Query 014829
Match_columns 418
No_of_seqs 266 out of 1509
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 8E-35 1.7E-39 296.0 12.6 118 1-118 1-118 (459)
2 PLN03212 Transcription repress 100.0 3.2E-34 7E-39 274.0 11.5 117 2-118 13-129 (249)
3 KOG0048 Transcription factor, 100.0 8E-31 1.7E-35 252.5 9.9 112 9-120 4-115 (238)
4 KOG0049 Transcription factor, 99.8 1.3E-19 2.9E-24 190.3 6.0 111 1-112 347-458 (939)
5 KOG0049 Transcription factor, 99.8 9.4E-20 2E-24 191.4 4.3 145 8-152 247-448 (939)
6 KOG0048 Transcription factor, 99.8 6.4E-20 1.4E-24 177.0 -0.7 101 63-163 5-108 (238)
7 PLN03212 Transcription repress 99.7 3.6E-19 7.9E-24 170.9 1.3 112 44-163 10-124 (249)
8 PLN03091 hypothetical protein; 99.7 5.7E-18 1.2E-22 173.3 0.2 99 62-160 9-110 (459)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.6 8.5E-16 1.8E-20 117.4 3.5 60 17-78 1-60 (60)
10 COG5147 REB1 Myb superfamily p 99.5 5.9E-15 1.3E-19 155.2 6.8 113 9-122 15-127 (512)
11 KOG0050 mRNA splicing protein 99.5 3.7E-15 8E-20 154.2 3.0 105 12-118 5-109 (617)
12 PF00249 Myb_DNA-binding: Myb- 99.3 1.6E-12 3.5E-17 95.6 5.1 46 67-112 1-48 (48)
13 KOG0051 RNA polymerase I termi 99.3 1.2E-12 2.6E-17 139.2 5.9 135 13-150 383-554 (607)
14 PF13921 Myb_DNA-bind_6: Myb-l 99.3 1.2E-12 2.6E-17 100.0 2.4 55 70-124 1-56 (60)
15 PF00249 Myb_DNA-binding: Myb- 99.3 8.7E-13 1.9E-17 97.0 0.9 48 14-61 1-48 (48)
16 smart00717 SANT SANT SWI3, AD 99.1 1.4E-10 3E-15 82.8 5.7 47 67-113 1-48 (49)
17 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 1.2E-09 2.6E-14 76.9 5.5 44 69-112 1-45 (45)
18 smart00717 SANT SANT SWI3, AD 98.9 5.9E-10 1.3E-14 79.5 2.4 48 14-62 1-48 (49)
19 KOG0051 RNA polymerase I termi 98.9 7.8E-10 1.7E-14 118.0 3.5 120 12-133 306-452 (607)
20 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 3.5E-09 7.6E-14 74.4 2.1 45 16-61 1-45 (45)
21 COG5147 REB1 Myb superfamily p 98.3 2.6E-07 5.6E-12 98.1 1.3 96 64-159 17-114 (512)
22 KOG0050 mRNA splicing protein 98.0 2.1E-06 4.4E-11 90.2 0.9 92 65-157 5-98 (617)
23 KOG0457 Histone acetyltransfer 97.4 5.6E-05 1.2E-09 78.3 2.0 51 11-62 69-119 (438)
24 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00011 2.3E-09 56.6 2.6 49 13-61 2-54 (57)
25 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00044 9.5E-09 53.2 5.8 47 67-113 3-55 (57)
26 KOG0457 Histone acetyltransfer 97.2 0.00052 1.1E-08 71.4 5.5 51 64-114 69-120 (438)
27 TIGR02894 DNA_bind_RsfA transc 96.6 0.002 4.3E-08 59.2 3.8 50 66-116 3-59 (161)
28 PF13325 MCRS_N: N-terminal re 96.5 0.0096 2.1E-07 56.7 7.5 99 16-116 1-130 (199)
29 PF08914 Myb_DNA-bind_2: Rap1 96.5 0.0046 1E-07 48.9 4.5 50 67-116 2-61 (65)
30 COG5259 RSC8 RSC chromatin rem 96.4 0.0011 2.4E-08 69.5 1.2 46 13-60 278-323 (531)
31 PF13837 Myb_DNA-bind_4: Myb/S 96.4 0.0021 4.6E-08 52.2 2.6 50 67-116 1-68 (90)
32 COG5259 RSC8 RSC chromatin rem 96.3 0.0044 9.6E-08 65.1 4.4 45 67-111 279-323 (531)
33 KOG1279 Chromatin remodeling f 96.2 0.0022 4.8E-08 68.6 1.9 47 12-60 251-297 (506)
34 KOG1279 Chromatin remodeling f 96.1 0.0066 1.4E-07 65.1 5.1 46 66-111 252-297 (506)
35 COG5114 Histone acetyltransfer 95.4 0.027 5.8E-07 57.0 5.6 48 66-113 62-110 (432)
36 TIGR02894 DNA_bind_RsfA transc 95.2 0.0044 9.4E-08 57.0 -0.4 50 12-63 2-57 (161)
37 PF08914 Myb_DNA-bind_2: Rap1 95.1 0.011 2.5E-07 46.7 1.5 52 14-65 2-61 (65)
38 PRK13923 putative spore coat p 94.7 0.027 5.9E-07 52.4 3.4 50 66-116 4-60 (170)
39 PF13837 Myb_DNA-bind_4: Myb/S 94.5 0.0084 1.8E-07 48.6 -0.6 48 14-61 1-64 (90)
40 PLN03142 Probable chromatin-re 94.3 0.098 2.1E-06 60.8 7.3 102 15-117 825-989 (1033)
41 PF13873 Myb_DNA-bind_5: Myb/S 94.0 0.085 1.9E-06 42.0 4.3 49 67-115 2-72 (78)
42 COG5114 Histone acetyltransfer 93.7 0.024 5.2E-07 57.3 0.7 50 12-62 61-110 (432)
43 PF13873 Myb_DNA-bind_5: Myb/S 92.8 0.028 6.2E-07 44.8 -0.2 49 13-61 1-69 (78)
44 PRK13923 putative spore coat p 92.5 0.036 7.9E-07 51.6 0.0 49 12-62 3-57 (170)
45 COG5118 BDP1 Transcription ini 90.6 0.36 7.7E-06 50.1 4.8 45 69-113 367-411 (507)
46 KOG2656 DNA methyltransferase 89.7 0.35 7.5E-06 50.3 3.9 86 36-122 75-191 (445)
47 PF09111 SLIDE: SLIDE; InterP 89.2 0.62 1.3E-05 41.0 4.6 53 64-116 46-114 (118)
48 KOG4282 Transcription factor G 85.2 1.2 2.7E-05 45.3 4.8 50 68-117 55-118 (345)
49 KOG1194 Predicted DNA-binding 84.2 2.8 6E-05 44.7 6.8 47 67-113 187-233 (534)
50 PF12776 Myb_DNA-bind_3: Myb/S 83.5 2.4 5.2E-05 34.6 5.0 47 69-115 1-65 (96)
51 PF09111 SLIDE: SLIDE; InterP 77.8 0.86 1.9E-05 40.1 0.5 36 10-45 45-83 (118)
52 PF08281 Sigma70_r4_2: Sigma-7 75.7 6.6 0.00014 28.7 4.7 41 72-113 12-52 (54)
53 KOG4167 Predicted DNA-binding 70.0 6.8 0.00015 44.1 5.0 45 68-112 620-664 (907)
54 COG5118 BDP1 Transcription ini 69.1 2.6 5.7E-05 43.9 1.6 64 14-79 365-436 (507)
55 KOG4282 Transcription factor G 66.4 2.3 4.9E-05 43.4 0.5 48 14-61 54-113 (345)
56 PF13404 HTH_AsnC-type: AsnC-t 65.8 11 0.00024 27.0 3.9 38 73-111 3-41 (42)
57 PRK11179 DNA-binding transcrip 63.7 13 0.00027 33.5 4.8 44 73-117 9-53 (153)
58 PF01388 ARID: ARID/BRIGHT DNA 61.5 15 0.00032 30.0 4.4 38 77-114 40-90 (92)
59 PF11626 Rap1_C: TRF2-interact 60.6 8.1 0.00018 31.8 2.7 29 10-41 43-79 (87)
60 KOG4468 Polycomb-group transcr 60.4 12 0.00026 41.4 4.6 56 67-122 88-153 (782)
61 PRK11169 leucine-responsive tr 57.1 16 0.00034 33.3 4.2 45 72-117 13-58 (164)
62 smart00501 BRIGHT BRIGHT, ARID 56.2 20 0.00044 29.4 4.5 39 77-115 36-87 (93)
