333344456899999
Q ss_pred HHHHHHhcCcEEEcCceeeEEEecCC--CCeEEEEEE--CCe-----EEecCEEEEccChhhHHHhhcccccCC------
Q 014827 142 WMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC--GKE-----TYSAGAVVLAVGISTLQELIKNSILCN------ 206 (418)
Q Consensus 142 l~~~l~~~G~~I~l~t~V~~I~~~~~--~g~v~~v~~--~g~-----~~~ad~VV~A~p~~~~~~Ll~~~~~~~------ 206 (418)
|.+.|+++|++|++|++|++|..+.+ .++|++|.+ +|+ ....|.||+|+..-.-..-+++...++
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~~ 311 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNREL 311 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCCC
Confidence 99999999999999999999998522 256888877 232 246899999998755443333321110
Q ss_pred -hHH--HHHhcC----CC----------Ccc--EEEEEEEeccCCC-------CCCCCcc------eeccCCCccceeee
Q 014827 207 -REE--FLKVLN----LA----------SID--VVSVKLWFDKKVT-------VPNVSNA------CSGFGDSLAWTFFD 254 (418)
Q Consensus 207 -~~~--~~~l~~----l~----------~~~--~~~v~l~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~d 254 (418)
..| ...+.. +. -+. .+++.+. +..+. ...|... +..+ ..+.| ..+
T Consensus 312 ~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~-~~~~~~~i~~~t~~~p~~g~~~tg~~vt~-~dS~W-~~s 388 (576)
T PRK13977 312 GGSWTLWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTK-DPKILPYIERITGRDPGSGKTVTGGIVTF-KDSNW-LMS 388 (576)
T ss_pred CccHHHHHHHHhcCccCCChhhhcCCcccceEEEEEEEcC-CHHHHHHHHHHhCCCCCCCccccCceeEE-ecCCe-eEE
Confidence 011 122211 11 111 1222221 11110 0011100 0000 01122 111
Q ss_pred cc-ccccccCCCCCeEEEEEeec----------CCCCCCCCHHHHHHHHHHHHhhhh---cCCCCceeeeeeEEEcCCCc
Q 014827 255 LN-KIYDEHKDDSATVIQADFYH----------ANELMPLKDDQVVAKAVSYLSKCI---KDFSTATVMDHKIRRFPKSL 320 (418)
Q Consensus 255 ~s-~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~el~~~~~~~L~~~~---p~~~~~~~~~~~v~r~~~a~ 320 (418)
.+ ..+|.+......+..++-|+ ...+.+++-+||.++++-.|.-.- +.+..... ...-...|+..
T Consensus 389 ~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~~~~~~~~~i~~~~~-~~ip~~MP~it 467 (576)
T PRK13977 389 ITVNRQPHFKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLGVPEDKIEELAADSA-NTIPVMMPYIT 467 (576)
T ss_pred EEecCCCCCCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcCCchhhHHHHHhhcC-ceEeeccchhh
Confidence 11 12355544333343333331 124566888999988887773211 11110001 00111145555
Q ss_pred cccCCCCCCCCCCCC-CCCCCEEEeccccccCCCc-cchHHHHHHHHHHHHHHHHHh
Q 014827 321 THFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGS-WSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 321 ~~~~pg~~~~r~~~~-~~~~~l~laGd~~~~~~g~-~~~egAi~SG~~aA~~Il~~~ 375 (418)
..+.|-....||..- .+..||-|.|+.+.+.... -++|.++++|+.|+-.++.--
T Consensus 468 a~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~~~ 524 (576)
T PRK13977 468 SQFMPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLGVD 524 (576)
T ss_pred hhhCCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhCCC
Confidence 555555555567543 3567999999998754444 689999999999999987753
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.33 E-value=3.5e-11 Score=118.82 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=111.5
Q ss_pred CCCcccccccCCCCCChhhhhhhchhHHHHhhcCC-ChhHHhh--cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC
Q 014827 25 PTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDN-TDVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAP 101 (418)
Q Consensus 25 p~p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~-~~~~~~~--~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~ 101 (418)
..|.+-...++++++++.+|.++++++..+..+.. +...+.. ++++|+.||+++++++++.++ ++..++...+..+
T Consensus 118 ~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~ 196 (443)
T PTZ00363 118 KVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDD 196 (443)
T ss_pred ECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccc
Confidence 36776666889999999999999998876655442 2223433 457999999999999998655 3333333321211
Q ss_pred hhhhHHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC
Q 014827 102 AEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK 178 (418)
Q Consensus 102 ~~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g 178 (418)
..+.++...+..+..++ ++.-+...+.+|.||++ .|++++++.++..|++++++++|++|..+++ |++++|++ +|
T Consensus 197 ~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g-~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~G 274 (443)
T PTZ00363 197 YLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLG-GLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGG 274 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHH-HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCC
Confidence 11222222222222221 11111233468899986 5999999999999999999999999998764 67778888 67
Q ss_pred eEEecCEEEEccC
Q 014827 179 ETYSAGAVVLAVG 191 (418)
Q Consensus 179 ~~~~ad~VV~A~p 191 (418)
+++.|+.||+...
T Consensus 275 e~i~a~~VV~~~s 287 (443)
T PTZ00363 275 EVAKCKLVICDPS 287 (443)
T ss_pred cEEECCEEEECcc
Confidence 8999999999544
No 35
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.81 E-value=1.3e-07 Score=92.50 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=106.4
Q ss_pred CCcccccccCCCCCChhhhhhhchhHHHHhhcCCC-hhHHhh--cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCh
Q 014827 26 TPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNT-DVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPA 102 (418)
Q Consensus 26 ~p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~~-~~~~~~--~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~ 102 (418)
.|.+=-.+++++.+|+.+|.++++++.-+..+..+ ..+++. ..+.|+.|+++++++++..++.+.-. .+++..+.
T Consensus 119 VP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~ha--iaL~~~~~ 196 (438)
T PF00996_consen 119 VPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHA--IALSLDDS 196 (438)
T ss_dssp --SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHH--TS-SSSSG
T ss_pred CCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHh--hhhccCcc
Confidence 44443337899999999999999988766655432 223333 34789999999999998865544322 12222221
Q ss_pred -hhhHHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCe
Q 014827 103 -EQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE 179 (418)
Q Consensus 103 -~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~ 179 (418)
.+.++...+..++.++ ++.-+.+.+.||..|.++ |++.+.+...=.|+...||++|.+|..+++ |++.+|..+|+
T Consensus 197 ~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge 274 (438)
T PF00996_consen 197 YLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGE 274 (438)
T ss_dssp GGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTE
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCE
Confidence 1223455566555553 232233456789989886 999999998888999999999999999765 88888989999
Q ss_pred EEecCEEEEc
Q 014827 180 TYSAGAVVLA 189 (418)
Q Consensus 180 ~~~ad~VV~A 189 (418)
++.|+.||..
T Consensus 275 ~v~~k~vI~d 284 (438)
T PF00996_consen 275 VVKAKKVIGD 284 (438)
T ss_dssp EEEESEEEEE
T ss_pred EEEcCEEEEC
Confidence 9999999963
No 36
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.73 E-value=3.2e-06 Score=82.63 Aligned_cols=312 Identities=15% Similarity=0.120 Sum_probs=166.6
Q ss_pred CCChhhhhhhchhHHHHhhcCCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHH
Q 014827 38 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI 117 (418)
Q Consensus 38 ~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~ 117 (418)
.||..+++.+++|+.. ++ +.+++.++.||+....|... ||.- ...+|+-. .--||..+-++++++
T Consensus 121 ~Ls~k~r~eL~kL~l~------~E---~~L~~~~I~d~F~~~FF~Sn----FW~~-W~T~FAFq-pWhSa~E~rRyl~Rf 185 (500)
T PF06100_consen 121 GLSEKDRMELIKLLLT------PE---EDLGDKRIEDWFSESFFESN----FWYM-WSTMFAFQ-PWHSAVEFRRYLHRF 185 (500)
T ss_pred CCCHHHHHHHHHHhcC------CH---HHhCcccHHHhcchhhhcCc----hhHh-HHHhhccC-cchhHHHHHHHHHHH
Confidence 4777888888886653 22 35899999999998766544 5542 33455544 467888888888887
Q ss_pred HhhcCC---CcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCC--eEEEEEE--CCe--EE---ecCE
Q 014827 118 ILAHQK---NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAGA 185 (418)
Q Consensus 118 ~~~~~~---~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g--~v~~v~~--~g~--~~---~ad~ 185 (418)
+..-.+ ...+...+-...++++.+|.+.|+++||++++|+.|+.|..+.+++ .++.+.+ +|+ ++ .-|.
T Consensus 186 ~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~Dl 265 (500)
T PF06100_consen 186 IHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDL 265 (500)
T ss_pred HHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCE
Confidence 522111 1111122233458899999999999999999999999999864312 2334444 343 22 4578
Q ss_pred EEEccChhhHHHhhcccccCC-------hHH--HHHhc----CC----------CCccE---EEEEEEeccCC-------
Q 014827 186 VVLAVGISTLQELIKNSILCN-------REE--FLKVL----NL----------ASIDV---VSVKLWFDKKV------- 232 (418)
Q Consensus 186 VV~A~p~~~~~~Ll~~~~~~~-------~~~--~~~l~----~l----------~~~~~---~~v~l~~~~~~------- 232 (418)
|+++...-+...-.++...++ ..| .+.|. .+ .-+.. .++.+. +..+
T Consensus 266 V~vT~GS~t~~s~~G~~~~p~~~~~~~~~~W~LW~~la~k~~~FG~P~~F~~~~~~s~w~eSfTvT~~-d~~~~~~i~~l 344 (500)
T PF06100_consen 266 VFVTNGSMTEGSTYGDNDTPPPLNKELGGSWSLWKNLAAKSPDFGNPEKFCTRIPESKWFESFTVTLK-DPKFFDYIEKL 344 (500)
T ss_pred EEEECCccccccccCCCCCCCCCCCCCCchHHHHHHHHhcCcCCCChhhhcCCcccceeEEEEEEEec-ChHHHHHHHHH
Confidence 888877544333332221100 111 12221 11 11111 122221 1111
Q ss_pred CCCCCCcceeccC-----CCccceeeecc-ccccccCCCCCeEEEEEeec----------CCCCCCCCHHHHHHHHHHHH
Q 014827 233 TVPNVSNACSGFG-----DSLAWTFFDLN-KIYDEHKDDSATVIQADFYH----------ANELMPLKDDQVVAKAVSYL 296 (418)
Q Consensus 233 ~~~~~~~~~~~~~-----~~~~~~~~d~s-~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~el~~~~~~~L 296 (418)
....|+..-.+.. ....| ..+.+ ..+|.+......+..+.-|+ ...+.+++-+||.++++-.|
T Consensus 345 t~~~p~~g~~~tGgliT~~DS~W-lmS~~i~~QP~F~~QP~dv~V~WgYgL~pd~~GnyVkKpM~eCtG~EIl~ElL~HL 423 (500)
T PF06100_consen 345 TGNDPYSGKVGTGGLITFKDSNW-LMSITIPRQPHFPDQPEDVQVFWGYGLFPDKEGNYVKKPMLECTGEEILTELLYHL 423 (500)
T ss_pred HCCCCCcCccCcCceeEeccCCe-EEEEEECCCCccCCCCCCeEEEEEEecccCCCCCccCCchhhCChHHHHHHHHHhc
Confidence 0011110000000 01122 11111 12355544333444344331 12456678899988888777
Q ss_pred hhhhcCCCCceeeeeeE----EEcCCCccccCCCCCCCCCCCC-CCCCCEEEeccccccCCCc-cchHHHHHHHHHHH
Q 014827 297 SKCIKDFSTATVMDHKI----RRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGS-WSQERSYVTGLEAA 368 (418)
Q Consensus 297 ~~~~p~~~~~~~~~~~v----~r~~~a~~~~~pg~~~~r~~~~-~~~~~l~laGd~~~~~~g~-~~~egAi~SG~~aA 368 (418)
.---..+. ....... .-.|+....+.|-....||..- .+..||-|.|..+.+.... -++|.++++|+.|+
T Consensus 424 g~~~~~~~--~~~~~~~~tiP~~MP~its~fmpR~~gDRP~VvP~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 424 GFPDDEIE--ELAKQSTNTIPCMMPYITSQFMPRAKGDRPQVVPEGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred CCChhhhh--HhhccCceEEEeccccchhhccCCCCCCCCCcCCCCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 53221111 0110111 1145555555565555667543 3557999999998754444 58999999999885
No 37
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.53 E-value=8.5e-06 Score=78.55 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=78.9
Q ss_pred hcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCCcceeeecCCcchhhHHHHHHH
Q 014827 66 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 145 (418)
Q Consensus 66 ~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~ 145 (418)
.+-+.|..|||+++|+++.+++.++.+.+...|+-+ .++++...+ +. + .+. . ....-.+|| ..+|++.|.+
T Consensus 66 ~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~--vS-l-a~a-~-~gl~sV~GG-N~qI~~~ll~- 136 (368)
T PF07156_consen 66 NLTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGL--VS-L-AGA-T-GGLWSVEGG-NWQIFEGLLE- 136 (368)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhh--ee-e-eec-c-CCceEecCC-HHHHHHHHHH-
Confidence 355688999999999999999999999999999875 345543222 11 1 121 1 112335677 5678888765
Q ss_pred HHhcCcEEEcCceeeEE-EecCCCCe-EEEEEEC---Ce-EEecCEEEEccChhhHH
Q 014827 146 MRTRGCEFLDGRRVTDF-IYDEERCC-ISDVVCG---KE-TYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 146 l~~~G~~I~l~t~V~~I-~~~~~~g~-v~~v~~~---g~-~~~ad~VV~A~p~~~~~ 196 (418)
+.|.+| +++.|++| ...++ +. ...|... +. .-.+|+||+|+|.+...
T Consensus 137 --~S~A~v-l~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 137 --ASGANV-LNTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred --HccCcE-ecceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 568899 99999999 44443 32 2234432 22 34579999999996543
No 38
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.31 E-value=8.1e-05 Score=71.47 Aligned_cols=196 Identities=11% Similarity=0.073 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhcccccCChHHHHHhcC
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 215 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~ 215 (418)
..+...+.+.+.+.|++|+.+++|++|..++ +++++|.++++++.||.||+|+.++... +.+ ..+
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~-~~~----------- 201 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP-LPL----------- 201 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc-CCc-----------
Confidence 4588888888999999999999999999876 6677788776689999999999987754 433 111
Q ss_pred CCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeeeccc-cccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHH
Q 014827 216 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNK-IYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVS 294 (418)
Q Consensus 216 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~~~~ 294 (418)
.... ..++.+..+........ . .....+... +.+ . .++.++.........+....+++..+.+++
T Consensus 202 -~~~~--g~~~~~~~~~~~~~~~~-~-------~~~~~~~~~y~~p--~-~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~ 267 (337)
T TIGR02352 202 -RPVR--GQPLRLEAPAVPLLNRP-L-------RAVVYGRRVYIVP--R-RDGRLVVGATMEESGFDTTPTLGGIKELLR 267 (337)
T ss_pred -cccC--ceEEEeeccccccCCcc-c-------ceEEEcCCEEEEE--c-CCCeEEEEEeccccCccCCCCHHHHHHHHH
Confidence 1111 11122221100000000 0 000011000 001 0 233332222111122222334567788999
Q ss_pred HHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCC--CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHH
Q 014827 295 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 295 ~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~--~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il 372 (418)
.+.++||.+....+... |..-.+ +++. ..|..- ...+|+|+++-+ .+.|+ --+...|+..|+.|+
T Consensus 268 ~~~~~~P~l~~~~~~~~----~~g~r~-~t~D---~~piig~~~~~~~~~~~~g~--~g~G~---~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 268 DAYTILPALKEARLLET----WAGLRP-GTPD---NLPYIGEHPEDRRLLIATGH--YRNGI---LLAPATAEVIADLIL 334 (337)
T ss_pred HHHHhCCCcccCcHHHh----eecCCC-CCCC---CCCEeCccCCCCCEEEEccc--ccCce---ehhhHHHHHHHHHHh
Confidence 99999998764333221 322111 1222 223221 235799999887 55543 446677999998886
Q ss_pred H
Q 014827 373 D 373 (418)
Q Consensus 373 ~ 373 (418)
.
T Consensus 335 ~ 335 (337)
T TIGR02352 335 G 335 (337)
T ss_pred c
Confidence 4
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.22 E-value=6.4e-05 Score=72.48 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhcc
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
..+.+.|.+.+++.|++|+.+++|++|..++ +++.+|.++++++.||.||+|+.++... |+..
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence 4689999999999999999999999999988 6787799977679999999999987644 5544
No 40
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.18 E-value=0.00024 Score=70.53 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
.+++.|.+.+.+.|++|+++++|++|..++ +++++|+++++++.||.||+|+.++..
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH
Confidence 577888888888999999999999998876 556667777778999999999999763
No 41
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.9e-06 Score=77.44 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCcccccccCCCCCChhhhhhhchhHHHHhhcCC-ChhHHhhcCCc--cHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC
Q 014827 25 PTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDN-TDVAWRKYDSI--TARELFKQFGCSERLYRNVIGPLVQVGLFAP 101 (418)
Q Consensus 25 p~p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~-~~~~~~~~d~~--s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~ 101 (418)
+.|-+-.-+++++++++.+|-++.+++.-.+.++. +.+.|+.++.. |+.+++.+.+..++.++.. ...+.+....+
T Consensus 118 KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~-gh~~al~~dd~ 196 (440)
T KOG1439|consen 118 KVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFI-GHAIALLCDDS 196 (440)
T ss_pred ECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccccccccchHHHHHHHhcccccceeee-eeeeEEEecch
Confidence 35555455899999999999999998766555432 34455555543 9999999998888765432 22222222222
Q ss_pred hhhhHHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCe
Q 014827 102 AEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE 179 (418)
Q Consensus 102 ~~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~ 179 (418)
.-+..+...+..+..++ ++.-+.+.+.||..|+++ |++..++.-.=.||...+|.++.+|....+ |++.+|..+++
T Consensus 197 ~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~ 274 (440)
T KOG1439|consen 197 YLDQPAKETLERILLYVRSFARYGKSPYLYPLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGE 274 (440)
T ss_pred hccCccHHHHHHHHHHHHHHhhcCCCcceecccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCc
Confidence 33444544554444442 122233446789999986 999999887777999999999999998654 78888888888
Q ss_pred EEecCEEEEcc
Q 014827 180 TYSAGAVVLAV 190 (418)
Q Consensus 180 ~~~ad~VV~A~ 190 (418)
...+..||+-.
T Consensus 275 v~~~k~vi~dp 285 (440)
T KOG1439|consen 275 VAKCKKVICDP 285 (440)
T ss_pred eeecceEEecC
Confidence 88888777653
No 42
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.92 E-value=4.7e-05 Score=72.39 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=50.3
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-CeEEecCEEEEccCh
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 192 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~A~p~ 192 (418)
.+|.-.-++.|++.|.+.+++.|++|+++++|.+|..++ ... .+.+. |+++.||.+|+|+..
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f-~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGF-RLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceE-EEEcCCCCEEEccEEEEecCC
Confidence 456623356799999999999999999999999999987 333 56664 558999999999983
No 43
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.91 E-value=0.002 Score=63.67 Aligned_cols=197 Identities=13% Similarity=0.152 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHH--HhhcccccCChHHHHHhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVL 214 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~--~Ll~~~~~~~~~~~~~l~ 214 (418)
.+...|++.+.+.|+++..+++|++|..+++ +++++|.++++++.++.||+++..+... +++.-. ++
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~~l~~~~g~~-~~--------- 252 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSSVVAAMAGFR-LP--------- 252 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhHHHHHHcCCC-CC---------
Confidence 3556677778889999999999999986533 5566777776689999999998887632 222111 10
Q ss_pred CCCCccEEEEEEEeccCCCCCCCCcceeccCCCccceeeeccccccccCCCCCeEEEEEeec-CCCCCCCCHHHHHHHHH
Q 014827 215 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAV 293 (418)
Q Consensus 215 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~el~~~~~ 293 (418)
+. +. ..++.+.++.....+. .+.. ..... ++ .+. +++.++...... ........+.+..+.++
T Consensus 253 -~~--~~-~~~~~~~~~~~~~~~~-~~~~--~~~~~-y~-----~p~---~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T TIGR01373 253 -IE--SH-PLQALVSEPLKPIIDT-VVMS--NAVHF-YV-----SQS---DKGELVIGGGIDGYNSYAQRGNLPTLEHVL 316 (407)
T ss_pred -cC--cc-cceEEEecCCCCCcCC-eEEe--CCCce-EE-----EEc---CCceEEEecCCCCCCccCcCCCHHHHHHHH
Confidence 00 11 1111122222100000 0100 00000 11 010 233333221111 11111223456678889
Q ss_pred HHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCC-CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHH
Q 014827 294 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 294 ~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~-~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il 372 (418)
+.+.+++|.+....+. ..|-.. ..++|.+. |-. ..+.+|+|++.-+ .++| +--|...|+.+|+.|+
T Consensus 317 ~~~~~~~P~l~~~~~~----~~w~G~-~~~t~D~~---PiIg~~~~~gl~~a~G~--~g~G---~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 317 AAILEMFPILSRVRML----RSWGGI-VDVTPDGS---PIIGKTPLPNLYLNCGW--GTGG---FKATPASGTVFAHTLA 383 (407)
T ss_pred HHHHHhCCCcCCCCeE----EEeccc-cccCCCCC---ceeCCCCCCCeEEEecc--CCcc---hhhchHHHHHHHHHHh
Confidence 9999999988643332 235222 22333332 221 1235899999877 4554 3446777999998876
Q ss_pred H
Q 014827 373 D 373 (418)
Q Consensus 373 ~ 373 (418)
.
T Consensus 384 ~ 384 (407)
T TIGR01373 384 R 384 (407)
T ss_pred C
Confidence 4
No 44
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.79 E-value=0.00087 Score=67.45 Aligned_cols=55 Identities=16% Similarity=0.037 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
.++..|++.+++.|++|+.+++|++|.. + +. +.|.++++++.||+||+|+.++..
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~-~~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G--QP-AVVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C--Cc-eEEEeCCcEEECCEEEEccccccc
Confidence 4788888888899999999999999975 3 22 357776668999999999988753
No 45
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.77 E-value=0.0016 Score=63.89 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-CeEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~A~p~~~~ 195 (418)
..++..|.+.+.+ |++|+.+++|.+|+.++ +++ .|.++ |+++.||.||+|+.++..
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~-~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGW-QLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence 3577888888888 99999999999999876 444 56664 556899999999998864
No 46
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.74 E-value=0.0096 Score=58.20 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
.+.+.|.+.+++.|++++.+++|++|..++ +.+ .|.++++++.+|.||+|+..+..
