Query 014832
Match_columns 417
No_of_seqs 505 out of 1433
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 18:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 9.9E-32 3.4E-36 255.2 30.6 322 54-407 43-401 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 9E-32 3.1E-36 256.4 25.7 345 38-407 25-403 (451)
3 4gc0_A D-xylose-proton symport 100.0 8.9E-29 3.1E-33 238.4 24.7 348 40-406 11-425 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.9E-28 2E-32 232.7 28.3 327 67-409 49-444 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4.6E-30 1.6E-34 238.7 8.7 325 48-406 11-345 (375)
6 2cfq_A Lactose permease; trans 99.9 4.3E-26 1.5E-30 214.9 9.1 329 50-407 20-369 (417)
7 2xut_A Proton/peptide symporte 99.9 7.7E-24 2.6E-28 205.6 19.4 356 40-409 15-463 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 8.1E-12 2.8E-16 118.3 18.8 153 56-216 271-431 (451)
9 3o7q_A L-fucose-proton symport 99.3 1.5E-10 5.3E-15 109.1 21.6 146 57-213 278-427 (438)
10 2cfq_A Lactose permease; trans 99.3 2.7E-11 9.3E-16 113.6 12.2 145 71-222 258-403 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 2E-09 6.8E-14 103.1 13.6 154 57-222 303-475 (491)
12 4gc0_A D-xylose-proton symport 99.0 8.7E-09 3E-13 98.6 15.4 164 57-228 297-472 (491)
13 2gfp_A EMRD, multidrug resista 98.8 2.2E-08 7.7E-13 92.2 10.8 124 267-407 19-144 (375)
14 2xut_A Proton/peptide symporte 98.7 6.4E-08 2.2E-12 93.4 11.1 143 247-406 12-167 (524)
15 2g9p_A Antimicrobial peptide l 40.5 4.3 0.00015 19.3 -0.5 13 92-104 3-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=9.9e-32 Score=255.20 Aligned_cols=322 Identities=14% Similarity=0.143 Sum_probs=237.4
Q ss_pred hhhhhhHHHHHHhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHHHHHH-H---hcCchHHHHHH
Q 014832 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-T---KHSPQYKILMI 129 (417)
Q Consensus 54 ~~~~~~l~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~~-~---~~~~~~~~l~~ 129 (417)
....+.+|.+.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+ + .++++++.+++
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 3447888899999999999999999999999999999999999999999999999999999999 8 88999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhccCC---------
Q 014832 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV-DSFSLG--------- 196 (417)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~-~~~~~g--------- 196 (417)
.|++.|++.+...+.. ..++.|+ ++|++ ..+..... ..+|..+++.+++.+. +.. ..
T Consensus 123 ~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~-------~~~~~~~~-~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~ 192 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAA-NPFVTVLGPESSGHF-------RLNLAQTF-NSFGAIIAVVFGQSLILSNV-PHQSQDVLDKM 192 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHH-------HHHHHHHH-HHHHHHHHHHHTTHHHHTSS-CCCCHHHHHHS
T ss_pred HHHHHHhhHHHhhhhH-HHHHHHHcCchhHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHhccc-ccccccccccC
Confidence 9999999999998888 6789998 33332 22222222 5556666777776666 332 11
Q ss_pred ---------------CchhHHHHHHHHHHHHHHHHh-hccccCCCCCCchhHHHHHHhHHHHHhccchhHHHHHHHHHHH
Q 014832 197 ---------------PVAPFDAAACFLAIGMVIILS-SWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFE 260 (417)
Q Consensus 197 ---------------w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (417)
||+.|++.+...++..++... ..||++++++++ +++++.++++++++|+|+++...+...+..
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-AKQGSFSASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-ccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence 999998877766655554442 344444332121 222333456788899999888777665544
Q ss_pred hHHHHHHHhhhccc-cCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHhhc
Q 014832 261 GSMYTFVFLWTPAL-SPNDEEIP---HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFL 336 (417)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (417)
.... ....|.|.| .++..+.+ .+.......++.+++.++.+++.||+++| +.+..+..+..++.+.....+
T Consensus 272 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-- 346 (438)
T 3o7q_A 272 GAQT-ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH--KVLAAYALIAMALCLISAFAG-- 346 (438)
T ss_dssp HHHH-HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHcC--
Confidence 4333 455688998 77754544 36666777889999999999999999887 777777766666555544433
Q ss_pred cCCCCCCCCCcccchhHHHHHHHHHHHhhhccchhHHHHHhhcCCcccccccccccccchhHHHHHHHHHh
Q 014832 337 VAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV 407 (417)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 407 (417)
+.+ ......+.+++.+..+|...++..|.+|++ ++++.++.. ...++..++....