63 PF13325 MCRS_N: N-terminal re 55.6 21 0.00045 34.4 4.9 44 69-113 1-47 (199)
64 KOG4329 DNA-binding protein [G 53.3 1.1E+02 0.0023 32.3 9.8 56 69-124 279-335 (445)
65 KOG2009 Transcription initiati 51.0 16 0.00034 40.3 3.7 48 66-113 408-455 (584)
66 PF04545 Sigma70_r4: Sigma-70, 50.4 37 0.00081 24.4 4.6 41 73-114 7-47 (50)
67 KOG0384 Chromodomain-helicase 48.0 19 0.00041 43.0 3.9 74 13-93 1132-1206(1373)
68 PF13404 HTH_AsnC-type: AsnC-t 47.3 7.5 0.00016 27.9 0.4 38 20-59 3-40 (42)
69 KOG2656 DNA methyltransferase 46.3 12 0.00026 39.4 1.8 51 10-61 126-181 (445)
70 smart00595 MADF subfamily of S 46.1 17 0.00037 29.2 2.4 26 89-115 30-55 (89)
71 PF12776 Myb_DNA-bind_3: Myb/S 45.1 18 0.00038 29.4 2.4 45 16-60 1-61 (96)
72 KOG4167 Predicted DNA-binding 42.5 12 0.00026 42.2 1.3 44 14-59 619-662 (907)
73 PF11626 Rap1_C: TRF2-interact 42.5 22 0.00047 29.3 2.5 17 63-79 43-59 (87)
74 PRK11179 DNA-binding transcrip 38.4 15 0.00032 33.1 0.9 46 19-66 8-53 (153)
75 TIGR02985 Sig70_bacteroi1 RNA 37.6 61 0.0013 27.9 4.7 36 77-113 120-155 (161)
76 smart00344 HTH_ASNC helix_turn 37.2 66 0.0014 26.6 4.7 43 73-116 3-46 (108)
77 PF07750 GcrA: GcrA cell cycle 34.5 46 0.001 30.8 3.6 41 69-110 2-42 (162)
78 PRK11169 leucine-responsive tr 33.8 14 0.00031 33.6 0.1 46 19-66 13-58 (164)
79 KOG4468 Polycomb-group transcr 32.9 37 0.00081 37.7 3.1 48 14-62 88-144 (782)
80 cd08319 Death_RAIDD Death doma 32.6 52 0.0011 27.2 3.2 29 75-104 2-30 (83)
81 PF11035 SnAPC_2_like: Small n 31.3 1.2E+02 0.0026 31.3 6.1 88 14-115 21-129 (344)
82 PF09420 Nop16: Ribosome bioge 31.2 1.1E+02 0.0024 28.0 5.5 47 66-112 113-163 (164)
83 PF11035 SnAPC_2_like: Small n 29.9 1.3E+02 0.0027 31.2 6.0 48 67-114 21-72 (344)
84 PLN03142 Probable chromatin-re 28.8 30 0.00064 40.9 1.6 34 12-45 924-957 (1033)
85 COG1522 Lrp Transcriptional re 28.2 95 0.0021 27.1 4.4 45 73-118 8-53 (154)
86 cd08803 Death_ank3 Death domai 28.2 78 0.0017 26.1 3.6 30 75-105 4-33 (84)
87 TIGR02937 sigma70-ECF RNA poly 25.7 1.1E+02 0.0025 25.3 4.4 33 81-114 121-153 (158)
88 PF10545 MADF_DNA_bdg: Alcohol 24.5 62 0.0013 25.1 2.3 27 89-115 29-56 (85)
89 KOG1194 Predicted DNA-binding 24.4 37 0.0008 36.5 1.2 45 13-59 186-230 (534)
90 cd08317 Death_ank Death domain 22.8 79 0.0017 25.6 2.6 30 75-105 4-33 (84)
91 PF09197 Rap1-DNA-bind: Rap1, 21.6 1.9E+02 0.0042 25.1 4.9 47 69-115 1-78 (105)
92 PRK09652 RNA polymerase sigma 20.3 1.7E+02 0.0036 25.7 4.5 29 84-113 142-170 (182)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=8e-35 Score=295.99 Aligned_cols=118 Identities=63% Similarity=1.162 Sum_probs=114.6
Q ss_pred CCCCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHH
Q 014829 1 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIK 80 (418)
Q Consensus 1 mgR~p~c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~ 80 (418)
|||++||+|++++||+||+|||++|+++|++||..+|..||+.++.+|+++|||+||.+||+|.+++++||+|||.+|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998755999999999999999999999999999999999
Q ss_pred HHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 81 LHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 81 lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
+|.+||++|..||++|||||+++||+||+.+|+++++.
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~ 118 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=3.2e-34 Score=274.05 Aligned_cols=117 Identities=66% Similarity=1.311 Sum_probs=112.0
Q ss_pred CCCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHH
Q 014829 2 GRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKL 81 (418)
Q Consensus 2 gR~p~c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~l 81 (418)
-|.|||.|++++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|+++
T Consensus 13 ~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel 92 (249)
T PLN03212 13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL 92 (249)
T ss_pred CCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence 37899999999999999999999999999999989999999996459999999999999999999999999999999999
Q ss_pred HHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 82 HASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 82 v~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
+..||++|+.||++|||||+++||+||+.+|++++..
T Consensus 93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r 129 (249)
T PLN03212 93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR 129 (249)
T ss_pred HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999999999988743
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=8e-31 Score=252.54 Aligned_cols=112 Identities=61% Similarity=1.015 Sum_probs=106.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCC
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNR 88 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~ 88 (418)
|+.+.||+||+|||++|+++|++||.++|..||+.++.+|++++||.||.|||+|++++|.||+|||.+|++|+..||++
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr 83 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR 83 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence 34456899999999999999999999999999999995599999999999999999999999999999999999999999
Q ss_pred hhHHhhhCCCCChHHHHHHHHHhhhhhhcCCC
Q 014829 89 WSLIASNMPGRTDNEIKNYWNSHLSRKIHTFW 120 (418)
Q Consensus 89 W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~~~ 120 (418)
|+.||++|||||++.|||+|+.+|++++....