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~-~v~~~~~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE--LLV-TVKTTKGSYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeE-EEEeCCCEEEeCEEEEecCcchH
Confidence 467778888888999999999999998766 545 46676668999999999998653
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.57 E-value=0.0082 Score=56.18 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~~~~ad~VV~A~p~~~ 194 (418)
.+-+.|.+.+.+.|++++.+++|++|..++ +++. +.. +++++++|.||.|.....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcch
Confidence 366778888888899999999999998876 4443 333 356899999999999864
No 48
>PRK10015 oxidoreductase; Provisional
Probab=97.49 E-value=0.016 Score=57.75 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
+-+.|.+.+++.|++|+.+++|+.|..++ +++.++..+++++.||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 33457777788899999999999998766 56766777777899999999998754
No 49
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.47 E-value=0.015 Score=57.60 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC----eEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g----~~~~ad~VV~A~p~~~~ 195 (418)
..+...|.+.+++.|++|+.+++|++|..++ +.++..+. ++ .+++||.||+|+.++..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 3467788888889999999999999998766 44532222 22 36899999999999864
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.46 E-value=0.032 Score=55.05 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
+-+-|++..++.|++++.++.|..+..+++ +.+.++..++.++.|+.||.|..+...
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 445678888889999999999999999885 544334445578999999999987653
No 51
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0013 Score=62.51 Aligned_cols=152 Identities=10% Similarity=0.103 Sum_probs=104.4
Q ss_pred ccCCCCCChhhhhhhchhHHHHhhc--CCChhHHhhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHH
Q 014827 33 YTQFSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 110 (418)
Q Consensus 33 ~l~~~~ls~~dk~~~~~l~~~~~~~--~~~~~~~~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~ 110 (418)
+++++-|+..+|-.+++++.....+ .+.+++..++.++++.|||+..+++++ ++.++ +..+--.+.++++...-
T Consensus 184 vFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~-lqs~v---l~aIaM~~~~~~tt~eG 259 (547)
T KOG4405|consen 184 VFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPK-LQSIV---LHAIAMLSESQLTTIEG 259 (547)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChh-hHHHH---HHHHHhcCcccccHHHH
Confidence 7888999999999888876654444 345667778889999999999999998 45554 22332334555555444
Q ss_pred HHHHHHHH--hhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEE-EEEECCeEEecCEEE
Q 014827 111 LGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVV 187 (418)
Q Consensus 111 ~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~-~v~~~g~~~~ad~VV 187 (418)
+.....++ +|.-+..-+.+|--|.++ |++...+...=.|+-.-++.+|+.|..+++..+++ ++...|+.+.+.++|
T Consensus 260 m~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v 338 (547)
T KOG4405|consen 260 MDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFV 338 (547)
T ss_pred HHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeee
Confidence 44433332 232222335667777776 99999998888899999999999999987422211 223357888888888
Q ss_pred Ec
Q 014827 188 LA 189 (418)
Q Consensus 188 ~A 189 (418)
+.
T Consensus 339 ~s 340 (547)
T KOG4405|consen 339 VS 340 (547)
T ss_pred ec
Confidence 75
No 52
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.43 E-value=0.029 Score=54.72 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
.+...+.+.+.+.|++|+.+++|++|..++ +.+ .|.++++++.+|.||+|+.++..
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchh
Confidence 355666667778899999999999999876 444 46676568999999999998754
No 53
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.38 E-value=0.016 Score=54.13 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHhhcc
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
-.+.+...++++|+.++-|..|..+...++++..+.|.+ +|..+.|+.+|+|+.++..+ +++.
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 356777778899999999999999986543343345555 67779999999999999877 5554
No 54
>PLN02697 lycopene epsilon cyclase
Probab=97.38 E-value=0.1 Score=53.21 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
.|.+.|.+.+.+.|+++ +++.|++|..+++ + +..+++ +|+++.||.||.|..++.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASD-G-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-c-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 46677888888889998 7889999987663 3 433444 677899999999999977
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.37 E-value=0.0092 Score=59.47 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
+-+.|.+.+++.|++|+.+++|++|..++ +++.++..+|+++.||.||.|.....
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44557777788899999999999998776 66666666788899999999998754
No 56
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.11 E-value=0.067 Score=52.33 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHH
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~ 196 (418)
.+++.+++.+.+.| ..+..+++|..+..+. +++.|.++++++.||+||+|+.++.-.
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 57888999999999 5677799999998751 246788876669999999999988654
No 57
>PRK06847 hypothetical protein; Provisional
Probab=97.08 E-value=0.062 Score=52.39 Aligned_cols=56 Identities=23% Similarity=0.183 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
.+.+.|.+.+.+.|++|+++++|++|..++ +.+. |.+ +|+++.+|.||.|......
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGVT-VTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEE-EEEcCCCEEEcCEEEECcCCCcc
Confidence 467788888888899999999999998766 4453 555 6778999999999998653
No 58
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.03 E-value=0.046 Score=53.73 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
.|.+.|.+.+++.|++|+.+++|++|..++ +.++ |++ +|+++.+|.||.|...+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 477888888888899999999999999876 4453 555 567899999999999865
No 59
>PRK07190 hypothetical protein; Provisional
Probab=96.98 E-value=0.15 Score=51.78 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH-HHhhc
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
+-+.|.+.+.+.|++|+.+++|++|..+++ + ++.+..+|+++.|++||.|...... .+.++
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~-~-v~v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA-G-CLTTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-eEEEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 445666678888999999999999998774 4 5433336778999999999998764 55443
No 60
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.96 E-value=0.002 Score=63.39 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=46.3
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
.||.-.-...+++.|.+.+++.|++|+++++|++|..++ +.+..|.+ +++++.||.||+|+...
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----S
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCC
Confidence 466554456799999999999999999999999999877 45668888 78899999999998853
No 61
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.95 E-value=0.058 Score=51.13 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=62.5
Q ss_pred hhcCCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhh---cCCCcceeeecCCcchhhHHH
Q 014827 65 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA---HQKNFDLVWCRGTLREKIFEP 141 (418)
Q Consensus 65 ~~~d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~---~~~~~~~~~~~gG~~~~l~~~ 141 (418)
+.+++.|+.||+..+.|...+. ..|.- +|+- ..--|+..+-+++-+++.. -.....+.+-+-...++|+.+
T Consensus 159 E~L~~~tI~d~Fse~FF~sNFW-~yW~t----mFAF-ekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlP 232 (587)
T COG4716 159 EKLDDLTIEDWFSEDFFKSNFW-YYWQT----MFAF-EKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLP 232 (587)
T ss_pred HhcCCccHHHhhhHhhhhhhHH-HHHHH----HHhh-hHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHH
Confidence 4689999999999986755422 23332 3332 3345665555544443311 111111222222335789999
Q ss_pred HHHHHHhcCcEEEcCceeeEEEecCCCC
Q 014827 142 WMDSMRTRGCEFLDGRRVTDFIYDEERC 169 (418)
Q Consensus 142 l~~~l~~~G~~I~l~t~V~~I~~~~~~g 169 (418)
|...|+++|+++..++.|+.|..+...|
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t~g 260 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDTPG 260 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccCcc
Confidence 9999999999999999999999876434
No 62
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0066 Score=57.20 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCCCcccccccCCCCCChhhhhhhchhHHHHhhcCCChhHHhhcC-CccHHHHHHH-hCCCHHHHHHHHHHHHHhhhcCC
Q 014827 24 LPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYD-SITARELFKQ-FGCSERLYRNVIGPLVQVGLFAP 101 (418)
Q Consensus 24 ~p~p~~~~~~l~~~~ls~~dk~~~~~l~~~~~~~~~~~~~~~~~d-~~s~~e~l~~-~~~~~~~~~~~~~p~~~~~~~~~ 101 (418)
.+.|-|=.-++++++||+.+|-++++++.-+.........++++. +.+..+++.. .+++....+.+.-.++. . .+
T Consensus 118 ~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l-~--ld 194 (434)
T COG5044 118 YKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIAL-S--LD 194 (434)
T ss_pred EECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhh-h--cc
Confidence 345555445899999999999999987643222211122333333 2455666554 55555533322222221 1 12
Q ss_pred hhhhHHHHHHHHHHHHHh--hcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCe
Q 014827 102 AEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE 179 (418)
Q Consensus 102 ~~~~Sa~~~~~~l~~~~~--~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~ 179 (418)
-+..++..+..+..++. +.-+.+.+.||.-|+++ |.+..++.-.-.|+.+.+|+++.+|...+ . |.+|..++.
T Consensus 195 -l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~ 269 (434)
T COG5044 195 -LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSL 269 (434)
T ss_pred -ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcc
Confidence 34555555555544432 22233455678888876 99999988777899999999999998765 2 434555667
Q ss_pred EEecCEEEEcc
Q 014827 180 TYSAGAVVLAV 190 (418)
Q Consensus 180 ~~~ad~VV~A~ 190 (418)
+..|..||...
T Consensus 270 ~~ka~KiI~~~ 280 (434)
T COG5044 270 TQKAGKIISSP 280 (434)
T ss_pred eeecCcccCCc
Confidence 88888887643
No 63
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.89 E-value=0.037 Score=58.42 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC-eEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~A~p~~~~ 195 (418)
.+++.|.+.+.+ |++|+.+++|++|..++ +.+. |.+++ ..+.||.||+|+.++..
T Consensus 409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 409 ELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 578888888888 99999999999998876 5453 66654 45789999999998764
No 64
>PRK06185 hypothetical protein; Provisional
Probab=96.87 E-value=0.1 Score=51.56 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE---CCe-EEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~-~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.+.+.|.+.+.+. |++|+.++.|+++..++ +++++|.+ +|+ +++||.||.|...+. +.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4667777777654 78999999999998876 55655554 343 789999999999875 445443
No 65
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.80 E-value=0.2 Score=52.39 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecC-CCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~-~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+...+++.+++.|++|+.+++|.+|..++ + +++++|++ +++ ++.||.||.|+.++.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 3578888888899999999999999998763 2 56766654 344 579999999999985
No 66
>PRK06834 hypothetical protein; Provisional
Probab=96.75 E-value=0.11 Score=52.61 Aligned_cols=60 Identities=23% Similarity=0.222 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.+-+.|.+.+++.|++|+.+++|++|..++ +.|. |++ +|++++||+||.|...... .+.+
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD--TGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 466777788888899999999999999877 3353 555 5668999999999988663 4444
No 67
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.74 E-value=0.0048 Score=60.45 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC---eEEecCEEEEccChhhHHHhhcc
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g---~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
.+|.++|.+.++++|++|..+++|.++..++ +++++|.+++ .+++||+||+|+.++....|+..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 4699999999999999999999999999887 6677777543 48999999999999866666544
No 68
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.63 E-value=0.13 Score=50.21 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.+.+.|.+.+.+ .|++++.+++|++|..++ +.++ |++ +|+++.||.||.|.+.+. +.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 477888888877 489999999999998776 4453 555 567899999999999875 344443
No 69
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.63 E-value=0.11 Score=53.23 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~A~p~~~~ 195 (418)
..++..+++.+.++|++|+.+++|++|..++ +++++|++ +| .++.|+.||.|+.++.-
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 3577788888889999999999999999876 66776665 24 36899999999999864
No 70
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.57 E-value=0.12 Score=50.39 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhh
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.+.+.|.+.+.+.| ++|+.+++|++|..++ +.++ |++ +|+++.+|.||.|...... .+.+
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l 169 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANSKVRQLA 169 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHc
Confidence 47788888888887 8999999999998776 4453 555 6778999999999887653 4433
No 71
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.55 E-value=0.0068 Score=58.80 Aligned_cols=55 Identities=24% Similarity=0.194 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
+++.|.+.|+++|++|+++|.|..|+.++ +.+.+|.+ +|+++.+|+||+|+.-..
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence 67788888999999999999999999988 54666776 577999999999998643
No 72
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.51 E-value=0.93 Score=44.29 Aligned_cols=56 Identities=25% Similarity=0.137 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
..+-+.+.+.+. .++.+++++.|++|..++ +.+ .|++ +|+++.|+.||-|.++...
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~-~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG--DGV-LVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceE-EEEECCCCEEEeeEEEECCCcccc
Confidence 346677777777 567899999999999877 323 3444 6779999999999985433
No 73
>PRK07045 putative monooxygenase; Reviewed
Probab=96.50 E-value=0.31 Score=47.74 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHh
Q 014827 137 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQEL 198 (418)
Q Consensus 137 ~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~L 198 (418)
.|.+.|.+.+.. .|++|+++++|+.|..+++ +.++.|++ +|+++.+|.||.|-.... +.+.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 366667777654 4789999999999998764 54445666 577899999999999876 4553
No 74
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.49 E-value=0.95 Score=44.28 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+.|++++ ++.|..+..+++ + .+.|++ +|++++||.||.|++...
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 3577888888888888886 668888887632 3 345666 456899999999999875
No 75
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.47 E-value=0.29 Score=48.02 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.|.+.|.+.+.+.+ ++|+.++.|+.+..++ +.|+.+.. +|++++||.||-|=..+. +.+.+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 47888888888777 7999999999999987 34653333 678899999999988766 456555
No 76
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.45 E-value=0.22 Score=48.98 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll 199 (418)
.+.+.|.+.+.+.|++|+.+++|++|..++ +.+ .|++ +|+++.||.||.|..... +.+.+
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD--EGV-TVTLSDGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEEcCCCChHHHHHc
Confidence 478888888888899999999999998776 445 3555 577899999999998765 34443
No 77
>PRK06184 hypothetical protein; Provisional
Probab=96.43 E-value=0.48 Score=48.29 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCeEEecCEEEEccChhhH-HHhhc
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
+-+.|.+.+.+.|++|+++++|++|..+++ + |+ +++ ++++++||.||.|...... .+.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~-~-v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD-G-VT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC-c-EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 556677778888999999999999998763 3 54 333 3468999999999998764 45443
No 78
>PRK08244 hypothetical protein; Provisional
Probab=96.34 E-value=0.45 Score=48.37 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CC-eEEecCEEEEccChhh-HHHhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 199 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VV~A~p~~~-~~~Ll 199 (418)
+-+.|.+.+++.|++|+.+++|++|..++ +.++ |++ +| ++++||.||.|..... +.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 55666667777899999999999998876 3353 333 34 4799999999998865 35544
No 79
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.30 E-value=0.46 Score=45.44 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.|-+.|.+.+++.|++|+.+++|+.+..+++ .++.+.. +|+ +++||.||-|-..+. +.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 3667788888888999999999999998773 3443333 233 689999999999876 455544
No 80
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.29 E-value=0.33 Score=47.89 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.+.+.|.+.+.+.|++|+.+++|.+|+.++ +.+. |++ +|++++||.||.|...+. +.+++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG--DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 366788888888899999999999998776 3353 555 567899999999999866 455554
No 81
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.20 E-value=0.19 Score=49.28 Aligned_cols=60 Identities=18% Similarity=0.010 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll 199 (418)
.+.+.|.+.+.+.++..+.+++|++|..++ +.+. |++ +|++++||.||.|..... +.+.+
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE--DEVT-VTLADGTTLSARLVVGADGRNSPVREAA 173 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEE-EEECCCCEEEEeEEEEecCCCchhHHhc
Confidence 477888888877766569999999998776 4454 555 567899999999999865 34443
No 82
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.13 E-value=1.3 Score=44.94 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEccChhhHH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~A~p~~~~~ 196 (418)
+|.-..++...++|.+|.+.++|+++..++ | |++|.+. |+ ++.|+.||-|+.++.-.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 466667777788999999999999999987 7 8899873 33 47899999999998754
No 83
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.10 E-value=0.8 Score=47.11 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEccChhhH-HHhhc
Q 014827 138 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
+-+.|.+.+.+. |++|+.+++|++|+.+++ + |+ |++ +| .+++||.||-|-..... .+.+.
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~-~-v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDD-G-VT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC-e-EE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 345555666654 899999999999998773 3 54 444 35 47899999999998764 55553
No 84
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.04 E-value=0.022 Score=57.64 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHh----cC--cEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHH
Q 014827 137 KIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 137 ~l~~~l~~~l~~----~G--~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~ 196 (418)
.+.+.+++.+++ .| ++|+++++|++|..++ +.++.|.++.+++.||.||+|+.++...
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence 578888888888 77 6799999999999875 3356678876689999999999998753
No 85
>PRK09126 hypothetical protein; Provisional
Probab=95.89 E-value=0.48 Score=46.46 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=43.0
Q ss_pred hHHHHHHHHH-hcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhh
Q 014827 138 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 199 (418)
Q Consensus 138 l~~~l~~~l~-~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll 199 (418)
+-+.|.+.+. ..|++|+.+++|++++.++ +.+ .|.+ +|+++.||.||.|..... +.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGA-QVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 5555555554 4589999999999998766 434 3554 577899999999999864 34444
No 86
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.87 E-value=0.035 Score=55.43 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecC-CCCeEEEEEEC--CeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVCG--KETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~-~~g~v~~v~~~--g~~~~ad~VV~A~p~~ 193 (418)
..+++.|.+.+++.|++|+++++|++|..++ + ++|.+|... +.++.++.||+|+...
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~-g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFD-GAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC-CeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 4699999999999999999999999998763 3 677777653 3578999999999954
No 87
>PRK06126 hypothetical protein; Provisional
Probab=95.86 E-value=1.4 Score=45.52 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEccChhhH-HHhhc
Q 014827 138 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
|-+.|.+.+.+. |++|++++.|++|..++ +.|+.+.. +|+ ++.+|.||.|...... .+.+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 445566666554 78999999999999876 33542221 243 6899999999998764 44443
No 88
>PLN02463 lycopene beta cyclase
Probab=95.85 E-value=2.3 Score=42.63 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
.+-+.|.+.+.+.|++++ ++.|++|..++ +.+ .|++ +|+++.||.||.|.....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 466777777788899986 67999999876 444 4666 566899999999998753
No 89
>PRK07588 hypothetical protein; Provisional
Probab=95.83 E-value=0.69 Score=45.39 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QEL 198 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~L 198 (418)
|.+.|.+.+. .|++|+++++|++|+.++ +.|. |++ +|+++++|.||-|-..... .+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR--DGVR-VTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEE-EEECCCCEEEeCEEEECCCCCccchhh
Confidence 5555655554 378999999999998876 4454 555 6778899999999987653 443
No 90
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.82 E-value=0.025 Score=54.86 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=49.9
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC--CeEEecCEEEEccChhhH
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTL 195 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~A~p~~~~ 195 (418)
.||.-.-++.+++.|.+.+++.|++|+++++|++| ++ +. +.+.+. +++++||+||+|+.....
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGASW 142 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCccc
Confidence 56655556789999999999999999999999999 33 33 356653 357999999999997543
No 91
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.81 E-value=0.0077 Score=58.57 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=79.1
Q ss_pred ccHHHHH---HHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCC--CcceeeecCCcchhhHHHHHH
Q 014827 70 ITARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMD 144 (418)
Q Consensus 70 ~s~~e~l---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~--~~~~~~~~gG~~~~l~~~l~~ 144 (418)
.++.+|. .+ .+++.+.+.|+.|...-.++.+|+++++.++.++=..+...+.. ..-.++|++|+ +.+++.|.+
T Consensus 129 ~~~~e~~d~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gy-t~~~~~ml~ 206 (377)
T TIGR00031 129 EELQEIADPDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGY-TKLFEKMLD 206 (377)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccH-HHHHHHHHh
Confidence 4455555 76 48999999999999999999999999998764221111001100 12247899995 678887764
Q ss_pred HHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHH
Q 014827 145 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 197 (418)
Q Consensus 145 ~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~ 197 (418)
..+.+|++|+.+..+..++ ++ +..+++.+. +.||.|.|.+.+..
T Consensus 207 ---~~~i~v~l~~~~~~~~~~~--~~---~~~~~~~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 207 ---HPLIDVKLNCHINLLKDKD--SQ---LHFANKAIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred ---cCCCEEEeCCccceeeccc--cc---eeecccccc-CcEEEecCchHHHh
Confidence 3467899999888887644 32 333333333 88999998887653
No 92
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.78 E-value=2.3 Score=43.46 Aligned_cols=57 Identities=23% Similarity=0.142 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~A~p~~~~ 195 (418)
..+...+++.+.++|++|+.+++|++|..++ +. ++|++. |+ ++.|+.||.|+.++.-
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 3466677777888999999999999998765 43 345542 43 6899999999999763
No 93
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.75 E-value=0.81 Score=44.83 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=40.9
Q ss_pred hHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
+-+.|.+.+.+ .|++|+.+++|++|..++ +.+ .|++ +|.++.+|.||.|...+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSV-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCCh
Confidence 44566666655 478999999999998766 445 3555 566899999999999865
No 94
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.68 E-value=0.038 Score=54.30 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeE-EecCEEEEccChhhHH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGISTLQ 196 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~-~~ad~VV~A~p~~~~~ 196 (418)
.+...|++.+.++|++|++|++|+.|+.+++ | ++.+.+ +|++ ++|+.||.+.+..+..
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 3778899999999999999999999999885 5 444555 4555 9999999999987653
No 95
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.67 E-value=0.042 Score=55.45 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEccChh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~A~p~~ 193 (418)
+..+.+.|.+.+++.|++|+++++|++|..++ ++|++|.+. + .++.++.||+|+...
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 35689999999999999999999999999865 778887762 2 368999999999854
No 96
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.62 E-value=3.1 Score=42.44 Aligned_cols=56 Identities=20% Similarity=0.070 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC----eEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g----~~~~ad~VV~A~p~~~~ 195 (418)
.+...++..+.++|++|+.+++|++|..++ +. +.|.+ ++ .++.|+.||.|+.++.-
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREG--GL-WRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 466677777888999999999999998865 43 45554 22 25899999999999763
No 97
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.53 E-value=0.032 Score=49.15 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC-eEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~A~p~~ 193 (418)
.+.+.+.+.+++.+.+|++++.|++|..+++ + |.|++.. +++.||+||+|+...
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-~--w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGD-G--WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETT-T--EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEecc-E--EEEEEEecceeeeeeEEEeeecc
Confidence 4778888888889999999999999999874 4 5688854 589999999999953
No 98
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.51 E-value=0.93 Score=44.73 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhhc
Q 014827 138 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
|-+.|.+.+.+. |++|+.+++|++|..++ +.+ .|++ +|++++||.||.|-.... +.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEA-WLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 556666666654 68999999999998776 334 3555 677899999999999855 455443
No 99
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.44 E-value=0.98 Score=44.14 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhh
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll 199 (418)
.+.+.|.+.+++.| ++++ ++.|++|..++ +.+ .|++ +|+++.||.||.|...+. +.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAA-TLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeE-EEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 47788888888887 8888 99999998766 444 3665 566899999999999864 34444
No 100
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.44 E-value=4.2 Score=42.79 Aligned_cols=62 Identities=29% Similarity=0.306 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCC-CeEEEEEE-------CC--eEEecCEEEEccChhh-HHHhhc
Q 014827 138 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~G~--~I~l~t~V~~I~~~~~~-g~v~~v~~-------~g--~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
+-+.|.+.+.+.|+ +++.++.|++++.++++ ..|+ |++ +| ++++||+||-|=.+.. +.+.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 55667777777765 77999999999876421 2243 443 24 4799999999998865 466654
No 101
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.32 E-value=0.057 Score=53.54 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~A~p~~~~ 195 (418)
..+++.|.+.++++|++|+++++|++|..++ ++|++|... |+ ++.|+.||+|+.....