T Consensus 347 -------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~ 401 (438)
T 3o7q_A 347 -------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVM 401 (438)
T ss_dssp -------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHH
T ss_pred -------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHH
Confidence 223 344557788888888999999999999977 888887766 3456666665543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=9e-32 Score=256.42 Aligned_cols=345 Identities=10% Similarity=0.046 Sum_probs=249.0
Q ss_pred chhHHHHHHHHHHHHhhh----hhhhHHHHHHhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHH
Q 014832 38 FKNNYLLVYSLMMAGDWL----QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (417)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~----~~~~l~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~ 113 (417)
.++..+....+..+..++ ..+.+|.+.+++ .++.+.|++.+++.++..++++++|+++||+|||+++..+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 344444444444444433 367888888999 999999999999999999999999999999999999999999999
Q ss_pred HHHH-Hhc----CchHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 014832 114 LSCI-TKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (417)
Q Consensus 114 ~~~~-~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~ 188 (417)
++.+ +++ +++++.+++.|++.|++.+...+.. .+++.|+.++ +.+....+.... +..+|..+++.+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~----~~r~~~~~~~~~-~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQ----KERGGIVSVWNC-AHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTT----THHHHHHHHHHH-HHHHHHTSHHHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH-HHHHHHHCCc----hhhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999 999 9999999999999999999998888 6789998211 112223333322 256666777777777
Q ss_pred hhhhccCC-CchhHHHHHHHHHHHHHHHHhhccccCCCCC-----C-chh-------H---HHHHHh-HHHHHhccchhH
Q 014832 189 LVDSFSLG-PVAPFDAAACFLAIGMVIILSSWTENYGDPS-----E-SKD-------L---LTQFRG-AAVAIASDEKIA 250 (417)
Q Consensus 189 ~~~~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~-------~---~~~~~~-~~~~~~~~~~~~ 250 (417)
+.+.. | ||++|++.+++.++..++.....||++++.+ + .++ + ..+.++ ..++.+|+|.++
T Consensus 178 l~~~~--g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 178 GMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp HHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHH
T ss_pred HHHHh--ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHH
Confidence 66666 8 9999999998877766666556666443211 0 000 0 000011 146677888888
Q ss_pred HHHHHHHHHHhHHHHHHHhhhccccCCCCCCCh---hHHHHHHHHHHHHHHHHHHHHHhhc--CCCccchHHHHHHHHH-
Q 014832 251 LLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVFVVSS- 324 (417)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~l~~~~~~~~- 324 (417)
...+...+...... ....|.|.|+++..+.+. +.......++.+++.++.+++.||+ ++| +.+..+..+..
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~~~~~~~ 332 (451)
T 1pw4_A 256 YIAIANVFVYLLRY-GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--GATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHH
Confidence 77766655444444 455689999988555543 5666777889999999999999998 776 66655555544
Q ss_pred HHHHHHHHHhhccCCCCCCCCCcccchhHHHHHHHHHHHhhhccchhHHHHHhhcCCcccccccccccccchhH-HHHHH
Q 014832 325 VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI-FVCVV 403 (417)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~ 403 (417)
++........ +. +.+......++.|++.+...+...++..|.+|++.|++++|+.+...++ +..++
T Consensus 333 ~~~~~~~~~~--~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 333 IATIVYWMNP--AG-----------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHTTSCC--TT-----------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--cc-----------CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333222221 00 3455666777788888888888899999999999999999999998888 88777
Q ss_pred HHHh
Q 014832 404 LYNV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
....