T Consensus 84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999986544
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.78 E-value=1.3e-19 Score=190.30 Aligned_cols=111 Identities=23% Similarity=0.397 Sum_probs=103.2
Q ss_pred CCCCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHH
Q 014829 1 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIK 80 (418)
Q Consensus 1 mgR~p~c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~ 80 (418)
+||+.....|++++|+||++||.+|+.+|.+||.++|.+|-..+|+ |+..|||+||.|.|+...|.+.||-.||..|+.
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn-RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~ 425 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN-RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY 425 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC-ccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence 4788899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHhcC-CChhHHhhhCCCCChHHHHHHHHHhh
Q 014829 81 LHASLG-NRWSLIASNMPGRTDNEIKNYWNSHL 112 (418)
Q Consensus 81 lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L 112 (418)
+|.+|| .+|.+||..||.||.+|.+.|-...+
T Consensus 426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~ 458 (939)
T KOG0049|consen 426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI 458 (939)
T ss_pred HHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence 999999 79999999999999976655444333
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.78 E-value=9.4e-20 Score=191.43 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=130.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc---------------------------------
Q 014829 8 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCR--------------------------------- 54 (418)
Q Consensus 8 ~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr--------------------------------- 54 (418)
..|.++|..|++|||++|..+...++..+|..||..+++.|+..||.
T Consensus 247 l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~n 326 (939)
T KOG0049|consen 247 LNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSIN 326 (939)
T ss_pred cCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhcc
Confidence 34999999999999999999999999999999999999999999997
Q ss_pred ---------------------chhhhhccCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhh
Q 014829 55 ---------------------LRWINYLRADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHL 112 (418)
Q Consensus 55 ---------------------~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L 112 (418)
-||.+.|+|.+++|+||.+||.+|+++|.+|| ..|.+|...+|||+..|||.||.+.|
T Consensus 327 ShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL 406 (939)
T KOG0049|consen 327 SHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVL 406 (939)
T ss_pred CccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHH
Confidence 45555688999999999999999999999999 67999999999999999999999999
Q ss_pred hhhh-cCCCCCCCCCCCCcccccccC-CCCcCcCCCCCCChh
Q 014829 113 SRKI-HTFWRPSSEKTLPVKVDVAAA-GTGVASDRKAGKKIG 152 (418)
Q Consensus 113 ~~~i-~~~~~~~ed~~l~~~~~~~g~-k~~~iak~~~GRtS~ 152 (418)
.... ...|+-.+++++..++...|. .|..++..++.++++
T Consensus 407 ~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~ 448 (939)
T KOG0049|consen 407 NRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSR 448 (939)
T ss_pred HHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchh
Confidence 9887 677888999998888887765 488888888888873
No 6
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.76 E-value=6.4e-20 Score=176.96 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=93.0
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCC-CCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCC
Q 014829 63 ADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMP-GRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGT 139 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~ 139 (418)
+.+.||+||+|||.+|+++|++|| .+|..||+.++ +|++++||.||.+||+|.| ++.|+++|+..+..++...|++|
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW 84 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW 84 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence 345579999999999999999999 67999999998 9999999999999999999 67788999999999999999999
Q ss_pred CcCcCCCCCCChhhhhcccCCCCC
Q 014829 140 GVASDRKAGKKIGSAIMKNKSHSK 163 (418)
Q Consensus 140 ~~iak~~~GRtS~s~knr~k~~~~ 163 (418)
+.||+++||||+|.|||++.++.+
T Consensus 85 s~IA~~LPGRTDNeIKN~Wnt~lk 108 (238)
T KOG0048|consen 85 SLIAGRLPGRTDNEVKNHWNTHLK 108 (238)
T ss_pred HHHHhhCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999755543
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.74 E-value=3.6e-19 Score=170.89 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=99.0
Q ss_pred cccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhC-CCCChHHHHHHHHHhhhhhh-cCCC
Q 014829 44 AGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNM-PGRTDNEIKNYWNSHLSRKI-HTFW 120 (418)
Q Consensus 44 l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~l-pgRT~~qck~Rw~~~L~~~i-~~~~ 120 (418)
+++ |++--|. ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||.||.++|+|.+ +..|
T Consensus 10 ~~~-~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW 81 (249)
T PLN03212 10 VSK-KTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI 81 (249)
T ss_pred CCC-CCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence 455 5555453 3578899999999999999999999 6899999998 69999999999999999999 7789
Q ss_pred CCCCCCCCCcccccccCCCCcCcCCCCCCChhhhhcccCCCCC
Q 014829 121 RPSSEKTLPVKVDVAAAGTGVASDRKAGKKIGSAIMKNKSHSK 163 (418)
Q Consensus 121 ~~~ed~~l~~~~~~~g~k~~~iak~~~GRtS~s~knr~k~~~~ 163 (418)
+.+++..+...+...|.+|..|++.++|||.+.+|||+..+.+
T Consensus 82 T~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 82 TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred ChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999654433
No 8
>PLN03091 hypothetical protein; Provisional
Probab=99.67 E-value=5.7e-18 Score=173.32 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=92.5
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhC-CCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCC
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNM-PGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAG 138 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~l-pgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k 138 (418)
++.+++++||+|||++|+++|.+|| .+|..||+.+ ++|+++|||.||.++|+|.+ +..|+++++..+...+...|.+
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK 88 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence 3678899999999999999999999 5899999988 59999999999999999999 7889999999999999999999
Q ss_pred CCcCcCCCCCCChhhhhcccCC
Q 014829 139 TGVASDRKAGKKIGSAIMKNKS 160 (418)
Q Consensus 139 ~~~iak~~~GRtS~s~knr~k~ 160 (418)
|..|++.++||+.+.+|||+..
T Consensus 89 WskIAk~LPGRTDnqIKNRWns 110 (459)
T PLN03091 89 WSQIAAQLPGRTDNEIKNLWNS 110 (459)
T ss_pred hHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999999544
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.58 E-value=8.5e-16 Score=117.42 Aligned_cols=60 Identities=38% Similarity=0.807 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHH
Q 014829 17 WTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEII 78 (418)
Q Consensus 17 WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~L 78 (418)
||++||++|+++|++|| .+|..||..|+. |++.||+.||.++|.|.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~-Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGN-RTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTT-S-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCc-CCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 589999999976 9999999999999999999999999999987
No 10
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.54 E-value=5.9e-15 Score=155.16 Aligned_cols=113 Identities=28% Similarity=0.427 Sum_probs=105.8
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCC
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNR 88 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~ 88 (418)
...++.|.|+..||+.|..+|++||+++|..||+.+.. |+++||+.||.++++|.+++..|+.+||..|+.+..++|.+
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence 35678899999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred hhHHhhhCCCCChHHHHHHHHHhhhhhhcCCCCC
Q 014829 89 WSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRP 122 (418)
Q Consensus 89 W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~~~~~ 122 (418)
|+.||..+++|+..+|.+||...+.......++.
T Consensus 94 wstia~~~d~rt~~~~~ery~~~~~~~~s~~~s~ 127 (512)
T COG5147 94 WSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSK 127 (512)
T ss_pred hhhhccccCccchHHHHHHHHHHhhhhhcccccc
Confidence 9999999999999999999999998877643333
No 11
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3.7e-15 Score=154.19 Aligned_cols=105 Identities=25% Similarity=0.531 Sum_probs=100.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChhH
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSL 91 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~ 91 (418)
++.|-|+.-||+.|..+|++||.+.|.+||+.+.. .+++||+.||..+|+|.+++..|+.+||++|+.+...+-..|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~-kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt 83 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT 83 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence 67899999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 92 IASNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 92 IA~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
||..| ||+++||-.||+++|...+..