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 5689999999999999999999999999987 789888763 44 5789999999998664
No 102
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.30 E-value=2.2 Score=44.02 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE---CCe-EEecCEEEEccChhh-HHHhhc
Q 014827 138 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~-~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
+-+.|.+.+.+. |++|+++++|+++..++ +.+. +++ +|+ +++||.||.|..... +.+++.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVT-LTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 445566666665 68999999999999876 3343 332 343 689999999999865 455554
No 103
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.30 E-value=0.059 Score=53.05 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+++.|++|+++++|.+|..++ +.+ .|.++++++.||.||+|++++.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 4588889999999999999999999998766 444 5677666899999999999875
No 104
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.29 E-value=1.2 Score=43.73 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhhc
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
.+-+.|.+.+.+. |++|+.+++|++|..++ +.+ .|++ +|++++||.||.|...+.. .+.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD--DGW-ELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeE-EEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 3666777777766 89999999999998766 334 4555 5668999999999998764 44443
No 105
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.28 E-value=0.94 Score=44.76 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEccChhhH-HHhh
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.+.+.|.+.+.+. |++|+.+++|++|..++ +.+ .|++. + .+++||.||.|-..... .+.+
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~ 187 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAA-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAA 187 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--Cee-EEEEccCCcceEEeeeEEEEeCCCCchhHHHh
Confidence 4677777777665 68999999999998776 334 35542 3 36999999999998664 4443
No 106
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.23 E-value=0.87 Score=46.73 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
..+..+|+..+.+.|+.|.-+++|++|....+ ++++|.+.-+.+++.+||=|+..++
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETD--KFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecC--CccceeccCcceecceEEechhHHH
Confidence 35789999999999999999999999998873 4668888777899999999999998
No 107
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.21 E-value=0.082 Score=52.19 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=50.2
Q ss_pred eecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 129 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 129 ~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
+|.......+.+.|.+.+++.|++|++++.|++|..++ +. +.|+++++++.+|.||+|++...
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCcc
Confidence 33333346689999999999999999999999998755 43 45777777899999999999743
No 108
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.01 E-value=0.094 Score=54.02 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~A~p~~~ 194 (418)
.+...+++.+.++|++|+.+++|++|..++ +++++|++ ++ .++.||.||.|+.++.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 466777777888999999999999999876 66777765 23 4789999999999986
No 109
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.99 E-value=0.083 Score=54.83 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEec-CEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~a-d~VV~A~p~~~ 194 (418)
..|++.|.+.+++.|++|+++++|++|..++ |+|++|.. +++ ++.| +.||+|+....
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4588999999999999999999999998875 77877765 333 4788 99999999875
No 110
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.71 E-value=4.7 Score=39.54 Aligned_cols=62 Identities=10% Similarity=-0.062 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.+.+.|.+.+.+.|++|+++++|++|...++ ..+ .|+. +|+ +++||.||-|-..+. +.+.++
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS-DRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-Cce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 3666777777778999999999999976222 223 3444 454 689999999888866 455554
No 111
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.70 E-value=0.2 Score=52.02 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEec-CEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~a-d~VV~A~p~~~~ 195 (418)
..|.+.|.+.+++.|++|++++.|.+|..++ ++|++|.. +++ ++.| +.||+|+....-
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 4589999999999999999999999998765 77888876 343 4676 789999997653
No 112
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.63 E-value=0.12 Score=53.44 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=48.2
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEec-CEEEEccChhh
Q 014827 131 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 194 (418)
Q Consensus 131 ~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~a-d~VV~A~p~~~ 194 (418)
.+| ..|+++|.+.+++.|++|+++++|++|..++ |+|++|.. +|+ .+.+ +.||+|+....
T Consensus 214 ~~G--~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 214 AGG--QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred CCh--HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 355 4699999999999999999999999998754 78988865 343 3556 68999999765
No 113
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.60 E-value=0.15 Score=52.66 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..|.+.|.+.+.+.|++|..++.|+++..++ |+|.|+.. +|+ .+.|+.||+|+....
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 45699999999988999999999999999865 78888765 343 578999999999864
No 114
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.60 E-value=0.13 Score=53.13 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecC-EEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad-~VV~A~p~~~~ 195 (418)
..|++.|.+.+++.|++|+++++|++|..++ |+|++|.. +|+ .+.|+ .||+|+....-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 4699999999999999999999999999876 78888876 454 46784 79999987553
No 115
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.59 E-value=0.12 Score=53.69 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecC-EEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad-~VV~A~p~~~ 194 (418)
..++..|.+.+++.|++|+++++|++|..+++ |+|++|.. +++ ++.|+ .||+|+....
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 46888888888899999999999999998754 78988876 343 46787 6999999765
No 116
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.46 E-value=0.16 Score=51.46 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~A~p~~~~ 195 (418)
..+.++|.+.+++.|++|+++++|++|..+++ +.+ .|++ +| .++.||+||+|+..+..
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 35788888888889999999999999988653 433 3332 23 36899999999998764
No 117
>PRK07121 hypothetical protein; Validated
Probab=94.44 E-value=0.14 Score=52.00 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=48.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEec-CEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~a-d~VV~A~p~~~ 194 (418)
+..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.. +++ ++.| +.||+|+....
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 346899999999999999999999999988754 67888876 333 5788 99999999755
No 118
>PRK08013 oxidoreductase; Provisional
Probab=94.38 E-value=3.4 Score=40.67 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhhc
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
.|-+.|.+.+.+. |++|+.+++|++|+.+++ + +. |++ +|++++||.||-|-..+.. .+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-~-v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGEN-E-AF-LTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC-e-EE-EEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 3566777777765 789999999999987763 3 43 444 6788999999999998664 55543
No 119
>PRK11445 putative oxidoreductase; Provisional
Probab=94.37 E-value=5.2 Score=38.61 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEccChhhH-HHhh
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.+.|++++.++.|++|..+++ + + .|+. +|+ +++||.||.|...... .+.+
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~-~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDD-G-Y-HVIFRADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCC-E-E-EEEEecCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 356899999999999987763 3 4 3443 453 6899999999998653 4444
No 120
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.37 E-value=0.14 Score=51.27 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~A~p~~~~ 195 (418)
..+.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+ +++ .+.+|.||+|+.....
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 35889999999999999999999999998654 67777765 233 4689999999997553
No 121
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.36 E-value=0.15 Score=47.02 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC------------CeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~------------g~~~~ad~VV~A~p~~~ 194 (418)
..+...|.+.+.+.|++|+.++.|++|..+++ +++.++.++ ..++.|+.||.|+..+.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 35788899988899999999999999987663 477776642 14689999999998654
No 122
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.20 E-value=0.19 Score=49.72 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~A~p~~ 193 (418)
.+.+.|.+.+++.|++|+++++|.++..++ +++..+.. ++ .+++||.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 588999999999999999999999999876 55655544 34 358999999998863
No 123
>PRK06996 hypothetical protein; Provisional
Probab=94.20 E-value=4.5 Score=39.77 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEccCh--hhHHHhhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGI--STLQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~---g-~~~~ad~VV~A~p~--~~~~~Ll~ 200 (418)
.|-+.|.+.+++.|++++.++.|++|+.+++ + |+ ++.+ | ++++||.||-|-.. ....+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~-~-v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD-G-VT-LALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC-e-EE-EEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 4778888888888999999999999987663 3 43 5542 2 58999999999774 34445543
No 124
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.02 E-value=0.2 Score=50.81 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~~ 195 (418)
.+.+.|.+.+++.| ++|+++++|++|..+++ +.+ .|.+ +|+ ++.||+||+|+..+..
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 47888988888887 69999999999998654 533 3332 243 6899999999999874
No 125
>PLN02985 squalene monooxygenase
Probab=93.98 E-value=8.3 Score=39.45 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.+.+.|.+.+.+. +++++.+ .|.++..++ +.+.+|++ +|+ ++.||.||.|-.... +++.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 3677787777665 5788866 567766555 55656665 454 467999999999866 455443
No 126
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.93 E-value=0.18 Score=51.47 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CC---eEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK---ETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g---~~~~ad~VV~A~p~~~ 194 (418)
.+++.|.+.+++.|++|+++++|++|..++ |+|++|.. .+ .++.+|.||+|+....
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 588999999999999999999999998765 77877766 22 2688999999998543
No 127
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.89 E-value=0.26 Score=51.06 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..|.+.|.+.+.+.|++|..++.|+++..+++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 356899999988888999999999999998644 78888875 343 578999999999865
No 128
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.85 E-value=0.25 Score=49.31 Aligned_cols=57 Identities=12% Similarity=0.272 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEccChh
Q 014827 135 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 193 (418)
Q Consensus 135 ~~~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~A~p~~ 193 (418)
+..+.+.|.+.+.+ .|++|+++++|.+|..++ ++|.+|.. +++ ++.|+.||+|+...
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 34588889888865 489999999999998765 67777553 444 58999999999974
No 129
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.79 E-value=0.27 Score=51.22 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=48.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..|.+.|.+.+.+.|++|..++.|.+|..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 356889999988888999999999999988654 67888764 343 578999999999865
No 130
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.79 E-value=0.22 Score=51.48 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecC-EEEEccChhhH
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 195 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad-~VV~A~p~~~~ 195 (418)
+..+...|.+.+++.|++|+++++|++|..++ ++|++|.. +++ ++.|+ .||+|+.....
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 35688899999999999999999999999865 77888766 443 47786 69998886543
No 131
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.68 E-value=0.23 Score=50.15 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
..+.+.|.+.+++.|+++..+ .|..+..++ +++++|..+++++.+|.||+|+.....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence 468999999999999999876 788887655 678888888888999999999998653
No 132
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.52 E-value=0.32 Score=50.53 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..|...|.+.+.+.|++|.+++.|+++..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 456889999888888999999999999998644 78888875 343 578999999999865
No 133
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.48 E-value=8 Score=37.64 Aligned_cols=61 Identities=5% Similarity=0.090 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH-HHhhc
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
.|-+.|.+.+.+.+ ++++.++.|++|..++ +.+ .|.+++++++||.||-|-..+.. .+.+.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v-~v~~~~~~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN--DYS-IIKFDDKQIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeE-EEEEcCCEEeeCEEEEeCCCCchhHHhcC
Confidence 47777888777765 7899999999998776 345 36666568999999999998764 55543
No 134
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.25 E-value=0.2 Score=49.04 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=43.7
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCe-EEecCEEEEccChhh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGIST 194 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~-~~~ad~VV~A~p~~~ 194 (418)
++..+.+...+.|+++|++|++|++|++|..+ + |+ ..+|+ ++.++.||.|+....
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~---~-v~--~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD---G-VT--LKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC---c-EE--EccCCeeEecCEEEEcCCCcC
Confidence 45678888889999999999999999999853 3 32 22455 599999999998754
No 135
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=93.17 E-value=0.32 Score=50.51 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--C-Ce-EEecC-EEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE-TYSAG-AVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~-g~-~~~ad-~VV~A~p~~~ 194 (418)
..|.+.|.+.+++.|++|+++++|++|..++ ++|++|++ + ++ ++.++ .||+|+....
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 4588999999999999999999999999876 77888776 2 32 46775 7999999765
No 136
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=93.16 E-value=0.35 Score=45.36 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=46.0
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CCe----EEecCEEEEccChhhHHHhhccccc
Q 014827 141 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE----TYSAGAVVLAVGISTLQELIKNSIL 204 (418)
Q Consensus 141 ~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~----~~~ad~VV~A~p~~~~~~Ll~~~~~ 204 (418)
.|...+.+.+.+|++++.|++|..+++++++++|++ ++. ++.++.||+|..+-.+.+||-....
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 344444444899999999999987633378888887 233 4678999999999888888765433
No 137
>PRK06116 glutathione reductase; Validated
Probab=93.14 E-value=0.33 Score=48.70 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
...+.+.+.+.+++.|++|++++.|.+|..+++ +.+. +.+ +|+++.+|.||+|+...
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~-v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLT-LTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEE-EEEcCCcEEEeCEEEEeeCCC
Confidence 345777888889999999999999999987653 4343 444 57789999999998653
No 138
>PRK12839 hypothetical protein; Provisional
Probab=93.14 E-value=0.31 Score=50.52 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CCe-EE-ecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TY-SAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~-~~-~ad~VV~A~p~~~ 194 (418)
..|+..|.+.+++.|++|+++++|++|..+++ |+|++|.. +++ ++ .++.||+|+....
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 45889999999999999999999999987644 78888875 233 33 4589999998755
No 139
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.09 E-value=0.4 Score=49.68 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=47.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..+.+.|.+.+.+.|++|+.++.|++|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 34588889988888899999999999998875 77877654 343 578999999999754
No 140
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.93 E-value=0.37 Score=50.64 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 140 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 140 ~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+.|.+.+++.|++|+.++.|++|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 566667778899999999999998865 78888875 243 578999999999855
No 141
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.89 E-value=0.43 Score=47.01 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE------CCeEEecCEEEEccChhhHHHh
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGISTLQEL 198 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~------~g~~~~ad~VV~A~p~~~~~~L 198 (418)
.|.+.|.+.+.+. |++|++|+.|+.|...+| |+ |.|.+ +..++.|+.|++.+...++.=|
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 4788888888877 899999999999999886 63 45554 1357999999999999987733
No 142
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.87 E-value=0.34 Score=48.47 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=48.2
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhc
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 200 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~ 200 (418)
...+.+.+.+.+++.|++|+++++|++|..+ +++..+.++++++.+|.||+|++...-..++.
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~ 252 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVKPNTEFLE 252 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH
Confidence 3457788888899999999999999999643 34556667777899999999998754333443
No 143
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.86 E-value=0.47 Score=49.27 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..+.+.|.+.+++.|++|..++.|.+|..++ |+|.++.. +|+ ++.|+.||+|+....
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 35688999998988899999999999998765 77777653 343 589999999999864
No 144
>PRK06753 hypothetical protein; Provisional
Probab=92.83 E-value=7.9 Score=37.51 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhhc
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
|-+.|.+.+. +.+|+++++|++|+.++ +.+. |++ +|+++.+|.||-|-..+. +.+.+.
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENET--DKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecC--CcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 4455554443 35899999999998765 4454 555 577899999999999765 455443
No 145
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=92.76 E-value=0.5 Score=43.47 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC------------CeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~------------g~~~~ad~VV~A~p~~~ 194 (418)
.+.+.|.+.+.+.|++|+.++.|++|..+++..+|.+|.++ ..++.|+.||.|++...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 47888888888899999999999999987631167777663 13688999999998643
No 146
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=92.71 E-value=0.49 Score=49.36 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=44.3
Q ss_pred chhhHHHHHHHHHhc----CcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChh
Q 014827 135 REKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 193 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~----G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~ 193 (418)
+..+...|.+.+++. |++|+.++.|++|..+++ |+|++|.. +|+ .+.|+.||+|+...
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 345777777666543 799999999999988654 68888875 243 57899999999874
No 147
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=92.70 E-value=11 Score=36.97 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCCEEEeccccccCCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 338 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 338 ~~~l~laGd~~~~~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.++++++||..+.-.|. .++.-|+.||..||+.|.+.+.
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 36899999987644443 5788999999999999998875
No 148
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.65 E-value=0.43 Score=49.41 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+.|++|..++.|+++..++ |+|++|.. +++ .+.|+.||+|+....
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4588899988888899999999999999875 88988875 233 578999999999865
No 149
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=92.28 E-value=0.55 Score=45.73 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccCh
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 192 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~ 192 (418)
.+.+.+.+.++++ +.+| ..+.|++|..++ ++|++|.+ +|+++.+|.||+|+.+
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 3455666667764 4566 467999999988 78999998 5789999999999998
No 150
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.28 E-value=0.53 Score=34.56 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.9
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE
Q 014827 133 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 176 (418)
Q Consensus 133 G~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~ 176 (418)
.+...+.+.+.+.+++.|++|++|+.|++|..+++ + +. |++
T Consensus 37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~ 77 (80)
T PF00070_consen 37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTL 77 (80)
T ss_dssp TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEE
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEE
Confidence 34456788888999999999999999999998885 5 65 665
No 151
>PRK07538 hypothetical protein; Provisional
Probab=92.21 E-value=12 Score=36.86 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=41.1
Q ss_pred hHHHHHHHHHh-cCc-EEEcCceeeEEEecCCCCeEEEEEE--CC--eEEecCEEEEccChhhH-HHhhc
Q 014827 138 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 138 l~~~l~~~l~~-~G~-~I~l~t~V~~I~~~~~~g~v~~v~~--~g--~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
|-+.|.+.+.+ .|. +|+++++|+++..+++ +.+..+.. +| +++.||.||-|-..... .+.+.
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~ 172 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY 172 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence 55566666654 464 6999999999987764 42222222 12 47899999999998664 55443
No 152
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.14 E-value=0.37 Score=46.77 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
.++..|.+.+.+. |++|+.+++|++|.. + .|.++++++.||+||+|+.++..
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChh
Confidence 4677888877765 999999999999952 3 25565556789999999999754
No 153
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.11 E-value=0.39 Score=48.78 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEccChhhH
Q 014827 136 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL 195 (418)
Q Consensus 136 ~~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~A~p~~~~ 195 (418)
..+.+.|.+.+.+ .|++|+.++.|++|..++ ++|.+|... + ..+.++.||+|+.....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 4588999998887 689999999999998765 677777653 2 36899999999998653
No 154
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.08 E-value=0.68 Score=48.21 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=47.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..|.+.|.+.+.+.|++|..++.|.++..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 356889998888888999999999999987644 77888765 243 578999999999865
No 155
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.94 E-value=0.53 Score=47.66 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEE---EC-Ce--EEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~---~~-g~--~~~ad~VV~A~p~~~~ 195 (418)
.|.++|.+.+.+ .|++|+++++|+.|..+++ +.+ .+. ++ ++ ++.||+||+|+.++..
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCE-EEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 477888888854 4899999999999987732 433 343 33 32 6899999999999874
No 156
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=91.93 E-value=0.53 Score=48.57 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHh---c-CcEEEcCceeeEEEecCCCCeEEEEEE---C---------------C-eEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVC---G---------------K-ETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~---~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~---------------g-~~~~ad~VV~A~p~~ 193 (418)
.+++.|.+.+++ . |++|+++++++++..++ |+|++|.. . + .++.|+.||+|+...
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf 226 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGI 226 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCc
Confidence 477888777652 3 58999999999998865 88999874 1 1 257899999999975
Q ss_pred h
Q 014827 194 T 194 (418)
Q Consensus 194 ~ 194 (418)
.
T Consensus 227 ~ 227 (549)
T PRK12834 227 G 227 (549)
T ss_pred c
Confidence 5
No 157
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.92 E-value=0.41 Score=48.93 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=46.8
Q ss_pred chhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~A~p~~~ 194 (418)
+..+.+.|.+.+.+. |++|+.++.|.+|..++ |+|.+|.. +++ ++.|+.||+|+....
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 346889998888765 89999999999998765 77878765 333 588999999999854
No 158
>PRK08275 putative oxidoreductase; Provisional
Probab=91.92 E-value=0.62 Score=48.11 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+++.|++|..++.|.+|..+++ |++.+|.. +|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 35889999989889999999999999988633 77777763 343 478999999999854
No 159
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.87 E-value=0.59 Score=39.40 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=30.2
Q ss_pred cCcEE-EcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccCh
Q 014827 149 RGCEF-LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 192 (418)
Q Consensus 149 ~G~~I-~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~ 192 (418)
.|++| +...+|..|...++ + ...+..+|..+.||+||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~-~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDD-G-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCC-c-EEEEECCCCEEEeCEEEECCCC
Confidence 35444 35679999999874 4 3333447888999999999874
No 160
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=91.85 E-value=0.68 Score=48.58 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..|.+.|.+.+.+.|++|..++.|.++..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 45889999988888999999999999887643 77888765 343 578999999999865
No 161
>PLN02507 glutathione reductase
Probab=91.82 E-value=0.65 Score=47.31 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=44.8
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
+...+.+.+.+.+++.|++|++++.|++|..++ +.+. +.. +|+++.+|.||++++..
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCC
Confidence 344577788888999999999999999998755 3343 445 56789999999998864
No 162
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=91.82 E-value=0.59 Score=45.68 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .|.+ +|+++.+|.||+|+....
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEE-EEEEcCCcEEECCEEEECcCCCc
Confidence 3456677788889999999999999998765 333 3555 577899999999998644
No 163
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.80 E-value=0.66 Score=46.69 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC---eEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ ++ +++.+|.||+|++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVT-VTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 3467788888999999999999999998765 4443 443 44 5789999999988653
No 164
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.73 E-value=0.54 Score=48.43 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+.|++|.+++.|+++..+++ ++|.+|.. +|+ ++.|+.||+|+....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 45888999888888999999999999988763 45777653 343 588999999999764
No 165
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=91.73 E-value=0.6 Score=48.86 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..|...|.+.+.+.|++|..++.|.++..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 46889999988889999999999999987433 78888764 343 578999999997653
No 166
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=91.52 E-value=0.69 Score=47.30 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecC-EEEEccChhh
Q 014827 136 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad-~VV~A~p~~~ 194 (418)
..+++.+.+.+.+. |++|+++++|++|..++ |+|++|.. +|+ ++.|+ .||+|+....
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 35888888777664 89999999999998875 78888866 343 57786 7999999853
No 167
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.51 E-value=0.45 Score=46.77 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHhhc
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK 200 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll~ 200 (418)
..+.+.+...+++.|+++++++.|.+++-+.+ |++.-|.+ +|.++.||.||+-+.+.-..+++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 34777888889999999999999999998776 78877777 688999999999998865544444
No 168
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.40 E-value=11 Score=39.75 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=34.5
Q ss_pred EEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhh
Q 014827 152 EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 152 ~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.|+.+++|++|..++ +.|+ |++ +|+++.+|.||.|-..+.. .+.+
T Consensus 208 ~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 208 VIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred EEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 478999999998776 5565 555 6778999999999998763 4433
No 169
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.39 E-value=0.83 Score=45.63 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|+++++++.|++|..++ +.+ .+..+|+++.+|.||+|+...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCC
Confidence 3466677777888999999999999998754 444 355677889999999998764
No 170
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=91.33 E-value=17 Score=36.29 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcC---cEEEcCceeeEEEec-----CCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhhc
Q 014827 137 KIFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G---~~I~l~t~V~~I~~~-----~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll~ 200 (418)
.|-+.|.+.+.+.+ ++|+.+++|.+|..+ +++..+ .|++ +|++++||.||-|=..... .+.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 36677777777765 799999999999853 111234 3555 6789999999999988764 55443
No 171
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.30 E-value=0.85 Score=45.89 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.. +| .++.+|.||+|++...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 3467778888999999999999999998765 4454 444 45 4799999999998643
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.29 E-value=0.7 Score=46.51 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
...+.+.+.+.+++.|++|++++.|++|..++ +.+. +++ +|+++.+|.||+|++...
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 34577888888999999999999999998765 3343 444 567899999999998654
No 173
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.07 E-value=0.82 Score=45.83 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=44.3
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
+...+.+.+.+.+++.|+++++++.|++|..+++ + + .+.+ +|+++.+|.||+|++..
T Consensus 205 ~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~-~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 205 FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD-G-L-KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-E-EEEEcCCcEeecCEEEEeeCCC
Confidence 3345667788888899999999999999987553 3 3 3444 57789999999998864
No 174
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=91.04 E-value=0.88 Score=47.96 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..|...|.+.+.+.|++|+.++.|.+|..++ |+|.++.. +|+ .+.|+.||+||....
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4577888888888999999999999999865 77777665 343 467999999999755
No 175
>PRK14694 putative mercuric reductase; Provisional
Probab=90.99 E-value=0.82 Score=46.14 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+.++++++.+|.||+|+....
