Query 014833
Match_columns 417
No_of_seqs 107 out of 115
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04966 OprB: Carbohydrate-se 100.0 1.1E-27 2.3E-32 240.1 24.4 318 28-417 1-371 (371)
2 PF04380 BMFP: Membrane fusoge 96.6 0.003 6.5E-08 51.7 4.6 49 9-65 31-79 (79)
3 PRK09980 ompL outer membrane p 94.6 0.051 1.1E-06 53.0 4.9 42 375-416 71-113 (230)
4 PF06178 KdgM: Oligogalacturon 93.8 0.076 1.6E-06 51.3 4.4 41 375-415 61-101 (218)
5 COG2960 Uncharacterized protei 92.4 0.23 4.9E-06 42.6 4.7 51 8-66 39-89 (103)
6 PF07642 DUF1597: Outer membra 91.3 17 0.00038 36.5 23.2 107 145-265 84-195 (344)
7 PF11854 DUF3374: Protein of u 90.9 2.1 4.6E-05 47.6 11.6 121 245-398 436-593 (637)
8 PF11853 DUF3373: Protein of u 90.7 4.1 8.9E-05 44.0 13.1 131 26-161 22-182 (489)
9 PF10082 DUF2320: Uncharacteri 86.6 32 0.0007 34.8 16.0 97 207-339 223-322 (381)
10 PF10805 DUF2730: Protein of u 83.5 2 4.3E-05 36.9 4.7 43 20-62 56-98 (106)
11 COG3937 Uncharacterized conser 81.4 1.2 2.6E-05 38.7 2.5 34 33-66 65-106 (108)
12 PF13600 DUF4140: N-terminal d 72.9 7 0.00015 32.8 4.8 41 23-63 64-104 (104)
13 PF05597 Phasin: Poly(hydroxya 71.5 3.5 7.5E-05 37.1 2.7 24 42-65 108-131 (132)
14 PF07642 DUF1597: Outer membra 70.3 38 0.00083 34.0 10.3 89 315-403 138-235 (344)
15 PF07889 DUF1664: Protein of u 70.3 7.1 0.00015 34.9 4.4 39 28-66 88-126 (126)
16 PF13568 OMP_b-brl_2: Outer me 67.5 20 0.00044 31.2 6.8 30 371-400 33-62 (173)
17 TIGR01837 PHA_granule_1 poly(h 64.9 5 0.00011 35.2 2.3 22 43-64 96-117 (118)
18 PF04508 Pox_A_type_inc: Viral 60.8 9 0.00019 24.6 2.3 19 44-62 2-20 (23)
19 PF03573 OprD: outer membrane 60.7 2.1E+02 0.0045 29.6 15.7 104 209-338 95-200 (391)
20 PRK02119 hypothetical protein; 58.5 6.5 0.00014 31.7 1.8 22 44-65 3-24 (73)
21 COG2960 Uncharacterized protei 58.2 7.7 0.00017 33.4 2.2 19 43-61 73-91 (103)
22 PF04899 MbeD_MobD: MbeD/MobD 55.8 18 0.0004 29.1 3.9 37 28-64 27-63 (70)
23 COG3659 OprB Carbohydrate-sele 55.5 6.8 0.00015 41.2 1.7 34 372-405 389-422 (439)
24 PRK14127 cell division protein 55.3 17 0.00036 31.8 3.8 37 29-65 37-73 (109)
25 PF09177 Syntaxin-6_N: Syntaxi 54.8 34 0.00074 28.5 5.6 58 5-65 11-68 (97)
26 TIGR02132 phaR_Bmeg polyhydrox 52.0 24 0.00052 33.5 4.6 48 15-63 59-127 (189)
27 PF06825 HSBP1: Heat shock fac 49.3 28 0.00062 26.7 3.8 32 33-64 11-42 (54)
28 PF14615 Rsa3: Ribosome-assemb 48.7 16 0.00036 27.2 2.4 21 33-53 6-26 (47)
29 TIGR02976 phageshock_pspB phag 48.0 24 0.00052 28.8 3.5 32 26-61 36-67 (75)
30 COG3165 Uncharacterized protei 47.5 18 0.0004 34.8 3.2 26 40-65 176-201 (204)
31 PF11854 DUF3374: Protein of u 47.5 1.5E+02 0.0033 33.3 10.7 141 198-347 167-319 (637)
32 PF00435 Spectrin: Spectrin re 46.9 45 0.00098 26.1 5.0 47 20-66 25-71 (105)
33 PRK00736 hypothetical protein; 46.6 9.7 0.00021 30.3 1.0 20 46-65 1-20 (68)
34 PF14739 DUF4472: Domain of un 46.0 26 0.00056 30.6 3.6 32 35-66 20-51 (108)
35 PF04859 DUF641: Plant protein 44.8 60 0.0013 29.3 5.8 32 33-64 95-129 (131)
36 PRK00295 hypothetical protein; 44.6 11 0.00024 30.0 1.0 20 46-65 1-20 (68)
37 PF06667 PspB: Phage shock pro 44.1 30 0.00066 28.3 3.5 33 25-61 35-67 (75)
38 PF06819 Arc_PepC: Archaeal Pe 42.4 21 0.00044 31.3 2.4 36 5-40 56-101 (110)
39 PF08898 DUF1843: Domain of un 41.8 51 0.0011 25.3 4.1 37 28-64 13-52 (53)
40 PF06825 HSBP1: Heat shock fac 41.8 32 0.00069 26.4 3.1 35 32-66 17-51 (54)
41 PRK02793 phi X174 lysis protei 41.7 18 0.0004 29.0 1.9 20 46-65 4-23 (72)
42 PF02996 Prefoldin: Prefoldin 41.2 50 0.0011 28.0 4.7 43 8-62 75-117 (120)
43 cd04766 HTH_HspR Helix-Turn-He 40.7 47 0.001 27.2 4.2 40 27-66 40-88 (91)
44 PF11059 DUF2860: Protein of u 40.5 34 0.00074 34.8 4.0 29 372-400 165-193 (297)
45 PF14197 Cep57_CLD_2: Centroso 40.4 27 0.00059 27.9 2.7 24 41-64 3-26 (69)
46 TIGR01834 PHA_synth_III_E poly 40.2 28 0.00061 35.8 3.4 44 15-65 275-318 (320)
47 TIGR02976 phageshock_pspB phag 40.1 26 0.00055 28.7 2.5 29 36-64 35-63 (75)
48 TIGR02231 conserved hypothetic 40.1 39 0.00084 36.5 4.6 44 23-66 65-108 (525)
49 PF10805 DUF2730: Protein of u 39.8 22 0.00048 30.5 2.2 44 14-66 22-65 (106)
50 PF09006 Surfac_D-trimer: Lung 38.8 28 0.0006 26.0 2.3 21 45-65 1-21 (46)
51 KOG2483 Upstream transcription 38.8 76 0.0016 31.3 6.0 34 33-66 109-142 (232)
52 cd00584 Prefoldin_alpha Prefol 38.3 68 0.0015 27.8 5.1 32 31-62 96-127 (129)
53 PRK00888 ftsB cell division pr 37.8 60 0.0013 27.9 4.6 57 30-88 28-90 (105)
54 PF10393 Matrilin_ccoil: Trime 37.3 41 0.00088 25.2 3.0 34 33-66 13-46 (47)
55 PRK09458 pspB phage shock prot 36.7 47 0.001 27.3 3.5 32 26-61 36-67 (75)
56 PRK04325 hypothetical protein; 36.4 24 0.00053 28.5 1.8 19 47-65 6-24 (74)
57 PF13591 MerR_2: MerR HTH fami 35.4 32 0.00068 28.1 2.4 33 31-63 45-83 (84)
58 PRK14127 cell division protein 35.3 64 0.0014 28.2 4.4 29 38-66 39-67 (109)
59 PF11108 Phage_glycop_gL: Vira 34.9 9 0.0002 33.6 -0.9 33 13-45 61-96 (111)
60 PRK10049 pgaA outer membrane p 34.7 6.1E+02 0.013 28.7 13.2 131 145-337 495-626 (765)
61 PF00038 Filament: Intermediat 34.4 42 0.00091 33.3 3.6 38 28-65 215-252 (312)
62 PF01166 TSC22: TSC-22/dip/bun 34.4 27 0.00059 27.3 1.7 34 26-66 11-44 (59)
63 PF11853 DUF3373: Protein of u 34.2 30 0.00064 37.6 2.6 27 39-66 21-47 (489)
64 TIGR03509 OMP_MtrB_PioB decahe 33.7 7.2E+02 0.016 27.8 23.0 115 150-267 298-415 (649)
65 COG2919 Septum formation initi 32.8 74 0.0016 27.7 4.4 35 31-65 52-86 (117)
66 PF06339 Ectoine_synth: Ectoin 32.7 51 0.0011 29.6 3.3 29 377-405 55-92 (126)
67 PRK04406 hypothetical protein; 32.5 31 0.00067 28.0 1.9 19 47-65 8-26 (75)
68 smart00150 SPEC Spectrin repea 32.4 1.4E+02 0.003 23.2 5.7 38 29-66 28-68 (101)
69 PRK09458 pspB phage shock prot 32.0 31 0.00068 28.3 1.8 30 35-64 34-63 (75)
70 PF04102 SlyX: SlyX; InterPro 31.6 32 0.00068 27.3 1.7 17 48-64 2-18 (69)
71 PF10046 BLOC1_2: Biogenesis o 31.2 74 0.0016 26.9 4.0 19 31-49 51-69 (99)
72 cd04776 HTH_GnyR Helix-Turn-He 30.4 1.6E+02 0.0035 25.4 6.2 9 8-16 58-66 (118)
73 TIGR03014 EpsL exopolysacchari 29.9 6.5E+02 0.014 26.1 15.8 138 208-400 218-358 (381)
74 PF10393 Matrilin_ccoil: Trime 29.4 89 0.0019 23.4 3.7 25 31-59 22-46 (47)
75 PF04338 DUF481: Protein of un 29.4 4.3E+02 0.0093 23.9 12.6 88 315-402 53-155 (210)
76 PRK00846 hypothetical protein; 28.3 40 0.00086 27.7 1.8 18 48-65 11-28 (77)
77 PRK10716 long-chain fatty acid 28.1 7.4E+02 0.016 26.2 12.1 25 314-338 151-175 (435)
78 PF11221 Med21: Subunit 21 of 27.9 1.5E+02 0.0033 26.6 5.7 57 5-64 76-136 (144)
79 TIGR03014 EpsL exopolysacchari 27.9 5.9E+02 0.013 26.4 10.8 86 314-400 215-315 (381)
80 TIGR02978 phageshock_pspC phag 27.4 53 0.0011 29.1 2.6 28 39-66 80-107 (121)
81 PRK14574 hmsH outer membrane p 27.2 5E+02 0.011 30.2 11.0 131 145-337 552-683 (822)
82 PF13747 DUF4164: Domain of un 27.1 1.4E+02 0.0031 24.9 5.0 52 6-59 15-69 (89)
83 KOG3429 Predicted peptidyl-tRN 26.7 96 0.0021 29.2 4.2 42 4-45 112-153 (172)
84 PTZ00478 Sec superfamily; Prov 26.7 40 0.00086 28.0 1.6 35 1-35 13-50 (81)
85 PF06013 WXG100: Proteins of 1 26.7 1.4E+02 0.003 22.7 4.7 35 30-64 5-39 (86)
86 PF06667 PspB: Phage shock pro 26.6 43 0.00093 27.4 1.7 30 35-64 34-63 (75)
87 PF12325 TMF_TATA_bd: TATA ele 26.1 61 0.0013 28.7 2.7 53 5-61 15-69 (120)
88 COG5476 Uncharacterized conser 25.8 85 0.0018 33.9 4.2 52 1-52 203-271 (488)
89 PF08203 RNA_polI_A14: Yeast R 25.8 47 0.001 27.3 1.8 12 31-42 58-69 (76)
90 PF03797 Autotransporter: Auto 25.6 3E+02 0.0064 25.6 7.6 23 374-396 123-145 (265)
91 PF11014 DUF2852: Protein of u 25.6 85 0.0019 27.8 3.5 25 32-56 78-105 (115)
92 PF14257 DUF4349: Domain of un 25.2 88 0.0019 30.5 4.0 39 32-73 146-196 (262)
93 PF09012 FeoC: FeoC like trans 24.8 28 0.0006 27.1 0.3 29 30-58 13-41 (69)
94 PF07793 DUF1631: Protein of u 24.8 1.1E+02 0.0024 34.4 5.1 56 6-66 427-482 (729)
95 PRK10265 chaperone-modulator p 24.7 98 0.0021 26.2 3.7 35 31-65 53-100 (101)
96 PF12699 phiKZ_IP: phiKZ-like 24.7 1.4E+02 0.003 30.7 5.5 47 31-81 74-120 (339)
97 PF00170 bZIP_1: bZIP transcri 24.4 1.6E+02 0.0035 22.5 4.6 35 30-64 27-61 (64)
98 COG1522 Lrp Transcriptional re 24.0 92 0.002 27.2 3.5 40 27-66 7-50 (154)
99 PF14584 DUF4446: Protein of u 23.9 1.5E+02 0.0033 27.2 5.0 49 11-66 28-76 (151)
100 PRK15365 type III secretion sy 23.8 1.4E+02 0.003 25.8 4.3 61 6-66 23-96 (107)
101 cd04769 HTH_MerR2 Helix-Turn-H 23.7 1.8E+02 0.0038 24.9 5.1 34 31-64 81-114 (116)
102 PRK03947 prefoldin subunit alp 23.7 1.6E+02 0.0035 25.9 5.0 36 31-66 103-138 (140)
103 PF05064 Nsp1_C: Nsp1-like C-t 23.6 79 0.0017 27.5 3.0 39 28-66 63-101 (116)
104 cd04786 HTH_MerR-like_sg7 Heli 23.6 2E+02 0.0044 25.4 5.6 56 8-66 60-115 (131)
105 PRK11239 hypothetical protein; 23.5 54 0.0012 31.9 2.1 19 46-64 186-204 (215)
106 PF11945 WASH_WAHD: WAHD domai 23.4 1.5E+02 0.0032 30.3 5.3 51 4-66 23-73 (297)
107 PF13942 Lipoprotein_20: YfhG 23.4 90 0.002 29.5 3.4 33 28-60 115-147 (179)
108 PRK11546 zraP zinc resistance 23.3 1.3E+02 0.0028 27.5 4.4 30 25-54 43-72 (143)
109 PRK10722 hypothetical protein; 22.8 80 0.0017 31.4 3.1 23 35-57 168-190 (247)
110 PF07028 DUF1319: Protein of u 22.7 1.3E+02 0.0027 27.1 4.0 35 30-64 47-81 (126)
111 KOG3684 Ca2+-activated K+ chan 22.5 1E+02 0.0023 33.3 4.1 39 28-66 419-457 (489)
