Query 014833
Match_columns 417
No_of_seqs 107 out of 115
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gey_A Porin B; beta-barrel, o 99.9 7.8E-20 2.7E-24 185.4 29.2 270 111-403 73-417 (436)
2 2wjr_A Probable N-acetylneuram 93.8 0.049 1.7E-06 51.1 4.4 40 376-415 54-93 (214)
3 2yy0_A C-MYC-binding protein; 87.8 0.6 2.1E-05 34.5 4.2 48 14-63 6-53 (53)
4 3prn_A Porin; integral membran 85.7 23 0.00079 34.5 15.4 266 75-381 2-286 (289)
5 1go4_E MAD1 (mitotic arrest de 77.2 2.3 7.9E-05 35.4 4.1 51 24-77 7-58 (100)
6 3swy_A Cyclic nucleotide-gated 69.1 5 0.00017 28.8 3.7 27 33-59 20-46 (46)
7 3swf_A CGMP-gated cation chann 68.4 5.8 0.0002 31.2 4.3 34 33-66 22-55 (74)
8 3t24_A Porin; beta-barrel, cha 65.5 1.2E+02 0.0039 30.5 18.1 112 208-337 101-214 (401)
9 3szv_A Pyroglutatmate porin OP 65.5 1.2E+02 0.0039 30.5 17.1 104 208-338 110-215 (401)
10 1nkp_B MAX protein, MYC proto- 60.7 10 0.00034 29.7 4.4 31 34-64 52-82 (83)
11 3p8c_E Probable protein brick1 56.0 5.9 0.0002 31.3 2.3 34 33-66 35-68 (75)
12 3sy7_A Porin D; beta-barrel, c 54.0 1.9E+02 0.0064 29.2 16.2 104 208-337 101-206 (428)
13 3sy9_A Histidine porin OPDC; b 52.3 2E+02 0.0068 29.1 16.1 108 208-338 105-214 (430)
14 3ci9_A Heat shock factor-bindi 52.2 19 0.00064 26.0 4.2 33 33-65 14-46 (48)
15 3pp5_A BRK1, protein brick1; t 51.8 7.7 0.00026 30.5 2.3 27 40-66 42-68 (73)
16 2er8_A Regulatory protein Leu3 47.6 9.8 0.00034 28.4 2.3 24 43-66 49-72 (72)
17 3t98_B Nucleoporin NUP58/NUP45 47.2 19 0.00065 29.3 4.1 38 29-66 5-42 (93)
18 3iv1_A Tumor susceptibility ge 46.9 18 0.00063 28.6 3.8 56 5-65 6-61 (78)
19 3szd_B Porin; beta-barrel, cha 46.3 1.7E+02 0.0058 29.4 11.9 61 208-269 99-161 (405)
20 1g6u_A Domain swapped dimer; d 45.8 11 0.00039 26.3 2.1 31 34-64 9-41 (48)
21 2x9k_A OMPG, outer membrane pr 45.3 77 0.0026 30.7 8.7 21 316-336 112-134 (280)
22 1nkp_A C-MYC, MYC proto-oncoge 42.2 30 0.001 27.6 4.5 32 33-64 56-87 (88)
23 3gw6_A Endo-N-acetylneuraminid 41.8 14 0.00048 35.7 2.9 29 36-64 246-274 (275)
24 3nmd_A CGMP dependent protein 40.0 39 0.0013 26.4 4.6 39 26-64 13-54 (72)
25 2yy0_A C-MYC-binding protein; 38.9 25 0.00086 25.7 3.2 25 41-65 24-48 (53)
26 3p8c_D Wiskott-aldrich syndrom 37.6 31 0.0011 33.4 4.6 36 31-66 41-87 (279)
27 2y0h_A Probable porin, OPDL; t 35.4 3.3E+02 0.011 26.7 16.8 103 210-337 96-200 (391)
28 1zme_C Proline utilization tra 33.9 25 0.00085 25.8 2.6 20 45-64 46-65 (70)
29 3tnu_A Keratin, type I cytoske 33.4 29 0.001 29.4 3.3 40 26-65 35-74 (131)
30 2xdj_A Uncharacterized protein 33.0 31 0.0011 27.5 3.1 28 39-66 30-57 (83)
31 3hnw_A Uncharacterized protein 33.0 42 0.0015 29.0 4.3 39 28-66 95-133 (138)
32 1hwt_C Protein (heme activator 32.3 20 0.00068 27.2 1.9 21 43-63 58-78 (81)
33 3t97_C Nuclear pore glycoprote 32.0 45 0.0015 25.3 3.8 38 29-66 19-56 (64)
34 3tnu_B Keratin, type II cytosk 31.4 34 0.0012 28.9 3.4 40 26-65 33-72 (129)
35 2y0l_A OPDO, CIS-aconitate por 31.4 3.9E+02 0.013 26.3 11.7 58 210-268 106-165 (402)
36 3eff_K Voltage-gated potassium 30.9 45 0.0015 28.0 4.0 25 36-60 111-135 (139)
37 3syb_A Glycine-glutamate dipep 30.8 4.5E+02 0.015 26.9 17.3 105 208-337 142-249 (467)
38 3efg_A Protein SLYX homolog; x 30.4 23 0.00078 27.9 1.9 18 47-64 11-28 (78)
39 3efd_K KCSA; helix bundle, C-t 30.1 51 0.0018 21.2 3.1 22 39-60 7-28 (30)
40 1ykh_B RNA polymerase II holoe 30.1 94 0.0032 26.5 6.0 57 5-63 64-123 (132)
41 3qra_A AIL, attachment invasio 29.7 1.2E+02 0.004 26.1 6.7 32 372-403 24-55 (157)
42 1yke_B RNA polymerase II holoe 29.7 89 0.003 27.4 5.8 57 5-63 64-123 (151)
43 2pnv_A Small conductance calci 29.6 31 0.0011 24.3 2.3 14 50-63 16-29 (43)
44 1nlw_A MAD protein, MAX dimeri 29.0 63 0.0022 25.2 4.3 29 34-62 52-80 (80)
45 2y2x_A OPDK, vanillate porin O 28.8 4.2E+02 0.014 25.9 12.3 59 209-268 97-157 (390)
46 2oqq_A Transcription factor HY 28.6 34 0.0011 24.0 2.3 25 40-64 7-31 (42)
47 1use_A VAsp, vasodilator-stimu 28.5 62 0.0021 23.1 3.7 35 26-62 4-39 (45)
48 3ci9_A Heat shock factor-bindi 28.5 40 0.0014 24.3 2.7 29 32-60 20-48 (48)
49 3pjs_K KCSA, voltage-gated pot 28.3 53 0.0018 28.5 4.2 24 37-60 139-162 (166)
50 2lw1_A ABC transporter ATP-bin 27.5 33 0.0011 27.2 2.4 23 44-66 23-45 (89)
51 1d66_A Protein (GAL4); protein 24.5 28 0.00095 25.1 1.4 15 49-63 51-65 (66)
52 3i00_A HIP-I, huntingtin-inter 24.3 69 0.0023 27.2 4.0 29 34-62 31-59 (120)
53 1xn7_A Hypothetical protein YH 23.9 22 0.00077 27.6 0.8 41 8-59 4-44 (78)
54 3aeh_A Hemoglobin-binding prot 23.8 3.6E+02 0.012 25.1 9.5 69 314-396 109-177 (308)
55 4dnd_A Syntaxin-10, SYN10; str 23.7 1.1E+02 0.0038 26.0 5.2 59 5-66 37-97 (130)
56 3mov_A Lamin-B1; LMNB1, B-type 23.7 90 0.0031 25.3 4.4 32 33-64 27-58 (95)
57 3twe_A Alpha4H; unknown functi 23.6 84 0.0029 19.5 3.1 22 38-59 3-24 (27)
58 2oqq_A Transcription factor HY 23.6 70 0.0024 22.4 3.1 21 45-65 5-25 (42)
59 3kin_B Kinesin heavy chain; mo 23.2 88 0.003 26.1 4.4 32 31-62 84-115 (117)
60 3ibp_A Chromosome partition pr 22.8 75 0.0026 31.1 4.3 37 30-66 246-298 (302)
61 2rf4_B DNA-directed RNA polyme 22.4 37 0.0013 27.4 1.8 13 30-42 60-72 (87)
62 4i0x_B ESAT-6-like protein MAB 22.0 1.1E+02 0.0037 24.2 4.6 36 30-65 12-47 (103)
63 3qq2_A BRKA autotransporter; b 21.9 2.4E+02 0.0084 25.8 7.8 71 314-396 90-160 (284)
64 1uyn_X NALP; autotransporter, 21.9 1.3E+02 0.0045 28.4 5.9 23 374-396 155-177 (308)
65 1fxk_C Protein (prefoldin); ar 20.4 1.4E+02 0.0048 24.7 5.2 44 8-63 86-129 (133)
No 1
>4gey_A Porin B; beta-barrel, outer membrane channel, carbohydrate transport, transport protein; HET: BGC C8E DMU; 2.70A {Pseudomonas putida} PDB: 4gf4_A*
Probab=99.87 E-value=7.8e-20 Score=185.43 Aligned_cols=270 Identities=9% Similarity=0.001 Sum_probs=150.1
Q ss_pred EEEEEEEec-ccccceEEEEEeeccCCC--------------cC----cCCCCCCceEEeEEEEEeeeCC-cEEEEEEec
Q 014833 111 HTRFTFETT-MRQNDTLVADFVACQEGG--------------KN----VGNISGRSLSLAKLSYVANVGD-WFYAIAVPV 170 (417)
Q Consensus 111 r~RL~f~TS-FtGkD~L~trL~agn~~~--------------~~----~~~~~gn~v~l~kL~Y~fpv~d-~~~~~v~~~ 170 (417)
+..++|+++ ++|+|.+++++++.++.. .. .....++.+.|++|+|++++.| ++.+.++-.