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCCC
Confidence 4577888888999999999999999998765 433 3556666899999999997644
No 176
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=90.97 E-value=0.94 Score=45.46 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=45.0
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC-eEEecCEEEEccChhh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIST 194 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g-~~~~ad~VV~A~p~~~ 194 (418)
+...+.+.+.+.+++.|+++++++.|++|..+++ +.+ .+++ +| +++.+|.||++++...
T Consensus 205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCCc
Confidence 3445777888889999999999999999986542 433 3455 45 5699999999998654
No 177
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=90.95 E-value=0.86 Score=46.21 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=45.5
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
+...+.+.+.+.+++.|++|++++.|++|..+++ +.+ .+.+ +|+++.+|.||+++...
T Consensus 229 ~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 229 FDSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GSK-HVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceE-EEEEcCCCEEEcCEEEEeeCCC
Confidence 3455788889999999999999999999987643 433 3444 57789999999998854
No 178
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.89 E-value=0.93 Score=47.15 Aligned_cols=59 Identities=29% Similarity=0.364 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCC--CCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~--~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+.|++|..++.|.+|..+++ +|+|.++.. +|+ .+.|+.||+|+....
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46889999989889999999999999987541 156777764 344 578999999999865
No 179
>PRK07395 L-aspartate oxidase; Provisional
Probab=90.82 E-value=0.6 Score=48.15 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~A~p~~ 193 (418)
..+.+.|.+.+.+. |++|++++.|.++..++++|+|.+|.. +|+ .+.|+.||+|+...
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 46889999888754 899999999999987632267888765 344 47899999999984
No 180
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.81 E-value=0.77 Score=45.92 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+++++.+|.||+|+...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~ 253 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQ 253 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCC
Confidence 4477788888999999999999999998765 444 355555568999999998754
No 181
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.59 E-value=0.89 Score=49.33 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 199 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll 199 (418)
....+.+.+.++++|++|++++.|++|..+++ +.+..|.. +|+++.+|.||+|++...-..|+
T Consensus 187 ~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~ 250 (847)
T PRK14989 187 QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA 250 (847)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence 33556778888999999999999999976432 22344555 67889999999999875433444
No 182
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=90.57 E-value=1 Score=44.40 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll 199 (418)
.+.+.+.+.+++.|++|++++.|++|.. + +.+ .+.+ +|+++.+|.||+++....-..++
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~-~v~l~~g~~i~aD~Vv~a~G~~pn~~l~ 246 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKV-ELTLQSGETLQADVVIYGIGISANDQLA 246 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEE-EEEECCCCEEECCEEEECCCCChhhHHH
Confidence 3556677778889999999999999975 3 334 3444 67789999999999875433343
No 183
>PRK07804 L-aspartate oxidase; Provisional
Probab=90.54 E-value=0.77 Score=47.26 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-------C--eEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-------g--~~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+++.|++|+.++.|.+|..+++ |+|.++.+. + ..+.|+.||+|+....
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 45889999999889999999999999988754 677776542 2 3578999999999854
No 184
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.48 E-value=0.87 Score=45.93 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ +|+++.+|.||++++..
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEECCCcEEEecEEEEeecCC
Confidence 3466778888899999999999999998665 4443 444 67789999999998764
No 185
>PRK14727 putative mercuric reductase; Provisional
Probab=90.22 E-value=0.97 Score=45.77 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+++++.+|.||+|++...
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence 3467788888899999999999999998765 433 3555556789999999998754
No 186
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.02 E-value=23 Score=35.61 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=32.2
Q ss_pred CCCEEEeccccccCCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 338 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 338 ~~~l~laGd~~~~~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+|+.++||....-.|. .++.-|+.||..||+.|.+.+.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 46899999987644443 6899999999999999998775
No 187
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.70 E-value=1.1 Score=41.75 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
.+.+.+.+.+++.|+++++ +.|.+|..++ +.+ .|.+ +++++.+|+||+|+...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~-~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPF-KVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecC--Cee-EEEeCCCCEEEeCEEEECCCCC
Confidence 4778888888889999999 8999998765 433 4555 45789999999999974
No 188
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=89.68 E-value=1.3 Score=46.38 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
.+.+.|.+.+++.| ++|+.++.|.+|..++ ++|++|.. +++ ++.|+.||+|+....
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 57788888887776 9999999999998766 67777643 343 689999999999765
No 189
>PRK08071 L-aspartate oxidase; Provisional
Probab=89.25 E-value=0.8 Score=46.79 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+. .|++|+.++.|.+|..++ ++|.+|... |+ .+.|+.||+|+....
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 347788887775 589999999999998765 777777652 33 578999999998854
No 190
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.18 E-value=1.5 Score=44.13 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ +| +++.+|.||+++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVT-VTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEE-EEEEecCCCeEEEEeCEEEECcCcc
Confidence 3477888888999999999999999998654 4332 332 45 369999999998753
No 191
>PRK13748 putative mercuric reductase; Provisional
Probab=88.85 E-value=1.3 Score=45.74 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+++++.+|.||+|+....
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p 365 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCc
Confidence 3477888888999999999999999998765 444 3555556799999999998643
No 192
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=88.80 E-value=1.2 Score=44.26 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 199 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll 199 (418)
..+.+.+.+.+++.|+++++++.|.+|..+ +.+ .+..+|+++.+|.||++++...-..++
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE---ERV-KVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecC---CCE-EEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 346677888888999999999999999753 333 233467889999999999875433343
No 193
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=88.71 E-value=1.6 Score=44.11 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-C--C--eEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.. + | +++.+|.||++++..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVS-VAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEE-EEEEeCCCceeEEEcCEEEEccCCc
Confidence 3477788888989999999999999998765 4343 443 3 3 468999999998754
No 194
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.69 E-value=1.8 Score=44.91 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+ .|++|+.++.|.+|..++ |++.+|.. +|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4588888888766 589999999999998766 77777654 344 578999999999864
No 195
>PRK08163 salicylate hydroxylase; Provisional
Probab=88.61 E-value=1.5 Score=42.93 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
|.+.|.+.+.+.| ++|+.++.|++|..++ +.+. |++ +|+++.||.||.|...+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChH
Confidence 6677777777665 8999999999998766 4454 444 6778999999999988764
No 196
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.57 E-value=1.6 Score=45.83 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHhc--------C-----cEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~--------G-----~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~ 193 (418)
..+++.|.+.+.+. | ++|..++.|.+|..++ |+|.++.. +|+ .+.|+.||+|+...
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 212 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI 212 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence 45888898888776 6 8999999999998765 77777653 343 57999999999974
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.56 E-value=1.5 Score=44.88 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++++++++|++|..++ +.+ .|.+ +|+++.+|++|+|+...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETED--GLI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeE-EEEECCCCEEEeCEEEECCCCC
Confidence 3477888888888999999999999998765 333 4555 56789999999999985
No 198
>PRK09897 hypothetical protein; Provisional
Probab=88.38 E-value=1.6 Score=44.65 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhcC--cEEEcCceeeEEEecCCCCeEEEEEE-C-CeEEecCEEEEccCh
Q 014827 138 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGI 192 (418)
Q Consensus 138 l~~~l~~~l~~~G--~~I~l~t~V~~I~~~~~~g~v~~v~~-~-g~~~~ad~VV~A~p~ 192 (418)
..+.+.+.+.+.| ++|+.+++|+.|..++ +.+ .|++ + |+.+.||+||+|+..
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~-~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGV-MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEE-EEEECCCCeEEEcCEEEECCCC
Confidence 4455556666666 6888999999998876 444 4665 3 467999999999996
No 199
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=88.35 E-value=1.2 Score=44.27 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=41.7
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccCh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 192 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~ 192 (418)
+.+.+.+.+.+.++++|++|+++++|++|.. +.| +..+|+++.+|.||++++.
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~----~~v--~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD----KEV--VLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC----CEE--EECCCCEEEccEEEEccCC
Confidence 3455778888889999999999999999863 323 2336788999999999874
No 200
>PTZ00052 thioredoxin reductase; Provisional
Probab=88.25 E-value=1.8 Score=44.14 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
...+.+.+.+.+++.|++|++++.|.+|...+ +.+. +.. +|+++.+|.||+++....-
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIK-VLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEcCEEEEeeCCCCC
Confidence 34467888888999999999999999998655 3343 444 5778999999999987543
No 201
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=88.16 E-value=1.1 Score=46.10 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=41.3
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe---EEecCEEEEccChhhHHHhhcc
Q 014827 148 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 148 ~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~---~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
+.+.+|++++.|++|..++ +++++|++ +++ .+.++.||+|..+-.+.+||-.
T Consensus 206 r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~ 262 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL 262 (532)
T ss_pred CCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh
Confidence 4578999999999999976 78888887 332 3578999999999777666543
No 202
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=88.15 E-value=1.9 Score=43.44 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC--eEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+| +++.+|.||+|+...
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCc
Confidence 3467788888999999999999999998654 433 344455 368999999999854
No 203
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=87.72 E-value=1.7 Score=47.01 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
.+.+.+.+.++++|++|++++.|++|..++ ++..|++ +|+++.+|.||++++...
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCCc
Confidence 345667778889999999999999997533 3455665 677899999999999653
No 204
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.69 E-value=1.9 Score=44.14 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
.+.+.+.+.+++.|.+++++++|.+|..++ +.. .|.+ +|+++.+|.||+|+...
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~-~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLI-EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeE-EEEECCCCEEEcCEEEECCCCC
Confidence 478888888999999999999999998865 333 4555 56689999999999984
No 205
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=87.44 E-value=31 Score=33.93 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=32.2
Q ss_pred CCCEEEeccccccCCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 338 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 338 ~~~l~laGd~~~~~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+|+.++||....-.|. +++.-|+.||..||+.+.+.+.
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 47899999987644443 6899999999999999998765
No 206
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=87.39 E-value=2.4 Score=42.61 Aligned_cols=56 Identities=27% Similarity=0.277 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
.+-+-|.+...+.|++++.++ |.+|..+++ |.|+.|++ +|++++||.||=|+....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccc
Confidence 366677777888999999885 778887765 88888888 578899999999998765
No 207
>PTZ00058 glutathione reductase; Provisional
Probab=87.33 E-value=2.2 Score=44.06 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC-eEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|.+|..+++ +.+..+..++ +++.+|.||+++...
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcCCC
Confidence 44677888889999999999999999986542 3343222243 579999999998754
No 208
>PRK06370 mercuric reductase; Validated
Probab=87.21 E-value=2.3 Score=42.85 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-C-CeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~-g~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|.+|..+++ +....+.. + +.++.+|.||+|++..
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 34667788888899999999999999987652 32111222 2 3579999999999854
No 209
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=86.80 E-value=2 Score=44.02 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=39.3
Q ss_pred CcEEEcCceeeEEEecCCC-CeEEEEEE----CCe--EEecCEEEEccChhhHHHhhc
Q 014827 150 GCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELIK 200 (418)
Q Consensus 150 G~~I~l~t~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VV~A~p~~~~~~Ll~ 200 (418)
..+|++++.|.+|..++++ ++|++|.+ +|+ ++.|+.||+|+.+=...+||-
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 3799999999999987642 36777754 243 589999999999877777753
No 210
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.80 E-value=2.5 Score=42.84 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC---eEEecCEEEEccChh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 193 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~A~p~~ 193 (418)
...+.+.+.+.|++.|++|++++.|.+|...+ +.+. |+. ++ +++.+|.||+++...
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVK-VTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEE-EEEecCCcceEEEeCEEEEEecCC
Confidence 34567788888999999999999999998655 4343 443 33 379999999999864
No 211
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=86.69 E-value=2.5 Score=42.58 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCeEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+.+ +++++.+|.||+|+...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~-~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGK-IITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEE-EEEEEeCCCceEEEeCEEEEeECCC
Confidence 3466778888888999999999999998765 322 3433 13579999999998753
No 212
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=86.65 E-value=2.6 Score=42.54 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+++.|++|++++.|++|..+.+ +++..+.. +| +++.+|.||+|++...
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 34677888889999999999999999986211 23433433 45 3689999999998754
No 213
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=86.54 E-value=1.9 Score=48.76 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhc---CcEEEcCceeeEEEecCC---CC----eEEEEEE------CCe--EEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTR---GCEFLDGRRVTDFIYDEE---RC----CISDVVC------GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~---G~~I~l~t~V~~I~~~~~---~g----~v~~v~~------~g~--~~~ad~VV~A~p~~~ 194 (418)
.+.+.|.+.+++. |++|+++++|+++..+++ +| +|+||.. +|+ .+.|+.||+|+....
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 4777888877653 899999999999998641 02 7888875 233 578999999999755
No 214
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=86.22 E-value=2 Score=41.91 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=36.6
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 144 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 144 ~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
+.+++.|+++++++.|++|..++ . .|.++++++.+|++|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCC
Confidence 34566799999999999998755 3 245678899999999999975
No 215
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=86.21 E-value=2.5 Score=42.54 Aligned_cols=56 Identities=18% Similarity=-0.070 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCcE--EEcCceeeEEEecCCCCeEEEEEEC--C-e--EEecCEEEEccChhhH
Q 014827 137 KIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~--I~l~t~V~~I~~~~~~g~v~~v~~~--g-~--~~~ad~VV~A~p~~~~ 195 (418)
.+.+.|.+.+++.|.+ |++++.|++|...+ ++ |.|++. + . +..+|+||+|+.....
T Consensus 112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 4888888888888877 99999999999865 44 456552 2 2 4679999999997543
No 216
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.90 E-value=3.3 Score=41.78 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=42.7
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEE-EEE--CC--eEEecCEEEEccChh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVC--GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~-v~~--~g--~~~~ad~VV~A~p~~ 193 (418)
+...+.+.+.+.+++.|++|++++.|++|..+++ + +.. +.. +| +++.+|.||+++...
T Consensus 213 ~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 213 TDTETAKTLQKALTKQGMKFKLGSKVTGATAGAD-G-VSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCC-e-EEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 3344778888889999999999999999986542 3 321 221 22 478999999999864
No 217
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=85.80 E-value=3.1 Score=40.03 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=46.8
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-C---C--eEEecCEEEEccChh
Q 014827 132 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 132 gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~---g--~~~~ad~VV~A~p~~ 193 (418)
++|.-.+.+...+.|...|.+++++|+|..+..++| |.|. |++ + + ++++||.+.+++.=.
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~-i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPVE-IEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-CceE-EEEEecCCCceeEEEeeEEEEEccCc
Confidence 445555788888889999999999999999999887 6554 444 2 2 478999999988643
No 218
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=85.54 E-value=0.98 Score=43.72 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=52.7
Q ss_pred cCCcchhhHHHHHHH----HHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHHhhccc
Q 014827 131 RGTLREKIFEPWMDS----MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNS 202 (418)
Q Consensus 131 ~gG~~~~l~~~l~~~----l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~Ll~~~ 202 (418)
++.|+..|++.|.++ +++.|++|+-|+.|+++.... +.+ .+.+ +|.++..|.||+|+.-.--.+|....
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~s 457 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEAS 457 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cce-EEEecCCCeeeeeeEEEEecCCCchhhcccc
Confidence 467777777777664 678899999999999998866 444 3555 68899999999999876555555543
No 219
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=85.52 E-value=3.9 Score=42.54 Aligned_cols=58 Identities=26% Similarity=0.219 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..|.+.|.+.+.+. |++|..++.|.+|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356889998887664 78999999999999875 77887754 343 578999999998855
No 220
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=85.20 E-value=3.2 Score=43.21 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..|.+.|.+.+.+. +++|..++.|++|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45888888877664 78999999999999875 77777653 343 678999999998754
No 221
>PLN02815 L-aspartate oxidase
Probab=85.20 E-value=2.7 Score=43.81 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCC--eEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g--~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+. |++|..++.|.+|..+++++ +|.|+.. +|+ .+.|+.||+|+....
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 45888888888765 88999999999998764313 3677764 243 568999999999754
No 222
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=85.01 E-value=3.5 Score=41.32 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=44.9
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCe--EEecCEEEEccCh
Q 014827 133 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGI 192 (418)
Q Consensus 133 G~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~--~~~ad~VV~A~p~ 192 (418)
++..-+.+.+.+.+++.|.+|+++++|++++..++ + + .+.+ +|+ ++++|.|++|+.=
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~-~-v-~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDD-G-V-LVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCC-e-E-EEEEecCCCCEEEeeEEEEccCC
Confidence 34456888899999987899999999999998763 3 4 3555 344 7889999999974
No 223
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.68 E-value=3.4 Score=43.01 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHhcC----cEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G----~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..|.+.|.+.+.+.+ ++|..++.|.++..+++ |+|.+|.. +++ .+.|+.||+||....
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 458888887776544 67899999999987644 78888875 233 478999999999865
No 224
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=1.9 Score=38.23 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=50.5
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHhhcc
Q 014827 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 128 ~~~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
++|.|=.+..|.+.|.+..++.|.+|.+. .|+++..+. ... .+.++.+.+.+|.||+|+.+.+-+--++.
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF-~l~td~~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPF-KLWTDARPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCe-EEEecCCceeeeeEEEecccceeeeecCC
Confidence 45555333458899999988899998876 478888765 334 46678888999999999998654322443
No 225
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=84.56 E-value=1.8 Score=40.61 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhc------CcEEEcCceeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~------G~~I~l~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~A~p~~~~ 195 (418)
|+.+|...+++. -++|.++++|..|..++ |+|.+|.. +|+ .+.+|.||+|+.....
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 667776666432 36899999999999666 88999887 344 5789999999987654
No 226
>PLN02546 glutathione reductase
Probab=84.42 E-value=4 Score=42.14 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=43.4
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEE-ecCEEEEccChhh
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGIST 194 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~-~ad~VV~A~p~~~ 194 (418)
+...+.+.+.+.+++.|++|++++.|.+|..+++ +.+ .+..+++++ .+|.||++++...
T Consensus 291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence 3445667777888899999999999999986543 544 355554444 4899999998654
No 227
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=84.27 E-value=2.2 Score=41.99 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=33.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
+.+.++|||-+||. .|+. +++..|..+|..+|+.|+.+.+
T Consensus 445 ~~t~i~gLy~aGdG--AG~a-rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDG--AGLA-RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEcccc--cccc-chhHHHhhhhHHHHHHHHHHhc
Confidence 45789999999999 4444 7899999999999999998765
No 228
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=83.99 E-value=3.3 Score=42.89 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEEC-CeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~A~p~~~ 194 (418)
.+...+.+.+++. |++|+. ..|.++..+++ +++.+|.+. |..+.||.||+|+....
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 3556677777776 566654 46777776532 567888884 66899999999999985
No 229
>PRK10262 thioredoxin reductase; Provisional
Probab=83.67 E-value=2.3 Score=40.41 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-----C--eEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-----g--~~~~ad~VV~A~p~~~ 194 (418)
+.+.+.+.+++.|+++++++.|++|..++ +++.+|++. + +++.+|.||+++....
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 56677777888899999999999997654 335455441 1 3689999999987643
No 230
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=4.2 Score=38.47 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=44.6
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 134 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 134 ~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
.+..|.+.+.+.....|.++.. ..|.+++..+ . ...|.++.++++|++||+|+....-
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGAR 116 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCccc
Confidence 3445888998888888988887 7788887654 2 3457776666999999999998654
No 231
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=83.05 E-value=3.4 Score=39.97 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.++++|+++++++.|++|. + +. |.+ +|+++.+|.||++++...
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D--GA---LILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C--Ce---EEeCCCCEEecCEEEEccCCCh
Confidence 3466777888899999999999999885 2 32 334 678999999999998643
No 232
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.98 E-value=3.7 Score=41.16 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE
Q 014827 143 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 176 (418)
Q Consensus 143 ~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~ 176 (418)
.+.+++.|++|++++.+.+|..+++ |++++|.+
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~ 348 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKF 348 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEE
Confidence 3556778999999999999976543 66666544
No 233
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=82.96 E-value=28 Score=32.43 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEEC-----CeEEecCEEEEccChhhHHHhhcc
Q 014827 136 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G-~~I~l~t~V~~I~~~~~~g~v~~v~~~-----g~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
..+...|.+.+++.| +++.+| .|.+|..+. +++..+... ....+.+.+|+++.+|.-. |++.
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~ 214 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPF 214 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hccc
Confidence 357888888888776 788887 567776444 666555443 2356788999999999765 4443
No 234
>PRK09077 L-aspartate oxidase; Provisional
Probab=82.67 E-value=5.1 Score=41.25 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHhc-CcEEEcCceeeEEEecC----CCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~----~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
+..+.+.|.+.+.+. |++|..++.|.++..++ ++++|.+|.. +|+ .+.++.||+|+....
T Consensus 137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 137 GKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 345888888887765 79999999999988653 1167888765 243 578999999999865
No 235
>PRK07846 mycothione reductase; Reviewed
Probab=82.28 E-value=4.3 Score=40.72 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHH
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~ 196 (418)
..+.+.+.+.+ +.|+++++++.|++|..++ +.+ .+.+ +|+++.+|.||+|++...-.
T Consensus 207 ~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 207 DDISERFTELA-SKRWDVRLGRNVVGVSQDG--SGV-TLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC--CEE-EEEECCCcEeecCEEEEEECCccCc
Confidence 33555555433 5689999999999998765 444 3454 57789999999999865433
No 236
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=81.86 E-value=2.9 Score=45.19 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=37.0
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 143 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 143 ~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
.+.+++.|++++++++|++|..++ ..| +..+|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~~--k~V--~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTDQ--KQV--ITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECCC--CEE--EECCCcEeeCCEEEECCCCC
Confidence 445677899999999999998765 322 33467789999999999975
No 237
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.68 E-value=3.2 Score=40.84 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=35.4
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 146 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 146 l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
+.+.|+++++++.|..|..++ ..| +..+|+++.+|++|+||....
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~--~~v--~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDT--REL--VLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCC--CEE--EECCCCEEEcCEEEEccCCCC
Confidence 456789999999999998765 422 233677899999999999864
No 238
>PLN02661 Putative thiazole synthesis
Probab=81.13 E-value=6.3 Score=37.96 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=40.1
Q ss_pred hHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEEC---------C------eEEecCEEEEccC
Q 014827 138 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG---------K------ETYSAGAVVLAVG 191 (418)
Q Consensus 138 l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~~---------g------~~~~ad~VV~A~p 191 (418)
+.+.|.+.+.+ .|++|+.++.|.++..++ +++.+|..+ + ..+.|++||+||.
T Consensus 174 ~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 174 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 55667766544 688999999999999876 677787741 1 2589999999998
No 239
>PRK02106 choline dehydrogenase; Validated
Probab=81.09 E-value=2.4 Score=43.91 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=41.5
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe---EEecCEEEEccChhhHHHhhcc
Q 014827 148 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 148 ~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~---~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
+.+.+|++++.|++|..++ +++++|++ .++ .+.++.||+|+.+-.+.+||-.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~ 269 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQL 269 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhh
Confidence 4568999999999999986 67888887 222 3579999999998887777643
No 240
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=81.06 E-value=6.8 Score=40.94 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCC-CeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
.+...+.+.+.+.+++|..++.|.++..++++ |+|+||.. +|+ ++.|+.||+|+....