T Consensus 400 ~~~~ 403 (451)
T 1pw4_A 400 SAIV 403 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=8.9e-29 Score=238.40 Aligned_cols=348 Identities=14% Similarity=0.102 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHhhhh----hhhHHHHHHhcCC--------CcchHHHHHHHHHHHHhhhhccccccccccCchHHHHH
Q 014832 40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGF--------GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT 107 (417)
Q Consensus 40 ~~~~~~~~~~~~~~~~~----~~~l~~l~~~~g~--------s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 107 (417)
+.+.++..+..+.++++ +..+|.+.++++. ++.+.|++.+.+.+|..++++++|+++||+|||+++.+
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33333334555555655 4566677666532 23456899999999999999999999999999999999
Q ss_pred HHHHHHHHHH-Hh------------------cCchHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh---cccchhhhHHHH
Q 014832 108 YCLTYILSCI-TK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSI 165 (417)
Q Consensus 108 ~~~~~~~~~~-~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~ 165 (417)
+.+++.++.+ ++ +++|+++++++|+++|++.|...+.. +.+++|. ++|++.......
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~-~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLS-PMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCHHhhhhhHHhhhh
Confidence 9999999998 87 47899999999999999999999988 8899998 444443333332
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhh--ccCCCchhHHHHHHHHHHHHHHHHhhccccCC------CCCCchhHHHHHH
Q 014832 166 TFSKAIFLGNGLVAILSGLFGNLLVDS--FSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQFR 237 (417)
Q Consensus 166 ~~~~~~~~g~~~g~~l~~~~~~~~~~~--~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 237 (417)
....|...+..++.......... ..++||..+.+..+..++..+..+ ..||+++ +++++++..++..
T Consensus 170 ----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 170 ----AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY-TVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG-GSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh-cCCCChHHHHHcCchhHHHHhHHHhc
Confidence 22232222222222221111000 012577787777776666555544 6777632 2211111111000
Q ss_pred ----------------------hHHHHHhccchhHHHHHHHHHHHhHHHHHHHhhhccccCCC-CCC-ChhHHHHHHHHH
Q 014832 238 ----------------------GAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-EEI-PHGFIFATFMLA 293 (417)
Q Consensus 238 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 293 (417)
.......+.++.........+.+.........|.|.+.++. ... ..........+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 00111222233333333333444445555555666665542 221 123334566678
Q ss_pred HHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhHHHHHHHHHHHhhhc-cchhH
Q 014832 294 SMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI-FWPSI 372 (417)
Q Consensus 294 ~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~ 372 (417)
..++.++.+++.||+||| +.+..+.....++++.......... +.+..++...+...+.+. ..|..
T Consensus 325 ~~~~~~~~~~l~dr~Grr--~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRK--PLQIIGALGMAIGMFSLGTAFYTQA-----------PGIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHhhcCc--chhccchHHHHHHHHHHHHHHhccc-----------chHHHHHHHHHHHHHHHhHHHHHH
Confidence 889999999999999998 7777777766666655544332111 223333333333333333 34778
Q ss_pred HHHHhhcCCcccccccccccccchhHHHHHHHHH
Q 014832 373 MKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYN 406 (417)
Q Consensus 373 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 406 (417)
+.+.+|.+|++.|+++.|+.+...++++.++...
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~ 425 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT 425 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888888877766544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=5.9e-28 Score=232.69 Aligned_cols=327 Identities=16% Similarity=0.085 Sum_probs=218.7
Q ss_pred cCCCcchHHHHHHHHHHHHhhhhccccccccc-cCchHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHhhhhhhh
Q 014832 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSCI-TKHSPQYKILMIGRILGGIATSLLFSA 144 (417)
Q Consensus 67 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (417)
+|.|+.+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+ ++++++++.+++.|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 8999999999999999999 999999999999999999999999888
Q ss_pred HHHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHhhcccc-
Q 014832 145 FESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN- 222 (417)
Q Consensus 145 ~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~- 222 (417)
. .+++.|+ .++.+. +....+.... +..+|..++|.+++.+.+.. |||++|++.++..++..+......++.
T Consensus 129 ~-~~~~~~~~~~~~~~---r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 129 V-STLVGTLYDEHDRR---RDAGFSIFVF-GINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp H-HHHHHHHSSSCTTH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HHHHHHHcCccccc---ceeeehHHHH-HHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 8 7789987 221111 1112222222 36667778888888888777 999999998777666555544222221
Q ss_pred --CC-CCCC--chhHHHHHHhH---------------------------------------------HHH-----Hhcc-
Q 014832 223 --YG-DPSE--SKDLLTQFRGA---------------------------------------------AVA-----IASD- 246 (417)
Q Consensus 223 --~~-~~~~--~~~~~~~~~~~---------------------------------------------~~~-----~~~~- 246 (417)
++ ++++ .+++.++..+. +++ ..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 11 1111 11111110000 000 0111
Q ss_pred -chhHHHHHHHHHHHhHHHHHHHhhhccccCCC--CC-CChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHH-----
Q 014832 247 -EKIALLGAIQSLFEGSMYTFVFLWTPALSPND--EE-IPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQ----- 317 (417)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~----- 317 (417)
...+...+...+ ....+.....+.|.|.++. .+ .+.+.......+..+++.++.+++.||++|| +...