112 PF05420 BCSC_C: Cellulose syn 22.4 1.4E+02 0.0029 31.1 4.8 27 314-340 298-324 (342)
113 TIGR00293 prefoldin, archaeal 22.4 1.8E+02 0.0039 25.0 5.0 41 8-60 84-124 (126)
114 PRK10716 long-chain fatty acid 21.9 3.5E+02 0.0075 28.7 7.9 105 156-267 294-406 (435)
115 KOG1547 Septin CDC10 and relat 21.3 78 0.0017 31.9 2.7 49 18-66 162-217 (336)
116 TIGR03843 conserved hypothetic 21.2 92 0.002 31.1 3.2 32 24-55 188-232 (253)
117 PF10779 XhlA: Haemolysin XhlA 21.2 1.1E+02 0.0023 24.3 3.0 24 42-65 12-35 (71)
118 PF10046 BLOC1_2: Biogenesis o 21.1 1.7E+02 0.0036 24.7 4.4 49 7-60 4-52 (99)
119 PF11351 DUF3154: Protein of u 21.0 83 0.0018 27.7 2.6 32 31-62 22-54 (123)
120 PF04568 IATP: Mitochondrial A 20.9 1.7E+02 0.0037 25.2 4.4 31 29-59 69-99 (100)
121 PHA03046 Hypothetical protein; 20.8 1.9E+02 0.004 26.3 4.7 36 31-66 93-128 (142)
122 PF04912 Dynamitin: Dynamitin 20.7 1.2E+02 0.0025 31.7 4.0 31 32-62 357-387 (388)
123 COG4064 MtrG Tetrahydromethano 20.7 95 0.0021 25.2 2.6 20 43-62 15-34 (75)
124 PF00957 Synaptobrevin: Synapt 20.5 1.4E+02 0.003 24.2 3.7 38 29-66 10-47 (89)
125 PF01389 OmpA_membrane: OmpA-l 20.4 2E+02 0.0043 26.8 5.1 66 153-226 83-150 (183)
No 1
>PF04966 OprB: Carbohydrate-selective porin, OprB family; InterPro: IPR007049 The carbohydrate-selective porin OprB family includes the Pseudomonas aeruginosa porin B, a substrate-selective channel for a variety of different sugars. This protein may facilitate diffusion of a variety of diverse compounds, but is probably restricted to carbohydrates, and does facilitate glucose fusion across the outer membrane.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane
Probab=99.96 E-value=1.1e-27 Score=240.13 Aligned_cols=318 Identities=16% Similarity=0.148 Sum_probs=215.9
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCCCCCCCcceeEEEEEEEEEeeEeecCCcccccccccccccce
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSKGSPFQEASTHVRAEVDVLGAVLMMGDIDQQHADALDRAEVR 107 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q~~~ffSTTTkL~Gevif~~a~~~~~~~~~~~~~~~~~~~~~ 107 (417)
|||++.++||+.||..||++|++|||.+|.|+.++|++| ||+|||+.|++++.+..+.+.+
T Consensus 1 r~~~~~~~~l~~~~~~dl~~l~G~~~g~~~~~~~~~~~g----~s~t~~~~~~~~~~~~~~~g~~--------------- 61 (371)
T PF04966_consen 1 REDLAYLGRLDLEFDLDLAKLRGRVDGLEFRVNELERNG----FSTTTKLSGGNVFSVQEIFGGG--------------- 61 (371)
T ss_pred CCccchhHhHHhHhhhhHHHhcCCCCCcEEEEEEeeecC----CCcccccccccccccccccccC---------------
Confidence 789999999999999999999999999999999999999 8999999999999988765542
Q ss_pred eeeEEEEEEEeccccc---ceEEEEEeeccCCCcC--c-------------CCCCCCceEEeEEEEEee---eCCcEEEE
Q 014833 108 TGIHTRFTFETTMRQN---DTLVADFVACQEGGKN--V-------------GNISGRSLSLAKLSYVAN---VGDWFYAI 166 (417)
Q Consensus 108 ~g~r~RL~f~TSFtGk---D~L~trL~agn~~~~~--~-------------~~~~gn~v~l~kL~Y~fp---v~d~~~~~ 166 (417)
-..++||+ ++||+++ |+|.+|+-..+....+ . +.+....+.++++.|.|| ++.++.+.
T Consensus 62 ~~~~~~L~-~~~~~q~~~~d~l~~~~G~~~~~~~f~~~~~~~~~~f~n~~f~~~~~~~~~~~~~~~~~P~~~~G~~~~~~ 140 (371)
T PF04966_consen 62 GNYRTRLN-ELSFTQKFFDDRLSLRLGKMNAGDDFDAYASDLGCQFLNSAFCGNPSLNVSIDSGWYTFPVSSWGARVRYQ 140 (371)
T ss_pred cccceeee-eEEEEEEecCCeEEEEEEEccCCcccccccCcccccceeecccCCCccccccccccccCCcccceEEEEEE
Confidence 14689999 9999999 9999999888875422 0 111123367999999999 55555555
Q ss_pred EEec----cccccCcccCCCCccCCCCcccccccCCCcccccCCeeEEEEEecCceEEEeeeeccCCCCCCCCCCCCCCc
Q 014833 167 AVPV----GAQCRDFDIARNYSHKAKGLTTISSLDPPLLSQHNGGAIGFTVRKSNVVASLAQSVSGLGVQLGSDGIGHCL 242 (417)
Q Consensus 167 v~~~----G~~~~D~~~t~Np~~~~~~l~~~S~fgnPiy~~~~G~Gig~~~~~~~~~~sl~yl~~~~g~p~~~~gf~g~y 242 (417)
+.+. ++-++......++. +..+.|. .....+.|+.+.++ ++|-.. ...++++|.|
T Consensus 141 ~~~~~~~~~gv~~~~~~~~~~~------~~~~g~~---~~~~~~~G~~~~~e-------~~~~~~-----~~~~~~~g~~ 199 (371)
T PF04966_consen 141 PTPNLYLQAGVYDSNPDAGNNA------GNSSGFD---FSPFGGDGVFLIWE-------LGYRPS-----FGNGGLPGNY 199 (371)
T ss_pred ecCceEEEEEEeecCCCccccc------cCcccee---ecccCCCceEEEEE-------EEeecc-----CCCCccCceE
Confidence 3321 11111111111110 0111110 00012233333332 333211 2345588999
Q ss_pred cceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccceeccccccCCccCCCCccCCCCccceeecceeEEEEEE
Q 014833 243 STFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLKQRNASENSVGASASSLGMNTQEIVSTGSIALKLET 322 (417)
Q Consensus 243 salgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~ 322 (417)
.+.+++...+.+++...+.|++.|..+.. + + . ........+ ..++++-.|
T Consensus 200 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~-----------------~---~~~~~~~~g-~~~~~~q~~ 249 (371)
T PF04966_consen 200 RLGAWYNTSPFDDLYSDLDYVPAYIQPAN-----G----G-----------------P---GRTHSGTYG-NYFGADQQL 249 (371)
T ss_pred EEEEEEecCcCcchhhccccceeeccccc-----C----C-----------------c---ccccCCceE-EEEEEEEEE
Confidence 99999999999999999999998842000 0 0 0 001123344 777888888
Q ss_pred eecCCeEEEEEEeEEeccc-eEEEEeEEee---c----CCCCcccceeeccee--cC-----C--------CCCcceEEE
Q 014833 323 ELDENAKVGGWFEMQNSNS-NLRWAVTISD---I----FNEDLEWGVTFSGMH--DG-----S--------KGWNQYQLE 379 (417)
Q Consensus 323 ~i~~~~~lgGW~g~~~~~~-iw~wavtla~---~----~e~dlG~g~~~gg~~--~~-----~--------d~dts~hiE 379 (417)
...+.+.+.||.++...+. .++|.+++++ . +++|.. |+-++... .+ . ..++.+|+|
T Consensus 250 ~~~~~l~~f~~~g~~~~~~~~~~~~~~~Gl~~~g~f~~rp~D~~-Gi~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~E 328 (371)
T PF04966_consen 250 WRSDGLGLFGRFGYADGDTNPISWSVSAGLVYKGPFPSRPGDSL-GIGFGWARLSDDLRDYQADAGQLAGGPQRDEYVIE 328 (371)
T ss_pred EeCCceEEEEEEeecCCCCceEEEEEEEeEEEECcccCCCCCeE-EEEEEeeeecCchhhhhhhhccccCCCCCccEEEE
Confidence 8888999999999887654 5555555553 2 566654 44443221 11 0 158999999
Q ss_pred EEEeeccCCceEEeeeeEEEEcCCC---CcceEE--EeeecCC
Q 014833 380 SFLDLCLGKRFSLKLGTSYVADGDA---QIPALM--LRCIWSL 417 (417)
Q Consensus 380 afYky~l~dnIsITPGli~i~np~~---~~~al~--~~~~w~~ 417 (417)
+||+|+|+|+|+|||++.||.||+. ..+|+| ||..+++
T Consensus 329 ~~Y~~~vt~~i~itP~lqyi~nP~~~~~~~~a~v~GlR~~~~F 371 (371)
T PF04966_consen 329 LYYRFQVTDNISITPDLQYIINPGGNPDNDDAWVVGLRTTFSF 371 (371)
T ss_pred EEEEEEcCCCEEEEeeEEEEECCCCCCCCCCcEEEEEEEEEEC
Confidence 9999999999999999999999996 446655 6776653
No 2
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=96.63 E-value=0.003 Score=51.66 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=38.6
Q ss_pred HhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 9 EKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..|++.+.+.+.+. ++++||+.++++ +.|+.+|.|+++||+|++.||+.
T Consensus 31 ~~~r~~l~~~l~kl-dlVtREEFd~q~-------~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 31 KNIRARLQSALSKL-DLVTREEFDAQK-------AVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHC-CCCcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455566666664 588899988876 56899999999999999999974
No 3
>PRK09980 ompL outer membrane porin L; Provisional
Probab=94.55 E-value=0.051 Score=53.00 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=34.9
Q ss_pred ceEEEEEEe-eccCCceEEeeeeEEEEcCCCCcceEEEeeecC
Q 014833 375 QYQLESFLD-LCLGKRFSLKLGTSYVADGDAQIPALMLRCIWS 416 (417)
Q Consensus 375 s~hiEafYk-y~l~dnIsITPGli~i~np~~~~~al~~~~~w~ 416 (417)
---+|+.|+ |+++|+++||||+.+..+++.-+=.-=||-.|.
T Consensus 71 ~~E~~~sY~~~k~~d~~tl~PG~~~~s~s~~~~Y~PyLr~~y~ 113 (230)
T PRK09980 71 YNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYK 113 (230)
T ss_pred ceEEEEEEEeEecCCCEEEecceEEEecCCCceEeeEEEEEEE
Confidence 446899998 599999999999999999988776666666654
No 4
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=93.81 E-value=0.076 Score=51.26 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=31.4
Q ss_pred ceEEEEEEeeccCCceEEeeeeEEEEcCCCCcceEEEeeec
Q 014833 375 QYQLESFLDLCLGKRFSLKLGTSYVADGDAQIPALMLRCIW 415 (417)
Q Consensus 375 s~hiEafYky~l~dnIsITPGli~i~np~~~~~al~~~~~w 415 (417)
--.+|+.|+|+|+||++|+||+.+..+.+.-+=.--||-.|
T Consensus 61 g~E~~~~y~~k~~d~~~l~PG~~~~~~s~~~~yrPylk~~Y 101 (218)
T PF06178_consen 61 GNEFEISYRYKLNDNFTLQPGFSLESNSDGTQYRPYLKLGY 101 (218)
T ss_dssp EEEEEEEE-EESSSSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeEEEEEEEEEcCCCEEEecceEEEECCCccEEeeEEEEEE
Confidence 34689999999999999999999888877665555555443
No 5
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.44 E-value=0.23 Score=42.59 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 8 VEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
=-+|++..++.|.+-+ +++||+.++.+.. |+.=|++.+.||+|+++||+..
T Consensus 39 E~~~r~~~q~~lnkLD-lVsREEFdvq~qv-------l~rtR~kl~~Leari~~LEarl 89 (103)
T COG2960 39 EKAFRAQLQRQLNKLD-LVSREEFDVQRQV-------LLRTREKLAALEARIEELEARL 89 (103)
T ss_pred HHHHHHHHHHHHhhhh-hhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555432 4455555543332 4555666667777777777665
No 6
>PF07642 DUF1597: Outer membrane protein family (DUF1597); InterPro: IPR011486 This is a family of proteins for which no function is known yet.
Probab=91.34 E-value=17 Score=36.49 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=71.5
Q ss_pred CCceEEeEEEEEeeeCCcEEEEEEe----ccccccCcccCCCCccCCCCcccccccCCCcccccCCeeEEEEEe-cCceE
Q 014833 145 GRSLSLAKLSYVANVGDWFYAIAVP----VGAQCRDFDIARNYSHKAKGLTTISSLDPPLLSQHNGGAIGFTVR-KSNVV 219 (417)
Q Consensus 145 gn~v~l~kL~Y~fpv~d~~~~~v~~----~G~~~~D~~~t~Np~~~~~~l~~~S~fgnPiy~~~~G~Gig~~~~-~~~~~ 219 (417)
.-.+.-.-+.|+ |+++.+++.++= +|.+ -+.+..|+..+ .+-...++ |.+. .|+-++|. .+++.
