Query 014834
Match_columns 417
No_of_seqs 482 out of 2183
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0059 IlvC Ketol-acid reduct 100.0 6.9E-74 1.5E-78 559.1 27.0 288 106-416 14-307 (338)
2 PRK13403 ketol-acid reductoiso 100.0 8.9E-68 1.9E-72 525.7 28.5 284 104-411 10-299 (335)
3 PRK05225 ketol-acid reductoiso 100.0 3.2E-68 6.9E-73 545.8 25.8 312 71-416 1-330 (487)
4 PRK05479 ketol-acid reductoiso 100.0 3.3E-63 7.2E-68 496.6 29.2 288 105-415 12-305 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 1.4E-60 3E-65 475.8 29.4 281 108-411 1-286 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 4.1E-40 9E-45 298.8 14.5 160 108-287 2-162 (165)
7 COG0345 ProC Pyrroline-5-carbo 100.0 5.6E-37 1.2E-41 299.2 22.7 219 111-366 1-230 (266)
8 PRK12491 pyrroline-5-carboxyla 100.0 6.1E-35 1.3E-39 285.9 23.1 221 112-367 3-234 (272)
9 PRK06928 pyrroline-5-carboxyla 100.0 7.2E-32 1.6E-36 264.2 23.7 220 111-366 1-234 (277)
10 PTZ00431 pyrroline carboxylate 100.0 2.8E-30 6.1E-35 250.7 22.2 214 112-367 4-227 (260)
11 KOG3124 Pyrroline-5-carboxylat 100.0 2E-30 4.4E-35 249.3 16.0 225 112-372 1-238 (267)
12 PRK07679 pyrroline-5-carboxyla 100.0 9.6E-29 2.1E-33 241.7 24.6 220 112-366 4-235 (279)
13 PRK07634 pyrroline-5-carboxyla 100.0 2.9E-28 6.3E-33 232.2 21.9 221 112-367 5-235 (245)
14 PLN02688 pyrroline-5-carboxyla 100.0 1.1E-27 2.5E-32 231.2 25.9 219 112-367 1-231 (266)
15 PRK07680 late competence prote 100.0 2.9E-27 6.3E-32 230.4 23.5 218 112-366 1-231 (273)
16 PRK11880 pyrroline-5-carboxyla 100.0 1.8E-26 3.9E-31 223.0 24.9 222 111-367 2-232 (267)
17 PF01450 IlvC: Acetohydroxy ac 99.9 9.3E-28 2E-32 215.6 8.1 119 294-415 1-121 (145)
18 TIGR00112 proC pyrroline-5-car 99.9 1.5E-25 3.2E-30 216.2 19.3 198 141-367 10-214 (245)
19 PRK06476 pyrroline-5-carboxyla 99.9 9.9E-25 2.1E-29 210.8 21.5 216 112-367 1-224 (258)
20 PRK06545 prephenate dehydrogen 99.8 2.7E-20 5.8E-25 188.9 18.6 233 112-365 1-235 (359)
21 COG0287 TyrA Prephenate dehydr 99.8 1.7E-17 3.6E-22 163.8 22.1 253 112-397 4-262 (279)
22 PRK07417 arogenate dehydrogena 99.8 1.4E-17 3.1E-22 163.1 16.2 187 112-320 1-187 (279)
23 PRK14806 bifunctional cyclohex 99.8 3E-17 6.4E-22 180.1 19.1 229 112-365 4-240 (735)
24 PRK08655 prephenate dehydrogen 99.7 3.8E-16 8.3E-21 162.8 24.6 198 112-339 1-203 (437)
25 PRK08507 prephenate dehydrogen 99.7 3.9E-16 8.4E-21 152.4 21.4 195 112-336 1-204 (275)
26 PRK07502 cyclohexadienyl dehyd 99.7 5.6E-16 1.2E-20 153.6 19.6 192 112-321 7-200 (307)
27 PRK05225 ketol-acid reductoiso 99.7 2E-17 4.3E-22 171.4 8.9 108 298-411 348-456 (487)
28 PLN02256 arogenate dehydrogena 99.7 6.5E-15 1.4E-19 147.0 20.4 165 112-300 37-210 (304)
29 PRK12557 H(2)-dependent methyl 99.6 1.2E-14 2.6E-19 147.3 21.0 255 112-394 1-297 (342)
30 PRK06130 3-hydroxybutyryl-CoA 99.6 3.1E-14 6.8E-19 140.9 21.2 214 111-358 4-241 (311)
31 PF02153 PDH: Prephenate dehyd 99.6 2.5E-14 5.3E-19 139.3 17.6 193 126-336 1-195 (258)
32 TIGR01724 hmd_rel H2-forming N 99.6 4.4E-13 9.5E-18 134.2 23.9 226 112-363 1-261 (341)
33 PRK08818 prephenate dehydrogen 99.6 1.7E-13 3.8E-18 140.2 21.2 153 112-300 5-161 (370)
34 PLN02712 arogenate dehydrogena 99.6 1.6E-13 3.5E-18 149.9 22.0 195 106-330 365-564 (667)
35 COG2084 MmsB 3-hydroxyisobutyr 99.6 1.2E-14 2.6E-19 143.9 12.0 196 112-338 1-206 (286)
36 PRK11199 tyrA bifunctional cho 99.6 2.8E-13 6E-18 138.7 21.3 179 110-336 97-279 (374)
37 PRK05808 3-hydroxybutyryl-CoA 99.5 1.5E-13 3.2E-18 134.7 15.7 153 111-287 3-177 (282)
38 PRK07531 bifunctional 3-hydrox 99.5 9.2E-13 2E-17 139.4 21.0 194 111-341 4-220 (495)
39 PF03807 F420_oxidored: NADP o 99.5 6.2E-14 1.3E-18 115.3 8.6 90 113-213 1-96 (96)
40 PF03446 NAD_binding_2: NAD bi 99.5 1.4E-13 3E-18 124.8 10.5 149 111-286 1-155 (163)
41 PLN02712 arogenate dehydrogena 99.5 2E-12 4.3E-17 141.4 20.6 164 112-299 53-225 (667)
42 PLN02545 3-hydroxybutyryl-CoA 99.5 1.4E-12 3.1E-17 128.5 16.0 154 111-287 4-178 (295)
43 PRK00094 gpsA NAD(P)H-dependen 99.4 2.9E-12 6.3E-17 126.6 16.3 149 111-286 1-172 (325)
44 TIGR01915 npdG NADPH-dependent 99.4 4.5E-12 9.6E-17 120.2 15.7 156 112-287 1-183 (219)
45 PRK15059 tartronate semialdehy 99.4 1.1E-11 2.4E-16 122.9 18.0 196 112-337 1-203 (292)
46 PRK15461 NADH-dependent gamma- 99.4 9.9E-12 2.1E-16 123.1 16.9 201 111-341 1-209 (296)
47 PRK06129 3-hydroxyacyl-CoA deh 99.4 6.2E-11 1.3E-15 117.9 22.5 195 111-339 2-220 (308)
48 PRK12490 6-phosphogluconate de 99.4 2.5E-11 5.5E-16 120.3 19.5 147 112-286 1-154 (299)
49 TIGR00872 gnd_rel 6-phosphoglu 99.4 3.6E-11 7.9E-16 119.2 19.6 147 112-286 1-153 (298)
50 PRK06035 3-hydroxyacyl-CoA deh 99.4 2.9E-11 6.2E-16 119.2 17.2 152 111-287 3-180 (291)
51 PRK09260 3-hydroxybutyryl-CoA 99.4 4.8E-11 1E-15 117.4 18.6 149 111-287 1-176 (288)
52 PRK08293 3-hydroxybutyryl-CoA 99.3 2.2E-10 4.8E-15 112.8 22.6 212 111-362 3-247 (287)
53 PRK14618 NAD(P)H-dependent gly 99.3 1.1E-11 2.3E-16 124.0 13.0 195 111-338 4-238 (328)
54 TIGR01505 tartro_sem_red 2-hyd 99.3 5.7E-11 1.2E-15 116.8 17.7 193 113-339 1-205 (291)
55 TIGR01692 HIBADH 3-hydroxyisob 99.3 4.5E-11 9.7E-16 117.7 16.6 196 116-339 1-202 (288)
56 PF10727 Rossmann-like: Rossma 99.3 8.2E-12 1.8E-16 110.2 8.1 113 112-237 11-127 (127)
57 PLN02350 phosphogluconate dehy 99.3 8.1E-11 1.8E-15 124.7 17.1 152 111-286 6-167 (493)
58 PRK11559 garR tartronate semia 99.3 1.5E-10 3.2E-15 113.9 17.4 198 111-338 2-207 (296)
59 PRK09599 6-phosphogluconate de 99.3 1.6E-10 3.4E-15 114.7 17.5 147 112-286 1-154 (301)
60 PRK07530 3-hydroxybutyryl-CoA 99.3 1.3E-10 2.9E-15 114.4 16.8 148 111-287 4-178 (292)
61 PTZ00142 6-phosphogluconate de 99.3 3.5E-10 7.5E-15 119.4 19.6 151 111-287 1-162 (470)
62 PRK07066 3-hydroxybutyryl-CoA 99.2 3.6E-10 7.9E-15 113.9 18.5 152 111-287 7-178 (321)
63 TIGR00873 gnd 6-phosphoglucona 99.2 2.3E-10 5E-15 120.6 17.5 148 113-287 1-159 (467)
64 PRK12439 NAD(P)H-dependent gly 99.2 5.1E-10 1.1E-14 113.2 19.0 171 111-315 7-196 (341)
65 COG2085 Predicted dinucleotide 99.2 3.9E-10 8.5E-15 107.1 13.7 91 111-211 1-92 (211)
66 PRK08268 3-hydroxy-acyl-CoA de 99.2 1.4E-09 3E-14 115.8 18.4 149 110-287 6-181 (507)
67 PLN02858 fructose-bisphosphate 99.1 1.2E-09 2.6E-14 127.8 18.7 203 111-340 324-534 (1378)
68 TIGR03026 NDP-sugDHase nucleot 99.1 5.2E-09 1.1E-13 108.2 19.6 202 112-337 1-242 (411)
69 PF02826 2-Hacid_dh_C: D-isome 99.1 2.3E-10 5.1E-15 105.4 8.7 107 94-214 18-130 (178)
70 PRK13243 glyoxylate reductase; 99.1 3.4E-10 7.4E-15 114.4 10.4 107 93-213 125-242 (333)
71 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.1 3.1E-09 6.7E-14 113.1 17.7 153 111-287 5-179 (503)
72 PLN02858 fructose-bisphosphate 99.1 2.3E-09 4.9E-14 125.5 18.1 196 112-340 5-214 (1378)
73 PTZ00345 glycerol-3-phosphate 99.1 8.8E-09 1.9E-13 105.6 19.7 253 112-398 12-313 (365)
74 PRK07574 formate dehydrogenase 99.1 6.8E-10 1.5E-14 114.5 11.0 110 93-214 172-287 (385)
75 PRK14619 NAD(P)H-dependent gly 99.1 9.6E-09 2.1E-13 102.3 18.8 79 112-214 5-85 (308)
76 PRK07819 3-hydroxybutyryl-CoA 99.1 8.4E-09 1.8E-13 102.1 18.2 153 111-287 5-181 (286)
77 PLN03139 formate dehydrogenase 99.1 8.1E-10 1.8E-14 113.9 10.8 108 93-212 179-291 (386)
78 PRK06522 2-dehydropantoate 2-r 99.0 1.1E-08 2.3E-13 100.2 18.0 96 112-215 1-104 (304)
79 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 7.9E-10 1.7E-14 99.9 9.2 95 113-214 1-106 (157)
80 PRK11064 wecC UDP-N-acetyl-D-m 99.0 1.3E-08 2.7E-13 105.9 18.9 203 111-337 3-246 (415)
81 PRK12480 D-lactate dehydrogena 99.0 1.4E-09 3E-14 110.0 11.2 105 94-214 128-237 (330)
82 PRK14620 NAD(P)H-dependent gly 99.0 1.8E-08 4E-13 100.6 19.1 97 112-215 1-110 (326)
83 COG0111 SerA Phosphoglycerate 99.0 7.9E-10 1.7E-14 111.6 8.7 150 94-268 125-284 (324)
84 PRK08605 D-lactate dehydrogena 99.0 1.4E-09 3E-14 110.0 9.7 106 94-214 128-239 (332)
85 PRK06436 glycerate dehydrogena 99.0 1.5E-09 3.3E-14 108.6 9.8 102 93-212 106-209 (303)
86 KOG0409 Predicted dehydrogenas 99.0 1.3E-09 2.7E-14 108.2 8.3 149 112-287 36-192 (327)
87 COG1052 LdhA Lactate dehydroge 99.0 1.8E-09 4E-14 109.0 9.6 135 90-239 121-269 (324)
88 PF14748 P5CR_dimer: Pyrroline 99.0 1.6E-09 3.5E-14 92.8 7.8 69 298-367 1-75 (107)
89 PRK15409 bifunctional glyoxyla 99.0 2.5E-09 5.4E-14 107.9 10.4 109 91-213 122-238 (323)
90 PRK15469 ghrA bifunctional gly 99.0 2E-09 4.4E-14 108.0 9.4 105 93-212 120-226 (312)
91 TIGR01327 PGDH D-3-phosphoglyc 99.0 2.1E-09 4.5E-14 114.9 10.0 107 93-212 120-229 (525)
92 COG4007 Predicted dehydrogenas 99.0 3.7E-08 8E-13 96.1 17.2 225 111-363 1-262 (340)
93 TIGR03376 glycerol3P_DH glycer 99.0 5.7E-08 1.2E-12 98.9 19.5 244 113-387 1-290 (342)
94 PLN02928 oxidoreductase family 98.9 3E-09 6.5E-14 108.3 9.3 162 93-276 143-322 (347)
95 COG0240 GpsA Glycerol-3-phosph 98.9 5.9E-08 1.3E-12 97.9 18.4 173 111-315 1-190 (329)
96 PRK13581 D-3-phosphoglycerate 98.9 2.9E-09 6.3E-14 113.8 9.6 106 93-212 122-230 (526)
97 KOG2380 Prephenate dehydrogena 98.9 2.1E-08 4.5E-13 101.1 14.7 164 112-299 53-225 (480)
98 PRK12921 2-dehydropantoate 2-r 98.9 8.1E-08 1.8E-12 94.3 18.1 96 112-215 1-106 (305)
99 PF02737 3HCDH_N: 3-hydroxyacy 98.9 5.6E-08 1.2E-12 90.2 15.5 146 113-287 1-173 (180)
100 PRK08410 2-hydroxyacid dehydro 98.9 4.5E-09 9.7E-14 105.4 8.7 158 93-277 121-295 (311)
101 PRK08229 2-dehydropantoate 2-r 98.9 4.2E-08 9.1E-13 98.2 15.6 97 111-216 2-112 (341)
102 KOG0069 Glyoxylate/hydroxypyru 98.8 1.3E-08 2.8E-13 103.1 9.7 137 86-237 136-284 (336)
103 PRK06487 glycerate dehydrogena 98.8 1.4E-08 3E-13 102.1 8.9 103 93-214 124-236 (317)
104 PRK11790 D-3-phosphoglycerate 98.8 1.8E-08 4E-13 104.7 9.9 106 93-214 133-242 (409)
105 PRK06932 glycerate dehydrogena 98.8 2.2E-08 4.8E-13 100.6 8.9 159 93-277 123-298 (314)
106 PRK06444 prephenate dehydrogen 98.7 8.3E-07 1.8E-11 84.0 18.3 126 112-300 1-127 (197)
107 PRK11730 fadB multifunctional 98.7 7.1E-07 1.5E-11 98.9 20.0 155 109-287 311-487 (715)
108 TIGR02437 FadB fatty oxidation 98.7 3.1E-07 6.8E-12 101.7 17.1 148 110-287 312-487 (714)
109 TIGR02441 fa_ox_alpha_mit fatt 98.7 2.4E-07 5.3E-12 102.9 16.0 153 110-287 334-509 (737)
110 PRK15182 Vi polysaccharide bio 98.7 5.8E-07 1.3E-11 94.0 17.9 201 112-337 7-242 (425)
111 TIGR02853 spore_dpaA dipicolin 98.7 1.6E-07 3.5E-12 93.3 11.7 95 106-213 147-241 (287)
112 cd01065 NAD_bind_Shikimate_DH 98.7 3.5E-08 7.5E-13 87.4 5.8 99 108-214 17-118 (155)
113 TIGR02440 FadJ fatty oxidation 98.6 2.4E-06 5.2E-11 94.5 21.0 153 110-287 303-479 (699)
114 PRK06249 2-dehydropantoate 2-r 98.6 2.8E-06 6.1E-11 84.8 19.0 154 112-288 6-181 (313)
115 PRK11861 bifunctional prephena 98.6 3E-07 6.5E-12 101.1 13.2 135 182-324 1-136 (673)
116 PRK15438 erythronate-4-phospha 98.6 7.6E-08 1.7E-12 99.2 7.8 91 106-213 112-209 (378)
117 PLN02306 hydroxypyruvate reduc 98.6 1.4E-07 3.1E-12 97.4 9.8 113 94-213 145-274 (386)
118 PRK11154 fadJ multifunctional 98.6 1.8E-06 3.9E-11 95.6 18.7 153 110-287 308-484 (708)
119 PRK09287 6-phosphogluconate de 98.6 1.5E-06 3.3E-11 91.8 17.3 139 122-287 1-150 (459)
120 PRK00257 erythronate-4-phospha 98.6 8.8E-08 1.9E-12 98.9 7.4 91 106-213 112-209 (381)
121 COG1250 FadB 3-hydroxyacyl-CoA 98.6 3.5E-06 7.5E-11 84.8 18.6 152 111-287 3-177 (307)
122 KOG0068 D-3-phosphoglycerate d 98.5 3.3E-07 7.2E-12 92.4 8.5 160 88-271 123-292 (406)
123 PF00670 AdoHcyase_NAD: S-aden 98.5 5.3E-07 1.2E-11 82.9 8.9 95 106-215 19-113 (162)
124 TIGR01723 hmd_TIGR 5,10-methen 98.5 9.8E-06 2.1E-10 80.2 18.2 176 159-363 124-308 (340)
125 PRK00961 H(2)-dependent methyl 98.5 1.1E-05 2.4E-10 79.7 18.1 176 159-363 126-310 (342)
126 PRK15057 UDP-glucose 6-dehydro 98.5 5E-06 1.1E-10 86.0 16.0 93 112-215 1-120 (388)
127 PRK13304 L-aspartate dehydroge 98.4 1E-06 2.2E-11 86.4 10.2 92 111-213 1-94 (265)
128 PTZ00075 Adenosylhomocysteinas 98.4 9.1E-07 2E-11 93.5 10.2 120 106-243 250-371 (476)
129 COG1023 Gnd Predicted 6-phosph 98.4 3.9E-06 8.5E-11 81.6 13.4 145 112-285 1-153 (300)
130 PRK13302 putative L-aspartate 98.3 3.2E-06 6.9E-11 83.4 10.4 92 112-213 7-100 (271)
131 PRK14194 bifunctional 5,10-met 98.3 1.7E-06 3.8E-11 86.7 8.2 75 106-212 155-231 (301)
132 PRK08306 dipicolinate synthase 98.3 4.3E-06 9.3E-11 83.5 11.0 94 106-212 148-241 (296)
133 TIGR00936 ahcY adenosylhomocys 98.3 4.5E-06 9.8E-11 86.9 11.4 93 107-215 192-285 (406)
134 PRK05476 S-adenosyl-L-homocyst 98.2 6.2E-06 1.3E-10 86.4 11.0 93 107-215 209-302 (425)
135 COG0362 Gnd 6-phosphogluconate 98.2 1.2E-05 2.6E-10 82.9 12.7 145 112-287 4-163 (473)
136 PF03721 UDPG_MGDP_dh_N: UDP-g 98.2 3.4E-06 7.3E-11 78.8 7.9 95 112-214 1-122 (185)
137 PLN02353 probable UDP-glucose 98.2 5.1E-05 1.1E-09 80.6 16.7 204 111-336 1-249 (473)
138 PRK05708 2-dehydropantoate 2-r 98.2 6.2E-05 1.3E-09 75.2 16.3 152 112-287 3-170 (305)
139 PRK08269 3-hydroxybutyryl-CoA 98.2 0.00024 5.1E-09 71.7 20.3 205 122-360 1-242 (314)
140 PLN02494 adenosylhomocysteinas 98.2 1E-05 2.2E-10 85.6 10.6 93 107-214 251-343 (477)
141 cd05213 NAD_bind_Glutamyl_tRNA 98.2 1E-05 2.2E-10 81.2 10.0 96 108-212 176-273 (311)
142 COG1893 ApbA Ketopantoate redu 98.2 0.00011 2.4E-09 73.8 17.6 154 112-287 1-170 (307)
143 COG4074 Mth H2-forming N5,N10- 98.1 0.00017 3.7E-09 69.6 16.9 179 158-363 123-308 (343)
144 PF01408 GFO_IDH_MocA: Oxidore 98.1 1.5E-05 3.2E-10 67.5 8.8 80 113-200 2-84 (120)
145 cd00401 AdoHcyase S-adenosyl-L 98.1 2E-05 4.4E-10 82.3 11.5 93 106-214 198-291 (413)
146 PF02558 ApbA: Ketopantoate re 98.1 1.4E-05 2.9E-10 70.7 8.5 95 114-216 1-106 (151)
147 PRK06141 ornithine cyclodeamin 98.1 7.9E-06 1.7E-10 82.1 7.3 89 112-213 126-219 (314)
148 smart00859 Semialdhyde_dh Semi 98.0 2.2E-05 4.8E-10 67.5 8.0 97 113-214 1-101 (122)
149 PRK14188 bifunctional 5,10-met 98.0 1.5E-05 3.2E-10 79.9 7.8 75 107-212 155-230 (296)
150 TIGR02371 ala_DH_arch alanine 98.0 2E-05 4.3E-10 79.6 7.9 94 111-216 128-226 (325)
151 cd01075 NAD_bind_Leu_Phe_Val_D 98.0 2.6E-05 5.6E-10 73.6 7.9 72 105-188 23-95 (200)
152 PF01488 Shikimate_DH: Shikima 97.9 1.4E-05 3E-10 70.7 5.5 77 106-191 8-88 (135)
153 PRK14179 bifunctional 5,10-met 97.9 3.9E-05 8.4E-10 76.5 7.9 75 106-212 154-230 (284)
154 PRK00045 hemA glutamyl-tRNA re 97.9 3.2E-05 7E-10 80.7 7.4 74 108-190 180-254 (423)
155 PRK13303 L-aspartate dehydroge 97.8 0.00016 3.5E-09 71.1 10.4 91 111-213 1-94 (265)
156 COG5495 Uncharacterized conser 97.8 0.00044 9.5E-09 67.2 12.9 219 112-363 11-237 (289)
157 PRK07340 ornithine cyclodeamin 97.8 7.3E-05 1.6E-09 74.9 7.8 92 112-216 126-221 (304)
158 KOG2304 3-hydroxyacyl-CoA dehy 97.8 0.00014 3E-09 70.5 9.3 153 111-287 11-191 (298)
159 PRK00048 dihydrodipicolinate r 97.7 0.0002 4.3E-09 70.0 9.6 160 111-285 1-170 (257)
160 TIGR01035 hemA glutamyl-tRNA r 97.7 0.00017 3.7E-09 75.3 9.5 75 107-190 177-252 (417)
161 PLN00203 glutamyl-tRNA reducta 97.7 0.00017 3.6E-09 77.6 9.6 85 108-199 264-353 (519)
162 TIGR00036 dapB dihydrodipicoli 97.6 0.00042 9E-09 68.2 11.1 161 111-285 1-180 (266)
163 PRK06223 malate dehydrogenase; 97.6 0.00041 8.9E-09 69.0 10.9 69 111-186 2-78 (307)
164 PRK07589 ornithine cyclodeamin 97.6 0.00015 3.3E-09 74.2 7.2 97 111-216 129-229 (346)
165 PRK08618 ornithine cyclodeamin 97.6 0.00023 4.9E-09 71.9 8.3 93 112-216 128-225 (325)
166 PRK12549 shikimate 5-dehydroge 97.5 0.00021 4.6E-09 71.0 7.5 75 107-190 124-204 (284)
167 PRK06407 ornithine cyclodeamin 97.5 0.00019 4.1E-09 72.0 7.0 95 111-216 117-216 (301)
168 COG2423 Predicted ornithine cy 97.5 0.00036 7.7E-09 71.1 8.6 96 110-215 129-228 (330)
169 PRK13940 glutamyl-tRNA reducta 97.5 0.00019 4.1E-09 75.1 6.8 75 107-190 178-254 (414)
170 TIGR02992 ectoine_eutC ectoine 97.5 0.00029 6.2E-09 71.2 7.7 89 112-212 130-224 (326)
171 PF01113 DapB_N: Dihydrodipico 97.5 0.00032 7E-09 61.2 7.0 94 112-217 1-104 (124)
172 PRK06046 alanine dehydrogenase 97.5 0.00029 6.2E-09 71.2 7.4 93 112-216 130-227 (326)
173 COG1712 Predicted dinucleotide 97.5 0.00069 1.5E-08 65.6 9.5 92 112-214 1-94 (255)
174 cd01078 NAD_bind_H4MPT_DH NADP 97.5 0.00031 6.7E-09 65.2 7.0 97 106-211 24-128 (194)
175 TIGR01921 DAP-DH diaminopimela 97.4 0.00037 8.1E-09 70.8 8.0 75 112-196 4-78 (324)
176 PRK04207 glyceraldehyde-3-phos 97.4 0.00078 1.7E-08 68.7 10.0 96 111-214 1-111 (341)
177 COG0677 WecC UDP-N-acetyl-D-ma 97.4 0.00057 1.2E-08 70.8 8.8 109 112-232 10-157 (436)
178 TIGR00518 alaDH alanine dehydr 97.4 0.00045 9.7E-09 71.2 8.1 98 108-212 165-267 (370)
179 PF02423 OCD_Mu_crystall: Orni 97.4 0.00015 3.2E-09 73.1 4.4 96 111-215 128-227 (313)
180 COG0673 MviM Predicted dehydro 97.4 0.00056 1.2E-08 67.8 8.5 77 112-197 4-86 (342)
181 TIGR01763 MalateDH_bact malate 97.4 0.001 2.2E-08 66.8 10.4 69 112-187 2-78 (305)
182 PF01118 Semialdhyde_dh: Semia 97.4 0.00038 8.3E-09 60.2 6.3 92 113-214 1-99 (121)
183 TIGR00507 aroE shikimate 5-deh 97.4 0.00029 6.4E-09 69.0 6.3 93 108-211 115-213 (270)
184 COG0373 HemA Glutamyl-tRNA red 97.4 0.00033 7.1E-09 73.2 6.8 73 107-188 175-248 (414)
185 PRK06823 ornithine cyclodeamin 97.4 0.00044 9.6E-09 69.8 7.5 95 111-216 128-226 (315)
186 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00051 1.1E-08 63.5 7.2 76 106-212 40-116 (168)
187 PRK00258 aroE shikimate 5-dehy 97.3 0.00047 1E-08 68.0 6.2 77 107-191 120-198 (278)
188 TIGR03215 ac_ald_DH_ac acetald 97.3 0.0021 4.6E-08 64.2 10.6 90 112-212 2-95 (285)
189 cd05291 HicDH_like L-2-hydroxy 97.2 0.0018 3.8E-08 64.8 10.0 67 112-188 1-78 (306)
190 KOG2711 Glycerol-3-phosphate d 97.2 0.0019 4.1E-08 65.9 10.1 105 112-216 22-144 (372)
191 PRK08300 acetaldehyde dehydrog 97.2 0.0021 4.6E-08 64.7 10.3 91 112-213 5-102 (302)
192 COG0499 SAM1 S-adenosylhomocys 97.2 0.0008 1.7E-08 69.0 7.1 94 106-215 205-299 (420)
193 cd05311 NAD_bind_2_malic_enz N 97.2 0.0018 3.8E-08 62.4 9.1 92 106-210 21-126 (226)
194 PRK14175 bifunctional 5,10-met 97.2 0.001 2.2E-08 66.6 7.5 76 106-212 154-230 (286)
195 KOG2653 6-phosphogluconate deh 97.2 0.00054 1.2E-08 70.1 5.5 93 112-212 7-105 (487)
196 PRK00436 argC N-acetyl-gamma-g 97.2 0.002 4.3E-08 65.7 9.5 95 111-213 2-100 (343)
197 PRK14189 bifunctional 5,10-met 97.1 0.00094 2E-08 66.8 6.9 76 106-212 154-230 (285)
198 PF00056 Ldh_1_N: lactate/mala 97.1 0.0025 5.5E-08 56.9 8.9 67 112-186 1-77 (141)
199 TIGR00745 apbA_panE 2-dehydrop 97.1 0.012 2.6E-07 57.2 14.4 87 121-216 1-98 (293)
200 PTZ00117 malate dehydrogenase; 97.1 0.0028 6E-08 64.0 10.1 69 108-186 3-81 (319)
201 PRK08291 ectoine utilization p 97.1 0.0011 2.4E-08 67.0 7.1 88 112-210 133-225 (330)
202 PRK09310 aroDE bifunctional 3- 97.1 0.0013 2.8E-08 70.0 7.9 74 107-190 329-402 (477)
203 COG1748 LYS9 Saccharopine dehy 97.1 0.0016 3.4E-08 67.7 8.2 79 111-196 1-86 (389)
204 PF02254 TrkA_N: TrkA-N domain 97.1 0.0062 1.3E-07 51.3 10.4 94 114-214 1-99 (116)
205 COG0569 TrkA K+ transport syst 97.0 0.0038 8.3E-08 60.0 9.8 82 112-199 1-87 (225)
206 COG1004 Ugd Predicted UDP-gluc 97.0 0.0029 6.2E-08 65.8 9.2 91 112-210 1-118 (414)
207 cd05292 LDH_2 A subgroup of L- 97.0 0.0039 8.4E-08 62.6 9.8 70 112-188 1-77 (308)
208 cd05191 NAD_bind_amino_acid_DH 97.0 0.0034 7.3E-08 51.1 7.7 66 106-211 19-85 (86)
209 PRK09496 trkA potassium transp 97.0 0.0042 9.1E-08 64.4 10.4 78 112-196 1-83 (453)
210 PRK06718 precorrin-2 dehydroge 97.0 0.0039 8.4E-08 59.1 9.0 85 106-199 6-91 (202)
211 PF13380 CoA_binding_2: CoA bi 97.0 0.003 6.4E-08 54.7 7.5 86 112-214 1-90 (116)
212 PRK13301 putative L-aspartate 97.0 0.0051 1.1E-07 61.0 9.9 91 112-214 3-96 (267)