T Consensus 84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~ 109 (617)
T KOG0050|consen 84 IADIM-GRTSQQCLERYNNLLDVYVSY 109 (617)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence 99999 999999999999999888743
No 12
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.33 E-value=1.6e-12 Score=95.58 Aligned_cols=46 Identities=35% Similarity=0.640 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC-hhHHhhhCC-CCChHHHHHHHHHhh
Q 014829 67 RGNITAEEEEIIIKLHASLGNR-WSLIASNMP-GRTDNEIKNYWNSHL 112 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~-W~~IA~~lp-gRT~~qck~Rw~~~L 112 (418)
|++||++||.+|+++|.+||.. |..||..|| +||+.||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999987 999999999 999999999999875
No 13
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.32 E-value=1.2e-12 Score=139.21 Aligned_cols=135 Identities=23% Similarity=0.442 Sum_probs=107.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCC--cCCCCCHHHHHHHHHHHH-------
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADL--KRGNITAEEEEIIIKLHA------- 83 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~i--kkg~WT~EED~~Ll~lv~------- 83 (418)
.+|+||++|++.|..+|.++| +.|..|+..|+ |.+..||+||+++..+.- +++.||.+|.++|+++|+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999 69999999998 999999999999999874 889999999999999995
Q ss_pred hc-------------------CCChhHHhhhCCCCChHHHHHHHHHhhhhhhcCC-CCCC-CCC-------CCCcccccc
Q 014829 84 SL-------------------GNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTF-WRPS-SEK-------TLPVKVDVA 135 (418)
Q Consensus 84 ~~-------------------G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~~-~~~~-ed~-------~l~~~~~~~ 135 (418)
++ +-+|..|+..+..|+..|||.+|+.++....... .... .+. ........-
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~ 539 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES 539 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence 33 1269999999999999999999999887765221 1111 010 011222344
Q ss_pred cCCCCcCcCCCCCCC
Q 014829 136 AAGTGVASDRKAGKK 150 (418)
Q Consensus 136 g~k~~~iak~~~GRt 150 (418)
...|..++...+|..
T Consensus 540 ~IDW~~l~~~~~g~~ 554 (607)
T KOG0051|consen 540 PIDWKSLAEYAPGES 554 (607)
T ss_pred ccCHHHHHHhCCCCC
Confidence 456777777777775
No 14
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.29 E-value=1.2e-12 Score=99.96 Aligned_cols=55 Identities=35% Similarity=0.669 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCC
Q 014829 70 ITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSS 124 (418)
Q Consensus 70 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~e 124 (418)
||++||.+|+++|.+||.+|..||.+|+.||+.||++||+++|++.+ +..|++.+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eE 56 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEE 56 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHH
Confidence 99999999999999999999999999966999999999999887766 44454443
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.27 E-value=8.7e-13 Score=97.00 Aligned_cols=48 Identities=35% Similarity=0.697 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhc
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L 61 (418)
|++||++||++|+++|.+||.++|..||..|+++||+.||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999997669999999993499999999999875
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.11 E-value=1.4e-10 Score=82.80 Aligned_cols=47 Identities=40% Similarity=0.820 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 67 RGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
+++||++||.+|+.++.+|| .+|..||..|++||+.+|+.||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998775
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.96 E-value=1.2e-09 Score=76.86 Aligned_cols=44 Identities=34% Similarity=0.712 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhh
Q 014829 69 NITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHL 112 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L 112 (418)
+||++|+.+|++++.+|| .+|..||..|++||+.+|++||++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998763
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.91 E-value=5.9e-10 Score=79.51 Aligned_cols=48 Identities=38% Similarity=0.844 Sum_probs=44.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhcc
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
++.||++||.+|+.++..||..+|..||..+++ |++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~-rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCHHHHHHHHHHHcC
Confidence 478999999999999999996699999999997 999999999998764
No 19
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.89 E-value=7.8e-10 Score=118.04 Aligned_cols=120 Identities=25% Similarity=0.336 Sum_probs=100.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC---------------CC--------ccccccccccccccccccchhhhhccCCC-cC
Q 014829 12 LKKGRWTAEEDDILTKYIQANGE---------------GS--------WRSLPKNAGLLRCGKSCRLRWINYLRADL-KR 67 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~---------------~~--------W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~i-kk 67 (418)
++-+.|+++||++|.+.|..|-. .. |..|...||. |+....+.+-++...|-- ++
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCcccccc
Confidence 34489999999999999998821 01 6778888998 999988774444444433 89
Q ss_pred CCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhh---hcCCCCCCCCCCCCcccc
Q 014829 68 GNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK---IHTFWRPSSEKTLPVKVD 133 (418)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~---i~~~~~~~ed~~l~~~~~ 133 (418)
|.||++|++.|..+|.++|+.|..|+..| ||.+..|+.||+.+.... -++.|+.++.+.+...+.
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~ 452 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN 452 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999887 477888888887766664
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.76 E-value=3.5e-09 Score=74.43 Aligned_cols=45 Identities=38% Similarity=0.779 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhc
Q 014829 16 RWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 (418)
Q Consensus 16 ~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L 61 (418)
+||++||..|+.++.+||..+|..||..+++ |++.||+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHhC
Confidence 5999999999999999997799999999998 99999999998753
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.26 E-value=2.6e-07 Score=98.05 Aligned_cols=96 Identities=23% Similarity=0.339 Sum_probs=87.6
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCCc
Q 014829 64 DLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTGV 141 (418)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~~ 141 (418)
..+.|.|+..||..|..+|+.|| ++|+.||..|.-|+++||++||++++.+.+ ++.++.+++.++.......|..|..
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wst 96 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhh
Confidence 45678999999999999999999 689999999988999999999999999999 6677788888888888899999999
Q ss_pred CcCCCCCCChhhhhcccC
Q 014829 142 ASDRKAGKKIGSAIMKNK 159 (418)
Q Consensus 142 iak~~~GRtS~s~knr~k 159 (418)
|+...+||+.....+++.
T Consensus 97 ia~~~d~rt~~~~~ery~ 114 (512)
T COG5147 97 IADYKDRRTAQQCVERYV 114 (512)
T ss_pred hccccCccchHHHHHHHH
Confidence 999999999999988853
No 22
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=2.1e-06 Score=90.20 Aligned_cols=92 Identities=23% Similarity=0.369 Sum_probs=78.2
Q ss_pred CcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCCcC
Q 014829 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTGVA 142 (418)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~~i 142 (418)
++.|.|+.-||+.|..+|.+|| +.|+.|++.++-.|+.||++||..+|.+.| +..|+.+++..+.......-..|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 5678999999999999999999 689999999999999999999999999999 56678888888877777777788888
Q ss_pred cCCCCCCChhhhhcc
Q 014829 143 SDRKAGKKIGSAIMK 157 (418)
Q Consensus 143 ak~~~GRtS~s~knr 157 (418)
++.. ||+++.---|
T Consensus 85 a~i~-gr~~~qc~eR 98 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLER 98 (617)
T ss_pred HHHh-hhhHHHHHHH
Confidence 7665 4777655444
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.44 E-value=5.6e-05 Score=78.35 Aligned_cols=51 Identities=20% Similarity=0.539 Sum_probs=47.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhcc
Q 014829 11 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 11 ~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
.+-...||.+|+-+|+++++.||.+||..||.++++ |+..+|+++|.+++.
