Query 014829
Match_columns 418
No_of_seqs 266 out of 1509
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-36 7.3E-41 272.6 2.6 152 11-163 3-156 (159)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.5E-32 5.2E-37 231.3 9.6 105 11-116 1-105 (105)
3 3zqc_A MYB3; transcription-DNA 100.0 3.6E-32 1.2E-36 238.2 12.1 104 14-118 2-105 (131)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 5E-32 1.7E-36 229.6 9.0 104 14-118 1-104 (107)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 8.2E-32 2.8E-36 234.8 9.4 108 8-116 21-128 (128)
6 3osg_A MYB21; transcription-DN 100.0 2.5E-31 8.6E-36 231.6 9.6 107 7-115 4-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.2E-29 4.2E-34 228.4 8.1 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 6.5E-28 2.2E-32 210.1 2.5 123 40-163 1-125 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.5E-21 1.2E-25 151.3 1.9 67 8-75 3-69 (70)
10 1gv2_A C-MYB, MYB proto-oncoge 99.8 3.2E-20 1.1E-24 156.0 0.9 98 64-161 1-100 (105)
11 3osg_A MYB21; transcription-DN 99.8 1.6E-19 5.3E-24 157.1 2.6 100 62-161 6-106 (126)
12 3zqc_A MYB3; transcription-DNA 99.7 2.2E-19 7.6E-24 157.0 1.7 98 67-164 2-101 (131)
13 2k9n_A MYB24; R2R3 domain, DNA 99.7 3E-19 1E-23 151.1 0.2 93 67-159 1-95 (107)
14 1ign_A Protein (RAP1); RAP1,ye 99.7 1.8E-17 6.2E-22 157.7 6.8 106 9-115 3-200 (246)
15 2dim_A Cell division cycle 5-l 99.7 9.8E-17 3.3E-21 125.9 7.4 64 62-125 4-69 (70)
16 2llk_A Cyclin-D-binding MYB-li 99.7 4.7E-17 1.6E-21 129.5 5.2 59 54-113 10-68 (73)
17 2din_A Cell division cycle 5-l 99.7 1.3E-16 4.3E-21 123.9 6.6 59 60-119 2-60 (66)
18 2d9a_A B-MYB, MYB-related prot 99.6 5.8E-17 2E-21 123.5 3.5 57 9-66 3-59 (60)
19 2d9a_A B-MYB, MYB-related prot 99.6 2.5E-16 8.5E-21 120.0 6.5 56 62-117 3-59 (60)
20 2cu7_A KIAA1915 protein; nucle 99.6 6.4E-16 2.2E-20 122.1 7.8 59 61-119 3-61 (72)
21 1gvd_A MYB proto-oncogene prot 99.6 1.2E-16 4E-21 118.4 3.1 52 12-64 1-52 (52)
22 2juh_A Telomere binding protei 99.6 1.3E-16 4.6E-21 138.2 2.8 82 9-91 12-103 (121)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 1.9E-16 6.4E-21 117.2 2.5 52 12-64 1-52 (52)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 9.4E-16 3.2E-20 113.4 6.1 50 65-114 1-51 (52)
25 1ity_A TRF1; helix-turn-helix, 99.6 3.6E-16 1.2E-20 122.4 3.5 62 9-71 5-68 (69)
26 1gvd_A MYB proto-oncogene prot 99.6 1.3E-15 4.6E-20 112.7 6.2 50 65-114 1-51 (52)
27 2roh_A RTBP1, telomere binding 99.6 8.8E-16 3E-20 133.2 4.8 78 10-88 27-114 (122)
28 1ity_A TRF1; helix-turn-helix, 99.6 7.4E-15 2.5E-19 114.9 7.7 58 61-118 4-64 (69)
29 1x41_A Transcriptional adaptor 99.5 6.3E-15 2.2E-19 112.5 6.0 54 62-115 3-57 (60)
30 1x41_A Transcriptional adaptor 99.5 1.9E-15 6.5E-20 115.4 3.1 55 9-64 3-57 (60)
31 3sjm_A Telomeric repeat-bindin 99.5 1.7E-15 5.7E-20 117.5 2.3 55 11-66 8-64 (64)
32 1w0t_A Telomeric repeat bindin 99.5 1.3E-14 4.6E-19 107.9 6.3 49 66-114 1-52 (53)
33 2din_A Cell division cycle 5-l 99.5 2E-15 6.9E-20 117.1 0.6 60 7-69 2-61 (66)
34 3sjm_A Telomeric repeat-bindin 99.5 2.6E-14 9E-19 110.8 6.4 52 65-116 9-63 (64)
35 2yum_A ZZZ3 protein, zinc fing 99.5 2.6E-14 9E-19 113.4 6.1 57 62-118 3-65 (75)
36 1w0t_A Telomeric repeat bindin 99.5 7.4E-15 2.5E-19 109.3 2.2 49 13-62 1-51 (53)
37 2yum_A ZZZ3 protein, zinc fing 99.5 5.8E-15 2E-19 117.2 1.6 60 9-69 3-67 (75)
38 2elk_A SPCC24B10.08C protein; 99.5 5.8E-14 2E-18 106.6 6.3 50 63-112 5-56 (58)
39 2elk_A SPCC24B10.08C protein; 99.5 1.6E-14 5.5E-19 109.6 2.8 51 10-61 5-56 (58)
40 2cu7_A KIAA1915 protein; nucle 99.4 4.3E-14 1.5E-18 111.5 1.9 58 8-67 3-60 (72)
41 2ltp_A Nuclear receptor corepr 99.1 2.4E-14 8.3E-19 117.7 0.0 56 60-115 9-64 (89)
42 1ign_A Protein (RAP1); RAP1,ye 99.4 5.5E-13 1.9E-17 127.0 6.7 82 63-148 4-91 (246)
43 2llk_A Cyclin-D-binding MYB-li 99.3 2.7E-13 9.3E-18 107.8 3.1 60 3-66 12-71 (73)
44 2ckx_A NGTRF1, telomere bindin 99.3 1.1E-12 3.9E-17 106.6 4.8 69 15-84 1-79 (83)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.9E-12 6.4E-17 103.0 5.6 52 63-114 14-69 (73)
46 2aje_A Telomere repeat-binding 99.3 1.4E-12 4.6E-17 110.5 4.1 77 9-86 8-94 (105)
47 2yus_A SWI/SNF-related matrix- 99.3 1.1E-12 3.9E-17 105.6 2.9 53 6-60 10-62 (79)
48 2yus_A SWI/SNF-related matrix- 99.3 3.1E-12 1E-16 103.1 5.0 48 64-111 15-62 (79)
49 2juh_A Telomere binding protei 99.2 2.2E-12 7.4E-17 111.8 2.5 59 61-119 11-79 (121)
50 2ltp_A Nuclear receptor corepr 98.8 1.7E-12 5.7E-17 106.7 0.0 54 8-63 10-63 (89)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.2 3.8E-12 1.3E-16 101.2 1.7 55 7-62 11-68 (73)
52 2ckx_A NGTRF1, telomere bindin 99.1 4E-11 1.4E-15 97.5 5.9 49 68-116 1-54 (83)
53 2aje_A Telomere repeat-binding 99.1 1.1E-10 3.6E-15 98.9 7.9 54 63-116 9-67 (105)
54 1x58_A Hypothetical protein 49 99.1 8.8E-11 3E-15 90.3 6.0 49 66-114 7-58 (62)
55 2roh_A RTBP1, telomere binding 99.1 4E-11 1.4E-15 104.0 4.4 51 63-113 27-82 (122)
56 2cjj_A Radialis; plant develop 99.1 1.6E-10 5.5E-15 95.8 5.9 50 66-115 7-60 (93)
57 3hm5_A DNA methyltransferase 1 98.9 2.1E-09 7.2E-14 89.0 6.2 66 50-119 17-87 (93)
58 2cjj_A Radialis; plant develop 98.8 5.3E-10 1.8E-14 92.7 1.1 48 13-61 7-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.8 5.3E-09 1.8E-13 79.9 6.1 47 67-113 12-58 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.6 2.7E-08 9.2E-13 78.7 5.5 50 64-114 5-58 (72)
61 1x58_A Hypothetical protein 49 98.5 2.6E-08 8.8E-13 76.6 2.4 49 12-62 6-57 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.5 3.7E-08 1.3E-12 75.2 2.7 51 9-61 7-57 (61)
63 2iw5_B Protein corest, REST co 98.5 1.3E-07 4.4E-12 89.5 6.1 49 66-114 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.4 7.7E-08 2.6E-12 76.1 1.2 52 10-63 4-58 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.3 9.5E-07 3.2E-11 70.1 6.8 49 67-115 8-60 (73)
66 2xag_B REST corepressor 1; ami 98.3 4.1E-07 1.4E-11 94.7 5.3 47 68-114 381-427 (482)
67 1fex_A TRF2-interacting telome 98.3 8.6E-07 2.9E-11 67.4 5.2 47 67-113 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.2 4E-07 1.4E-11 72.2 1.4 48 14-62 8-58 (73)
69 1fex_A TRF2-interacting telome 98.1 4.9E-07 1.7E-11 68.8 1.3 48 14-62 2-58 (59)
70 2iw5_B Protein corest, REST co 98.0 1.6E-06 5.4E-11 82.1 2.7 49 12-62 131-179 (235)
71 1ofc_X ISWI protein; nuclear p 97.9 1.4E-05 4.7E-10 79.0 6.8 101 15-116 111-277 (304)
72 2yqk_A Arginine-glutamic acid 97.9 3.1E-05 1E-09 59.4 6.6 50 62-111 4-54 (63)
73 1ug2_A 2610100B20RIK gene prod 97.8 1.9E-05 6.7E-10 64.7 5.2 49 69-117 35-86 (95)
74 4iej_A DNA methyltransferase 1 97.8 3.9E-05 1.3E-09 63.4 6.2 60 55-118 22-86 (93)
75 4eef_G F-HB80.4, designed hema 97.7 9.8E-06 3.3E-10 64.1 1.7 43 67-109 20-66 (74)
76 2lr8_A CAsp8-associated protei 96.9 5.4E-06 1.8E-10 64.6 0.0 45 69-114 16-63 (70)
77 4eef_G F-HB80.4, designed hema 97.6 9.5E-06 3.2E-10 64.2 0.8 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.4 7.5E-05 2.6E-09 57.2 2.7 49 9-59 4-53 (63)
79 4a69_C Nuclear receptor corepr 97.2 0.00045 1.5E-08 57.0 5.7 45 67-111 43-87 (94)
80 2crg_A Metastasis associated p 97.2 0.00058 2E-08 53.3 6.0 45 67-111 8-53 (70)
81 2xag_B REST corepressor 1; ami 97.0 0.00022 7.4E-09 74.4 2.7 46 13-60 379-424 (482)