213 TIGR02717 AcCoA-syn-alpha acet 96.9 0.0026 5.6E-08 67.1 8.4 87 112-215 8-100 (447)
214 KOG1370 S-adenosylhomocysteine 96.9 0.0048 1E-07 62.3 9.6 126 72-215 179-304 (434)
215 PTZ00082 L-lactate dehydrogena 96.9 0.0054 1.2E-07 62.1 10.2 66 112-186 7-82 (321)
216 PRK06199 ornithine cyclodeamin 96.9 0.002 4.4E-08 66.7 7.1 90 110-209 154-256 (379)
217 TIGR01809 Shik-DH-AROM shikima 96.9 0.0021 4.5E-08 63.8 6.9 77 107-190 122-202 (282)
218 PF02629 CoA_binding: CoA bind 96.9 0.0014 3E-08 54.6 4.8 90 112-213 4-96 (96)
219 PRK14192 bifunctional 5,10-met 96.9 0.0029 6.4E-08 63.1 7.5 76 106-212 155-231 (283)
220 PRK11579 putative oxidoreducta 96.8 0.0074 1.6E-07 61.0 10.3 76 112-198 5-84 (346)
221 PRK10206 putative oxidoreducta 96.8 0.0062 1.3E-07 61.9 9.4 82 111-199 1-85 (344)
222 TIGR01850 argC N-acetyl-gamma- 96.7 0.0077 1.7E-07 61.5 9.5 95 112-214 1-101 (346)
223 cd01339 LDH-like_MDH L-lactate 96.7 0.006 1.3E-07 60.7 8.5 64 114-186 1-74 (300)
224 PRK10792 bifunctional 5,10-met 96.7 0.0063 1.4E-07 60.9 8.5 76 106-212 155-231 (285)
225 COG0686 Ald Alanine dehydrogen 96.7 0.0067 1.4E-07 61.5 8.5 143 95-246 153-308 (371)
226 KOG2305 3-hydroxyacyl-CoA dehy 96.7 0.12 2.6E-06 50.6 16.5 214 112-351 4-250 (313)
227 PRK00066 ldh L-lactate dehydro 96.6 0.013 2.8E-07 59.2 10.3 65 112-186 7-81 (315)
228 PLN02819 lysine-ketoglutarate 96.6 0.0045 9.7E-08 71.5 7.7 88 109-197 567-667 (1042)
229 TIGR00561 pntA NAD(P) transhyd 96.5 0.011 2.4E-07 63.6 9.6 94 112-212 165-284 (511)
230 PRK06719 precorrin-2 dehydroge 96.5 0.009 2E-07 54.5 7.4 88 101-200 5-92 (157)
231 PF13460 NAD_binding_10: NADH( 96.5 0.02 4.3E-07 51.5 9.6 66 114-188 1-70 (183)
232 PRK14982 acyl-ACP reductase; P 96.5 0.0062 1.3E-07 62.4 6.9 94 106-212 151-246 (340)
233 cd05293 LDH_1 A subgroup of L- 96.5 0.024 5.1E-07 57.3 11.1 68 112-186 4-79 (312)
234 PRK10669 putative cation:proto 96.4 0.017 3.8E-07 62.3 10.4 73 113-192 419-495 (558)
235 cd05212 NAD_bind_m-THF_DH_Cycl 96.4 0.012 2.5E-07 53.0 7.3 74 106-210 24-98 (140)
236 COG0169 AroE Shikimate 5-dehyd 96.4 0.0077 1.7E-07 60.2 6.8 94 107-209 123-223 (283)
237 PRK09496 trkA potassium transp 96.4 0.032 7E-07 57.9 11.6 93 112-211 232-330 (453)
238 PF13241 NAD_binding_7: Putati 96.4 0.02 4.3E-07 48.3 8.2 74 107-195 4-77 (103)
239 cd00650 LDH_MDH_like NAD-depen 96.3 0.019 4.2E-07 56.0 9.2 65 114-186 1-78 (263)
240 TIGR02354 thiF_fam2 thiamine b 96.3 0.03 6.5E-07 53.0 10.2 102 105-214 16-146 (200)
241 cd01079 NAD_bind_m-THF_DH NAD 96.3 0.01 2.2E-07 56.4 6.9 93 106-213 58-157 (197)
242 cd05297 GH4_alpha_glucosidase_ 96.3 0.0065 1.4E-07 63.7 6.2 80 112-193 1-89 (423)
243 PRK03659 glutathione-regulated 96.3 0.021 4.5E-07 62.6 10.0 82 112-200 401-487 (601)
244 PF02882 THF_DHG_CYH_C: Tetrah 96.3 0.019 4.2E-07 52.8 8.3 76 106-212 32-108 (160)
245 PRK04148 hypothetical protein; 96.3 0.045 9.8E-07 49.1 10.4 92 109-209 16-108 (134)
246 PTZ00187 succinyl-CoA syntheta 96.3 0.019 4.2E-07 58.3 9.1 118 112-244 30-153 (317)
247 PRK09424 pntA NAD(P) transhydr 96.3 0.022 4.9E-07 61.3 10.0 96 109-212 164-285 (509)
248 PTZ00325 malate dehydrogenase; 96.2 0.023 5E-07 57.8 9.1 76 105-187 3-85 (321)
249 PRK05678 succinyl-CoA syntheta 96.2 0.022 4.9E-07 57.1 8.8 92 112-217 9-103 (291)
250 COG2344 AT-rich DNA-binding pr 96.2 0.018 3.8E-07 54.6 7.4 105 111-235 84-193 (211)
251 PRK05472 redox-sensing transcr 96.1 0.0069 1.5E-07 57.5 4.8 81 112-199 85-167 (213)
252 PF05368 NmrA: NmrA-like famil 96.1 0.035 7.6E-07 52.2 9.3 69 114-188 1-74 (233)
253 PF03435 Saccharop_dh: Sacchar 96.1 0.02 4.3E-07 58.6 8.1 78 114-197 1-86 (386)
254 PRK14191 bifunctional 5,10-met 96.1 0.016 3.4E-07 58.1 6.9 76 106-212 153-229 (285)
255 TIGR01470 cysG_Nterm siroheme 96.0 0.05 1.1E-06 51.7 9.9 84 106-198 5-90 (205)
256 PRK14178 bifunctional 5,10-met 96.0 0.021 4.6E-07 57.0 7.7 76 106-212 148-224 (279)
257 TIGR02356 adenyl_thiF thiazole 96.0 0.041 9E-07 51.9 9.2 88 105-199 16-132 (202)
258 TIGR01019 sucCoAalpha succinyl 96.0 0.027 5.9E-07 56.4 8.3 117 112-243 7-126 (286)
259 PRK05442 malate dehydrogenase; 95.9 0.059 1.3E-06 54.9 10.7 67 110-186 3-88 (326)
260 TIGR01546 GAPDH-II_archae glyc 95.9 0.037 8E-07 56.6 9.1 77 114-195 1-92 (333)
261 cd05290 LDH_3 A subgroup of L- 95.9 0.049 1.1E-06 55.0 9.7 69 113-187 1-77 (307)
262 PLN00112 malate dehydrogenase 95.9 0.085 1.9E-06 56.0 11.9 70 112-186 101-184 (444)
263 PRK03562 glutathione-regulated 95.8 0.045 9.7E-07 60.2 10.1 75 112-193 401-479 (621)
264 cd05211 NAD_bind_Glu_Leu_Phe_V 95.8 0.03 6.4E-07 53.8 7.5 79 106-191 19-110 (217)
265 PRK00683 murD UDP-N-acetylmura 95.8 0.029 6.3E-07 58.3 8.0 67 112-189 4-70 (418)
266 PRK14176 bifunctional 5,10-met 95.7 0.042 9.1E-07 55.2 8.5 76 106-212 160-236 (287)
267 PRK12548 shikimate 5-dehydroge 95.7 0.028 6E-07 56.0 7.1 78 107-191 123-212 (289)
268 PLN02602 lactate dehydrogenase 95.7 0.085 1.8E-06 54.3 10.7 65 112-185 38-112 (350)
269 cd01076 NAD_bind_1_Glu_DH NAD( 95.7 0.035 7.6E-07 53.7 7.4 35 106-147 27-62 (227)
270 cd01338 MDH_choloroplast_like 95.6 0.037 8E-07 56.2 7.8 65 112-186 3-86 (322)
271 PRK14183 bifunctional 5,10-met 95.6 0.035 7.5E-07 55.6 7.4 76 106-212 153-229 (281)
272 TIGR01761 thiaz-red thiazoliny 95.6 0.052 1.1E-06 55.7 8.8 86 112-209 4-94 (343)
273 PF01262 AlaDh_PNT_C: Alanine 95.6 0.015 3.3E-07 53.0 4.5 100 105-212 15-139 (168)
274 PRK14173 bifunctional 5,10-met 95.6 0.04 8.6E-07 55.3 7.5 76 106-212 151-227 (287)
275 PRK12749 quinate/shikimate deh 95.5 0.041 8.9E-07 55.0 7.5 78 107-191 121-209 (288)
276 PRK14186 bifunctional 5,10-met 95.5 0.043 9.3E-07 55.3 7.6 76 106-212 154-230 (297)
277 PRK12475 thiamine/molybdopteri 95.5 0.085 1.8E-06 53.9 9.9 88 105-199 19-137 (338)
278 PF00185 OTCace: Aspartate/orn 95.5 0.16 3.4E-06 46.3 10.6 69 109-188 1-83 (158)
279 PRK14172 bifunctional 5,10-met 95.4 0.061 1.3E-06 53.8 8.3 75 106-211 154-229 (278)
280 TIGR01759 MalateDH-SF1 malate 95.4 0.13 2.8E-06 52.4 10.8 69 112-186 4-87 (323)
281 PLN02516 methylenetetrahydrofo 95.4 0.046 9.9E-07 55.2 7.4 76 106-212 163-239 (299)
282 PRK14170 bifunctional 5,10-met 95.4 0.047 1E-06 54.7 7.5 76 106-212 153-229 (284)
283 PF03720 UDPG_MGDP_dh_C: UDP-g 95.4 0.074 1.6E-06 45.1 7.7 84 121-214 17-103 (106)
284 PRK14177 bifunctional 5,10-met 95.4 0.051 1.1E-06 54.5 7.6 76 106-212 155-231 (284)
285 PRK14169 bifunctional 5,10-met 95.4 0.063 1.4E-06 53.8 8.3 76 106-212 152-228 (282)
286 cd00300 LDH_like L-lactate deh 95.4 0.067 1.5E-06 53.5 8.5 68 114-187 1-75 (300)
287 PRK00421 murC UDP-N-acetylmura 95.3 0.053 1.1E-06 57.0 8.0 70 106-185 3-73 (461)
288 cd05294 LDH-like_MDH_nadp A la 95.3 0.095 2.1E-06 52.8 9.3 67 112-187 1-81 (309)
289 COG0190 FolD 5,10-methylene-te 95.3 0.055 1.2E-06 54.1 7.3 76 106-212 152-228 (283)
290 PRK14171 bifunctional 5,10-met 95.2 0.074 1.6E-06 53.4 8.2 75 107-212 156-231 (288)
291 PRK00676 hemA glutamyl-tRNA re 95.2 0.056 1.2E-06 55.4 7.5 63 107-186 171-234 (338)
292 PRK14180 bifunctional 5,10-met 95.2 0.08 1.7E-06 53.0 8.3 76 106-212 154-230 (282)
293 PRK14166 bifunctional 5,10-met 95.2 0.08 1.7E-06 53.0 8.2 76 106-212 153-229 (282)
294 PRK14190 bifunctional 5,10-met 95.2 0.063 1.4E-06 53.8 7.4 76 106-212 154-230 (284)
295 TIGR00670 asp_carb_tr aspartat 95.1 0.15 3.3E-06 51.4 10.0 70 107-185 147-223 (301)
296 PRK14187 bifunctional 5,10-met 95.1 0.088 1.9E-06 53.1 8.2 76 106-212 156-232 (294)
297 cd00704 MDH Malate dehydrogena 95.1 0.066 1.4E-06 54.4 7.5 63 113-185 2-83 (323)
298 PRK00141 murD UDP-N-acetylmura 95.0 0.064 1.4E-06 56.9 7.6 74 106-189 11-87 (473)
299 KOG2741 Dimeric dihydrodiol de 95.0 0.13 2.7E-06 52.9 9.1 86 112-201 7-95 (351)
300 PRK14027 quinate/shikimate deh 94.9 0.055 1.2E-06 54.0 6.4 77 107-190 124-206 (283)
301 PLN02616 tetrahydrofolate dehy 94.9 0.088 1.9E-06 54.4 7.9 76 106-212 227-303 (364)
302 cd01336 MDH_cytoplasmic_cytoso 94.9 0.092 2E-06 53.3 8.0 75 112-186 3-86 (325)
303 PRK06270 homoserine dehydrogen 94.9 0.092 2E-06 53.6 8.1 99 112-210 3-123 (341)
304 PRK14182 bifunctional 5,10-met 94.9 0.11 2.4E-06 52.1 8.3 76 106-212 153-229 (282)
305 PLN02897 tetrahydrofolate dehy 94.9 0.095 2.1E-06 53.9 8.0 76 106-212 210-286 (345)
306 PRK01710 murD UDP-N-acetylmura 94.9 0.074 1.6E-06 56.0 7.5 71 106-185 10-84 (458)
307 PRK14106 murD UDP-N-acetylmura 94.8 0.12 2.7E-06 53.8 9.0 71 108-187 3-77 (450)
308 PRK14193 bifunctional 5,10-met 94.8 0.11 2.4E-06 52.1 8.1 76 106-212 154-232 (284)
309 TIGR01758 MDH_euk_cyt malate d 94.8 0.085 1.8E-06 53.6 7.3 68 113-186 1-83 (324)
310 PRK01438 murD UDP-N-acetylmura 94.8 0.12 2.5E-06 54.6 8.6 69 108-186 14-86 (480)
311 PRK08644 thiamine biosynthesis 94.7 0.21 4.5E-06 47.7 9.4 37 105-148 23-60 (212)
312 COG1064 AdhP Zn-dependent alco 94.6 0.15 3.3E-06 52.3 8.7 90 108-209 165-256 (339)
313 PRK14174 bifunctional 5,10-met 94.6 0.094 2E-06 52.9 7.1 80 106-212 155-235 (295)
314 PF10728 DUF2520: Domain of un 94.6 0.24 5.3E-06 44.1 9.0 93 263-366 4-98 (132)
315 PRK15076 alpha-galactosidase; 94.6 0.08 1.7E-06 55.9 6.8 73 111-188 1-85 (431)
316 cd01337 MDH_glyoxysomal_mitoch 94.5 0.24 5.3E-06 50.2 9.9 68 112-186 1-76 (310)
317 COG0039 Mdh Malate/lactate deh 94.5 0.3 6.6E-06 49.6 10.5 71 112-186 1-77 (313)
318 cd08230 glucose_DH Glucose deh 94.5 0.41 8.9E-06 48.0 11.4 93 109-211 172-268 (355)
319 cd01492 Aos1_SUMO Ubiquitin ac 94.4 0.19 4.2E-06 47.4 8.4 36 105-147 16-52 (197)
320 PRK01390 murD UDP-N-acetylmura 94.4 0.11 2.4E-06 54.6 7.3 67 107-185 6-72 (460)
321 PRK14185 bifunctional 5,10-met 94.3 0.13 2.8E-06 51.8 7.4 76 106-212 153-233 (293)
322 PRK05086 malate dehydrogenase; 94.3 0.3 6.6E-06 49.3 10.2 71 112-187 1-78 (312)
323 PRK14184 bifunctional 5,10-met 94.2 0.089 1.9E-06 52.8 6.0 76 106-212 153-233 (286)
324 PLN02353 probable UDP-glucose 94.2 0.28 6.1E-06 52.5 10.1 96 107-214 321-449 (473)
325 cd01487 E1_ThiF_like E1_ThiF_l 94.2 0.31 6.8E-06 45.0 9.2 31 113-149 1-32 (174)
326 TIGR01772 MDH_euk_gproteo mala 94.2 0.25 5.4E-06 50.1 9.1 68 113-187 1-76 (312)
327 COG1063 Tdh Threonine dehydrog 94.2 0.28 6.2E-06 50.0 9.6 90 112-211 170-268 (350)
328 PLN02520 bifunctional 3-dehydr 94.2 0.12 2.6E-06 55.9 7.2 75 108-191 377-452 (529)
329 PLN02968 Probable N-acetyl-gam 94.1 0.15 3.1E-06 53.2 7.4 94 112-214 39-136 (381)
330 TIGR01757 Malate-DH_plant mala 94.1 0.3 6.5E-06 51.0 9.7 22 112-133 45-67 (387)
331 cd01485 E1-1_like Ubiquitin ac 94.1 0.26 5.7E-06 46.4 8.5 36 105-147 14-50 (198)
332 COG1648 CysG Siroheme synthase 94.0 0.35 7.5E-06 46.4 9.4 83 106-197 8-92 (210)
333 COG0289 DapB Dihydrodipicolina 94.0 0.29 6.4E-06 48.6 9.0 161 111-285 2-179 (266)
334 PRK12550 shikimate 5-dehydroge 94.0 0.16 3.5E-06 50.4 7.3 68 112-191 123-191 (272)
335 PF10100 DUF2338: Uncharacteri 94.0 1.6 3.4E-05 46.0 14.6 161 111-287 1-195 (429)
336 PRK07688 thiamine/molybdopteri 93.9 0.35 7.6E-06 49.5 9.7 88 105-199 19-137 (339)
337 PF04016 DUF364: Domain of unk 93.9 0.037 8E-07 50.0 2.3 86 106-209 7-92 (147)
338 PRK03369 murD UDP-N-acetylmura 93.9 0.23 4.9E-06 53.0 8.6 70 107-186 9-78 (488)
339 PRK05671 aspartate-semialdehyd 93.9 0.18 3.9E-06 51.6 7.5 87 111-214 4-99 (336)
340 cd00757 ThiF_MoeB_HesA_family 93.9 0.33 7.1E-06 46.5 8.9 87 105-198 16-131 (228)
341 PF03059 NAS: Nicotianamine sy 93.8 0.38 8.3E-06 48.1 9.4 99 112-215 122-235 (276)
342 TIGR01771 L-LDH-NAD L-lactate 93.8 0.33 7.2E-06 48.7 9.1 62 116-187 1-73 (299)
343 PRK06349 homoserine dehydrogen 93.7 0.14 3.1E-06 53.8 6.6 90 112-209 4-101 (426)
344 PLN00125 Succinyl-CoA ligase [ 93.7 0.32 7E-06 49.2 8.7 118 112-243 13-133 (300)
345 PRK08306 dipicolinate synthase 93.6 0.3 6.5E-06 48.9 8.4 85 110-209 2-98 (296)
346 PRK05562 precorrin-2 dehydroge 93.6 0.64 1.4E-05 45.1 10.3 90 100-199 16-106 (223)
347 PRK02472 murD UDP-N-acetylmura 93.5 0.23 5E-06 51.7 7.8 70 108-186 3-76 (447)
348 COG0771 MurD UDP-N-acetylmuram 93.5 0.19 4E-06 53.5 7.1 70 107-185 4-76 (448)
349 TIGR01318 gltD_gamma_fam gluta 93.5 0.33 7.2E-06 51.4 9.0 74 108-188 139-236 (467)
350 PRK08762 molybdopterin biosynt 93.5 0.46 9.9E-06 49.0 9.8 88 105-199 130-246 (376)
351 PRK14181 bifunctional 5,10-met 93.4 0.32 6.9E-06 48.9 8.2 80 106-212 149-229 (287)
352 PRK12809 putative oxidoreducta 93.4 0.33 7.2E-06 53.5 9.0 74 108-188 308-405 (639)
353 cd01483 E1_enzyme_family Super 93.4 0.61 1.3E-05 41.0 9.1 29 113-147 1-30 (143)
354 TIGR01851 argC_other N-acetyl- 93.3 0.45 9.7E-06 48.4 9.1 157 112-321 2-159 (310)
355 PRK11863 N-acetyl-gamma-glutam 93.3 0.41 9E-06 48.6 8.9 154 112-319 3-158 (313)
356 TIGR03366 HpnZ_proposed putati 93.3 0.63 1.4E-05 45.2 9.9 88 109-211 120-217 (280)
357 PLN03075 nicotianamine synthas 93.2 0.83 1.8E-05 46.2 10.8 100 109-214 123-237 (296)
358 PRK02318 mannitol-1-phosphate 93.1 0.21 4.6E-06 51.6 6.7 84 112-202 1-104 (381)
359 COG0078 ArgF Ornithine carbamo 93.1 0.33 7.2E-06 49.1 7.8 85 108-203 151-248 (310)
360 PRK02006 murD UDP-N-acetylmura 93.1 0.25 5.5E-06 52.6 7.4 71 108-188 5-81 (498)
361 COG2910 Putative NADH-flavin r 93.1 0.52 1.1E-05 44.9 8.6 94 112-214 1-106 (211)
362 PLN00106 malate dehydrogenase 93.1 0.22 4.7E-06 50.8 6.6 70 112-187 19-95 (323)
363 PRK12771 putative glutamate sy 93.1 0.26 5.7E-06 53.3 7.6 75 107-188 134-232 (564)
364 TIGR00978 asd_EA aspartate-sem 93.1 0.32 6.9E-06 49.6 7.8 94 112-214 1-106 (341)
365 PRK05690 molybdopterin biosynt 93.0 0.42 9.2E-06 46.6 8.2 36 105-147 27-63 (245)
366 TIGR01202 bchC 2-desacetyl-2-h 93.0 0.66 1.4E-05 45.9 9.7 87 109-211 144-230 (308)
367 PRK05597 molybdopterin biosynt 92.9 0.72 1.6E-05 47.4 10.1 87 105-198 23-138 (355)
368 PRK08328 hypothetical protein; 92.8 0.62 1.3E-05 45.0 9.0 36 105-147 22-58 (231)
369 PRK14874 aspartate-semialdehyd 92.8 0.34 7.3E-06 49.3 7.5 91 111-214 1-96 (334)
370 TIGR01745 asd_gamma aspartate- 92.8 0.72 1.5E-05 48.0 9.9 168 112-324 1-178 (366)
371 PRK09880 L-idonate 5-dehydroge 92.8 1.2 2.5E-05 44.6 11.3 92 109-211 169-265 (343)
372 PLN02383 aspartate semialdehyd 92.8 0.34 7.4E-06 49.7 7.5 88 112-214 8-102 (344)
373 PRK14168 bifunctional 5,10-met 92.8 0.4 8.7E-06 48.5 7.8 80 106-212 157-237 (297)
374 PRK10537 voltage-gated potassi 92.7 0.61 1.3E-05 48.8 9.5 91 112-211 241-336 (393)
375 COG0002 ArgC Acetylglutamate s 92.7 0.7 1.5E-05 47.6 9.6 95 111-213 2-102 (349)
376 PLN02527 aspartate carbamoyltr 92.7 0.73 1.6E-05 46.6 9.7 71 107-185 148-225 (306)
377 TIGR02822 adh_fam_2 zinc-bindi 92.7 0.85 1.8E-05 45.6 10.1 88 109-211 165-253 (329)
378 PRK14804 ornithine carbamoyltr 92.7 0.44 9.5E-06 48.3 8.1 69 107-186 150-226 (311)
379 PRK00779 ornithine carbamoyltr 92.7 0.65 1.4E-05 46.9 9.3 70 107-185 149-224 (304)
380 PRK04284 ornithine carbamoyltr 92.6 0.37 8.1E-06 49.3 7.4 70 107-185 152-231 (332)
381 PRK11891 aspartate carbamoyltr 92.4 0.84 1.8E-05 48.4 10.0 71 108-186 239-316 (429)
382 PRK12562 ornithine carbamoyltr 92.4 0.5 1.1E-05 48.4 8.1 71 107-186 153-233 (334)
383 TIGR03026 NDP-sugDHase nucleot 92.4 0.63 1.4E-05 48.4 9.0 88 107-210 310-408 (411)
384 PRK08664 aspartate-semialdehyd 92.3 0.48 1.1E-05 48.4 7.9 93 112-213 4-108 (349)
385 PRK08223 hypothetical protein; 92.3 1.1 2.5E-05 45.0 10.3 28 105-133 22-49 (287)
386 PRK02255 putrescine carbamoylt 92.3 0.87 1.9E-05 46.8 9.7 70 107-185 151-229 (338)
387 PRK06598 aspartate-semialdehyd 92.2 1.6 3.5E-05 45.4 11.6 169 111-324 1-179 (369)
388 KOG0022 Alcohol dehydrogenase, 92.2 0.28 6E-06 50.1 5.8 58 106-174 189-246 (375)
389 PRK05600 thiamine biosynthesis 92.2 1 2.2E-05 46.7 10.2 88 105-199 36-152 (370)
390 PLN02586 probable cinnamyl alc 92.1 1.1 2.4E-05 45.4 10.3 91 109-209 183-275 (360)
391 PF03447 NAD_binding_3: Homose 92.1 1.1 2.5E-05 37.9 8.9 82 118-209 1-87 (117)
392 CHL00194 ycf39 Ycf39; Provisio 92.1 0.66 1.4E-05 46.0 8.4 69 112-187 1-73 (317)
393 PRK01713 ornithine carbamoyltr 92.0 0.57 1.2E-05 47.9 8.0 71 107-186 153-233 (334)
394 PRK08040 putative semialdehyde 92.0 0.27 5.9E-06 50.4 5.7 88 112-214 5-99 (336)
395 TIGR00658 orni_carb_tr ornithi 92.0 0.99 2.2E-05 45.6 9.6 69 108-185 146-223 (304)
396 PRK04690 murD UDP-N-acetylmura 91.8 0.5 1.1E-05 50.2 7.5 71 108-188 6-81 (468)
397 TIGR02355 moeB molybdopterin s 91.8 0.65 1.4E-05 45.2 7.8 87 105-198 19-134 (240)
398 PRK14573 bifunctional D-alanyl 91.7 0.48 1.1E-05 53.6 7.8 66 111-185 4-70 (809)
399 PRK12769 putative oxidoreducta 91.5 0.65 1.4E-05 51.3 8.3 72 109-187 326-421 (654)
400 PRK04308 murD UDP-N-acetylmura 91.4 0.63 1.4E-05 48.6 7.8 72 108-188 3-79 (445)
401 PRK06728 aspartate-semialdehyd 91.4 0.53 1.1E-05 48.6 6.9 89 112-214 6-101 (347)
402 PRK00856 pyrB aspartate carbam 91.3 0.85 1.8E-05 46.2 8.3 65 107-185 153-220 (305)
403 PRK14167 bifunctional 5,10-met 91.3 0.78 1.7E-05 46.4 7.9 80 106-212 153-233 (297)
404 PRK02102 ornithine carbamoyltr 91.3 0.63 1.4E-05 47.7 7.4 71 107-186 152-232 (331)
405 PLN00141 Tic62-NAD(P)-related 91.2 0.82 1.8E-05 43.6 7.8 76 106-188 13-95 (251)
406 TIGR03693 ocin_ThiF_like putat 91.1 1 2.3E-05 49.6 9.2 78 109-193 128-219 (637)
407 TIGR01087 murD UDP-N-acetylmur 91.0 0.51 1.1E-05 49.0 6.6 64 113-185 1-69 (433)
408 KOG3007 Mu-crystallin [Amino a 90.9 0.5 1.1E-05 47.4 6.0 99 113-219 140-244 (333)
409 PRK03515 ornithine carbamoyltr 90.9 0.86 1.9E-05 46.8 8.0 70 107-185 153-232 (336)
410 PLN02342 ornithine carbamoyltr 90.9 0.91 2E-05 46.8 8.1 69 107-186 191-267 (348)
411 COG0136 Asd Aspartate-semialde 90.8 1.1 2.5E-05 45.9 8.7 92 112-214 2-99 (334)
412 COG2227 UbiG 2-polyprenyl-3-me 90.6 1.9 4.2E-05 42.4 9.7 91 108-211 58-160 (243)
413 PRK06019 phosphoribosylaminoim 90.6 0.43 9.3E-06 49.0 5.5 64 111-184 2-69 (372)
414 PRK07200 aspartate/ornithine c 90.5 1.1 2.3E-05 47.2 8.3 71 107-186 184-270 (395)
415 TIGR01532 E4PD_g-proteo D-eryt 90.5 0.84 1.8E-05 46.6 7.4 95 113-212 1-120 (325)
416 PRK12814 putative NADPH-depend 90.5 1.1 2.3E-05 49.8 8.8 74 107-187 190-287 (652)
417 KOG1495 Lactate dehydrogenase 90.2 1.4 3E-05 44.4 8.3 124 106-237 16-163 (332)
418 PLN02477 glutamate dehydrogena 90.0 0.64 1.4E-05 49.0 6.3 35 106-147 202-237 (410)
419 PRK06057 short chain dehydroge 90.0 1.7 3.7E-05 41.1 8.7 36 107-149 4-40 (255)
420 PF00899 ThiF: ThiF family; I 89.9 0.5 1.1E-05 41.3 4.6 31 112-148 3-34 (135)
421 TIGR01082 murC UDP-N-acetylmur 89.9 0.89 1.9E-05 47.7 7.3 64 113-185 1-65 (448)
422 PRK13814 pyrB aspartate carbam 89.9 1 2.2E-05 45.7 7.4 64 108-184 155-223 (310)
423 cd08237 ribitol-5-phosphate_DH 89.9 2.5 5.4E-05 42.4 10.3 88 109-210 163-254 (341)
424 TIGR01296 asd_B aspartate-semi 89.8 0.62 1.3E-05 47.6 5.9 87 113-214 1-94 (339)
425 COG1004 Ugd Predicted UDP-gluc 89.8 0.89 1.9E-05 47.7 7.0 73 108-194 308-392 (414)
426 COG0026 PurK Phosphoribosylami 89.8 0.45 9.8E-06 49.3 4.8 66 111-184 1-68 (375)
427 PRK06153 hypothetical protein; 89.7 3.3 7.1E-05 43.5 11.1 87 105-198 171-286 (393)
428 PRK07806 short chain dehydroge 89.7 5.6 0.00012 37.2 11.9 36 108-150 4-40 (248)
429 PRK06463 fabG 3-ketoacyl-(acyl 89.7 2.1 4.5E-05 40.6 9.0 83 108-214 5-89 (255)
430 PLN02178 cinnamyl-alcohol dehy 89.6 3.1 6.6E-05 42.7 10.8 91 109-209 178-270 (375)
431 PRK08265 short chain dehydroge 89.5 1.9 4.1E-05 41.2 8.7 38 107-151 3-41 (261)
432 PRK12409 D-amino acid dehydrog 89.5 0.47 1E-05 48.5 4.8 34 111-150 1-34 (410)
433 TIGR01317 GOGAT_sm_gam glutama 89.4 1.5 3.3E-05 46.7 8.7 74 107-187 140-237 (485)
434 PRK07825 short chain dehydroge 89.4 1.8 3.9E-05 41.4 8.5 85 108-214 3-88 (273)