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGt-Ktkeeck~hy~k~fv 119 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGT-KTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcc-cchHHHHHHHHHHHh
Confidence 456678999999999999999999999999999998 999999999998754
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.40 E-value=0.00011 Score=56.62 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccchhhhhc
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSW---RSLPKNAGLLR-CGKSCRLRWINYL 61 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W---~~IA~~l~~~R-s~~QCr~Rw~~~L 61 (418)
++-.||+||..+++.+|+.+|.++| ..|+..|...| |..||+.|++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3557999999999999999998799 99999987656 9999999988764
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.39 E-value=0.00044 Score=53.25 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-Ch---hHHhhhCC-CC-ChHHHHHHHHHhhh
Q 014829 67 RGNITAEEEEIIIKLHASLGN-RW---SLIASNMP-GR-TDNEIKNYWNSHLS 113 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~W---~~IA~~lp-gR-T~~qck~Rw~~~L~ 113 (418)
+-.||+||..++++++..||. +| ..|+..|. .| |..||+.+++.+..
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 558999999999999999995 99 99999884 45 99999999988753
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00052 Score=71.36 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=45.5
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 64 DLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
.+-...||.+|+.+||+++..|| ++|..||.++..|+..+|+.+|.+++-.
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 34456899999999999999999 8999999999999999999999876543
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.60 E-value=0.002 Score=59.23 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHHHHHhc---CC----ChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 66 KRGNITAEEEEIIIKLHASL---GN----RWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~---G~----~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+...||.+||.+|...|-+| |. -+..++..| +||+.+|.-||++++++.-
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY 59 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQY 59 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHH
Confidence 35689999999999999887 42 499999999 9999999999999999764
No 28
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.46 E-value=0.0096 Score=56.75 Aligned_cols=99 Identities=17% Similarity=0.315 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccc--cccccccchhhhhcc-CCC--------------------cCCCCCH
Q 014829 16 RWTAEEDDILTKYIQANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLR-ADL--------------------KRGNITA 72 (418)
Q Consensus 16 ~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~--Rs~~QCr~Rw~~~L~-p~i--------------------kkg~WT~ 72 (418)
+|++++|-+|+.+|+.-. +-..|+.-+.-. -|-....+||+..|. |.+ .+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998754 566666554432 355677899998753 221 3458999
Q ss_pred HHHHHHHHHHHhcCC---ChhHHhh-----hCCCCChHHHHHHHHHhhhhhh
Q 014829 73 EEEEIIIKLHASLGN---RWSLIAS-----NMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 73 EED~~Ll~lv~~~G~---~W~~IA~-----~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+|+++|......... .+.+|-. +-++||+.++..+|+.+.+..+
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L 130 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL 130 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence 999999997766542 5777632 2389999999999996655544
No 29
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.45 E-value=0.0046 Score=48.85 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC--------C-ChhHHhhhCC-CCChHHHHHHHHHhhhhhh
Q 014829 67 RGNITAEEEEIIIKLHASLG--------N-RWSLIASNMP-GRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G--------~-~W~~IA~~lp-gRT~~qck~Rw~~~L~~~i 116 (418)
+.+||.+||+.|++.|..+. + -|..++..-| .+|-...|+||...|+++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 45899999999999996542 1 2999998877 9999999999999988764
No 30
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.44 E-value=0.0011 Score=69.51 Aligned_cols=46 Identities=20% Similarity=0.559 Sum_probs=42.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~ 60 (418)
....||.+|-.+|++.|+.|| .+|.+||.++++ |+..||..||.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgt-Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGT-KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCC-CCHHHHHHHHHcC
Confidence 566999999999999999999 489999999998 9999999998874
No 31
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.43 E-value=0.0021 Score=52.16 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHh------cC--C------ChhHHhhhC----CCCChHHHHHHHHHhhhhhh
Q 014829 67 RGNITAEEEEIIIKLHAS------LG--N------RWSLIASNM----PGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~------~G--~------~W~~IA~~l----pgRT~~qck~Rw~~~L~~~i 116 (418)
|..||.+|...||.++.. ++ . .|..||..| ..||+.||+.||.++.+...
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk 68 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK 68 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 347999999999999876 21 1 499999887 46999999999999877654
No 32
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.27 E-value=0.0044 Score=65.12 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHh
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (418)
..+||.+|-.+|++.++.||..|.+||+++..||..||--||-++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 348999999999999999999999999999999999999999754
No 33
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.19 E-value=0.0022 Score=68.62 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=43.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~ 60 (418)
--++.||.+|..+|+++|+.||. +|.+||.++++ |+..||..++.+.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~-ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGT-KSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCC-CCHHHHHHHHHhc
Confidence 45678999999999999999994 99999999998 9999999998764
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.14 E-value=0.0066 Score=65.09 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHh
Q 014829 66 KRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (418)
.+..||.+|..+|++.|..||-.|.+||.++.+||..||-.+|..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999999998754
No 35
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.37 E-value=0.027 Score=57.00 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
-...|+..|+.+|++....+| ++|..||.++..|+...||.+|.++..
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 345799999999999999999 899999999999999999999887654
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.24 E-value=0.0044 Score=57.04 Aligned_cols=50 Identities=24% Similarity=0.574 Sum_probs=42.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC------CCccccccccccccccccccchhhhhccC
Q 014829 12 LKKGRWTAEEDDILTKYIQANGE------GSWRSLPKNAGLLRCGKSCRLRWINYLRA 63 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~------~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p 63 (418)
.++..||.|||.+|...|-+|-. .....|+..+. ||+..|.-||..+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence 47889999999999999999931 14788888888 9999999999998873
No 37
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.06 E-value=0.011 Score=46.65 Aligned_cols=52 Identities=27% Similarity=0.472 Sum_probs=33.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC------C--CccccccccccccccccccchhhhhccCCC
Q 014829 14 KGRWTAEEDDILTKYIQANGE------G--SWRSLPKNAGLLRCGKSCRLRWINYLRADL 65 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~------~--~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~i 65 (418)
+.+||.+||+.|+..|..+.. + =|..++..-++.+|-.+-|+||..+|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 457999999999999976631 1 299999988865888888999999987643
No 38
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.75 E-value=0.027 Score=52.43 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=42.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC-------ChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLGN-------RWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~-------~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+...||.|+|.+|-+.|-.|+. -...++..| +||+.+|.-||+.+++..-
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 4668999999999888888863 277778888 9999999999999998653
No 39
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.46 E-value=0.0084 Score=48.62 Aligned_cols=48 Identities=23% Similarity=0.560 Sum_probs=33.3
Q ss_pred cCCCCHHHHHHHHHHHHH--h----C--CC-----Cccccccccc---cccccccccchhhhhc
Q 014829 14 KGRWTAEEDDILTKYIQA--N----G--EG-----SWRSLPKNAG---LLRCGKSCRLRWINYL 61 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~k--y----G--~~-----~W~~IA~~l~---~~Rs~~QCr~Rw~~~L 61 (418)
+..||.+|...|+.++.. + + .. -|..||..|. ..|++.||+.||.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 357999999999999988 2 1 01 3999998874 3499999999998853
No 40
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.31 E-value=0.098 Score=60.79 Aligned_cols=102 Identities=12% Similarity=0.246 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------hhhhh---------------------------
Q 014829 15 GRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRL-------RWINY--------------------------- 60 (418)
Q Consensus 15 g~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~-------Rw~~~--------------------------- 60 (418)
..|+..+=..++.+..+||..+-..||..|.+ ++...++. ||...