T Consensus 282 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r--~~~~~~~~~ 358 (491)
T 4aps_A 282 VVSYIPLFIAAVL-FWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN--QPSSPTKFA 358 (491)
T ss_dssp CTTHHHHHHHHHH-HHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-----CHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhcc--CCCchHHHH
Confidence 112222222222 2222223333556666552 22 3467777788888899999999999999987 3322
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhHHHHHHHHHHHhhhccchhHHHHHhhcCCcccccccccccccchh
Q 014832 318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (417)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (417)
.+..+..+++........... ++...+.+......++.+++.+...+..+++..|.+|++.|+++.|+.+...+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444444444444333221100 00111445667778888999998899999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 014832 398 IFVCVVLYNVCS 409 (417)
Q Consensus 398 ~~~~~~~~~~~~ 409 (417)
++..++......
T Consensus 433 ~g~~i~~~~~~~ 444 (491)
T 4aps_A 433 VGSALNAQLVTL 444 (491)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 999988877543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=4.6e-30 Score=238.72 Aligned_cols=325 Identities=13% Similarity=0.037 Sum_probs=235.8
Q ss_pred HHHHHhhhhhhhHHHHHHhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHHHHHH-HhcCchHHH
Q 014832 48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-TKHSPQYKI 126 (417)
Q Consensus 48 ~~~~~~~~~~~~l~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~ 126 (417)
+.........+.+|.+.+++|.|+.+.|++.+...++..+++++.|+++||+|||+++..+....+++.+ ..++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (375)
T 2gfp_A 11 VGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTV 90 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHH
Confidence 3333445557888889999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCchhHHH
Q 014832 127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (417)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~~~~~~gw~~~f~~ 203 (417)
+++.|++.|++.+...+.. ..++.|+ ++|++..+. ... +..+|..+++.+++.+.+.. +||+.|++
T Consensus 91 l~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~-~~~~g~~~~~~~~~~l~~~~--~~~~~~~~ 159 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMA-RTLPRDLYERTQLRHANSL-------LNM-GILVSPLLAPLIGGLLDTMW--NWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSSCCSHHHH-------HHH-HHHHHHHHHHHHHHHSSCHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHCCHHHHHHHHHH-------HHH-HHHHHHHhhHHHHHHHHHhc--cHHHHHHH
Confidence 9999999999999988888 6788887 444543322 222 25556677777777777777 99999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCchhHHHHHHhHHHHHhccchhHHHHHHHHHHHhHHHHHHHhhhccccCCCCCC--
Q 014832 204 AACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI-- 281 (417)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 281 (417)
.++..++..+......||++++++++++ .+++.++++|+|+++...+...+...... ....+.|.|.++..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 234 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIA-AFEACSGVLMGAVLGLSS 234 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCCccccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCH
Confidence 8888777666444466766544332211 23445677788887777666555444443 4556899998873333
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHH-HHHHHH--HHHHHhhccCCCCCCCCCcccchhHHHHH
Q 014832 282 -PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVV-SSVSLL--LPIVTSFLVAPSNVKSGGISFSGSLQLLG 357 (417)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (417)
+.+.......++.+++.++.+++.||.++ .+..+... ...+.. ....... . +.+...+.
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~ 297 (375)
T 2gfp_A 235 MTVSILFILPIPAAFFGAWFAGRPNKRFST----LMWQSVICCLLAGLLMWIPDWFGV--M-----------NVWTLLVP 297 (375)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH----HHHHHHHHHHHTSSSSSHHHHHHH--H-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcc--c-----------cHHHHHHH
Confidence 23566677778888888888888888643 22222222 111111 1111110 0 34556677
Q ss_pred HHHHHHhhhccchhHHHHHhhcCCcccccccccccccchhHHHHHHHHH
Q 014832 358 FCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYN 406 (417)
Q Consensus 358 ~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 406 (417)
.++.+++.+...+...++..|..| ++|+++.|+.+...+++..++...