T Consensus 73 ~~~~~~Dl~k~~G~~g~~~~~~~~~~~G~~~s~~~~~~~~~g~~~~~~~~~~~~~~~rL~~L~y~q~~~d~~~~i~~G~~ 152 (436)
T 4gey_A 73 ALGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRF 152 (436)
T ss_dssp EEEEEEEHHHHTCCTTEEEEEEEEEEEECCHHHHTTSBTTBCCSSCSCTTCCSCSSEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEhHHhCCCCCcEEEEEEEEecCCCccccccccccccccccccccccCCCeEEEEEEEEEeEcCCCeEEEEEccc
Confidence 344445543 899999999999877631 00 0112357899999999999976 577877765
Q ss_pred cccccCcccCCCCccCC--CCcccccccCCCccccc-CCeeEEEEEe-cCceEEEeeeeccCCCCCCCCCCC----CCC-
Q 014833 171 GAQCRDFDIARNYSHKA--KGLTTISSLDPPLLSQH-NGGAIGFTVR-KSNVVASLAQSVSGLGVQLGSDGI----GHC- 241 (417)
Q Consensus 171 G~~~~D~~~t~Np~~~~--~~l~~~S~fgnPiy~~~-~G~Gig~~~~-~~~~~~sl~yl~~~~g~p~~~~gf----~g~- 241 (417)
... +||......+... .+...+...+++.+... .+.|+.+.|+ .+.+.++++|+..++.++..++|+ ++.
T Consensus 153 ~~~-~~f~~~~~~f~~~~~~~~~~~~~~~~~~~~~p~~~~G~~~~~~~~~~~~~~~g~~~~np~~~~~~~g~~~~~~~~~ 231 (436)
T 4gey_A 153 GEG-EDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYNITPAFFVQVGAFEQNPSNLETGNGFKLSGSGTK 231 (436)
T ss_dssp CGG-GTSSCCCCCSSSGGGSSCSHHHHTTTTCCCTTCCEEEEEEEEEEETTEEEEEEEEEECGGGGSTTCTTCCSCTTCC
T ss_pred ccc-chhcccccccccccccccccccccCcccccCCCccceEEEEEecccceEEEEEEEecCCCCCCCCCCcccCCCCCc
Confidence 543 4454333332211 11112222223333222 3457777777 468999999998876655544443 222
Q ss_pred -ccceEeEEEEeCC-----CceeeEEEeeecCCCCCCccCCCCcccccceeccccccCCccCCCCccCCCCccceee-cc
Q 014833 242 -LSTFGQVVCQLSR-----GVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLKQRNASENSVGASASSLGMNTQEIVS-TG 314 (417)
Q Consensus 242 -ysalgQl~~~P~~-----~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~n 314 (417)
+...+|+.|+|.. ..+++..|.+++... ...+... .+.. .. + ....... ..
T Consensus 232 G~~~~~e~~~~~~~~~lpg~y~~g~~y~~~~~~d--~~~~~~g--~~~~--------------~~---~-~~~~~~~~~~ 289 (436)
T 4gey_A 232 GAIMPMEAVWSPKVNGLPGEYRLGYYYSTAKADD--VYDDVNG--NPQA--------------LT---G-EAFKSHSSKH 289 (436)
T ss_dssp EEEEEEEEEECCEETTEEEEEEEEEEEECSCEEE--EEEETTS--SBHH--------------HH---C-CCEEEESCEE
T ss_pred ceEEEEEeeeccccCCCccEEEEeeEEecCCccc--eeccccC--cccc--------------cc---C-ccccccccce
Confidence 3344688888754 345555555543210 0000000 0000 00 0 0011111 13
Q ss_pred eeEEEEEEeecC-----CeEEEEEEeEEecc--c---eEEEEeEEee-----cCCCC-cccceeeccee-----------
Q 014833 315 SIALKLETELDE-----NAKVGGWFEMQNSN--S---NLRWAVTISD-----IFNED-LEWGVTFSGMH----------- 367 (417)
Q Consensus 315 s~g~q~~~~i~~-----~~~lgGW~g~~~~~--~---iw~wavtla~-----~~e~d-lG~g~~~gg~~----------- 367 (417)
.+.+.++.++.. .--++.|+.+..+. . -+.|.+.+.. ..+.| +|+++....+-
T Consensus 290 g~~~~~~q~l~~~~~~~~~gl~~f~~~~~~~~~~~~~~~~~~~Gl~~~g~~~~Rp~D~~g~~~~~~~~s~~~~~~~~~~~ 369 (436)
T 4gey_A 290 GWWVVAQQQVTAHGGDVNRGLSLFANFTVHDKATNVVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNDDVKKRAELLN 369 (436)
T ss_dssp EEEEEEEEECCCGGGCTTSEEEEEEEEEEECTTTCSEEEEEEEEEEEECSSTTSTTCEEEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEEEEEEEEEecCCCCCcceeEEeEEEecCCCCceeeeEEEEeEEEEccccCCCCCceeEEEEEEecCHhHhhhhhhhc
Confidence 455666666632 33466666655432 1 3555555553 12334 56554432220
Q ss_pred --c----------CCCCCcceEEEEEEeeccCCceEEeeeeEEEEcCC
Q 014833 368 --D----------GSKGWNQYQLESFLDLCLGKRFSLKLGTSYVADGD 403 (417)
Q Consensus 368 --~----------~~d~dts~hiEafYky~l~dnIsITPGli~i~np~ 403 (417)
. ...+++++|+|+||||||+|||+|||++.||+||+
T Consensus 370 ~~~G~~~~~~~~~~~~~~~e~~~E~~Y~~qvt~~i~itP~~qyI~nP~ 417 (436)
T 4gey_A 370 AQSGINDYDNPGFVPLQRTEYNAELYYGFHVTNWLTVRPNLQYIKSPG 417 (436)
T ss_dssp HHHTCCCTTSTTCCCCCCEEEEEEEEEEEECSSSEEEEEEEEEEESGG
T ss_pred cccCcccccCCCCCCCCCCCEEEEEEEEeecCCCEEEEeeEEEEECCC
Confidence 0 12468999999999999999999999999999984
No 2
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=93.79 E-value=0.049 Score=51.09 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=31.3
Q ss_pred eEEEEEEeeccCCceEEeeeeEEEEcCCCCcceEEEeeec
Q 014833 376 YQLESFLDLCLGKRFSLKLGTSYVADGDAQIPALMLRCIW 415 (417)
Q Consensus 376 ~hiEafYky~l~dnIsITPGli~i~np~~~~~al~~~~~w 415 (417)
--+|+.|+|+|+||++|+||+...++.+.-+=.--||-.|
T Consensus 54 ~E~~~~Y~~k~~d~~~l~PG~~~~~~s~~~~YkPylk~~Y 93 (214)
T 2wjr_A 54 VQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSW 93 (214)
T ss_dssp EEEEEEECEESSSSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEecceEEEecCCCcEEeeEEEEeE
Confidence 3679999999999999999999888887654444444443
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.82 E-value=0.6 Score=34.48 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=27.4
Q ss_pred HhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhh
Q 014833 14 FIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 14 ~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lE 63 (417)
||..+++.. .+...|.+.||+=-+|..+++..|..+++.|.+++..+|
T Consensus 6 fIk~~LG~~--~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~e 53 (53)
T 2yy0_A 6 FLKHHLGAA--TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444555521 155889999998666666667777777777766665543
No 4
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=85.75 E-value=23 Score=34.45 Aligned_cols=266 Identities=11% Similarity=0.003 Sum_probs=130.7
Q ss_pred eEEEEEEEEEeeEeecCCcccccccccccccceeeeEEEEEEEecccccc----eEEEEEeeccCCCcCcCCCCCCceEE
Q 014833 75 THVRAEVDVLGAVLMMGDIDQQHADALDRAEVRTGIHTRFTFETTMRQND----TLVADFVACQEGGKNVGNISGRSLSL 150 (417)
Q Consensus 75 TkL~Gevif~~a~~~~~~~~~~~~~~~~~~~~~~g~r~RL~f~TSFtGkD----~L~trL~agn~~~~~~~~~~gn~v~l 150 (417)
.||.|-.-|.+.-. ++. ....+++++.-|.||+|.-|..=-. --+.||++.+..... ...++...+
T Consensus 2 v~~~G~~~fg~~y~--~~~------~~~~~~t~~~sr~rl~~~~s~etD~Gl~fga~~r~~~~~g~~~~--~~~~~~~~~ 71 (289)