82 3hm5_A DNA methyltransferase 1 97.0 0.0002 6.9E-09 59.2 2.0 50 12-62 28-81 (93)
83 2ebi_A DNA binding protein GT- 96.7 0.001 3.6E-08 53.3 3.8 50 67-116 4-67 (86)
84 4a69_C Nuclear receptor corepr 96.5 0.00096 3.3E-08 55.0 1.9 44 14-59 43-86 (94)
85 2crg_A Metastasis associated p 96.3 0.0013 4.5E-08 51.3 1.9 45 13-59 7-52 (70)
86 2y9y_A Imitation switch protei 96.3 0.0066 2.3E-07 61.4 7.4 103 15-118 124-295 (374)
87 2ebi_A DNA binding protein GT- 96.2 0.00044 1.5E-08 55.6 -1.7 49 13-61 3-63 (86)
88 1ug2_A 2610100B20RIK gene prod 96.1 0.0014 4.7E-08 53.8 1.2 45 16-61 35-81 (95)
89 2lr8_A CAsp8-associated protei 95.1 0.00089 3E-08 52.2 0.0 46 15-62 15-62 (70)
90 4b4c_A Chromodomain-helicase-D 96.0 0.0089 3.1E-07 55.0 6.3 45 69-113 136-195 (211)
91 4iej_A DNA methyltransferase 1 93.5 0.03 1E-06 46.1 2.1 49 12-61 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 93.2 0.17 5.9E-06 38.9 5.9 47 66-112 6-57 (64)
93 4b4c_A Chromodomain-helicase-D 93.0 0.072 2.5E-06 48.9 4.2 38 5-42 125-162 (211)
94 1ofc_X ISWI protein; nuclear p 88.9 0.57 1.9E-05 46.2 6.1 48 67-114 110-158 (304)
95 2xb0_X Chromo domain-containin 83.2 0.88 3E-05 44.1 4.1 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 68.8 2.8 9.5E-05 32.1 2.5 49 12-60 5-56 (64)
97 2xb0_X Chromo domain-containin 66.0 9.7 0.00033 36.8 6.3 50 67-116 3-57 (270)
98 2li6_A SWI/SNF chromatin-remod 63.3 5.6 0.00019 33.3 3.6 39 77-115 53-99 (116)
99 2jrz_A Histone demethylase jar 59.9 10 0.00035 31.8 4.6 39 77-115 44-94 (117)
100 2lm1_A Lysine-specific demethy 58.8 12 0.00041 30.6 4.8 39 77-115 48-98 (107)
101 1kkx_A Transcription regulator 55.4 8.1 0.00028 32.8 3.3 39 78-116 53-99 (123)
102 2eqy_A RBP2 like, jumonji, at 54.5 14 0.00048 31.2 4.6 39 77-115 46-96 (122)
103 2cxy_A BAF250B subunit, HBAF25 53.9 14 0.00049 31.2 4.6 39 77-115 55-105 (125)
104 2rq5_A Protein jumonji; develo 52.9 4.7 0.00016 34.3 1.3 57 24-83 46-113 (121)
105 2rq5_A Protein jumonji; develo 49.6 17 0.00059 30.8 4.4 79 11-115 4-97 (121)
106 1c20_A DEAD ringer protein; DN 47.8 21 0.00071 30.2 4.6 40 76-115 55-107 (128)
107 2jxj_A Histone demethylase jar 47.0 10 0.00035 30.4 2.4 39 77-115 40-90 (96)
108 2li6_A SWI/SNF chromatin-remod 45.6 5.4 0.00019 33.4 0.6 39 24-63 53-98 (116)
109 2kk0_A AT-rich interactive dom 43.7 24 0.00083 30.6 4.5 40 77-116 68-120 (145)
110 2y9y_A Imitation switch protei 43.4 30 0.001 34.9 5.7 46 68-113 124-171 (374)
111 2o8x_A Probable RNA polymerase 43.3 30 0.001 24.7 4.3 41 73-114 18-58 (70)
112 1ig6_A MRF-2, modulator recogn 41.0 16 0.00055 29.8 2.8 39 77-115 37-88 (107)
113 1ku3_A Sigma factor SIGA; heli 38.7 38 0.0013 24.9 4.4 40 74-114 14-57 (73)
114 1ig6_A MRF-2, modulator recogn 38.2 8.9 0.00031 31.4 0.8 41 23-63 36-87 (107)
115 2jrz_A Histone demethylase jar 36.5 7.8 0.00027 32.5 0.2 40 24-63 44-93 (117)
116 2p7v_B Sigma-70, RNA polymeras 35.8 40 0.0014 24.4 4.0 41 74-115 9-53 (68)
117 3i4p_A Transcriptional regulat 35.4 59 0.002 27.9 5.7 45 73-118 3-48 (162)
118 1c20_A DEAD ringer protein; DN 33.9 9.2 0.00031 32.5 0.2 40 24-63 56-106 (128)
119 2cxy_A BAF250B subunit, HBAF25 31.8 10 0.00035 32.1 0.1 40 24-63 55-104 (125)
120 2lm1_A Lysine-specific demethy 29.7 11 0.00037 30.8 -0.1 41 23-63 47-97 (107)
121 2eqy_A RBP2 like, jumonji, at 29.3 13 0.00043 31.4 0.3 41 23-63 45-95 (122)
122 3hug_A RNA polymerase sigma fa 28.4 65 0.0022 24.7 4.3 40 74-114 41-80 (92)
123 2kk0_A AT-rich interactive dom 25.5 36 0.0012 29.5 2.5 53 24-76 68-133 (145)
124 2dbb_A Putative HTH-type trans 23.7 1.2E+02 0.004 25.2 5.4 43 73-116 9-52 (151)
125 1x3u_A Transcriptional regulat 23.4 1.1E+02 0.0039 22.1 4.8 42 70-114 17-58 (79)
126 2e1c_A Putative HTH-type trans 22.8 1.4E+02 0.0048 25.8 5.9 44 73-117 27-71 (171)
127 3cz6_A DNA-binding protein RAP 21.8 54 0.0018 29.5 2.9 24 10-33 110-141 (168)
128 3cz6_A DNA-binding protein RAP 21.6 64 0.0022 29.0 3.3 24 63-86 110-141 (168)
129 1tty_A Sigma-A, RNA polymerase 21.5 1.1E+02 0.0037 23.3 4.4 40 74-114 22-65 (87)
130 3ulq_B Transcriptional regulat 21.2 1.5E+02 0.0051 23.0 5.2 45 67-114 27-71 (90)
131 3c57_A Two component transcrip 20.6 1.3E+02 0.0043 23.4 4.7 43 69-114 27-69 (95)
132 2k27_A Paired box protein PAX- 20.6 3.6E+02 0.012 22.3 8.3 95 14-113 23-137 (159)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=2.1e-36 Score=272.64 Aligned_cols=152 Identities=27% Similarity=0.509 Sum_probs=106.0
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCC-Ch
Q 014829 11 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGN-RW 89 (418)
Q Consensus 11 ~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~-~W 89 (418)
++++++||+|||++|+++|++||.++|..||..|++ |++.||++||.++|+|.+++++||++||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 478999999999999999999998899999999998 9999999999999999999999999999999999999995 79
Q ss_pred hHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCCcCcCCCCCCChhhhhcccCCCCC
Q 014829 90 SLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTGVASDRKAGKKIGSAIMKNKSHSK 163 (418)
Q Consensus 90 ~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~~iak~~~GRtS~s~knr~k~~~~ 163 (418)
..||.+|||||+.||++||+++|++.+ +..|+++++..+...+...|.+|..|++.++||+.+.++||.+...+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999988 67899999999999999999999999999999999999999765544
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=1.5e-32 Score=231.33 Aligned_cols=105 Identities=48% Similarity=0.819 Sum_probs=99.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChh
Q 014829 11 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWS 90 (418)
Q Consensus 11 ~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~ 90 (418)
.|++|+||+|||++|+++|++||.++|..||+.|++ |++.||++||.++|+|.+++++||++||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999998 9999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 91 LIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 91 ~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
.||++|||||+.||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=3.6e-32 Score=238.20 Aligned_cols=104 Identities=42% Similarity=0.769 Sum_probs=101.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHh
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIA 93 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA 93 (418)
||+||+|||++|+++|++||.++|..||..|++ |++.||++||.++|+|.+++++||++||.+|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 94 SNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 94 ~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
.+|||||++||++||+++|++.+..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998864
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=5e-32 Score=229.61 Aligned_cols=104 Identities=27% Similarity=0.503 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHh
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIA 93 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA 93 (418)
||+||+|||++|+++|++||..+|..||..|++ |+++||++||.++|+|.+++++||++||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 94 SNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 94 ~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