435 PRK05786 fabG 3-ketoacyl-(acyl 89.4 4.6 0.0001 37.4 11.0 38 108-152 3-41 (238)
436 PRK07831 short chain dehydroge 89.3 1.6 3.4E-05 41.6 7.9 43 101-150 8-52 (262)
437 PRK06392 homoserine dehydrogen 89.3 1 2.2E-05 46.0 6.9 100 112-211 1-115 (326)
438 PRK03806 murD UDP-N-acetylmura 89.3 1.2 2.5E-05 46.5 7.5 68 108-185 4-72 (438)
439 cd01491 Ube1_repeat1 Ubiquitin 89.2 1.4 3.1E-05 44.2 7.8 37 105-148 14-51 (286)
440 PRK09242 tropinone reductase; 89.2 1.4 3E-05 41.7 7.5 88 108-214 7-98 (257)
441 PRK12810 gltD glutamate syntha 89.2 1.5 3.2E-05 46.5 8.3 75 106-187 139-237 (471)
442 PRK10637 cysG siroheme synthas 89.2 2.4 5.3E-05 45.0 9.9 79 106-193 8-87 (457)
443 PRK03803 murD UDP-N-acetylmura 89.1 1 2.2E-05 47.2 7.0 66 112-185 7-75 (448)
444 PRK08192 aspartate carbamoyltr 89.1 1.5 3.3E-05 45.0 8.1 71 107-185 156-233 (338)
445 PRK07878 molybdopterin biosynt 89.1 1.5 3.3E-05 45.6 8.2 28 105-133 37-64 (392)
446 cd05188 MDR Medium chain reduc 89.1 5.3 0.00012 37.1 11.2 94 108-212 133-232 (271)
447 PRK05717 oxidoreductase; Valid 89.1 2 4.3E-05 40.7 8.4 37 106-149 6-43 (255)
448 TIGR02819 fdhA_non_GSH formald 89.1 4 8.7E-05 42.2 11.3 96 109-211 185-298 (393)
449 PRK08374 homoserine dehydrogen 89.0 2.9 6.2E-05 42.8 10.0 95 112-209 3-119 (336)
450 PRK13984 putative oxidoreducta 89.0 1.5 3.2E-05 47.9 8.3 72 109-187 282-377 (604)
451 TIGR03316 ygeW probable carbam 88.8 1.6 3.5E-05 45.2 8.0 71 107-186 167-253 (357)
452 cd01486 Apg7 Apg7 is an E1-lik 88.6 1.1 2.4E-05 45.5 6.5 21 113-133 1-21 (307)
453 PRK14031 glutamate dehydrogena 88.6 2.8 6E-05 44.8 9.8 33 106-145 224-256 (444)
454 PRK07411 hypothetical protein; 88.5 1.4 3E-05 46.0 7.4 88 105-199 33-149 (390)
455 PRK06182 short chain dehydroge 88.5 3.6 7.7E-05 39.4 9.9 71 109-187 2-83 (273)
456 PRK02705 murD UDP-N-acetylmura 88.4 1.6 3.5E-05 45.6 8.0 67 113-185 2-75 (459)
457 PLN02514 cinnamyl-alcohol dehy 88.4 4 8.6E-05 41.2 10.5 93 109-211 180-274 (357)
458 PRK09414 glutamate dehydrogena 88.3 1.9 4.2E-05 45.9 8.4 34 106-146 228-261 (445)
459 PRK00517 prmA ribosomal protei 88.3 2.2 4.8E-05 41.3 8.2 90 109-211 119-212 (250)
460 PRK15182 Vi polysaccharide bio 88.2 2.9 6.3E-05 44.1 9.7 94 107-214 311-415 (425)
461 COG0334 GdhA Glutamate dehydro 88.2 1.4 2.9E-05 46.5 7.0 38 107-151 204-241 (411)
462 PRK13394 3-hydroxybutyrate deh 88.1 1.8 3.9E-05 40.7 7.4 37 108-151 5-42 (262)
463 TIGR03570 NeuD_NnaD sugar O-ac 88.0 1.1 2.4E-05 40.6 5.7 77 113-200 1-81 (201)
464 PRK12828 short chain dehydroge 87.8 5 0.00011 36.9 10.0 86 108-214 5-92 (239)
465 TIGR02469 CbiT precorrin-6Y C5 87.7 8 0.00017 31.9 10.4 94 109-210 19-120 (124)
466 TIGR03649 ergot_EASG ergot alk 87.7 0.72 1.6E-05 44.6 4.5 66 113-188 1-77 (285)
467 PRK07060 short chain dehydroge 87.7 2.4 5.1E-05 39.5 7.8 38 108-152 7-45 (245)
468 PRK09186 flagellin modificatio 87.7 2.2 4.8E-05 40.1 7.7 36 108-150 2-38 (256)
469 PRK06079 enoyl-(acyl carrier p 87.7 2.5 5.4E-05 40.3 8.1 86 108-214 5-93 (252)
470 PRK07877 hypothetical protein; 87.6 2.3 5.1E-05 47.9 8.9 110 78-197 71-215 (722)
471 PRK07523 gluconate 5-dehydroge 87.6 2 4.4E-05 40.6 7.4 37 107-150 7-44 (255)
472 COG1062 AdhC Zn-dependent alco 87.6 4.5 9.7E-05 41.9 10.1 69 112-190 187-266 (366)
473 TIGR03201 dearomat_had 6-hydro 87.5 3.4 7.4E-05 41.4 9.3 47 109-163 166-212 (349)
474 PRK01581 speE spermidine synth 87.3 4.5 9.7E-05 42.3 10.2 121 82-213 124-269 (374)
475 PRK06197 short chain dehydroge 87.3 2.4 5.2E-05 41.6 8.0 48 96-151 3-51 (306)
476 TIGR03325 BphB_TodD cis-2,3-di 87.3 2.9 6.4E-05 39.8 8.4 36 108-150 3-39 (262)
477 PRK10309 galactitol-1-phosphat 87.3 4.3 9.3E-05 40.4 9.9 46 109-162 160-206 (347)
478 PRK05867 short chain dehydroge 87.2 1.8 4E-05 40.9 6.9 36 108-150 7-43 (253)
479 PLN03209 translocon at the inn 87.2 1.2 2.6E-05 48.8 6.3 75 106-187 76-168 (576)
480 PRK06138 short chain dehydroge 87.0 3.6 7.7E-05 38.5 8.6 36 108-150 3-39 (252)
481 PLN02214 cinnamoyl-CoA reducta 86.8 2.4 5.2E-05 42.6 7.8 76 106-188 6-91 (342)
482 TIGR03855 NAD_NadX aspartate d 86.6 2.3 4.9E-05 41.3 7.2 64 144-214 6-71 (229)
483 PRK07231 fabG 3-ketoacyl-(acyl 86.6 3.4 7.3E-05 38.5 8.2 36 108-150 3-39 (251)
484 PLN02662 cinnamyl-alcohol dehy 86.6 2.3 5.1E-05 41.5 7.4 72 109-187 3-85 (322)
485 PRK13376 pyrB bifunctional asp 86.6 4.4 9.5E-05 44.1 10.0 66 107-181 171-244 (525)
486 PRK04523 N-acetylornithine car 86.5 2.7 5.8E-05 43.2 8.0 70 108-186 166-252 (335)
487 cd08239 THR_DH_like L-threonin 86.5 5.7 0.00012 39.2 10.3 90 109-209 163-259 (339)
488 cd05283 CAD1 Cinnamyl alcohol 86.5 4.5 9.8E-05 40.1 9.5 92 109-211 169-262 (337)
489 PRK12779 putative bifunctional 86.4 2 4.2E-05 49.9 7.7 72 109-187 305-401 (944)
490 cd08298 CAD2 Cinnamyl alcohol 86.3 4.7 0.0001 39.4 9.4 87 109-210 167-254 (329)
491 cd08255 2-desacetyl-2-hydroxye 86.3 6.7 0.00014 37.3 10.2 91 108-211 96-189 (277)
492 PRK04663 murD UDP-N-acetylmura 86.2 2.3 5E-05 44.5 7.6 70 108-185 4-75 (438)
493 PF02056 Glyco_hydro_4: Family 86.2 1.4 3E-05 41.6 5.3 79 113-192 1-87 (183)
494 COG0493 GltD NADPH-dependent g 86.1 2.8 6E-05 44.8 8.1 77 104-187 117-217 (457)
495 PRK06500 short chain dehydroge 86.1 3.9 8.5E-05 38.1 8.4 35 108-149 4-39 (249)
496 PRK07984 enoyl-(acyl carrier p 86.0 4 8.6E-05 39.6 8.6 35 108-149 4-41 (262)
497 TIGR03451 mycoS_dep_FDH mycoth 86.0 7.2 0.00016 39.2 10.8 92 109-211 176-275 (358)
498 KOG0399 Glutamate synthase [Am 85.9 2.8 6.1E-05 49.4 8.3 82 99-187 1774-1879(2142)
499 PRK07067 sorbitol dehydrogenas 85.8 4.3 9.4E-05 38.3 8.7 37 108-151 4-41 (257)
500 PRK08217 fabG 3-ketoacyl-(acyl 85.8 2.9 6.3E-05 38.9 7.4 36 108-150 3-39 (253)
No 1
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.9e-74 Score=559.08 Aligned_cols=288 Identities=33% Similarity=0.545 Sum_probs=277.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+.|+| |||+|||||+||+++|+||||| |++|+|++|.++.+|++|+++||. +.+++|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 58999 9999999999999999999999 999999999999999999999999 57999999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+||..|.+||+ +|.|+|++|++|.|+|||++++. .+.||+|++|+||+||+||+.||++|++| +|+|++++
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 79999999999999999999775 47999999999999999999999999996 89999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
++||+||+++++|++|+.++|++| +++|||++|+++||||||++|||++.++|+++||.+|++|++||.||++|+|++
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE~lhE~ 233 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLHEL 233 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCcccccccccc
Q 014834 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 343 ~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
+ .|++||+|.|+..|+++|| ||++||+|..+ + +..+++.|+++|++||||+|+|+|+++++.-++..++||
T Consensus 234 k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~g~p~l~~~r 307 (338)
T COG0059 234 K-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQAGRPKLEALR 307 (338)
T ss_pred H-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhcCCHHHHHHH
Confidence 9 9999999999999999999 78899998665 3 567789999999999999999999999999999999887
No 2
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=8.9e-68 Score=525.70 Aligned_cols=284 Identities=31% Similarity=0.505 Sum_probs=266.1
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
....|+| |+|||||+|+||.++|+||+++ |++|++++++ .++++.+.+.|+.. .+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~v-----~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFEV-----MSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCEE-----CCHHHHHhcCCEEE
Confidence 3588999 9999999999999999999999 9999999876 56778888889873 58999999999999
Q ss_pred EccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEE
Q 014834 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 184 Lavpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~l 262 (417)
+++|+..+.+++. +++++|++|++|+++|||+|++. .+.||+|+||++|+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988888886 69999999999999999999775 47999999999999999999999999996 899999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 263 iav~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
++++||+||++.+++++|+.++|++| +++|||++|+++||||||++|||++.++|+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCccccc
Q 014834 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 341 ~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
+++ .|++||+|+|+.+|+++|| +|+|||+|.++ + ++.+|+.|+++|++||+|+|||+||.+++.-+++
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~~g~~~ 299 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQAGRPT 299 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCHH
Confidence 997 9999999999999999999 88999998766 2 6789999999999999999999999998865543
No 3
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=3.2e-68 Score=545.84 Aligned_cols=312 Identities=27% Similarity=0.385 Sum_probs=294.2
Q ss_pred ccccccccchHhhhh-----hcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 014834 71 LLDFETSVFKKDAIS-----LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV 145 (417)
+|||||++||+|+++ |++++| |++.+..|+| |+|+|||||+||+++|.||+++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 778888 8888899999 9999999999999999999999 999999
Q ss_pred EecCC-----hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 014834 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (417)
Q Consensus 146 g~r~~-----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~ 220 (417)
++|.+ +++++.|.+.||. +.+++|++++||+|++++||..+..++++|+|+||+|++|.++|||+|++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 5789999999997 568999999999999999999988999999999999999999999999765
Q ss_pred hcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--eeccchhh
Q 014834 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (417)
Q Consensus 221 ~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~--~dvsgea~e~a~~L~~alG~~~--~iettf~~ 296 (417)
++.||+|++||+|+||+||+.||++|++| +|+|++|||+ ||++|+++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 56999999999999999999999999996 8999999999 8999999999999999999997 89999999
Q ss_pred hhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014834 297 EYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 297 e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~ 376 (417)
|+++||||||++|||++++.++++||.+|++|++|++||+++++++. .|+++|.++||..|+|++| ++++||.+..
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S--~tak~ga~~~- 287 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKIRAFEL- 287 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhcc--chhhcccccc-
Confidence 99999999999999999999999999999999999999999999998 9999999999999999999 6678999743
Q ss_pred cChhHHHHH----HHHHHhhccChHHHHHHHcCCcccccccccc
Q 014834 377 SYYPCMEIL----YECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 377 ~~~~~~~~m----~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
.+.+|+.| +++|++|+||+|+|+|+.++.+.++++..||
T Consensus 288 -~~~~k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r 330 (487)
T PRK05225 288 -SEQLKEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWR 330 (487)
T ss_pred -cHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHH
Confidence 35566666 9999999999999999999999999999998
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=3.3e-63 Score=496.61 Aligned_cols=288 Identities=32% Similarity=0.523 Sum_probs=269.3
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
...++| ++|||||+|+||.++|++|+++ |++|++++++++++++.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 9999999888778888898899874 589999999999999
Q ss_pred ccCCchHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~~~~~Vl-~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
++||..+.+++ ++|.+++++|++|+++|||++++.. +.||++++|||+|||+|++.+|++|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 6799999999999999999998875 4789999999999999999999999996 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
++++|+++++++.+++|+.++|+++ +++|||++|+++||||||++|||++.++++++|+.+|++|++||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCccccccccc
Q 014834 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 342 ~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
++ +|++||+|+|+.+|+++|| +|+|||+|..+ + ++.+|+.|+++|++||+|+|+|+||++++..++..-.+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~~~~~~~~~~ 305 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENKAGRPTFKAL 305 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHH
Confidence 97 9999999999999999999 78899998665 3 67899999999999999999999999998766554444
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=1.4e-60 Score=475.79 Aligned_cols=281 Identities=32% Similarity=0.514 Sum_probs=256.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+| |||+|||+|+||.++|++|+++ |++|++++++.+++++.+.+.|+.. .++.|++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9988888887666777777889873 468899999999999999
Q ss_pred CchHH-HHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+.+. .+.++|.++++++.+|+++|||++++++. .+|++++|||+|||+|++++|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 99555 45567999999999999999999998864 788899999999999999999999996 8999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITG 344 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~ 344 (417)
+++++++++.+++|+.++|..| +++|+|++|+++|+||++|+|||++|||+.+++|++|++||||++||++++||++
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~- 219 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK- 219 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 9999999999999999999996 8999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcHHHHHhcccCchhhhhhhhhhcc--ChhHHHHHHHHHHhhccChHHHHHHHcCCccccc
Q 014834 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 345 g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
|+++|++++|+..|+|+|| +|+|||+|..++ ++.+|+.|+++|++||+|+|+|+|+.+++..+.+
T Consensus 220 g~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~~~~~~ 286 (314)
T TIGR00465 220 LIVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENEAGKPA 286 (314)
T ss_pred HHHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhccCCcHH
Confidence 9999999999999999999 678999984443 5678899999999999999999999887655443
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=4.1e-40 Score=298.84 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=137.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|++ |+|+|||||+||.++|+||||| |++|+|++|++++++++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999999999999999 5799999999999999999
Q ss_pred CchHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl-~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|..|.++| ++|.|+|++|++|+++|||++++. .+.+|++++|++++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 99999999 479999999999999999999764 47899999999999999999999999996 8999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 014834 267 QDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~ 287 (417)
||.|+++++++++|+.++|+.
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
No 7
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-37 Score=299.24 Aligned_cols=219 Identities=18% Similarity=0.259 Sum_probs=198.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+||||||+|+||.+|+.+|.++ | .+|++.+|..++....+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 478888888666556888888873 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...+++.++.+ ..++++ |++++|+++..++. .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999998 777775 56999999999887 666 889999999999999 899999 777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
..++++++.+.+.+|+..+|.. .+++|++||..|+++||+|| ++|++.+++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8999999999999999999975 35668899999999999999 48999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
+. |+++|+.|+|. ..|+|+||||.
T Consensus 205 ~~-Gaakll~e~~~~p~~Lr~~VtSPG 230 (266)
T COG0345 205 VA-GAAKLLLESGEHPAELRDQVTSPG 230 (266)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCcCCC
Confidence 99 99999999999 89999999995
No 8
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=6.1e-35 Score=285.95 Aligned_cols=221 Identities=18% Similarity=0.243 Sum_probs=191.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||+|||+|+||.+|+++|.++ |+ +|++.+|+.++....+.+.|+.. +.++.|++++||+|||++|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLavk 72 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNVSNLKNASDKYGITI----TTNNNEVANSADILILSIK 72 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCHHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEeC
Confidence 6899999999999999999988 64 57777665444333333478754 5678889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+...++++++.++++++++ |++++|+++..+++ .++...+++|+|||+|..+ |+|++. ++.+
T Consensus 73 P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~~ 136 (272)
T PRK12491 73 PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCFN 136 (272)
T ss_pred hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEeC
Confidence 99999999999999998876 55999999998876 5555668999999999998 799999 5678
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
+.++.++.+.+..||..+|.. .+..|+.|+..++++||+|| +++++.+++++.|+|+++|.+++.|++
T Consensus 137 ~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~ 208 (272)
T PRK12491 137 EMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAV 208 (272)
T ss_pred CCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999999999999975 24457789999999999999 489999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
. |.++|+.++|. ..|+|+||||.-
T Consensus 209 ~-G~a~ll~~~~~~p~~l~~~V~sPGG 234 (272)
T PRK12491 209 L-GSAKMVLETGIHPGELKDMVCSPGG 234 (272)
T ss_pred H-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 9 99999999998 899999999953
No 9
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=7.2e-32 Score=264.23 Aligned_cols=220 Identities=14% Similarity=0.162 Sum_probs=185.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHH-HHHHcC-ceecCCCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFA-EARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~-~A~~~G-~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|+||+|||+|+||.+++.+|++. | .+|++++++.....+ ...+.+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57999999999999999999988 7 577777765433222 222332 332 3578888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
++||+...++++++.+++++++ +|+++.|+++..+++ .+|. .+++|+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998887 466999999988876 4443 58999999999998 789998 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----HHHHHHHHHHc-CCCHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VESLFRRFTEN-GMSEDLAYKNT 338 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----iea~~d~~v~~-Gl~~e~A~~~~ 338 (417)
+.+.++++++.+.+..||..+|.. .++.|++|+..++++||+||| ++++.+++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHV--------MTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCE--------EEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 668889999999999999999975 234567899999999999994 88999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 339 VECITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 339 ~q~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
.|++. |.++|+.++|. ..|+|+||||.