T 3prn_A 2 ISLNGYGRFGLQYV--EDR------GVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFA--GTAGNAAQF 71 (289)
T ss_dssp EEEEEEEEEEEEEE--TTC------STTCCSEEEEEEEEEEEEEEECCTTSCEEEEEEEEEEETTCGGG--CCCBCCCEE
T ss_pred EEEeeEEEEeeEEe--cCc------CCCccceEEEEEEEEEEeeeEEecCCeEEEEEEEEEeccCCccc--cccCCcceE
Confidence 57888888887753 221 1134457788899999988765433 235677764422111 011122222
Q ss_pred eEEEEEeeeCCcEEEEEEeccccccCcccCCCCccCCCCccc--c----ccc---C---CCcccc-cCCeeEEEEEecCc
Q 014833 151 AKLSYVANVGDWFYAIAVPVGAQCRDFDIARNYSHKAKGLTT--I----SSL---D---PPLLSQ-HNGGAIGFTVRKSN 217 (417)
Q Consensus 151 ~kL~Y~fpv~d~~~~~v~~~G~~~~D~~~t~Np~~~~~~l~~--~----S~f---g---nPiy~~-~~G~Gig~~~~~~~ 217 (417)
- +.| .-+++.+.-+-+..++..... |- +.|+.. | +.| + .+ |.. -++.++=+.|....
T Consensus 72 ~-v~~-----g~~~v~~G~~~ga~d~~~~~~-~~--~~G~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~l~~~ys~Gg 141 (289)
T 3prn_A 72 W-TSY-----NGVTVSVGNVDTAFDSVALTY-DS--EMGYEWSSFGDAQSSFFAYNSKYDA-SGALDNYNGIAVTYSISG 141 (289)
T ss_dssp E-EEE-----TTEEEEEESCCCHHHHSSSTT-TT--CBTTTTBCTTSCCSCCCCCCCSCCT-TSTTTTCEEEEEEEECSS
T ss_pred E-EEc-----CcEEEEecCcCChhhhhhhhc-cc--CCCcccccccccccccccccccccc-ccccCCCceEEEEEEecC
Confidence 1 333 347788877777766433321 11 122222 1 111 0 00 111 23567778888778
Q ss_pred eEEEeeeeccCCCCCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccceeccccccCCccC
Q 014833 218 VVASLAQSVSGLGVQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLKQRNASENSVG 297 (417)
Q Consensus 218 ~~~sl~yl~~~~g~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 297 (417)
|+++++|-....+..... -.-.++. =+.|+ ..++.+++.|. . .+. ..+.... +++.. ..+. +...
T Consensus 142 fs~~~Sy~~~~~~~~~~~--~~d~~~l--~a~Yt-~g~~~v~aaY~-~---d~a-g~~D~~~---~~l~~-~y~f-G~~~ 206 (289)
T 3prn_A 142 VNLYLSYVDPDQTVDSSL--VTEEFGI--AADWS-NDMISLAAAYT-T---DAG-GIVDNDI---AFVGA-AYKF-NDAG 206 (289)
T ss_dssp EEEEEEEEETTTTSCGGG--SCCEEEE--EEEEE-CSSEEEEEEEE-E---SGG-GCTTCCE---EEEEE-EECC-SSSE
T ss_pred EEEEEEEEccCCCccccc--ccceEEE--EEEEe-cCCEEEEEEEe-c---cCC-CCCCccE---EEEEE-EEEc-CCCe
Confidence 999998876553221100 0111211 23443 45577777776 1 110 0000000 00000 0000 0000
Q ss_pred CCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEeccc-eEEEEeEEeecCCCCcccceeecceecC-CCCCcc
Q 014833 298 ASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQNSNS-NLRWAVTISDIFNEDLEWGVTFSGMHDG-SKGWNQ 375 (417)
Q Consensus 298 ~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~~~~-iw~wavtla~~~e~dlG~g~~~gg~~~~-~d~dts 375 (417)
.-............. ++|++.+.|.+ ..++|.+|++=..+.. .-.|++...- |||+|.++-+-+.. .+.+|.
T Consensus 207 ~v~~~Y~d~~d~~~~-~~~gl~~~Y~v-~a~tv~a~y~D~~~~~~~t~yGIg~~Y----DLGgGasl~~gy~~~~~~~~~ 280 (289)
T 3prn_A 207 TVGLNWYDNGLSTAG-DQVTLYGNYAF-GATTVRAYVSDIDRAGADTAYGIGADY----QFAEGVKVSGSVQSGFANETV 280 (289)
T ss_dssp EEEEEEEECTTSTTC-SEEEEEEEEEE-TTEEEEEEEEEECSTTCCCEEEEEEEE----EEETTEEEEEEEEECTTCCEE
T ss_pred EEEEEEEccccccCC-ceEEEEEEeEe-cCeEEEEEEeccccCCCcceEEEEEEe----cCCCCeEEEEEEEEcCCCceE
Confidence 000000000001123 78999999999 8899999987221112 5679999998 99988888543333 345665
Q ss_pred eEEEEE
Q 014833 376 YQLESF 381 (417)
Q Consensus 376 ~hiEaf 381 (417)
-++=..
T Consensus 281 ad~Gv~ 286 (289)
T 3prn_A 281 ADVGVR 286 (289)
T ss_dssp EEEEEE
T ss_pred EeeeeE
Confidence 554433
No 5
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.16 E-value=2.3 Score=35.37 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCCCCCCCc-ceeEE
Q 014833 24 NSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSKGSPFQE-ASTHV 77 (417)
Q Consensus 24 ~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q~~~ffS-TTTkL 77 (417)
+|.+.|++..|++=-++...|--.||.|++.||.++....-+.- |. ++|||
T Consensus 7 ~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd---~~~~~TKV 58 (100)
T 1go4_E 7 FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGD---YDQSRTKV 58 (100)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSC---CCTTTEEE
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCccCee
Confidence 45588999999999999999999999999999999977653331 33 47774
No 6
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=69.13 E-value=5 Score=28.82 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhh
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLL 59 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rt 59 (417)
.+.||.-||.+==++|+-|+.+||..+
T Consensus 20 r~ArLlae~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 20 RFARLLAEYNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367999999999999999999999864
No 7
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=68.39 E-value=5.8 Score=31.24 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
.+.||.-||.+=-++|+-|+.+||.++..+..--
T Consensus 22 rfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~ 55 (74)
T 3swf_A 22 RFARILAEYESMQQKLKQRLTKVEKFLKPLIDTE 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 3679999999999999999999999999866544
No 8
>3t24_A Porin; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 2.40A {Pseudomonas aeruginosa}
Probab=65.45 E-value=1.2e+02 Score=30.48 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=66.6
Q ss_pred eEEEEEecCceEEEeeeeccCC-C-CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccce
Q 014833 208 AIGFTVRKSNVVASLAQSVSGL-G-VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGF 285 (417)
Q Consensus 208 Gig~~~~~~~~~~sl~yl~~~~-g-~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~ 285 (417)
|+.+.+|.++..+.+|.+.... - .+.....+...|.. +||+.+..+++.|.+.|++++....+... ..+..