++|||||++||++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886643
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=8.2e-32 Score=234.77 Aligned_cols=108 Identities=44% Similarity=0.782 Sum_probs=102.8
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCC
Q 014829 8 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGN 87 (418)
Q Consensus 8 ~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~ 87 (418)
.+|++++|+||+|||++|+++|++||.++|..||..|++ |++.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 459999999999999999999999998889999999998 9999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 88 RWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 88 ~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+|+.||++|||||+.||++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998753
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=2.5e-31 Score=231.57 Aligned_cols=107 Identities=32% Similarity=0.630 Sum_probs=102.1
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcC
Q 014829 7 CEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLG 86 (418)
Q Consensus 7 c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G 86 (418)
..++.++||+||+|||++|+++|++||. +|..||..|++ |+++||++||.++|+|.+++++||++||++|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999996 99999999998 999999999999999999999999999999999999999
Q ss_pred CChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 87 NRWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 87 ~~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
.+|..||++|||||+.||++||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.2e-29 Score=228.45 Aligned_cols=108 Identities=46% Similarity=0.784 Sum_probs=103.1
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCC
Q 014829 8 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGN 87 (418)
Q Consensus 8 ~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~ 87 (418)
.+|.+++|+||+|||++|+++|++||..+|..||..|++ |++.||+.||.++|+|.+++++||++||.+|+++|.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 459999999999999999999999998789999999998 9999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 88 RWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 88 ~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+|+.||++|||||++||++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998754
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.94 E-value=6.5e-28 Score=210.11 Aligned_cols=123 Identities=21% Similarity=0.392 Sum_probs=96.1
Q ss_pred cccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhhCCCCChHHHHHHHHHhhhhhh-c
Q 014829 40 LPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGN-RWSLIASNMPGRTDNEIKNYWNSHLSRKI-H 117 (418)
Q Consensus 40 IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~ 117 (418)
||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|+|.+ +
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7889998 9999999999999999999999999999999999999995 79999999999999999999999999988 7
Q ss_pred CCCCCCCCCCCCcccccccCCCCcCcCCCCCCChhhhhcccCCCCC
Q 014829 118 TFWRPSSEKTLPVKVDVAAAGTGVASDRKAGKKIGSAIMKNKSHSK 163 (418)
Q Consensus 118 ~~~~~~ed~~l~~~~~~~g~k~~~iak~~~GRtS~s~knr~k~~~~ 163 (418)
..|+++++..+...+...|..|..|++.++||+.+.++++.+...+
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999765544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-21 Score=151.34 Aligned_cols=67 Identities=22% Similarity=0.522 Sum_probs=64.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHH
Q 014829 8 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEE 75 (418)
Q Consensus 8 ~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED 75 (418)
..|.+++|+||+|||++|+++|++||.++|..||..|++ |+++||++||.++|+|.+++++||++||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 358899999999999999999999998899999999998 9999999999999999999999999997
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.77 E-value=3.2e-20 Score=156.02 Aligned_cols=98 Identities=23% Similarity=0.419 Sum_probs=91.5
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCCc
Q 014829 64 DLKRGNITAEEEEIIIKLHASLGN-RWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTGV 141 (418)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~~ 141 (418)
.+++++||++||++|+++|.+||. +|..||.+|||||+.||+.||.++|.|.+ +..|+++++..+...+...|..|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 368999999999999999999996 79999999999999999999999999988 7789999999999999999999999
Q ss_pred CcCCCCCCChhhhhcccCCC
Q 014829 142 ASDRKAGKKIGSAIMKNKSH 161 (418)
Q Consensus 142 iak~~~GRtS~s~knr~k~~ 161 (418)
|++.++||+.+.+++|....
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999996543
No 11
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.75 E-value=1.6e-19 Score=157.07 Aligned_cols=100 Identities=21% Similarity=0.353 Sum_probs=93.3
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCC
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTG 140 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~ 140 (418)
.+..++++||+|||++|+++|.+||.+|..||..|||||+.||+.||+++|.+.+ +..|+++++..+...+...|.+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 4567899999999999999999999999999999999999999999999999998 678999999999999999999999
Q ss_pred cCcCCCCCCChhhhhcccCCC
Q 014829 141 VASDRKAGKKIGSAIMKNKSH 161 (418)
Q Consensus 141 ~iak~~~GRtS~s~knr~k~~ 161 (418)
.|++.++||+.+.+++|....
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999999996443
No 12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.74 E-value=2.2e-19 Score=156.96 Aligned_cols=98 Identities=20% Similarity=0.369 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCCcCcC
Q 014829 67 RGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTGVASD 144 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~~iak 144 (418)
+|+||+|||++|+++|.+|| .+|..||.+|||||+.||+.||.++|.+.+ +..|+++++..+...+...|.+|..|++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 78999999999999999999 789999999999999999999999999998 6789999999999999999999999999
Q ss_pred CCCCCChhhhhcccCCCCCC
Q 014829 145 RKAGKKIGSAIMKNKSHSKK 164 (418)
Q Consensus 145 ~~~GRtS~s~knr~k~~~~~ 164 (418)
.++||+.+.+++|...+.++
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGG
T ss_pred HcCCCCHHHHHHHHHHHHHH
Confidence 99999999999996555444
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.73 E-value=3e-19 Score=151.06 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=88.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-ChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCCCCCCcccccccCCCCcCcC
Q 014829 67 RGNITAEEEEIIIKLHASLGN-RWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTLPVKVDVAAAGTGVASD 144 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed~~l~~~~~~~g~k~~~iak 144 (418)
+++||++||++|+++|.+||. +|..||..|||||+.||+.||.++|.|.+ +.+|+++++..+...+...|..|..|++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 89999999999999999999999999988 7889999999999999999999999999
Q ss_pred CCCCCChhhhhcccC
Q 014829 145 RKAGKKIGSAIMKNK 159 (418)
Q Consensus 145 ~~~GRtS~s~knr~k 159 (418)
.++||+.+.+++|..