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 46666777777777899999999999986421 57888765 343 578999999999875
No 241
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=80.58 E-value=3.8 Score=41.42 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|||.+||.+. + + ..+..|+..|+.||..|...+.
T Consensus 428 Ts~~gVfa~GD~~~-g-~-~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRR-G-Q-SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCC-C-c-hhHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999852 2 2 3567789999999999988875
No 242
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=80.54 E-value=0.52 Score=46.97 Aligned_cols=56 Identities=29% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC----CeEEecCEEEEccChhhHHHhhcc
Q 014827 144 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 144 ~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~----g~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
+.+.+.|++|++++.|.++..++ ++|++|++. ..++.||.||=|+.-..+..+.+-
T Consensus 98 ~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 98 EMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 33456799999999999999987 788888874 347899999999997666655443
No 243
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=80.41 E-value=5.2 Score=40.19 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=27.8
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|+|.+||.+ .+. ..+..|+..|+.||..|...+.
T Consensus 415 Ts~~~VfA~GD~~-~~~--~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 415 TSLPGVFAGGDIV-TGA--ATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred cCCCCEEEeCCcC-CCc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888899884 222 3567788889999988888775
No 244
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=79.97 E-value=5.8 Score=41.19 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
+...|.+.+.+. |++| ..+.|.+|..++ ++|.+|.+ +|..+.|+.||+|+....
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 455666666655 6777 466799998876 67888887 577899999999999643
No 245
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=79.88 E-value=2.5 Score=39.81 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEccChhhHHHhhcc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~A~p~~~~~~Ll~~ 201 (418)
++-+.|...+++.||.+..+-+|.+....+ |+|+.|.+. . ..+.||.+|+|+.......|..+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 588999999999999999999999999988 788877774 2 35789999999988766555443
No 246
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=79.75 E-value=3.5 Score=39.67 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=36.4
Q ss_pred CCcchhhHHHHHHHHH------hcCcEEEcCceeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEccCh
Q 014827 132 GTLREKIFEPWMDSMR------TRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI 192 (418)
Q Consensus 132 gG~~~~l~~~l~~~l~------~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~A~p~ 192 (418)
+|++..+++.|.+.+- +...+|+.++.|+++..+++ |++ .+.+. + .++.+|.||+||..
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 5555667777766542 22368999999999998874 444 35542 2 46899999999974
No 247
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=79.36 E-value=9.7 Score=37.74 Aligned_cols=77 Identities=18% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCC-CCCCCEEEeccccccCCCccchHHHHHHHHHHHHH
Q 014827 292 AVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 370 (418)
Q Consensus 292 ~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~-~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~ 370 (418)
...++-++.|++..+++...-+. .... +...|... -+..+ ...+||||||+- ++. .+.+-|+.+|..|+..
T Consensus 287 ~Q~~~~r~Ipgle~a~~~r~G~~-~~~~-~i~~p~~l--~~~l~~k~~~~l~~AGqi--~g~--~Gy~ea~a~G~~Ag~n 358 (436)
T PRK05335 287 EQKRVFRMIPGLENAEFVRYGVM-HRNT-FINSPKLL--DPTLQLKKRPNLFFAGQI--TGV--EGYVESAASGLLAGIN 358 (436)
T ss_pred HHHHHHhcccchhceEEEeceEE-eecc-ccCChhhC--chhccccCCCCEEeeeee--cCc--hHHHHHHHHHHHHHHH
Confidence 34455667898875544322221 1111 11112111 11222 257999999999 444 3456788999999988
Q ss_pred HHHHhC
Q 014827 371 VVDYLG 376 (418)
Q Consensus 371 Il~~~~ 376 (418)
+...+.
T Consensus 359 ~~~~~~ 364 (436)
T PRK05335 359 AARLAL 364 (436)
T ss_pred HHHHhc
Confidence 877664
No 248
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=79.24 E-value=6.9 Score=39.50 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=28.8
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|||.+||.+ ..+ ..+..|+..|+.||+.|...++
T Consensus 429 T~~~gVfa~GD~~--~~~-~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAV--RGA-DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcC--CCc-cHHHHHHHHHHHHHHHHHHHhc
Confidence 4568899999985 222 3567799999999999888765
No 249
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=78.70 E-value=7.3 Score=39.13 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+ +.|.++++++.|++|..++ +.+. +.+ +|+++.+|.||++++...
T Consensus 210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQDG--DGVT-LTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC--CeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence 34555555433 4689999999999998765 4343 444 567899999999998643
No 250
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.66 E-value=4 Score=40.73 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=36.6
Q ss_pred HHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCeEEe--cCEEEEccChh
Q 014827 142 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYS--AGAVVLAVGIS 193 (418)
Q Consensus 142 l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~~~~--ad~VV~A~p~~ 193 (418)
..+.+.+.|+++++++.|.+|..++ ..| .+.. ++++++ +|++|+|+...
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v-~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTI-TVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEE-EEEECCCCCEEEecCCEEEECCCCC
Confidence 3455677899999999999998866 444 2433 255666 99999999974
No 251
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=78.64 E-value=5.3 Score=39.92 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
...+.+.+.+.+++.|+++++++.|++|. + ..+ +..+|+++.+|.||++++...
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~v--~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAIN--G--NEV--TFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C--CEE--EECCCCEEEeCEEEECcCCCc
Confidence 34567788888999999999999999985 2 222 223577899999999998654
No 252
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=78.49 E-value=5.4 Score=39.42 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.|.+.|.+.+. .+.|+++++|++|..+++ + + .|+. +|.++++|.||.|-..+.. .+.+
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~-~-~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAE-E-V-QVLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCC-c-E-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 36666666553 356899999999987663 3 4 3554 6778999999999998764 4444
No 253
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.46 E-value=5.6 Score=37.89 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=47.0
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 133 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 133 G~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
|+.+.+.+.+.+.++..|.++|.++.|+++...++ |....++..|....+|.++.|+.=.
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC-CceEEEEeccccccccEEEEEecCC
Confidence 45566778888889999999999999999998776 5344455567666799999999753
No 254
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=78.45 E-value=6.8 Score=38.27 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH-HHhh
Q 014827 138 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 138 l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
|-..|.+.+.+. |++|+.+++|++++.+++ .++ |++ +|.+++||.||.|...... .+.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNR-VTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEE-EEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 444565655543 689999999999998763 353 555 5779999999999998764 4444
No 255
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=78.07 E-value=9.3 Score=39.67 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=49.6
Q ss_pred HHHHHhhhhcCCCCceeeeeeEEEcCCCc--cccCCCCCCCCCCCCC-CCCCEEEeccccccCCCccchHHHHHHHHHHH
Q 014827 292 AVSYLSKCIKDFSTATVMDHKIRRFPKSL--THFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 368 (418)
Q Consensus 292 ~~~~L~~~~p~~~~~~~~~~~v~r~~~a~--~~~~pg~~~~r~~~~~-~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA 368 (418)
+..++-+..|++..+++. +.-.+. -.+.|- ...+..++ .++||||||+- .|+ .+.+.|..+|..|+
T Consensus 315 ~q~~i~~~ipGle~a~~~-----r~gy~~e~~~i~p~--~l~~~le~k~~~gLf~AGqi--~Gt--~Gy~eAaa~Gl~Ag 383 (617)
T TIGR00136 315 VQLQIVRSIPGLENAEIL-----RPGYAIEYDFFDPR--QLKPTLETKLIQGLFFAGQI--NGT--TGYEEAAAQGLMAG 383 (617)
T ss_pred HHHHHHHcCcCcccceEe-----ccccceEEeEEChh--hCchhheeCCCCCeEEcccc--CCc--chHHHHHHHHHHHH
Confidence 445555668888754332 221111 111121 11233333 47999999997 554 35788889999998
Q ss_pred HHHHHHhCCCCccccccCCCCChhHHHH
Q 014827 369 NRVVDYLGDGSFSKIIPVEEDEPHIEAL 396 (418)
Q Consensus 369 ~~Il~~~~~~~~~~~~~~~~~~~~~~~~ 396 (418)
-.+...+.. .+..+.+ .+++=+++|
T Consensus 384 ~naa~~~~~-~~~~~l~--r~~~yiGvl 408 (617)
T TIGR00136 384 INAALKLQN-KEPFILK--RSEAYIGVL 408 (617)
T ss_pred HHHHHHhcC-CCCCCCC--cccchHhHH
Confidence 766655542 3333444 444434443
No 256
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=77.99 E-value=6 Score=38.66 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEE---EEEECCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS---DVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~---~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
.+.+.+.+.++++|+++++++.|.+|+..+ +.++ .+..++..+.+|.++++++...
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEGKG--NTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEccc--CcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 478888889999999999999999999866 3333 2444678899999999997654
No 257
>PRK12831 putative oxidoreductase; Provisional
Probab=77.84 E-value=6.7 Score=39.54 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|||.+||-+ .+. ..+..|+..|+.||..|...+.
T Consensus 424 Ts~pgVfAaGD~~-~g~--~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAV-TGA--ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCC-CCc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999985 222 4678899999999999988775
No 258
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=77.13 E-value=8.9 Score=34.21 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC------------CeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~------------g~~~~ad~VV~A~p~~~ 194 (418)
++..|+...-+.|.+|..++.|+.|...++ .+|.+|.++ --+++++.||-||....
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 566666666678999999999999998874 378888764 13678888888887654
No 259
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=77.00 E-value=3.8 Score=39.69 Aligned_cols=52 Identities=23% Similarity=0.177 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
+...+.+.+++.|++++.+ .|++|..++ .. |.+ +|+++.+|++|+|+.....
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~--~~---V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR--RK---VLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc--CE---EEECCCCcccccEEEEccCCCCC
Confidence 4444555666779998876 799998765 42 344 5678999999999997643
No 260
>PRK07236 hypothetical protein; Provisional
Probab=76.16 E-value=7.3 Score=38.07 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
+.+.|.+.+ .+.+|+.++.|++|+.++ +.|+ |+. +|++++||.||.|=.....
T Consensus 102 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 102 LYRALRAAF--PAERYHLGETLVGFEQDG--DRVT-ARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCCch
Confidence 445554433 246799999999999876 4454 555 6788999999999777553
No 261
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.92 E-value=8.6 Score=40.67 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=31.0
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|||.+||-+ .+ + ..+..|+..|+.||..|...++
T Consensus 615 Ts~~gVfAaGD~~-~g-~-~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAV-RG-A-DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcC-CC-C-cHHHHHHHHHHHHHHHHHHHhC
Confidence 5678999999995 22 2 4678899999999999998876
No 262
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=75.23 E-value=7.7 Score=39.68 Aligned_cols=51 Identities=12% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE-C---C--eEEecCEEEEccChhh
Q 014827 142 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 142 l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~---g--~~~~ad~VV~A~p~~~ 194 (418)
+.+.+++ .|++|++++.|++|..++ +++.+|++ + | +++.+|.||+++....
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 4555665 599999999999998654 55665654 1 2 4689999999987643
No 263
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=73.48 E-value=5.2 Score=34.70 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeE----EEE---EE-CCeEEecCEEEEccChh
Q 014827 141 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCI----SDV---VC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 141 ~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v----~~v---~~-~g~~~~ad~VV~A~p~~ 193 (418)
.+.+.+...+.++++++.|.+|.... +.+ ..+ .. ++.++.+|+||+|+...
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCccc
Confidence 44555566789999999999998876 432 112 12 34589999999999843
No 264
>PRK05868 hypothetical protein; Validated
Probab=73.48 E-value=9.1 Score=37.27 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=38.2
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh-HHHhhc
Q 014827 148 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 148 ~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
..|++|++++.|++|..++ +.|+ |+. +|++++||.||-|=.... +.+.+.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~--~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG--DSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred cCCcEEEeCCEEEEEEecC--CeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 3578999999999998765 4454 555 677899999999998866 455553
No 265
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=72.52 E-value=13 Score=38.19 Aligned_cols=59 Identities=19% Similarity=0.083 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCc--EEEcCceeeEEEecCC---CCeEEEEEEC--Ce--EEecCEEEEccChhhHH
Q 014827 137 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE---RCCISDVVCG--KE--TYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~--~I~l~t~V~~I~~~~~---~g~v~~v~~~--g~--~~~ad~VV~A~p~~~~~ 196 (418)
.+.+.|...+++.+. .|++||.|.+|+..++ +|+ |.|+++ |+ +..+|+||+|+......
T Consensus 85 ~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 85 EVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp HHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred HHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 477888888777664 6999999999997653 133 567663 43 45789999999976543
No 266
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=72.12 E-value=6.5 Score=38.45 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHhhhhcCCCCceeeeee-EEEcCCCccccCCCCCCCCCCCCC-CCCCEEEeccccccCCCccchHHHHHHHHHHHH
Q 014827 292 AVSYLSKCIKDFSTATVMDHK-IRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 369 (418)
Q Consensus 292 ~~~~L~~~~p~~~~~~~~~~~-v~r~~~a~~~~~pg~~~~r~~~~~-~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~ 369 (418)
+..++-+..|++..+++...- .++.. +..++ . ..+.+++ .++|||+||+- +|. .+.+-|+.+|..|+.
T Consensus 313 ~Q~~~~r~IpGLe~a~~~r~Gy~~ey~---~v~~~-~--l~~~l~~k~~~~lf~AGqi--~G~--~Gy~eaaa~G~~ag~ 382 (392)
T PF01134_consen 313 VQKRIFRSIPGLENAEILRPGYAHEYD---FVDPP-Q--LLNTLETKKIPGLFFAGQI--NGT--EGYEEAAAQGLIAGI 382 (392)
T ss_dssp HHHHHHTTSTTTTT--EEE--EEEEEE---EE-GG-G--BBTTSBBSSSBTEEE-GGG--GTB---SHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCChhcChhhheEEeeeee---EEehh-h--cccceEECCCCCceECCCC--cch--hHHHHHHHHHHHHHH
Confidence 445566778988755433211 11110 01111 1 1123333 48999999999 444 245667779999988
Q ss_pred HHHHHhC
Q 014827 370 RVVDYLG 376 (418)
Q Consensus 370 ~Il~~~~ 376 (418)
.+...+.
T Consensus 383 na~~~~~ 389 (392)
T PF01134_consen 383 NAARRLQ 389 (392)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7776653
No 267
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=71.94 E-value=9.5 Score=37.87 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEEC--CeEEe--cCEEEEccChh
Q 014827 146 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 193 (418)
Q Consensus 146 l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~--g~~~~--ad~VV~A~p~~ 193 (418)
+.+.|+++++++.|++|..++ +.+ .+..+ ++++. +|+||+|+...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~--~~v-~~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDER--QTV-VVRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCC--CEE-EEEECCCCCEEecCCCEEEECCCCC
Confidence 367799999999999998765 544 24433 45677 99999999973
No 268
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=71.78 E-value=16 Score=32.62 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-------C-----eEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~A~p~~~ 194 (418)
.++..|+.+.-+.|++|...+.|+.+...++ ++|.+|..+ | -+++++.||-||..+.
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 3666666666678999999999999988775 689888774 2 3789999999997654
No 269
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=71.74 E-value=11 Score=34.88 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEccChh
Q 014827 139 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 139 ~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~A~p~~ 193 (418)
...+.+.+++. |+++++++.|++|..++ ++..++. ++ +++.+|.||++++..
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 34556677777 99999999999997543 3444443 12 468999999998854
No 270
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=71.67 E-value=20 Score=37.32 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=47.0
Q ss_pred HHHHHhhhhcCCCCceeeeeeEEEcCCCc-cccC-CCCCCCCCCCC-CCCCCEEEeccccccCCCccchHHHHHHHHHHH
Q 014827 292 AVSYLSKCIKDFSTATVMDHKIRRFPKSL-THFF-PGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 368 (418)
Q Consensus 292 ~~~~L~~~~p~~~~~~~~~~~v~r~~~a~-~~~~-pg~~~~r~~~~-~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA 368 (418)
+..++-+..|++..++ +.|.-.++ +.|. |.. ..+.++ ..++||||||.- +|+. +-|-|..+|..|+
T Consensus 317 ~Q~~~~r~ipGle~a~-----i~r~gy~ieyd~i~p~~--L~~~Le~k~~~~lf~AGQi--nGt~--GYeEaaaqGl~Ag 385 (618)
T PRK05192 317 VQLEMLRSIPGLENAE-----ILRPGYAIEYDYVDPRQ--LKPTLETKKIKGLFFAGQI--NGTT--GYEEAAAQGLIAG 385 (618)
T ss_pred HHHHHHhcCcCcccee-----EeecccceeecccChhh--cchhheecCCCCeEECccc--CCCh--HHHHHHHHHHHHH
Confidence 4455667788886433 33343333 2221 222 234444 357999999999 4553 4466666666665
Q ss_pred HHHHHHhCCCCccccccCCCCChhHHHH
Q 014827 369 NRVVDYLGDGSFSKIIPVEEDEPHIEAL 396 (418)
Q Consensus 369 ~~Il~~~~~~~~~~~~~~~~~~~~~~~~ 396 (418)
-.....+. ....+.+ .+++=+++|
T Consensus 386 iNaa~~~~--~~~~~~~--r~~~yiGvl 409 (618)
T PRK05192 386 INAALKVQ--GEPFILK--RSEAYIGVL 409 (618)
T ss_pred HHHHHHhc--CCCCCCC--cchhhHHHH
Confidence 44433333 2333444 444444443
No 271
>PRK12831 putative oxidoreductase; Provisional
Probab=71.57 E-value=6.1 Score=39.84 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECC--eEEecCEEEEccChh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VV~A~p~~ 193 (418)
+.+...+.+++.|++|++++.|.. .+ ..++ +.+.+|+||+|+.++
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~--------~v---~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK--------TV---TIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC--------cC---CHHHHHhccCCCEEEEeCCCC
Confidence 555556677788899999986631 11 1111 235699999999984
No 272
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.48 E-value=7.6 Score=37.39 Aligned_cols=43 Identities=33% Similarity=0.295 Sum_probs=28.6
Q ss_pred CcEEEcCceeeEEEecCCCC-eEEEEEE-----CCeEEecCEEEEccCh
Q 014827 150 GCEFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGI 192 (418)
Q Consensus 150 G~~I~l~t~V~~I~~~~~~g-~v~~v~~-----~g~~~~ad~VV~A~p~ 192 (418)
+..++.+++|++|...++++ ..+.|++ +++++.|++||++++.
T Consensus 109 ~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 109 DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 33489999999999876411 2456776 3468999999999984
No 273
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=71.35 E-value=8.2 Score=42.04 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=36.0
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 143 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 143 ~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
.+.+++.|+++++++.|.+|..+. . + |.+ +|+++.+|++|+||...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~~--~-~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQE--K-V--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCCC--c-E--EEECCCcEEECCEEEECCCCC
Confidence 344567899999999999998754 3 2 344 56789999999999975
No 274
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=71.28 E-value=7.2 Score=39.48 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=36.6
Q ss_pred HHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhHHH
Q 014827 140 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE 197 (418)
Q Consensus 140 ~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~~~ 197 (418)
+.+.+.++.. +..|. ...|+.|..+++ .+|++|.+ +|..+.|++||+|+....-.+
T Consensus 104 ~~mk~~le~~~NL~l~-q~~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~ 161 (621)
T COG0445 104 RAMKNELENQPNLHLL-QGEVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFLRGK 161 (621)
T ss_pred HHHHHHHhcCCCceeh-HhhhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccccce
Confidence 3444445433 23433 346777777662 35888888 578999999999998765443
No 275
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=71.27 E-value=14 Score=37.01 Aligned_cols=58 Identities=24% Similarity=0.147 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEEC-CeE--EecCEEEEccChhhHH
Q 014827 138 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGISTLQ 196 (418)
Q Consensus 138 l~~~l~~~l~~~G~--~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~--~~ad~VV~A~p~~~~~ 196 (418)
+-+.+...+++.+. +|+.+++|+.+..+.+ ++.|.|+++ |.+ ++||.||+|+......
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P 146 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHLSEP 146 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCCCCC
Confidence 67777788887765 6899999999988876 556778774 333 5699999999984443
No 276
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.59 E-value=6.2 Score=41.73 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=11.0
Q ss_pred ecCEEEEccChhhH
Q 014827 182 SAGAVVLAVGISTL 195 (418)
Q Consensus 182 ~ad~VV~A~p~~~~ 195 (418)
.+|+||+|+.....
T Consensus 412 ~~DavilAtGa~~~ 425 (654)
T PRK12769 412 DYDAVFVGVGTYRS 425 (654)
T ss_pred cCCEEEEeCCCCCC
Confidence 58999999987643
No 277
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.55 E-value=17 Score=36.70 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-C--C--eEEecCEEEEccChhh
Q 014827 135 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 135 ~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VV~A~p~~~ 194 (418)
...+.+.+.+.+++. ++|++++.|++|..++ +.+. +.+ + + +++.+|.||++++...
T Consensus 214 d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 214 DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIY-VTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEE-EEEEeCCCcceEEEeCEEEEeecccc
Confidence 344667777888877 9999999999998765 3343 443 2 2 3699999999998743
No 278
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=70.44 E-value=4.7 Score=42.14 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=41.6
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhh
Q 014827 141 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 194 (418)
Q Consensus 141 ~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~ 194 (418)
.|.+.+++.|.++++++.+++|..+ +++.++.. +|..+.||-||+|+...-
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEeccccc
Confidence 4556678889999999999999873 45778887 577899999999998643
No 279
>PTZ00367 squalene epoxidase; Provisional
Probab=70.23 E-value=1.4e+02 Score=30.99 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCCEEEeccccccCCCc--cchHHHHHHHHHHHHHHHH
Q 014827 338 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 338 ~~~l~laGd~~~~~~g~--~~~egAi~SG~~aA~~Il~ 373 (418)
.+|+.+.||..++-+|. .+|.-|++.+...++.+..
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 47899999998876665 6788899999988888754
No 280
>PRK06475 salicylate hydroxylase; Provisional
Probab=69.81 E-value=18 Score=35.59 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEE---C-CeEEecCEEEEccChhhH-HHhh
Q 014827 137 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL-QELI 199 (418)
Q Consensus 137 ~l~~~l~~~l~~~-G~~I~l~t~V~~I~~~~~~g~v~~v~~---~-g~~~~ad~VV~A~p~~~~-~~Ll 199 (418)
.|.+.|.+.+.+. |++|+++++|+++..++ +.++ ++. + +++++||.||-|=..+.. .+.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 4667777777653 78999999999998766 4453 333 3 347899999999998764 5555
No 281
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=69.67 E-value=7.1 Score=39.18 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=30.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+|..+|||.+||.+ .+. ..+..|+..|+.||..|...+
T Consensus 411 ~~Ts~~~VfA~GD~~-~g~--~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDII-LGA--ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCC-CCc--HHHHHHHHHHHHHHHHHHhhC
Confidence 356789999999995 222 467889999999999997653
No 282
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=69.30 E-value=6.3 Score=36.18 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCCCEEEecccccc---CCCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 337 SFPNLFMAGDWITT---RHGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 337 ~~~~l~laGd~~~~---~~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
-+||||.||-.+.. .+.+ ...-+-+.||++||+.|+++++
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 46999999988642 2222 3456677899999999998863
No 283
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=69.23 E-value=15 Score=37.97 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
.+.+.+.+.+++.|++++ ++.|.+|..++ . .+.|.+.++++.+|+||+|+.+.