T Consensus 101 G~~~K~r~s~T~lk~G~q~~~~P~l~~~d~RllP~tf~G-~~l~s~ei~~LtL~ag~~~~~~~r~s~~~--~~~~~---- 173 (401)
T 3t24_A 101 GITAKLRASKSTLKIGTLTPKLPVIMPNDSRLLPQTFQG-GALNSMEIDGLTLDAGRLKKVNQRDSSDN--EDMTI---- 173 (401)
T ss_dssp EEEEEEEETTEEEEEEEECCCBTTBBCCCSSSSCCEEEE-EEEEECCSTTEEEEEEEEEEEECTTCSSC--BCBCB----
T ss_pred ceeEEEeeecceEEeeeeccccceeecCCccccchhhcc-cceeeeecccceeecccccccccccCCcc--ceeee----
Confidence 4567777777888999766442 1 12234456777776 79999999999999999999865332111 11000
Q ss_pred eccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEE
Q 014833 286 LKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQ 337 (417)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~ 337 (417)
...+.. ... .. ....+..-+-+-++|++++++++..|.+.-
T Consensus 174 ~~~~~~-------~~~---~~-~~~~~d~~~~~G~~Y~~~~~l~~~~~y~~l 214 (401)
T 3t24_A 174 TGGGKR-------QIV---VR-SGLTSDKFDFAGGSYKWTDNLSTSYHYGKL 214 (401)
T ss_dssp CCCTTC-------CCC---BC-TTCCBSCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ecCCcc-------eee---cc-CCcccceeeecCceeeeccccceeeeecch
Confidence 000000 000 00 011111234467789999999999997664
No 9
>3szv_A Pyroglutatmate porin OPDO; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 1.45A {Pseudomonas aeruginosa} PDB: 2y0k_A*
Probab=65.45 E-value=1.2e+02 Score=30.48 Aligned_cols=104 Identities=9% Similarity=-0.082 Sum_probs=66.5
Q ss_pred eEEEEEecCceEEEeeeeccCCC--CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccce
Q 014833 208 AIGFTVRKSNVVASLAQSVSGLG--VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGF 285 (417)
Q Consensus 208 Gig~~~~~~~~~~sl~yl~~~~g--~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~ 285 (417)
|+.+.+|.++..+.+|.+....- .......+...|.. +||+.+..+++.|...|+.++....+.. ...+..
T Consensus 110 g~~~K~r~~~T~lk~G~q~~~~P~l~~~d~RllP~Tf~G-~~l~s~ei~~LtL~ag~~~~~~~r~~~~--~~~~~~---- 182 (401)
T 3szv_A 110 GLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRG-ALLDVQEIDGLTLRGAHLDRNKLNSSSD--YQVFSA---- 182 (401)
T ss_dssp EEEEEEEETTEEEEEEEECCCCTTCCCCCSSSSCCEEEE-EEEEEEEETTEEEEEEEEEEEECTTCSS--CBCEEE----
T ss_pred hheEEEEecCcEEEEEEEEecccEEECCCceeChhheeE-EEEEceeeCCEEEEEEEEEEEecCCCcc--ccceee----
Confidence 45777777778899997765421 12233456778876 7999999999999999999986432210 000000
Q ss_pred eccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEe
Q 014833 286 LKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQN 338 (417)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~ 338 (417)
.+. .. .+..-+-+-++|++++++++..|.+.-+
T Consensus 183 -----------------~~~--~~-~~d~~~~~G~~Y~~~~~l~l~~~~~~le 215 (401)
T 3szv_A 183 -----------------NRI--GG-RSDAFDFAGGDYRLTPALTASLHQGRLK 215 (401)
T ss_dssp -----------------TTT--EE-EESCEEEEEEEEESSSSEEEEEEEEEET
T ss_pred -----------------ecC--CC-cCCceEEEEEEEecCCCEEEEEEhhcCc
Confidence 000 01 1113445777999999999999987653
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.66 E-value=10 Score=29.73 Aligned_cols=31 Identities=6% Similarity=0.013 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 34 LKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 34 LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
|++-.++...|+..|+.++..|+++++.|+.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444467778999999999999999988764
No 11
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=56.02 E-value=5.9 Score=31.26 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
-|.|---=-..=||+|-.|+++||+++..||+.=
T Consensus 35 FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 35 FLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445679999999999999999999975
No 12
>3sy7_A Porin D; beta-barrel, channel, outer membrane, membrane protein; HET: C8E; 2.15A {Pseudomonas aeruginosa} PDB: 2odj_A*
Probab=54.02 E-value=1.9e+02 Score=29.24 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=62.1
Q ss_pred eEEEEEecCceEEEeeeeccCC-C-CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccce
Q 014833 208 AIGFTVRKSNVVASLAQSVSGL-G-VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGF 285 (417)
Q Consensus 208 Gig~~~~~~~~~~sl~yl~~~~-g-~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~ 285 (417)
|+.+.+|.++..+.+|++.... - .++....+...|.. +||+.+..+++.|...|++++....... ......
T Consensus 101 gaa~K~r~s~T~lk~G~~~p~~P~l~~~d~RllP~Tf~G-~~l~s~ei~~LtL~ag~~~~~~~r~~~~--~~~~~~---- 173 (428)
T 3sy7_A 101 GGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATG-VQLQSSEFEGLDLEAGHFTEGKEPTTVK--SRGELY---- 173 (428)
T ss_dssp EEEEEEEETTEEEEEEEECCCCTTBCCCCSSSSCCCEEE-EEEEECCSTTEEEEEEEEEC-------------CEE----
T ss_pred eeEEEEEecCcEEEEEEEEEecceEECCCCcCCccceee-EEEeccccCCeEEEEEEEEEecCCcccc--cccccc----
Confidence 4666777667889999877542 1 12233457888876 8999999999999999999985422110 000000
Q ss_pred eccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEE
Q 014833 286 LKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQ 337 (417)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~ 337 (417)
.+. . ...+. .-+-+-++|++++++++..|.+.-
T Consensus 174 ------------~~~-----~-~~~~d-~~~~~G~~Y~~~~~l~~~~~y~~l 206 (428)
T 3sy7_A 174 ------------ATY-----A-GETAK-SADFIGGRYAITDNLSASLYGAEL 206 (428)
T ss_dssp ------------ETT-----T-TEEES-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------ccc-----C-CCCCC-ceEEEEEEEecCCCeEEEEEeeec
Confidence 000 0 01111 233366789999999999997654
No 13
>3sy9_A Histidine porin OPDC; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E BOG; 2.80A {Pseudomonas aeruginosa}
Probab=52.34 E-value=2e+02 Score=29.06 Aligned_cols=108 Identities=8% Similarity=-0.136 Sum_probs=64.6
Q ss_pred eEEEEEecCceEEEeeeeccCC-C-CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccce
Q 014833 208 AIGFTVRKSNVVASLAQSVSGL-G-VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGF 285 (417)
Q Consensus 208 Gig~~~~~~~~~~sl~yl~~~~-g-~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~ 285 (417)
|+.+.+|.++..+.+|.+.... - .+.....+...|.. +||+.+..+++.|...|+.++........ ..+...