T Consensus 81 ~l~gRt~~~~k~rw~ 95 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWM 95 (107)
T ss_dssp HHSSSCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 999999999999853
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.69 E-value=1.8e-17 Score=157.65 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=92.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccccccccchhhhhccCCCc-----------------
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGS-----WRSLPKNAGLLRCGKSCRLRWINYLRADLK----------------- 66 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~-----W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ik----------------- 66 (418)
.+.++|++||+|||++|+++|.+||..+ |..||+.|++ ||+.|||.||+.+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678999999999999999999998532 9999999998 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-c------------------------------------------------
Q 014829 67 ------------RGNITAEEEEIIIKLHAS-L------------------------------------------------ 85 (418)
Q Consensus 67 ------------kg~WT~EED~~Ll~lv~~-~------------------------------------------------ 85 (418)
+.+||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999999876 2
Q ss_pred -----CC----ChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 86 -----GN----RWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 86 -----G~----~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
|. .|..||+.+|+||..++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999998775
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.8e-17 Score=125.93 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=58.9
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhh-cCCCCCCCC
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSE 125 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i-~~~~~~~ed 125 (418)
.|.+++++||++||++|+++|.+|| .+|..||.+|+|||+.|||+||+++|+|.+ +.+|++++|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 799999999999999999999999999998 566777665
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-17 Score=129.49 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=47.7
Q ss_pred cchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 54 RLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 54 r~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
.-||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 9999999999996543
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=123.95 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=56.4
Q ss_pred hccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhhhcCC
Q 014829 60 YLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTF 119 (418)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~~ 119 (418)
+|+|.+++++||+|||.+|+++|.+||.+|..||. |+|||++|||+||+++|++.++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999998653
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=5.8e-17 Score=123.49 Aligned_cols=57 Identities=26% Similarity=0.539 Sum_probs=54.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCc
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLK 66 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ik 66 (418)
.|.+++++||+|||++|+++|++||.++|..||..|++ |++.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999998899999999998 9999999999999999875
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.5e-16 Score=119.97 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=53.1
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhhc
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKIH 117 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~ 117 (418)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999999764
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.62 E-value=6.4e-16 Score=122.08 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=56.0
Q ss_pred ccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhhhcCC
Q 014829 61 LRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTF 119 (418)
Q Consensus 61 L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~~ 119 (418)
++|.+++++||+|||++|+++|.+||.+|..||.+|||||++|||+||+++|++.++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999988763
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=1.2e-16 Score=118.44 Aligned_cols=52 Identities=44% Similarity=0.765 Sum_probs=49.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCC
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ 64 (418)
|+||+||+|||++|+++|++||..+|..||..|++ |++.||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 68999999999999999999998789999999998 99999999999999984
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.61 E-value=1.3e-16 Score=138.16 Aligned_cols=82 Identities=16% Similarity=0.303 Sum_probs=77.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccchhhhhcc-----CCCcCC-CCCHHHHHHH
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNA----GLLRCGKSCRLRWINYLR-----ADLKRG-NITAEEEEII 78 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l----~~~Rs~~QCr~Rw~~~L~-----p~ikkg-~WT~EED~~L 78 (418)
++..++++||+|||+.|+++|++||.++|..|+..+ ++ ||..||++||+++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467899999999999999999999988999999985 55 999999999999998 999999 9999999999
Q ss_pred HHHHHhcCCChhH
Q 014829 79 IKLHASLGNRWSL 91 (418)
Q Consensus 79 l~lv~~~G~~W~~ 91 (418)
+.++..+|++|..
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999986
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=1.9e-16 Score=117.23 Aligned_cols=52 Identities=35% Similarity=0.716 Sum_probs=48.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCC
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ 64 (418)
|++++||+|||++|+++|++||.++|..||+.|++ |++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 58999999999999999999997799999999998 99999999999999984
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=9.4e-16 Score=113.44 Aligned_cols=50 Identities=34% Similarity=0.582 Sum_probs=46.8
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 65 LKRGNITAEEEEIIIKLHASLGN-RWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
+++++||+|||.+|+++|.+||. +|..||.+|||||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999999987
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=3.6e-16 Score=122.45 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=58.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccccccccchhhhhccCCCcCCCCC
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAG--LLRCGKSCRLRWINYLRADLKRGNIT 71 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~--~~Rs~~QCr~Rw~~~L~p~ikkg~WT 71 (418)
+|..++++||+|||++|+++|++||.++|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5778999999999999999999999889999999999 7 999999999999999999988653
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.3e-15 Score=112.70 Aligned_cols=50 Identities=38% Similarity=0.737 Sum_probs=47.7
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 65 LKRGNITAEEEEIIIKLHASLGN-RWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
+++++||+|||.+|+++|.+||. +|..||.+|+|||+.|||+||+++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 799999999999999999999999987
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.58 E-value=8.8e-16 Score=133.23 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=72.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccchhhhhc-----cCCCcCCCCCHHH-HHHHH
Q 014829 10 VGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNA----GLLRCGKSCRLRWINYL-----RADLKRGNITAEE-EEIII 79 (418)
Q Consensus 10 p~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l----~~~Rs~~QCr~Rw~~~L-----~p~ikkg~WT~EE-D~~Ll 79 (418)
...++++||+|||+.|+++|++||.++|..|+..+ ++ ||..||++||++++ +|.++++.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45788999999999999999999988999999875 45 99999999999999 8999999999999 89999
Q ss_pred HHHHhcCCC
Q 014829 80 KLHASLGNR 88 (418)
Q Consensus 80 ~lv~~~G~~ 88 (418)
.++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999964
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=7.4e-15 Score=114.94 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=54.0
Q ss_pred ccCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCC--CCChHHHHHHHHHhhhhhhcC
Q 014829 61 LRADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMP--GRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 61 L~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~L~~~i~~ 118 (418)
..+..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.|||+||+++|++.+.+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 45677899999999999999999999 69999999999 999999999999999998854
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=6.3e-15 Score=112.49 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=50.4
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
.+.+.+++||++||++|+++|.+|| ++|..||++||+||+.|||+||+++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3678899999999999999999999 79999999999999999999999998753
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.9e-15 Score=115.40 Aligned_cols=55 Identities=18% Similarity=0.446 Sum_probs=52.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCC
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ 64 (418)
.+.+++++||+|||++|+++|++||.++|..||+.|++ ||+.||+.||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 46899999999999999999999998899999999998 99999999999999865
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1.7e-15 Score=117.53 Aligned_cols=55 Identities=31% Similarity=0.523 Sum_probs=49.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccccccccchhhhhccCCCc
Q 014829 11 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAG--LLRCGKSCRLRWINYLRADLK 66 (418)
Q Consensus 11 ~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~--~~Rs~~QCr~Rw~~~L~p~ik 66 (418)
..+|++||+|||++|+++|++||.++|..||+.++ + |++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 35899999999999999999999889999999876 5 9999999999999998763
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=1.3e-14 Score=107.86 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=46.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCC--CCChHHHHHHHHHhhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLG-NRWSLIASNMP--GRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~L~~ 114 (418)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 69999999999 99999999999999874
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2e-15 Score=117.10 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=55.0
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCC
Q 014829 7 CEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGN 69 (418)
Q Consensus 7 c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~ 69 (418)
+.+|.+++++||+|||++|+++|+.||. +|..||+ +++ ||+.||+.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 3579999999999999999999999995 9999999 777 9999999999999999877653
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.49 E-value=2.6e-14 Score=110.78 Aligned_cols=52 Identities=29% Similarity=0.441 Sum_probs=47.7
Q ss_pred CcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCC--CCChHHHHHHHHHhhhhhh
Q 014829 65 LKRGNITAEEEEIIIKLHASLG-NRWSLIASNMP--GRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~L~~~i 116 (418)
.++++||+|||++|+++|.+|| .+|..||+.++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 59999999865 9999999999999999865
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=113.37 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=53.3
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcC------CChhHHhhhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLG------NRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G------~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
+|.+.+++||+|||.+|+++|.+|| .+|..||.+|+|||+.||++||+++|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 68999999999999999999999999987754
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.48 E-value=7.4e-15 Score=109.27 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccccccccchhhhhcc
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAG--LLRCGKSCRLRWINYLR 62 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~--~~Rs~~QCr~Rw~~~L~ 62 (418)
++++||+|||++|+++|++||.++|..||..++ + ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 7 999999999999875
No 37
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.8e-15 Score=117.16 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=56.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC-----CCccccccccccccccccccchhhhhccCCCcCCC
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGE-----GSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGN 69 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~-----~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~ 69 (418)
+|.+++++||+|||++|+++|++||. .+|..||+.|++ ||..||+.||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999996 689999999998 9999999999999998877764
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=5.8e-14 Score=106.56 Aligned_cols=50 Identities=26% Similarity=0.372 Sum_probs=46.7