T Consensus 84 ~~~i~qAyv~~~-~~~~gl~v~~G~f~t~iGyE--~~~~~~N~~ys---~s~~~~~~-P~~~----tGv~~~y~~~d~~~ 152 (344)
T PF07642_consen 84 GFAIPQAYVSYK-PPGKGLSVKAGRFYTPIGYE--SIFAPDNFNYS---RSYLFNYG-PFTH----TGVRATYAFNDKWS 152 (344)
T ss_pred ccchhheEEEEE-ecCCCEEEEEeeeeCCCCee--ccCCCCCceEe---hhhhcccC-CcEE----EeEEEEEEcCCCEE
Confidence 456777778888 999999999853 4443 35566677653 12223343 6664 35778887 46788
Q ss_pred EEeeeeccCCCCCCCCCCCCCCccceEeEEEEeCCCceeeEEEeee
Q 014833 220 ASLAQSVSGLGVQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQ 265 (417)
Q Consensus 220 ~sl~yl~~~~g~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~ 265 (417)
+.++. ..++..- ..-.++.++..+|+.|.|.+++.+.+.+...
T Consensus 153 ~~~~v-~nG~d~~--~~~~n~~~~~~~~~~y~~~~~~~~~~~~~~g 195 (344)
T PF07642_consen 153 LMLGV-VNGWDTI--FFDNNGGPSFGGQLSYSPNGKLSLYLNYYYG 195 (344)
T ss_pred EEEEE-ECCcccc--cccCCCCcEEEEEEEEeeCCCeEEEEEEEeC
Confidence 88863 3332111 1124568899999999999999999888765
No 7
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=90.91 E-value=2.1 Score=47.57 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=72.3
Q ss_pred eEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccceeccccccCCccCCCCccCCCCccceeecceeEEEEEEee
Q 014833 245 FGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETEL 324 (417)
Q Consensus 245 lgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i 324 (417)
=+.+.|+|.+.+.|++++-..-. +.... .+| . .+... .+|++.++|++
T Consensus 436 ~l~~~~~~~~~l~l~~~~~~~~D-------dY~~t--~~G--------------------L--~~~~~-~~~~ld~~y~~ 483 (637)
T PF11854_consen 436 ELRANYSPFEDLSLSLSGRYAND-------DYDDT--DIG--------------------L--TESDD-YGYDLDASYQP 483 (637)
T ss_pred EEEeeeccccceEEeEEEEEccC-------CCCCc--ccc--------------------c--cccee-eeeeeeEEEEE
Confidence 35788999999888888754321 11110 011 1 22333 67999999999
Q ss_pred cCCeEEEEEEeEEeccc---------eEEEEeEEeecCCCCcccceeecceecC--------------------------
Q 014833 325 DENAKVGGWFEMQNSNS---------NLRWAVTISDIFNEDLEWGVTFSGMHDG-------------------------- 369 (417)
Q Consensus 325 ~~~~~lgGW~g~~~~~~---------iw~wavtla~~~e~dlG~g~~~gg~~~~-------------------------- 369 (417)
+|++.+.+|.++.+.+. .-.|-..+-+ +-.-+|-|+...|++.+
T Consensus 484 ~~~l~~~af~~~q~~~s~Q~gs~~~~~~~W~~~~~D-~~~~~G~G~~~~~l~~~kL~lg~dYsys~~~s~~~~~~~~~~~ 562 (637)
T PF11854_consen 484 SDDLSLYAFYNQQWIDSDQAGSQNFSTPDWTSDTED-KVTTVGAGFSYQGLMDDKLSLGLDYSYSDSDSDTDVTQGGSGP 562 (637)
T ss_pred CCCeEEEEEEEeEeehhhhccccCccCCCccccccc-eeEEEEeceEeecccCccEEEeeeEEEecCccceEeecccccC
Confidence 99999999999865421 2234333333 10123333333222100
Q ss_pred -CC-CCcceEEEEEEeeccCCceEEeeeeEE
Q 014833 370 -SK-GWNQYQLESFLDLCLGKRFSLKLGTSY 398 (417)
Q Consensus 370 -~d-~dts~hiEafYky~l~dnIsITPGli~ 398 (417)
+| .-+.-.||+|-+|+|++++++.=..+|
T Consensus 563 ~pd~~~~~h~l~~~~~y~ls~~~~lrl~y~y 593 (637)
T PF11854_consen 563 YPDYYSRQHNLNLYARYQLSKNMSLRLDYRY 593 (637)
T ss_pred CCCceeeEEEEEEEEEEEeCCCeEEEEEEEE
Confidence 12 223336999999999999998877654
No 8
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=90.75 E-value=4.1 Score=43.97 Aligned_cols=131 Identities=10% Similarity=0.108 Sum_probs=84.4
Q ss_pred CCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCCCCCCCcceeEEEEEEEEEeeEeecCCccc-------ccc
Q 014833 26 YSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSKGSPFQEASTHVRAEVDVLGAVLMMGDIDQ-------QHA 98 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q~~~ffSTTTkL~Gevif~~a~~~~~~~~~-------~~~ 98 (417)
+.-+|++.+|+ .||...||.+|+..++.|+.|+...|.|- -.--.|+.|+--+.+-..-..+... +..
T Consensus 22 a~~~~~~~~qk-ie~L~kql~~Lk~q~~~l~~~v~k~e~~s----~~d~lk~~~DfRt~~Dsi~yk~~~~~~~~~~~~~~ 96 (489)
T PF11853_consen 22 AMADDIDLLQK-IEALKKQLEELKAQQDDLNDRVDKVEKHS----AGDNLKFGGDFRTRYDSIQYKTVDYGQMMNPNQMV 96 (489)
T ss_pred hhhhhhHHHHH-HHHHHHHHHHHHHhhcccccccchhhHhh----hcCcEEEeeEEEEEEeccccccccccccccccCCC
Confidence 55778888884 46788999999999999999998888877 2344455555555443322221000 000
Q ss_pred cc-cccccceeeeEEEEEEEecccccceEEEEEeeccCCC-----------------cCc----CCCCCCceEEeEEEEE
Q 014833 99 DA-LDRAEVRTGIHTRFTFETTMRQNDTLVADFVACQEGG-----------------KNV----GNISGRSLSLAKLSYV 156 (417)
Q Consensus 99 ~~-~~~~~~~~g~r~RL~f~TSFtGkD~L~trL~agn~~~-----------------~~~----~~~~gn~v~l~kL~Y~ 156 (417)
+. ..+++.....|.||++..--+.+=....||..-..-. .++ ...+++.|.|++-+..
T Consensus 97 ~g~~~~Nd~l~TNRl~Lnm~ak~~dn~~f~grL~myK~fG~~~~~~~~~~~~~~~~~~~D~~~~~~psd~~LrV~rAYf~ 176 (489)
T PF11853_consen 97 PGYKYNNDSLYTNRLRLNMKAKATDNVSFTGRLSMYKAFGAASDSSGNQPFFANRSGNFDWTSGENPSDDTLRVDRAYFL 176 (489)
T ss_pred CCcCccccceeeeeeecccccccCCCeEEEEEEeeehhhCccccccCCCcccccccccccccccCCCCCCcEEEEEEEEE
Confidence 11 1234467788999999999888888889997744411 011 1245677888888776
Q ss_pred ee-eCC
Q 014833 157 AN-VGD 161 (417)
Q Consensus 157 fp-v~d 161 (417)
+. ++|
T Consensus 177 y~ni~d 182 (489)
T PF11853_consen 177 YKNIGD 182 (489)
T ss_pred eecCCC
Confidence 65 666
No 9
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=86.61 E-value=32 Score=34.83 Aligned_cols=97 Identities=9% Similarity=0.014 Sum_probs=61.5
Q ss_pred eeEEEEEec---CceEEEeeeeccCCCCCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCccccc
Q 014833 207 GAIGFTVRK---SNVVASLAQSVSGLGVQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPI 283 (417)
Q Consensus 207 ~Gig~~~~~---~~~~~sl~yl~~~~g~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~ 283 (417)
.-+|+.|.. -...+.+||......++. ..-|.| .+.=+.|.|+|+....+.|+.-+.+..+.. .
T Consensus 223 ~~~G~~~~~t~~~~g~~~~Gy~~~~~d~~~-~~d~~g-~~~~~~l~w~pt~~t~~~l~~~r~~~~~~~-----~------ 289 (381)
T PF10082_consen 223 VLAGVSWDLTGKTRGEAKVGYQRRDFDDPS-RRDFSG-PSWDASLTWSPTPKTTVTLSASRSIEESTD-----A------ 289 (381)
T ss_pred EEEEEEEcccCcEEEEEEEEEEEeeccCCC-ccCCCc-eEEEEEEEEeccCceEEEEEEEEEEcCccc-----C------
Confidence 346677762 256677888776643332 222443 333468899999999999999888743100 0
Q ss_pred ceeccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEec
Q 014833 284 GFLKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQNS 339 (417)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~~ 339 (417)
...-... ..+.++..|++.+++.+.+=++|.+.
T Consensus 290 ----------------------~~~~~~~-~~~~~~~~h~~~~~l~~~~~~~~~~~ 322 (381)
T PF10082_consen 290 ----------------------GGSYVRT-TSVSLGWTHQLTPRLSLSLSAGYENR 322 (381)
T ss_pred ----------------------CCcEEEE-EEEEEEEEEEeeeeEEEEEEEEEEEe
Confidence 0011222 66778899999999988887777654
No 10
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.54 E-value=2 Score=36.95 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=36.7
Q ss_pred cCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 20 HRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 20 ~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
..-+++|+++|+..|+-.-.|-..|+.+|+++++.+++.+..|
T Consensus 56 ~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 56 TKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999999998877765
No 11
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=81.40 E-value=1.2 Score=38.67 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHH--------HHhhhhHHHHHHhhhhhhhCC
Q 014833 33 ILKRLQRESFSEQ--------MKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 33 ~LkRLQ~EF~aEL--------atLr~RvD~LE~Rta~lEa~Q 66 (417)
.++|=-+|.-.++ ..|++|||.||++++.||+.+
T Consensus 65 K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 65 KIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455444544444 589999999999999999864
No 12
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=72.92 E-value=7 Score=32.78 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhh
Q 014833 23 QNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 23 ~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lE 63 (417)
++....+.++.|+.-.++...|++.++++.+.++++.++|+
T Consensus 64 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 64 EKESDSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566778999999999999999999999999999999885
No 13
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=71.48 E-value=3.5 Score=37.07 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=19.2
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 42 FSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 42 ~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..||..|..|||.|++++..|...
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457778888999999998888754
No 14
>PF07642 DUF1597: Outer membrane protein family (DUF1597); InterPro: IPR011486 This is a family of proteins for which no function is known yet.
Probab=70.28 E-value=38 Score=34.01 Aligned_cols=89 Identities=9% Similarity=0.049 Sum_probs=50.4
Q ss_pred eeEEEEEEeecCCeEEEEEE--eE---E-eccceEEEEeEEeecCCCCc--ccceeecceecCC-CCCcceEEEEEEeec
Q 014833 315 SIALKLETELDENAKVGGWF--EM---Q-NSNSNLRWAVTISDIFNEDL--EWGVTFSGMHDGS-KGWNQYQLESFLDLC 385 (417)
Q Consensus 315 s~g~q~~~~i~~~~~lgGW~--g~---~-~~~~iw~wavtla~~~e~dl--G~g~~~gg~~~~~-d~dts~hiEafYky~ 385 (417)
.-|++++|.+++++.+..++ |+ . +.+..+.....++..+.+.+ .+....|-.-... ...+.+++...++|+
T Consensus 138 ~tGv~~~y~~~d~~~~~~~v~nG~d~~~~~~n~~~~~~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~dl~~~~~ 217 (344)
T PF07642_consen 138 HTGVRATYAFNDKWSLMLGVVNGWDTIFFDNNGGPSFGGQLSYSPNGKLSLYLNYYYGPENPDGANNNNRFFYDLVASYK 217 (344)
T ss_pred EEeEEEEEEcCCCEEEEEEEECCcccccccCCCCcEEEEEEEEeeCCCeEEEEEEEeCCCCcccccCCceEEEEEEEEEE
Confidence 45899999999988886654 21 1 11112222222222121222 2222221110001 467788899999999
Q ss_pred cCCceEEeeeeEEEEcCC
Q 014833 386 LGKRFSLKLGTSYVADGD 403 (417)
Q Consensus 386 l~dnIsITPGli~i~np~ 403 (417)
++|+++++...-|....+
T Consensus 218 ~~~~~~l~~~~~y~~~~~ 235 (344)
T PF07642_consen 218 PTDKLTLGLEYDYGWQDN 235 (344)
T ss_pred cCCcEEEEEEEEEEEecC
Confidence 999999998887766543
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.28 E-value=7.1 Score=34.90 Aligned_cols=39 Identities=3% Similarity=0.011 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++++..+|+=-+++-.|+..+...|..||.++.++|.+|
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556666666666777788888888999999999999987
No 16
>PF13568 OMP_b-brl_2: Outer membrane protein beta-barrel domain
Probab=67.49 E-value=20 Score=31.21 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.2
Q ss_pred CCCcceEEEEEEeeccCCceEEeeeeEEEE
Q 014833 371 KGWNQYQLESFLDLCLGKRFSLKLGTSYVA 400 (417)
Q Consensus 371 d~dts~hiEafYky~l~dnIsITPGli~i~ 400 (417)
.....+++..+++|+++++++|+||+.|..