T Consensus 105 Ga~lK~r~s~T~lK~G~q~p~~P~l~~~d~RllP~Tf~G-~~l~s~ei~~LtL~ag~~~~~~~r~~~~~--~~l~~~--- 178 (430)
T 3sy9_A 105 GAALKIRAFDTELKLGDQFLSNPVVAGGESRMLPQTFRG-VSLTNNSFEDLTLTAGQVSFTKYYNQSGH--RRLGSY--- 178 (430)
T ss_dssp EEEEEEEETTEEEEEEEECCEETTEECCSSSSSCCCEEE-EEEEECSSTTEEEEEEEEEECCCCC---------------
T ss_pred heeEEEecCCcEEEEEEEEecccEEEcCCcccCccceeE-EEEEeeecCCeEEEEEEEEEEecCCcccc--cccccc---
Confidence 4667777677888899776542 1 12233456778876 89999999999999999999854322100 000000
Q ss_pred eccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEEe
Q 014833 286 LKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQN 338 (417)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~~ 338 (417)
..+.+ ....+..-+-+-++|++++++++..|.+.-+
T Consensus 179 -----------~~~~~------~~~~~d~~~~~G~~Y~~~~~l~~~~~~~~le 214 (430)
T 3sy9_A 179 -----------YGELP------GDRDSHHLSWLGGTWGGIEGFTSSLYAAELQ 214 (430)
T ss_dssp -------------------------CCEEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred -----------cCCcc------ccccCCceEEEEEEEecCCCeEEEEEhhcch
Confidence 00000 0011113444677999999999999987653
No 14
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=52.25 E-value=19 Score=26.01 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
.|+.||.-|..==..+=+|+|..-.|+..||.+
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~s 46 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 678888888876677778888888888888865
No 15
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=51.76 E-value=7.7 Score=30.47 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=22.8
Q ss_pred HhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 40 ESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 40 EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
=-..=|+.|-.|+++||+++..|||.-
T Consensus 42 sce~KLa~ln~kL~~lE~~L~iLEAkl 68 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVDYLEATF 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999999863
No 16
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.57 E-value=9.8 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 43 SEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 43 aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
..+..|..||+.||..++.|++.|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~~~ 72 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTSDE 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566778888888888888887653
No 17
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=47.18 E-value=19 Score=29.34 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 29 NPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 29 ~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
-|.+=..||..+|+..|...|..++.||+.++.+...+
T Consensus 5 ~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~ 42 (93)
T 3t98_B 5 APADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNS 42 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 36788899999999999999999999999999977534
No 18
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.91 E-value=18 Score=28.64 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=41.6
Q ss_pred hHHHHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 5 TSAVEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..|=||++.-+...+... .-+|++|+|-|+|...==.+|-+=+..||...+.++.+
T Consensus 6 SAVeDKLRrrl~E~~~q~-----qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~n 61 (78)
T 3iv1_A 6 SAVSDKLRWRMKEEMDRA-----QAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKN 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 446677776655555554 56799999999998888888888888888777777654
No 19
>3szd_B Porin; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E 3PE; 2.31A {Pseudomonas aeruginosa} PDB: 3jty_A*
Probab=46.35 E-value=1.7e+02 Score=29.39 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=45.3
Q ss_pred eEEEEEecCceEEEeeeeccCCC--CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCC
Q 014833 208 AIGFTVRKSNVVASLAQSVSGLG--VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKS 269 (417)
Q Consensus 208 Gig~~~~~~~~~~sl~yl~~~~g--~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~ 269 (417)
|+.+.+|.++..+.+|++....- .++....+...|.. +||+.+..+++.|...|+.+|...
T Consensus 99 g~a~K~r~s~T~lK~G~q~p~~Pvl~~~d~RllP~tf~G-~~l~s~ei~~LtL~ag~~~~~~~r 161 (405)
T 3szd_B 99 AVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRG-GQLSANEIAGLTLYAGQFRGNSPR 161 (405)
T ss_dssp EEEEEEEETTEEEEEEEECCEETTEECCCSSSSCCEEEE-EEEEECCSTTEEEEEEEEEEEECT
T ss_pred heeEEEEecCcEEEEEEEEEcccEEECCCceECccceeE-EEEEeeccCCeEEEEEEEEeeecC
Confidence 45677777778899997765421 12234457878876 799999999999999999998653
No 20
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.76 E-value=11 Score=26.26 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=22.3
Q ss_pred HHHHHHHhH--HHHHHhhhhHHHHHHhhhhhhh
Q 014833 34 LKRLQRESF--SEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 34 LkRLQ~EF~--aELatLr~RvD~LE~Rta~lEa 64 (417)
||-|..|=| .||+.|...+.+||..++-|++
T Consensus 9 lqalkkegfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 9 LQALKKEGFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545533 4788898899999988887765
No 21
>2x9k_A OMPG, outer membrane protein G; transport protein, ION transport; HET: BOG; 2.18A {Escherichia coli} PDB: 2f1c_X* 2iwv_A* 2iww_A* 2jqy_A 2wvp_A*
Probab=45.28 E-value=77 Score=30.69 Aligned_cols=21 Identities=14% Similarity=0.569 Sum_probs=17.7
Q ss_pred eEEEEEEee--cCCeEEEEEEeE
Q 014833 316 IALKLETEL--DENAKVGGWFEM 336 (417)
Q Consensus 316 ~g~q~~~~i--~~~~~lgGW~g~ 336 (417)
|-+|-+|++ ++++++.||+.+
T Consensus 112 y~~~P~w~y~l~d~~~f~gwl~~ 134 (280)
T 2x9k_A 112 WKIAPDWDVKLTDDLRFNGWLSM 134 (280)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEE
T ss_pred EEeccCceEEecCCeEEEeeeeE
Confidence 777777666 999999999876
No 22
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.19 E-value=30 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
.|++-.++...|+..|+.+.+.|.+++..|+.
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455778889999999999999998874
No 23
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=41.76 E-value=14 Score=35.72 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 36 RLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 36 RLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
|.-|=+.-|.|-+|-|+..||+|++-||+
T Consensus 246 RydE~~~leaA~~rr~~~~learlaaLE~ 274 (275)
T 3gw6_A 246 RPDGIFFAEAAYQRRKLERIEARLSALEQ 274 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445688999999999999999999996
No 24
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.97 E-value=39 Score=26.40 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=24.3
Q ss_pred CCCChHHHHHHHHH---HhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 26 YSRNPIEILKRLQR---ESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~---EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
++-|-.-+|+.||+ +--.||...-+|++.||.++.++|+
T Consensus 13 ~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 13 ASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554 4467788888889999999888775
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.93 E-value=25 Score=25.65 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=20.8
Q ss_pred hHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 41 SFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 41 F~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
.-.|++.||.|++.|.++.++|++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999988763
No 26
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=37.62 E-value=31 Score=33.43 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHH-----------HhhhhHHHHHHhhhhhhhCC
Q 014833 31 IEILKRLQRESFSEQM-----------KQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 31 L~~LkRLQ~EF~aELa-----------tLr~RvD~LE~Rta~lEa~Q 66 (417)
|.=|-+..+|.|.||. .|..||++||+++..++..+
T Consensus 41 L~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~~ 87 (279)
T 3p8c_D 41 LSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKE 87 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4445667777776664 67888888888888877776
No 27
>2y0h_A Probable porin, OPDL; transport protein, outer membrane, OPRD; HET: C8E; 2.20A {Pseudomonas aeruginosa} PDB: 3t0s_A*
Probab=35.38 E-value=3.3e+02 Score=26.68 Aligned_cols=103 Identities=8% Similarity=0.005 Sum_probs=62.5
Q ss_pred EEEEecCceEEEeeeeccCCC--CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccceec
Q 014833 210 GFTVRKSNVVASLAQSVSGLG--VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIGFLK 287 (417)
Q Consensus 210 g~~~~~~~~~~sl~yl~~~~g--~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g~~~ 287 (417)
.+.++.++..+.+|......- ...........|.+ ++|+.++.+++.|...|++++........ ..+..