T Consensus 298 ~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 788889999989999999999998 789999999888888777665543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=4.3e-26 Score=214.90 Aligned_cols=329 Identities=14% Similarity=0.055 Sum_probs=195.7
Q ss_pred HHHhhhhhhhHHH-HHHhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHHHHHH----HhcCchH
Q 014832 50 MAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI----TKHSPQY 124 (417)
Q Consensus 50 ~~~~~~~~~~l~~-l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~~----~~~~~~~ 124 (417)
....+...+++|. +.+++|.|+.+.|++.+...++..++++++|+++||+||||++..+....++... ..+.+..
T Consensus 20 ~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678875 4567999999999999999999999999999999999999999998877655322 1222211
Q ss_pred H-HHHHHHHHHHHHhhhhhhhHH---HHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCch
Q 014832 125 K-ILMIGRILGGIATSLLFSAFE---SWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199 (417)
Q Consensus 125 ~-~l~~~r~l~G~~~~~~~~~~~---~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~~~~~~gw~~ 199 (417)
. .+...+.+.|++.+...+... ..+..|. ++++...+. .. .+..+|..++|.+++.+.+ . +||.
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~-~~~~~g~~~~~~l~~~l~~-~--~~~~ 168 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-------AR-MFGCVGWALGASIVGIMFT-I--NNQF 168 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHH-------HS-SSTTTHHHHHHHHHHHHHH-H--CSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHH-------HH-HHHHHHHHHHHHHHHHHHH-h--chhH
Confidence 1 123445555554444333321 2233222 122211111 11 1244555667777777665 3 8999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCC--CCc-h-hHHHHHHhHHHHHhccchhHHHHHHHHHHHhHHHHHHHhhhcccc
Q 014832 200 PFDAAACFLAIGMVIILSSWTENYGDP--SES-K-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (417)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (417)
.|++.++..++..+......||++++. +++ + +.++...++.++++|+|+++...+...... ..+.....+.|.|+
T Consensus 169 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 247 (417)
T 2cfq_A 169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFF 247 (417)
T ss_dssp HHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999877665444443332223332111 110 0 001111234567788888776555433322 22223333566665
Q ss_pred CCCCCC------ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 014832 276 PNDEEI------PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF 349 (417)
Q Consensus 276 ~~~~~~------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
.+..+. ..+.......++.+++.++.+++.||+|+| +.+..+..+.++.........
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~l~~~~~~~~~~~~~~~~~~--------------- 310 (417)
T 2cfq_A 248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--NALLLAGTIMSVRIIGSSFAT--------------- 310 (417)
T ss_dssp HHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHTTCC---------------
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHhc---------------
Confidence 432221 124455566678888999999999999987 766666555554433332221
Q ss_pred chhHHHHHHHHHHHhhhccchhHHHHHhhcCCccccccccccc-ccchhHHHHHHHHHh
Q 014832 350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIPLNIFVCVVLYNV 407 (417)
Q Consensus 350 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~ 407 (417)
+.+..++...+.+++.+...+....+..|.+|++.|+++.++. +...+++..++....