T Consensus 33 ~~~~g~~~g~~~~~~~~~~~~~~~gl~y~~ 62 (173)
T PF13568_consen 33 KPGIGFSIGLFFNYPLNNRFSVQTGLSYSQ 62 (173)
T ss_pred CccEeEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 356788999999999999999999998654
No 17
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=64.95 E-value=5 Score=35.16 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=19.0
Q ss_pred HHHHHhhhhHHHHHHhhhhhhh
Q 014833 43 SEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 43 aELatLr~RvD~LE~Rta~lEa 64 (417)
.|+..|+.|||.||+++..|+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5788899999999999998864
No 18
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=60.82 E-value=9 Score=24.56 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.8
Q ss_pred HHHHhhhhHHHHHHhhhhh
Q 014833 44 EQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 44 ELatLr~RvD~LE~Rta~l 62 (417)
|+-.||.|+..||+.++.-
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998763
No 19
>PF03573 OprD: outer membrane porin, OprD family; InterPro: IPR005318 This family contains bacterial outer membrane porins with serine protease activity []. The serine peptidase domain belongs to MEROPS peptidase family S43 (clan PA(S)). However many of these proteins are not peptidases and are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the S43 family. The putative role of these protein could be to bind ligands and to facilitate the diffusion through the outer membrane.; GO: 0015288 porin activity, 0006810 transport, 0016021 integral to membrane; PDB: 3T24_A 3SZD_B 2Y0K_A 3SZV_A 3JTY_D 3T0S_A 2Y0H_A 3SY9_C 3SYB_A 3SY7_A ....
Probab=60.74 E-value=2.1e+02 Score=29.56 Aligned_cols=104 Identities=7% Similarity=0.008 Sum_probs=59.3
Q ss_pred EEEEEecCceEEEeeeeccC-CC-CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCccccccee
Q 014833 209 IGFTVRKSNVVASLAQSVSG-LG-VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFL 286 (417)
Q Consensus 209 ig~~~~~~~~~~sl~yl~~~-~g-~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~ 286 (417)
+-+.++..+..+.+|..... +- .+.....++..|.. +++..+..+++.|.+.|+.++....... .. ++..
T Consensus 95 ~~lK~r~~~t~lk~G~q~~~tP~~~~~d~R~lP~tf~G-~~l~~~~~~~l~L~~g~~~k~~~r~~~~--~~----~~~~- 166 (391)
T PF03573_consen 95 AYLKYRYGKTELKYGRQQPNTPLLNSSDSRMLPNTFEG-ASLTSKDIDNLTLQAGYIDKFKGRNSSD--FE----DFST- 166 (391)
T ss_dssp EEEEEEETTEEEEEEEE--EETTEEE-SSSSS--EEEE-EEEEEEESTTEEEEEEEEEEEE-TT-SS---B----EEEE-
T ss_pred heEEeeeeccEEEEEEEeecccEEEcCCcccChhhcee-eeeeccccCCeEEEeeEeeeeecCCccc--cc----chhh-
Confidence 35666655667778855533 21 12233456777776 5899999999999999999986422210 00 1100
Q ss_pred ccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEe
Q 014833 287 KQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQN 338 (417)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~ 338 (417)
. .........-+-+.+.|+..+++++..|.++.+
T Consensus 167 -------------~-----~~~~~~~d~~~~~G~~y~~~~~l~~~~~~~~~~ 200 (391)
T PF03573_consen 167 -------------S-----YGNGGEIDGFYFLGASYKFNKNLTLSLWYYNLE 200 (391)
T ss_dssp -------------T-----TETCEEESEEEEEEEEEEESTTEEEEEEEEEET
T ss_pred -------------c-----cccCccCCcceEcceEeecCCCeEEEEEeeech
Confidence 0 001111213444678899999999999977653
No 20
>PRK02119 hypothetical protein; Provisional
Probab=58.45 E-value=6.5 Score=31.72 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHhhhhHHHHHHhhhhhhhC
Q 014833 44 EQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 44 ELatLr~RvD~LE~Rta~lEa~ 65 (417)
|+..+-.|++.||.|+|+.|+.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~t 24 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENL 24 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999864
No 21
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.24 E-value=7.7 Score=33.44 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=17.0
Q ss_pred HHHHHhhhhHHHHHHhhhh
Q 014833 43 SEQMKQRDRLDKVERLLSF 61 (417)
Q Consensus 43 aELatLr~RvD~LE~Rta~ 61 (417)
.+|+.|..|+..||+|++.
T Consensus 73 ~kl~~Leari~~LEarl~~ 91 (103)
T COG2960 73 EKLAALEARIEELEARLAS 91 (103)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999983
No 22
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.77 E-value=18 Score=29.13 Aligned_cols=37 Identities=5% Similarity=0.128 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
.+..+-||.-.++...|.++|+.+|++|..++..|..
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888999999999999999999999988754
No 23
>COG3659 OprB Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane]
Probab=55.47 E-value=6.8 Score=41.20 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=30.0
Q ss_pred CCcceEEEEEEeeccCCceEEeeeeEEEEcCCCC
Q 014833 372 GWNQYQLESFLDLCLGKRFSLKLGTSYVADGDAQ 405 (417)
Q Consensus 372 ~dts~hiEafYky~l~dnIsITPGli~i~np~~~ 405 (417)
+.--|-+|.+|.+.+.++|.|+|=+-||++|-..
T Consensus 389 ~~yEy~lElyy~~~l~p~l~lqP~LQYi~~PGg~ 422 (439)
T COG3659 389 PGYEYALELYYGVHLTPWLTLQPNLQYIKQPGGV 422 (439)
T ss_pred cchhhhhhheeeecccCcEEeccccEEeccCCCc
Confidence 3447899999999999999999999999999653
No 24
>PRK14127 cell division protein GpsB; Provisional
Probab=55.28 E-value=17 Score=31.80 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 29 NPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 29 ~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
+|++.|.+-..+...|++.|+.+++.++++++..+..
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3566666655556666666666666666666655444
No 25
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=54.84 E-value=34 Score=28.52 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=45.9
Q ss_pred hHHHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 5 TSAVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..-++++..++..+.+-..+.. ..+-++.+++|+...|.+|..-++.||.=+.--|.|
T Consensus 11 ~~sl~~l~~~~~~~~~~~~~~~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 11 QSSLDRLESLYRRWQRLRSDTS---SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcccCC---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777777766655543333 678899999999999999999999999999888877
No 26
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=52.03 E-value=24 Score=33.47 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=29.3
Q ss_pred hhhcccCCCCCCCCChHHHHHHH----------HHHhHHHHHHhhh-----------hHHHHHHhhhhhh
Q 014833 15 IDSLFHRSQNSYSRNPIEILKRL----------QRESFSEQMKQRD-----------RLDKVERLLSFYK 63 (417)
Q Consensus 15 ~~~~~~~~~~~~~r~dL~~LkRL----------Q~EF~aELatLr~-----------RvD~LE~Rta~lE 63 (417)
...+++ .-|.++|+|++.+-+| -+|++-|++-.++ +|-+||.|++.||
T Consensus 59 MekYLe-~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~ 127 (189)
T TIGR02132 59 TGNYLE-QVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLD 127 (189)
T ss_pred HHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHH
Confidence 344443 4688999998865433 1677777554433 6666666666554
No 27
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=49.30 E-value=28 Score=26.71 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
.|+.||.-|..==..+=+|+|....|+..||.
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~ 42 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLEK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45556655554334444444444444444444
No 28
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=48.72 E-value=16 Score=27.19 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHhhhhHH
Q 014833 33 ILKRLQRESFSEQMKQRDRLD 53 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD 53 (417)
-|+|+.+||.-||-+||..=|
T Consensus 6 yl~~~t~efgdDLd~lR~~~d 26 (47)
T PF14615_consen 6 YLQRLTDEFGDDLDELRKAPD 26 (47)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 489999999999999996543
No 29
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=47.98 E-value=24 Score=28.79 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhh
Q 014833 26 YSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSF 61 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~ 61 (417)
.+.+|-+.|+.| .....+|++||+.||+.+..
T Consensus 36 ls~~d~~~L~~L----~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 36 LSTDDQALLQEL----YAKADRLEERIDTLERILDA 67 (75)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcC
Confidence 455565555444 44556888999999988764
No 30
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.54 E-value=18 Score=34.79 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=24.1
Q ss_pred HhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 40 ESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 40 EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
-|+.|+..||.-+|.||+|+..||..
T Consensus 176 ~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 176 DFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999864
No 31
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=47.47 E-value=1.5e+02 Score=33.26 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCcccccCCeeEEEEEecCceEEEeeeeccCCCCCC----CCCCCCCC--ccceEeEEEEeCCC-ceeeEEEeeecCCCC
Q 014833 198 PPLLSQHNGGAIGFTVRKSNVVASLAQSVSGLGVQL----GSDGIGHC--LSTFGQVVCQLSRG-VNLSLMGLHQVPKSR 270 (417)
Q Consensus 198 nPiy~~~~G~Gig~~~~~~~~~~sl~yl~~~~g~p~----~~~gf~g~--ysalgQl~~~P~~~-~~lsltY~~~y~~~~ 270 (417)
-||=....--.+|+.|.++++.+.++|..+--.|.- -.+.|.-. =++.+|+..-|... -.+++++-...+ .
T Consensus 167 ePID~~T~~~~ag~~~~G~~w~~~~~Y~gS~F~N~~~~l~~~n~~~~~~G~~~~~~~al~PDN~ahq~~~sg~y~l~--~ 244 (637)
T PF11854_consen 167 EPIDYTTDQLNAGVSYSGDNWQLGLGYQGSFFRNDIDSLTWQNPFNPTFGAATYGQMALAPDNQAHQVSLSGQYNLP--R 244 (637)
T ss_pred cCccccccEEEEEEEEeCCceEEEEEEeEEEEEcCCCceeecCCCCcccccccccccccCCCchheEEEEEEEEecC--C
Confidence 455444556788999999999999999876321110 00111101 12227888888766 334444333221 0
Q ss_pred CCccCCCCcccccceec--cccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEeccc---eEEE
Q 014833 271 NHRVSLRPLTIPIGFLK--QRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQNSNS---NLRW 345 (417)
Q Consensus 271 ~~~~~~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~~~~---iw~w 345 (417)
..+++.++.+. ++.+-.........+......++.. -.+.+.++.|+.++++|.+=.-|.+.+. +|.|
T Consensus 245 ------t~~~~~~~~g~mtQdd~f~~~t~~~~lp~~sldG~VdT-~~~~l~~tsr~~~~l~l~a~y~Y~DrDNkt~~~~~ 317 (637)
T PF11854_consen 245 ------TRFSGRLSYGRMTQDDAFIPATIGPALPAQSLDGEVDT-LDANLKLTSRPTPDLRLTASYRYSDRDNKTPVWEY 317 (637)
T ss_pred ------cEEEEEEEEEEEecCccccccccccCCCccccCcEEEE-eeeeEEEEeeEcCCcEEEEEEEEeeccCCCchhhc
Confidence 01111111111 1111111000000011111133333 5667999999999999999999987643 5555
Q ss_pred Ee
Q 014833 346 AV 347 (417)
Q Consensus 346 av 347 (417)
.-
T Consensus 318 ~~ 319 (637)
T PF11854_consen 318 PQ 319 (637)
T ss_pred cc
Confidence 54
No 32
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=46.86 E-value=45 Score=26.10 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=36.8
Q ss_pred cCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 20 HRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 20 ~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
...+.+...++++.+.+=.++|..||...+.+++.|......|.+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~ 71 (105)
T PF00435_consen 25 SSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG 71 (105)
T ss_dssp CSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33343556667777777788999999999999999999998885554
No 33
>PRK00736 hypothetical protein; Provisional
Probab=46.59 E-value=9.7 Score=30.28 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHhhhhHHHHHHhhhhhhhC
Q 014833 46 MKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 46 atLr~RvD~LE~Rta~lEa~ 65 (417)
|.+-.|++.||.|+|+.|..
T Consensus 1 ~~~e~Ri~~LE~klafqe~t 20 (68)
T PRK00736 1 MDAEERLTELEIRVAEQEKT 20 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 45668999999999998864
No 34
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=45.95 E-value=26 Score=30.60 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 35 KRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 35 kRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
-||+|+..+|.=.|..+|=+||.|+-+||.+-
T Consensus 20 ~rL~Eq~EaE~FELk~~vL~lE~rvleLel~~ 51 (108)
T PF14739_consen 20 NRLREQHEAEKFELKNEVLRLENRVLELELHG 51 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999999999999999999987
No 35
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.76 E-value=60 Score=29.28 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.8
Q ss_pred HHHHHHHHhH---HHHHHhhhhHHHHHHhhhhhhh
Q 014833 33 ILKRLQRESF---SEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 33 ~LkRLQ~EF~---aELatLr~RvD~LE~Rta~lEa 64 (417)
+++|||.|-. +|++.||..++.+++.-..||.
T Consensus 95 ~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 95 VVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3788888764 7999999999999998888874
No 36
>PRK00295 hypothetical protein; Provisional
Probab=44.58 E-value=11 Score=29.99 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHhhhhHHHHHHhhhhhhhC
Q 014833 46 MKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 46 atLr~RvD~LE~Rta~lEa~ 65 (417)
|.+-.|++.||-|+|+.|+.
T Consensus 1 ~~~e~Ri~~LE~kla~qE~t 20 (68)
T PRK00295 1 MSLEERVTELESRQAFQDDT 20 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999864
No 37
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=44.07 E-value=30 Score=28.25 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhh
Q 014833 25 SYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSF 61 (417)
Q Consensus 25 ~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~ 61 (417)
-.+.+|.+.|+.|-+ .-.+|.+||+.||+.++.
T Consensus 35 gLs~~d~~~L~~L~~----~a~rm~eRI~tLE~ILda 67 (75)
T PF06667_consen 35 GLSEEDEQRLQELYE----QAERMEERIETLERILDA 67 (75)
T ss_pred CCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 345566655555544 456899999999998854
No 38
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=42.37 E-value=21 Score=31.34 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=25.4
Q ss_pred hHHHHhHHHHhhhcc----------cCCCCCCCCChHHHHHHHHHH
Q 014833 5 TSAVEKVKGFIDSLF----------HRSQNSYSRNPIEILKRLQRE 40 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~----------~~~~~~~~r~dL~~LkRLQ~E 40 (417)
++.++|+|.++..-- ..+.-=-++|||+.||||.+|
T Consensus 56 ~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~e 101 (110)
T PF06819_consen 56 SSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEE 101 (110)
T ss_pred ccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHc
Confidence 467899999854222 222334578999999999987
No 39
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=41.82 E-value=51 Score=25.33 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHhHHHHH---HhhhhHHHHHHhhhhhhh
Q 014833 28 RNPIEILKRLQRESFSEQM---KQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELa---tLr~RvD~LE~Rta~lEa 64 (417)
.-||+.+|-|-.+...-|+ .|+.=+++|...++.||.