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~-~~~V~~~~g~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--D-IKTIKTARGDYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC--C-EEEEEecCCEEEEeEEEECCCCc
Confidence 477788888888899985 77899998754 3 33466665678999999999985
No 284
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=68.92 E-value=17 Score=36.16 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=40.0
Q ss_pred HHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCCC-CCCCCEEEeccccccCCCccchHHHHHHHHHHHHH
Q 014827 292 AVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 370 (418)
Q Consensus 292 ~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~~-~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~ 370 (418)
...++-+..|++..++++-.-+. .... +...|.. ..+..+ ..++||||||.- +|+- +-+-|+.+|..|+-.
T Consensus 286 ~Q~~~~r~ipgle~a~~~r~g~~-~~~~-~i~~p~~--L~~~l~~k~~~~lf~AGQi--~G~~--GY~Eaaa~Gl~agin 357 (433)
T TIGR00137 286 EQKRVFRLIPGLENAEFVRMGVM-HRNT-FINSPQL--LTASLHFKDRQTLFFAGQL--TGVE--GYVASTAGGWLAGIN 357 (433)
T ss_pred HHHHHHhcCcCccceEEeecceE-Eeee-eeCCHHH--hhHHhccCCCCCEEECccc--ccch--HHHHHHHHHHHHHHH
Confidence 44456668899875544322111 1011 1111121 112232 357999999999 4443 345566777777765
Q ss_pred HHHHhC
Q 014827 371 VVDYLG 376 (418)
Q Consensus 371 Il~~~~ 376 (418)
....+.
T Consensus 358 a~~~~~ 363 (433)
T TIGR00137 358 AARLAL 363 (433)
T ss_pred HHHHHc
Confidence 555543
No 285
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=68.31 E-value=8 Score=39.05 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
+.+...+.+.+.|+++++++.|.. ..+. +.....+|+||+|+...
T Consensus 195 ~~~~~~~~~~~~gv~~~~~~~v~~-~~~~----------~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 195 VIDRRIELMEAEGIEFRTNVEVGK-DITA----------EELLAEYDAVFLGTGAY 239 (471)
T ss_pred HHHHHHHHHHhCCcEEEeCCEECC-cCCH----------HHHHhhCCEEEEecCCC
Confidence 344445556667777777776532 1110 01123689999999886
No 286
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=67.94 E-value=9.2 Score=38.59 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~ 195 (418)
+.+...+.+++.|+++++|+.|..-. ..++....+|+||+|+.....
T Consensus 193 ~~~~~~~~~~~~Gv~~~~~~~v~~~~-----------~~~~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 193 VLSRRREIFTAMGIEFHLNCEVGRDI-----------SLDDLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHHHCCCEEECCCEeCCcc-----------CHHHHHhcCCEEEEEeCCCCC
Confidence 44555666778888888888773211 011112368999999998754
No 287
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=67.84 E-value=6.7 Score=36.10 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=30.2
Q ss_pred CCCCEEEecccccc---CCCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 337 SFPNLFMAGDWITT---RHGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 337 ~~~~l~laGd~~~~---~~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
-+||||.||-.+.. .+.+ ...-|-+.||++||+.|+++++
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 46999999987642 2222 3456678899999999999986
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.18 E-value=14 Score=36.81 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.4
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEccChhh
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~A~p~~~ 194 (418)
++.|++++++++|.+|..++ ..|. +..+ ++ ++.+|++|+|+....
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER--QTVT-VLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC--CEEE-EEECCCCcEEeeecCEEEECCCCCC
Confidence 45689999999999998876 5442 3332 23 468999999999754
No 289
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.00 E-value=19 Score=39.64 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhc----CcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~~----G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+.+.|.+.+.+. ++++..++.+.++..++ |+|.|+.. +|+ .+.|+.||+||....
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 45777888877654 45666666666777665 77888764 354 478999999999754
No 290
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=66.80 E-value=7.6 Score=37.87 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCCCEEEecccccc---CCCccchHHHHHHHHHHHHHHHHHh
Q 014827 336 TSFPNLFMAGDWITT---RHGSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 336 ~~~~~l~laGd~~~~---~~g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.-+|||||||+-+.. ..|+ .+.-|..||+.|++.+...+
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGY-NLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGY-LLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCH-HHHHHHHHHHHHHHHHHHhh
Confidence 357999999998642 1222 57899999999999887654
No 291
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.73 E-value=16 Score=38.56 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=30.1
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|||.+||-+ .+ . ..+..|+..|+.||+.|...+.
T Consensus 598 Ts~~gVfA~GD~~-~g-~-~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAV-HG-A-DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCC-CC-c-hHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999985 22 2 4668899999999999988875
No 292
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=66.62 E-value=22 Score=35.61 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEccChh
Q 014827 136 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 136 ~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~A~p~~ 193 (418)
..+.+.+.+.+++. ++|+++++|.+|..+++ ..++ ++. ++ +++.+|.||+++...
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~-~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVE-ELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEE-EEEcCCceEEEEeCEEEEccCCc
Confidence 34667777788888 99999999999986542 2342 222 33 479999999998764
No 293
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=66.43 E-value=16 Score=39.34 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=29.3
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|..+|||.+||-+ .+ + ..+..|+..|+.||..|.+.+.
T Consensus 713 Ts~~gVfA~GD~~-~g-~-~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIV-RG-G-ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCcc-CC-c-HHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999985 22 2 4677899999999999988764
No 294
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.47 E-value=18 Score=35.31 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=40.8
Q ss_pred CcchhhHHHHHHHHH-------hcCcEEEcCceeeEEEecCCCCeEEEEEE----C--CeEEecCEEEEccChh
Q 014827 133 TLREKIFEPWMDSMR-------TRGCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGIS 193 (418)
Q Consensus 133 G~~~~l~~~l~~~l~-------~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~--g~~~~ad~VV~A~p~~ 193 (418)
|.+..++..+-+.+= +..+.+..++.|++++.+++ |++ .+.+ . .++++.|.||+||.-.
T Consensus 268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 344445555555441 23467899999999998886 764 3444 1 2478999999999987
No 295
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=65.36 E-value=6.5 Score=35.04 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.1
Q ss_pred CCCCEEEeccccccC---CCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 337 SFPNLFMAGDWITTR---HGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 337 ~~~~l~laGd~~~~~---~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
-.||||.||-.+..- +.+ ...-|-+.||+.||+.|++++.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 469999999886422 222 3456678899999999999886
No 296
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.39 E-value=16 Score=37.49 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=37.4
Q ss_pred HHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEccChh
Q 014827 141 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 141 ~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~A~p~~ 193 (418)
.+.+.+.+ .|++|++++.|.+|..++ +++.++++ +| +++.+|.|++++...
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 34455554 589999999999998654 56666654 23 368999999998764
No 297
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=64.33 E-value=12 Score=36.14 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=31.1
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++..+|+|.+||.+ ..+ ..+..|+..|..||+.|.+.+.
T Consensus 312 ~t~~~~vyaiGD~~--~~~-~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 312 MTSREGVFAAGDVV--TGP-SKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred ccCCCCEEEEcccc--cCc-chHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999984 323 4678899999999999988763
No 298
>PRK10262 thioredoxin reductase; Provisional
Probab=64.31 E-value=25 Score=33.23 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
.+.+.+.+.+...+.+++.+ .|++|...+ +.+ .+..+.+.+.+|+||+|+....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~-~v~~~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQN--RPF-RLTGDSGEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecC--CeE-EEEecCCEEEECEEEECCCCCC
Confidence 35667777777777788776 577787765 433 3554455789999999999863
No 299
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=62.58 E-value=14 Score=36.74 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccCh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 192 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~ 192 (418)
+....-+..++.|.++++++.|+++.... .+ .+..+|+++.+++.|+||..
T Consensus 129 ~a~r~~e~Yke~gIe~~~~t~v~~~D~~~--K~--l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 129 LAKRTPEFYKEKGIELILGTSVVKADLAS--KT--LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ccccChhhHhhcCceEEEcceeEEeeccc--cE--EEeCCCceeecceEEEeecC
Confidence 33344456778899999999999999876 42 24447899999999999988
No 300
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=62.39 E-value=26 Score=39.12 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-----CCeEEecCEEEEccChhhHHHh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----GKETYSAGAVVLAVGISTLQEL 198 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-----~g~~~~ad~VV~A~p~~~~~~L 198 (418)
+...+.+.+++.|++|++++.|.+|.-+ +++.+|++ +++++.+|.|+++.+...-.+|
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 4556677788899999999999999753 33444443 2457899999999886443333
No 301
>PRK13984 putative oxidoreductase; Provisional
Probab=62.24 E-value=20 Score=37.49 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=27.7
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|+.+|+|.+||-+ ..+ .+-.|+..|+.||..|...+.
T Consensus 566 Ts~~gVfAaGD~~--~~~--~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIV--HGP--DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcC--Cch--HHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999985 222 345689999999999887764
No 302
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=62.12 E-value=31 Score=36.48 Aligned_cols=57 Identities=4% Similarity=-0.008 Sum_probs=39.3
Q ss_pred hhhHHHHHHHH-HhcCcEEEcCceeeEEEecCCCCe-EEEEEE-C---C------------eEEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCC-ISDVVC-G---K------------ETYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l-~~~G~~I~l~t~V~~I~~~~~~g~-v~~v~~-~---g------------~~~~ad~VV~A~p~~~ 194 (418)
..+.+.+.+.+ ++.|++|++++.|++|..+++ +. +. +.+ + + +++++|.||+|+....
T Consensus 353 ~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~-~~~v~-v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 353 ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG-NQPVI-IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEE-EEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 34556666654 568999999999999986542 22 32 322 1 1 2699999999998654
No 303
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=62.03 E-value=11 Score=39.65 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChhhH
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 195 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~~~ 195 (418)
+.-.--.+.+++|+++++|.+|..|..++ . .|++ .|.++.+|.+|+|+....+
T Consensus 61 i~l~~~dwy~~~~i~L~~~~~v~~idr~~--k---~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 61 ISLNRNDWYEENGITLYTGEKVIQIDRAN--K---VVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HhccchhhHHHcCcEEEcCCeeEEeccCc--c---eEEccCCcEeecceeEEecCcccc
Confidence 44344456788999999999999999865 3 2445 5889999999999988664
No 304
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.02 E-value=24 Score=33.99 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-------------------C--CeEEecCEEEEccChh
Q 014827 140 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------G--KETYSAGAVVLAVGIS 193 (418)
Q Consensus 140 ~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-------------------~--g~~~~ad~VV~A~p~~ 193 (418)
..+.+.++++|++|++++.|.+|..++ ++..|.. + ++++.+|.||+++...
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGEG---RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecCC---cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 344566888999999999999987432 2333321 2 2478999999998864
No 305
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=61.95 E-value=15 Score=35.89 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC----------------CeEEecCEEEEccChh--hHHHhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------------KETYSAGAVVLAVGIS--TLQELI 199 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~----------------g~~~~ad~VV~A~p~~--~~~~Ll 199 (418)
++.-|.+..++.|++|.-+..+.+|..++| |.|.+|.++ |-+++|..-|+|-.-. ...+++
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 677788888999999999999999999987 889888773 1257788888886653 234444
Q ss_pred c
Q 014827 200 K 200 (418)
Q Consensus 200 ~ 200 (418)
.
T Consensus 264 k 264 (621)
T KOG2415|consen 264 K 264 (621)
T ss_pred H
Confidence 3
No 306
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.84 E-value=14 Score=41.24 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
.+|+++|||.+||.+ ++ + .++-.|+..|+.||..|...+..
T Consensus 716 ~~Ts~pgVFAaGDv~-~G-~-~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIV-TG-G-ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcC-CC-c-cHHHHHHHHHHHHHHHHHHHHhc
Confidence 357889999999995 23 2 47789999999999999998864
No 307
>PLN02661 Putative thiazole synthesis
Probab=61.41 E-value=11 Score=36.37 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=30.8
Q ss_pred CCCCEEEecccccc---CCCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 337 SFPNLFMAGDWITT---RHGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 337 ~~~~l~laGd~~~~---~~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
-+||||.||-.+.. .+.+ ...-|-+.||++||+.|+++++
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 46999999988642 2222 3456678899999999999998
No 308
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.68 E-value=12 Score=39.48 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.5
Q ss_pred EecCEEEEccChhhH
Q 014827 181 YSAGAVVLAVGISTL 195 (418)
Q Consensus 181 ~~ad~VV~A~p~~~~ 195 (418)
..+|+||+|+.....
T Consensus 394 ~~~DaV~latGa~~~ 408 (639)
T PRK12809 394 SEYDAVFIGVGTYGM 408 (639)
T ss_pred hcCCEEEEeCCCCCC
Confidence 358999999987643
No 309
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=60.59 E-value=12 Score=37.61 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
.+.+...+.+.+.|+++++++.|... +.+++....+|+||+|+...
T Consensus 191 ~~~~~~~~~l~~~gv~~~~~~~v~~~-----------v~~~~~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 191 DIVDREVERLLKLGVEIRTNTEVGRD-----------ITLDELRAGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEECCc-----------cCHHHHHhhCCEEEEccCCC
Confidence 35566666777788888888876321 11111225799999999985
No 310
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=60.20 E-value=13 Score=37.83 Aligned_cols=39 Identities=33% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
+|..+|+|.+||.+ .+ . ..+..|+..|+.||..|...+.
T Consensus 441 ~Ts~~gVfAaGD~~-~g-~-~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 441 STSIPGVFAAGDCR-RG-Q-SLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred eECCCCEEEeeccC-CC-c-HHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999985 22 2 3567799999999999999885
No 311
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=59.84 E-value=26 Score=35.15 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=47.9
Q ss_pred ecCCcchhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE--C-C--eEEecCEEEEccCh
Q 014827 130 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVGI 192 (418)
Q Consensus 130 ~~gG~~~~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~-g--~~~~ad~VV~A~p~ 192 (418)
..|.-+..+.+.|.+.+++ .+.+|+-++.+.+|..+++ ..+.||.+ . + .++.++.||+|+..
T Consensus 127 ~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 127 AADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-IGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred ecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-ceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 3455566799999999876 5789999999999998873 24557776 2 2 46889999999986
No 312
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=59.20 E-value=12 Score=37.93 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHhhhhcCCCCceeeeeeEEEcCCCc-cccCCCCCCCCCCCCC-CCCCEEEeccccccCCCccchHHHHHHHHHHH
Q 014827 291 KAVSYLSKCIKDFSTATVMDHKIRRFPKSL-THFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 368 (418)
Q Consensus 291 ~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~-~~~~pg~~~~r~~~~~-~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA 368 (418)
.+..++-+..|++..+ .+.|.-+++ |.|... ....|.+++ -++||||||.- .|+ .+-|-|...|..|.
T Consensus 316 dVQ~~~irsipGlEna-----~i~rpgYAIEYD~v~p-~qL~~tLEtK~I~GLf~AGQI--NGT--tGYEEAAaQGliAG 385 (621)
T COG0445 316 DVQEQIIRSIPGLENA-----EILRPGYAIEYDYVDP-RQLKPTLETKKIKGLFFAGQI--NGT--TGYEEAAAQGLIAG 385 (621)
T ss_pred HHHHHHHHhCcccccc-----eeeccceeeeecccCh-hhcccchhhceecceEEcccc--cCC--chhHHHHhhhHHHH
Confidence 4566667777887643 344555554 223211 123355543 57999999998 555 34566666555553
No 313
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=58.83 E-value=12 Score=41.27 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
.|..+|||.+||.+. + + ..+--|+..|+.||..|...++-
T Consensus 589 ~Ts~pgVFAaGD~~~-G-~-~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 589 RTSIKGVYSGGDAAR-G-G-STAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred ccCCCCEEEEEcCCC-C-h-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899999999952 2 2 47888999999999999998873
No 314
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=58.30 E-value=14 Score=38.29 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=32.5
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+..+|+|.+||.+ .+. .++..|+..|+.||..|...+.
T Consensus 406 ~ts~~~Vfa~GD~~-~g~--~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 406 MTGRPGVFAGGDMV-PGP--RTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred cCCCCCEEeccCcC-CCc--hHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999995 222 5788899999999999988885
No 315
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=58.13 E-value=27 Score=38.94 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC------------------C--eEEecCEEEEccChh
Q 014827 144 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------------K--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 144 ~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~------------------g--~~~~ad~VV~A~p~~ 193 (418)
+.+.+.|++|++++.+.+|..+++ |+|++|.+. | .++.+|.||+|+...
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 345678999999999999976544 777666431 1 258999999999864
No 316
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=57.69 E-value=25 Score=35.14 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|.+||.+ +.. .....|+..|+.||+.|+.
T Consensus 289 ~~Ts~~~IyA~GD~~--~~~-~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVT--DRI-NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccC--CCc-cchhHHHHHHHHHHHHHhc
Confidence 356789999999995 322 3567899999999999975
No 317
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=57.47 E-value=20 Score=37.02 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=39.6
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEE--C-C---e-EEecCEEEEccChhhHHHhhc
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K---E-TYSAGAVVLAVGISTLQELIK 200 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~-g---~-~~~ad~VV~A~p~~~~~~Ll~ 200 (418)
++.+.+|.+++.|++|..++ +++++|.+ + + + .+.++.||+++..-...+|+-
T Consensus 214 ~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~ 272 (542)
T COG2303 214 KRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLL 272 (542)
T ss_pred cCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHH
Confidence 34458999999999999998 66777766 2 2 2 256789999999877777653
No 318
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.11 E-value=17 Score=40.33 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
++..+|||.+||.. .+ + .++..|+..|+.||..|++..+.
T Consensus 802 ~Ts~pgVFAaGD~a-~G-P-~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 802 ETNITNVFVIGDAN-RG-P-ATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred ccCCCCEEEEeCcC-CC-c-cHHHHHHHHHHHHHHHHhccccC
Confidence 46789999999984 23 3 47889999999999999876543
No 319
>PLN02852 ferredoxin-NADP+ reductase
Probab=56.76 E-value=13 Score=37.61 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCCC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 378 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~~ 378 (418)
.|+++|+|.|||-.. +. .+.+-.++..|..+|+.|++++..+
T Consensus 383 ~T~ipGvyAaGDi~~-Gp-~gvI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 383 ADTEPGLYVVGWLKR-GP-TGIIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred ccCCCCEEEeeeEec-CC-CCeeeecHhhHHHHHHHHHHHHHcC
Confidence 367899999999963 32 2467778889999999999998653
No 320
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=56.72 E-value=17 Score=39.23 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEEC-CeEEecCEEEEccChh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 193 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~A~p~~ 193 (418)
+++...+.+.+.|++|++|+.|. .. |+++ .....+|+||+|+.++
T Consensus 483 ~~~~~~~~l~~~gv~~~~~~~v~--------~~---v~~~~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 483 IVDVEIENLKKLGVKFETDVIVG--------KT---ITIEELEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHCCCEEECCCEEC--------Cc---CCHHHHhhcCCCEEEEeCCCC
Confidence 44555566777788888887552 11 1222 1245689999999985
No 321
>PRK13984 putative oxidoreductase; Provisional
Probab=56.65 E-value=17 Score=38.04 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 194 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~ 194 (418)
+++...+.+++.|+++++|+.|..- .. .+.....+|+||+|+....
T Consensus 335 ~~~~~~~~~~~~gv~~~~~~~v~~~-~~----------~~~~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 335 ALDKDIAFIEALGVKIHLNTRVGKD-IP----------LEELREKHDAVFLSTGFTL 380 (604)
T ss_pred HHHHHHHHHHHCCcEEECCCEeCCc-CC----------HHHHHhcCCEEEEEcCcCC
Confidence 3344445566677777777766321 00 0011246999999999753
No 322
>PLN02785 Protein HOTHEAD
Probab=55.90 E-value=27 Score=36.45 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCC--CeEEEEEE---CCeEE-------ecCEEEEccChhhHHHhhc
Q 014827 140 EPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKETY-------SAGAVVLAVGISTLQELIK 200 (418)
Q Consensus 140 ~~l~~~l~~~G~~I~l~t~V~~I~~~~~~--g~v~~v~~---~g~~~-------~ad~VV~A~p~~~~~~Ll~ 200 (418)
..+.......+.+|.+++.|++|..++++ +++++|+. +|++. ..+.||+++.+-...+||-
T Consensus 224 a~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~ 296 (587)
T PLN02785 224 AELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296 (587)
T ss_pred HHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHH
Confidence 33433444557899999999999987521 27888886 35432 2368999999877766654
No 323
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=55.34 E-value=17 Score=38.35 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=32.1
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.|..+|||.+||-+ .+ + ..+..|+..|+.||..|...+.
T Consensus 463 ~Ts~pgVfA~GDv~-~g-~-~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 463 QTSVAGVFAGGDCV-TG-A-DIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred cCCCCCEEEcCCcC-CC-c-hHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999995 22 2 4667899999999999999885
No 324
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=54.42 E-value=9.7 Score=35.93 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=74.6
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhcCCC--cceeeecCCcchhhHHHHHHH
Q 014827 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN--FDLVWCRGTLREKIFEPWMDS 145 (418)
Q Consensus 68 d~~s~~e~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~--~~~~~~~gG~~~~l~~~l~~~ 145 (418)
+-.++++-.-+. .++.+++.|+.+...-.++.+|+++.+..+.++=..+...+..- ---++|++|+ ..+++.|++
T Consensus 130 ~~q~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GY-T~~~~kMl~- 206 (374)
T COG0562 130 EPQNLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGY-TAMFEKMLD- 206 (374)
T ss_pred chhhhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccH-HHHHHHHhc-
Confidence 334555555553 67788999999999999999999999976654321111111110 1126799996 556666653
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChhhHHHh
Q 014827 146 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 198 (418)
Q Consensus 146 l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~~~~~L 198 (418)
....+|++||.-..|..... + +.+..||.+.|.+..-..
T Consensus 207 --hp~I~V~Lntd~~~~~~~~~-~-----------~~~~~VvytG~iD~~Fdy 245 (374)
T COG0562 207 --HPNIDVRLNTDFFDVKDQLR-A-----------IPFAPVVYTGPIDAYFDY 245 (374)
T ss_pred --CCCceEEecCcHHHHhhhhc-c-----------cCCCceEEecchHhhhcc
Confidence 44679999998877764331 1 345699999998876543
No 325
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=54.18 E-value=17 Score=37.78 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+.+.++ +| ..++-.|+.+|++|++.+.+...
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999984211 22 02577899999999999877654
No 326
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=54.18 E-value=19 Score=39.76 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
++..+|||.+||.+ .+ + .++..|+..|+.||+.|+...+.
T Consensus 804 qTs~pgVFAaGD~a-~G-p-~tvv~Ai~qGr~AA~nI~~~~~~ 843 (1019)
T PRK09853 804 ETSLTNVYMIGDVQ-RG-P-STIVAAIADARRAADAILSREGI 843 (1019)
T ss_pred ccCCCCEEEEeccc-cC-c-hHHHHHHHHHHHHHHHHhhhcCC
Confidence 46789999999995 23 3 47889999999999999988764
No 327
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=53.77 E-value=32 Score=34.17 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCCCCEEEecccccc-CCCc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT-RHGS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~-~~g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
+..+|+|.+||.... ..+. .....|+..|..+|+.|...+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 568999999999631 1111 3556799999999999998874
No 328
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=53.51 E-value=41 Score=34.86 Aligned_cols=47 Identities=28% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEE-----------------CC--eEEecCEEEEccChhh
Q 014827 146 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 146 l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-----------------~g--~~~~ad~VV~A~p~~~ 194 (418)
+.+.|++|++++.+.+|..+++ +.+ ++++ .| .++.+|.||+|++...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 4567999999999999976553 433 3321 12 3689999999998643
No 329
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=53.11 E-value=15 Score=38.01 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++..+|+|.+||-+ ..+...+..|+..|..||..|...+.