T Consensus 206 ~~~~~-G~a~l~~~~~~~p~~l~~~v~spg 234 (277)
T PRK06928 206 NFALA-GTGKLLVEEDYTFSGTIERVATKG 234 (277)
T ss_pred HHHHH-HHHHHHHccCCCHHHHHHhCCCCC
Confidence 99999 99999999997 99999999995
No 10
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.97 E-value=2.8e-30 Score=250.69 Aligned_cols=214 Identities=18% Similarity=0.229 Sum_probs=181.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||+|||+|+||.+++++|+++ +. ++++.+++..+ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 6899999999999999999987 62 36655553221 24433 4578888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
|+...++++++.++++++.+|++++|+++..++. .++.+..++|+|||+|... |.|++. +++..
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999887767788999999877765 4455556899999999776 577877 66778
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
+++.+..+.+..+|..+|.. .+++|+.|+..++++||+|| +++++.+++++.|+|+++|+++++|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88889999999999999965 24456689999999999999 4899999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHhcccCchh
Q 014834 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 344 ~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
|.++|+.++|. ..|+|+||||.-
T Consensus 203 -G~a~ll~~~~~~~~~l~~~v~spgG 227 (260)
T PTZ00431 203 -GSVHMVKASDQPVQQLKDDVCSPGG 227 (260)
T ss_pred -HHHHHHHhcCCCHHHHHHhCCCCCh
Confidence 99999999987 899999999953
No 11
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=249.26 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=197.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHH-HHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|||||.|+|..++++++..+ |+ +++.+.. ..++... .+..|+.. +.++.++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999998 86 4544444 3455555 78889886 666789999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
+|+.+.+++.++.+.+..+++| ++++|+++..+++ .++...+|||+|||+|..+ |+|..+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999998888888865 5999999988776 5667778999999999998 789986 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
..+++.++.+++..++..+|.. .|++|++++..|.|+|++||| +|++.|.+|+.|+||++|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999976 589999999999999999994 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh-hhhhh
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGEDK-KEFEK 372 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~~-~~~~~ 372 (417)
+. |.+||++++|. ..|||.||||.- ..|+-
T Consensus 206 ll-GAakMVl~s~qHP~~Lkd~V~SPgG~TI~gl 238 (267)
T KOG3124|consen 206 LL-GAAKMVLASGQHPAQLKDDVCSPGGTTIYGL 238 (267)
T ss_pred HH-hHHHHHHhccCCcHHHhCCCCCCCcchHHHH
Confidence 99 99999999998 999999999953 33443
No 12
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.97 E-value=9.6e-29 Score=241.69 Aligned_cols=220 Identities=13% Similarity=0.149 Sum_probs=185.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChh-hHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.+|+++|.++ | .+|++++|+.++ ....+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 7 577887776543 334445568764 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...++++++.+.++++++|+ +++|+++..+.+ .++.+.+|++.|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999898888766 569999877765 4456678999999999887 578887 566
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
..+++.++.+.+..||..+|... ++.+++|+..++++|++|+ +++++.|++++.|+++++|++++.++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~--------~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS--------VVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE--------EeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77788899999999999999742 2334568888999999999 48889999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
+. |.++|+.+++. ..|++.||+|.
T Consensus 210 ~~-gsa~~~~~~~~~~~~l~~~v~spg 235 (279)
T PRK07679 210 MI-GAAEMLKASEKHPSILRKEITSPG 235 (279)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhcCCCc
Confidence 99 99999997766 88999999995
No 13
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=2.9e-28 Score=232.17 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=181.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---E-EEEEecCC-hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~-ViVg~r~~-s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.+++.+|.+. |. + +++.+|++ ++..+.+.+.|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999887 52 3 55566643 34444455567654 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
||+.+.++++++.++++...+|++++|+++..++. .++.+..++++|||++..+ |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999988876433456889999988875 5566668999999999876 6889985 556
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
...++++.+.+..+|..+|... +..++.++..++++|+.|+ +++++.+.+++.|+|+++|++++.|++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~--------~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQ--------LCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEE--------EECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7788899999999999999762 2334557778999999999 488899999999999999999999999
Q ss_pred HHHHHHHHHHhcH-HHHHhcccCchh
Q 014834 343 TGIISKIISTQGM-LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~g~~~li~e~G~-~~l~~~vss~~~ 367 (417)
. |.++|+.+.+- ..|+|+||||.-
T Consensus 211 ~-g~~~~~~~~~~~~~l~~~v~spgG 235 (245)
T PRK07634 211 S-GSASMLEQTQDPANLREQVTTPGG 235 (245)
T ss_pred H-HHHHHHhCCCCHHHHHHhCCCCCh
Confidence 9 99999987433 999999999963
No 14
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.96 E-value=1.1e-27 Score=231.24 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=183.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEE-ecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg-~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.+|+++|+++ |+ +|+++ +|+. ...+.+.+.|+.. ..++.|+++++|+||+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~-~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNP-ARRDVFQSLGVKT----AASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCH-HHHHHHHHcCCEE----eCChHHHHhcCCEEEEEE
Confidence 5799999999999999999998 87 77777 5543 4455666778865 568889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...++++++.+.++++++| ++++|+++..+.. ..+.. +++++|||.|... |.+++. ++.
T Consensus 70 ~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~ 132 (266)
T PLN02688 70 KPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSL 132 (266)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEe
Confidence 9999999999998889898864 5789998776654 33333 7999999999887 567777 555
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
....+.++.+.+..|+..+|.. + +..++.|+..++++|++|+ +++++.+++++.|+++++|++.+.++
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~~--~------~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~ 204 (266)
T PLN02688 133 GPAATADDRDLVATLFGAVGKI--W------VVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQT 204 (266)
T ss_pred CCCCCHHHHHHHHHHHHhCCCE--E------EeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777889999999999999962 2 2345678888999999999 47899999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
+. ++++|+.++|. ..|++.|++|.-
T Consensus 205 ~~-gs~~l~~~~~~~~~~l~~~v~spgG 231 (266)
T PLN02688 205 VL-GAAKMVLETGKHPGQLKDMVTSPGG 231 (266)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 99 99999999888 999999999953
No 15
>PRK07680 late competence protein ComER; Validated
Probab=99.96 E-value=2.9e-27 Score=230.40 Aligned_cols=218 Identities=15% Similarity=0.176 Sum_probs=178.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|+||.+++.+|.++ |. +|.+++|+.++....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 6777777644433333333 6654 467888899999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...++++++.++++++++|+ +++|+++..++. .++ ..++++|||+|... +.|.+. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 99999999999999998888655 777898877765 333 36899999988654 367776 444
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTE-NGMSEDLAYKNTVE 340 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~-~Gl~~e~A~~~~~q 340 (417)
....+.+..+.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+|+++|++++.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667778889999999999954 24456778888999999999 47889999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 341 ~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
++. |.++|+.+++. ..|+|+||||.
T Consensus 205 ~~~-G~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLI-GMGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHH-HHHHHHHhcCCCHHHHHHhCCCCC
Confidence 999 99999999886 99999999996
No 16
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=1.8e-26 Score=223.04 Aligned_cols=222 Identities=16% Similarity=0.203 Sum_probs=181.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+||+|||+|+||.+++..|.++ | .+|.+++|+.++..+.....|+.. ..+..++++++|+||+++|
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPEKRAALAEEYGVRA----ATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHHHHHHHHHhcCCee----cCChHHHHhcCCEEEEEcC
Confidence 58999999999999999999988 7 577777776444333333347654 5678888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
|....++++++.+++ +..+|++++|++...++. .++.+.+++++|||.|... |.|++. +++..
T Consensus 72 ~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~~ 134 (267)
T PRK11880 72 PQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTANA 134 (267)
T ss_pred HHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecCC
Confidence 999999999998887 334567999998776664 4555678999999999765 567776 56677
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
..+.++.+.+..|+..+|....+ ..++.++..++++|++|+ +++++.+.+++.|+|+++|.+++.+++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~-------~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~ 207 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWV-------DDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVL 207 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEE-------CChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 78899999999999999964222 224468899999999998 4788889999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHhcccCchh
Q 014834 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 344 ~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
|.++++.++|. ..+++.|++|.-
T Consensus 208 -g~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 208 -GAAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred -HHHHHHHhcCCCHHHHHHhCCCCcH
Confidence 99999999888 999999999953
No 17
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=99.94 E-value=9.3e-28 Score=215.65 Aligned_cols=119 Identities=25% Similarity=0.408 Sum_probs=106.8
Q ss_pred hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014834 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++++++||.+|++|++||.||++++|++. .|+++|+++|+.+|+++|| +|++||.+
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 68899999999999999999999999999999999999999999999966 9999999999999999999 88999998
Q ss_pred hhc-c-ChhHHHHHHHHHHhhccChHHHHHHHcCCccccccccc
Q 014834 374 YSA-S-YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 374 ~~~-~-~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
..+ + ..++++.|+++|++||+|+|+|+|+.+++..++..-.|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~g~~~l~~~ 121 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQAGDPRLNAM 121 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcCCCHHHHHH
Confidence 443 3 46788999999999999999999999999888775444
No 18
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.94 E-value=1.5e-25 Score=216.20 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=170.8
Q ss_pred cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcE-EEEecCchhhhh
Q 014834 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (417)
Q Consensus 141 ~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~ 219 (417)
.+|++++|+.++..+.+.+.|+.. ..++.++++++|+|||++||+...++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 378888887655555666678765 567889999999999999999999999999988877765 569999999888
Q ss_pred hhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhh
Q 014834 220 QSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (417)
Q Consensus 220 ~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~ 299 (417)
+. .++.+.+++|+|||+|... |+|++. ++.+.+++.++.+.+..||..+|.. .++.
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--------VELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--------EEEC
Confidence 75 5566668999999999988 789999 6668889999999999999999975 1344
Q ss_pred hhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 300 ~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
++.|+..++++||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.++|. ..|++.|+||.-
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~-G~a~l~~~~~~~~~~l~~~v~spgG 214 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVK-GAAKLLEESGEHPALLKDQVTSPGG 214 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHcCCCCcH
Confidence 6789999999999999 4899999999999999999999999999 99999999977 999999999963
No 19
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.93 E-value=9.9e-25 Score=210.80 Aligned_cols=216 Identities=16% Similarity=0.178 Sum_probs=164.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||||||+|+||.+++++|++. |+ .+.+++|+.++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 75 3456666544444444444 4543 5688899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+...++++++. ++++++ |.+++|+++..++. .++....++++|||+|... +.|++.+ +..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 998899998762 567775 45889999888775 4455568999999998876 5788884 322
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGII 346 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~ 346 (417)
.+.+..++..+|....+. +|...|+|+..++..+..-.+++++.+.+++.|+|+++|++.+.+++. |.
T Consensus 133 -------~~~~~~l~~~lG~~~~~~----~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~-G~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVECD----SEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFA-SL 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEEEC----ChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 257899999999763222 244555555443222222236888999999999999999999999999 99
Q ss_pred HHH-HHHhcH--HHHHhcccCchh
Q 014834 347 SKI-ISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 347 ~~l-i~e~G~--~~l~~~vss~~~ 367 (417)
++| +.+++. ..|+|+||||.-
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spgG 224 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKGG 224 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCCc
Confidence 999 677777 899999999953
No 20
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.85 E-value=2.7e-20 Score=188.88 Aligned_cols=233 Identities=14% Similarity=0.075 Sum_probs=166.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
++|+|||+|+||.++|++|++. |+++.++.++..+ ....+...|+. +....++++++++||+||+|+|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 5899999999999999999999 9887777655332 22223334443 2223567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~~-~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
..++++++.+ .++++.+|+++++++....+.....++...++|..|| +++.. +..+..+......|.++++++....
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e-~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSH-KSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCc-hhhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999975322211112455678999999 55543 2233333333345677889988888
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKI 349 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~l 349 (417)
+.++.+.++.++..+|.. .+.. ..+..+..+++.+.+|.++-..+ +...|.+++.++.++.+.+. .++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~------~~~~HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfr-d~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVL------DAEEHDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFR-DITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEEC------CHHHHhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhccccc-CCccc
Confidence 899999999999999974 2222 22235677899999999766544 56668889999999999888 77777
Q ss_pred HHHhcHHHHHhcccCc
Q 014834 350 ISTQGMLAVYNSFSGE 365 (417)
Q Consensus 350 i~e~G~~~l~~~vss~ 365 (417)
.. +.-.-.+|.++++
T Consensus 221 a~-~~p~~w~di~~~N 235 (359)
T PRK06545 221 AS-SDPGMWRDILESN 235 (359)
T ss_pred cC-CCHHHHHHHHHHh
Confidence 63 2234445555443
No 21
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.79 E-value=1.7e-17 Score=163.85 Aligned_cols=253 Identities=15% Similarity=0.159 Sum_probs=172.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe-cCChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~-r~~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLavpd~ 189 (417)
++|+|||+|.||+++|+.|+.. |+.+.+.. +......+.+.+.|+.. ....+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 99774444 44445667777788873 222333 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh-HHHHHhhcccccCCCceEEEeecCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~-vr~ly~~G~~~~G~Gv~~liav~~d 268 (417)
+..++++++.|++++|++|++..+++-.-++.-....|++++||..||. -|+. ...+ .++-.+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM-~G~~~~~~l--------f~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPM-FGPEADAGL--------FENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCC-CCCcccccc--------cCCCEEEEcCCCC
Confidence 9999999999999999999999998643222222355665689999994 4552 2233 3567788999998
Q ss_pred CCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014834 269 VDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISK 348 (417)
Q Consensus 269 vsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~ 348 (417)
.+.+.++.+.+++.++|. +++.++.++|+.. | +.+++.-+.+..++...+-+.+....++.+++. ++-+
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~--~---a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as-----~~fr 215 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRV--M---AAVSHLPHAAALALANALAKLETEELLVLKLAS-----GGFR 215 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHH--H---HHHHHHHHHHHHHHHHHHHhcCcchhHHHhccc-----cchh
Confidence 888999999999999994 6777777777763 3 446666666777777777666653333444333 2222
Q ss_pred HHHHhcH--HHHHhcccCchhhh-hhhhhhccChhHHHHHHHHHHhhccChH
Q 014834 349 IISTQGM--LAVYNSFSGEDKKE-FEKAYSASYYPCMEILYECYEDVAAGSE 397 (417)
Q Consensus 349 li~e~G~--~~l~~~vss~~~~~-~~~~~~~~~~~~~~~m~~~~~~v~~g~~ 397 (417)
++.+--- ..||..++.-|+.. ... -...++.+.++.+.|++++.
T Consensus 216 d~tRia~~~P~m~~dI~~~N~~~~l~~-----i~~~~~~l~~l~~~i~~~d~ 262 (279)
T COG0287 216 DITRIASSDPEMYADIQLSNKEALLEA-----IERFAKSLDELKELIENGDA 262 (279)
T ss_pred hHHHHHcCChHHHHHHHHhCcHHHHHH-----HHHHHHHHHHHHHHHhcCcH
Confidence 2211111 33444443222210 111 12344566677777777774
No 22
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.76 E-value=1.4e-17 Score=163.14 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=134.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.++|+.|++. |++|.+++++ ....+.+.+.|... . ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~-~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRR-ESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 4899999999999999999999 9998877665 44567777777642 1 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014834 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsg 271 (417)
.++++++.++++++.+|+++++++...++... .. ...+|..||.. |.. ...++.+......|.++++++....+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~-~~--~~~~v~~HPm~-G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE-KL--HPRFVGSHPMA-GTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH-Hh--hCCceeeCCcC-CCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 99999999999999999999998764443211 11 12589999943 221 112233322233567888998888888
Q ss_pred HHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHH
Q 014834 272 RATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESL 320 (417)
Q Consensus 272 ea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~ 320 (417)
++.+.+..++..+|.. ++..+.+ ..+..+.+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~~~~------~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTADPE------EHDRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEcCHH------HHHHHHHHHcchHHHHHHH
Confidence 9999999999999964 3333322 2455577888888876543
No 23
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.75 E-value=3e-17 Score=180.11 Aligned_cols=229 Identities=14% Similarity=0.087 Sum_probs=164.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
+||+|||+|+||.++++.|+.. |+ +|++++++. ...+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~~-~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRRA-KSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECCh-hHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999998 73 677766654 3456677788741 12456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCch--hHHHHHhhcccccCCCceEEEe
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGP--SVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~--~vr~ly~~G~~~~G~Gv~~lia 264 (417)
...++++++.++++++.+|+++++++ +..+.+ .++. ..+++|||+|.. .. ..+.........|-++.++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~-~g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEK-SGVHAANADLFRNHKVILT 148 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCc-chhhhhhhHHhCCCeEEEE
Confidence 88999999999999999999999986 444443 2332 245667777733 21 0111000011123456678
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
+....+.++.+.+..++..+|.. ++. ..++.++..++++|++|+ +.-++.+.+.+.|.. +.+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~-~~~------~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~~a~~~f~ 220 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGAD-VLH------MDVAHHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFRYAAGGFR 220 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-EEE------cCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHhhhccchh
Confidence 88888889999999999999964 222 233457778999999999 777888888887764 468899998887
Q ss_pred HHHHHHHHHhcHHHHHhcccCc
Q 014834 344 GIISKIISTQGMLAVYNSFSGE 365 (417)
Q Consensus 344 ~g~~~li~e~G~~~l~~~vss~ 365 (417)
+++++. .+.-...+|.++++
T Consensus 221 -~~tRia-~~~p~~~~di~~~n 240 (735)
T PRK14806 221 -DFTRIA-ASDPVMWHDIFLAN 240 (735)
T ss_pred -cccccc-cCCHHHHHHHHHHh
Confidence 777777 33445566666655
No 24
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.74 E-value=3.8e-16 Score=162.77 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=147.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+||| +|+||.++|+.|++. |++|++++++.+...+.+.+.|+.. ..+..+++.++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999999 9998888876554456777778764 4578889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..++++++.++++++++|+++++++ ...+.+ .+|++.++|..||.. |+.. ..| .|-.+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-ccc--------CCCEEEEecCC
Confidence 9999999999999999999888753 233433 456678999999842 2221 112 34566678777
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHGIVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
..++++.+.+..++..+|.. ++.++.+++++ ..++ ++..+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~~-v~~~~~e~HD~------~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGAR-VIVTSPEEHDR------IMSVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCCE-EEECCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 77888999999999999964 44444344433 2334 444444566677778888999998876655
No 25
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.73 E-value=3.9e-16 Score=152.44 Aligned_cols=195 Identities=17% Similarity=0.137 Sum_probs=131.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
+||+|||+|+||.++|++|++. |+ +|++++++ ....+.+.+.|+... ..+.+++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~~-~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDHN-ELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcCC-HHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999998 75 56655554 444566777887521 34667765 499999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CchhHHHHHhhcccccCCCceEEE
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pnt------pg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
...+++.++.+ ++++++|++++..+....+. .... ...++|+.||+. |......+| +|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~-~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES-VPKH-IRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH-HHHh-cCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 99999888876654322211 0010 124799999984 333222333 3566767
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchh-hhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGI-LLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~-L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
++..+.+.++.+.+..++..+|. +++.++.++++ .... +++..+.+..++.+.+. .+.+++....
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD------~~~a~vs~lph~~a~~l~~~~~-~~~~~~~~~~ 204 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHD------LHAAYISHLPHIISFALANTVL-KEEDERNIFD 204 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHH------HHHHHHhHHHHHHHHHHHHHHH-hcCChHHHHh
Confidence 87777788899999999999996 45554433332 2333 35555545555666654 4665555434
No 26
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.71 E-value=5.6e-16 Score=153.56 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=136.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++|+|||+|+||.++++.|++. |+ +|++++++ ....+.+.+.|+.. ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 75 77766665 34566777777631 12456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
...++++++.++++++.+|+++++++....+......++++.++..||-..... ..+..+......|.++++++....
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~--~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEH--SGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcc--cchhhcCHHHHCCCeEEEeCCCCC
Confidence 888999999999999999998888764333221113456678898899542111 011111111123566778877777
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~ 321 (417)
+.++.+.+..++..+|.. ++..+ .+..|..+++.+.+|.++-.++
T Consensus 156 ~~~~~~~~~~l~~~lG~~-~~~~~------~~~hD~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 156 DPAAVARLTAFWRALGAR-VEEMD------PEHHDLVLAITSHLPHLIAYTI 200 (307)
T ss_pred CHHHHHHHHHHHHHcCCE-EEEcC------HHHHhHHHHHHhhHHHHHHHHH
Confidence 788999999999999974 22222 2235567889999999765544
No 27
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.71 E-value=2e-17 Score=171.39 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=93.7
Q ss_pred hhhhccccchhhhchHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014834 298 YKSDIFGERGILLGAVH-GIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 298 ~~~dl~ge~t~L~G~~p-A~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~ 376 (417)
..+.-|=++++|+|.+. +.+++.||++|++|++||.||++++|+++ +|++||+|+|+.+|+++|| +|||||+|..
T Consensus 348 ~~~~~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~- 423 (487)
T PRK05225 348 ISEQEYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLF- 423 (487)
T ss_pred chhHHHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCccc-
Confidence 34444668899999765 78999999999999999999999999997 9999999999999999999 8999999843
Q ss_pred cChhHHHHHHHHHHhhccChHHHHHHHcCCccccc
Q 014834 377 SYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 377 ~~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
...+.+.|+++|++||+|+|+|+| .+++...++
T Consensus 424 -g~~vi~~mk~~l~~Iq~G~fak~~-~e~~~g~~~ 456 (487)
T PRK05225 424 -SHAAVPLLKDFMATLQPGDLGKGL-PSNAVDNAQ 456 (487)
T ss_pred -ChHHHHHHHHHHHHcCCCHHHhhH-HhccCCcHH
Confidence 244557999999999999999999 887776544
No 28
>PLN02256 arogenate dehydrogenase
Probab=99.66 E-value=6.5e-15 Score=147.02 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
++|+|||+|+||.++++.|++. |.+|++.+++. ..+.+.+.|+.. ..+.++++ .++|+||+|+|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999988 88888777653 245667778764 56777876 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~eI-~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
..++++++ .++++++++|++.++++ +..+.. .++.+.++|++||+.....-... -.+.+.+++..
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGG--------WAGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCccc--------cCCCeEEEecc
Confidence 99999998 68899999988777653 344443 45667889999998865541111 13455555432
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhh
Q 014834 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYKS 300 (417)
Q Consensus 267 ----~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~ 300 (417)
.+.++++.+.++.++..+|+ ++++.+.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 34567889999999999995 5777777777664
No 29
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.65 E-value=1.2e-14 Score=147.31 Aligned_cols=255 Identities=12% Similarity=0.144 Sum_probs=160.3
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCChh----hHHHHHHcCceecCC
Q 014834 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----s~~~A~~~G~~~~~~ 167 (417)
+||.|-|.||| |.+||.+|.+. |++|++++++.+. ..+...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777788876 88999999999 9999988876432 344566778765
Q ss_pred CcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhhhh-hhcccCCCCCccEEEeccCCCchhHH
Q 014834 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGHL-QSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~-~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
..+..+++++||+||+++|+.. ..++++++.++++++++|++++.+..... +.....++.....++++|..|+.+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~- 149 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVP- 149 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccc-
Confidence 5688899999999999999988 67899999999999999887776643322 1000122322234455555555431
Q ss_pred HHHhhcccccCCCceEEE----eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH-HHH-
Q 014834 246 RLYVQGKEINGAGINSSF----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI-VES- 319 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~li----av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~-iea- 319 (417)
|.+ +.|...+. +.....+.++.+.+..++.++|.. ++... .+..+....+...+.+. +.+
T Consensus 150 -----Gae--~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~------~g~~~~vk~~~n~l~av~~a~~ 215 (342)
T PRK12557 150 -----GTP--QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP------ADVVSAVADMGSLVTAVALSGV 215 (342)
T ss_pred -----ccc--cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 100 11222211 123344778999999999999963 22221 12333322222233331 111
Q ss_pred --HHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCch----hh---hhhhhhhccChhHHHHHHHHH
Q 014834 320 --LFRRFTENGMSE-DLAYKNTVECITGIISKIISTQGMLAVYNSFSGED----KK---EFEKAYSASYYPCMEILYECY 389 (417)
Q Consensus 320 --~~d~~v~~Gl~~-e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~----~~---~~~~~~~~~~~~~~~~m~~~~ 389 (417)
.+..+.+.|..| +++.+.+.|++. ++++|+.++|++.|-+.+. |. ++ .|++.- ..-....+++++++
T Consensus 216 aE~~~l~~~~~~~p~~~~~~~~~~~~~-~~a~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 292 (342)
T PRK12557 216 LDYYSVGTKIIKAPKEMIEKQILMTLQ-TMASLVETSGVDGLLKALN-PELLLRSASSMHLLEKQ-KDLDAALEILENLD 292 (342)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhcC-HHHHhhhHhhCCcchhh-hhHHHHHHHHHHHH
Confidence 333445555555 778888999999 9999999999999988765 31 11 133310 01233457888888
Q ss_pred Hhhcc
Q 014834 390 EDVAA 394 (417)
Q Consensus 390 ~~v~~ 394 (417)
+++..