T Consensus 13 sGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 13 SGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred cCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 4589999999888777666 567778888888888875
No 40
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=41.78 E-value=32 Score=26.44 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 32 EILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 32 ~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
...|.+..+...-+-....|+|.||+-++.|-.+-
T Consensus 17 ~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 17 DKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45788889999999999999999999999876553
No 41
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.71 E-value=18 Score=29.02 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHHhhhhhhhC
Q 014833 46 MKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 46 atLr~RvD~LE~Rta~lEa~ 65 (417)
+.+-.|++.||.|+|+.|+.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~t 23 (72)
T PRK02793 4 SSLEARLAELESRLAFQEIT 23 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999864
No 42
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=41.19 E-value=50 Score=27.96 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=36.0
Q ss_pred HHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 8 VEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
++++.+++. +| +..|++..++...+++.++.++..++..++.+
T Consensus 75 ~~eA~~~l~---~r---------~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 75 LEEAIEFLK---KR---------IKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHH---HH---------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHH---HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665 44 88999999999999999999999999988765
No 43
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=40.73 E-value=47 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=30.5
Q ss_pred CCChHH---HHHHHHH------HhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 27 SRNPIE---ILKRLQR------ESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 27 ~r~dL~---~LkRLQ~------EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
+.+|++ .+++|++ +-..+++.|.+|++.|+++++.|...+
T Consensus 40 ~~~dv~~l~~i~~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 40 SERDIERLRRIQRLTQELGVNLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445654 4556666 346788899999999999999998765
No 44
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.51 E-value=34 Score=34.82 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=26.1
Q ss_pred CCcceEEEEEEeeccCCceEEeeeeEEEE
Q 014833 372 GWNQYQLESFLDLCLGKRFSLKLGTSYVA 400 (417)
Q Consensus 372 ~dts~hiEafYky~l~dnIsITPGli~i~ 400 (417)
+..-+.+|+=|+++|++.+.|+|+++|..
T Consensus 165 d~~~~~~~~~y~~~ls~~~~L~P~l~Y~~ 193 (297)
T PF11059_consen 165 DGDYYYLKGSYRLPLSQTSFLTPSLNYTQ 193 (297)
T ss_pred cCceEEEEEEEEEEecCCcEEeeEEEEEE
Confidence 45677899999999999999999999876
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.42 E-value=27 Score=27.93 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.4
Q ss_pred hHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 41 SFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 41 F~aELatLr~RvD~LE~Rta~lEa 64 (417)
..+|.++||.|.|.++++++..+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~ 26 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEI 26 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999887664
No 46
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=40.22 E-value=28 Score=35.79 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=31.2
Q ss_pred hhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 15 IDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 15 ~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
+-...=+.=|.++|.||+.+.| .|..||-||..|++.++.||++
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~k-------rL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQ-------RIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhc
Confidence 4445556778999999876654 5556777777777777777754
No 47
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.11 E-value=26 Score=28.65 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 36 RLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 36 RLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
-|++|=...|..|-.+.++||.|+..||.
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999995
No 48
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.08 E-value=39 Score=36.46 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 23 QNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 23 ~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.....+++++.|++=-++...||+.++++.+.+|++.++|++.+
T Consensus 65 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 65 TSRPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677888888888888999999999999999999999988
No 49
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.82 E-value=22 Score=30.49 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=23.9
Q ss_pred HhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 14 FIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 14 ~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++-..+.++ .++++|++.|+ ..+.....|++.||.++..|-+++
T Consensus 22 ~~~~~l~~~--~a~~~~~~~l~-------~~~~~~~~Rl~~lE~~l~~LPt~~ 65 (106)
T PF10805_consen 22 IFWLWLRRT--YAKREDIEKLE-------ERLDEHDRRLQALETKLEHLPTRD 65 (106)
T ss_pred HHHHHHHHh--hccHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCCHH
Confidence 344444443 47788888873 223344555555555555554443
No 50
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=38.84 E-value=28 Score=25.99 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHhhhhhhhC
Q 014833 45 QMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 45 LatLr~RvD~LE~Rta~lEa~ 65 (417)
+++||.+|..||.++--|++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777654
No 51
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=38.84 E-value=76 Score=31.27 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
+|++=-.+.+.++..|+-....|++|++.|+.-+
T Consensus 109 ~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 109 SLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3344445677777788888888888888777443
No 52
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.29 E-value=68 Score=27.76 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
++.|++..++...+|..++..++.++..++.+
T Consensus 96 ~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 96 IEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999988763
No 53
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.76 E-value=60 Score=27.89 Aligned_cols=57 Identities=11% Similarity=-0.132 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCCCCCCCcce--eE----EEEEEEEEeeEe
Q 014833 30 PIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSKGSPFQEAS--TH----VRAEVDVLGAVL 88 (417)
Q Consensus 30 dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q~~~ffSTT--Tk----L~Gevif~~a~~ 88 (417)
.+..+++=.+|..+|+++|+.|.+.|++++..|++..- .-+.. -+ =.||++|.+...
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~d--yiEe~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQE--AIEERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH--HHHHHHHHHcCCCCCCCEEEEeCCC
Confidence 46667777777888888888888888888888877410 00100 01 158999876653
No 54
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=37.33 E-value=41 Score=25.17 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.|=.-|.--.+.|.+|-.++|.+.+|+.-||.++
T Consensus 13 slv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 13 SLVAFQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566667777778888888888888887653
No 55
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.71 E-value=47 Score=27.25 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=19.8
Q ss_pred CCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhh
Q 014833 26 YSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSF 61 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~ 61 (417)
-+.+|...|+.|-+ .-.++++|++.||+.+.-
T Consensus 36 Ls~~d~~~L~~L~~----~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 36 LSQEEQQRLAQLTE----KAERMRERIQALEAILDA 67 (75)
T ss_pred CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcc
Confidence 34555555555443 345788888888887653
No 56
>PRK04325 hypothetical protein; Provisional
Probab=36.36 E-value=24 Score=28.47 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.8
Q ss_pred HhhhhHHHHHHhhhhhhhC
Q 014833 47 KQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 47 tLr~RvD~LE~Rta~lEa~ 65 (417)
.+-.|++.||.|+||.|..
T Consensus 6 ~~e~Ri~~LE~klAfQE~t 24 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDL 24 (74)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4668999999999998864
No 57
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=35.42 E-value=32 Score=28.14 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHH------HHhhhhHHHHHHhhhhhh
Q 014833 31 IEILKRLQRESFSEQ------MKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 31 L~~LkRLQ~EF~aEL------atLr~RvD~LE~Rta~lE 63 (417)
++.+.||+++|...+ ..|-+||+.|++++..|+
T Consensus 45 l~~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 45 LRRIRRLHRDLGINLEGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566778888886554 468899999999998875
No 58
>PRK14127 cell division protein GpsB; Provisional
Probab=35.30 E-value=64 Score=28.18 Aligned_cols=29 Identities=3% Similarity=-0.105 Sum_probs=25.7
Q ss_pred HHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 38 QRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 38 Q~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
-+++..|+..|+.++..||.++++++.+.
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566899999999999999999999977
No 59
>PF11108 Phage_glycop_gL: Viral glycoprotein L; InterPro: IPR020175 Herpesviruses are enveloped by a lipid bilayer that contains at least a dozen glycoproteins. The virion surface glycoproteins mediate recognition of susceptible cells and promote fusion of the viral envelope with the cell membrane, leading to virus entry. No single glycoprotein associated with the virion membrane has been identified as the fusogen []. Glycoprotein L (gL) forms a non-covalently linked heterodimer with glycoprotein H (gH). This heterodimer is essential for virus-cell and cell-cell fusion since the association of gH and gL is necessary for correct localisation of gH to the virion or cell surface. gH anchoring the heterodimer to the plasma membrane through its transmembrane domain. gL lacks a transmembrane domain and is secreted from cells when expressed in the absence of gH [].; PDB: 3PHF_N.
Probab=34.90 E-value=9 Score=33.58 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHhhhcccCCCCCCCCCh---HHHHHHHHHHhHHHH
Q 014833 13 GFIDSLFHRSQNSYSRNP---IEILKRLQRESFSEQ 45 (417)
Q Consensus 13 ~~~~~~~~~~~~~~~r~d---L~~LkRLQ~EF~aEL 45 (417)
.|+...+.|.+.....|| ++.||+|+++|.+|+
T Consensus 61 SFllAvl~rl~~~~~~~~~~lln~L~~~~~~F~~~f 96 (111)
T PF11108_consen 61 SFLLAVLDRLPSNTPPEDLELLNHLQRLKDSFLEKF 96 (111)
T ss_dssp HHHHHHHHGGGGG--THHHHHHHHHHHHHTTSGGGG
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667666666676 556777777776554
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=34.72 E-value=6.1e+02 Score=28.71 Aligned_cols=131 Identities=9% Similarity=0.002 Sum_probs=77.8
Q ss_pred CCceEEeEEEEEeeeCCcEEEEEEeccccccCcccCCCCccCCCCcccccccCCCcccccCCeeEEEEEecCceEEEeee
Q 014833 145 GRSLSLAKLSYVANVGDWFYAIAVPVGAQCRDFDIARNYSHKAKGLTTISSLDPPLLSQHNGGAIGFTVRKSNVVASLAQ 224 (417)
Q Consensus 145 gn~v~l~kL~Y~fpv~d~~~~~v~~~G~~~~D~~~t~Np~~~~~~l~~~S~fgnPiy~~~~G~Gig~~~~~~~~~~sl~y 224 (417)
.+++.++--.|-=|+.|..++++..--+ .-+|.. | .+.++- .|+|+-|+...+.+.+.
T Consensus 495 ~~~~~~~~~~ys~~~~~~~r~f~~~~~~--------~~~~~~--~---------~~~~~~--~g~G~e~~~~~~~~e~~- 552 (765)
T PRK10049 495 KHDVDITTILYSPPLADNWRGFAGFGYA--------DGQFSE--G---------KGIVRD--WLAGVEWRSRDIWLEAE- 552 (765)
T ss_pred cCcCcceeEEecCccCCCeeEEeeecce--------eccCCC--C---------ceeEEE--EeeeeEEEecceeEEEE-
Confidence 5889999999999999999998853111 113221 1 111121 26888888666666553
Q ss_pred eccCCCCCCCCCC-CCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccceeccccccCCccCCCCccC
Q 014833 225 SVSGLGVQLGSDG-IGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLKQRNASENSVGASASSL 303 (417)
Q Consensus 225 l~~~~g~p~~~~g-f~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (417)
+. .... +.++ .++. .-+.|.|+|...+++.+-.-- -..|+ ++
T Consensus 553 ~~-~~~~--~~~~~~g~~----~~~~~~~nd~w~~~~~~~~~~------------~~~pl---ra--------------- 595 (765)
T PRK10049 553 LS-ERVF--GHEHKPGAR----LSGWYDFNDNWRIGGSLERLS------------HRTPL---RA--------------- 595 (765)
T ss_pred ee-cccc--CCCCCcccE----EEeeeccCCCeeeeceeecCC------------CCCCH---HH---------------
Confidence 22 1000 1111 2333 457899999988887664210 00121 00
Q ss_pred CCCccceeecceeEEEEEEeecCCeEEEEEEeEE
Q 014833 304 GMNTQEIVSTGSIALKLETELDENAKVGGWFEMQ 337 (417)
Q Consensus 304 ~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~ 337 (417)
....+.+ +++++.+.|+.+|+..++.=++.+
T Consensus 596 --~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~ 626 (765)
T PRK10049 596 --LKNGVTA-NGGQGYVRWYQNERREYGVSWAFS 626 (765)
T ss_pred --HHcCCcc-ccceEEEEEeEcceEEEEeeeeee
Confidence 0123445 999999999999999987766654
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.41 E-value=42 Score=33.28 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
++++..+++--++..+||.+|+.+.+.||.++..+|..
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 67888999999999999999999999999999998864
No 62
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.36 E-value=27 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 26 YSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
+-||+.++||- -++.|.+|+..||..-+.|+.+.
T Consensus 11 AVrEEVevLK~-------~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 11 AVREEVEVLKE-------QIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp T-TTSHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 55888888873 56677788888888888888766
No 63
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.20 E-value=30 Score=37.61 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=23.7
Q ss_pred HHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 39 RESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 39 ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
...++|+..++ ++|+|++++++||++|
T Consensus 21 ~a~~~~~~~~q-kie~L~kql~~Lk~q~ 47 (489)
T PF11853_consen 21 AAMADDIDLLQ-KIEALKKQLEELKAQQ 47 (489)
T ss_pred hhhhhhhHHHH-HHHHHHHHHHHHHHhh
Confidence 45577888888 9999999999999999
No 64
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=33.72 E-value=7.2e+02 Score=27.81 Aligned_cols=115 Identities=12% Similarity=0.063 Sum_probs=66.8
Q ss_pred EeEEEEEeeeCCcEEEEEEeccccccCcccCCCCcc-CCCCcccccccCCCcccc-cCCeeEEEEEec-CceEEEeeeec
Q 014833 150 LAKLSYVANVGDWFYAIAVPVGAQCRDFDIARNYSH-KAKGLTTISSLDPPLLSQ-HNGGAIGFTVRK-SNVVASLAQSV 226 (417)
Q Consensus 150 l~kL~Y~fpv~d~~~~~v~~~G~~~~D~~~t~Np~~-~~~~l~~~S~fgnPiy~~-~~G~Gig~~~~~-~~~~~sl~yl~ 226 (417)
--++.+++.++|++++.+.. ...|......+|. .+.+...++.-.++-|.. -.+..+.+.|+. +.+++.++|-.