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 3344555555566666666677788999999999999999984 777778777766543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=7.7e-24 Score=205.62 Aligned_cols=356 Identities=14% Similarity=0.146 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhHH-HHHHhcC------CCcchHHHHHHHHHHHHhhhhcccccccccc-CchHHHHHHHHH
Q 014832 40 NNYLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT 111 (417)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~-~l~~~~g------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~~~~~ 111 (417)
+......++..+......+.++ .+.+++| .|+.+.|++.+.+.++..+++++.|+++||+ |||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3333333344444433445555 4567899 9999999999999999999999999999999 999999999999
Q ss_pred HHHHHH-HhcCc-hHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014832 112 YILSCI-TKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (417)
Q Consensus 112 ~~~~~~-~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~ 186 (417)
.+++.+ +.+++ +++.+++.|++.|++.+...+.. .+++.|+ ++|+...+ .++.... +..+|..++|.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~----~~~~~~~-~~~~g~~~g~~~~ 168 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV-SSFMGDQFDQSNKSLAQK----AFDMFYF-TINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH-HHHHHHTCSTTTTTHHHH----HHHHHHH-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH-HHHHHHHcCccchHHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence 999999 99998 99999999999999999988888 6788888 33332221 2222222 3666778888888
Q ss_pred hhhhhhccCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCCch---hHH--------------HH--------------
Q 014832 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---DLL--------------TQ-------------- 235 (417)
Q Consensus 187 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~~-------------- 235 (417)
+.+.+.. |||++|++.++..++..+......++.++++++.+ +.. ++
T Consensus 169 ~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (524)
T 2xut_A 169 PLLLKNF--GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAA 246 (524)
T ss_dssp THHHHTS--CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc--cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhh
Confidence 8887777 99999999888776665554422222111110000 000 00
Q ss_pred --------------------------HHhHHHHH-----------hccchhHHHHHHHHHHHhHHHHHHHh---hhcccc
Q 014832 236 --------------------------FRGAAVAI-----------ASDEKIALLGAIQSLFEGSMYTFVFL---WTPALS 275 (417)
Q Consensus 236 --------------------------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 275 (417)
.+++++++ .++++...............+..... ..+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (524)
T 2xut_A 247 YALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA 326 (524)
T ss_dssp HTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHH
T ss_pred hhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhH
Confidence 00001000 01111111111111111111100010 111111
Q ss_pred CC-CCC--CChhHHHHHHHHHHHHHHHHHHHHH----hhcCCCcc--chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 014832 276 PN-DEE--IPHGFIFATFMLASMLGSSLASRLM----ARSPPRVE--SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (417)
Q Consensus 276 ~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (417)
.+ ..+ ...+.......++.+++..+.+++. ||.++|.+ +.+..+..+.+++.+......... ..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~ 400 (524)
T 2xut_A 327 NDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM------DGG 400 (524)
T ss_dssp HHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------TTT
T ss_pred HhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh------cCC
Confidence 11 111 1344444444444555555555443 44333211 233344444444433332221000 000
Q ss_pred cccchhHHHHHHHHHHHhhhccchhHHHHHhhcCCcccccccccccccchhHHHHHHHHHhcC
Q 014832 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVCS 409 (417)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 409 (417)
...+.+...+..++.+++.+...+..+++..|..|++.|++++|+.+...+++..++......
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011445666778888999998899999999999999999999999999999999988876543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=8.1e-12 Score=118.30 Aligned_cols=153 Identities=12% Similarity=0.037 Sum_probs=117.5
Q ss_pred hhhhHHHHHHh-cCCCcchHHHHHHHHHHHHhhhhcccccccccc--CchHHHHHHHHHHH-HHHH-HhcC--chHHHHH
Q 014832 56 QGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSCI-TKHS--PQYKILM 128 (417)
Q Consensus 56 ~~~~l~~l~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~--Grr~~~~~~~~~~~-~~~~-~~~~--~~~~~l~ 128 (417)
...+.|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.+ ..+. .+.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 35666655555 899999999999999999999999999999999 99999888877766 6666 6665 3677788
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhccCCCchhHHHHHHH
Q 014832 129 IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (417)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~-g~~l~~~~~~~~~~~~~~gw~~~f~~~~~~ 207 (417)
+..++.|++.+...+.. ..++.|. .+.+......++.... ..+ |..+++.+.+.+.+.. ||+..|++.++.
T Consensus 351 ~~~~~~g~~~~~~~~~~-~~~~~~~----~~~~~~g~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~ 422 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLI-GLHALEL----APKKAAGTAAGFTGLF-GYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGG 422 (451)
T ss_dssp HHHHHHHHHHTHHHHHH-HHHHHHT----SCTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHH-HHHHHHH----hchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHH
Confidence 88889999888877766 5677777 2222233355555555 445 7788888888888887 999999998887
Q ss_pred HHHHHHHHH
Q 014832 208 LAIGMVIIL 216 (417)
Q Consensus 208 ~~~~~~~~~ 216 (417)
.++..++..