T Consensus 293 ~~~~~ 297 (342)
T PRK12557 293 EDLLK 297 (342)
T ss_pred HHHhh
Confidence 88743
No 30
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=3.1e-14 Score=140.94 Aligned_cols=214 Identities=12% Similarity=0.120 Sum_probs=142.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----cCceecC----------CCcCCHHhh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----~G~~~~~----------~~~~s~~Ea 175 (417)
++||+|||+|+||.++|..|... |++|++++++.+ ..+.+.+ .|....+ ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVMEG-ALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 999888776543 2333322 1210000 013567788
Q ss_pred cCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcc
Q 014834 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 176 ~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~ 252 (417)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+++++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999986 457888888888888776 5888988776654 3444557999999999866
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHH
Q 014834 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSED 332 (417)
Q Consensus 253 ~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e 332 (417)
+. ... +++....+.+..+.+..++..+|...++- +.+..-| ++.....+++.-++..+.+.|++++
T Consensus 145 ---~~-l~~-i~~g~~t~~~~~~~v~~l~~~~G~~~v~~-----~~d~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 145 ---IP-LVE-VVRGDKTSPQTVATTMALLRSIGKRPVLV-----KKDIPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ---Cc-eEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEE-----cCCCCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 23 223 45566778899999999999999742111 0010011 1222333444445555667778998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHH
Q 014834 333 LAYKNTVECI------TGIISKIISTQGMLAV 358 (417)
Q Consensus 333 ~A~~~~~q~~------~~g~~~li~e~G~~~l 358 (417)
+......+.. . |--.++-..|+..+
T Consensus 211 ~id~~~~~~~g~~~~~~-Gp~~~~D~~Gl~~~ 241 (311)
T PRK06130 211 DIDEVVKWSLGIRLALT-GPLEQRDMNGLDVH 241 (311)
T ss_pred HHHHHHHhcCCCCccCC-CHHHHhhhhccchH
Confidence 8877654331 2 44555556666433
No 31
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.61 E-value=2.5e-14 Score=139.25 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=129.2
Q ss_pred HHHHHHhhhhhhcCC--cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCC
Q 014834 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (417)
Q Consensus 126 iA~~Lr~s~~~~~~G--~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk 203 (417)
+|+.|+++ | ++|+ +.+.+....+.|++.|+.. .. .+..++++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~v~-g~d~~~~~~~~a~~~g~~~--~~-~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVEVY-GYDRDPETLEAALELGIID--EA-STDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSEEE-EE-SSHHHHHHHHHTTSSS--EE-ESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeEEE-EEeCCHHHHHHHHHCCCee--ec-cCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 7 5654 5555567788998999874 22 2336789999999999999999999999999999
Q ss_pred CCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 014834 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (417)
Q Consensus 204 ~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~a 283 (417)
+|++|++.++++....+.-.-.+|.++++|.+|| +.|+. ++.|+..+.....|.++++++..+.+.++.+.+++++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999864322211124557899999999 44553 234444445556789999999988778999999999999
Q ss_pred hCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 284 LGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 284 lG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
+|+ +++..+.++|++. | +.+++.-+.+.-++...+.+.+.+......
T Consensus 149 ~Ga-~~~~~~~eeHD~~--~---A~vshlpH~~a~al~~~~~~~~~~~~~~~~ 195 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRI--M---AYVSHLPHLLASALANTLAELSSDDPDILR 195 (258)
T ss_dssp CT--EEEE--HHHHHHH--H---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHH--H---HHHHHHHHHHHHHHHHHHHhcCCChHHHHh
Confidence 996 6777787788774 2 334445555555566655544444443333
No 32
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.58 E-value=4.4e-13 Score=134.16 Aligned_cols=226 Identities=14% Similarity=0.148 Sum_probs=165.4
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHHHHHHcCceecCC
Q 014834 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~~A~~~G~~~~~~ 167 (417)
+||.|-|.||| |.+||++|.++ |++|++++++.+ ..++...+.|+..
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 47778888876 88999999999 999999987543 2235567788876
Q ss_pred CcCCHHhhcCcCCEEEEccCCchHH-HHHHHHHhcCCCCcEEEEecCchh---hhhhhcccC-CCCCccEEEeccCC-Cc
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLD-FPKNIGVIAVCPKG-MG 241 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~-~~~dv~VI~v~Pnt-pg 241 (417)
+.+..|+++++|+||+++|+..+. +|+..+.+++++|++|++++-++. .++-+..+. -|+|+.|...||-+ |+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678999999999999999998864 788889999999999998876643 222221222 25799999999943 44
Q ss_pred hhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----H
Q 014834 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----V 317 (417)
Q Consensus 242 ~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----i 317 (417)
+.-.+.|..+ |-. +.-..-+++++.+...+|.+..|+. ++ ..+-++.+.++-.|-.+.+. +
T Consensus 151 ~~~~~~~~~~------~~~--~~~~~~A~ee~i~~~~el~~~~~~~-~~------~~pa~l~~~v~Dm~s~vta~~~~gi 215 (341)
T TIGR01724 151 TPQHGHYVIG------GKP--TAGKEMATEEQISKCVELAKSTGKK-AY------VVPADVTSAVADMGSLVTAVALAGV 215 (341)
T ss_pred CCCCceeeec------ccc--ccccccCCHHHHHHHHHHHHHhCCC-ee------ecchhhcchhhhHHHHHHHHHHHHH
Confidence 4433334443 111 1124567899999999999999985 11 23445666665555555553 3
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 318 ESLFRRFT-ENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 318 ea~~d~~v-~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
-.-++..+ -.|-|.+.+-+.+.+++. .++.|+.++|+..|-+.+.
T Consensus 216 l~y~~~~t~i~~ap~~~~~~~~~~~l~-~~a~l~~~~Gi~~~~~~l~ 261 (341)
T TIGR01724 216 LDYYYVGTQIINAPKEMIEKQILMTLQ-TMASLVETSGVEGMAKAIN 261 (341)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 34556664 469999999999999999 9999999999999988765
No 33
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.58 E-value=1.7e-13 Score=140.21 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=114.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||+ |.||+++|+.|++. .+++|+..++. +.+ ..+.++++++||+||||+|...
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~g~D~~---------d~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVIGHDPA---------DPG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEEEEcCC---------ccc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 16777644432 111 3467888999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~~~---lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..++++++.++ +++|++|++.++++-.-.+. ..+.+.+||..||. .|+....+ .+|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPM-aG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPM-TAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCC-CCCCCCcc--------cCCCeEEEeCCC
Confidence 99999998875 89999999999997432222 12334679999994 34431111 357888888664
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhh
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKS 300 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~ 300 (417)
..+..+.+++|+..+|+ +++.++.++|+..
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 33557889999999995 5777787888764
No 34
>PLN02712 arogenate dehydrogenase
Probab=99.58 E-value=1.6e-13 Score=149.89 Aligned_cols=195 Identities=12% Similarity=0.075 Sum_probs=131.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViL 184 (417)
..+++ +||||||+|+||.++|++|++. |++|+++++.. .. +.+.+.|+.. ..+.++++. ++|+||+
T Consensus 365 ~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~~-~~a~~~Gv~~----~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 365 NDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-YS-DEAQKLGVSY----FSDADDLCEEHPEVILL 431 (667)
T ss_pred CCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-HH-HHHHHcCCeE----eCCHHHHHhcCCCEEEE
Confidence 34566 8999999999999999999998 99988777763 22 5566788764 567888775 5999999
Q ss_pred ccCCchHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 185 LISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~-~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
|+|+....++++++.+ .+++|++|+++++.+ +..+.. .+|.++++|+.||+.....-+..|.. .....+|..
T Consensus 432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~ 507 (667)
T PLN02712 432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVR 507 (667)
T ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcE
Confidence 9999999999998875 689999999887663 334433 55678899999998765541111111 000011111
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCC
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMS 330 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~ 330 (417)
+ .......+..+..+.++..+|+ ++++++.++|+.. + +.+..+|- .+...+++.|++
T Consensus 508 --v-~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~--~----A~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 508 --I-GSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH--A----AGSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred --e-CCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH--H----HHHHHHHH---HHHHHHHHCCCc
Confidence 1 1112223455666799999995 6777787777642 2 22223333 345777778875
No 35
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.58 E-value=1.2e-14 Score=143.89 Aligned_cols=196 Identities=20% Similarity=0.178 Sum_probs=127.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||||||+|+||.+||+||.+. |++|.+++|..++..+.+.+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999999887
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 192 ~-~Vl~---eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~-~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
. +|+. .+.+.++||+++++++-++...-.+--..+ ..++.++ =+|-.=+.. ..+ .|.-. |-+.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~-------~GtLt-imvG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA-------AGTLT-IMVG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh-------hCceE-EEeC
Confidence 5 6774 599999999999999877532111000011 1223333 122111111 111 23333 2334
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc-hHHH-HHHHHHH---HHHHcCCCHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG-AVHG-IVESLFR---RFTENGMSEDLAYKNT 338 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G-~~pA-~iea~~d---~~v~~Gl~~e~A~~~~ 338 (417)
. +.++.+.++-++..+|.. ++ +.-..=.+..+=+|+ .+-+ .+.++.| .+.++|++++..+...
T Consensus 139 G--~~~~f~r~~pvl~~~g~~-i~------~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi 206 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN-IV------HVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVI 206 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc-eE------EECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 568999999999999974 11 111111111111222 1111 2444444 4478999999887743
No 36
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.56 E-value=2.8e-13 Score=138.73 Aligned_cols=179 Identities=9% Similarity=0.026 Sum_probs=125.3
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 110 gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
.+++|+||| +|.||.++|+.|++. |++|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99988877631 12456788899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
....++++++.+ +++|++|++.++++. ..+.. ..+. +||..||...... .+ ..|-..++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~~--~fvg~HPm~G~~~------~~----~~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHSG--PVLGLHPMFGPDV------GS----LAKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCCC--CEEeeCCCCCCCC------cc----cCCCEEEE--
Confidence 999999999988 999999999988743 23322 2222 6999999554322 11 12333433
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
....+.++.+.+..++..+|. .++..+.++|+.. + +.+++..+.+.-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~--~---a~vshLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQN--M---AFIQALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333355788899999999996 5666676666653 2 233433333344555666667888776544
No 37
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.54 E-value=1.5e-13 Score=134.66 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=116.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH----------HHHHHcCceec-------CC--CcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE-------NG--TLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~----------~~A~~~G~~~~-------~~--~~~s 171 (417)
|+||+|||+|.||.++|..|... |++|++.+++.+... +...+.|.... .+ ...+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 57999999999999999999999 999888776543321 12333442100 00 0234
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
.+ .+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.+ .++..-+++++||+.|.+.
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~----- 147 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPV----- 147 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCccc-----
Confidence 54 47899999999998776 57999999999999987 6889998877765 3333457999999999988
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
..++. ++++...+.+..+.+..++..+|..
T Consensus 148 -------~~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 148 -------MKLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred -------CccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 34564 5667888899999999999999975
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.52 E-value=9.2e-13 Score=139.40 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=133.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH------------------HcC-ceecCCCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~------------------~~G-~~~~~~~~~s 171 (417)
++||||||+|+||.+||.+|..+ |++|+++++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999999886543222110 012 332 467
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+++++++||+|+.++|+... ..++.++.+.++++.+|. -++|+.+..+.+ .++..-.++..||+.|...
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 88999999999999999874 357788888888887654 667887766654 3333447999999999865
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH-HHHHHHHHHHHHc
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH-GIVESLFRRFTEN 327 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p-A~iea~~d~~v~~ 327 (417)
+. .. .++.....+.+..+.+..++..+|...++- + .... ..+++.+. +++.-++..+.+.
T Consensus 146 -------~~-Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~~-----~---k~~~--gfi~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 146 -------LP-LV-ELVGGGKTSPETIRRAKEILREIGMKPVHI-----A---KEID--AFVGDRLLEALWREALWLVKDG 206 (495)
T ss_pred -------Cc-eE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEee-----c---CCCc--chhHHHHHHHHHHHHHHHHHcC
Confidence 22 22 355566677899999999999999752111 1 1111 12333322 2334445555678
Q ss_pred CCCHHHHHHHHHHH
Q 014834 328 GMSEDLAYKNTVEC 341 (417)
Q Consensus 328 Gl~~e~A~~~~~q~ 341 (417)
|+++++.....-+.
T Consensus 207 ~~s~~~id~~~~~g 220 (495)
T PRK07531 207 IATTEEIDDVIRYS 220 (495)
T ss_pred CCCHHHHHHHHhhc
Confidence 89999888765544
No 39
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.50 E-value=6.2e-14 Score=115.30 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=74.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEE-ecCChhhHHHHHHcCceecCCCcC-CHHhhcCcCCEEEEccC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~ViVg-~r~~s~s~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViLavp 187 (417)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.++.. .. +..|+++++|+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788856 677666677778888664 34 79999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi-~a~G 213 (417)
|+...++++++ +...++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888765 5554
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.49 E-value=1.4e-13 Score=124.84 Aligned_cols=149 Identities=22% Similarity=0.223 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||||||+|+||.+||++|.++ |++|.+++|+.+ ..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPE-KAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHH-HHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchh-hhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 999998887754 455666678876 7899999999999999999866
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~-~~Vl~e--I~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+ .+++.+ +.+.+++|+++++++-.+.. .+.+ ..-++++.++- +|-.-++. .-+.| -++.++
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~~g------~l~~~~- 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAEEG------TLTIMV- 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHHHT------TEEEEE-
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccccc------ceEEEc-
Confidence 5 579887 99999999999988876542 2222 11124555553 22111111 11222 134433
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
.. +.++.+.++.++..+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 33 45788999999999986
No 41
>PLN02712 arogenate dehydrogenase
Probab=99.48 E-value=2e-12 Score=141.42 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=118.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
++|||||+|+||.++|++|++. |++|++++++.. .+.+.+.|+.. ..+.++++ +++|+|++|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~~--~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSDH--SLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH--HHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 998877776532 35677788764 56777755 57999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee-
Q 014834 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (417)
Q Consensus 191 ~~~Vl~eI~-~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav- 265 (417)
..++++++. +++++|++|+++.+++.. .+.. .+|++.++|..||.. |+.. ...| -.|...+++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999999887632 2222 456778899999965 4431 1111 1334444442
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhh
Q 014834 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (417)
Q Consensus 266 ---~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~ 299 (417)
+.....+..+..++++..+|+ ++++++.++++.
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~ 225 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDK 225 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHH
Confidence 112222456677899999996 677777667655
No 42
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.46 E-value=1.4e-12 Score=128.47 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=112.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----------HHHHcCceec-------C-CCcCCH
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----------EARAAGFTEE-------N-GTLGDI 172 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----------~A~~~G~~~~-------~-~~~~s~ 172 (417)
++||+|||+|.||.+||.+|..+ |++|++++++.++..+ ...+.|.... + -...+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 48999999999999999999999 9999888776433211 1222221000 0 002334
Q ss_pred HhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHh
Q 014834 173 YETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~ 249 (417)
.+++++||+||+++|... ...++.++.+.++++++|+ .++|+++..+.+ ......+++++||..|...
T Consensus 78 ~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~------ 148 (295)
T PLN02545 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI------ 148 (295)
T ss_pred HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc------
Confidence 467899999999999444 4568888999999999875 889998877665 3334468999999888776
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 250 ~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+. .. .++.+...+.+..+.+..++..+|..
T Consensus 149 ------~~-lv-eiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 149 ------MK-LV-EIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred ------Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 12 22 35667778889999999999999975
No 43
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.44 E-value=2.9e-12 Score=126.59 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--------------ceecCCCcCCHHhhc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------------~~~~~~~~~s~~Ea~ 176 (417)
|+||+|||+|+||.++|.+|.+. |++|.+++|.... .+...+.| +.. ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPEQ-AAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 68999999999999999999999 9999888775433 33333332 222 45777889
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe-cCchhh-------hhhhcccCCCC-CccEEEeccCCCchhHHHH
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLG-------HLQSIGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a-~G~~i~-------~~~~~~i~~~~-dv~VI~v~Pntpg~~vr~l 247 (417)
+++|+||+++|+....++++++.++++++++|+.. .|+... .+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 99999999999988889999999999999977644 487542 2222 2222 123556678664443
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
+.|.+.++.... .+.+..+.+..++...|.
T Consensus 143 --------~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIAS-TDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEEe-CCHHHHHHHHHHhCCCCE
Confidence 123322222222 245778888888888875
No 44
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.42 E-value=4.5e-12 Score=120.24 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=109.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+||+||| .|+||.+++..|.+. |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 999999999999999 99998888765543333322 13210 001236678899999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-----------------hhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-----------------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
+++|++.+.++++++.+.++. ++|+ .+.|+.+ ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999988877754 6655 6678765 22332 355546899999999988754
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~al-G~~ 287 (417)
.. . .+.+...++| . | ++++.+.+.+|...+ |..
T Consensus 150 ~~-~-----~~~~~~~~v~-G-d-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 DV-D-----DEVDCDVLVC-G-D-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred CC-C-----CCCCCCEEEE-C-C-CHHHHHHHHHHHHhcCCCC
Confidence 31 1 1234555444 2 2 346999999999999 853
No 45
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.40 E-value=1.1e-11 Score=122.90 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=124.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||||||+|+||.+|+++|.+. |++|.++++.. + .+...+.|... +.+..|++++||+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 3799999999999999999999 99998887763 2 34455677764 57888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEecCchhhh---hhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 192 -ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 -~~Vl~---eI~~~lk~gaiLi~a~G~~i~~---~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
.+++. .+.+.+++|++|++++...... +.+ ..-..++.++- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56763 3677789999999998876431 211 11134666766 57444333 2233 3323232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
.. +.+..+.++.++..+|.....--..-.-...++.. ...+.....++.|+ +..+.+.|++++..+..
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~-N~l~~~~~~a~~Ea-~~la~~~Gld~~~~~~~ 203 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVAN-QIIVALNIEAVSEA-LLFASKAGADPVRVRQA 203 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH
Confidence 33 46789999999999997421100000000111111 11111123334443 23457899999988853
No 46
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.39 E-value=9.9e-12 Score=123.13 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=124.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||+|||+|+||.+||.+|.+. |++|.+++++.++ .+...+.|... +.+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~~-~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQA-VDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 57999999999999999999999 9999888876544 45555567654 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+ .+++. .+.+.+++|+++++.+-+... .+.+ .....++.++ =+|-.-+.. .-+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 4 56764 477889999998877765432 2211 1112345554 344322221 112 2344323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
+.. +.+..+.+..++..+|.. ++... .-.-...++.. -.+++...+.+--++..+.+.|++++..+......
T Consensus 137 -~gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~ 209 (296)
T PRK15461 137 -AGG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLIN--NYMSIALNALSAEAAVLCEALGLSFDVALKVMSGT 209 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 233 557899999999999974 21110 00000111100 01222222333334456689999999887654443
No 47
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.39 E-value=6.2e-11 Score=117.90 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=125.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcCceecC---------CCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~~---------~~~~ 170 (417)
|++|+|||.|.||.++|.+|.++ |++|+++++..+. .+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPAA-AAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 9999988876432 222 2234531000 1146
Q ss_pred CHHhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++.+++++||+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||-.|....
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3467777777666555443 233444444544 33444579999997775441
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhch-HHHHHHHHHHHHHH
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGA-VHGIVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~-~pA~iea~~d~~v~ 326 (417)
.. ..++++...+.+..+.+..++..+|... +... .+ .. +.+++- ..+++.-++..+.+
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~~-v~v~--~~-~~------G~i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQSP-VRLR--RE-ID------GFVLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCEE-EEec--CC-Cc------cHHHHHHHHHHHHHHHHHHHc
Confidence 12 2255566677899999999999999742 1110 01 01 113332 22344445555667
Q ss_pred cCCCHHHHHHHHH
Q 014834 327 NGMSEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|+++++......
T Consensus 208 g~~~~~~id~~~~ 220 (308)
T PRK06129 208 GVASVDDIDAVIR 220 (308)
T ss_pred CCCCHHHHHHHHH
Confidence 7899998776543
No 48
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=2.5e-11 Score=120.28 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~---ADIViLavpd 188 (417)
++|||||+|+||.+||++|.+. |++|++++|+.++ .+.+.+.|... ..++++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~~-~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQEA-VDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999999 9999888876443 45556678765 5688888876 6999999999
Q ss_pred c-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..++.++ =+|-.-+.. .-+ .|. . +-
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---HHh-------cCC-e-EE
Confidence 8 667899999999999999998876543 12221 1 112345554 234221211 111 344 3 23
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
+.. +.++.+.++.++..+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAP 154 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcC
Confidence 344 45788999999999996
No 49
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.37 E-value=3.6e-11 Score=119.23 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=102.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh---cCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea---~~~ADIViLavpd 188 (417)
+||||||+|+||.+||++|.+. |++|.+++|+.++ .+...+.|... ..+++++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~~-~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQDA-VKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 4899999999999999999999 9999888776544 45555667654 3455554 4578999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
....++++++.+++++|++|++++... .....+ ..-+++++++-....+..... -.|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a-----------~~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGR-----------ERGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHH-----------hcCC-e-eee
Confidence 977899999999999999998876542 111111 112345677764333221111 1354 3 333
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 014834 266 HQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~ 286 (417)
.. +.++.+.+..++..+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 46889999999999986
No 50
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.35 E-value=2.9e-11 Score=119.15 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=111.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH--------------cCceecC---------C
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~--------------~G~~~~~---------~ 167 (417)
++||+|||+|.||.++|..|.++ |++|++++++.+. .+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEEI-LKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 48999999999999999999999 9999888776432 322211 1211000 0
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhH
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v 244 (417)
...+. +++++||+||+++|++.. .++++++.+.++++++|+ .++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12344 678999999999998863 578888999999998765 677887766654 33344579999999998872
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 245 r~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.++.. ..+...+.+..+.+..++..+|..
T Consensus 152 ------------~~vEv--~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIEV--VRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEEE--eCCCCCCHHHHHHHHHHHHHcCCe
Confidence 34432 367778899999999999999975
No 51
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.35 E-value=4.8e-11 Score=117.42 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=109.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cC-------------ceecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G-------------~~~~~ 166 (417)
|+||+|||+|.||.++|..|.++ |++|++++++.+. .+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQEQ-LESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 58999999999999999999999 9999888776433 333221 11 221
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+.+.++++++||+||.|+|+.... .++.++.++++++++| +.++.+.+..+.+ ......+++.+|+-.|...
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 457888999999999999988753 5778898999999977 5677777766554 2222345788888765543
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+--..++.+...+.+..+.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 122335556667889999999999999964
No 52
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.34 E-value=2.2e-10 Score=112.77 Aligned_cols=212 Identities=16% Similarity=0.164 Sum_probs=135.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------------------------cCceec
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------------AGFTEE 165 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------------------------~G~~~~ 165 (417)
++||+|||.|.||.++|..|..+ |++|++++++.+ ..+.+.+ ..+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 48999999999999999999998 999988877643 2222221 12222
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
+.+.++++++||+||.++|.+. ..++++++.+.++++++|+ ..+++.+..+.+ ..+..-+++..||-.|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 4678889999999999999764 4578899999999998874 555666655443 223334799999977755
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHH
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLF 321 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~ 321 (417)
. .-..-+.++...+.+..+.+.+++..+|...++-. .+ ...-+.+-+.+ ++..+
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-------~pgfi~nRi~~~~~~ea- 203 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-------QPGYILNSLLVPFLSAA- 203 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-------CCCHhHHHHHHHHHHHH-
Confidence 4 12233556777888999999999999996422110 01 11223332222 32222
Q ss_pred HHHHHcCC-CHHHHHHHH---HHHHHHHHHHHHHHhcHHHHHhcc
Q 014834 322 RRFTENGM-SEDLAYKNT---VECITGIISKIISTQGMLAVYNSF 362 (417)
Q Consensus 322 d~~v~~Gl-~~e~A~~~~---~q~~~~g~~~li~e~G~~~l~~~v 362 (417)
-.+++.|+ ++++--+.. ...-. |--+++-..|++.+++..
T Consensus 204 ~~l~~~g~a~~~~iD~a~~~~~g~~~-Gp~~~~D~~Gld~~~~~~ 247 (287)
T PRK08293 204 LALWAKGVADPETIDKTWMIATGAPM-GPFGILDIVGLDTAYNIT 247 (287)
T ss_pred HHHHHcCCCCHHHHHHHHHhccCCCc-CHHHHHHHhchHHHHHHH
Confidence 23467775 465443322 12122 555667777776555444
No 53
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.33 E-value=1.1e-11 Score=124.03 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=116.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--------CceecC--CCcCCHHhhcCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--------G~~~~~--~~~~s~~Ea~~~AD 180 (417)
++||+|||+|+||.++|.+|.+. |++|.+++|+.++ .+...+. |..... ....+++|+++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD 76 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGAD 76 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCC
Confidence 37999999999999999999999 9999988886433 2222222 311000 01457888899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-----hhhhhhccc-CCCCCccEEEeccCCCchhHHHHHhhccc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSIGL-DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~-----i~~~~~~~i-~~~~dv~VI~v~Pntpg~~vr~ly~~G~~ 253 (417)
+||+++|+....+++ +.++++.+|+ .+.|+. ...+.+... .....+ .++..|+.+...
T Consensus 77 ~Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 77 FAVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe-EEEECccHHHHH----------
Confidence 999999999766665 4456777654 667764 222221000 011122 456788776555
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccc---------hhhhchHHH---------
Q 014834 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER---------GILLGAVHG--------- 315 (417)
Q Consensus 254 ~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~---------t~L~G~~pA--------- 315 (417)
+.|.+.+.... ..+.+..+.+..++...|.. + ....|..+.. +.-+|.+.+
T Consensus 142 --~~~~~~~~~~~-~~~~~~~~~v~~ll~~~~~~-v-------~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~ 210 (328)
T PRK14618 142 --ARFLPAATVVA-SPEPGLARRVQAAFSGPSFR-V-------YTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKA 210 (328)
T ss_pred --HcCCCeEEEEE-eCCHHHHHHHHHHhCCCcEE-E-------EecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 34443322221 23557788888999888753 1 1222333322 111344433
Q ss_pred -----HHHHHHHHHHHcCCCHHHHHHHH
Q 014834 316 -----IVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 316 -----~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
.+.-+...+.+.|++++..+..+
T Consensus 211 ~~~~~~~~E~~~la~~~G~~~~~~~~~~ 238 (328)
T PRK14618 211 ALITRGLREMVRFGVALGAEEATFYGLS 238 (328)
T ss_pred HHHHHHHHHHHHHHHHhCCCccchhcCc
Confidence 12235556678899998888763
No 54
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.33 E-value=5.7e-11 Score=116.78 Aligned_cols=193 Identities=17% Similarity=0.147 Sum_probs=122.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~ 192 (417)
||||||+|+||.++|.+|.+. |++|++++|+.+ ..+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGPE-VADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 999988877643 455666677754 568889999999999999987654
Q ss_pred -HHH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 193 -~Vl---~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
.++ +.+.+.+++|++|++.+..... .+.+ ....+++.++- +|-. +... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEEe-
Confidence 455 3477888999999887766542 2222 01123566665 5632 2111 111 23333233
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhh-chHHH-HHHH---HHHHHHHcCCCHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILL-GAVHG-IVES---LFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~-G~~pA-~iea---~~d~~v~~Gl~~e~A~~~~~ 339 (417)
.. +++..+.+..++..+|.. ++..- .... ++.+-++ +...+ .+++ ++..+.+.|+++++.++..-
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g---~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVG---GNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 33 468889999999999964 21110 0000 1111122 22222 2333 44556789999998886443
No 55
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.32 E-value=4.5e-11 Score=117.73 Aligned_cols=196 Identities=17% Similarity=0.104 Sum_probs=121.8
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHH
Q 014834 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~V 194 (417)
|||+|+||.+||++|.+. |++|.+++|+.++ .+...+.|... ..++.++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPDA-VEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 9999988877543 55566678764 5688999999999999999855 4678
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 195 l---~eI~~~lk~gaiLi~a~G~~i~~~~~~-~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
+ +++.+.+++|++|++++++........ ......+++++- +|-.-+. ...+.| -..+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd-aPv~Gg~---~~a~~g-------~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD-APVSGGV---GGARAG-------TLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-CCCCCCH---HHHhhC-------cEEEEE-CC--C
Confidence 7 578889999999999988864322110 011124566664 3533222 223333 333222 33 3
Q ss_pred HHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 271 GRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
.+..+.+..++..+|... +..- ...-...++.. ...+.+...++.| ++..+.+.|++++..+....