T Consensus 298 ~~rl~l~~~~sd~ltl~l~~---~Y~d~d~~~~~y~~~~~~~~~~~~~~~~~~d~~~~~~sl~~dy~l~~~~tLt~G~d~ 374 (649)
T TIGR03509 298 NANLKITSRPSPDLRLTAAY---DYSDRDNQTPVYNVAGSGATNVNTATNRPYDKTKQKAELAADYRFTRSVKLTAGYDY 374 (649)
T ss_pred eeeEEEEeeecCCEEEEEEE---EeeccCCCCcceEeccccccccccccCCccccceeeceEEEEEEecCCeEEEeeEEE
Confidence 34566677788888877755 4444333333432 111122232212343433 357788888886 67888888655
Q ss_pred cCCCCCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecC
Q 014833 227 SGLGVQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVP 267 (417)
Q Consensus 227 ~~~g~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~ 267 (417)
..........--.-..+..+++.+++.+++.|.+.|-+...
T Consensus 375 ~~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~l~~g~~y~~r 415 (649)
T TIGR03509 375 KNDDRSYQDRQETDESTVWAKLRYRLNPGLSLNLKGSYSNR 415 (649)
T ss_pred eecccccccccceeeeeEEEEEEEeecCCEEEEEEEEecCC
Confidence 43221111111124567788999999999999999987753
No 65
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.85 E-value=74 Score=27.71 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
...+++--+.-.+|+.+|..|...||+.+..|++.
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444456789999999999999999999988
No 66
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=32.66 E-value=51 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.1
Q ss_pred EEEEEEeec---------cCCceEEeeeeEEEEcCCCC
Q 014833 377 QLESFLDLC---------LGKRFSLKLGTSYVADGDAQ 405 (417)
Q Consensus 377 hiEafYky~---------l~dnIsITPGli~i~np~~~ 405 (417)
|+||-|=.. -+.-..|+||.+|++|..++
T Consensus 55 HlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~ 92 (126)
T PF06339_consen 55 HLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDR 92 (126)
T ss_pred ceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCcc
Confidence 899988653 56778999999999998765
No 67
>PRK04406 hypothetical protein; Provisional
Probab=32.51 E-value=31 Score=28.02 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.3
Q ss_pred HhhhhHHHHHHhhhhhhhC
Q 014833 47 KQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 47 tLr~RvD~LE~Rta~lEa~ 65 (417)
.+-.|++.||.|+|+.|+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~t 26 (75)
T PRK04406 8 QLEERINDLECQLAFQEQT 26 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999874
No 68
>smart00150 SPEC Spectrin repeats.
Probab=32.36 E-value=1.4e+02 Score=23.19 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=28.8
Q ss_pred ChHHHHHHHHH---HhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 29 NPIEILKRLQR---ESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 29 ~dL~~LkRLQ~---EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.|++.++++++ +|..||.....+|+.|......|-...
T Consensus 28 ~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~ 68 (101)
T smart00150 28 KDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEG 68 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 46666666655 778999999999999988877766553
No 69
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.96 E-value=31 Score=28.26 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 35 KRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 35 kRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
+-|.+|=...|..|-++.+++|.|+..||+
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888899999999999999999996
No 70
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.61 E-value=32 Score=27.27 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.6
Q ss_pred hhhhHHHHHHhhhhhhh
Q 014833 48 QRDRLDKVERLLSFYKL 64 (417)
Q Consensus 48 Lr~RvD~LE~Rta~lEa 64 (417)
+-.|++.||.|+|++|+
T Consensus 2 le~Ri~~LE~~la~qe~ 18 (69)
T PF04102_consen 2 LEERIEELEIKLAFQED 18 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888888875
No 71
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.24 E-value=74 Score=26.86 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q 014833 31 IEILKRLQRESFSEQMKQR 49 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr 49 (417)
++.|+.+.+|+..-|.+|-
T Consensus 51 ~~~l~~k~~~l~~~l~~Id 69 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQID 69 (99)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 72
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.44 E-value=1.6e+02 Score=25.42 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=5.1
Q ss_pred HHhHHHHhh
Q 014833 8 VEKVKGFID 16 (417)
Q Consensus 8 ~~~~~~~~~ 16 (417)
|+.|+++++
T Consensus 58 L~~I~~~l~ 66 (118)
T cd04776 58 LEEIRELLD 66 (118)
T ss_pred HHHHHHHHH
Confidence 455566554
No 73
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=29.86 E-value=6.5e+02 Score=26.10 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=80.4
Q ss_pred eEEEEEe---cCceEEEeeeeccCCCCCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccc
Q 014833 208 AIGFTVR---KSNVVASLAQSVSGLGVQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIG 284 (417)
Q Consensus 208 Gig~~~~---~~~~~~sl~yl~~~~g~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g 284 (417)
.+|+.|. +..+.+.++|.--.-.+++ ..-|.| ++.-+++.|+|+....|.|..-+....+..
T Consensus 218 ~lg~~w~~tgkt~~~~~~gy~~k~~d~~~-~~Dfsg-~~~~~~~~w~pt~~t~l~l~~sr~~~~~~~------------- 282 (381)
T TIGR03014 218 ELRFDWAVTGKSKLQGSIGYVDREHDHLS-QRDFSG-VIGRLNADWMVTGKTSLNAAISRELANYQT------------- 282 (381)
T ss_pred eeceEEEecccEEEEEEEeEEeccccccc-cCCccc-eeEEEEEEEcccCcEEEEEEEEeccCCccc-------------
Confidence 4566666 2468888888775533332 222432 444578999999988888887776421100
Q ss_pred eeccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEeccceEEEEeEEeecCCCCcccceeec
Q 014833 285 FLKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQNSNSNLRWAVTISDIFNEDLEWGVTFS 364 (417)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~~~~iw~wavtla~~~e~dlG~g~~~g 364 (417)
....-... ..|++...|++.+++.+.+=+.|.+.+ |. ++ .+.
T Consensus 283 --------------------~~~~y~~~-~~~~l~~~~~~~~~v~~~~~~~y~~~d----Y~--------g~-----~~~ 324 (381)
T TIGR03014 283 --------------------VTSSYYRN-RGTSIGPTWQATSKIAVRGRLDYEERD----FE--------GD-----PLV 324 (381)
T ss_pred --------------------cccceEEE-EEEEEeeEeeccceEEEEEEEEEEEee----cc--------Cc-----ccc
Confidence 00011222 678899999999999887777776543 20 11 111
Q ss_pred ceecCCCCCcceEEEEEEeeccCCceEEeeeeEEEE
Q 014833 365 GMHDGSKGWNQYQLESFLDLCLGKRFSLKLGTSYVA 400 (417)
Q Consensus 365 g~~~~~d~dts~hiEafYky~l~dnIsITPGli~i~ 400 (417)
+....+|....+.+. ..|++.+.+.|..++-+.-
T Consensus 325 ~~~~R~D~~~~~~~~--~~Y~~~~~~~~~l~~~~~~ 358 (381)
T TIGR03014 325 GPPARSDRTRSGSLS--LDWSPVRAVRISAAFQREK 358 (381)
T ss_pred CCCccccceEEEEEE--EEEEEcceEEEEEEEEEEe
Confidence 222234444444444 4566888887777765543
No 74
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=29.42 E-value=89 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhh
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLL 59 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rt 59 (417)
.+.||+|.+- |..+-.|++.||.|+
T Consensus 22 ~~~lq~Lt~k----L~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 22 TSALQSLTQK----LDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 3567777753 888999999999985
No 75
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=29.41 E-value=4.3e+02 Score=23.89 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=53.7
Q ss_pred eeEEEEEEeecCCeEEEEEEeEEeccc-----eEEEEeEEee--cCCCCcccceeeccee-------c-CCCCCcceEEE
Q 014833 315 SIALKLETELDENAKVGGWFEMQNSNS-----NLRWAVTISD--IFNEDLEWGVTFSGMH-------D-GSKGWNQYQLE 379 (417)
Q Consensus 315 s~g~q~~~~i~~~~~lgGW~g~~~~~~-----iw~wavtla~--~~e~dlG~g~~~gg~~-------~-~~d~dts~hiE 379 (417)
...++.++.+++++-+-+-..|..... -...++++.. ...++.-+.+.+|-.. . .........+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~G~Gy~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 132 (210)
T PF04338_consen 53 RASLRYDYFLSERWYLFGFARYERDRFQGIDYRYTLGAGLGYRLINTDRHKLSVEAGPGYRYEDYTDGDDDENSPAARFG 132 (210)
T ss_pred EEEEEEEEEcCCCEEEEEEEEEEEcccCCeeEEEEEEeEeeEEEEECCCEEEEEEECCcEEEEEecccCCceeEEEEEEE
Confidence 345777888889988888888775432 2334444442 3334444444444221 1 11233455677
Q ss_pred EEEeeccCCceEEeeeeEEEEcC
Q 014833 380 SFLDLCLGKRFSLKLGTSYVADG 402 (417)
Q Consensus 380 afYky~l~dnIsITPGli~i~np 402 (417)
.-|+++++++++++.-+.+..+.
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~ 155 (210)
T PF04338_consen 133 LDYRWKISDNLSLTQTLSYQPSL 155 (210)
T ss_pred EEEEEEcCCCEEEEEEEEEEEee
Confidence 77888888888888888887744
No 76
>PRK00846 hypothetical protein; Provisional
Probab=28.33 E-value=40 Score=27.72 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.0
Q ss_pred hhhhHHHHHHhhhhhhhC
Q 014833 48 QRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 48 Lr~RvD~LE~Rta~lEa~ 65 (417)
+-.|++.||.|+|+.|+.
T Consensus 11 le~Ri~~LE~rlAfQe~t 28 (77)
T PRK00846 11 LEARLVELETRLSFQEQA 28 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 458999999999998864
No 77
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=28.12 E-value=7.4e+02 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=19.6
Q ss_pred ceeEEEEEEeecCCeEEEEEEeEEe
Q 014833 314 GSIALKLETELDENAKVGGWFEMQN 338 (417)
Q Consensus 314 ns~g~q~~~~i~~~~~lgGW~g~~~ 338 (417)
-.+...+.||++|++.||+=+.+..
T Consensus 151 ~~~~Psvayki~d~lSiG~G~~~~y 175 (435)
T PRK10716 151 MNLNLSGAYRLNNAFSFGLGFNAVY 175 (435)
T ss_pred EEEeEEEEEEcCCcEEEEEeEEEEE
Confidence 5677888899999999998554433
No 78
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.94 E-value=1.5e+02 Score=26.62 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=35.1
Q ss_pred hHHHHhHHHH---hhhcccCCCCCCCC-ChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 5 TSAVEKVKGF---IDSLFHRSQNSYSR-NPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~r-~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
..++-|.|.+ |+++=+ -+ .+. +-++.|++|++|-..-=..|+.-|+.-|..+..++.
T Consensus 76 ~dIi~kakqIe~LIdsLPg-~~--~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 76 TDIIRKAKQIEYLIDSLPG-IE--VSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHSTT-SS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455565555 664422 22 223 337899999998877666777777777766666543
No 79
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=27.90 E-value=5.9e+02 Score=26.40 Aligned_cols=86 Identities=7% Similarity=-0.001 Sum_probs=53.0
Q ss_pred ceeEEEEEEeecCCeEEEEEEeEEecc---c------eEEEEeEEeecC-CCCcccceeecceecCCC-CCcce----EE
Q 014833 314 GSIALKLETELDENAKVGGWFEMQNSN---S------NLRWAVTISDIF-NEDLEWGVTFSGMHDGSK-GWNQY----QL 378 (417)
Q Consensus 314 ns~g~q~~~~i~~~~~lgGW~g~~~~~---~------iw~wavtla~~~-e~dlG~g~~~gg~~~~~d-~dts~----hi 378 (417)
.-+.+.++|+++.|.++.+=+||.... . -++|.+.+...+ ....- .+.+..-+...+ ...+| .+
T Consensus 215 ~~~~lg~~w~~tgkt~~~~~~gy~~k~~d~~~~~Dfsg~~~~~~~~w~pt~~t~l-~l~~sr~~~~~~~~~~~y~~~~~~ 293 (381)
T TIGR03014 215 TEHELRFDWAVTGKSKLQGSIGYVDREHDHLSQRDFSGVIGRLNADWMVTGKTSL-NAAISRELANYQTVTSSYYRNRGT 293 (381)
T ss_pred eeeeeceEEEecccEEEEEEEeEEeccccccccCCccceeEEEEEEEcccCcEEE-EEEEEeccCCccccccceEEEEEE
Confidence 445677789999999999999997532 1 678888888621 11111 122222122111 13334 35
Q ss_pred EEEEeeccCCceEEeeeeEEEE
Q 014833 379 ESFLDLCLGKRFSLKLGTSYVA 400 (417)
Q Consensus 379 EafYky~l~dnIsITPGli~i~ 400 (417)
.+=+.|+++++|+++=|+-|-.
T Consensus 294 ~l~~~~~~~~~v~~~~~~~y~~ 315 (381)
T TIGR03014 294 SIGPTWQATSKIAVRGRLDYEE 315 (381)
T ss_pred EEeeEeeccceEEEEEEEEEEE
Confidence 5566678899999999986554
No 80
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=27.39 E-value=53 Score=29.13 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.0
Q ss_pred HHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 39 RESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 39 ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
+.-.+-|..++.|.+.+|+|+..+|++=
T Consensus 80 ~~~~~~l~~~~~~~~~~e~Rl~~mE~yV 107 (121)
T TIGR02978 80 QSPRQALREVKREFRDLERRLRNMERYV 107 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778999999999999999999876
No 81
>PRK14574 hmsH outer membrane protein; Provisional
Probab=27.25 E-value=5e+02 Score=30.15 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=73.9
Q ss_pred CCceEEeEEEEEeeeCCcEEEEEEeccccccCcccCCCCccCCCCcccccccCCCcccccCCeeEEEEEecCceEEEeee
Q 014833 145 GRSLSLAKLSYVANVGDWFYAIAVPVGAQCRDFDIARNYSHKAKGLTTISSLDPPLLSQHNGGAIGFTVRKSNVVASLAQ 224 (417)
Q Consensus 145 gn~v~l~kL~Y~fpv~d~~~~~v~~~G~~~~D~~~t~Np~~~~~~l~~~S~fgnPiy~~~~G~Gig~~~~~~~~~~sl~y 224 (417)
.++..++.-.|-=|+.|..++.+...-.. -+|..+.+ .+|+ -|.|++++++...+.+-+.