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~ 903 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI 903 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888999999999998889999998876 77666551 11110
Q ss_pred ---------------c-cCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhh------------CCCCChHHHHHHHHHh
Q 014829 61 ---------------L-RADLKRGNITAEEEEIIIKLHASLG-NRWSLIASN------------MPGRTDNEIKNYWNSH 111 (418)
Q Consensus 61 ---------------L-~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~------------lpgRT~~qck~Rw~~~ 111 (418)
+ .+..++..||.+||..|+..+.+|| .+|..|-.. +..||+..+..|...+
T Consensus 904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 0 1233445799999999999999999 789998432 2579999999999998
Q ss_pred hhhhhc
Q 014829 112 LSRKIH 117 (418)
Q Consensus 112 L~~~i~ 117 (418)
|+-..+
T Consensus 984 ~~~~~~ 989 (1033)
T PLN03142 984 IRLIEK 989 (1033)
T ss_pred HHHHHH
Confidence 876543
No 41
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.98 E-value=0.085 Score=42.02 Aligned_cols=49 Identities=27% Similarity=0.512 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CC------------ChhHHhhhC-----CCCChHHHHHHHHHhhhhh
Q 014829 67 RGNITAEEEEIIIKLHASL-----GN------------RWSLIASNM-----PGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~-----G~------------~W~~IA~~l-----pgRT~~qck~Rw~~~L~~~ 115 (418)
+..||.+|...|+.+|.+| |. -|..|+..| +.||..|++.+|.++....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999886 21 399999876 3699999999999876543
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=93.69 E-value=0.024 Score=57.34 Aligned_cols=50 Identities=18% Similarity=0.500 Sum_probs=45.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhcc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
|---.|+..|+.+|+++.+..|.+||..||..+|. |....|+.+|..++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGs-r~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGS-RAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhh-hhhHHHHHHHHHHHh
Confidence 44457999999999999999999999999999997 999999999998765
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=92.78 E-value=0.028 Score=44.79 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=39.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----ccccccccccchhhhhc
Q 014829 13 KKGRWTAEEDDILTKYIQANGE----------------GSWRSLPKNA----GLLRCGKSCRLRWINYL 61 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~----------------~~W~~IA~~l----~~~Rs~~QCr~Rw~~~L 61 (418)
++..||++|...|+.+|.+|.. .-|..|+..+ ++.|+..|++.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999831 1399999776 22499999999998864
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=92.49 E-value=0.036 Score=51.61 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=39.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCC------ccccccccccccccccccchhhhhcc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGS------WRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~------W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
.++..||.|+|.+|...|-+|+... ...++..+. |++.+|..||..+++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence 5789999999999999999996432 444555555 999999999977665
No 45
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=90.58 E-value=0.36 Score=50.09 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 69 NITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
+||.+|-.+..++...+|..++.||..+|.|..+|||.+|.+--+
T Consensus 367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek 411 (507)
T COG5118 367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK 411 (507)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999986543
No 46
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=89.72 E-value=0.35 Score=50.32 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=63.0
Q ss_pred CccccccccccccccccccchhhhhccCC-------------------------CcCCCCCHHHHHHHHHHHHhcCCChh
Q 014829 36 SWRSLPKNAGLLRCGKSCRLRWINYLRAD-------------------------LKRGNITAEEEEIIIKLHASLGNRWS 90 (418)
Q Consensus 36 ~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~-------------------------ikkg~WT~EED~~Ll~lv~~~G~~W~ 90 (418)
.|.-++-..+- |...--..||....++. +....||.+|-+.|..|++.|.-+|-
T Consensus 75 ~W~w~pFtn~a-RkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTNSA-RKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCCcc-ccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 57666654454 65555566666552211 22346999999999999999999999
Q ss_pred HHhhh-----CCC-CChHHHHHHHHHhhhhhhcCCCCC
Q 014829 91 LIASN-----MPG-RTDNEIKNYWNSHLSRKIHTFWRP 122 (418)
Q Consensus 91 ~IA~~-----lpg-RT~~qck~Rw~~~L~~~i~~~~~~ 122 (418)
.||.+ ++. ||-..+|.||+...+..++....+
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s 191 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS 191 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 99977 555 999999999998887776554333
No 47
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=89.25 E-value=0.62 Score=41.03 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=41.4
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcCC----ChhHHhhhC------------CCCChHHHHHHHHHhhhhhh
Q 014829 64 DLKRGNITAEEEEIIIKLHASLGN----RWSLIASNM------------PGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G~----~W~~IA~~l------------pgRT~~qck~Rw~~~L~~~i 116 (418)
..++..||.+||..|+.++.+||- .|..|...+ ..||+..+..|...+|+-..
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~ 114 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE 114 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence 456779999999999999999996 798886532 46999999999999887543
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=85.21 E-value=1.2 Score=45.28 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhc----------CCChhHHhhhC----CCCChHHHHHHHHHhhhhhhc
Q 014829 68 GNITAEEEEIIIKLHASL----------GNRWSLIASNM----PGRTDNEIKNYWNSHLSRKIH 117 (418)
Q Consensus 68 g~WT~EED~~Ll~lv~~~----------G~~W~~IA~~l----pgRT~~qck~Rw~~~L~~~i~ 117 (418)
..|+.+|-..||++.... +..|..||+.| .-||+.|||+||.++.++..+
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999887542 23599999855 459999999999999887763
No 49
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=84.20 E-value=2.8 Score=44.68 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
...||.||--++-++...||+++.+|.+.||.|+-..+...|+..-+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK 233 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999998876543
No 50
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=83.50 E-value=2.4 Score=34.57 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhc---CC----------ChhHHhhhC---C--CCChHHHHHHHHHhhhhh
Q 014829 69 NITAEEEEIIIKLHASL---GN----------RWSLIASNM---P--GRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~---G~----------~W~~IA~~l---p--gRT~~qck~Rw~~~L~~~ 115 (418)
.||++.+..|++++.+. |+ .|..|+..| + ..+..||++||..+-+..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 49999999999988542 21 399999877 2 357789999998765543
No 51
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=77.76 E-value=0.86 Score=40.13 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=29.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccc
Q 014829 10 VGLKKGRWTAEEDDILTKYIQANGE---GSWRSLPKNAG 45 (418)
Q Consensus 10 p~lkKg~WT~EED~~L~~lV~kyG~---~~W~~IA~~l~ 45 (418)
|.-++..||.+||.-|+-++.+||. +.|..|-..+.
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir 83 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIR 83 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 4667889999999999999999998 88999976654
No 52
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=75.73 E-value=6.6 Score=28.72 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 72 AEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 72 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
++++..++.++-..|-.+.+||..+ |.|...++.+.+..++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4577888888888999999999999 9999999998876554
No 53
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=70.03 E-value=6.8 Score=44.09 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhh
Q 014829 68 GNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHL 112 (418)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L 112 (418)
..||+.|-.+.-+++-.|.+.+-.|++.++++|-.||-..|+..-
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWK 664 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWK 664 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999877543
No 54
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=69.13 E-value=2.6 Score=43.93 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=49.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh--ccCC-----C-cCCCCCHHHHHHHH
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY--LRAD-----L-KRGNITAEEEEIII 79 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~--L~p~-----i-kkg~WT~EED~~Ll 79 (418)
--+||.+|-++..++....|+ +..-||..+|. |..+|++..|.+- .+|. + .+.|+..+|-.+|.