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcC-CChhHHhhhCC-CCChHHHHHHHHHhh
Q 014829 63 ADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMP-GRTDNEIKNYWNSHL 112 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw~~~L 112 (418)
..+.+++||++||++|+++|.+|| .+|..||++|+ +||+.|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999999875
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.6e-14 Score=109.64 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=47.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc-cccccccccchhhhhc
Q 014829 10 VGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAG-LLRCGKSCRLRWINYL 61 (418)
Q Consensus 10 p~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~-~~Rs~~QCr~Rw~~~L 61 (418)
..+.+++||++||++|+++|++||.++|..||+.|+ + ||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence 457789999999999999999999889999999999 6 99999999999875
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=4.3e-14 Score=111.55 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=54.1
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcC
Q 014829 8 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKR 67 (418)
Q Consensus 8 ~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikk 67 (418)
..|.+++++||+|||++|+++|++||. +|..||..|++ ||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999995 99999999999 99999999999999877665
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.10 E-value=2.4e-14 Score=117.69 Aligned_cols=56 Identities=27% Similarity=0.245 Sum_probs=53.3
Q ss_pred hccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 60 YLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
.+.|.+++++||++||.+|+++|.+||++|..||.+|||||++||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999999874
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.36 E-value=5.5e-13 Score=126.97 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=66.9
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCCC------hhHHhhhCCCCChHHHHHHHHHhhhhhhcCCCCCCCCCCCCccccccc
Q 014829 63 ADLKRGNITAEEEEIIIKLHASLGNR------WSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTLPVKVDVAA 136 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~~~~~~ed~~l~~~~~~~g 136 (418)
+.+++++||+|||++|+++|++||++ |..||++|||||++|||+||+++|++.+...+...++..+..... |
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~--G 81 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD--G 81 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT--S
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccC--C
Confidence 35678999999999999999999975 999999999999999999999999999976688777776554443 7
Q ss_pred CCCCcCcCCCCC
Q 014829 137 AGTGVASDRKAG 148 (418)
Q Consensus 137 ~k~~~iak~~~G 148 (418)
+ |..++ .+++
T Consensus 82 n-~ikis-~lp~ 91 (246)
T 1ign_A 82 N-LIKTK-VLPP 91 (246)
T ss_dssp C-BCEES-SCCC
T ss_pred C-ceeee-ccCc
Confidence 6 66666 5665
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-13 Score=107.79 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=47.6
Q ss_pred CCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCc
Q 014829 3 RAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLK 66 (418)
Q Consensus 3 R~p~c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ik 66 (418)
|..-...|.+++|+||+|||++|+++|++||. +|..||+.| + ||+.||+.||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence 44556679999999999999999999999995 699999999 6 999999999985 544443
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.31 E-value=1.1e-12 Score=106.64 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccchhhhhc-----cCCCcCC-CCCHHHHHHHHHHHHh
Q 014829 15 GRWTAEEDDILTKYIQANGEGSWRSLPKN----AGLLRCGKSCRLRWINYL-----RADLKRG-NITAEEEEIIIKLHAS 84 (418)
Q Consensus 15 g~WT~EED~~L~~lV~kyG~~~W~~IA~~----l~~~Rs~~QCr~Rw~~~L-----~p~ikkg-~WT~EED~~Ll~lv~~ 84 (418)
++||+|||+.|+++|++||.++|..|++. +++ ||+.||++||++++ .|.++++ ++.++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998899999986 676 99999999999988 6777777 7888888888888765
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.30 E-value=1.9e-12 Score=102.97 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=47.9
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcC----CChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 63 ADLKRGNITAEEEEIIIKLHASLG----NRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
+.+.+++||++||.+|++++.+|| .+|..||.+|||||+.||++||+.++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 6899999999999999999999988754
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.28 E-value=1.4e-12 Score=110.53 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=66.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccchhhhhc-----cCCCcCCCCCHHHHHH-H
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNA----GLLRCGKSCRLRWINYL-----RADLKRGNITAEEEEI-I 78 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l----~~~Rs~~QCr~Rw~~~L-----~p~ikkg~WT~EED~~-L 78 (418)
++..++++||+|||+.|+.+|++||.++|..|+..+ ++ ||..||++||++++ +|.++++.-+++|-.. +
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 467899999999999999999999988999999976 45 99999999999998 6999999888877655 7
Q ss_pred HHHHHhcC
Q 014829 79 IKLHASLG 86 (418)
Q Consensus 79 l~lv~~~G 86 (418)
+.|+..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=105.61 Aligned_cols=53 Identities=19% Similarity=0.420 Sum_probs=49.9
Q ss_pred cccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh
Q 014829 6 CCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60 (418)
Q Consensus 6 ~c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~ 60 (418)
.+.++...+++||+|||++|+++|++|| ++|..||++|++ ||+.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 4567888899999999999999999999 899999999998 9999999999998
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=103.12 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHh
Q 014829 64 DLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (418)
...+++||++||.+|+++|.+||.+|..||++|++||+.||+.||+++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999977
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.23 E-value=2.2e-12 Score=111.80 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=52.3
Q ss_pred ccCCCcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhh----CCCCChHHHHHHHHHhhh-----hhhcCC
Q 014829 61 LRADLKRGNITAEEEEIIIKLHASLGN-RWSLIASN----MPGRTDNEIKNYWNSHLS-----RKIHTF 119 (418)
Q Consensus 61 L~p~ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~qck~Rw~~~L~-----~~i~~~ 119 (418)
+.+..++++||.+||+.|+++|.+||. +|+.|++. |++||+.|||+||+++++ +.++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg 79 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 79 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC
Confidence 556778999999999999999999996 99999987 499999999999999998 555443
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-12 Score=106.73 Aligned_cols=54 Identities=22% Similarity=0.452 Sum_probs=50.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhccC
Q 014829 8 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRA 63 (418)
Q Consensus 8 ~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p 63 (418)
..|.+++|+||+|||++|+++|+.||. +|..||..|++ ||..||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 458899999999999999999999995 89999999998 9999999999999863
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=3.8e-12 Score=101.21 Aligned_cols=55 Identities=15% Similarity=0.342 Sum_probs=50.3
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccchhhhhcc
Q 014829 7 CEKVGLKKGRWTAEEDDILTKYIQANG---EGSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 7 c~kp~lkKg~WT~EED~~L~~lV~kyG---~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
-.++.+.+++||++||++|+++|++|| ..+|..||+.||+ ||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 466888999999999999999999999 3579999999998 999999999998765
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.14 E-value=4e-11 Score=97.53 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC-ChhHHhhh----CCCCChHHHHHHHHHhhhhhh
Q 014829 68 GNITAEEEEIIIKLHASLGN-RWSLIASN----MPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~qck~Rw~~~L~~~i 116 (418)
++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999985 899999999999999997543
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.12 E-value=1.1e-10 Score=98.94 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=48.6
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhhC----CCCChHHHHHHHHHhhhhhh
Q 014829 63 ADLKRGNITAEEEEIIIKLHASLGN-RWSLIASNM----PGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~qck~Rw~~~L~~~i 116 (418)
+..++++||+|||+.|+++|.+||. +|+.|++.+ ++||+.+||+||+++++...
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999996 999999865 89999999999999997543
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.11 E-value=8.8e-11 Score=90.26 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=45.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCChhHHh---hhCCCCChHHHHHHHHHhhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLGNRWSLIA---SNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA---~~lpgRT~~qck~Rw~~~L~~ 114 (418)
++.+||+|||+.|++.|++||.+|..|+ .++++||..++|+||+++++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 578999999999999998875
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.10 E-value=4e-11 Score=104.01 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=46.4
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCC-ChhHHhhh----CCCCChHHHHHHHHHhhh
Q 014829 63 ADLKRGNITAEEEEIIIKLHASLGN-RWSLIASN----MPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~qck~Rw~~~L~ 113 (418)
...++++||.|||+.|+++|++||. +|+.|++. |++||+.|||+||+++++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3456889999999999999999996 99999986 489999999999999994
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.05 E-value=1.6e-10 Score=95.82 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=45.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcC----CChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLG----NRWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
.+++||.+||.+|++++.+|| .+|..||.+|||||.+||++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999988664
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.88 E-value=2.1e-09 Score=89.03 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=59.3
Q ss_pred cccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhC-----CCCChHHHHHHHHHhhhhhhcCC
Q 014829 50 GKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNM-----PGRTDNEIKNYWNSHLSRKIHTF 119 (418)
Q Consensus 50 ~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----pgRT~~qck~Rw~~~L~~~i~~~ 119 (418)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||..++|+||..+.+..+...
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34578999999986 89999999999999999999999999999 58999999999999988877544
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=5.3e-10 Score=92.70 Aligned_cols=48 Identities=10% Similarity=0.311 Sum_probs=43.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccchhhhhc
Q 014829 13 KKGRWTAEEDDILTKYIQANG---EGSWRSLPKNAGLLRCGKSCRLRWINYL 61 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG---~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L 61 (418)
.++.||+|||++|.+++.+|+ ...|..||+.|++ ||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 468999999999999999997 4579999999998 99999999999875
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=5.3e-09 Score=79.93 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhh
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~ 113 (418)
..+||++|+.++++++.+||.+|..||.+||+||..||+.+|+...+
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 56999999999999999999999999999999999999999986543
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=2.7e-08 Score=78.73 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcC----CChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 64 DLKRGNITAEEEEIIIKLHASLG----NRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
..+.+.||.+||.+|.+++.+|+ .+|..||.+| |||..+|++||+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577999999999999999997 5899999998 99999999999988765
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.53 E-value=2.6e-08 Score=76.55 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=43.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccc---cccccccccccccchhhhhcc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLP---KNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA---~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
-++.+||+|||+.|++.|++||. +|..|+ ..+.+ ||....++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 47899999999999999999996 999999 45555 999999999998765
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=3.7e-08 Score=75.20 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=45.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhc
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L 61 (418)
+..-..++||++|++++.+++.+|| .+|..||..|++ |+..||+.+|....