T Consensus 270 ~Ts~p~IyAaGDv~--~~~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 270 ETNVPGVYAAGDLR--PKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred ccCCCCEEEceecc--CCCcchheeHHhhHHHHHHHHHHHHH
Confidence 46689999999984 22223456799999999999987664
No 330
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=52.82 E-value=43 Score=32.81 Aligned_cols=62 Identities=10% Similarity=-0.028 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEccChhh-HHHhhc
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 200 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~A~p~~~-~~~Ll~ 200 (418)
.+.+.|.+.+.+.|+++++++.+.++...++ ..+ .|++ +|+ +++||.||-|=..+. +.+.++
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-Ccc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 4667777777778999999999888754221 222 3444 564 689999998888866 455554
No 331
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=52.54 E-value=64 Score=29.93 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCCCCEEEeccccccCCCc--cchHHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~--~~~egAi~SG~~aA~~Il~~ 374 (418)
...+|+.+.||.....+|. ++|.-|+......++.+...
T Consensus 127 ~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 127 NWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred CCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 3458999999998655555 67777777777776665544
No 332
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.21 E-value=23 Score=39.50 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=32.3
Q ss_pred CCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 336 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
+.++|||.|||. ++. .++..|+.+|..||..|...++.
T Consensus 436 t~v~gVyaaGD~--~g~--~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAA--NGL--FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeecc--CCc--cCHHHHHHHHHHHHHHHHHHcCC
Confidence 457999999998 444 46788999999999999999985
No 333
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.18 E-value=21 Score=37.32 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+-..++ +| ..++-.|+..|++|++.+.+.+.
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 5799999999974211 22 12677899999999999877654
No 334
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=50.13 E-value=23 Score=36.64 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCCCCEEEecccccc----CCC--ccchHHHHHHHHHHHHHHHHHhCC
Q 014827 336 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g--~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
.+++|||-||+-+.. .+. ..++-.|+.+|+.|++.+.+....
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~ 552 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSA 552 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCC
Confidence 589999999986321 111 136788999999999999877654
No 335
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.08 E-value=25 Score=36.51 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=30.9
Q ss_pred CCC-CCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTS-FPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~-~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
+++ ++|||-||+...++ +| ..++-.|+..|++|++.+.+.+.
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 465 99999999984221 22 12678899999999999877654
No 336
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=49.42 E-value=30 Score=32.90 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=33.3
Q ss_pred HHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCCCCC-CCCCCCEEEeccccccCCCccchHHHHHHHHHHHH
Q 014827 294 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 369 (418)
Q Consensus 294 ~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r~~~-~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~ 369 (418)
.++-++.|++..++.+-.-++ .+.++...|.-.. +.. ...-+||||||.-+ |.- |.+|+| .||..|..
T Consensus 293 krVf~mIPgLeNAefvRyGvm--HRNtfinSP~lL~--~tl~lk~~p~l~fAGQit--G~E-GYveSa-A~Gllag~ 361 (439)
T COG1206 293 KRVFRMIPGLENAEFVRYGVM--HRNTFINSPKLLD--PTLQLKKRPNLFFAGQIT--GVE-GYVESA-ASGLLAGI 361 (439)
T ss_pred hhhhhhcCCcchhhhhhccce--ecccccCChhhhh--HHhhcccCCCcEEeeeee--cch-hhhHHh-hhhHHHhh
Confidence 345567788875544432222 1222222222111 111 13458999999993 332 566655 34444443
No 337
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=49.15 E-value=45 Score=33.57 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|.+||.+ +.. .....|...|..||+.++.
T Consensus 300 ~~Ts~~~IyA~GD~~--~~~-~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCT--GVL-PLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeecc--CCc-cchhHHHHHHHHHHHHHcC
Confidence 357789999999995 322 3567799999999999875
No 338
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=49.15 E-value=26 Score=35.09 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|||.+||.+ +.. ....-|+..|+.||+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~--~~~-~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVV--GKV-ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecC--CCc-ccHHHHHHHHHHHHHHHhc
Confidence 346789999999994 333 4678899999999999974
No 339
>PRK06116 glutathione reductase; Validated
Probab=49.03 E-value=26 Score=35.06 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
++..+|+|.+||.+ +.. .....|+..|+.||+.|+.
T Consensus 292 ~Ts~~~IyA~GD~~--~~~-~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 292 NTNVPGIYAVGDVT--GRV-ELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CcCCCCEEEEeecC--CCc-CcHHHHHHHHHHHHHHHhC
Confidence 46789999999984 222 3567899999999999975
No 340
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=47.02 E-value=26 Score=36.90 Aligned_cols=41 Identities=32% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCCCEEEecccccc-CCC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~-~~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+...+ .+| ..++-.|+..|++|++.+.+...
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 579999999997421 122 12678899999999999877654
No 341
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.70 E-value=26 Score=36.47 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=29.8
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
++++|||-||+-..++ +| ..++-.|+..|++|++.+.+..
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 6799999999974211 22 1257789999999999987664
No 342
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=46.00 E-value=21 Score=35.29 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCCCEEEecccccc---CCCccchHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITT---RHGSWSQERSYVTGLEAAN 369 (418)
Q Consensus 336 ~~~~~l~laGd~~~~---~~g~~~~egAi~SG~~aA~ 369 (418)
..++||||||+-+.. ..|+ .+.-|..||+.|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGY-NLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGY-NLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTH-HHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCch-hHhHHHHHHHHhhC
Confidence 458999999998642 2233 58999999999986
No 343
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=45.37 E-value=29 Score=36.18 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+++++|||-||+-..++ +| ..++-.|+..|++|++.+.+...
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 358899999999973211 11 13577899999999999887654
No 344
>PRK06175 L-aspartate oxidase; Provisional
Probab=45.09 E-value=64 Score=32.17 Aligned_cols=43 Identities=28% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.++++||||-||+-..++ +| ..++-.|+..|++|++.+.....
T Consensus 340 ~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 340 SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 347999999999974211 21 14577889999999999876553
No 345
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=44.56 E-value=31 Score=35.00 Aligned_cols=43 Identities=33% Similarity=0.393 Sum_probs=31.3
Q ss_pred CCCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 333 RGFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 333 ~~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
..+++++|||-||+...++ +| ..++-.|+..|++|++.+.+..
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999984211 21 1357789999999999987653
No 346
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.95 E-value=30 Score=35.70 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCCCCCCEEEeccccccCCC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.++++||||-||+-+..-+| ..++-.|+.+|+.|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34899999999997421111 1346679999999999987765
No 347
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=43.27 E-value=25 Score=33.25 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+|.+||+|-|||-. .....-+..|+-.|..||..+.+.+.
T Consensus 261 ~~TsvpGifAaGDv~--~~~~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 261 METSVPGIFAAGDVA--DKNGRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cccCCCCEEEeEeec--cCcccEEeehhhhHHHHHHHHHHHhh
Confidence 568899999999995 33323466788889999998887765
No 348
>PRK12839 hypothetical protein; Provisional
Probab=42.79 E-value=27 Score=36.29 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCCCCEEEecccccc----CCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+.+.. .++. .++-.|+.+|+.|++.+.+..+
T Consensus 523 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 523 TPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 589999999985321 1211 4678899999999999977654
No 349
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=42.53 E-value=76 Score=35.21 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=33.3
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEE------------------CC--eEEecCEEEEccChh
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 193 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~------------------~g--~~~~ad~VV~A~p~~ 193 (418)
.+.|++++.++.+.+|..++++++|+++.+ .| .++.||.||+|+...
T Consensus 495 ~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 495 LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 457999999999999976532145655432 12 258999999999864
No 350
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=42.47 E-value=30 Score=36.37 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
++++|||-||+...++ +| ..++-.|+..|++|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 5799999999974211 22 1267889999999999987764
No 351
>PRK07121 hypothetical protein; Validated
Probab=42.30 E-value=29 Score=35.25 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=28.7
Q ss_pred CCCCCEEEeccccccCC-----CccchHHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITTRH-----GSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~-----g~~~~egAi~SG~~aA~~Il~~ 374 (418)
++++|||-||+-...-+ +..++-.|+.+|+.|++.+.+.
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 58999999998632101 1146788999999999988764
No 352
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=42.01 E-value=27 Score=36.37 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCCCEEEecccccc----CCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+.+.. .++. .++-.|+.+|+.|++.+.+...
T Consensus 526 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 526 QPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 589999999974211 1211 3677899999999999977654
No 353
>PRK08275 putative oxidoreductase; Provisional
Probab=41.97 E-value=33 Score=35.45 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 333 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 333 ~~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
..+|.++|||-||+.. ..+..++..|+..|+.|++.+.+.+.
T Consensus 364 ~~~t~i~gl~a~Ge~~--~~~~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 364 KAETTVPGLYAAGDMA--SVPHNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CCccCCCCEEECcccC--CchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458899999999973 22224677899999999998876653
No 354
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=41.92 E-value=38 Score=35.11 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+-..++ +| ..++-.|+.+|++|++.+.+...
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999974211 21 13577899999999999877653
No 355
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.34 E-value=34 Score=34.26 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
++..+|+|.+||.+ +.+ .....|+..|..||+.|+.
T Consensus 299 ~t~~~~IyAiGD~~--~~~-~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 299 QTAVPHIYAVGDVI--GFP-SLASASMDQGRIAAQHAVG 334 (461)
T ss_pred ccCCCCEEEeeecC--CCc-ccHhHHHHHHHHHHHHHcC
Confidence 46789999999984 333 3567799999999999974
No 356
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.98 E-value=36 Score=35.53 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+-..++ +| ..++-.|+..|+.|++.+.+...
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 424 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999974211 22 12467899999999998876653
No 357
>PRK14727 putative mercuric reductase; Provisional
Probab=40.51 E-value=34 Score=34.60 Aligned_cols=38 Identities=21% Similarity=0.090 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|||-+||-+ +.+ ..+.-|+..|+.||+.|+..
T Consensus 309 ~~Ts~~~IyA~GD~~--~~~-~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 309 METSAPDIYAAGDCS--DLP-QFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred eecCCCCEEEeeecC--Ccc-hhhhHHHHHHHHHHHHHcCC
Confidence 357789999999994 333 35677999999999999753
No 358
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=40.45 E-value=35 Score=35.46 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCCCCEEEecccccc----CC---CccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT----RH---GSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~---g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+.+.. .+ | .++-.|+.+|+.|++.+.+..+
T Consensus 522 ~pIpGLYAaG~~~gg~~g~~y~~~G-~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 522 TPIAGLYAVGNDRASIMGGNYPGAG-ITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCcCCceecccccccCccCCCCCCc-ccHHHHHHHHHHHHHHHHhhhc
Confidence 589999999976321 11 2 3578899999999999987654
No 359
>PRK09077 L-aspartate oxidase; Provisional
Probab=40.05 E-value=44 Score=34.39 Aligned_cols=42 Identities=33% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+++++|||-||+...++ +| ..++-.|+..|++|++.+....
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 357899999999974211 21 1357789999999999987764
No 360
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.04 E-value=33 Score=36.10 Aligned_cols=42 Identities=31% Similarity=0.401 Sum_probs=30.7
Q ss_pred CCCCCCEEEeccccccCC-----CccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FTSFPNLFMAGDWITTRH-----GSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~-----g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.++++|||-||+-...-+ +..++-.|+..|++|++.+.+...
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999642111 213678899999999998876643
No 361
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=39.44 E-value=45 Score=33.89 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|-+||.+ +.+ ..+.-|+..|..||+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~--~~~-~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVT--DRV-MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecC--CCc-ccHHHHHHHHHHHHHHHhC
Confidence 357789999999994 333 3567799999999999975
No 362
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=38.92 E-value=32 Score=34.52 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCCCEEEecccccc---C--C-CccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT---R--H-GSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~---~--~-g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+.... + + +..++-.|+.+|+.|++.+.+...
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 589999999986311 0 1 114577789999999999977643
No 363
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=38.70 E-value=76 Score=30.34 Aligned_cols=53 Identities=28% Similarity=0.435 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHh---cC-cEEEcCceeeEEEecCCCCeEEEEEEC------------------C-eEEecCEEEEccC
Q 014827 137 KIFEPWMDSMRT---RG-CEFLDGRRVTDFIYDEERCCISDVVCG------------------K-ETYSAGAVVLAVG 191 (418)
Q Consensus 137 ~l~~~l~~~l~~---~G-~~I~l~t~V~~I~~~~~~g~v~~v~~~------------------g-~~~~ad~VV~A~p 191 (418)
.+.+++++.+++ .| +++++.++|.++...+ |+|++|+-+ | -++.|.+||++..
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 477888888765 33 6889999999999988 788887521 1 2578889999876
No 364
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=38.03 E-value=39 Score=35.24 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCCCEEEecccccc----CCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+.... .++. .++-.|+.+|+.|++.+.+...
T Consensus 525 ~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~ 571 (584)
T PRK12835 525 SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVA 571 (584)
T ss_pred CCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhh
Confidence 689999999977421 1111 2477899999999999987754
No 365
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=37.92 E-value=61 Score=31.55 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEECCeEEecCEEEEccChh
Q 014827 138 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 193 (418)
Q Consensus 138 l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~A~p~~ 193 (418)
+-+.+.+.+ +..|++++.|++| ++ +.|+ + .+|++++||.||-|.+..
T Consensus 91 f~~~l~~~l---~~~i~~~~~V~~v--~~--~~v~-l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 91 FHEGLLQAF---PEGVILGRKAVGL--DA--DGVD-L-APGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHhh---cccEEecCEEEEE--eC--CEEE-E-CCCCEEEeeEEEECCCCC
Confidence 445554444 3338889999988 33 3343 3 578899999999999976
No 366
>PRK13748 putative mercuric reductase; Provisional
Probab=37.55 E-value=40 Score=34.79 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|.+||.+ +.+ ..+..|+..|+.||..|..
T Consensus 391 ~~Ts~~~IyA~GD~~--~~~-~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 391 MRTSVPHIYAAGDCT--DQP-QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cccCCCCEEEeeecC--CCc-cchhHHHHHHHHHHHHHcC
Confidence 357789999999994 333 3667799999999999974
No 367
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=37.55 E-value=82 Score=31.95 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=28.5
Q ss_pred cCcE-EEcCceeeEEEecCCCCeEEEEEE---------CC-----------eEEecCEEEEccCh
Q 014827 149 RGCE-FLDGRRVTDFIYDEERCCISDVVC---------GK-----------ETYSAGAVVLAVGI 192 (418)
Q Consensus 149 ~G~~-I~l~t~V~~I~~~~~~g~v~~v~~---------~g-----------~~~~ad~VV~A~p~ 192 (418)
.|++ +++++.+.+|..+++ |+|++|.+ +| .++.+|.||+|+..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 4543 456888888865433 56666542 12 26899999999875
No 368
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.54 E-value=44 Score=34.69 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=29.9
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
+++||||-||+-..++ +| ..++-.|+..|++|++.+...+.
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999974211 22 13567899999999998876643
No 369
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=37.30 E-value=40 Score=33.75 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=29.4
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|.+||.+ +.. .....|+..|+.||+.|..
T Consensus 294 ~~ts~~~IyA~GD~~--~~~-~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVN--GKP-PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecC--CCc-cchhHHHHHHHHHHHHhcC
Confidence 346789999999995 333 3557799999999999976
No 370
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=37.27 E-value=45 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
+|.++|+|-+||. ++.+. ...-|...|+.||+.|+.
T Consensus 299 ~Tnvp~IyA~GDV--~~~~~-Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDV--IGGPM-LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeecc--CCCcc-cHhHHHHHHHHHHHHHhC
Confidence 3568999999999 44553 678899999999999997
No 371
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=37.15 E-value=53 Score=34.21 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 333 RGFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 333 ~~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
..+|++||||-||+...++ +| ..++-.|+..|++|++.+.....
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999874222 21 13677899999999999887653
No 372
>PLN02507 glutathione reductase
Probab=37.07 E-value=48 Score=33.79 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|||-+||.+ +.. .....|...|+.||+.|+.
T Consensus 326 ~~Ts~p~IyAiGDv~--~~~-~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 326 SRTNIPSIWAIGDVT--NRI-NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CcCCCCCEEEeeEcC--CCC-ccHHHHHHHHHHHHHHHcC
Confidence 457889999999995 332 3567899999999999875
No 373
>PRK14694 putative mercuric reductase; Provisional
Probab=36.97 E-value=44 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|.+||.+ +.+ ..+.-|+..|+.||..|+.
T Consensus 298 ~~Ts~~~IyA~GD~~--~~~-~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCT--DQP-QFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecC--CCc-ccHHHHHHHHHHHHHHhcC
Confidence 356789999999994 333 3677899999999999874
No 374
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.80 E-value=53 Score=34.30 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=30.5
Q ss_pred CCCCCCCEEEeccccccCCC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
..++++|||-||+.....+| ..++-.|+..|+.|++.+.+..
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45789999999997421112 1356789999999999887664
No 375
>PRK08071 L-aspartate oxidase; Provisional
Probab=36.74 E-value=44 Score=34.13 Aligned_cols=42 Identities=36% Similarity=0.435 Sum_probs=30.2
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+++++|||-||+-..++ +| ..++-.|+..|++|++.+....
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 347899999999974211 21 1257788999999999986543
No 376
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.61 E-value=85 Score=31.48 Aligned_cols=56 Identities=16% Similarity=-0.008 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEccChhh
Q 014827 137 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST 194 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~--~I~l~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~A~p~~~ 194 (418)
.+.+.|...+++.+. .|++++.|.++...++ |+ |.|.+. + +...+|.||+|+..+.
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GK-WRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEeeccC-Cc-eeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 366777777766653 6999999999987653 43 667762 2 3678999999999884
No 377
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=36.56 E-value=3e+02 Score=27.22 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=23.9
Q ss_pred CEEEeccccccCCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 340 NLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 340 ~l~laGd~~~~~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
|+.++||..|.-.|. -++..|++.+..-|+.+-+..+
T Consensus 289 ~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 289 NVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred eEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 899999998743332 4455566666666666555444
No 378
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.50 E-value=3.1e+02 Score=28.33 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=43.0
Q ss_pred eeecCCcchh-hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 128 VWCRGTLREK-IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 128 ~~~~gG~~~~-l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
.|..|-..++ +.-.++=-..++|..+.--.+|.++..+++ |+|.++.+ .|+ .+.|..||=|+.+-.
T Consensus 215 VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 215 VYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred EEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 4555544332 222333334567888887789999998876 67766665 255 468889999888743
No 379
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.42 E-value=45 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.++..+|+|.+||.+ +.+ .....|+..|+.||+.|...
T Consensus 300 ~~t~~p~VyAiGDv~--~~~-~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 300 CRTNVPHIFAIGDIV--GQP-MLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred cccCCCCEEEehhhc--CCc-ccHHHHHHHHHHHHHHHcCC
Confidence 357789999999984 333 35677999999999999753
No 380
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=36.36 E-value=50 Score=34.55 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=30.6
Q ss_pred CCCCCCCEEEeccccccCCC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+|.++|||-||+.....+| ..++-.|+..|++|++.+.+..
T Consensus 379 ~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 379 QMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999996321221 1356789999999999887654
No 381
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.82 E-value=44 Score=34.75 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=29.5
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+...++ +| ..++-.|+.+|++|++.+.+...
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3599999999974211 22 12467889999999999876653
No 382
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.56 E-value=50 Score=33.19 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.++..+|+|.+||.+ +.. .....|...|+.||+.|..
T Consensus 299 ~~Ts~p~IyAiGD~~--~~~-~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVT--AKL-QLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecC--CCc-ccHhHHHHHHHHHHHHHcC
Confidence 346789999999994 322 3567799999999999975
No 383
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.46 E-value=63 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE-CCeEEecCEEEEccChh
Q 014827 137 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 193 (418)
Q Consensus 137 ~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~A~p~~ 193 (418)
.|..+|.+++++..++|....++++++..+..+....|++ +|..+.++.||+++.+.
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 5999999999999999999999999987532132345666 57789999999999885
No 384
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=35.44 E-value=42 Score=33.39 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCCCCEEEeccccccCCCc------cchHHHHHHHHHHHHHHHHHh
Q 014827 336 TSFPNLFMAGDWITTRHGS------WSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~------~~~egAi~SG~~aA~~Il~~~ 375 (418)
+.++|||.+|+-+. ++.+ +++ |+.||..||++|++..
T Consensus 378 ~~~~nl~a~G~vl~-g~d~~~~~~g~Gv--a~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 378 PVIENLYAAGAVLG-GYDPIREGCGSGV--ALATALHAAEQIAEEA 420 (422)
T ss_pred eeccceEEeeehhc-CCchHHhCCCchh--HHHHHHHHHHHHHHhh
Confidence 45799999999873 2221 233 8999999999998764
No 385
>PLN02815 L-aspartate oxidase
Probab=35.44 E-value=53 Score=34.31 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+++++|||-||+-..++ +| ..++-.|+..|++|++.+.+..
T Consensus 386 ~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 386 GETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999974211 21 1357788999999999987653
No 386
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=35.26 E-value=47 Score=33.03 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCCCCEEEecccccc---CCC---ccchHHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITT---RHG---SWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 336 ~~~~~l~laGd~~~~---~~g---~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+++|||-||+.+.. +.. ..++-.|+.+|+.|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 589999999975311 111 135677899999999988654
No 387
>PRK06370 mercuric reductase; Validated
Probab=35.26 E-value=55 Score=32.84 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.++..+|+|-+||.+ +.. .....|...|+.||+.|+..
T Consensus 297 l~t~~~~IyAiGD~~--~~~-~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 297 LRTTNPGIYAAGDCN--GRG-AFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CcCCCCCEEEeeecC--CCc-ccHHHHHHHHHHHHHHHhCC
Confidence 357789999999995 333 35678999999999999753
No 388
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=35.20 E-value=30 Score=34.25 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCCEEEeccccc------cCCCccchHHHHHHHHHHHHHHH
Q 014827 337 SFPNLFMAGDWIT------TRHGSWSQERSYVTGLEAANRVV 372 (418)
Q Consensus 337 ~~~~l~laGd~~~------~~~g~~~~egAi~SG~~aA~~Il 372 (418)
.++|||.||.-+. .+.| +++ |+.||..||++|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG-~GV--ai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCG-SGV--AVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCC-chh--HHHHHHHHHHhhC
Confidence 4899999998763 1222 344 8999999999874
No 389
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=34.90 E-value=41 Score=34.91 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCCCCEEEecccccc----CCC--ccchHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g--~~~~egAi~SG~~aA~~Il~ 373 (418)
.+++|||-||+.+.. .++ ..++-.|+.+|++|++.+.+
T Consensus 520 ~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 520 SVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 589999999977421 111 13678899999999998753
No 390
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=34.74 E-value=1.1e+02 Score=30.90 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
++..+|+|.+||.+ +.+ .....|+..|..||+.|..
