BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014829
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED + +++Q G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
EE+ II + H LGNRW+ IA +PGRTDN +KN+WNS + RK+
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED + K +Q G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
EE+ II + H LGNRW+ IA +PGRTDN IKN+WNS + RK+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED + K +Q G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
EE+ II + H LGNRW+ IA +PGRTDN IKN+WNS + RK+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED + K +Q G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
EE+ II + H LGNRW+ IA +PGRTDN IKN+WNS + RK+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED + + ++ G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118
EE+ II + H LGNRW+ IA +PGRTDN +KN+WNS + RK+ T
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLRADLKRGNIT 71
KG +T EDD++ +Y++ NG +W P+ L R K CR RW N+L + + T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118
EE+E I + + LG++WS+IA +PGRTDN IKN WNS +S++I T
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITA 72
KK ++T EED++L + + +G W+ + R + CR RW NYL + TA
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 EEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 108
EE+ ++++ G +W++IA PGRTD IKN W
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 66 KRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSS 124
K+ T EE+E++ + A G+ W +IA+ P R + ++ W ++L+ I HT W
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 125 EKTLPVKV 132
+ L K+
Sbjct: 70 DALLVQKI 77
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 65 LKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
+K+ + T EE+ II + H LGNRW+ IA +PGRTDN IKN+WNS + RK+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 64 DLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
++K+ + T EE+ I+ + H LGNRW+ IA +PGRTDN IKN+WNS + RK+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAE 73
K ++T EED L + + G W + + + R + CR RW NY+ L+ + E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 108
E+ ++ + +A G +W+ I+ + R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
L KG WT EED L K +Q G W + K+ R GK CR RW N+L
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHL 49
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113
L +G T EE++ +IKL G RWS+IA ++ GR + + W++HL+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
L KG WT EED + K +Q G W + K+ R GK CR RW N+L
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHL 49
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113
L +G T EE++ +IKL G RWS+IA ++ GR + + W++HL+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
L KG WT EED + + +Q G W + K+ R GK CR RW N+L
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHL 49
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113
L +G T EE++ +I+L G RWS+IA ++ GR + + W++HL+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
L K RWT EED+ L K ++ NG W+ + N R C+ RW L
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113
L + T EE+E + KL G + W +IA+ +P RTD + ++ W L+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
L K RWT EED+ L K ++ NG W+ + N R C+ RW L
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113
L + T EE+E + KL G + W +IA+ +P RTD + ++ W L+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL-RCGKSCRLRW 57
KK +WT EE + + +Q GEG+W ++ KN + R + RW
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL-RCGKSCRLRW 57
KK +WT EE + + +Q GEG+W ++ KN + R + RW
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL-RCGKSCRLRW 57
KK +WT EE + + +Q GEG+W ++ KN + R + RW
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 32.0 bits (71), Expect = 0.65, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKN 43
KK +WT EE + + +Q GEG+W ++ KN
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKN 43
KK +WT EE + + +Q GEG+W ++ KN
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 31
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
K +WT EED+ L ++ G+ W+ L + R + C+ RW+ L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 71 TAEEEEIIIKLHASLGNR-WSLIASNMPGRTDNEIKNYWNSHLS 113
T EE+E + L G + W +AS+ P RTD + + W LS
Sbjct: 12 THEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 71 TAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116
T EE+E+ + A G RW+ I+ + RT ++K+Y + K+
Sbjct: 13 TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 58
>pdb|3TEB|A Chain A, EndonucleaseEXONUCLEASEPHOSPHATASE FAMILY PROTEIN FROM
LEPTOTRICHIA Buccalis C-1013-B
pdb|3TEB|B Chain B, EndonucleaseEXONUCLEASEPHOSPHATASE FAMILY PROTEIN FROM
LEPTOTRICHIA Buccalis C-1013-B
Length = 266
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 262 EETRINNKSMLCRTGEEKETEIL--EPFEGIDDAKLCFNDLLDPNEVWTLME 311
EE + +L RT EK+ +++ + + + K+ F+D+ + N W L+E
Sbjct: 16 EENQXEKIDILARTIAEKQYDVIAXQEVNQLXNNKIIFDDIREENYAWVLLE 67
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 215 ALVG--CMDL-DSFAEDKETTDKIVRSPCRQEDNGLDSSEVREKSVLCSG 261
A VG CMDL D+F E KETT++ ++ R L + R K ++ G
Sbjct: 167 AFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPG 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,775,436
Number of Sequences: 62578
Number of extensions: 528589
Number of successful extensions: 1004
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 39
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)