T Consensus 423 ~~~~~~~~~ 431 (451)
T 1pw4_A 423 SILAVILLI 431 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666655
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.33 E-value=1.5e-10 Score=109.06 Aligned_cols=146 Identities=11% Similarity=0.026 Sum_probs=109.5
Q ss_pred hhhHHHH-H-HhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHH
Q 014832 57 GPYVYYL-Y-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-TKHSPQYKILMIGRIL 133 (417)
Q Consensus 57 ~~~l~~l-~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~l~~~r~l 133 (417)
..++|.+ . +.+|.++.+.++..+...++..++.++.|+++||+|||+++..+.++..++.+ ..+.++.+.+... ++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence 4566655 4 45599999999999999999999999999999999999999999999998888 8888887665544 88
Q ss_pred HHHHhhhhhhhHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-CchhHHHHHHHHHHHH
Q 014832 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-PVAPFDAAACFLAIGM 212 (417)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~~~~~~g-w~~~f~~~~~~~~~~~ 212 (417)
.|++.+...+.. ..+..|..++. .....+... . ..+|..++|.+.+.+.+.. | ++..|++.++..++..
T Consensus 357 ~g~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~-~-~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 357 CSAFMSIQYPTI-FSLGIKNLGQD-----TKYGSSFIV-M-TIIGGGIVTPVMGFVSDAA--GNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHTTHHHHH-HHHHHSSCGGG-----HHHHHHHHH-H-TTHHHHHHHHHHHHHHHHH--TSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhhcccc-----ccchhhHHH-H-HHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHH
Confidence 888888888877 55656651111 111222222 3 4477788888888888887 8 9999988765554444
Q ss_pred H
Q 014832 213 V 213 (417)
Q Consensus 213 ~ 213 (417)
+
T Consensus 427 ~ 427 (438)
T 3o7q_A 427 I 427 (438)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=2.7e-11 Score=113.64 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=108.5
Q ss_pred cchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014832 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-TKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (417)
Q Consensus 71 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (417)
..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+ .++.++.+.+++..++.+++.+...+.. ..+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC-FKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHH-HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 44567778888888888999999999999999999999888888877 8888888888888888888776665555 557
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014832 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (417)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 222 (417)
++|. .+.+.+....+.....+..+|..++|.+++.+.+.. |++..|.+.+++.++..++.+...||+
T Consensus 337 ~~~~----~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 337 ITSQ----FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHH----SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHH----CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 7776 333333334444333446677788888888888777 888899888888777776655444543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.03 E-value=2e-09 Score=103.11 Aligned_cols=154 Identities=8% Similarity=-0.123 Sum_probs=101.7
Q ss_pred hhhHHHHH-HhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHH-----HHHHHHHHHHH-HhcC--------
Q 014832 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-----TYCLTYILSCI-TKHS-------- 121 (417)
Q Consensus 57 ~~~l~~l~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~-----~~~~~~~~~~~-~~~~-------- 121 (417)
...+|... +.++.+..+.++..+...++..++.++.|++.||+|||+... .+..+.+++.+ ....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555444 456777677888888888889999999999999999986654 67777777666 5443
Q ss_pred -chHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCC
Q 014832 122 -PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (417)
Q Consensus 122 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~~~~~~~gw 197 (417)
.+.+.+.+.-++.|++.+...+.. ..++.|. ++|+...+. .... ..+|..+++.+.+.+.+. ++
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~-------~~~~-~~~g~~i~~~~~~~~~~~---~~ 450 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVG-LSVTTKLAPKAFNSQMMSM-------WFLS-SSVGSALNAQLVTLYNAK---SE 450 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHH-HHHHHHHTTTTCSSSSTHH-------HHHH-HHHHHHHHHHHGGGGGGS---ST
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHhcc---cH
Confidence 267778888899999998877777 5678777 445543332 2222 445556666666655443 67
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccc
Q 014832 198 VAPFDAAACFLAIGMVIILSSWTEN 222 (417)
Q Consensus 198 ~~~f~~~~~~~~~~~~~~~~~~~~~ 222 (417)
...|.+.+...++..++.+...++.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 451 VAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp THHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888777777666655444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.97 E-value=8.7e-09 Score=98.60 Aligned_cols=164 Identities=14% Similarity=0.060 Sum_probs=104.1
Q ss_pred hhhHHHHHHhcCCCcchHHHHHHHHHHHHhhhhccccccccccCchHHHHHHHHHHHHHHH-HhcC----chHHHHHHHH
Q 014832 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-TKHS----PQYKILMIGR 131 (417)
Q Consensus 57 ~~~l~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~~-~~~~----~~~~~l~~~r 131 (417)
..+.|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+ .+.. .+.+..++.-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 4556677788888887777777777788889999999999999999999988777776655 4322 1122222222
Q ss_pred HHHHHHhhh-hhhhHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhccCCCchhHHHH
Q 014832 132 ILGGIATSL-LFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL------VDSFSLGPVAPFDAA 204 (417)
Q Consensus 132 ~l~G~~~~~-~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~l~~~~~~~~------~~~~~~gw~~~f~~~ 204 (417)
++...+.+. ..+.. ..+.+|. .+.+.+....++.... ..++..+++.+.+.+ .... ++...|++.