T Consensus 96 ~lk~k~~~t~lk~G~q~~~~P~~~~~d~R~lP~tf~G-~~~~~~~i~~ltl~~g~~~~~~~~~~~~~--~~~~~------ 166 (391)
T 2y0h_A 96 TAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDG-ALLTSSEIEGLTLTAGQLWKSRTRESAGS--DDMYI------ 166 (391)
T ss_dssp EEEEEETTEEEEEEEECCEETTEECCCSSSSCCEEEE-EEEEECCSTTEEEEEEEEEEEECCCC-----CCBCB------
T ss_pred eEEEEeCCcEEEEEEEeccccEEECCCCcCCccceee-EEEEccccCCEEEEEEEEEEEcCCCcCcc--cceee------
Confidence 467777778888886654320 11122345667776 79999999999999999999864322110 00000
Q ss_pred cccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEE
Q 014833 288 QRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQ 337 (417)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~ 337 (417)
.. .. ....+..-+-+.+.|++++.+++.+|.+.-
T Consensus 167 ----------~~-----~~-~~~~~~~~~~~g~~Y~~~~~l~~~~~~~~~ 200 (391)
T 2y0h_A 167 ----------MG-----RD-KAHASDEFNLAGATYAFTPRLSASYYYGQL 200 (391)
T ss_dssp ----------TT-----SC-TTSCBSCEEEEEEEEESSSSEEEEEEEEEE
T ss_pred ----------ec-----cC-CCccCCceEEEEEEEecCCCeEEEEEehhh
Confidence 00 00 001120234577899999999999998765
No 28
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=33.90 E-value=25 Score=25.80 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=13.4
Q ss_pred HHHhhhhHHHHHHhhhhhhh
Q 014833 45 QMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 45 LatLr~RvD~LE~Rta~lEa 64 (417)
+..|..|++.||..++.|++
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777776665
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.39 E-value=29 Score=29.42 Aligned_cols=40 Identities=20% Similarity=0.048 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 26 YSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..+++|--|+|--+...+||..|++.-..||+.++..|.+
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4577888888888889999999999999999999988865
No 30
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.96 E-value=31 Score=27.45 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=24.5
Q ss_pred HHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 39 RESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 39 ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++...|++.|||.++.+...+..++..|
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3788899999999999999999888766
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.95 E-value=42 Score=28.99 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 28 RNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 28 r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
+.+|..+|.=-++...|+..|+.+++.|+.+...||++.
T Consensus 95 K~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 95 KHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777778888999999999999999999999764
No 32
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=32.29 E-value=20 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=13.9
Q ss_pred HHHHHhhhhHHHHHHhhhhhh
Q 014833 43 SEQMKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 43 aELatLr~RvD~LE~Rta~lE 63 (417)
.++..|..||+.||..+..|.
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 577888888888888777653
No 33
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.01 E-value=45 Score=25.31 Aligned_cols=38 Identities=24% Similarity=0.061 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 29 NPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 29 ~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
++....++-|.+...+|.-+...++.||.-+.-||..=
T Consensus 19 ~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 19 REVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999998754
No 34
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.44 E-value=34 Score=28.88 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 26 YSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 26 ~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
..+++|--|+|--+...+||..|+++...||+.++..|.+
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4577888888888889999999999999999999988865
No 35
>2y0l_A OPDO, CIS-aconitate porin OPDH; transport protein, outer membrane, OPRD; 2.59A {Pseudomonas aeruginosa} PDB: 3t20_A
Probab=31.39 E-value=3.9e+02 Score=26.32 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=42.0
Q ss_pred EEEEecCceEEEeeeeccCCC--CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCC
Q 014833 210 GFTVRKSNVVASLAQSVSGLG--VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPK 268 (417)
Q Consensus 210 g~~~~~~~~~~sl~yl~~~~g--~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~ 268 (417)
.+.|+.++..+.+|......- ...........|.+ ++|+.++.+++.|...|++++..
T Consensus 106 ~lk~k~~~t~lk~G~q~~~~P~~~~~d~R~lP~tf~G-~~l~~~~i~~ltl~~g~~~~~~~ 165 (402)
T 2y0l_A 106 TAKVKVSQSELKVGTLIPKLPSVQPNNGRIFPQIFEG-ALLTSKEIKDLGFTAGRLEKTKI 165 (402)
T ss_dssp EEEEEETTEEEEEEEECCCBTTBEECCSSSSCCEEEE-EEEEECSSTTEEEEEEEEEEEEC
T ss_pred eEEEEeCCcEEEEeEEeccccEEECCCCcCCccceeE-EEEEcceeCCEEEEEEEEEEEcC
Confidence 477777778889996655421 11123345667776 79999999999999999999864
No 36
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=30.88 E-value=45 Score=27.96 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHhhh
Q 014833 36 RLQRESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 36 RLQ~EF~aELatLr~RvD~LE~Rta 60 (417)
..+++...++..|++|+|+||++..
T Consensus 111 ~~~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 111 AAEEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788999999999998754
No 37
>3syb_A Glycine-glutamate dipeptide porin OPDP; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 2.70A {Pseudomonas aeruginosa}
Probab=30.85 E-value=4.5e+02 Score=26.90 Aligned_cols=105 Identities=9% Similarity=-0.024 Sum_probs=65.5
Q ss_pred e-EEEEEecCceEEEeeeeccCCC--CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCCCCCCccCCCCcccccc
Q 014833 208 A-IGFTVRKSNVVASLAQSVSGLG--VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPKSRNHRVSLRPLTIPIG 284 (417)
Q Consensus 208 G-ig~~~~~~~~~~sl~yl~~~~g--~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~~~~~~~~~g~~~~~~g 284 (417)
| +.+.+|.++..+.+|.+....- .......+...|.. +||+.+..+++.|...|+.++.......+ ..+..
T Consensus 142 Gqaa~K~r~s~T~lK~G~q~p~~Pvl~~~dsRlLP~Tf~G-~~l~s~ei~~LtL~aG~~~k~~~R~ss~~--~~~~~--- 215 (467)
T 3syb_A 142 GVANIRLRASNTEFKAGRFLVNTPVFSYIDNRALPSSFTG-FAVTSEELDNLSLQAGSFRKVSPRTGSGD--EDMTT--- 215 (467)
T ss_dssp EEEEEEEEETTEEEEEEEECCEETTEECCCSSSSCCEEEE-EEEEEEEETTEEEEEEEEEEEECTTCSSC--BCBCB---
T ss_pred hheEEEEEecCcEEEEEEEEecccEEECCCceEChhhceE-EEEEeeecCCeEEEEEEEEEEcCCCcccc--cccce---
Confidence 5 6677776778899997765421 12234457778876 79999999999999999999854322110 00000
Q ss_pred eeccccccCCccCCCCccCCCCccceeecceeEEEEEEeecCCeEEEEEEeEE
Q 014833 285 FLKQRNASENSVGASASSLGMNTQEIVSTGSIALKLETELDENAKVGGWFEMQ 337 (417)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ns~g~q~~~~i~~~~~lgGW~g~~ 337 (417)
... .....+. .-+-+-++|++++++++..|.+.-
T Consensus 216 -------------~~~-----~~~~~sd-~~~~~G~~Y~~~~~L~~s~~y~~l 249 (467)
T 3syb_A 216 -------------EYG-----TRQVKGD-RLNYLGGNYKPLDGLEISLYGSHF 249 (467)
T ss_dssp -------------SSS-----CSCCCBC-CEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -------------ecC-----CCccccC-ceEEEEEEEecCCCeEEEEEhhcc
Confidence 000 0000111 233366799999999999997654
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.40 E-value=23 Score=27.86 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=14.5
Q ss_pred HhhhhHHHHHHhhhhhhh
Q 014833 47 KQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 47 tLr~RvD~LE~Rta~lEa 64 (417)
.|-.|++.||-|+|+.|+
T Consensus 11 ~le~Ri~~LE~klAfqE~ 28 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQ 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455789999999998875
No 39
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=30.13 E-value=51 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.8
Q ss_pred HHhHHHHHHhhhhHHHHHHhhh
Q 014833 39 RESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 39 ~EF~aELatLr~RvD~LE~Rta 60 (417)
|-...---.|-+|.|.||+++.