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 3344678999999999999999999 699999999998 99999999997643
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.48 E-value=1.3e-07 Score=89.54 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=46.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 66 KRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
...+||.+|+.++++++.+||++|..||+.+++||..|||++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999988765
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=7.7e-08 Score=76.09 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=45.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccchhhhhccC
Q 014829 10 VGLKKGRWTAEEDDILTKYIQANGE---GSWRSLPKNAGLLRCGKSCRLRWINYLRA 63 (418)
Q Consensus 10 p~lkKg~WT~EED~~L~~lV~kyG~---~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p 63 (418)
.+.+++.||.|||++|.+++.+|+. ..|..||..+ + ||..||+.||..++..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHHh
Confidence 3456789999999999999999983 5699999998 4 9999999999887543
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.33 E-value=9.5e-07 Score=70.07 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----ChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 67 RGNITAEEEEIIIKLHASLGN----RWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
...||.+|+.+|.+++..|+. +|..||.++||||..+|+.||..+++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 458999999999999999983 7999999999999999999999886553
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.30 E-value=4.1e-07 Score=94.68 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 68 GNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
.+||.+|-.++++++.+||.+|..||..++.||..|||++|.++-++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999865443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.27 E-value=8.6e-07 Score=67.44 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CC-ChhHHhh-hCCCCChHHHHHHHHHhhh
Q 014829 67 RGNITAEEEEIIIKLHASL--------GN-RWSLIAS-NMPGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~--------G~-~W~~IA~-~lpgRT~~qck~Rw~~~L~ 113 (418)
|.+||+|||..|++.|.+| |+ -|..+|. .+|++|-.++|+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 43 4999999 7999999999999998875
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.17 E-value=4e-07 Score=72.21 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=43.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccchhhhhcc
Q 014829 14 KGRWTAEEDDILTKYIQANGE---GSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~---~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
...||.+|+++|.+++..|+. ..|..||..+++ ||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 467999999999999999974 469999999999 999999999998765
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.14 E-value=4.9e-07 Score=68.78 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccccccccccchhhhhcc
Q 014829 14 KGRWTAEEDDILTKYIQAN--------GEGSWRSLPK-NAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~ky--------G~~~W~~IA~-~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
|.+||+|||+.|+.+|.+| |..-|..+|. .++. +|-.+||+||..+|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6789999999999999999 4345999999 7887 999999999999875
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.04 E-value=1.6e-06 Score=82.13 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=45.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhhcc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
-...+||.||++++++++.+|| ++|..||+.+++ ||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4567999999999999999999 799999999999 999999999998764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.90 E-value=1.4e-05 Score=79.03 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh----------------------------------
Q 014829 15 GRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY---------------------------------- 60 (418)
Q Consensus 15 g~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~---------------------------------- 60 (418)
+.||..+...++.++.+||..+|..||..|++ ++...++..+.-+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999899999999987 8877664211111
Q ss_pred -------------c---cCCCcCCCCCHHHHHHHHHHHHhcCC----ChhHHh------------hhCCCCChHHHHHHH
Q 014829 61 -------------L---RADLKRGNITAEEEEIIIKLHASLGN----RWSLIA------------SNMPGRTDNEIKNYW 108 (418)
Q Consensus 61 -------------L---~p~ikkg~WT~EED~~Ll~lv~~~G~----~W~~IA------------~~lpgRT~~qck~Rw 108 (418)
| .+..+...||.+||..|+-++.+||- .|..|. -++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234458999999999999999994 699996 245789999999999
Q ss_pred HHhhhhhh
Q 014829 109 NSHLSRKI 116 (418)
Q Consensus 109 ~~~L~~~i 116 (418)
..+++-..
T Consensus 270 ~tLi~~ie 277 (304)
T 1ofc_X 270 NTLITLIE 277 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987543
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=3.1e-05 Score=59.41 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=45.1
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhh-hCCCCChHHHHHHHHHh
Q 014829 62 RADLKRGNITAEEEEIIIKLHASLGNRWSLIAS-NMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~qck~Rw~~~ 111 (418)
.|.++..+||++|-.+..+.+.+||.+|..|++ .|++||..||...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 366778899999999999999999999999999 58999999999888743
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.82 E-value=1.9e-05 Score=64.70 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---ChhHHhhhCCCCChHHHHHHHHHhhhhhhc
Q 014829 69 NITAEEEEIIIKLHASLGN---RWSLIASNMPGRTDNEIKNYWNSHLSRKIH 117 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~ 117 (418)
-||.++|..||...++-|. .|..||+.|.+|+++|+++||+.+++-.-+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 899999999999999999999998876443
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.77 E-value=3.9e-05 Score=63.40 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=51.6
Q ss_pred chhhhhccCCCcCCCCCHHHHHHHHHHHHhcCCChhHHhhhCC-----CCChHHHHHHHHHhhhhhhcC
Q 014829 55 LRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMP-----GRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 55 ~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lp-----gRT~~qck~Rw~~~L~~~i~~ 118 (418)
+-|..+|.. ..||.+|-..|+.|+++|+-+|..|+.++. .||-.++|.||..+.++.+..
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456666653 689999999999999999999999998873 799999999999998887643
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.70 E-value=9.8e-06 Score=64.13 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----ChhHHhhhCCCCChHHHHHHHH
Q 014829 67 RGNITAEEEEIIIKLHASLGN----RWSLIASNMPGRTDNEIKNYWN 109 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~qck~Rw~ 109 (418)
..+||.+|+.+|.+++.+|.. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 8999999999999999999885
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.87 E-value=5.4e-06 Score=64.57 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---ChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 69 NITAEEEEIIIKLHASLGN---RWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
-||.+||..|+..+++-|. .|+.||..| +||++|+++||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 899999999 99999999999988764
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.64 E-value=9.5e-06 Score=64.20 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccchhh
Q 014829 14 KGRWTAEEDDILTKYIQANGEG---SWRSLPKNAGLLRCGKSCRLRWI 58 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~---~W~~IA~~l~~~Rs~~QCr~Rw~ 58 (418)
...||.+|+++|.+++..|+.. .|.+||..+|+ ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999743 79999999998 99999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=7.5e-05 Score=57.20 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=44.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccchhhh
Q 014829 9 KVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPK-NAGLLRCGKSCRLRWIN 59 (418)
Q Consensus 9 kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~-~l~~~Rs~~QCr~Rw~~ 59 (418)
.|.+....||+||-++..+++.+|| .+|..|++ .+++ |+..||...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 4788899999999999999999999 59999999 5888 999999887754
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.21 E-value=0.00045 Score=57.03 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHh
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (418)
...||++|-.+..+...+||.+|..||..||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988743
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.20 E-value=0.00058 Score=53.35 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhh-hCCCCChHHHHHHHHHh
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIAS-NMPGRTDNEIKNYWNSH 111 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~qck~Rw~~~ 111 (418)
..+||++|-.+..+.+.+||.+|..|++ .||+||..+|...|...
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 4589999999999999999999999999 58999999999998743
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.04 E-value=0.00022 Score=74.37 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=42.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~ 60 (418)
...+||.+|-+++++++.+|| ++|..||..+++ |+..||+.+|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 468999999999999999999 699999999999 9999999999765
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.03 E-value=0.0002 Score=59.16 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=43.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccchhhhhcc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAG----LLRCGKSCRLRWINYLR 62 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~----~~Rs~~QCr~Rw~~~L~ 62 (418)
|....||.||+..|++++++|+ ..|..|+..+. ..||..+.+.||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999 58999999984 23999999999987643
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.73 E-value=0.001 Score=53.34 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC----------CChhHHhhhC----CCCChHHHHHHHHHhhhhhh
Q 014829 67 RGNITAEEEEIIIKLHASLG----------NRWSLIASNM----PGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----------~~W~~IA~~l----pgRT~~qck~Rw~~~L~~~i 116 (418)
...||.+|-..||++...+. ..|..||..| -.||+.||+.+|.++.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999997532 1599999987 37999999999999888753
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.46 E-value=0.00096 Score=55.03 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhh
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWIN 59 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~ 59 (418)
...||++|-++..+++..|| ++|..||+.+++ |+..||...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence 46799999999999999999 699999999998 999999988754
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.32 E-value=0.0013 Score=51.30 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=40.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccchhhh
Q 014829 13 KKGRWTAEEDDILTKYIQANGEGSWRSLPK-NAGLLRCGKSCRLRWIN 59 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~~~W~~IA~-~l~~~Rs~~QCr~Rw~~ 59 (418)
....||++|-.+..+++.+|| .+|..|++ .+++ |+..||..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 456899999999999999999 59999999 4888 999999988764
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.31 E-value=0.0066 Score=61.39 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh----------------------------------
Q 014829 15 GRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY---------------------------------- 60 (418)
Q Consensus 15 g~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~---------------------------------- 60 (418)
+.||..+=..++.++.+||..+-..||..|.++++...++ +|..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999888999999997227766655 22211
Q ss_pred --------------c--c-CCC--cCCCCCHHHHHHHHHHHHhcC----CChhHHhhh------------CCCCChHHHH
Q 014829 61 --------------L--R-ADL--KRGNITAEEEEIIIKLHASLG----NRWSLIASN------------MPGRTDNEIK 105 (418)
Q Consensus 61 --------------L--~-p~i--kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~------------lpgRT~~qck 105 (418)
| . +.. ++..||.+||..||-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 0 111 345899999999999999999 469999432 4679999999
Q ss_pred HHHHHhhhhhhcC
Q 014829 106 NYWNSHLSRKIHT 118 (418)
Q Consensus 106 ~Rw~~~L~~~i~~ 118 (418)
.|...+|+-..+.