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~-R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~ 436 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGT-DFSLISSLFPN-RERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR 436 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCc-hhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence 346999999999999999996 89999999999 9999999999863 2221 1 23466666654433
No 55
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=66.36 E-value=2.3 Score=43.36 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=37.5
Q ss_pred cCCCCHHHHHHHHHHHHHh----CC-----CCccccccccc---cccccccccchhhhhc
Q 014829 14 KGRWTAEEDDILTKYIQAN----GE-----GSWRSLPKNAG---LLRCGKSCRLRWINYL 61 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~ky----G~-----~~W~~IA~~l~---~~Rs~~QCr~Rw~~~L 61 (418)
...|+.+|-..|+.+..+. .. .-|..||..+. ..|++.||+.+|.+..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3789999999999988753 11 24999998543 3499999999998854
No 56
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=65.75 E-value=11 Score=26.99 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHh
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (418)
+=|.+|+.+.+.-| ..+..||..+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 35788999998888 5799999999 99999999998764
No 57
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=63.65 E-value=13 Score=33.50 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhhc
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKIH 117 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~ 117 (418)
+-|.+|+.+.++-| ..|+.||+.+ |-|...|+.|++.+....+-
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 47889999999988 6899999999 99999999999999888764
No 58
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=61.54 E-value=15 Score=29.98 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCC---CC--hHHHHHHHHHhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPG---RT--DNEIKNYWNSHLSR 114 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg---RT--~~qck~Rw~~~L~~ 114 (418)
+|..+|.++|+ .|..||..|.- -+ +.++|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 47788888873 69999999822 12 36899999998865
No 59
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=60.62 E-value=8.1 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=16.5
Q ss_pred CCCccCCCCHHHHHHH--------HHHHHHhCCCCccccc
Q 014829 10 VGLKKGRWTAEEDDIL--------TKYIQANGEGSWRSLP 41 (418)
Q Consensus 10 p~lkKg~WT~EED~~L--------~~lV~kyG~~~W~~IA 41 (418)
|.-..|-||+++|+.| .+++++|| +..|+
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~ 79 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIE 79 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 4445789999999999 45677787 44554
No 60
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=60.40 E-value=12 Score=41.38 Aligned_cols=56 Identities=16% Similarity=0.391 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhh----------hCCCCChHHHHHHHHHhhhhhhcCCCCC
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIAS----------NMPGRTDNEIKNYWNSHLSRKIHTFWRP 122 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~----------~lpgRT~~qck~Rw~~~L~~~i~~~~~~ 122 (418)
|..||.+|..-...++++||.++..|-. ...-+|..|+|.+|+..+++.-+-.+.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~F~~ 153 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLLFGP 153 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Confidence 6689999999999999999999999932 2334678899999998887765544443
No 61
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=57.06 E-value=16 Score=33.33 Aligned_cols=45 Identities=7% Similarity=-0.060 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhhc
Q 014829 72 AEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKIH 117 (418)
Q Consensus 72 ~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~ 117 (418)
.+-|.+|+.+.++-| ..|+.||+.+ |=|...|+.|++.+.+..+-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 456889999888888 5899999999 99999999999999988763
No 62
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=56.21 E-value=20 Score=29.45 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCC-----CChHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPG-----RTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg-----RT~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++|+ .|..||..|.- ....+++..|.++|.+.
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 47777888773 69999998832 23578899999998763
No 63
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=55.61 E-value=21 Score=34.36 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhcCCChhHHhhhC---CCCChHHHHHHHHHhhh
Q 014829 69 NITAEEEEIIIKLHASLGNRWSLIASNM---PGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~l---pgRT~~qck~Rw~~~L~ 113 (418)
+|++.+|.+|+.+|.. |+.-..|+..+ -.-|-..+..||+.+|-
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 5999999999999865 66677776544 45788999999998874
No 64
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=53.26 E-value=1.1e+02 Score=32.35 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcCCChhHHh-hhCCCCChHHHHHHHHHhhhhhhcCCCCCCC
Q 014829 69 NITAEEEEIIIKLHASLGNRWSLIA-SNMPGRTDNEIKNYWNSHLSRKIHTFWRPSS 124 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA-~~lpgRT~~qck~Rw~~~L~~~i~~~~~~~e 124 (418)
.|+.+|=...-+-++.||+.+..|. ..++.|+-..|-..|+-.-+.-....|....
T Consensus 279 ~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~qqt 335 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQQT 335 (445)
T ss_pred cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhhhc
Confidence 7999999999999999999999996 5689999999999888665555555555333
No 65
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=50.99 E-value=16 Score=40.34 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
...+|+.+|-.+........|...+.|+..+|+|...|+|.+|..-=+
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~ 455 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEK 455 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhh
Confidence 346899999999999999999999999999999999999999875433
No 66
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=50.37 E-value=37 Score=24.42 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 73 EEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
+++..++.++=..|..+..||..| |-|...++.+.+..+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 355556666555667899999999 88999999988877654
No 67
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=48.04 E-value=19 Score=42.95 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=43.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhc-CCChhH
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASL-GNRWSL 91 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~-G~~W~~ 91 (418)
.---|..++|..|+-.|-+||.++|..|-.-- .-|.. =...+...+..+.+-..+-..|+.++..+ +.+|..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp------~L~l~-dKi~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~ 1204 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDP------DLGLT-DKIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPK 1204 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCc------cccch-hhhcccccCCchHHHHHHHHHHHHHHhhcccCCCch
Confidence 34569999999999999999999999994211 11111 01112212334455555666666666555 344544
Q ss_pred Hh
Q 014829 92 IA 93 (418)
Q Consensus 92 IA 93 (418)
.+
T Consensus 1205 ~~ 1206 (1373)
T KOG0384|consen 1205 KL 1206 (1373)
T ss_pred hh
Confidence 43
No 68
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=47.33 E-value=7.5 Score=27.90 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccchhhh
Q 014829 20 EEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWIN 59 (418)
Q Consensus 20 EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~ 59 (418)
+=|.+|+.++++.+...+..||..++. +...|+.|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lgl--S~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGL--SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCc--CHHHHHHHHHH
Confidence 348899999999998899999999995 88889888764
No 69
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=46.34 E-value=12 Score=39.36 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccc-----cccccccccccchhhhhc
Q 014829 10 VGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKN-----AGLLRCGKSCRLRWINYL 61 (418)
Q Consensus 10 p~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~-----l~~~Rs~~QCr~Rw~~~L 61 (418)
..++-..||++|-+.|..++++|.- .|-.||.. ++..||-...++||..+.
T Consensus 126 ~~l~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 126 AHLNDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred HhhccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 3456688999999999999999995 79999987 566699999999998753
No 70
>smart00595 MADF subfamily of SANT domain.
Probab=46.12 E-value=17 Score=29.19 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=21.9
Q ss_pred hhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 89 WSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 89 W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
|..||..| |-+..+|+.+|+++-...