T Consensus 7 eay~~atRALHeRFDRLEr~ld 28 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERMLD 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344678999999999874
No 40
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.11 E-value=94 Score=26.51 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=34.8
Q ss_pred hHHHHhHHHH---hhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhh
Q 014833 5 TSAVEKVKGF---IDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lE 63 (417)
..++.|.|.+ |+++= ..+ ..-.+-++.|++|++|-..-=..|+..|..-|..+..++
T Consensus 64 ~dli~k~kqIe~LIdsLP-~~~-~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 64 TDIILKTRQINKLIDSLP-GVD-VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHST-TTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555655 66442 222 122344889999998877766667777766666666554
No 41
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=29.71 E-value=1.2e+02 Score=26.06 Aligned_cols=32 Identities=6% Similarity=-0.074 Sum_probs=26.2
Q ss_pred CCcceEEEEEEeeccCCceEEeeeeEEEEcCC
Q 014833 372 GWNQYQLESFLDLCLGKRFSLKLGTSYVADGD 403 (417)
Q Consensus 372 ~dts~hiEafYky~l~dnIsITPGli~i~np~ 403 (417)
.+.+.-+-++|+|+++|++.|-+++-|.-.-+
T Consensus 24 ~~~~~G~~~~~gY~~~~~lgve~~~~y~~~~~ 55 (157)
T 3qra_A 24 DKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGF 55 (157)
T ss_dssp BCCCEEEEEEEEEESSSSEEEEEEEEEEEECC
T ss_pred ccCCCEEEEEEeeecCCCeEEEEEEEEecCcc
Confidence 35677778899999999999999998776443
No 42
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.69 E-value=89 Score=27.40 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=32.2
Q ss_pred hHHHHhHHHH---hhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhh
Q 014833 5 TSAVEKVKGF---IDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lE 63 (417)
..++.|.|++ |+++= ..+ ..-.+-++.|++|++|-...=..|+..|..-|..+..++
T Consensus 64 ~dli~kakqIe~LIdsLP-g~~-~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 64 TDIILKTRQINKLIDSLP-GVD-VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHCT-TSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565655 66442 222 122344888999998876655555555555555555444
No 43
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.59 E-value=31 Score=24.33 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.9
Q ss_pred hhHHHHHHhhhhhh
Q 014833 50 DRLDKVERLLSFYK 63 (417)
Q Consensus 50 ~RvD~LE~Rta~lE 63 (417)
.|.+.||.|+..||
T Consensus 16 ~r~e~LE~Ri~~LE 29 (43)
T 2pnv_A 16 ERSEDFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 34444444444443
No 44
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.98 E-value=63 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 34 LKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 34 LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
|+.-.++...|...|+.+++.|.+++..|
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344567788899999999999888754
No 45
>2y2x_A OPDK, vanillate porin OPDK; membrane protein, outer membrane, OPRD, transport; HET: C8E VNL; 1.65A {Pseudomonas aeruginosa PA01} PDB: 2qtk_A* 3sys_A*
Probab=28.81 E-value=4.2e+02 Score=25.91 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=42.2
Q ss_pred EEEEEecCceEEEeeeeccCCC--CCCCCCCCCCCccceEeEEEEeCCCceeeEEEeeecCC
Q 014833 209 IGFTVRKSNVVASLAQSVSGLG--VQLGSDGIGHCLSTFGQVVCQLSRGVNLSLMGLHQVPK 268 (417)
Q Consensus 209 ig~~~~~~~~~~sl~yl~~~~g--~p~~~~gf~g~ysalgQl~~~P~~~~~lsltY~~~y~~ 268 (417)
+-+.++.++..+.+|......- ...........|.+ ++|+.++.+++.|...|++++..
T Consensus 97 a~~k~~~~~t~lk~G~q~~~~P~~~~~d~R~lPqtf~G-~~l~~~~i~~ltl~~g~~~~~~~ 157 (390)
T 2y2x_A 97 VAAKLRVSASELKIGEMLPDIPLLRYDDGRLLPQTFRG-FAVVSRELPGLALQAGRFDAVSL 157 (390)
T ss_dssp EEEEEEETTEEEEEEEECCEETTEECCCSSSSCCEEEE-EEEEECCSTTEEEEEEEEEEEEC
T ss_pred eEEEEEeCceEEEEeEEEeccceEECCCCcCChhheeE-EEEEeeecCCeEEEEEEEEEEcC
Confidence 4667776778888886654321 11123345777776 79999999999999999999864
No 46
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.64 E-value=34 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=13.0
Q ss_pred HhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 40 ESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 40 EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
|.++.-..|-.|...||.|++.|+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555543
No 47
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=28.54 E-value=62 Score=23.06 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=26.0
Q ss_pred CCCChHHHHHH-HHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 26 YSRNPIEILKR-LQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 26 ~~r~dL~~LkR-LQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
++..|++.+|+ +-+|+-.||.+++. +=+||..++|
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK~K~--EIIeAi~~El 39 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQKVKE--EIIEAFVQEL 39 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 55678888875 77899999998875 4466666655
No 48
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=28.50 E-value=40 Score=24.29 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 014833 32 EILKRLQRESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 32 ~~LkRLQ~EF~aELatLr~RvD~LE~Rta 60 (417)
+..+.+..+...=+-....|+|.||+-++
T Consensus 20 ~kFq~mS~~I~~riDdM~~RIDdLE~si~ 48 (48)
T 3ci9_A 20 DKFQTISDQIIGRIDDMSSRIDDLEKNIA 48 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 35667778888888899999999998653
No 49
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=28.26 E-value=53 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHhhhhHHHHHHhhh
Q 014833 37 LQRESFSEQMKQRDRLDKVERLLS 60 (417)
Q Consensus 37 LQ~EF~aELatLr~RvD~LE~Rta 60 (417)
+++.+..++..|++|++.||++..
T Consensus 139 ~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 139 AEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567777888888888887654
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.49 E-value=33 Score=27.16 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=16.8
Q ss_pred HHHHhhhhHHHHHHhhhhhhhCC
Q 014833 44 EQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 44 ELatLr~RvD~LE~Rta~lEa~Q 66 (417)
||.+|-.++++||++.+.|++.-
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888877777654
No 51
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=24.50 E-value=28 Score=25.09 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=10.5
Q ss_pred hhhHHHHHHhhhhhh
Q 014833 49 RDRLDKVERLLSFYK 63 (417)
Q Consensus 49 r~RvD~LE~Rta~lE 63 (417)
++.++.||.|++.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 456777888888877
No 52
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.29 E-value=69 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 34 LKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 34 LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
|++|..|.-..+..|++||-.||+-+++-
T Consensus 31 le~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 31 LENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888889888888877764
No 53
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.87 E-value=22 Score=27.64 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=31.3
Q ss_pred HHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhh
Q 014833 8 VEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLL 59 (417)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rt 59 (417)
|++|.+++. .+.-..++.|.++|...-+|+|.-++.||++=
T Consensus 4 L~~Il~~L~-----------~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 4 LIQVRDLLA-----------LRGRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHHHH-----------HSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----------HcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 556666664 23345678899999999999999999998764
No 54
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=23.77 E-value=3.6e+02 Score=25.10 Aligned_cols=69 Identities=6% Similarity=-0.157 Sum_probs=43.8
Q ss_pred ceeEEEEEEeecCCeEEEEEEeEEeccceEEEEeEEeecCCCCcccceeecceecCCCCCcceEEEEEEeeccCCceEEe
Q 014833 314 GSIALKLETELDENAKVGGWFEMQNSNSNLRWAVTISDIFNEDLEWGVTFSGMHDGSKGWNQYQLESFLDLCLGKRFSLK 393 (417)
Q Consensus 314 ns~g~q~~~~i~~~~~lgGW~g~~~~~~iw~wavtla~~~e~dlG~g~~~gg~~~~~d~dts~hiEafYky~l~dnIsIT 393 (417)
-+.|+-+.|..+..+-+.+|+.|.+-+. -+...+ .+.. ....- ..-....+|+=|+|++++++.|+
T Consensus 109 ~~~g~Y~~~~~~~g~y~d~~~~~~~~~~----~~~~~~---~~~~-~~~y~------~~~~~~s~e~Gy~~~l~~~~~le 174 (308)
T 3aeh_A 109 WGGGFYASGLFRSGAYFDVIAKYIHNEN----KYDLNF---AGAG-KQNFR------SHSLYAGAEVGYRYHLTDTTFVE 174 (308)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEE----EEEECS---TTCE-EEEEE------EEEEEEEEEEEECEESSSSEEEE
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEEEee----EEEEec---CCcc-cCcee------eeEEEEEEEeEEEEecCCCeEEe
Confidence 4566777788877899999998874321 112222 1111 11111 12345688999999999999999
Q ss_pred eee
Q 014833 394 LGT 396 (417)
Q Consensus 394 PGl 396 (417)
|=+
T Consensus 175 P~a 177 (308)
T 3aeh_A 175 PQA 177 (308)
T ss_dssp EEE
T ss_pred eEE
Confidence 955
No 55
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.73 E-value=1.1e+02 Score=26.03 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=39.1
Q ss_pred hHHHHhHHHHhhhcccCCCC--CCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhCC
Q 014833 5 TSAVEKVKGFIDSLFHRSQN--SYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~Q 66 (417)
-..++++..++..+.+-..+ .+++ +-++.+.+|....|..|..-++.||+=+.-.|.+-
T Consensus 37 q~sl~~l~~l~~~w~~l~~~~~~~s~---~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 37 QKAVNTARGLYQRWCELLQESAAVGR---EELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp HHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 34566777776665433222 2223 34677889999999999999999999888777653
No 56
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.70 E-value=90 Score=25.26 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhh
Q 014833 33 ILKRLQRESFSEQMKQRDRLDKVERLLSFYKL 64 (417)
Q Consensus 33 ~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa 64 (417)
.|+-+...+..|+..+.+.+..||+.++.+++
T Consensus 27 ~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 27 RIQELEDLLAKEKDNSRRMLTDKEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999887654
No 57
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.56 E-value=84 Score=19.52 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.0
Q ss_pred HHHhHHHHHHhhhhHHHHHHhh
Q 014833 38 QRESFSEQMKQRDRLDKVERLL 59 (417)
Q Consensus 38 Q~EF~aELatLr~RvD~LE~Rt 59 (417)
..|...||..|.+|+.+|-..+
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888999999998886543
No 58
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.56 E-value=70 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.0
Q ss_pred HHHhhhhHHHHHHhhhhhhhC
Q 014833 45 QMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 45 LatLr~RvD~LE~Rta~lEa~ 65 (417)
|..|-.|+..||.|.++||..