T Consensus 377 ~~~~~~~~~~~~~~~-~~~~~E~----fPt~~R~~~~g~~~~~-~~~~~~i~~~~~p~l~~~~~~~~~~--~~~~~~~i~ 448 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVC-WVLLSEI----FPNAIRGKALAIAVAA-QWLANYFVSWTFPMMDKNSWLVAHF--HNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHTTTTHHH-HHHHHHS----SCTTTHHHHHHHHHHH-HHHHHHHHHTHHHHHCHHHHHHHHH--TTCHHHHHH
T ss_pred HHHHHHHHhHHHHHH-HHHHHHh----CCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHH
Confidence 222222222 22444 5678888 3334444455555444 334444444433322 2223 677888888
Q ss_pred HHHHHHHHHHHHhhccccCCCCCC
Q 014832 205 ACFLAIGMVIILSSWTENYGDPSE 228 (417)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ 228 (417)
++++++..++.++..||++++.-|
T Consensus 449 ~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHHHHHHHHheecCCCCCCHH
Confidence 888888888887789999887543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.79 E-value=2.2e-08 Score=92.15 Aligned_cols=124 Identities=6% Similarity=0.017 Sum_probs=100.9
Q ss_pred HHhhhccccCC-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 014832 267 VFLWTPALSPN-DEEI-PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (417)
Q Consensus 267 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (417)
.....|.+.++ +.+. +.+...+...++..++.++.|+++||+||| +.+..+..+..++.......+
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~---------- 86 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR--PVILVGMSIFMLATLVAVTTS---------- 86 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC--CCCHHHHHHHHHHHHHHHHHH----------
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHHHHHHHhc----------
Confidence 33346666555 3222 347777888899999999999999999998 888888888887777766665
Q ss_pred CCcccchhHHHHHHHHHHHhhhccchhHHHHHhhcCCcccccccccccccchhHHHHHHHHHh
Q 014832 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV 407 (417)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 407 (417)
+.+..++..++.|++.+...+...+++.|.+|+++|++++++.+...+++..++....
T Consensus 87 -----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 87 -----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6677888888999999999999999999999999999999999998888888777653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.70 E-value=6.4e-08 Score=93.41 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=101.1
Q ss_pred chhHHHHHHHHHHHhHHHHHHHhhhccccCCCCC------C---ChhHHHHHHHHHHHHHHHHHHHHHhhc-CCCccchH
Q 014832 247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE------I---PHGFIFATFMLASMLGSSLASRLMARS-PPRVESYM 316 (417)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~l 316 (417)
+.++.+.+...+.....+ ....+.|.|+++..+ . +.+.+.+...++..++.++.|+++||+ ||| +.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r--~~~ 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFY-GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY--NTI 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHH-HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH--HHH
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHH
Confidence 344444444333333333 344456776654333 2 457788888899999999999999999 988 777
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhHHHHHHHHHHHhhhccchhHHHHHhhcCCcccccccccc---cc
Q 014832 317 QIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF---FR 393 (417)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~ 393 (417)
..+..+..++.++...... +.+..++..++.|++.+...+...+++.|.+|+++|+++.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 154 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEH--------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFY 154 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSS--------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHH
Confidence 7777766666555444321 345667778889999999999999999999999999876665 77
Q ss_pred cchhHHHHHHHHH
Q 014832 394 IPLNIFVCVVLYN 406 (417)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (417)
...+++..++...
T Consensus 155 ~~~~~g~~~g~~~ 167 (524)
T 2xut_A 155 FTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7778877777654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=40.45 E-value=4.3 Score=19.30 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=10.1
Q ss_pred ccccccccCchHH
Q 014832 92 VGSLADKQGRKRA 104 (417)
Q Consensus 92 ~G~l~Dr~Grr~~ 104 (417)
.|.+..++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889998864
Done!