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~y 55 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDRY 55 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 99999999 559999999999875443
No 71
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=45.05 E-value=18 Score=29.39 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------Ccccccccccc----ccccccccchhhhh
Q 014829 16 RWTAEEDDILTKYIQAN---GEG---------SWRSLPKNAGL----LRCGKSCRLRWINY 60 (418)
Q Consensus 16 ~WT~EED~~L~~lV~ky---G~~---------~W~~IA~~l~~----~Rs~~QCr~Rw~~~ 60 (418)
+||++.++.|+.++... |.. .|..|+..|.. ..+..||+.||...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999988655 211 27778776643 24667888887653
No 72
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=42.54 E-value=12 Score=42.16 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhh
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWIN 59 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~ 59 (418)
.-.||+.|-.+..+++..|. ++.-.|++.+.+ ++.+||-+-|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~-KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVKS-KTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhcc-ccHHHHHHHHHH
Confidence 35799999999999999998 799999999999 999999988765
No 73
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=42.47 E-value=22 Score=29.27 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=10.1
Q ss_pred CCCcCCCCCHHHHHHHH
Q 014829 63 ADLKRGNITAEEEEIII 79 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll 79 (418)
|....|-||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55668899999999994
No 74
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=38.38 E-value=15 Score=33.09 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCc
Q 014829 19 AEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLK 66 (418)
Q Consensus 19 ~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ik 66 (418)
.+-|.+|+.+.++.|...|..||+.++ -+...|+.|+.......+-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 357999999999999889999999999 6999999999987665543
No 75
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=37.60 E-value=61 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 77 IIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 77 ~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
.++.+.-..|-.+.+||..+ |.|...++.+.+..++
T Consensus 120 ~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 155 (161)
T TIGR02985 120 KIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALK 155 (161)
T ss_pred HHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33334334577899999999 9999999999887544
No 76
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=37.23 E-value=66 Score=26.58 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+.|.+|+.+..+.| ..+..||+.+ |-+...++.|.+.+.+..+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 46888888888887 5799999999 9999999999999888765
No 77
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=34.52 E-value=46 Score=30.78 Aligned_cols=41 Identities=29% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHH
Q 014829 69 NITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNS 110 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~ 110 (418)
.||.|..++|.+|..+ |..=++||..|.+.|.++|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhhhc
Confidence 4999999999998844 8888999999977999999877653
No 78
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=33.77 E-value=14 Score=33.60 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCc
Q 014829 19 AEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLK 66 (418)
Q Consensus 19 ~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ik 66 (418)
.+-|.+|+.+.++.|.-.|..||+.++ -+...|+.|+++.....+-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 467999999999999889999999999 5999999999988765543
No 79
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=32.90 E-value=37 Score=37.68 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccc---------cccccccchhhhhcc
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL---------RCGKSCRLRWINYLR 62 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~---------Rs~~QCr~Rw~~~L~ 62 (418)
|..||..|......++..+| ++...|-..+..+ ++..|.|.+|++.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 67899999999999999999 6898883322221 566788888887654
No 80
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=32.64 E-value=52 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCChhHHhhhCCCCChHHH
Q 014829 75 EEIIIKLHASLGNRWSLIASNMPGRTDNEI 104 (418)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qc 104 (418)
|..|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678889999999999999999 6555544
No 81
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=31.33 E-value=1.2e+02 Score=31.34 Aligned_cols=88 Identities=18% Similarity=0.279 Sum_probs=62.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCC---ccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHh-c----
Q 014829 14 KGRWTAEEDDILTKYIQANGEGS---WRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHAS-L---- 85 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~---W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~-~---- 85 (418)
-..||..|-..|+++.+...... -..|++.+++ |+..++++ |.+.|+ +..+.+++++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~-Rs~aEI~~-fl~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPG-RSEAEIRD-FLQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccC-cCHHHHHH-HHHHHH------------HHHHHHHHHHhccccc
Confidence 45799999999999998764333 4577788888 99888776 444443 2234444444 1
Q ss_pred -CC------------ChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 86 -GN------------RWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 86 -G~------------~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
|. -|..+|..+.|.-...+-.-|-..|.-.
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ia 129 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLTIA 129 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Confidence 21 2999999999999999888888777543
No 82
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=31.23 E-value=1.1e+02 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=39.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCChhHHhhhC----CCCChHHHHHHHHHhh
Q 014829 66 KRGNITAEEEEIIIKLHASLGNRWSLIASNM----PGRTDNEIKNYWNSHL 112 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~l----pgRT~~qck~Rw~~~L 112 (418)
....-|..|...|..||.+||.++...|.-. --.|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 3457899999999999999999999998643 3589999999887664
No 83
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=29.90 E-value=1.3e+02 Score=31.19 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHhc-CC---ChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 67 RGNITAEEEEIIIKLHASL-GN---RWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~-G~---~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
-..||.-|-..|+++.+.. |. .-..|++.++||+..+|++--+.+-.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 3479999999999888765 54 456889999999999998865544333
No 84
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=28.76 E-value=30 Score=40.94 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAG 45 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~ 45 (418)
-++..||.+||..|+-.+.+||.++|..|-..+.
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~ 957 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFR 957 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3455699999999999999999999999965543
No 85
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=28.21 E-value=95 Score=27.14 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
+-|.+|+++.++-+ ..+..||+.+ |-|...|++|-+.+.+..+-.
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI~ 53 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVIK 53 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCcee
Confidence 45788888888888 5799999999 999999999999999888643
No 86
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=28.16 E-value=78 Score=26.11 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCChhHHhhhCCCCChHHHH
Q 014829 75 EEIIIKLHASLGNRWSLIASNMPGRTDNEIK 105 (418)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck 105 (418)
|..|..+....|..|..+|..| |=+...|.
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~ 33 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEIN 33 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHH
Confidence 5678888899999999999999 66665443
No 87
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=25.65 E-value=1.1e+02 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 81 LHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 81 lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
++-..|..+..||+.+ |=+...++.+.+..+++
T Consensus 121 ~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 121 LRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred hHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334577899999999 77999999888876544
No 88
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=24.51 E-value=62 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.6
Q ss_pred hhHHhhhCC-CCChHHHHHHHHHhhhhh
Q 014829 89 WSLIASNMP-GRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 89 W~~IA~~lp-gRT~~qck~Rw~~~L~~~ 115 (418)
|..||..|. .-+..+|+.||+++-...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~y 56 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDRY 56 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 999999994 367889999999866544
No 89
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=24.43 E-value=37 Score=36.52 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=39.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhh
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWIN 59 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~ 59 (418)
.+..||.||--++.++.+.|| .+..+|-+.|+. |+-...++-|..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP~-rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFG-KDFHKIRQALPH-RSLASLVQYYYS 230 (534)
T ss_pred CcccchHHHHHHHHHHHHHhc-ccHHHHHHHccC-ccHHHHHHHHHH
Confidence 456799999999999999999 699999999998 988888776654
No 90
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=22.76 E-value=79 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCChhHHhhhCCCCChHHHH
Q 014829 75 EEIIIKLHASLGNRWSLIASNMPGRTDNEIK 105 (418)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck 105 (418)
|..|..+.+..|..|..+|+.| |=+..+|.
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI~ 33 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDID 33 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 4567788889999999999999 55555443
No 91
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=21.58 E-value=1.9e+02 Score=25.12 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhc------------CC-C------------------hhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 69 NITAEEEEIIIKLHASL------------GN-R------------------WSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~------------G~-~------------------W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
+||++||..|...|.+| |. . ....+...|.+|...=|.||++.+...
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv~~~ 78 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFVSEY 78 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHHHHc
Confidence 48999999999888653 11 1 566778889999999999999887764
No 92
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=20.28 E-value=1.7e+02 Score=25.71 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=22.8
Q ss_pred hcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 84 SLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 84 ~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
..|-....||..| |-+...++.+.+..++
T Consensus 142 ~~~~s~~eIA~~l-gis~~tV~~~l~ra~~ 170 (182)
T PRK09652 142 IEGLSYEEIAEIM-GCPIGTVRSRIFRARE 170 (182)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3567899999999 8899999887664433
Done!