T Consensus 5 l~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888864
No 59
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.24 E-value=88 Score=26.07 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhh
Q 014833 31 IEILKRLQRESFSEQMKQRDRLDKVERLLSFY 62 (417)
Q Consensus 31 L~~LkRLQ~EF~aELatLr~RvD~LE~Rta~l 62 (417)
.+.|++..++-..|+..|+.++..||..+...
T Consensus 84 ~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455545555689999999999999876553
No 60
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.77 E-value=75 Score=31.09 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhHH----------------HHHHhhhhHHHHHHhhhhhhhCC
Q 014833 30 PIEILKRLQRESFS----------------EQMKQRDRLDKVERLLSFYKLSK 66 (417)
Q Consensus 30 dL~~LkRLQ~EF~a----------------ELatLr~RvD~LE~Rta~lEa~Q 66 (417)
|..+||||.+-|.. +|+.++.+.-.+|+-++.++.+.
T Consensus 246 d~qk~qRl~q~~~~fv~~hl~vaF~~dPe~~l~~~~~~~~~~~r~l~~~~~~~ 298 (302)
T 3ibp_A 246 DVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHENDN 298 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhhchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78899999999998 99999999999999999887754
No 61
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=22.43 E-value=37 Score=27.38 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhH
Q 014833 30 PIEILKRLQRESF 42 (417)
Q Consensus 30 dL~~LkRLQ~EF~ 42 (417)
-|.-|||+||+|.
T Consensus 60 ~LsQLKRvQRdlr 72 (87)
T 2rf4_B 60 SISQLKRIQRDFK 72 (87)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 4889999999984
No 62
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.96 E-value=1.1e+02 Score=24.18 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhhhC
Q 014833 30 PIEILKRLQRESFSEQMKQRDRLDKVERLLSFYKLS 65 (417)
Q Consensus 30 dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lEa~ 65 (417)
|.+.|+....+...--..|.+.++.|++.++.|.+.
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567777888888887888888888888888777665
No 63
>3qq2_A BRKA autotransporter; beta barrel, transmembrane, membrane protein-protein transpo complex; 3.00A {Bordetella pertussis}
Probab=21.89 E-value=2.4e+02 Score=25.78 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=42.4
Q ss_pred ceeEEEEEEeecCCeEEEEEEeEEeccceEEEEeEEeecCCCCcccceeecceecCCCCCcceEEEEEEeeccCCceEEe
Q 014833 314 GSIALKLETELDENAKVGGWFEMQNSNSNLRWAVTISDIFNEDLEWGVTFSGMHDGSKGWNQYQLESFLDLCLGKRFSLK 393 (417)
Q Consensus 314 ns~g~q~~~~i~~~~~lgGW~g~~~~~~iw~wavtla~~~e~dlG~g~~~gg~~~~~d~dts~hiEafYky~l~dnIsIT 393 (417)
-+.|+-+.|.....+-+.+|+.|..-+.-.+ ....+ ++.. ....- ..--...+|+=|+|++++++.|+
T Consensus 90 ~~~g~Y~~~~~~~g~y~d~~~~y~~~~~~~~--~~~~~---g~~~-~~~~~------~~~~~~~~e~Gy~~~~~~~~~l~ 157 (284)
T 3qq2_A 90 LHVGGYAAYVGDGGYYLDTVLRLGRYDQQYN--IAGTD---GGRV-TADYR------TSGAAWSLEGGRRFELPNDWFAE 157 (284)
T ss_dssp EEEEEEEEEEESSSEEEEEEEEEEEEEEEEE--CCCSS---SCCC-EEEEE------EEEEEEEEEEEECEECGGGEEEE
T ss_pred eEEEEEEEEECCCCEEEEEEEeeeEEEeeEE--EEecC---Ccee-ccccc------cceEEEEEecCeEEecCCCEEEe
Confidence 4556677788877899999998875432000 10011 1111 01111 12356688999999999999999
Q ss_pred eee
Q 014833 394 LGT 396 (417)
Q Consensus 394 PGl 396 (417)
|=+
T Consensus 158 P~a 160 (284)
T 3qq2_A 158 PQA 160 (284)
T ss_dssp EEE
T ss_pred eee
Confidence 954
No 64
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=21.86 E-value=1.3e+02 Score=28.36 Aligned_cols=23 Identities=9% Similarity=-0.076 Sum_probs=16.9
Q ss_pred cceEEEEEEeeccCCceEEeeee
Q 014833 374 NQYQLESFLDLCLGKRFSLKLGT 396 (417)
Q Consensus 374 ts~hiEafYky~l~dnIsITPGl 396 (417)
.+..+|+=|+|++++++.|+|=+
T Consensus 155 ~~~~~e~Gy~~~~~~~~~l~P~a 177 (308)
T 1uyn_X 155 MQLGALGGVNVPFAATGDLTVEG 177 (308)
T ss_dssp EEEEEEEEECCC---CCEEEEEE
T ss_pred EEEEeecceeEecCCceEEEEEE
Confidence 35689999999999999999943
No 65
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.45 E-value=1.4e+02 Score=24.72 Aligned_cols=44 Identities=11% Similarity=-0.054 Sum_probs=35.6
Q ss_pred HHhHHHHhhhcccCCCCCCCCChHHHHHHHHHHhHHHHHHhhhhHHHHHHhhhhhh
Q 014833 8 VEKVKGFIDSLFHRSQNSYSRNPIEILKRLQRESFSEQMKQRDRLDKVERLLSFYK 63 (417)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~dL~~LkRLQ~EF~aELatLr~RvD~LE~Rta~lE 63 (417)
+|.+.++++ +| ++.|++-.++...++..++.++..++..+.++.
T Consensus 86 ~~eA~~~l~---~r---------~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 86 FEDAMESIK---SQ---------KNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHH---HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666665 44 889999999999999999999999998887654
Done!