T Consensus 552 ~~d~~~~~~lySpp~~d~~R~F~~~~~~~--------~~f~~~~~---~~r~--------~~~G~e~~~r~~~~~~e~~- 611 (822)
T PRK14574 552 NKDYGVETLLYSPPIAENWRVFGGGSYNN--------GQFEEGTG---ISRI--------LRLGGEWTSRDHWVEGEIS- 611 (822)
T ss_pred CCccceeeEEecCccCCCeeEEEEeccee--------cccCCCCc---eeee--------eeccceEEecCceEEEEee-
Confidence 47899999999999999999988552211 13221111 1221 1445666666544433221
Q ss_pred eccCCCCCCCCCC-CCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccceeccccccCCccCCCCccC
Q 014833 225 SVSGLGVQLGSDG-IGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLKQRNASENSVGASASSL 303 (417)
Q Consensus 225 l~~~~g~p~~~~g-f~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (417)
-...| .++ .++. +.+.|.|+|...+++.+-.- . ...|+ ++
T Consensus 612 -~~~~g----~g~k~g~r----~~~~~~~nD~W~~~~~~~~~-~-----------~~tPl---rA--------------- 652 (822)
T PRK14574 612 -NQNYG----NGNKVGAR----LSTWYDLNDHWRVGGQVERL-A-----------KDTPL---RA--------------- 652 (822)
T ss_pred -hhhcC----CCCCcCce----EEEEecCCCceeeeeeeecC-C-----------CCCCH---HH---------------
Confidence 01111 111 1222 24459999999988776421 0 01121 00
Q ss_pred CCCccceeecceeEEEEEEeecCCeEEEEEEeEE
Q 014833 304 GMNTQEIVSTGSIALKLETELDENAKVGGWFEMQ 337 (417)
Q Consensus 304 ~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~ 337 (417)
....+.+ +++++.+.|+-+|+..++.=++.+
T Consensus 653 --~~~gv~~-~~~~~~~~yr~~e~r~~~~~~~~~ 683 (822)
T PRK14574 653 --LKNKVTA-NSASAYVFWKADDKRDAELSVTPS 683 (822)
T ss_pred --HHcCCcc-eecceEEEEEEccceEEEeeeeec
Confidence 0123445 999999999999999988766653
No 82
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.14 E-value=1.4e+02 Score=24.88 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=22.5
Q ss_pred HHHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHH---hHHHHHHhhhhHHHHHHhh
Q 014833 6 SAVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRE---SFSEQMKQRDRLDKVERLL 59 (417)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~E---F~aELatLr~RvD~LE~Rt 59 (417)
.++|++..-|+..+.+-... .+--+-+|+|+.+ .+.||.+...|.++||.-.
T Consensus 15 ~aid~LE~~v~~r~~~~~~~--~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKR--DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555565333332211 1112233444443 5555555555555555433
No 83
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=26.74 E-value=96 Score=29.17 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=32.3
Q ss_pred hhHHHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHH
Q 014833 4 VTSAVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQ 45 (417)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aEL 45 (417)
++-+|||+..+|...---++-+++.|+++++.+++++.-.|=
T Consensus 112 iaDcleKlr~~I~~~~~~~~~~~teE~~kk~r~~~e~an~eR 153 (172)
T KOG3429|consen 112 IADCLEKLRDIIRAAEQTPPVDPTEETIKKIRIRKEKANRER 153 (172)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456899999997754444333789999999999999987663
No 84
>PTZ00478 Sec superfamily; Provisional
Probab=26.70 E-value=40 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=25.3
Q ss_pred CchhhHHHHhHHHHh---hhcccCCCCCCCCChHHHHH
Q 014833 1 MEAVTSAVEKVKGFI---DSLFHRSQNSYSRNPIEILK 35 (417)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~dL~~Lk 35 (417)
|||+..+++.+++|+ ..++.|+..|.++|=+.+.|
T Consensus 13 m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiak 50 (81)
T PTZ00478 13 SNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAY 50 (81)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 899999999999993 34567777776666444443
No 85
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=26.66 E-value=1.4e+02 Score=22.68 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 30 PIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 30 dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
|.+.|+++...+..-...|+..++.|+..+..+++
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~ 39 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQA 39 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888888888888888888743
No 86
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.62 E-value=43 Score=27.39 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 35 KRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 35 kRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
+.|.+|=...|..|-.+.++||.|+..||.
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777789999999999999999999995
No 87
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.07 E-value=61 Score=28.69 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=36.5
Q ss_pred hHHHHhHHHHhhhcccCCC--CCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhh
Q 014833 5 TSAVEKVKGFIDSLFHRSQ--NSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSF 61 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~--~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~ 61 (417)
...|+|+..-|. +.+ -...++.++.|.+=.++...||.+|..+.|.+++..+.
T Consensus 15 ~~~ve~L~s~lr----~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~ 69 (120)
T PF12325_consen 15 VQLVERLQSQLR----RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE 69 (120)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776653 221 23456778888888899999999998888877554433
No 88
>COG5476 Uncharacterized conserved protein [Function unknown]
Probab=25.83 E-value=85 Score=33.86 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=39.7
Q ss_pred CchhhHHHHhHHHH-----------hhhcc----cCCCC--CCCCChHHHHHHHHHHhHHHHHHhhhhH
Q 014833 1 MEAVTSAVEKVKGF-----------IDSLF----HRSQN--SYSRNPIEILKRLQRESFSEQMKQRDRL 52 (417)
Q Consensus 1 ~~~~~~~~~~~~~~-----------~~~~~----~~~~~--~~~r~dL~~LkRLQ~EF~aELatLr~Rv 52 (417)
|||+.+.+|++|++ +-+|- .++.. .++-+|-++..+|.+|+..||-..|++-
T Consensus 203 ~eP~rSl~~~L~a~e~~~Gilsvs~~~GF~~aD~pe~g~~lVvt~~D~~~~~a~A~~l~rel~~~r~~~ 271 (488)
T COG5476 203 REPMRSLYDRLKAQEARDGILSVSVAHGFPAADVPEMGTILVVTGNDKAAAAALAEELGRELLAARGAF 271 (488)
T ss_pred cchHHHHHHHHHhhhccCccEEEEeeccccccCccCCccEEEEeCCcHHHHHHHHHHHHHHHHhhcccc
Confidence 79999999999988 21221 12222 4567888999999999999999999873
No 89
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=25.81 E-value=47 Score=27.31 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhH
Q 014833 31 IEILKRLQRESF 42 (417)
Q Consensus 31 L~~LkRLQ~EF~ 42 (417)
|.-|||+||+|.
T Consensus 58 LSQLKRiQRdlr 69 (76)
T PF08203_consen 58 LSQLKRIQRDLR 69 (76)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC
Confidence 788999999984
No 90
>PF03797 Autotransporter: Autotransporter beta-domain; InterPro: IPR005546 Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease []. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs []. In those proteins where the cleavage is auto-catalytic, the peptidase domains belong to MEROPS peptidase families S6 and S8.; PDB: 1UYN_X 1UYO_X 3AEH_B 3QQ2_C 3KVN_A 3SLO_A 3SLT_A 2QOM_B 3SLJ_A.
Probab=25.64 E-value=3e+02 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=19.5
Q ss_pred cceEEEEEEeeccCCceEEeeee
Q 014833 374 NQYQLESFLDLCLGKRFSLKLGT 396 (417)
Q Consensus 374 ts~hiEafYky~l~dnIsITPGl 396 (417)
...-+|+=|+|++++++.|+|=+
T Consensus 123 ~~~~~~~gy~~~~~~~~~l~P~~ 145 (265)
T PF03797_consen 123 FGASLELGYNFQLGGNWSLTPYA 145 (265)
T ss_dssp EEEEEEEEEEEESCCSEEEEEEE
T ss_pred eeeeeecceeeecceeEEEEEEE
Confidence 45578999999999999999944
No 91
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=25.62 E-value=85 Score=27.76 Aligned_cols=25 Identities=40% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHH---HHHhHHHHHHhhhhHHHHH
Q 014833 32 EILKRL---QRESFSEQMKQRDRLDKVE 56 (417)
Q Consensus 32 ~~LkRL---Q~EF~aELatLr~RvD~LE 56 (417)
++|+|| |+||.+=|..||.-=|+=|
T Consensus 78 ~tL~RLEeEq~eF~~Fl~rLR~AKDk~E 105 (115)
T PF11014_consen 78 DTLRRLEEEQREFEDFLERLRRAKDKEE 105 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 566666 6679999999998888755
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.19 E-value=88 Score=30.50 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHH------------HhHHHHHHhhhhHHHHHHhhhhhhhCCCCCCCcc
Q 014833 32 EILKRLQR------------ESFSEQMKQRDRLDKVERLLSFYKLSKGSPFQEA 73 (417)
Q Consensus 32 ~~LkRLQ~------------EF~aELatLr~RvD~LE~Rta~lEa~Q~~~ffST 73 (417)
+..+||++ |-+.||..+|+.+|.+|.+...|+..-- |||
T Consensus 146 ~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~---~st 196 (262)
T PF14257_consen 146 AEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD---YST 196 (262)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---eEE
No 93
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.79 E-value=28 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.037 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhHHHHHHh
Q 014833 30 PIEILKRLQRESFSEQMKQRDRLDKVERL 58 (417)
Q Consensus 30 dL~~LkRLQ~EF~aELatLr~RvD~LE~R 58 (417)
....++.|.+||-.+..++++-++.||++
T Consensus 13 ~~~S~~eLa~~~~~s~~~ve~mL~~l~~k 41 (69)
T PF09012_consen 13 GRVSLAELAREFGISPEAVEAMLEQLIRK 41 (69)
T ss_dssp -SEEHHHHHHHTT--HHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35678889999999999998888888764
No 94
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=24.75 E-value=1.1e+02 Score=34.40 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 6 SAVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.+.+||++.|+.+...- .+|..+...+.+||.+=+.+.+.|.+..|+|+.+.+..+
T Consensus 427 ~l~~~i~~~V~~i~~~f-----~~d~~vf~~~l~el~~~~~~~~~~~~~~~~r~~~~~~g~ 482 (729)
T PF07793_consen 427 PLYQKIEEVVDRILQEF-----EGDPAVFEELLQELEAFLEQERRRAQRNERRAIEAEEGR 482 (729)
T ss_pred HHHHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888877666653 478999999999999999999999999999999887766
No 95
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=24.74 E-value=98 Score=26.21 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhH-------------HHHHHhhhhHHHHHHhhhhhhhC
Q 014833 31 IEILKRLQRESF-------------SEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 31 L~~LkRLQ~EF~-------------aELatLr~RvD~LE~Rta~lEa~ 65 (417)
+++..||++++. .|+.+||.++..|++|+..++++
T Consensus 53 ~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~~ 100 (101)
T PRK10265 53 VQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENRLLRQRLSRFVAH 100 (101)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556777664 45666777777777777666654
No 96
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=24.73 E-value=1.4e+02 Score=30.72 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCCCCCCCcceeEEEEEE
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSKGSPFQEASTHVRAEV 81 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q~~~ffSTTTkL~Gev 81 (417)
+++||..-+=+..-+..++.|++.|..|+..+|-.- +..+-+++|-.
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~r~~~L~~~~~~l~~~~----~~~~i~v~~~~ 120 (339)
T PF12699_consen 74 IADLKDYAVKFMSGIERVEERIDKLQERAKKLKKPD----EKKEITVKNNQ 120 (339)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccCC----CCceEEecCcc
Confidence 556666666677788899999999999999997777 56666666443
No 97
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.38 E-value=1.6e+02 Score=22.46 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 30 PIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 30 dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
-++.|+.--.+...|...|+.+++.|+.....|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667777778888999999999999988887764
No 98
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=24.03 E-value=92 Score=27.22 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHHhHHHHHHhhhhHH----HHHHhhhhhhhCC
Q 014833 27 SRNPIEILKRLQRESFSEQMKQRDRLD----KVERLLSFYKLSK 66 (417)
Q Consensus 27 ~r~dL~~LkRLQ~EF~aELatLr~RvD----~LE~Rta~lEa~Q 66 (417)
..-|..+|+-||+++-.-+..|-.+++ .+=+|+..||..-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345788999999988644444444432 3344555555555
No 99
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=23.94 E-value=1.5e+02 Score=27.16 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 11 VKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 11 ~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++.-.+.+.++.+.. -|..+-.+-..++..++..+++++.|...+|..+
T Consensus 28 l~r~Y~~lm~g~~~~-------~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 28 LKRRYDALMRGKDGK-------NLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHhCCCCcc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355566664422 2333444555566666666666666666666655
No 100
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=23.84 E-value=1.4e+02 Score=25.83 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=42.0
Q ss_pred HHHHhHHHH---hhhcc-cCCCC-CCCCChHHHHHH--------HHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 6 SAVEKVKGF---IDSLF-HRSQN-SYSRNPIEILKR--------LQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 6 ~~~~~~~~~---~~~~~-~~~~~-~~~r~dL~~LkR--------LQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
+-++|++++ |..++ -|..+ +-.||.+.+|-- +++|...+|..+--..-.||.|+..+-++-
T Consensus 23 s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnlnt~~ 96 (107)
T PRK15365 23 HCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQA 96 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456777777 52333 33333 334666666654 389999999999988999999998876654
No 101
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.75 E-value=1.8e+02 Score=24.92 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
.++|++-.+|...++..|......||...+.+++
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 81 QQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667777777888888888888778777777664
No 102
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.74 E-value=1.6e+02 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++.|.+..++...+|+.++.+++.++..+..+...+
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999998887654
No 103
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=23.64 E-value=79 Score=27.50 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.+++..+++-|.+...+|..+...++.||..+..||..=
T Consensus 63 ~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~ 101 (116)
T PF05064_consen 63 YSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQV 101 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888889888888888888888888754
No 104
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=23.56 E-value=2e+02 Score=25.43 Aligned_cols=56 Identities=7% Similarity=0.094 Sum_probs=33.1
Q ss_pred HHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 8 VEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
|+.|++++.... .+....+-.+.|++=.+|-..+++.|..-.+.|+..++.++.+.