T Consensus 307 ~ts~~~IyAiGD~~--~~~-~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 307 QTKERHIYAIGDVI--GEP-QLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred ccCCCCEEEeeecC--CCc-ccHHHHHHHHHHHHHHHcC
Confidence 46679999999995 222 3567799999999998864
No 391
>PRK07512 L-aspartate oxidase; Provisional
Probab=34.39 E-value=53 Score=33.60 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=30.5
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+++++|||-||+...++ +| ..++-.|+..|++|++.+.+...
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347899999999974211 11 12466788999999999877643
No 392
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=34.15 E-value=42 Score=34.66 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCCCCEEEeccccc------cCC----CccchHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWIT------TRH----GSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 336 ~~~~~l~laGd~~~------~~~----g~~~~egAi~SG~~aA~~Il~ 373 (418)
+++||||-||+-.. .++ | .++-.|+.+|+.|++.+.+
T Consensus 502 ~pIpGLYAaG~~~g~~~~g~~g~~~~~G-~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 502 TPLPGLYAAGEAAGFGGGGVHGYNALEG-TFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CEeCCeeeceecccccCCCcCCcccccc-chHHHHHHHHHHHHHHHhh
Confidence 58999999998841 011 2 3577899999999998753
No 393
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.60 E-value=57 Score=33.91 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=30.2
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+-+.++ +| ..++-.|+.+|++|++.+.+...
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999974211 21 13578899999999999876653
No 394
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.37 E-value=56 Score=32.76 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.++..+|+|-+||.+ +.+ .....|+..|+.||+.|...
T Consensus 297 ~~t~~~~VyAiGD~~--~~~-~~~~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 297 LRTNVPNIYAIGDIV--GGP-MLAHKASAEGIIAAEAIAGN 334 (462)
T ss_pred CccCCCCEEEeeecC--CCc-chHHHHHHHHHHHHHHHcCC
Confidence 347789999999995 223 35678999999999999753
No 395
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=33.36 E-value=51 Score=34.30 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCCCEEEecccccc----CCCc--cchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g~--~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++++|||-||+-+.. .++. .++-.|+.+|+.|++.+.+...
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 589999999966421 1111 2466799999999999977654
No 396
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=33.17 E-value=4.6e+02 Score=25.42 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhhhhcCCCCceeeeeeEEEcCCCccccCCCCCCCC--CCCCCCCCCEEEeccccccCCCccchHHH
Q 014827 283 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM--MRGFTSFPNLFMAGDWITTRHGSWSQERS 360 (418)
Q Consensus 283 ~~~~el~~~~~~~L~~~~p~~~~~~~~~~~v~r~~~a~~~~~pg~~~~r--~~~~~~~~~l~laGd~~~~~~g~~~~egA 360 (418)
.+.+-..+.++-.|..-.|.+....+... |..- +. -...... .....-+.|||+|-.. .++|+ .-+
T Consensus 401 VD~d~F~qkiwP~L~nRVP~fetakVqsa----WaGy-yD--~NtfD~ngViG~HP~y~Nly~atGF--sghGv---qqs 468 (509)
T KOG2853|consen 401 VDHDYFYQKIWPHLANRVPAFETAKVQSA----WAGY-YD--HNTFDDNGVIGEHPLYTNLYMATGF--SGHGV---QQS 468 (509)
T ss_pred cChHHHHhhhhHHHHhcccccceeeeeeh----hccc-cc--ccccccCCcccCCcceeeeeeeecc--cccch---hcc
Confidence 34556677888888888888865444332 4221 11 1111111 1112235799998777 56653 445
Q ss_pred HHHHHHHHHHHHH
Q 014827 361 YVTGLEAANRVVD 373 (418)
Q Consensus 361 i~SG~~aA~~Il~ 373 (418)
..-|+..|+.|++
T Consensus 469 ~avgRAiaElIld 481 (509)
T KOG2853|consen 469 PAVGRAIAELILD 481 (509)
T ss_pred hHHHHHHHHHHhc
Confidence 5557777777765
No 397
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=32.75 E-value=68 Score=30.75 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=48.0
Q ss_pred ecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhhH
Q 014827 130 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 195 (418)
Q Consensus 130 ~~gG~~~~l~~~l~~~l~~~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~~ 195 (418)
+--|+.+.+++.++++++++|.++.-.+-+.+|+..++ |+. .|.. .++ +-.+|.|++|+.-...
T Consensus 232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKAL 301 (503)
T ss_pred ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC-CcE-EEEeecccccccccchhhhhhhhhccccc
Confidence 33567778899999999999999999988888887775 653 3333 122 4578999999987654
No 398
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=32.51 E-value=45 Score=34.54 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCCCCEEEecccccc--C--CC--ccchHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITT--R--HG--SWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 336 ~~~~~l~laGd~~~~--~--~g--~~~~egAi~SG~~aA~~Il~ 373 (418)
.+++|||-||+-+.. + +. ..++-.|+.+|+.|++.+.+
T Consensus 512 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 512 SVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 589999999988521 1 11 12467899999999998864
No 399
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=32.44 E-value=61 Score=32.72 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.++..+|+|.|||.+ +.+ ....-|...|..||+.|...
T Consensus 310 ~~Ts~~~VyA~GD~~--~~~-~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 310 CRTNVPNVYAIGDVV--RGP-MLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred CccCCCCEEEEEecc--CCc-chHHHHHHHHHHHHHHHcCC
Confidence 346789999999994 333 35677999999999999753
No 400
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=32.25 E-value=87 Score=31.58 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=32.1
Q ss_pred CCCCCCCEEEeccccccCCCc------cchHHHHHHHHHHHHHHHHHhCC
Q 014827 334 GFTSFPNLFMAGDWITTRHGS------WSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~------~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
-+|.++|||-+|+-..||.-. -++--|+..|.+||+.|..+...
T Consensus 350 GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~~~ 399 (518)
T COG0029 350 GRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAP 399 (518)
T ss_pred CcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccccc
Confidence 358899999999996543221 13445788999999999987643
No 401
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=32.02 E-value=61 Score=32.44 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
++..+++|.+||.+ +.+ .....|+..|+.||+.|...
T Consensus 296 ~t~~~~IyaiGD~~--~~~-~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 296 RTNVPGIYAIGDVI--GGP-MLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred ccCCCCEEEeeecC--CCc-ccHHHHHHHHHHHHHHHcCC
Confidence 46679999999995 233 35677999999999999754
No 402
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=31.89 E-value=33 Score=33.75 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCCCCEEEecccccc---CCCccchHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITT---RHGSWSQERSYVTGLEAA 368 (418)
Q Consensus 336 ~~~~~l~laGd~~~~---~~g~~~~egAi~SG~~aA 368 (418)
..++||||||+-+.. ..|+ .+.-|..||+.|+
T Consensus 365 k~~~gly~~GE~lDv~g~~GGy-Nlq~a~~sg~~ag 399 (400)
T TIGR00275 365 KLVPGLYFAGEVLDVDGDTGGY-NLQWAWSSGYLAG 399 (400)
T ss_pred cCCCCeEEEEEEEecCCCCCch-HHHHHHHHHHHhc
Confidence 357999999988642 1122 4788999999986
No 403
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=31.49 E-value=64 Score=32.38 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=29.6
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|+|-+||.+ +.. ....-|...|+.||+.|+..
T Consensus 292 ~~Ts~~~VyAiGD~~--~~~-~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 292 LRTSNPGIYAAGDVT--GGL-QLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ccCCCCCEEEeeecC--CCc-ccHhHHHHHHHHHHHHhcCC
Confidence 357789999999995 333 35577999999999999754
No 404
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=31.20 E-value=56 Score=32.90 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|||-|||.+ +.+ ....-|...|+.||+.|+..
T Consensus 301 ~~Ts~~~IyA~GD~~--~~~-~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 301 HRTSVPGVWVIGDVT--SGP-MLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred eecCCCCEEEeeecC--CCc-ccHHHHHHHHHHHHHHHcCC
Confidence 357889999999995 333 35677999999999999754
No 405
>PRK08401 L-aspartate oxidase; Provisional
Probab=30.98 E-value=74 Score=32.04 Aligned_cols=41 Identities=29% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCCCCEEEeccccccC-CCc-----cchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g~-----~~~egAi~SG~~aA~~Il~~ 374 (418)
.+++++|||-||+...++ +|- .++-.|+..|++|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 347899999999984211 221 23556889999999998664
No 406
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=30.74 E-value=84 Score=33.31 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=30.3
Q ss_pred CC-CCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHhC
Q 014827 335 FT-SFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 335 ~~-~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
++ +++|||-||+...++ +| ..++-.|+..|+.|++.+.+...
T Consensus 382 ~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 382 ESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred CCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45 599999999974211 22 12567899999999999877653
No 407
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=30.65 E-value=76 Score=32.18 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|.+||.+. ... ....-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~-~~~-~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILE-DKQ-ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecC-CCc-cchHHHHHHHHHHHHHHhc
Confidence 3467899999999852 122 2456799999999999975
No 408
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=30.42 E-value=55 Score=33.38 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCCCCEEEeccccccCC-----CccchHHHHHHHHHHHHHHHHHh
Q 014827 336 TSFPNLFMAGDWITTRH-----GSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~-----g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
++++|||-||+-+..-+ +..++-.|+.+|+.|++.+.+..
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 68999999999642111 11357789999999999887654
No 409
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.17 E-value=63 Score=33.76 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=29.6
Q ss_pred CCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 336 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
++++|||-||+-..++ +| ..++-.|+..|++|++.+.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999974211 21 1257889999999999987654
No 410
>PLN02546 glutathione reductase
Probab=30.08 E-value=73 Score=32.99 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|||-+||-+ +.. ....-|+..|..+|+.|+..
T Consensus 376 l~Ts~p~IYAaGDv~--~~~-~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 376 SRTSVPSIWAVGDVT--DRI-NLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred ceeCCCCEEEeeccC--CCc-ccHHHHHHHHHHHHHHHcCC
Confidence 357789999999995 222 35678999999999998753
No 411
>PRK06444 prephenate dehydrogenase; Provisional
Probab=29.88 E-value=1e+02 Score=27.07 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.3
Q ss_pred ecCEEEEccChhhHHHhhcc
Q 014827 182 SAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 182 ~ad~VV~A~p~~~~~~Ll~~ 201 (418)
.||.||+|+|...+.+++..
T Consensus 31 ~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 31 KADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CCCEEEEeCCHHHHHHHHHH
Confidence 48999999999998887764
No 412
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=29.86 E-value=1.2e+02 Score=30.70 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhCC
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
.+..+|+|+||-. +++- -+..++.+|..||-+...-++.
T Consensus 508 ~s~~~GIflAG~a--qgPk--dI~~siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 508 DSNRDGIFLAGAA--QGPK--DIADSIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred cccCCcEEEeecc--cCCc--cHHHHHHHhHHHHHHHHHHhhc
Confidence 3677899999998 5553 6888899999888887776664
No 413
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=29.05 E-value=72 Score=31.96 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=29.0
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|+|.+||.+ +.. ....-|...|+.+|+.|...
T Consensus 291 ~~Ts~~~IyA~GD~~--~~~-~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 291 GRTSARGVWALGDVS--SPY-QLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred cccCCCCEEEeeccc--Ccc-cChhHHHHHHHHHHHHhcCC
Confidence 347789999999995 332 24566889999999999754
No 414
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.81 E-value=63 Score=35.69 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+|.++|||-|||... .+..++-+|+..|..|++.+.+.+
T Consensus 370 ~~T~v~GLfAaGE~a~--~~~nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 370 ARTTVPGLYAAGDLAC--VPHNYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CcccCCCeEechhccC--cchhhhhhHHHhHHHHHHHHHHHH
Confidence 4578999999999742 222467789999999999987764
No 415
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=28.56 E-value=49 Score=33.81 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCCCCEEEecccccc----CCCc--cchHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 336 ~~~~~l~laGd~~~~----~~g~--~~~egAi~SG~~aA~~Il~ 373 (418)
.+++|||-||+-+.. .++. .++-.|+.+|+.|++.+..
T Consensus 467 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 467 RPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 589999999997421 1211 2478899999999998743
No 416
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=27.90 E-value=91 Score=32.33 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEccChhh
Q 014827 136 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 194 (418)
Q Consensus 136 ~~l~~~l~~~l~~-~G~~I~l~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~A~p~~~ 194 (418)
..+...|.+.+.+ .+.+|..+..|.++..+++ +.+.++.. +|+ .+.+++||+||....
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 3477788888776 5568899999999988764 43555543 244 467899999998776
No 417
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=1e+02 Score=30.99 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=28.6
Q ss_pred cEEEcCceeeEEEecCC-CC--eEEEEEE-CCeEEecCEEEEccChhhHH
Q 014827 151 CEFLDGRRVTDFIYDEE-RC--CISDVVC-GKETYSAGAVVLAVGISTLQ 196 (418)
Q Consensus 151 ~~I~l~t~V~~I~~~~~-~g--~v~~v~~-~g~~~~ad~VV~A~p~~~~~ 196 (418)
.+|+-+ .|..|...++ .| ++.+|.+ +|..+.|+.||++|..-.-.
T Consensus 140 L~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~~ 188 (679)
T KOG2311|consen 140 LEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRG 188 (679)
T ss_pred chhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccceee
Confidence 345544 4555554432 11 3667776 68889999999999865433
No 418
>PRK07846 mycothione reductase; Reviewed
Probab=26.58 E-value=89 Score=31.31 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=28.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|+|.+||.+ +.. .....|...|+.+|+.|+..
T Consensus 288 ~~Ts~p~IyA~GD~~--~~~-~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 288 QRTSAEGVFALGDVS--SPY-QLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred cccCCCCEEEEeecC--CCc-cChhHHHHHHHHHHHHHcCC
Confidence 347789999999995 332 24567889999999998753
No 419
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=25.37 E-value=1.2e+02 Score=29.90 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCCCCEEEeccccccCC--Cc-cchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRH--GS-WSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~--g~-~~~egAi~SG~~aA~~Il~~~~ 376 (418)
...+++|.+||...... +. .+.+.|.+.|.-+|+.|.+.+.
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 46799999999974332 12 5789999999999999998875
No 420
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=25.26 E-value=2.2e+02 Score=30.19 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=30.9
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEE--EEEE----------------CCe--EEecCEEEEccChh
Q 014827 147 RTRGCEFLDGRRVTDFIYDEERCCIS--DVVC----------------GKE--TYSAGAVVLAVGIS 193 (418)
Q Consensus 147 ~~~G~~I~l~t~V~~I~~~~~~g~v~--~v~~----------------~g~--~~~ad~VV~A~p~~ 193 (418)
.+.|++|++++.+.+|..++ +++. .+.. +|+ ++.+|.||+|++..
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 35699999999999987655 3331 1111 222 58999999999854
No 421
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=25.21 E-value=88 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.2
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
++..+|+|.+||.+ +.. ....-|+..|+.||..+..
T Consensus 294 ~ts~~~VyA~GD~~--~~~-~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 294 QTNVPHIYACGDVI--GGI-QLAHVAFHEGTTAALHASG 329 (458)
T ss_pred ecCCCCEEEEeecC--CCc-ccHHHHHHHHHHHHHHHcC
Confidence 46789999999995 322 3567799999999998864
No 422
>PRK07804 L-aspartate oxidase; Provisional
Probab=24.74 E-value=83 Score=32.44 Aligned_cols=42 Identities=36% Similarity=0.397 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+|+++|||-||+-..++ +| ..++..|+..|+.|++.+.+..
T Consensus 366 ~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 366 GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999974211 11 1346678889999999887654
No 423
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=24.21 E-value=79 Score=36.04 Aligned_cols=41 Identities=29% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCCEEEeccccccCC-----CccchHHHHHHHHHHHHHHHHHhC
Q 014827 336 TSFPNLFMAGDWITTRH-----GSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~-----g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+++|||-||+.+..-+ +..++-.|+..|+.|++.+.+.+.
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~ 903 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQ 903 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999632111 113566799999999999988765
No 424
>PTZ00052 thioredoxin reductase; Provisional
Probab=23.95 E-value=1.1e+02 Score=31.26 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
+|..+|+|-+||-+. +.+ ....-|+..|+.+|+.|+..
T Consensus 304 ~Ts~p~IyAiGDv~~-~~~-~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 304 CTNIPNIFAVGDVVE-GRP-ELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cCCCCCEEEEEEecC-CCc-ccHHHHHHHHHHHHHHHhCC
Confidence 467899999999842 223 35678999999999999753
No 425
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=23.15 E-value=2e+02 Score=32.15 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=32.3
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEE----------------EEEC-CeEEecCEEEEccChhhHHHhh
Q 014827 148 TRGCEFLDGRRVTDFIYDEERCCISD----------------VVCG-KETYSAGAVVLAVGISTLQELI 199 (418)
Q Consensus 148 ~~G~~I~l~t~V~~I~~~~~~g~v~~----------------v~~~-g~~~~ad~VV~A~p~~~~~~Ll 199 (418)
+.|++++.++.+.+|.. + |+++. +..+ +.++.+|.||+|++...-..++
T Consensus 719 eeGVe~~~~~~p~~I~~-d--G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntell 784 (1019)
T PRK09853 719 EDGVEFKELLNPESFDA-D--GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELL 784 (1019)
T ss_pred HcCCEEEeCCceEEEEc-C--CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHH
Confidence 46899999998888853 2 32221 1122 3478999999999876444444
No 426
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=23.07 E-value=20 Score=34.07 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCCCCEEEeccccccCCCccc-----------hHHHHHHHHHHHHHHHH
Q 014827 336 TSFPNLFMAGDWITTRHGSWS-----------QERSYVTGLEAANRVVD 373 (418)
Q Consensus 336 ~~~~~l~laGd~~~~~~g~~~-----------~egAi~SG~~aA~~Il~ 373 (418)
+|++|||-||+-. +.|.++ +-||+-||+.|.+.+..
T Consensus 504 qPvpgLyAaGEvA--GFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaaa~ 550 (552)
T COG3573 504 QPVPGLYAAGEVA--GFGGGGVHGYRALEGTFLGGCIFSGRAAGRAAAG 550 (552)
T ss_pred CCCcchhhcchhc--ccCCCcccchhhhccceecceeecchhhhhhhcc
Confidence 6899999999883 333223 34577788777766543
No 427
>PTZ00058 glutathione reductase; Provisional
Probab=22.94 E-value=1.3e+02 Score=31.19 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCCCCCCEEEeccccccCC-------------------------------CccchHHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRH-------------------------------GSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~-------------------------------g~~~~egAi~SG~~aA~~Il~~ 374 (418)
.+|..+|+|-+||-+.... +......|...|+.||+.|...
T Consensus 361 lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 361 QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 4578899999999953100 1234577999999999999754
No 428
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=22.74 E-value=2.3e+02 Score=29.41 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCCCCEEEeccccccCC------CccchHHHHHHHHHHHHHHHHHhCC
Q 014827 335 FTSFPNLFMAGDWITTRH------GSWSQERSYVTGLEAANRVVDYLGD 377 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~------g~~~~egAi~SG~~aA~~Il~~~~~ 377 (418)
.+.++|||.||+.....+ |..++.+++.+|+.|+....+.+..
T Consensus 366 ~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~ 414 (562)
T COG1053 366 ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKE 414 (562)
T ss_pred ccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999963221 1147889999999999998888874
No 429
>PRK07395 L-aspartate oxidase; Provisional
Probab=22.43 E-value=1e+02 Score=31.88 Aligned_cols=40 Identities=30% Similarity=0.323 Sum_probs=27.4
Q ss_pred CCCCCCCEEEeccccccC-CC-----ccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~-~g-----~~~~egAi~SG~~aA~~Il~ 373 (418)
.+++++|||-||+.+.++ +| ..++-.|+..|++|++.+..
T Consensus 356 ~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 356 NQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999974211 11 12355678889999988753
No 430
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=22.01 E-value=66 Score=23.94 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=15.7
Q ss_pred ecCEEEEccChhhHHHhhcc
Q 014827 182 SAGAVVLAVGISTLQELIKN 201 (418)
Q Consensus 182 ~ad~VV~A~p~~~~~~Ll~~ 201 (418)
.+|.||+++|++.+.+++..
T Consensus 61 ~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp HTSEEEE-S-GGGHHHHHHH
T ss_pred cCCEEEEEECHHHHHHHHHH
Confidence 58999999999999887765
No 431
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.41 E-value=1.3e+02 Score=29.98 Aligned_cols=37 Identities=14% Similarity=-0.068 Sum_probs=28.5
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHH
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~ 373 (418)
.+|..+|+|-+||.+ +.. ....-|...|+.+++.|+.
T Consensus 280 ~~Ts~~~IyA~GD~~--~~~-~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 280 LHTTADNIWAMGDVT--GGL-QFTYISLDDYRIVRDELLG 316 (441)
T ss_pred cccCCCCEEEeeecC--CCc-cchhHHHHHHHHHHHHHcC
Confidence 357789999999995 332 3556688889999999875
No 432
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.14 E-value=94 Score=29.83 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHH
Q 014827 335 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 374 (418)
Q Consensus 335 ~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~ 374 (418)
++.+|++|-+||-+. +.+. -..-|++||+..|+++.+.
T Consensus 328 ~t~vp~vyAvGDIl~-~kpE-LTPvAIqsGrlLa~Rlf~g 365 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILE-DKPE-LTPVAIQSGRLLARRLFAG 365 (503)
T ss_pred hcCCCceEEecceec-CCcc-cchhhhhhchHHHHHHhcC
Confidence 378999999999983 4443 5677999999999998753
No 433
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=20.52 E-value=1.5e+02 Score=31.02 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHhC
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~~ 376 (418)
.+|.++|||-|||...++.. ....+++..|+.|++.+...+.
T Consensus 391 ~~T~v~glyA~Ge~~~~~~~-~l~~~s~~~g~~ag~~~~~~~~ 432 (608)
T PRK06854 391 RMTTVEGLFAAGDVVGGSPH-KFSSGSFAEGRIAAKAAVRYIL 432 (608)
T ss_pred cccCCCCEEEeeecCCCCcc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998422211 3455677788888888776553
No 434
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=20.44 E-value=61 Score=22.07 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=13.8
Q ss_pred HHHHHhhhhcCCCCCCCC
Q 014827 400 NRRFNEIRAQLPLSDYFL 417 (418)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~ 417 (418)
.+-|.+..+++||.|.=|
T Consensus 4 ~~~F~~a~~~SPWk~~pl 21 (57)
T PF08437_consen 4 AQYFRKAYKNSPWKDIPL 21 (57)
T ss_pred hHHHHHHHHcCCCCCCCC
Confidence 345888899999998643
No 435
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=20.18 E-value=1.3e+02 Score=31.63 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCCCCCEEEeccccccCCCccchHHHHHHHHHHHHHHHHHh
Q 014827 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 375 (418)
Q Consensus 334 ~~~~~~~l~laGd~~~~~~g~~~~egAi~SG~~aA~~Il~~~ 375 (418)
.+|.++|||-||+...++.. +..-+++..|..|+..+.+.+
T Consensus 402 ~~T~i~gLyA~Ge~~~~~~h-~l~~nsl~eg~~ag~~a~~~~ 442 (614)
T TIGR02061 402 RMTTVEGLFTCGDGVGASPH-KFSSGSFTEGRIAAKAAVRWI 442 (614)
T ss_pred CccccCCEEeceecccCcch-hhHHhHHHHHHHHHHHHHHHH
Confidence 35789999999997422211 122345555666665555443
Done!