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999765544
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.15 E-value=0.00044 Score=55.59 Aligned_cols=49 Identities=18% Similarity=0.456 Sum_probs=40.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCccccccccc---cccccccccchhhhhc
Q 014829 13 KKGRWTAEEDDILTKYIQANGE---------GSWRSLPKNAG---LLRCGKSCRLRWINYL 61 (418)
Q Consensus 13 kKg~WT~EED~~L~~lV~kyG~---------~~W~~IA~~l~---~~Rs~~QCr~Rw~~~L 61 (418)
+...||.+|-..|+.+...+.. .-|..||..|. ..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5688999999999999986421 15999998865 3499999999999864
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.13 E-value=0.0014 Score=53.80 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccchhhhhc
Q 014829 16 RWTAEEDDILTKYIQANGE--GSWRSLPKNAGLLRCGKSCRLRWINYL 61 (418)
Q Consensus 16 ~WT~EED~~L~~lV~kyG~--~~W~~IA~~l~~~Rs~~QCr~Rw~~~L 61 (418)
.||.|||..++..+++.|. .-|..||+.|++ |++.|+.+||+..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 4999999999999999984 469999999998 99999999998743
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.13 E-value=0.00089 Score=52.16 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccchhhhhcc
Q 014829 15 GRWTAEEDDILTKYIQANGE--GSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (418)
Q Consensus 15 g~WT~EED~~L~~lV~kyG~--~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~ 62 (418)
-.||.|||..|+..+++-|. .-|..||..+ + |++.|+..||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999999985 3699999999 4 999999999988654
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.04 E-value=0.0089 Score=55.03 Aligned_cols=45 Identities=9% Similarity=0.251 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhcC-CChhHHhh--hC--C--------C--CChHHHHHHHHHhhh
Q 014829 69 NITAEEEEIIIKLHASLG-NRWSLIAS--NM--P--------G--RTDNEIKNYWNSHLS 113 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~--~l--p--------g--RT~~qck~Rw~~~L~ 113 (418)
.||.+||..|+..|.+|| .+|..|.. .| . . +++..+..|...+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 699999999999999999 89999965 21 1 2 345578888776665
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.46 E-value=0.03 Score=46.12 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=41.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccc----ccccccccchhhhhc
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGL----LRCGKSCRLRWINYL 61 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~----~Rs~~QCr~Rw~~~L 61 (418)
|+...||.||...|..++++|. -.|..|+..... .|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999 489999988752 399999999998764
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.25 E-value=0.17 Score=38.86 Aligned_cols=47 Identities=17% Similarity=0.007 Sum_probs=40.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC---ChhHHhhhC--CCCChHHHHHHHHHhh
Q 014829 66 KRGNITAEEEEIIIKLHASLGN---RWSLIASNM--PGRTDNEIKNYWNSHL 112 (418)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~---~W~~IA~~l--pgRT~~qck~Rw~~~L 112 (418)
.+-.||+|.-+..+++|.++|. .+..|.+.| +|.|..+|+.+.+.|-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999994 478998876 7899999999877653
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.02 E-value=0.072 Score=48.88 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=31.6
Q ss_pred ccccCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 014829 5 PCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPK 42 (418)
Q Consensus 5 p~c~kp~lkKg~WT~EED~~L~~lV~kyG~~~W~~IA~ 42 (418)
|++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44555555566799999999999999999999999964
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=88.85 E-value=0.57 Score=46.16 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 67 RGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
-+.||..+...++.++.+|| ..|..||..|+|+|...|+..+.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 34799999999999999999 5899999999999999997776666554
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.23 E-value=0.88 Score=44.07 Aligned_cols=28 Identities=36% Similarity=0.645 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 014829 15 GRWTAEEDDILTKYIQANGEGSWRSLPK 42 (418)
Q Consensus 15 g~WT~EED~~L~~lV~kyG~~~W~~IA~ 42 (418)
-.|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999963
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=68.80 E-value=2.8 Score=32.10 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=36.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCC--Ccccccccccc-ccccccccchhhhh
Q 014829 12 LKKGRWTAEEDDILTKYIQANGEG--SWRSLPKNAGL-LRCGKSCRLRWINY 60 (418)
Q Consensus 12 lkKg~WT~EED~~L~~lV~kyG~~--~W~~IA~~l~~-~Rs~~QCr~Rw~~~ 60 (418)
-.+-.||+|..++...+|+..|.. .+..|...|+. +.|..+++.|.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 356789999999999999999942 15677777663 26777777665544
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=66.02 E-value=9.7 Score=36.76 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CChhHHhh--hCCCCChHHHHHHHHHhhhhhh
Q 014829 67 RGNITAEEEEIIIKLHASLG---NRWSLIAS--NMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G---~~W~~IA~--~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+++||..|-..|++.+.+|| .+|..|+. .|+.++...++.-|..++....
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 58999975 5799999999998887776543
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.28 E-value=5.6 Score=33.27 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++|. .|..||..|.--.+..+|..|..+|-+.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 37778888773 7999999884444889999999999774
No 99
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=59.94 E-value=10 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCCCC----hHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPGRT----DNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++|. .|..||..|.--. +.++|..|.++|-+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888873 7999999983222 568899999998774
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=58.78 E-value=12 Score=30.57 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=29.5
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCCCC----hHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPGRT----DNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++|. .|..||..|.--. +.++|..|.++|-+.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777777773 7999999993322 468899999998774
No 101
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=55.45 E-value=8.1 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHhcCC--------ChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 78 IIKLHASLGN--------RWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 78 Ll~lv~~~G~--------~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
|..+|.+.|. .|..||..|.--.+..+|..|.++|-+.=
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 7777777773 69999998844348999999999998854
No 102
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.54 E-value=14 Score=31.16 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=29.5
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCCCC----hHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPGRT----DNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++|. .|..||..|.--+ +.++|..|.++|-+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777887773 7999999983221 368899999999874
No 103
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=53.94 E-value=14 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHhcCC--------ChhHHhhhCCCCC----hHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNMPGRT----DNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++|. .|..||..|.--+ +.++|..|.++|.+.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777877773 7999999983222 468899999999875
No 104
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=52.94 E-value=4.7 Score=34.34 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=40.2
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccc----ccccchhhhhccCCCcCCCCCHHHHHHHHHHHH
Q 014829 24 ILTKYIQANGE-------GSWRSLPKNAGLLRCG----KSCRLRWINYLRADLKRGNITAEEEEIIIKLHA 83 (418)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IA~~l~~~Rs~----~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~ 83 (418)
+|..+|.+.|. +.|..||..|+...+. .+.+..|..+|.|-- .++++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 45556666652 4699999999764432 456888999987632 388899888887664
No 105
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=49.61 E-value=17 Score=30.77 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=51.2
Q ss_pred CCccCCCCHHHH--HHHHHHHHHhCCCCccccccccccccccccccchhhhhccCCCcCCCCCHHHHHHHHHHHHhcCC-
Q 014829 11 GLKKGRWTAEED--DILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGN- 87 (418)
Q Consensus 11 ~lkKg~WT~EED--~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p~ikkg~WT~EED~~Ll~lv~~~G~- 87 (418)
+.=+.+|.+.+. +.|.+..++.|. .-..|+. +++ |.- + =-+|..+|.++|.
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~l-----------D------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CEL-----------D------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EEC-----------C------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eec-----------c------------HHHHHHHHHHcCcH
Confidence 344668988765 457777777774 4544543 232 211 1 1347788888884
Q ss_pred -------ChhHHhhhC--CCC---ChHHHHHHHHHhhhhh
Q 014829 88 -------RWSLIASNM--PGR---TDNEIKNYWNSHLSRK 115 (418)
Q Consensus 88 -------~W~~IA~~l--pgR---T~~qck~Rw~~~L~~~ 115 (418)
.|..||..| |.- .+..+|..|.++|-+.
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 799999988 322 2468899999998774
No 106
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.78 E-value=21 Score=30.20 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCC--------ChhHHhhhC--CCC---ChHHHHHHHHHhhhhh
Q 014829 76 EIIIKLHASLGN--------RWSLIASNM--PGR---TDNEIKNYWNSHLSRK 115 (418)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~qck~Rw~~~L~~~ 115 (418)
-+|..+|.++|. .|..||..| +.. .+.++|..|..+|.+.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 347788888873 799999988 322 2578899999999875
No 107
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=47.02 E-value=10 Score=30.38 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=28.1
Q ss_pred HHHHHHHhcC--------CChhHHhhhCCCC----ChHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLG--------NRWSLIASNMPGR----TDNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G--------~~W~~IA~~lpgR----T~~qck~Rw~~~L~~~ 115 (418)
+|..+|.+.| +.|..||..|.-- .+.++|..|.++|.+.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3677777776 3799999988221 2568899999888663
No 108
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.58 E-value=5.4 Score=33.36 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHHHHhCC-------CCccccccccccccccccccchhhhhccC
Q 014829 24 ILTKYIQANGE-------GSWRSLPKNAGLLRCGKSCRLRWINYLRA 63 (418)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IA~~l~~~Rs~~QCr~Rw~~~L~p 63 (418)
+|..+|.+.|. +.|..||..|+. -.+.+.+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 57788888873 479999999988 4478888999988875
No 109
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.75 E-value=24 Score=30.59 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHHHHHhcCC--------ChhHHhhhC--CCC---ChHHHHHHHHHhhhhhh
Q 014829 77 IIIKLHASLGN--------RWSLIASNM--PGR---TDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~qck~Rw~~~L~~~i 116 (418)
+|..+|.+.|. .|..||..| +.. .+.++|..|..+|-+.=
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 47778888874 799999988 322 25689999999998853
No 110
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=43.38 E-value=30 Score=34.88 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhcC-CChhHHhhhCC-CCChHHHHHHHHHhhh
Q 014829 68 GNITAEEEEIIIKLHASLG-NRWSLIASNMP-GRTDNEIKNYWNSHLS 113 (418)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw~~~L~ 113 (418)
+.||.-+=..++.++.+|| ..-..||..|. |+|...|+........