T Consensus 60 L~eI~~ll~~~~---~~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~~~ 115 (131)
T cd04786 60 LDEIRQLLPADA---SNWQHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIESKP 115 (131)
T ss_pred HHHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566666664211 11112233455666666777777777777777777777777655
No 105
>PRK11239 hypothetical protein; Provisional
Probab=23.53 E-value=54 Score=31.92 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=10.6
Q ss_pred HHhhhhHHHHHHhhhhhhh
Q 014833 46 MKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 46 atLr~RvD~LE~Rta~lEa 64 (417)
..|.+||+.||++++.|++
T Consensus 186 ~~Le~rv~~Le~eva~L~~ 204 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQ 204 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666665555543
No 106
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=23.45 E-value=1.5e+02 Score=30.27 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=38.9
Q ss_pred hhHHHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 4 VTSAVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
|+.+|+++...++..|.| +-+|+.+ ...-|..|.+|++.+++++..|.-++
T Consensus 23 i~~aL~~L~~v~~diF~r-----------I~~Rv~~-~~~~l~~i~~Ri~~~qaKi~~l~gs~ 73 (297)
T PF11945_consen 23 IADALEYLDKVSNDIFSR-----------ISARVER-NRERLQAIQQRIEVAQAKIEKLQGSK 73 (297)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777777778777777 4456544 45668899999999999999997777
No 107
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=23.36 E-value=90 Score=29.54 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta 60 (417)
.|+=.--+|||++--+||-+||.....|+..+.
T Consensus 115 ~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~ 147 (179)
T PF13942_consen 115 SEERARYQRLQQSSDSELDALRQQQQRLQYQLD 147 (179)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999999998888776554
No 108
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.34 E-value=1.3e+02 Score=27.54 Aligned_cols=30 Identities=7% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCCCChHHHHHHHHHHhHHHHHHhhhhHHH
Q 014833 25 SYSRNPIEILKRLQRESFSEQMKQRDRLDK 54 (417)
Q Consensus 25 ~~~r~dL~~LkRLQ~EF~aELatLr~RvD~ 54 (417)
..+.|..+++|.|.+||.+|-+.||..+-.
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~a 72 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVS 72 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999976543
No 109
>PRK10722 hypothetical protein; Provisional
Probab=22.77 E-value=80 Score=31.37 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHH
Q 014833 35 KRLQRESFSEQMKQRDRLDKVER 57 (417)
Q Consensus 35 kRLQ~EF~aELatLr~RvD~LE~ 57 (417)
||||++-.++|-+||..+-.|++
T Consensus 168 ~rLQq~sD~qlD~lrqq~~~Lq~ 190 (247)
T PRK10722 168 QKLQQSSDSELDALRQQQQRLQY 190 (247)
T ss_pred HHHhhccHHHHHHHHHHHHHHHH
Confidence 45555555555555554444333
No 110
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.68 E-value=1.3e+02 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 30 PIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 30 dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
.|.-+.++|++=.+||..|..++|.|+..+..|+.
T Consensus 47 ~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~ 81 (126)
T PF07028_consen 47 ELKNLSKIQESQRSELKELKQELDVLSKELQALRK 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888899999999999999988877654
No 111
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=22.54 E-value=1e+02 Score=33.29 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.+++-.+.|+|.+-..=+..|..|+|.||.|...||.+-
T Consensus 419 ~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl 457 (489)
T KOG3684|consen 419 ANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKL 457 (489)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888889999999999999888754
No 112
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=22.41 E-value=1.4e+02 Score=31.14 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.6
Q ss_pred ceeEEEEEEeecCCeEEEEEEeEEecc
Q 014833 314 GSIALKLETELDENAKVGGWFEMQNSN 340 (417)
Q Consensus 314 ns~g~q~~~~i~~~~~lgGW~g~~~~~ 340 (417)
-+..+.++|||+|++.|||.+++.++.
T Consensus 298 y~l~a~~eyrls~~~~lGg~~~~~~s~ 324 (342)
T PF05420_consen 298 YSLRAAVEYRLSPHWFLGGGLDIDNSG 324 (342)
T ss_pred EEEEEEEEEEecCCEEEEEEEehhhcC
Confidence 466778889999999999999998874
No 113
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.37 E-value=1.8e+02 Score=24.97 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 014833 8 VEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta 60 (417)
+++++++++ ++ ++.|++..++...+|+.++..+..++.++.
T Consensus 84 ~~eA~~~l~---~~---------~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 84 AEEAIEFLK---KR---------IEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHH---HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666665 33 889999999999999999999999988764
No 114
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=21.90 E-value=3.5e+02 Score=28.68 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=56.7
Q ss_pred EeeeCCcEEEEEEeccccccCcccCCCCccCCCCcccccccCCCc-ccccCCeeEEEEEe-cCceEEEeeeeccCCCCCC
Q 014833 156 VANVGDWFYAIAVPVGAQCRDFDIARNYSHKAKGLTTISSLDPPL-LSQHNGGAIGFTVR-KSNVVASLAQSVSGLGVQL 233 (417)
Q Consensus 156 ~fpv~d~~~~~v~~~G~~~~D~~~t~Np~~~~~~l~~~S~fgnPi-y~~~~G~Gig~~~~-~~~~~~sl~yl~~~~g~p~ 233 (417)
.+.+++++.+.+...--.+.++-.-.-- + ..+.. . +..|. |+-.--.++|+.|+ .+++++.+||.-.....+.
T Consensus 294 ~~~~~~~~~l~~d~~wt~WS~~~~l~i~-~-~~g~~-~--~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~yd~spv~~ 368 (435)
T PRK10716 294 YNRVAPQWAIHYSLAYTSWSQFQELKAT-S-SNGDT-L--FQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPA 368 (435)
T ss_pred EEecCCcEEEEEEEEEeeecccceEEEE-e-CCCcc-e--ecccccceeeeEEEeeEEEECCCCeEEEEeeEeccCCCCc
Confidence 3446677777776666555442211000 0 00100 0 11122 44444578999999 6789999997655422222
Q ss_pred CCCC--C-CCC---ccceEeEEEEeCCCceeeEEEeeecC
Q 014833 234 GSDG--I-GHC---LSTFGQVVCQLSRGVNLSLMGLHQVP 267 (417)
Q Consensus 234 ~~~g--f-~g~---ysalgQl~~~P~~~~~lsltY~~~y~ 267 (417)
.... + +.+ |++ =+.|++++++.+.+.|.|.+.
T Consensus 369 ~~r~~~~Pd~dr~~~s~--G~~y~~~~~~~vd~ay~y~~~ 406 (435)
T PRK10716 369 QNRSISIPDQDRFWLSA--GTTYAFNKDASVDVGVSYMHG 406 (435)
T ss_pred CcccccccCCCCeEEEe--eeEEEcCCCcEEEEEEEEEEe
Confidence 1111 2 222 333 347899999998888877654
No 115
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=21.26 E-value=78 Score=31.95 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=42.2
Q ss_pred cccCCCCCCCCChHHHHHHHHHH-------hHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 18 LFHRSQNSYSRNPIEILKRLQRE-------SFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 18 ~~~~~~~~~~r~dL~~LkRLQ~E-------F~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
|+.+++..-++=|||.||||.+= ..||-+||-+|..==++...+||.|-
T Consensus 162 Fi~ptGhsLrplDieflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 162 FIPPTGHSLRPLDIEFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred EeCCCCCccCcccHHHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcC
Confidence 55777888899999999999985 46888899999988888889999887
No 116
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=21.24 E-value=92 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=21.7
Q ss_pred CCCCCChHHHHHHHHHHh-------------HHHHHHhhhhHHHH
Q 014833 24 NSYSRNPIEILKRLQRES-------------FSEQMKQRDRLDKV 55 (417)
Q Consensus 24 ~~~~r~dL~~LkRLQ~EF-------------~aELatLr~RvD~L 55 (417)
-+-+.+.++-|++|-+|- .+|++.||.|++.|
T Consensus 188 ~Pls~e~l~~i~~L~~~l~~~l~~~L~~llt~~Ei~Al~~R~~~L 232 (253)
T TIGR03843 188 EPLPAELLADLARLRDDLDGDLGRELAELLTPEEVAALRRRVDRL 232 (253)
T ss_pred CCCCHHHHHHHHHHHHhhcChHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667777888877666 45666777777666
No 117
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.17 E-value=1.1e+02 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=14.9
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 42 FSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 42 ~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..+|-.+..|+++||.+.+.+|..
T Consensus 12 e~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 12 ETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777776666644
No 118
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.14 E-value=1.7e+02 Score=24.69 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=24.8
Q ss_pred HHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 014833 7 AVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta 60 (417)
++.++..+|++-+- ++.+|+..|.++=+....+-+.++..+..|+.-..
T Consensus 4 ~f~~~~~~v~~el~-----~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~ 52 (99)
T PF10046_consen 4 MFSKVSKYVESELE-----ATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLE 52 (99)
T ss_pred HHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666553333 33566666666555555544444444444433333
No 119
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.00 E-value=83 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHH-hhhhHHHHHHhhhhh
Q 014833 31 IEILKRLQRESFSEQMK-QRDRLDKVERLLSFY 62 (417)
Q Consensus 31 L~~LkRLQ~EF~aELat-Lr~RvD~LE~Rta~l 62 (417)
++..+.-++.+.+|+.. +++|.|.+=+-+...
T Consensus 22 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~eln~~ 54 (123)
T PF11351_consen 22 AELQQAALEQFAAEFEAARRARFDRMQAELNRA 54 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 55555555555566655 555666554444333
No 120
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.93 E-value=1.7e+02 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHhHHHHHHhhhhHHHHHHhh
Q 014833 29 NPIEILKRLQRESFSEQMKQRDRLDKVERLL 59 (417)
Q Consensus 29 ~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rt 59 (417)
-+-|.|++|.+.-..|+...+..+|.||..+
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3468888899998889999999999998765
No 121
>PHA03046 Hypothetical protein; Provisional
Probab=20.77 E-value=1.9e+02 Score=26.35 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
|..|.+|-++-...-.++..|++.||+++..+..+.
T Consensus 93 L~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 93 LLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999998887665
No 122
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.73 E-value=1.2e+02 Score=31.66 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 32 EILKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 32 ~~LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
++|+.+|+-|..-+.++.+.|.+||.|++.|
T Consensus 357 ~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 357 ELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888889999999999999998876
No 123
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=20.66 E-value=95 Score=25.23 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.3
Q ss_pred HHHHHhhhhHHHHHHhhhhh
Q 014833 43 SEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 43 aELatLr~RvD~LE~Rta~l 62 (417)
+|.-.+..|+|.+|.++.+-
T Consensus 15 ~dfne~~kRLdeieekvef~ 34 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFV 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56677888999999998774
No 124
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.50 E-value=1.4e+02 Score=24.18 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 29 NPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 29 ~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++++-.|..-.|=-..+..=++|+|.||.+++.|+++-
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a 47 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNA 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHh
Confidence 34666666777777788888889999999999987653
No 125
>PF01389 OmpA_membrane: OmpA-like transmembrane domain; InterPro: IPR000498 The ompA-like transmembrane domain is present in a number of different outer membrane proteins of several Gram-negative bacteria. Many of the proteins having this domain in the N-terminal also have the conserved bacterial outer membrane protein domain IPR006664 from INTERPRO at the C terminus. The outer membrane protein A of Escherichia coli (OmpA), is one of the most studied proteins in this group []. It has a multifunctional role. OmpA is required for the action of colicins K and L and for the stabilisation of mating aggregates in conjugation. It also serves as a receptor for a number of T-even like phages and can act as a porin with low permeability that allows slow penetration of small solutes []. OmpA consists of a regular, extended eight-stranded beta-barrel and appears to be constructed like an inverse micelle with large water-filled cavities, but does not form a pore. The cavities seem to be highly conserved during evolution. The structure corroborates the concept that all outer membrane proteins consist of beta-barrels []. The beta-barrel membrane anchor appears to be the outer membrane equivalent of the single-chain alpha-helix anchor of the inner membrane.; GO: 0009279 cell outer membrane, 0016021 integral to membrane; PDB: 1G90_A 1QJP_A 3NB3_C 1BXW_A 2GE4_A 2JMM_A 2K0L_A.
Probab=20.42 E-value=2e+02 Score=26.81 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=35.4
Q ss_pred EEEEeeeCCcEEEEEEeccccccCcccCCCCccCCCCcccccccC-CCcccccCCeeEEEEEec-CceEEEeeeec
Q 014833 153 LSYVANVGDWFYAIAVPVGAQCRDFDIARNYSHKAKGLTTISSLD-PPLLSQHNGGAIGFTVRK-SNVVASLAQSV 226 (417)
Q Consensus 153 L~Y~fpv~d~~~~~v~~~G~~~~D~~~t~Np~~~~~~l~~~S~fg-nPiy~~~~G~Gig~~~~~-~~~~~sl~yl~ 226 (417)
+.+.+||+|++.++... |+..-+.-...+.-..+ .....+.-+ +|+ .|+|+.|+. +++.+.+.|--
T Consensus 83 ~k~~~pltd~l~ly~k~-G~~~~~~d~~~~~~~~~-~~~~~~~~~~s~~------~g~G~eY~lt~~~~~rleYq~ 150 (183)
T PF01389_consen 83 LKFSYPLTDDLDLYAKA-GAAYWQSDYKSSNTNSG-SSITNSDDGVSPL------AGLGLEYALTPNWSLRLEYQY 150 (183)
T ss_dssp EEEEEESSSSEEEEEEE-EEEEEEEEEESSSS-SS-S-BEEEEEEEEEE------EEEEEEEEECTTEEEEEEECC
T ss_pred EEEEEEccCCEEEEEEe-eEEEEEeccceeccccc-CcccccccccceE------EEEEEEEEeCcCceeEEEEEE
Confidence 35679999999998755 44433322211110111 111111111 222 478899994 78888888643
Done!