T Consensus 136 ~~~~~~~~~~l~~~g~~~-~~~g~~g~g~~~Kl~~-n~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNI-VHCGDHGAGQAAKICN-NMLLGISMIGTAE-AMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHHHHHhcCCe-EeeCCCCHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHh
Confidence 477888999999999742 1110 00000111111 1111111222233 33456899999998876433
No 56
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.29 E-value=8.2e-12 Score=110.21 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=72.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||+|||.|+.|.++++.|.+. |++|...+.+...+.+++.+ .+-. ...+..|+++++|+|||+|||..
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~~~~~----~~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAFIGAG----AILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S-CCH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccccccc----cccccccccccCCEEEEEechHH
Confidence 6999999999999999999999 99875433332334444433 2222 25678899999999999999999
Q ss_pred HHHHHHHHHhc--CCCCcEEEEecCch-hhhhhhcccCCCCCccEEEecc
Q 014834 191 QADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 191 ~~~Vl~eI~~~--lk~gaiLi~a~G~~-i~~~~~~~i~~~~dv~VI~v~P 237 (417)
+.++.++|... .++|++|++++|-. ..-++- .-..+.-+..+||
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 99999999987 89999999999963 222211 0013445666776
No 57
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.29 E-value=8.1e-11 Score=124.71 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=104.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCc---CCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~---ADIViL 184 (417)
+.+|||||+|+||.+||+||.+. |++|.|++|+.++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999986655444332 24320 0014688888876 999999
Q ss_pred ccCCchHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
++|+.... +|++.+.+.+++|++|++.+-.... ...+ ..-.+++.++ -+|-.=+... =+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fl-dapVSGG~~g---A~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYL-GMGVSGGEEG---AR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-eCCCcCCHHH---hc-------CCC-
Confidence 99987764 6888899999999999988755321 1111 1113456655 3452222220 01 344
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
+ +-+.. +.++.+.++.++..+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 44455 45799999999999995
No 58
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.28 E-value=1.5e-10 Score=113.92 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+++|||||+|.||.++|++|.+. |++|++++++.+ ..+.+.+.|... +.+.+|+++++|+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNPE-AVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 999887776543 345556667664 5678899999999999999876
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl---~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
.. .++ +++.+.+++|++|++++.+... .+.+ . ...++++++- +|-.-+.. .-. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~d-~pv~g~~~---~a~-------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEMLD-APVSGGEP---KAI-------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEEE-cCCCCCHH---HHh-------hCcEEEE
Confidence 54 455 3578889999999988877543 2222 0 1112444432 24221111 001 2333323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
. .. +.+..+.+..++..+|... +..- ...-....+. ....+.+. .+++--++..+.+.|+++++.++..
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~~-~~~g~~g~a~~~Kl~-~n~~~~~~-~~~~~Ea~~l~~~~Gi~~~~~~~~l 207 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGSV-VHTGDIGAGNVTKLA-NQVIVALN-IAAMSEALVLATKAGVNPDLVYQAI 207 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCCe-EEeCCcCHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 4678899999999999741 1110 0000000000 01111111 1223334566678999999877543
No 59
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.28 E-value=1.6e-10 Score=114.70 Aligned_cols=147 Identities=18% Similarity=0.129 Sum_probs=104.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~---ADIViLavpd 188 (417)
+||||||+|+||.+||++|.+. |++|.+++++.++ .+.+.+.|+.. ..+++|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~~-~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPEA-VEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHHH-HHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999999 9999888877544 45556678775 5678888875 6999999999
Q ss_pred c-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. ...++++.+.+.+++|+++++++.... ..+.+ ..-..++.++- +|..=+... =+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-eEE-
Confidence 8 557888889999999998887765432 11211 11134667774 674433221 11 354 323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
+.. +.+..+.+..++..+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 343 45788999999999997
No 60
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.27 E-value=1.3e-10 Score=114.38 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=108.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-----------HcCc-------------eecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGF-------------TEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-----------~~G~-------------~~~~ 166 (417)
++||+|||+|.||.++|.+|..+ |++|++++++.+. .+.+. +.|. ..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 74 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSADR-LEAGLATINGNLARQVAKGKISEEARAAALARIST-- 74 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe--
Confidence 48999999999999999999999 9999988876432 22221 1232 21
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
..++ +.+++||+||.++|...+ ..++.+|.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+.
T Consensus 75 --~~~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~ 148 (292)
T PRK07530 75 --ATDL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPV 148 (292)
T ss_pred --eCCH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCccc
Confidence 3455 457899999999998644 468888999999999875 888888766655 2223346888888777665
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. .++ - +.++...+.+..+.+..++..+|..
T Consensus 149 ~------------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 149 M------------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred C------------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2 223 3 4456667889999999999999964
No 61
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.25 E-value=3.5e-10 Score=119.37 Aligned_cols=151 Identities=14% Similarity=0.084 Sum_probs=102.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcC---cCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~---~ADIViL 184 (417)
|.+|||||+|+||.+||+||.++ |++|.+++|+.++..+.... .|... ..+.+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999998875553333221 25221 11568888886 5899999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCc
Q 014834 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~~~-~~Vl~eI~~~lk~gaiLi~a~G~~----i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv 259 (417)
++||... .++++++.++|++|++|++.+-.. .....+ ...+++.++ -+|-.=+.. .-+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHH---HHh-------cCC
Confidence 9777654 679999999999999999876532 111111 223466655 334221211 111 243
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+ +-+.. +.++.+.++.++..+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44455 458999999999999863
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=3.6e-10 Score=113.94 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcCceecC-----CCcCCHHh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN-----GTLGDIYE 174 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~~-----~~~~s~~E 174 (417)
++||+|||+|.||.+||..+..+ |++|.++++..+. .+. ..+.|..... ..+.++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 9999988876432 111 1112221100 11457889
Q ss_pred hcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhc
Q 014834 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
++++||+|+-++|..... +++.+|.+.++++++|. -++++.+..+.+ .....-+++..||=-|.+.
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~-------- 148 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYL-------- 148 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCcccc--------
Confidence 999999999999977653 58889999999999765 455776655554 2233347999999888876
Q ss_pred ccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 252 KEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
++.+ +.++...+.+..+.+.+++..+|..
T Consensus 149 -------~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 149 -------LPLVEVLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------CceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3331 3456677889999999999999964
No 63
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.24 E-value=2.3e-10 Score=120.64 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=101.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--C--ceecCCCcCCHHhhc---CcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G--~~~~~~~~~s~~Ea~---~~ADIViLa 185 (417)
+|||||+|+||.+||+||.+. |++|.+++|+.++..+...+. | +.. ..++++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999999998765544443331 2 333 45677766 468999999
Q ss_pred cCCc-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 186 ISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
+|+. ...++++++.+++++|++|++.+-... ..... ..-.+++.++-....+ +.. .-+ .|- +
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~--~l~~~gi~fvdapVsG-G~~---gA~-------~G~-~ 136 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK--ELKAKGILFVGSGVSG-GEE---GAR-------KGP-S 136 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH--HHHhcCCEEEcCCCCC-CHH---HHh-------cCC-c
Confidence 9984 556899999999999999998875321 11111 1224567766544333 221 111 343 3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+-+.. +.++.+.++.++..++..
T Consensus 137 -im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 137 -IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 33454 458999999999999864
No 64
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.23 E-value=5.1e-10 Score=113.19 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---------ceecC--CCcCCHHhhcCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G---------~~~~~--~~~~s~~Ea~~~A 179 (417)
++||+|||.|+||.++|..|.+. | +++++.++.. ..+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~~~-~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRSAE-TADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCCHH-HHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 47999999999999999999998 8 4555655432 233333322 11000 0134677889999
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCc-EEEEecCchh-------hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhc
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
|+||+++|++...+++++|.+++++++ +|++..|+.. ..+.+ .+|..-.+++..|+.+..+
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998887 4568889864 23433 2343334567889876655
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH
Q 014834 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG 315 (417)
Q Consensus 252 ~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA 315 (417)
+.|.++.+.+... +.+..+.+.+++..-| |+.....|+.+.+ ++|.+--
T Consensus 148 ----~~g~~t~~via~~-~~~~~~~v~~lf~~~~--------~~v~~s~Di~gve--~~~alkN 196 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQHLATRLSPLFRTRR--------FRVYTTDDVVGVE--MAGALKN 196 (341)
T ss_pred ----HcCCCeEEEEEeC-CHHHHHHHHHHhCCCC--------EEEEEcCchHHHH--HHHHHHH
Confidence 3566553333332 3333344444444333 2224455556544 5554433
No 65
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.17 E-value=3.9e-10 Score=107.10 Aligned_cols=91 Identities=25% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
||+|+|||.|+||.++|+.|.+. |++|+++.|+.+++.+. +.+.+... +..+++++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 99999998876655433 33444432 1468999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe
Q 014834 190 AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.+.+++.++...+. |++|+++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~ 92 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDA 92 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEec
Confidence 99999999998886 8888755
No 66
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.15 E-value=1.4e-09 Score=115.80 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=111.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcC-------------ceec
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G-------------~~~~ 165 (417)
.+++|||||+|.||..||.++..+ |++|++++++.+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 358999999999999999999999 9999988877543 222 23445 233
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
..++++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 456655 56999999999987764 4777888888899988 4788888766654 222223688888888887
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.+ ...- +..+...+.+..+.+..++..+|..
T Consensus 151 v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 151 LM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred cC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 72 1333 4446667789999999999999975
No 67
>PLN02858 fructose-bisphosphate aldolase
Probab=99.14 E-value=1.2e-09 Score=127.78 Aligned_cols=203 Identities=16% Similarity=0.117 Sum_probs=123.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+++|||||+|+||.+||.+|.+. |++|.+++++.++ .+...+.|... ..++.+++++||+||+++|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 48999999999999999999999 9999988887544 34445567654 5689999999999999999555
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEecCchhhh---hhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~~~lk~gaiLi~a~G~~i~~---~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+ .+|+. .+.+.+++|+++++++-+.... +.+.....+.++.++ =+|-..++.. - ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---h-------hcCCceEE
Confidence 4 57772 4788899999999887665332 211000001355544 3343333321 1 13332323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcee-ccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~i-ettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
+ .. +.+..+.+..++..+|....+ --..-.-...++..- .+.++.-+.+--++..+.++|++++..++....
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN--~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~ 534 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQ--LLAGVHIASAAEAMAFGARLGLNTRKLFDIISN 534 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 33 457899999999999964211 000000000011100 112221122222344567899999988875443
No 68
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.11 E-value=5.2e-09 Score=108.22 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=116.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH------------------HcC-ceecCCCcCCH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~------------------~~G-~~~~~~~~~s~ 172 (417)
+||+|||+|.||.++|.+|.+. |++|++++++..+...... +.| +.. ..+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~~ 70 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTDY 70 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECCH
Confidence 4899999999999999999999 9999877765433222111 123 332 4577
Q ss_pred HhhcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhccc-C---CCCCcc-EEE
Q 014834 173 YETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGL-D---FPKNIG-VIA 234 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i-~---~~~dv~-VI~ 234 (417)
.++++++|+||+++|+.. ..+++++|.+++++|++|++.+++... .+....+ . .....+ .+.
T Consensus 71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~ 150 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLA 150 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEE
Confidence 888999999999999653 456777899999999998888765321 1110000 0 111222 256
Q ss_pred eccCCC--chhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCceeccchhhhhhhhccccchhhhc
Q 014834 235 VCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYKSDIFGERGILLG 311 (417)
Q Consensus 235 v~Pntp--g~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG-~~~~iettf~~e~~~dl~ge~t~L~G 311 (417)
.+|... +..+.+.+. .+.++. . .+.+..+.+..++..++ ......++.. .-+.-.+-+.+ +..
T Consensus 151 ~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~Ae~~Kl~~N~-~~a 216 (411)
T TIGR03026 151 YNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSIE-TAEMIKLAENT-FRA 216 (411)
T ss_pred ECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCHH-HHHHHHHHHHH-HHH
Confidence 667432 222111111 123222 3 36789999999999997 3322222111 11111111111 112
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 312 AVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 312 ~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
.--+++--+...+.+.|+++++.+..
T Consensus 217 ~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 217 VKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 22234555667777888888877653
No 69
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.11 E-value=2.3e-10 Score=105.39 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=80.4
Q ss_pred hccccc---ccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 94 VRGGRD---LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 vr~g~~---~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
+++|+| .... ...+.| ++|||||+|++|..+|+.|+.. |++|+++++.... .......++. ..
T Consensus 18 ~~~~~W~~~~~~~-~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~ 83 (178)
T PF02826_consen 18 QRNGEWASRERFP-GRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YV 83 (178)
T ss_dssp HHTTBHHHHTTTT-BS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ES
T ss_pred HHcCCCCCCcCCC-ccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----ee
Confidence 477888 3333 489999 9999999999999999999988 9999888776432 2335566775 46
Q ss_pred CHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCc
Q 014834 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
+++|++++||+|++++|..... .++. +.+..||+|++++ .+-|-
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~ 130 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGE 130 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGG
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchh
Confidence 9999999999999999976553 4554 5788999999888 44453
No 70
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.10 E-value=3.4e-10 Score=114.43 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=82.0
Q ss_pred hhcccccccc-----c---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee
Q 014834 93 IVRGGRDLFK-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 93 ~vr~g~~~f~-----~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (417)
.+|+|+|... . ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.... ....+.|+.
T Consensus 125 ~~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~- 194 (333)
T PRK13243 125 FVRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE- 194 (333)
T ss_pred HHHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-
Confidence 4567888632 0 1267999 9999999999999999999988 9998877665322 233445654
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEe-cC
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a-~G 213 (417)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+.+ -|
T Consensus 195 ----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg 242 (333)
T PRK13243 195 ----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 (333)
T ss_pred ----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence 358999999999999999987654 5664 688999999998844 45
No 71
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.09 E-value=3.1e-09 Score=113.12 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----------HHHHcCceecC---------CCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----------EARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----------~A~~~G~~~~~---------~~~~s 171 (417)
++||+|||+|.||..||.++.++ |++|++++++.++..+ ...+.|..... ..+.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 58999999999999999999999 9999998887543211 12333421000 01456
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+++ +.+||+||.++|+.... .++.++.+..+++++|. -++++.+..+.. .+....+++.+|.=-|.+.+
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~---- 150 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM---- 150 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC----
Confidence 655 56999999999986653 57888888888888765 667777765443 23333478898988888773
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
...- +......+.+..+.+..++..+|..
T Consensus 151 ---------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ---------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ---------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4446677789999999999999975
No 72
>PLN02858 fructose-bisphosphate aldolase
Probab=99.09 E-value=2.3e-09 Score=125.51 Aligned_cols=196 Identities=15% Similarity=0.119 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
++|||||+|+||.+||+||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999999887544 44555678775 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCC--ccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 ~-~Vl---~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~-~~d--v~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. +|+ +.+.+.+++|+++++++-+......+....+ .++ +.++ =+|-.=+.. .-+.|+ .+. ++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l-DaPVsGg~~---~A~~G~------L~i-mv 142 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV-DAYVSKGMS---DLLNGK------LMI-IA 142 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE-EccCcCCHH---HHhcCC------eEE-EE
Confidence 4 676 3588889999999988766432221100011 123 4444 334221111 112221 333 22
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchh--h-hchHHH-HHHHHHH---HHHHcCCCHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGI--L-LGAVHG-IVESLFR---RFTENGMSEDLAYKN 337 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~--L-~G~~pA-~iea~~d---~~v~~Gl~~e~A~~~ 337 (417)
.. +.+..+.+..++..+|....+-. -+ .|.... | .+.+.+ .+.++.| .+.+.|++++..+..
T Consensus 143 -GG--~~~~~~~~~p~l~~~g~~i~~~~---G~-----~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 143 -SG--RSDAITRAQPFLSAMCQKLYTFE---GE-----IGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred -cC--CHHHHHHHHHHHHHhcCceEEec---CC-----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 44678999999999996411000 00 111111 1 112221 2233333 468999999988876
Q ss_pred HHH
Q 014834 338 TVE 340 (417)
Q Consensus 338 ~~q 340 (417)
...
T Consensus 212 l~~ 214 (1378)
T PLN02858 212 ISN 214 (1378)
T ss_pred Hhc
Confidence 543
No 73
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.08 E-value=8.8e-09 Score=105.63 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=142.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCChh----hHHHHHHc--------CceecCC--CcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAA--------GFTEENG--TLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~ViVg~r~~s~----s~~~A~~~--------G~~~~~~--~~~ 170 (417)
+||+|||.|++|.|+|..|.++ | ++|.++.|+..- ..+.-.+. |+...+. .+.
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 6899999999999999999988 6 688888776421 11111111 1111010 145
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHh--cCCCCcE-EEEecCchhhh---------hhhcccCCCCCccEEEeccC
Q 014834 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSI-LGLSHGFLLGH---------LQSIGLDFPKNIGVIAVCPK 238 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~--~lk~gai-Li~a~G~~i~~---------~~~~~i~~~~dv~VI~v~Pn 238 (417)
|+++++++||+|++++|++...++++++.+ +++++++ |+.+.|+.+.. +.+ .++.++ .+..-|+
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~-~~LsGPs 161 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPC-CALSGAN 161 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCe-EEEECCC
Confidence 788999999999999999999999999998 8887764 55888985321 111 122222 2355666
Q ss_pred CCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHH
Q 014834 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVE 318 (417)
Q Consensus 239 tpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~ie 318 (417)
.+..+. .|.++.+++... ..+.+..+...+... .|+-....|+.|.+ +||.+--++-
T Consensus 162 ~A~Eva------------~~~pt~~vias~----~~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNviA 218 (365)
T PTZ00345 162 VANDVA------------REEFSEATIGCE----DKDDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNIIA 218 (365)
T ss_pred HHHHHH------------cCCCcEEEEEeC----CHHHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHHHH
Confidence 655442 456554444332 234455555556555 33344566777776 6676655322
Q ss_pred H--HHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhccC--hhHHH
Q 014834 319 S--LFRRFTENGMSEDL-AYKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YPCME 383 (417)
Q Consensus 319 a--~~d~~v~~Gl~~e~-A~~~~~q~~~~g~~~li~----------e~G~~~l~~~vss~~~~~~~~~~~~~~--~~~~~ 383 (417)
- .+--+...|..-.- -+...+.||. -+++.+. -.|++.|.--|+|-....||..+.... ++..+
T Consensus 219 Ia~Gi~dGl~~G~N~kaalitrgl~Em~-~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~ 297 (365)
T PTZ00345 219 LAAGFCDGLGLGTNTKSAIIRIGLEEMK-LFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEE 297 (365)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHH
Confidence 2 22222233332222 2233444444 3333221 145566666666623356787655332 34444
Q ss_pred HHHHHHH-hhccChHH
Q 014834 384 ILYECYE-DVAAGSEI 398 (417)
Q Consensus 384 ~m~~~~~-~v~~g~~~ 398 (417)
++++++. .+..|-.+
T Consensus 298 ~~~~~~~~~~vEG~~t 313 (365)
T PTZ00345 298 IEAELLNGQKLQGTVT 313 (365)
T ss_pred HHHHhhCCcEechHHH
Confidence 5444322 34445554
No 74
>PRK07574 formate dehydrogenase; Provisional
Probab=99.07 E-value=6.8e-10 Score=114.49 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=84.9
Q ss_pred hhccccccccc---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 93 IVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~vr~g~~~f~~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
-+++|+|.... ....|.| ++|||||+|+||..+|+.|+.. |++|+++++... ..+...+.|+.. .
T Consensus 172 ~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~ 239 (385)
T PRK07574 172 QAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----H 239 (385)
T ss_pred HHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----c
Confidence 35778897432 2367999 9999999999999999999988 999987776532 223334556653 4
Q ss_pred CCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEe-cCc
Q 014834 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGF 214 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a-~G~ 214 (417)
.+++|++++||+|++++|..... .++. +.+..||+|++|+.. -|-
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 287 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGK 287 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCc
Confidence 68999999999999999987764 5775 688999999998844 453
No 75
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=9.6e-09 Score=102.25 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=66.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.++|+.|.+. |++|.+++|+.. .+++++++++|+||+++|+..+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECChHHH
Confidence 7899999999999999999999 999998887532 2577888999999999999888
Q ss_pred HHHHHHHHhc-CCCCcEEEEec-Cc
Q 014834 192 ADNYEKIFSC-MKPNSILGLSH-GF 214 (417)
Q Consensus 192 ~~Vl~eI~~~-lk~gaiLi~a~-G~ 214 (417)
.++++++.++ ++++++|+++. |+
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 8999888774 78888776544 44
No 76
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.06 E-value=8.4e-09 Score=102.13 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----------HHHHcCceecC---------CCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----------EARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----------~A~~~G~~~~~---------~~~~s 171 (417)
|+||||||+|.||..||..+... |++|+++++..+...+ .+.+.|..... ....+
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 78 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD 78 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC
Confidence 57999999999999999999999 9999988876443211 13333422000 01345
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcC-CCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~l-k~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
. +.+++||+||-++|..... +++.++.... +++++|. -++++.+..+.. ....| -+++.+|+-.|.+.+
T Consensus 79 ~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~-~~~~~--~r~~g~hf~~P~~~~--- 151 (286)
T PRK07819 79 L-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA-ATKRP--GRVLGLHFFNPVPVL--- 151 (286)
T ss_pred H-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh-hcCCC--ccEEEEecCCCcccC---
Confidence 6 5689999999999988764 5777888877 8899876 566666665554 22323 368999998887772
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCC
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSP 287 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~-alG~~ 287 (417)
+..- +.+....+.+..+.+..++. .+|..
T Consensus 152 ----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 152 ----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQ 181 (286)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 2333 45577788899999999988 59965
No 77
>PLN03139 formate dehydrogenase; Provisional
Probab=99.05 E-value=8.1e-10 Score=113.94 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=83.6
Q ss_pred hhcccccccc---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 93 IVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~vr~g~~~f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
.+++|+|... .....|.| ++|||||+|+||..+|+.|+.. |++|+++++.. ...+...+.|+.. .
T Consensus 179 ~~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~ 246 (386)
T PLN03139 179 QVVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----E 246 (386)
T ss_pred HHHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----c
Confidence 4577889742 12368999 9999999999999999999988 99998776643 2223344566653 4
Q ss_pred CCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.+++|++++||+|++++|..... .++. +++..||+|++|+.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 58999999999999999977664 5775 6889999999988554
No 78
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.05 E-value=1.1e-08 Score=100.20 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=73.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC-------CCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~-------~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|+||..+|..|.++ |++|.+..|+.+ ..+...+.|+...+ ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 4799999999999999999998 999988877543 34444455653200 113345555 89999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcE-EEEecCch
Q 014834 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~ 215 (417)
++|+....++++.+.+++.++++ |....|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 99999999999999999988764 55778886
No 79
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.05 E-value=7.9e-10 Score=99.91 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=70.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec----------CCCcCCHHhhcCcCCEE
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~----------~~~~~s~~Ea~~~ADIV 182 (417)
||+|||.|++|.++|.-|.+. |++|.++.|+.. ..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999998877643 3333332221100 00246789999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~ 214 (417)
++++|.+.+.+++++|.++++++++|+ .+.||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998766 55577
No 80
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.03 E-value=1.3e-08 Score=105.90 Aligned_cols=203 Identities=15% Similarity=0.085 Sum_probs=116.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh---------------
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea--------------- 175 (417)
++||+|||+|.||.++|.+|.+. |++|++++++..+ .+. ...|.... ....+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~~~-v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQHA-VDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCHHH-HHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 58999999999999999999999 9999877765333 332 33343210 01112222
Q ss_pred cCcCCEEEEccCCc----------hHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhhcccC--CC----CCcc-
Q 014834 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSIGLD--FP----KNIG- 231 (417)
Q Consensus 176 ~~~ADIViLavpd~----------~~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~----~~~~~i~--~~----~dv~- 231 (417)
+++||+||+|+|+. .+.++++.|.+++++|++|++.+.+... . +.+.... .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 34899999999973 5567778899999999999877655321 1 1111111 11 0112
Q ss_pred EEEecc--CCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh
Q 014834 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL 309 (417)
Q Consensus 232 VI~v~P--ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L 309 (417)
.+...| -.+|..+.+... .+-++. . .+.+..+.+..++..++....+.++. ..-+.-.+-+.+ +
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vvg--G-~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~ 218 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVIG--G-MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS-F 218 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEEE--e-CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-H
Confidence 244666 445555432221 233332 2 35688999999999998642222221 111111111111 1
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 310 LGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 310 ~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
...--+++.-++..+.+.|++.++..+.