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 57999999997 9999999944443333
No 111
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.29 E-value=30 Score=24.73 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 73 EEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
+.+..++.++-..|..+..||..| |-+...++.+.+..++.
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556666667788999999999 88999998887765544
No 112
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.02 E-value=16 Score=29.83 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHhcC--------CChhHHhhhCC--CC---ChHHHHHHHHHhhhhh
Q 014829 77 IIIKLHASLG--------NRWSLIASNMP--GR---TDNEIKNYWNSHLSRK 115 (418)
Q Consensus 77 ~Ll~lv~~~G--------~~W~~IA~~lp--gR---T~~qck~Rw~~~L~~~ 115 (418)
+|..+|.++| +.|..||..|. .. .+.++|..|..+|.+.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4777777777 37999999883 21 2468999999998774
No 113
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.71 E-value=38 Score=24.90 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHHHHHHHh----cCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 74 EEEIIIKLHAS----LGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 74 ED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
.+..++.+.-- .|..+.+||..| |-|...++.+....++.
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555443 578999999999 89999999887766544
No 114
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.22 E-value=8.9 Score=31.42 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCC-------CCcccccccccccc----ccccccchhhhhccC
Q 014829 23 DILTKYIQANGE-------GSWRSLPKNAGLLR----CGKSCRLRWINYLRA 63 (418)
Q Consensus 23 ~~L~~lV~kyG~-------~~W~~IA~~l~~~R----s~~QCr~Rw~~~L~p 63 (418)
-+|..+|.+.|. +.|..||..|+... .+.+.+..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357778887763 47999999998643 235778889888876
No 115
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.55 E-value=7.8 Score=32.46 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---cccccchhhhhccC
Q 014829 24 ILTKYIQANGE-------GSWRSLPKNAGLLRC---GKSCRLRWINYLRA 63 (418)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IA~~l~~~Rs---~~QCr~Rw~~~L~p 63 (418)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57888888873 479999999987432 34567778877764
No 116
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.76 E-value=40 Score=24.41 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHH----hcCCChhHHhhhCCCCChHHHHHHHHHhhhhh
Q 014829 74 EEEIIIKLHA----SLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 115 (418)
Q Consensus 74 ED~~Ll~lv~----~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~~ 115 (418)
.+..++.+.- ..|..+.+||..| |-|...++.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444554544 3478999999999 999999999887766543
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.44 E-value=59 Score=27.85 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhhcC
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 118 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~~ 118 (418)
+-|.+|+++.++.| -.+..||+.+ |=|...|+.|.+.+....+-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45788999888887 5899999999 999999999999998887643
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.86 E-value=9.2 Score=32.46 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----cccccchhhhhccC
Q 014829 24 ILTKYIQANGE-------GSWRSLPKNAGLLRC----GKSCRLRWINYLRA 63 (418)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IA~~l~~~Rs----~~QCr~Rw~~~L~p 63 (418)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57788888773 479999999886432 34667888888765
No 119
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=31.83 E-value=10 Score=32.06 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---cccccchhhhhccC
Q 014829 24 ILTKYIQANGE-------GSWRSLPKNAGLLRC---GKSCRLRWINYLRA 63 (418)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IA~~l~~~Rs---~~QCr~Rw~~~L~p 63 (418)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778887763 479999999887432 34667777777754
No 120
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=29.74 E-value=11 Score=30.79 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc---cccccchhhhhccC
Q 014829 23 DILTKYIQANGE-------GSWRSLPKNAGLLRC---GKSCRLRWINYLRA 63 (418)
Q Consensus 23 ~~L~~lV~kyG~-------~~W~~IA~~l~~~Rs---~~QCr~Rw~~~L~p 63 (418)
-+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357788888873 479999999986332 35667777777754
No 121
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.32 E-value=13 Score=31.42 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc---cccccchhhhhccC
Q 014829 23 DILTKYIQANGE-------GSWRSLPKNAGLLRC---GKSCRLRWINYLRA 63 (418)
Q Consensus 23 ~~L~~lV~kyG~-------~~W~~IA~~l~~~Rs---~~QCr~Rw~~~L~p 63 (418)
-+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357788888873 479999999987332 24556677776654
No 122
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.35 E-value=65 Score=24.71 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 74 EEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 74 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
.+..++.++-..|-.-..||..| |-+...++.|.+..+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666666788899999999 89999999887755443
No 123
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.50 E-value=36 Score=29.50 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=35.1
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----cccccchhhhhccC--CCcCCCCCHHHHH
Q 014829 24 ILTKYIQANGE-------GSWRSLPKNAGLLRC----GKSCRLRWINYLRA--DLKRGNITAEEEE 76 (418)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IA~~l~~~Rs----~~QCr~Rw~~~L~p--~ikkg~WT~EED~ 76 (418)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.| ...+|.=.++|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~ 133 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQ 133 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 57777877763 479999999886432 35678888888876 2334444444433
No 124
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.73 E-value=1.2e+02 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhh
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI 116 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i 116 (418)
+-|..|+.+....| ..+..||+.+ |=+...++.|.+.+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34667777777777 5899999999 8899999999999887765
No 125
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.39 E-value=1.1e+02 Score=22.14 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 70 ITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 70 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
.|+.|-+. +.++ ..|..-.+||..| |-+...++.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4455 6788899999999 88999999887766544
No 126
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.82 E-value=1.4e+02 Score=25.84 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcC-CChhHHhhhCCCCChHHHHHHHHHhhhhhhc
Q 014829 73 EEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKIH 117 (418)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~L~~~i~ 117 (418)
+-|.+|+.+.++.| ..+..||+.+ |-+...|+.|.+.+....+-
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45677888888777 5899999999 88999999999999887763
No 127
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.80 E-value=54 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.3
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhC
Q 014829 10 VGLKKGRWTAEEDDILT--------KYIQANG 33 (418)
Q Consensus 10 p~lkKg~WT~EED~~L~--------~lV~kyG 33 (418)
|.-..|-||+++|+.|. ++++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 44568999999999875 5788887
No 128
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.60 E-value=64 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.5
Q ss_pred CCCcCCCCCHHHHHHHH--------HHHHhcC
Q 014829 63 ADLKRGNITAEEEEIII--------KLHASLG 86 (418)
Q Consensus 63 p~ikkg~WT~EED~~Ll--------~lv~~~G 86 (418)
|.-..|-||.++|+.|. +|+++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 55678999999999887 4555565
No 129
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=21.51 E-value=1.1e+02 Score=23.29 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHHHHHHh----cCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 74 EEEIIIKLHAS----LGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 74 ED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
.+..++.+.-- .|-.+..||..| |-|...++.+....+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444444443 567899999999 89999999887765544
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.24 E-value=1.5e+02 Score=23.03 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 67 RGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
....|+.|-+.|.-++ .|..-.+||..| |-+...++.+....+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4468888877666554 788999999999 89999999988877654
No 131
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=20.65 E-value=1.3e+02 Score=23.41 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhcCCChhHHhhhCCCCChHHHHHHHHHhhhh
Q 014829 69 NITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 114 (418)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~L~~ 114 (418)
..|+.|-+.|.. + ..|..-.+||..| |-+...++.+.+..+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655554 5 7788899999999 88999999988766554
No 132
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.60 E-value=3.6e+02 Score=22.28 Aligned_cols=95 Identities=7% Similarity=-0.032 Sum_probs=55.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccchhhhh------ccCCCc----CCCCCHHHHHHHHHHHH
Q 014829 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY------LRADLK----RGNITAEEEEIIIKLHA 83 (418)
Q Consensus 14 Kg~WT~EED~~L~~lV~kyG~~~W~~IA~~l~~~Rs~~QCr~Rw~~~------L~p~ik----kg~WT~EED~~Ll~lv~ 83 (418)
..+.|.++-..++.++. .| ..-..||..++. +...+ .||... +.+... ....+.+..+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34688888888888774 46 478899998874 33333 233332 222211 23578888888888887
Q ss_pred hcC-CChhHHhhhC---------CCCChHHHHHHHHHhhh
Q 014829 84 SLG-NRWSLIASNM---------PGRTDNEIKNYWNSHLS 113 (418)
Q Consensus 84 ~~G-~~W~~IA~~l---------pgRT~~qck~Rw~~~L~ 113 (418)
+.. -.-..|+..+ ..-+..+|....+.++.
T Consensus 98 ~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 98 QNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp HCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred HCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 643 2334555544 13566666655544443
Done!