T Consensus 219 ~a~~ia~~nE~~~lae~~GiD~~~v~~~ 246 (415)
T PRK11064 219 RDVNIAFANELSLICADQGINVWELIRL 246 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2222234555666677888888777653
No 81
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.03 E-value=1.4e-09 Score=110.01 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=77.8
Q ss_pred hcccccccc--cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 94 VRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 94 vr~g~~~f~--~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
+++|+|.+. .....|.| ++|||||+|+||.++|+.|+.. |++|+++++....... .... ..+
T Consensus 128 ~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~ 191 (330)
T PRK12480 128 VQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDS 191 (330)
T ss_pred HHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCC
Confidence 455654332 23478999 9999999999999999999988 9999877765332111 1111 357
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEE-EecCc
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi-~a~G~ 214 (417)
+++++++||+|++++|.... ..++ +++++.|++|++|+ .+-|-
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 89999999999999998775 3444 46889999999887 45564
No 82
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=1.8e-08 Score=100.63 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=71.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--Cce------ecCC--CcCCHHhhc-CcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~------~~~~--~~~s~~Ea~-~~AD 180 (417)
+||+|||.|+||.++|..|.++ |++|.++.|+... .+.-.+. +.. ..+. ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHTT-FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHHH-HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 9999888775332 2222221 111 0000 124566665 5899
Q ss_pred EEEEccCCchHHHHHHHHHh-cCCCCc-EEEEecCch
Q 014834 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~-~lk~ga-iLi~a~G~~ 215 (417)
+||++||+....++++++.+ ++++++ +|++..|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 566888883
No 83
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.01 E-value=7.9e-10 Score=111.62 Aligned_cols=150 Identities=23% Similarity=0.233 Sum_probs=104.2
Q ss_pred hccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 94 VRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 94 vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
.|+|.|.... ...+|.| ||+||||+|++|..+|+.|+.. |++|+.+++..++ +.+...+... ..++
T Consensus 125 ~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~L 191 (324)
T COG0111 125 QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSL 191 (324)
T ss_pred HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccH
Confidence 4889998722 2358999 9999999999999999999988 9999877664333 2344455553 5689
Q ss_pred HhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~-G~~------i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
++++++||+|++++|-... ..++. +.+..||+|++++-++ |-. +..+++ +-.-..-+||.-..|..+.+.
T Consensus 192 d~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~EPl~~~~p 270 (324)
T COG0111 192 DELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEEEPLPADSP 270 (324)
T ss_pred HHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCCCCCCCCCh
Confidence 9999999999999997665 45675 5788899999888554 431 223332 212223567777777666533
Q ss_pred HHHHHhhcccccCCCceEEEeecCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~d 268 (417)
+|.. -+.+++||--
T Consensus 271 ---L~~~--------pnV~~TPHia 284 (324)
T COG0111 271 ---LWDL--------PNVILTPHIG 284 (324)
T ss_pred ---hhcC--------CCeEECCccc
Confidence 3332 2455677763
No 84
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.00 E-value=1.4e-09 Score=109.96 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=76.8
Q ss_pred hccccccccc--chhhccCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 94 VRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 vr~g~~~f~~--~~~~l~gmkkIgIIG~G~mG~AiA~~L-r~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
+|+|+|.+.. ....|.| ++|||||+|+||.++|+.| +.. |++|+++++..... ...++.. ..
T Consensus 128 ~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~ 192 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KD 192 (332)
T ss_pred HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cC
Confidence 4566664332 2368999 9999999999999999999 445 88887665543221 1123332 35
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHH--HHHHhcCCCCcEEEEe-cCc
Q 014834 171 DIYETISGSDLVLLLISDAAQADNY--EKIFSCMKPNSILGLS-HGF 214 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl--~eI~~~lk~gaiLi~a-~G~ 214 (417)
++++++++||+|++++|.......+ .+..+.||+|++|+.+ -|.
T Consensus 193 ~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred CHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 8999999999999999988776544 3578899999988844 454
No 85
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.00 E-value=1.5e-09 Score=108.64 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=79.5
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
-+|+|+|..... ..|.| ++|||||+|+||.++|+.|+.. |++|+++++.... .|+.. ...++
T Consensus 106 ~~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l 167 (303)
T PRK06436 106 NMKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEP 167 (303)
T ss_pred HHHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCH
Confidence 457788986544 78999 9999999999999999988877 9999877764211 23321 13579
Q ss_pred HhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+|++++||+|++++|..... .++. +.+..||+|++++.++
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 99999999999999987764 4665 5888899999988443
No 86
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=108.23 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=102.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
++|||||+|+||.+|+.||.+. |+.|+|++|..++ .+..++.|..+ ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7999999999999999999999 9999999987555 45556678876 67899999999999999998877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 192 ~-~Vl~---eI~~~lk~gaiL-i~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+ +++. .+...+++|... ++++-+... .+.+ .+. .++..+| =+| ..--+..-+ .|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~v-DAP---VSGg~~~A~-------~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFV-DAP---VSGGVKGAE-------EGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEE-ecc---ccCCchhhh-------cCeEEEE
Confidence 5 6775 367777888866 677765321 2222 111 2333444 223 221111112 3444434
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 014834 264 AVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~ 287 (417)
+ .. ++...+.+..++..+|..
T Consensus 172 a-gG--de~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-GG--DEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-cC--cHHHHHHHHHHHHHhcce
Confidence 4 32 456777788889999864
No 87
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=108.99 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=96.3
Q ss_pred chhhhcccccccc-----cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee
Q 014834 90 DEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 90 ~e~~vr~g~~~f~-----~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (417)
-+.-+|.|.|... .....+.| ||+||||+|.+|.++|+.++.. |++|.+++++.. .+...+.++.
T Consensus 121 ~~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~- 190 (324)
T COG1052 121 GDRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR- 190 (324)
T ss_pred HHHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce-
Confidence 3456788888775 33468999 9999999999999999999966 999987777643 2333344455
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~-G~~------i~~~~~~~i~~~~dv~VI~v 235 (417)
..+++|++++||+|+|.+|..... .++. +.+..||+|.+|+-.+ |-. +.-+++ +..-....||.--
T Consensus 191 ----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglDV~e~ 265 (324)
T COG1052 191 ----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLDVFEN 265 (324)
T ss_pred ----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEeeecCC
Confidence 346999999999999999988775 5665 6888999999988443 432 222222 2222335677766
Q ss_pred ccCC
Q 014834 236 CPKG 239 (417)
Q Consensus 236 ~Pnt 239 (417)
.|.-
T Consensus 266 Ep~~ 269 (324)
T COG1052 266 EPAL 269 (324)
T ss_pred CCCC
Confidence 6653
No 88
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=98.97 E-value=1.6e-09 Score=92.76 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=60.3
Q ss_pred hhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 298 YKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 298 ~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
++|+.|+..++++||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.+++. ..|++.|++|.-
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~-G~a~ll~~~~~~~~~l~~~v~tPgG 75 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFI-GAAKLLEESGRSPAELRDEVTTPGG 75 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHCSS-HHHHHHHHS-TTS
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHccCCCHHHHhhhccCCCC
Confidence 357789999999999999 4899999999999999999999999999 99999999886 999999999953
No 89
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.97 E-value=2.5e-09 Score=107.92 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=81.9
Q ss_pred hhhhccccccccc----chhhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 91 EFIVRGGRDLFKL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 91 e~~vr~g~~~f~~----~~~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
...+|+|+|.... ....|.| |+|||||+|++|..+|+.++ .. |++|+++++... .+.....|..
T Consensus 122 ~~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~-- 190 (323)
T PRK15409 122 AERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR-- 190 (323)
T ss_pred HHHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE--
Confidence 3456788996431 1368999 99999999999999999987 55 889876655422 2223345655
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecC
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G 213 (417)
..+++|++++||+|++++|-.... .++. +.+..||||++++ .+=|
T Consensus 191 ---~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 191 ---YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred ---ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCc
Confidence 458999999999999999977664 5665 6888999999988 4445
No 90
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.96 E-value=2e-09 Score=108.02 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=79.1
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
..++|+|..... ..+.| ++|||||+|+||..+|+.|+.. |++|+++++...+ . .++.. .....++
T Consensus 120 ~~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l 184 (312)
T PRK15469 120 LQNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREEL 184 (312)
T ss_pred HHHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccH
Confidence 356778975433 57899 9999999999999999999988 9999877664322 1 12221 0113578
Q ss_pred HhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
++++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 185 ~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 185 SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 99999999999999987764 5665 5888999999988554
No 91
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.96 E-value=2.1e-09 Score=114.88 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=83.3
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. +.+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCC
Confidence 46778897432 1368999 9999999999999999999988 99988776542 234455667653 357
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 99999999999999997765 45664 6788999999988554
No 92
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.95 E-value=3.7e-08 Score=96.11 Aligned_cols=225 Identities=14% Similarity=0.235 Sum_probs=154.7
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHcCceecC
Q 014834 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~G~~~~~ 166 (417)
|+||+|.|+||| |..||-.+... |++|++...+ +...|++-++.|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 478999999987 55677766666 9999887543 335689999999987
Q ss_pred CCcCCHHhhcCcCCEEEEccCCc-hHHHHHHHHHhcCCCCcEEEEec---CchhhhhhhcccCC-CCCccEEEeccCC-C
Q 014834 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLSH---GFLLGHLQSIGLDF-PKNIGVIAVCPKG-M 240 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~-~~~~Vl~eI~~~lk~gaiLi~a~---G~~i~~~~~~~i~~-~~dv~VI~v~Pnt-p 240 (417)
+.|-.++++.+++.+|-||-. ..-.+.++|.+++..|++|.-.+ -+.+.+--+..+.. ++|+.|...||-+ |
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 677789999999999999977 55689999999999999987433 33332222223343 3788888889854 6
Q ss_pred chhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-ceeccchhhhhhhhccccchhhhchHHH--HH
Q 014834 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYKSDIFGERGILLGAVHG--IV 317 (417)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA--~i 317 (417)
|+.....|.-+ |++-.. -.-+|+++.+++..|+++.|.. +++. -|+....+ =+|++.. .+
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~Va-Dmg~lvtav~l 213 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVA-DMGVLVTAVAL 213 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhh-hhHHHHHHHHH
Confidence 66654455544 222221 1235789999999999999975 2222 22332222 2333322 23
Q ss_pred HHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 318 ESLFRRF----TENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 318 ea~~d~~----v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
.+..|.+ .-.|-|.|+--+.+..++. .++-++-.+|++.|.....
T Consensus 214 ~gvldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 214 SGVLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 3333332 3579999998888887777 9999999999988776544
No 93
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.95 E-value=5.7e-08 Score=98.91 Aligned_cols=244 Identities=14% Similarity=0.152 Sum_probs=133.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------cEEEEEecCC----hhhHHHHHH--------cCceecCC--CcC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG----SRSFAEARA--------AGFTEENG--TLG 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G--------~~ViVg~r~~----s~s~~~A~~--------~G~~~~~~--~~~ 170 (417)
||+|||.|++|.++|..|.++ | ++|.++.|.. +...+.-.+ -|+...+. .+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 8998887732 221111111 12211011 135
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcE-EEEecCchhh---------hhhhcccCCCCCccEEEeccCCC
Q 014834 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSIGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~---------~~~~~~i~~~~dv~VI~v~Pntp 240 (417)
++++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++.++ .+..-|+.+
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~-~~lsGP~~A 150 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPC-GVLSGANLA 150 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCe-EEeeCcchH
Confidence 7889999999999999999999999999999998875 5588888543 1111 122222 234555554
Q ss_pred chhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHH
Q 014834 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~~liav~~-dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea 319 (417)
..+ . +|.++-+++.. +.+ ...+.++.+...+-.. .|+-....|..|.+ |||.+--++-.
T Consensus 151 ~Ev-----a-------~~~pt~~~ia~~~~~-~~~~~a~~~~~lf~~~-----~frv~~s~Dv~GvE--l~galKNv~AI 210 (342)
T TIGR03376 151 NEV-----A-------KEKFSETTVGYRDPA-DFDVDARVLKALFHRP-----YFRVNVVDDVAGVE--IAGALKNVVAI 210 (342)
T ss_pred HHH-----H-------cCCCceEEEEeCCCc-chHHHHHHHHHHhCCC-----CEEEEEcCCcccch--hhHHHHHHHHH
Confidence 444 2 34544333332 211 1133344455555444 33334556777776 67766554322
Q ss_pred HHHHH--HHcCCCHHHH-HHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhccChhHHHHHH
Q 014834 320 LFRRF--TENGMSEDLA-YKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILY 386 (417)
Q Consensus 320 ~~d~~--v~~Gl~~e~A-~~~~~q~~~~g~~~li~----------e~G~~~l~~~vss~~~~~~~~~~~~~~~~~~~~m~ 386 (417)
+.=.. ...|..-.-| +...+.+|. -+++.+. -.|++.|.--|++-....||..+........++++
T Consensus 211 a~Gi~~Gl~~g~N~~aalitrgl~Em~-~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~ 289 (342)
T TIGR03376 211 AAGFVDGLGWGDNAKAAVMRRGLLEMI-KFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEK 289 (342)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHH
Confidence 22111 2223222111 222334444 3333321 23446666666652335677765431233333444
Q ss_pred H
Q 014834 387 E 387 (417)
Q Consensus 387 ~ 387 (417)
+
T Consensus 290 ~ 290 (342)
T TIGR03376 290 E 290 (342)
T ss_pred h
Confidence 3
No 94
>PLN02928 oxidoreductase family protein
Probab=98.93 E-value=3e-09 Score=108.28 Aligned_cols=162 Identities=22% Similarity=0.199 Sum_probs=101.3
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--------cee
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTE 164 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------~~~ 164 (417)
.+++|+|....+ ..|.| |+|||||+|+||..+|+.|+.. |++|+++++...+... ...+ +..
T Consensus 143 ~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~ 212 (347)
T PLN02928 143 SLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPE--DGLLIPNGDVDDLVD 212 (347)
T ss_pred HHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhh--hhhcccccccccccc
Confidence 456788865444 68999 9999999999999999999988 9999877664222111 1000 000
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEEEe
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a-~G~~i------~~~~~~~i~~~~dv~VI~v 235 (417)
......+++|++++||+|++++|..... .++. +.+..||+|++|+.+ -|-.+ .-+++ +......+||...
T Consensus 213 ~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~ 291 (347)
T PLN02928 213 EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWS 291 (347)
T ss_pred ccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCC
Confidence 0012458999999999999999976654 5665 688899999998844 45322 22222 1111224567666
Q ss_pred ccCCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014834 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 236 ~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~ 276 (417)
.|..+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 292 EP~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 292 EPFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 66433322 2221 3567888863 34444333
No 95
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.93 E-value=5.9e-08 Score=97.95 Aligned_cols=173 Identities=18% Similarity=0.254 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH------c-CceecC--CCcCCHHhhcCcCCE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------A-GFTEEN--GTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~------~-G~~~~~--~~~~s~~Ea~~~ADI 181 (417)
++||+|||.|+.|.|+|+-|.++ |++|.++.|+.+-..+.-.. . |+...+ ..+.|+++++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 47999999999999999999999 99999888763321111110 0 221101 125679999999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-------hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhccc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~ 253 (417)
|++++|-+...++++++.++++++++++ .+-|+.. ..+++ .+|.+.-++..-||-...+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV---------- 141 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV---------- 141 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH----------
Confidence 9999999999999999999998888655 6667732 22332 3444434556666654444
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH
Q 014834 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG 315 (417)
Q Consensus 254 ~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA 315 (417)
.+|.|+-+++.... .+..+ .+...+=++ .|+..+..|..|.+ ++|.+--
T Consensus 142 --a~g~pta~~vas~d-~~~a~---~v~~~f~~~-----~Frvy~~~Dv~Gve--igGAlKN 190 (329)
T COG0240 142 --AQGLPTAVVVASND-QEAAE---KVQALFSSP-----YFRVYTSTDVIGVE--IGGALKN 190 (329)
T ss_pred --hcCCCcEEEEecCC-HHHHH---HHHHHhCCC-----cEEEEecCchhhhH--HHHHHHH
Confidence 35687766665532 23333 344444444 33334556667665 5555544
No 96
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.93 E-value=2.9e-09 Score=113.83 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=83.5
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ....|.| |+|||||+|+||..+|+.|+.. |++|+++++... .+.+.+.|+.. .+
T Consensus 122 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~-----~~ 187 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL-----VS 187 (526)
T ss_pred HHHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE-----Ec
Confidence 45778896432 1367999 9999999999999999999988 999987766432 33455677763 48
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 188 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 188 LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 99999999999999998765 45674 6889999999988554
No 97
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.92 E-value=2.1e-08 Score=101.10 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=117.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ -...++.+|..- ...+.+++ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99988888865 345566666542 34455544 57999999999888
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~eI~~~-lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
+..++...-+. +|.|+++++.-.++ ..-+++ .+|+|+|++.+||.---..+. ..++|.+.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksvn--------h~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSVN--------HEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcCC--------CccccCceEEEEe
Confidence 88888766554 88999887655543 333444 889999999999953211111 1157888866544
Q ss_pred CCC----CHHHHHHHHHHHHHhCCCceeccchhhhhh
Q 014834 267 QDV----DGRATNVALGWSVALGSPFTFATTLEQEYK 299 (417)
Q Consensus 267 ~dv----sgea~e~a~~L~~alG~~~~iettf~~e~~ 299 (417)
.-- ..+.-|...+++.-.|+. .++.+.+++++
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDk 225 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDK 225 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeecccc
Confidence 321 257889999999999985 44445455544
No 98
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.91 E-value=8.1e-08 Score=94.30 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=74.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC---------CcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~---------~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.||..+|..|.++ |++|.+..| .+ ..+...+.|+..... .+.+.+++.+.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 999988877 33 344445556542110 123556667899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCch
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~ 215 (417)
|+++|..+..++++++.+++.++++|+ +..|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 999999999999999999998887654 667875
No 99
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.89 E-value=5.6e-08 Score=90.18 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=99.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-----------HcC-------------ceecCCC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAG-------------FTEENGT 168 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-----------~~G-------------~~~~~~~ 168 (417)
||+|||.|.||..+|..+... |++|.+++++.+. .+.++ +.| +..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---- 69 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPEA-LERARKRIERLLDRLVRKGRLSQEEADAALARISF---- 69 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHHH-HHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE----
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChHH-HHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc----
Confidence 799999999999999999999 9999988876431 11111 111 121
Q ss_pred cCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
..++++++ +||+||=++|.... .++|.++.+.+.++++|. -++++++..+.. ..+..-+++.+|+-.|.+.++
T Consensus 70 ~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 70 TTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP 145 (180)
T ss_dssp ESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT--
T ss_pred ccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc
Confidence 46788888 99999999997665 369999999999999875 778898887765 333444799999988876521
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+-= +.++...+.+..+.+.+++..+|..
T Consensus 146 -------------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 -------------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp -------------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 4457778889999999999999864
No 100
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.89 E-value=4.5e-09 Score=105.40 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=102.1
Q ss_pred hhccccccccc-------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 93 IVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~vr~g~~~f~~-------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
.+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++.... ...++.
T Consensus 121 ~~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~-- 186 (311)
T PRK08410 121 YVKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE-- 186 (311)
T ss_pred HHHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce--
Confidence 36788886431 1258999 9999999999999999999877 9998876654211 123454
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhhcccCCCCCccEEEec
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSIGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~~------i~~~~~~~i~~~~dv~VI~v~ 236 (417)
..+++|++++||+|++++|-.... .++. +.+..||||++|+ .+-|-. +..+++ +-.. ..+||..-.
T Consensus 187 ---~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-AaLDV~~~E 261 (311)
T PRK08410 187 ---RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AGLDVLEKE 261 (311)
T ss_pred ---eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EEEecCCCC
Confidence 458999999999999999976654 5665 6888999999988 555632 223332 1111 345666666
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a 277 (417)
|..+.+. ++.-- .=-|.+++||-. .+.++.+..
T Consensus 262 P~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 262 PMEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 6443332 12100 001577888853 344544443
No 101
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.89 E-value=4.2e-08 Score=98.18 Aligned_cols=97 Identities=28% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC--C-----------CcCCHHhhcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~--~-----------~~~s~~Ea~~ 177 (417)
|+||+|||+|.||.++|..|.++ |++|.+.+|. +..+...+.|+...+ + ...+. ++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47899999999999999999999 9999888774 223444555654211 0 01233 5678
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i 216 (417)
.+|+||+++|+....++++++.++++++++|+ ...|+..
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 99999999999988899999999999988765 5567753
No 102
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.83 E-value=1.3e-08 Score=103.05 Aligned_cols=137 Identities=23% Similarity=0.261 Sum_probs=95.4
Q ss_pred hcccchhhhcccccccccc---hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCc
Q 014834 86 LANRDEFIVRGGRDLFKLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 86 ~~~~~e~~vr~g~~~f~~~---~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~ 162 (417)
|-+-+|. +++|+|.+..+ ...++| |+|||+|+|++|..+|++|... |..+.+..|. ....+.+.+.+.
T Consensus 136 ~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYYA 206 (336)
T ss_pred hhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhcc
Confidence 5555554 45666733221 388999 9999999999999999999987 8545444454 344556666665
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCchhh------hhhhcccCCCCCccEE
Q 014834 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLLG------HLQSIGLDFPKNIGVI 233 (417)
Q Consensus 163 ~~~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~~i~------~~~~~~i~~~~dv~VI 233 (417)
. ..+.+|.+.++|+|++++|..... .+++ ++..+||+|.+|+ .+=|--+. .+.+ +.......||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCccccccccc
Confidence 4 358999999999999999988875 6776 6899999999887 44453221 1211 22233456777
Q ss_pred Eecc
Q 014834 234 AVCP 237 (417)
Q Consensus 234 ~v~P 237 (417)
--.|
T Consensus 281 ~~EP 284 (336)
T KOG0069|consen 281 EPEP 284 (336)
T ss_pred CCCC
Confidence 7667
No 103
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.80 E-value=1.4e-08 Score=102.11 Aligned_cols=103 Identities=21% Similarity=0.200 Sum_probs=78.3
Q ss_pred hhccccccccc-------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 93 IVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~vr~g~~~f~~-------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
-+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++.... ..+.
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 45788886432 1257999 9999999999999999999877 9998766654211 1122
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCc
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
..+++|++++||+|++++|-.... .++. +.+..||+|++|+ .+-|-
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGG 236 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcc
Confidence 347999999999999999976654 5665 6888999999988 44453
No 104
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.80 E-value=1.8e-08 Score=104.67 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++... ....++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee----cCC
Confidence 35778897532 2378999 9999999999999999999987 999876665321 11123332 458
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEE-EecCc
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+ .+-|-
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 99999999999999997665 45665 5888999999988 44453
No 105
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.76 E-value=2.2e-08 Score=100.59 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=99.4
Q ss_pred hhccccccccc-------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 93 IVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~vr~g~~~f~~-------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
.+++|+|.... ....+.| |+|||||+|++|..+|+.++.. |++|+.+++.... .....
T Consensus 123 ~~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-- 187 (314)
T PRK06932 123 DQLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-- 187 (314)
T ss_pred HHHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc--
Confidence 35678886321 2258999 9999999999999999999877 9998765543211 11111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCchh------hhhhhcccCCCCCccEEEec
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~~i------~~~~~~~i~~~~dv~VI~v~ 236 (417)
..+++|++++||+|++++|-.... .++. +.+..||+|++|+ .+-|-.+ ..+++ +......+||....
T Consensus 188 ---~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaLDV~~~E 263 (314)
T PRK06932 188 ---YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAALDVLVKE 263 (314)
T ss_pred ---cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEEecCCCC
Confidence 347999999999999999976654 5665 6888999999988 5556422 22222 11112245676666
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a 277 (417)
|..+.....+.+.+- -+.+++||-. .+.++.+..
T Consensus 264 P~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~ 298 (314)
T PRK06932 264 PPEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTL 298 (314)
T ss_pred CCCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHH
Confidence 744333221111110 2566777753 344444443
No 106
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.74 E-value=8.3e-07 Score=83.95 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=92.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||. |.||..++.-++++ |+.|. +++||+||||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 48999998 99999999999999 98874 257999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
..++++++. .+|++.++++-...+ ...++|..||.. |+. .++. |-.-+++++ ....+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMf-Gp~------~a~~--~lf~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLF-GPM------SYND--GVHRTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCC-CCC------cCcc--cccceEEEE-CCCCC
Confidence 999998764 268899998753221 134799999954 432 1110 101244443 45556
Q ss_pred HHHHHHHHHHHHHhCCCceeccchhhhhhh
Q 014834 271 GRATNVALGWSVALGSPFTFATTLEQEYKS 300 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iettf~~e~~~ 300 (417)
.++.+.+++++. | .++++++.++|++.
T Consensus 101 ~~~~~~~~~l~~--G-~~~~~~t~eeHD~~ 127 (197)
T PRK06444 101 DNYLNEINEMFR--G-YHFVEMTADEHDLL 127 (197)
T ss_pred HHHHHHHHHHHc--C-CEEEEeCHHHHHHH
Confidence 677888999988 6 47888888888774
No 107
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.73 E-value=7.1e-07 Score=98.87 Aligned_cols=155 Identities=10% Similarity=0.102 Sum_probs=111.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh----------HHHHHHcCceecC-------C--Cc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----------FAEARAAGFTEEN-------G--TL 169 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s----------~~~A~~~G~~~~~-------~--~~ 169 (417)
..++||+|||.|.||..||..+..+ |++|++.+.+.+.. .+...+.|-.... . ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 384 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT 384 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe
Confidence 4568999999999999999999999 99998887764321 1111222211000 0 02
Q ss_pred CCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 014834 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ 246 (417)
.++ +.+++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+++..|+=.|.+.++
T Consensus 385 ~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~- 459 (715)
T PRK11730 385 LDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP- 459 (715)
T ss_pred CCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc-
Confidence 344 5579999999999976653 69999999999999875 778888877765 223334799999988887731
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 247 ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.-= +.++...+.+..+.+.+++..+|..
T Consensus 460 ------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~ 487 (715)
T PRK11730 460 ------------LVE-VIRGEKTSDETIATVVAYASKMGKT 487 (715)
T ss_pred ------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 112 3446677889999999999999975
No 108
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.72 E-value=3.1e-07 Score=101.67 Aligned_cols=148 Identities=9% Similarity=0.097 Sum_probs=110.9
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcC-------------ceec
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G-------------~~~~ 165 (417)
.+++|+|||.|.||..||..+..+ |++|++.+.+.+. .+. ..+.| +..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 383 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQHS-LDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP- 383 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-
Confidence 568999999999999999999999 9999888765432 221 11122 221
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
..+. +.+++||+||=++|..... +++.++-+.++|+++|. -++++.+..+.. ..+..-+|+..|+=.|.+
T Consensus 384 ---~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~ 456 (714)
T TIGR02437 384 ---TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVH 456 (714)
T ss_pred ---eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcc
Confidence 2344 4579999999999976653 69999999999999875 777888877765 223334799999988888
Q ss_pred hHHHHHhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. ++.+ +.++...+.+.++.+.+++..+|..
T Consensus 457 ~---------------~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~ 487 (714)
T TIGR02437 457 R---------------MPLVEVIRGEKSSDETIATVVAYASKMGKT 487 (714)
T ss_pred c---------------CceEeecCCCCCCHHHHHHHHHHHHHcCCE
Confidence 7 3331 3446677889999999999999975
No 109
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.71 E-value=2.4e-07 Score=102.86 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=110.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----------hHHHHHHcCceec-------CC--CcC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE-------NG--TLG 170 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----------s~~~A~~~G~~~~-------~~--~~~ 170 (417)
.+++|+|||.|.||..||..+..+ |++|++.+.+.+. .++...+.|-... +. ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 458999999999999999999999 9999888765331 1111112221100 00 023
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++ +.+++||+||=+++..... +++.++.+.++|+++|. -++++.+..+.. .....-+|+..|+=.|.+.
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~---- 479 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDK---- 479 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCccc----
Confidence 45 4679999999999977653 69999999999999875 778888877765 2223347999999888877
Q ss_pred HhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
++.+ +..+...+.+.++.+.+++..+|..
T Consensus 480 -----------m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~ 509 (737)
T TIGR02441 480 -----------MQLLEIITHDGTSKDTLASAVAVGLKQGKV 509 (737)
T ss_pred -----------CceEEEeCCCCCCHHHHHHHHHHHHHCCCe
Confidence 3221 3346677889999999999999975
No 110
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.71 E-value=5.8e-07 Score=93.96 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=108.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec------------CCCcCCHHhhcCcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~------------~~~~~s~~Ea~~~A 179 (417)
+||||||+|.||..+|.+|.+ |++|+++++..++ .+... .|..+. .-.+.+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~~~~-ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVNKKR-ILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCCHHH-HHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 789999999999999999764 6888777665443 33333 443210 00123445678999
Q ss_pred CEEEEccCCch-------HHHHH---HHHHhcCCCCcEEEEecCchhh--------hhhh-cccCCCCCccEEEe---cc
Q 014834 180 DLVLLLISDAA-------QADNY---EKIFSCMKPNSILGLSHGFLLG--------HLQS-IGLDFPKNIGVIAV---CP 237 (417)
Q Consensus 180 DIViLavpd~~-------~~~Vl---~eI~~~lk~gaiLi~a~G~~i~--------~~~~-~~i~~~~dv~VI~v---~P 237 (417)
|+||+|+|... ...++ +.|.+++++|++|++.+-+... .+++ .++.... ++..+ .|
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~--~~~~~~~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQ--DFYVGYSPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCC--CeeEeeCCCc
Confidence 99999999541 12333 4688999999998866544221 1111 0112111 33333 33
Q ss_pred CCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-ceeccchhhhhhhhccccchhhhchHHHH
Q 014834 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYKSDIFGERGILLGAVHGI 316 (417)
Q Consensus 238 ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA~ 316 (417)
-.+|..+.++. -.+- +.... +.+..+.+..+...+... .+..++.. .-+.-.+-+.+ +...--++
T Consensus 156 v~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~-~AE~~Kl~~N~-~~av~Ia~ 221 (425)
T PRK15182 156 INPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESIK-VAEAAKVIENT-QRDLNIAL 221 (425)
T ss_pred CCCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCHH-HHHHHHHHHHH-HHHHHHHH
Confidence 34444321111 1223 22233 356777888888887521 12222111 11111111111 12222335
Q ss_pred HHHHHHHHHHcCCCHHHHHHH
Q 014834 317 VESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 317 iea~~d~~v~~Gl~~e~A~~~ 337 (417)
+--++..+.+.|++.++.++.
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHH
Confidence 555677778889888877654
No 111
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.67 E-value=1.6e-07 Score=93.33 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=72.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.||.++|+.|+.. |.+|++++|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 46788 9999999999999999999998 9999988887543 344555666530 123567889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+|..... .+..+.|+++.+|++.+.
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9975321 345677899998886653
No 112
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.66 E-value=3.5e-08 Score=87.40 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=68.6
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+++ ++|+|||+|.||.++++.|++. | .+|.+++|+.++..+.+.+.+.........+.+++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 567 8999999999999999999987 6 5788887765554455555453100001456778889999999999
Q ss_pred CCchH-H-HHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQ-A-DNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~-~-~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|+..+ . .+. .....++++++|++++-.
T Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELP-LPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCC-CCHHHcCCCCEEEEcCcC
Confidence 99886 1 111 011236788888877543
No 113
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.64 E-value=2.4e-06 Score=94.53 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=109.4
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCceec-------CC--C
Q 014834 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------NG--T 168 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~-------~~--~ 168 (417)
.++||+|||.|.||..+|.-+. .+ |++|++.+.+.+ ..+.+ .+.|-... .. .
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 58 999988876533 12221 11121100 00 1
Q ss_pred cCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
..++ +.+++||+||=++|.... .+++.+|-++++++++|. -++++++..+.+ .+...-+++.+|+=.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 568999999999997765 369999999999999875 778888877765 223334799999988887621
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.-= +..+...+.+..+.+.+++..+|..
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~ 479 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKT 479 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 112 3446677889999999999999975
No 114
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.62 E-value=2.8e-06 Score=84.76 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCC-------cCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~-------~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.||..+|..|.++ |++|.+..|... +.-.+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 6899999999999999999999 999988887532 33344564421 110 11222346789999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhhcccCCCCCccEEE------eccCCCchhHHHHHhhcccc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSIGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i-~~~~~~~i~~~~dv~VI~------v~Pntpg~~vr~ly~~G~~~ 254 (417)
|++||..+..++++.+.+.++++.+| .+.-|+.. ..+.. .+|+. +++. .....|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999988888999999999888755 46678754 23332 34443 3332 3344555441 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCCc
Q 014834 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPF 288 (417)
Q Consensus 255 ~G~Gv~~liav~~dvs-----gea~e~a~~L~~alG~~~ 288 (417)
.|.|-.. +....... .+..+...+++...|...
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~ 181 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDS 181 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCc
Confidence 1344433 33322222 345556677888888653
No 115
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.62 E-value=3e-07 Score=101.09 Aligned_cols=135 Identities=13% Similarity=-0.037 Sum_probs=99.2
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCC-ccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~d-v~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
||||+|+....++++++.++++++++|+++++++-.-.+.....++++ .+||..|| +.|.. ...|+.......+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999743222111133432 57999999 44555 3455555555568899
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
+++|+..+.+.++++.+++++..+|+ +++.++.++|++.- +.+++.-|-+.-++.+.+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~-----A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVF-----AAVSHLPHVLSFALVEQI 136 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHH-----HHHhhHHHHHHHHHHHHH
Confidence 99999998888999999999999995 67777888887752 334444444444555544
No 116
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.62 E-value=7.6e-08 Score=99.20 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=69.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... ...... ..+++|++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 36889 9999999999999999999988 9999876542111 111111 45899999999999999
Q ss_pred cCCch-----HHHHHH-HHHhcCCCCcEEEEec-C
Q 014834 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-G 213 (417)
Q Consensus 186 vpd~~-----~~~Vl~-eI~~~lk~gaiLi~a~-G 213 (417)
+|-.. ...++. +.+..||+|++|+-++ |
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCc
Confidence 99554 334564 6788999999988554 5
No 117
>PLN02306 hydroxypyruvate reductase
Probab=98.62 E-value=1.4e-07 Score=97.42 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=76.0
Q ss_pred hcccccc-cc---cchhhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHH-HHHcCc-----
Q 014834 94 VRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF----- 162 (417)
Q Consensus 94 vr~g~~~-f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~----- 162 (417)
+|+|+|. +. .....+.| ++|||||+|.+|..+|+.|+ .. |++|+++++........ ....|.
T Consensus 145 ~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~ 217 (386)
T PLN02306 145 MRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKAN 217 (386)
T ss_pred HHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhccccccc
Confidence 5667663 21 11267999 99999999999999999986 44 99987766543211111 111221
Q ss_pred --eecC-CCcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEe-cC
Q 014834 163 --TEEN-GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 163 --~~~~-~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a-~G 213 (417)
...+ ....+++|++++||+|++++|-... ..++. +.+..||+|++|+-+ =|
T Consensus 218 ~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG 274 (386)
T PLN02306 218 GEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRG 274 (386)
T ss_pred ccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCc
Confidence 0000 0124899999999999999996655 45665 688899999998844 35
No 118
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.61 E-value=1.8e-06 Score=95.63 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=110.7
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCceecC---------CC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~~---------~~ 168 (417)
.++||+|||.|.||..+|..+. .. |++|++.+.+.+ ..+.+ .+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999988 77 999988876533 22221 122211000 00
Q ss_pred cCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
+.+. +++++||+||=++|.... .+++.++.++++|+++|. -++++.+..+.+ .....-+++.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 567999999999997665 369999999999999875 778888877765 223334799999988887631
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.-= +.++...+.+..+.+.+++..+|..
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~ 484 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKT 484 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCc
Confidence 112 4457778889999999999999975
No 119
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.61 E-value=1.5e-06 Score=91.78 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCc---CCEEEEccCCchH-HH
Q 014834 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~---ADIViLavpd~~~-~~ 193 (417)
||.+||+||.+. |++|.|++|+.++..+..... |+.. ..+++|+++. +|+||+++|+... .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999999866655555432 4654 6789998875 8999999998765 57
Q ss_pred HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 194 Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
|++++.++|.+|.+|++.+-... ....+ ..-.+++.++- +|-.=+.. .-+ .|- + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvd-apVSGG~~---gA~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIG-MGVSGGEE---GAL-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEe-cCCCCCHH---HHh-------cCC-E-EEEeC--C
Confidence 88999999999999998874321 11111 11134566553 44221211 111 344 4 34555 4
Q ss_pred HHHHHHHHHHHHHhCCC
Q 014834 271 GRATNVALGWSVALGSP 287 (417)
Q Consensus 271 gea~e~a~~L~~alG~~ 287 (417)
.++.+.++-++..+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 68999999999999863
No 120
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.59 E-value=8.8e-08 Score=98.86 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+++|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 46889 9999999999999999999988 9999877543211 1 12121 46899999999999999
Q ss_pred cCCch-----HHHHHH-HHHhcCCCCcEEEEe-cC
Q 014834 186 ISDAA-----QADNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 186 vpd~~-----~~~Vl~-eI~~~lk~gaiLi~a-~G 213 (417)
+|... ...++. +.+..||+|++|+-+ -|
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 99754 334664 578889999998844 45
No 121
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.59 E-value=3.5e-06 Score=84.76 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----------hhHHHHHHcCceecC---------CCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----------~s~~~A~~~G~~~~~---------~~~~s 171 (417)
++||+|||.|.||..+|..+... |++|.+.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999999887 999998887632 222233333321110 00122
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+. ++++||+||=+++-... .++|.++-.+.+|+++|. -.+++++..+.+ ...-|+ +|+..|+=-|.+.
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~-~~~rpe--r~iG~HFfNP~~~----- 147 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE-ALKRPE--RFIGLHFFNPVPL----- 147 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH-HhCCch--hEEEEeccCCCCc-----
Confidence 22 78999999999996554 469999999999999985 888898876665 223333 6999999888887
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|+.+ +......+++..+.+.+++..+|..
T Consensus 148 ----------m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 148 ----------MPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ----------ceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3332 2234456679999999999999954
No 122
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.50 E-value=3.3e-07 Score=92.44 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=113.2
Q ss_pred ccchhhhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC
Q 014834 88 NRDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 88 ~~~e~~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~ 166 (417)
++-..-++.|+|.... ...++.| |++||||+|.+|.-.|..++.- |+.|+.++.- ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 3444557889998766 3689999 9999999999999999999988 8888655544 346788889998
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEE-ecC-c-----hhhhhhhcccCCCCCccEEEecc
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHG-F-----LLGHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~-a~G-~-----~i~~~~~~~i~~~~dv~VI~v~P 237 (417)
+.+.+|++..||+|-|.+|-.... .++. +-+..||+|..|+- +-| + .+.-+++ +..-..-+||.--.|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCC
Confidence 679999999999999999976654 5665 57788999998774 434 3 1222222 223334567777777
Q ss_pred CCCchhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014834 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 238 ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsg 271 (417)
..-+.. +++-.- -+.+.++|+..+-
T Consensus 268 p~~~~~-~~Lv~h--------pnVi~TpHlgasT 292 (406)
T KOG0068|consen 268 PKNGWD-SELVSH--------PNVIVTPHLGAST 292 (406)
T ss_pred Cccchh-HHHhcC--------CceeecCccccch
Confidence 654422 222211 3456788887664
No 123
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.49 E-value=5.3e-07 Score=82.86 Aligned_cols=95 Identities=23% Similarity=0.265 Sum_probs=67.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| |++.|+|||..|..+|+.|+.. |.+|+|....+ -..-+|..+|+.+ .+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DP-i~alqA~~dGf~v-----~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDP-IRALQAAMDGFEV-----MTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSH-HHHHHHHHTT-EE-----E-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECCh-HHHHHhhhcCcEe-----cCHHHHHhhCCEEEEC
Confidence 45778 9999999999999999999999 99999887653 4445667789984 6899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|-...+. -.+.++.||+|++|..++.|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875431 124556789999998777764
No 124
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.49 E-value=9.8e-06 Score=80.17 Aligned_cols=176 Identities=16% Similarity=0.220 Sum_probs=131.1
Q ss_pred HcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEE
Q 014834 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIA 234 (417)
Q Consensus 159 ~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~ 234 (417)
+.|+.+ +.|-.|+++++|++|+=+|-.. +.+++++|.+++++|++|..+.-++.. ++-+ .+. ++|+.|..
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE-~l~-R~DvgVsS 197 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFE-DLG-REDLNVTS 197 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHH-hhC-cccCCeec
Confidence 578886 6778899999999999999766 789999999999999999977766421 2212 122 58999999
Q ss_pred eccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH
Q 014834 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH 314 (417)
Q Consensus 235 v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p 314 (417)
.||-+ .+.. +| -.++ ....+++++.+...+|.+..|+. .+ ..+-++.+.++-.|..+.
T Consensus 198 ~HPaa-VPgt------------~~-q~Yi-~egyAtEEqI~klveL~~sa~k~-ay------~~PA~LvspV~DMgS~VT 255 (340)
T TIGR01723 198 YHPGC-VPEM------------KG-QVYI-AEGYASEEAVNKLYELGKKARGK-AF------KMPANLLGPVCDMCSAVT 255 (340)
T ss_pred cCCCC-CCCC------------CC-ceEe-ecccCCHHHHHHHHHHHHHhCCC-ee------ecchhhccchhhHHHHHH
Confidence 99943 2221 12 1223 37788999999999999999985 11 234456666555555555
Q ss_pred HH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 315 GI----VESLFRRFTE-NGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 315 A~----iea~~d~~v~-~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
+. +-.-++..++ .|-|.+.+-..+.+++. .++.|+.++|+..|-+.+.
T Consensus 256 Av~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~-tmasLme~~GI~gm~~aLn 308 (340)
T TIGR01723 256 AIVYAGLLAYRDAVTKILGAPADFAQMMADEALT-QIHNLMEEKGIDKMEEALD 308 (340)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 53 3344555554 69999999999999999 9999999999999988876
No 125
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.48 E-value=1.1e-05 Score=79.65 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=129.7
Q ss_pred HcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEE
Q 014834 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIA 234 (417)
Q Consensus 159 ~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~ 234 (417)
+.|+.+ +.|-.|+++++|++|+=+|-.. +.+++++|.+++++|++|..+.-++ +.++-+ . .=|+|+.|..
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le-~-l~R~DvgIsS 199 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFK-D-LGRDDLNVTS 199 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHH-H-hCcccCCeec
Confidence 478886 6778899999999999999766 7899999999999999999777664 222211 1 2268999999
Q ss_pred eccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH
Q 014834 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH 314 (417)
Q Consensus 235 v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p 314 (417)
.||-+ .+.. .|-.. ++ ...+++++.+...+|.+..|+. ++ ..+-++.+.++-.+..+.
T Consensus 200 ~HPaa-VPgt------------~Gq~~-i~-egyAtEEqI~klveL~~sa~k~-ay------~~PA~lvspV~DMgS~VT 257 (342)
T PRK00961 200 YHPGA-VPEM------------KGQVY-IA-EGYADEEAVEKLYEIGKKARGN-AF------KMPANLIGPVCDMCSAVT 257 (342)
T ss_pred cCCCC-CCCC------------CCcee-cc-cccCCHHHHHHHHHHHHHhCCC-ee------ecchhhcchhhhHHHHHH
Confidence 99933 2221 12212 22 5567999999999999999985 11 234456666555555555
Q ss_pred HH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 315 GI----VESLFRRFTE-NGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 315 A~----iea~~d~~v~-~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
+. +-.-++..++ .|-|.+.+-+.+.+++. .++.|+.++|+.+|-+.+.
T Consensus 258 Av~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~-tmasLme~~GI~gm~~aLn 310 (342)
T PRK00961 258 AIVYAGILAYRDAVTQILGAPADFAQMMADEALT-QITALMREEGIDNMEEALD 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHhHHHHhcC
Confidence 53 3444555554 69999999999999998 9999999999999988876
No 126
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.45 E-value=5e-06 Score=86.04 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=64.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----------------cCceecCCCcCCHHhh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----------------~G~~~~~~~~~s~~Ea 175 (417)
+||+|||+|.||..+|..+ .. |++|++.+++.++ .+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d~~k-v~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDILPSR-VAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECCHHH-HHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 4899999999999999655 46 8998877765433 333332 11111 002346788
Q ss_pred cCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 176 ~~~ADIViLavpd~-----------~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+++||+||+++|.. ...+++++|.+ +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999954 33467778877 79999887666443
No 127
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.44 E-value=1e-06 Score=86.42 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
|+||||||+|.||..++++|.+. +.++++. +.++..++..+.+...|... +.+.+|++.++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 0124543 44444334344445556553 568889889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecC
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 98887776544 344 4555544
No 128
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.44 E-value=9.1e-07 Score=93.48 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=85.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.+|..+|+.|+.. |.+|++..+...+ ...+...|+. ..+++++++.+|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 46889 9999999999999999999988 9998887665333 3345557876 45789999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhh-hhhhcccCCCCCccEEEeccCCCchh
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~-~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+.. ..++. +.+..||+|.+|+.++-+... .+.. +..-.++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 753 34664 677889999998855444311 1111 11112577777888665444
No 129
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=3.9e-06 Score=81.59 Aligned_cols=145 Identities=20% Similarity=0.155 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc---CcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~---~~ADIViLavpd 188 (417)
++||.||+|.||..+.++|.+. |++|+++++ +....+.+..+|.+. ..+++|.+ ...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV~yD~-n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVVGYDV-NQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEEEEcC-CHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 5899999999999999999999 999865554 466788888889765 55666654 456899999998
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 189 AA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 189 ~~-~~~Vl~eI~~~lk~gaiLi~a~G~~----i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
.. ..++++++.+.|.+|.+|++-+--+ +.... ...+++++++-+--.+-..-. + +|.. +
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~---~l~~kgi~flD~GTSGG~~G~----~-------~G~~--l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAK---LLAEKGIHFLDVGTSGGVWGA----E-------RGYC--L 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHH---HHHhcCCeEEeccCCCCchhh----h-------cCce--E
Confidence 84 5679999999999999999876543 22222 134567888755432211111 1 2333 3
Q ss_pred eecCCCCHHHHHHHHHHHHHhC
Q 014834 264 AVHQDVDGRATNVALGWSVALG 285 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG 285 (417)
-+.. ++++.+...-+|.++-
T Consensus 134 MiGG--~~~a~~~~~pif~~lA 153 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALA 153 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhC
Confidence 3344 5689999999999885
No 130
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.32 E-value=3.2e-06 Score=83.39 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... .+.+.++++.++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665 44555444455566666421 15689999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 014834 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
+.++..+.. +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 888776654 4565 4444444
No 131
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=1.7e-06 Score=86.68 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=61.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|+|||.| .||.+||.+|.+. |..|+++++.. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 46889 999999996 9999999999999 99998886541 257788999999999
Q ss_pred ccCCchHH-HHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~-~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++..... ..+ +++|++|++++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEec
Confidence 99976432 232 89999888763
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.30 E-value=4.3e-06 Score=83.47 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| +|++|||+|.+|.+++..|+.. |.+|++.+|+..+ .+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~~-~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSAH-LARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 44678 9999999999999999999998 9999888887443 566667787631 123567889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+|+... -++....|+++.+|++.+
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEc
Confidence 986432 245667889999988665
No 133
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.30 E-value=4.5e-06 Score=86.94 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+|+++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4788 9999999999999999999988 9999887665443 4566778886 356788999999999988
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~ 215 (417)
.. ..+++ +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44565 4778899999988666543
No 134
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.24 E-value=6.2e-06 Score=86.37 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.5
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.|+.. |.+|++.++...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999998 9999888776444 3455566876 357889999999999998
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~ 215 (417)
.. ..++. +....||+|.+++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 64 33565 5778899999988777664
No 135
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.2e-05 Score=82.91 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=102.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC----ceecCCCcCCHHhh---cCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G----~~~~~~~~~s~~Ea---~~~ADIViL 184 (417)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-++.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4799999999999999999999 9999999999887766655544 332 4566664 567788999
Q ss_pred ccCCch-HHHHHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCc
Q 014834 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~----~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv 259 (417)
+|+... +..++++++|+|.+|.+|++.+-- ++....+ .-.+++.||..--.+ |. +|.
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GE----eGA 135 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GE----EGA 135 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cc----ccc
Confidence 998753 457889999999999999987653 2322221 234577888532211 10 221
Q ss_pred ---eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 260 ---NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ---~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|+ +-|.. +.++.+.+.-++..|-..
T Consensus 136 ~~GPS-iMpGG--~~eay~~v~pil~~IaAk 163 (473)
T COG0362 136 RHGPS-IMPGG--QKEAYELVAPILTKIAAK 163 (473)
T ss_pred ccCCC-cCCCC--CHHHHHHHHHHHHHHHhh
Confidence 22 33333 568999999999999764
No 136
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.23 E-value=3.4e-06 Score=78.80 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=60.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--------------CC---CcCCHHh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------~~---~~~s~~E 174 (417)
|||+|||+|-+|..+|..|.+. |++|+ +.+.++...+.. ..|..+. .+ ...+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 6999999999999999999999 99986 455444333322 2232110 00 1356788
Q ss_pred hcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCc
Q 014834 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 175 a~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+++++|++|+|+|... ..++++.|.++++++++|++-+=+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8999999999998321 345677899999999988866533
No 137
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.19 E-value=5.1e-05 Score=80.62 Aligned_cols=204 Identities=14% Similarity=0.071 Sum_probs=107.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-------------CC---CcCCHHh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------------NG---TLGDIYE 174 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-------------~~---~~~s~~E 174 (417)
|+||+|||+|.+|..+|..|.+. |.|++|+..+.. ....+...+ |.... ++ ...+..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD~~-~~~v~~l~~-g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVDIS-VPRIDAWNS-DQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEECC-HHHHHHHHc-CCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 58999999999999999999877 224677655543 322332211 11000 00 1345678
Q ss_pred hcCcCCEEEEccC-Cc--------------hHHHHHHHHHhcCCCCcEEEEec----CchhhhhhhcccCCCCCccE-EE
Q 014834 175 TISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSIGLDFPKNIGV-IA 234 (417)
Q Consensus 175 a~~~ADIViLavp-d~--------------~~~~Vl~eI~~~lk~gaiLi~a~----G~~i~~~~~~~i~~~~dv~V-I~ 234 (417)
++++||++|+||| |. .+.++.++|.++++++++|++-+ |.+- .+......-.++.+| +.
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f~v~ 153 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINFQIL 153 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCeEEE
Confidence 8999999999986 22 23456778999999999877544 4321 111100000112232 34
Q ss_pred eccC--CCchhHHHHHhhcccccCCCceEEE-eecCCCC-HHHHHHHHHHHHHhCC-Cceeccchhhhhhhhccccchhh
Q 014834 235 VCPK--GMGPSVRRLYVQGKEINGAGINSSF-AVHQDVD-GRATNVALGWSVALGS-PFTFATTLEQEYKSDIFGERGIL 309 (417)
Q Consensus 235 v~Pn--tpg~~vr~ly~~G~~~~G~Gv~~li-av~~dvs-gea~e~a~~L~~alG~-~~~iettf~~e~~~dl~ge~t~L 309 (417)
..|- .||..+++.+. .+-++ ....+.+ .++.+.+.++...+-. ..++.|+.+ +-+.-.+ .
T Consensus 154 ~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~-~AE~~K~-----~ 218 (473)
T PLN02353 154 SNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW-SAELSKL-----A 218 (473)
T ss_pred ECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH-HHHHHHH-----H
Confidence 4452 23444333322 34432 3222222 4677888888887742 223333321 1121112 2
Q ss_pred hchHH----HHHHHHHHHHHHcCCCHHHHHH
Q 014834 310 LGAVH----GIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 310 ~G~~p----A~iea~~d~~v~~Gl~~e~A~~ 336 (417)
.++-- +|+..+.+.+-+.|++..+...
T Consensus 219 eN~~ra~~Iaf~NEla~lce~~giD~~eV~~ 249 (473)
T PLN02353 219 ANAFLAQRISSVNAMSALCEATGADVSQVSH 249 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22222 2556666666666666655443
No 138
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.18 E-value=6.2e-05 Score=75.15 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=93.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-HcCceec-CCC--c----CCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~G~~~~-~~~--~----~s~~Ea~~~ADIVi 183 (417)
+||+|||+|.||.-+|..|.+. |.+|.+..|..+. .+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 6899999999999999999998 9998887775332 33222 3354321 111 0 01112235689999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhhcccCCCCCccEE------EeccCCCchhHHHHHhhccccc
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i-~~~~~~~i~~~~dv~VI------~v~Pntpg~~vr~ly~~G~~~~ 255 (417)
++||-....+.++.+.+++.++++| .+--|+.. ..+.. .+|++ .++ ......|+.+. ..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~-~v~~g~~~~ga~~~~pg~v~---------~~ 142 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHA-RCIFASSTEGAFRDGDWRVV---------FA 142 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCC-cEEEEEeeeceecCCCCEEE---------Ee
Confidence 9999998889999999999998865 47778864 33333 34543 232 23445566551 11
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 256 G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|.|... +... +++..+...+++...|..
T Consensus 143 ~~g~~~-~G~~---~~~~~~~l~~~l~~ag~~ 170 (305)
T PRK05708 143 GHGFTW-LGDP---RNPTAPAWLDDLREAGIP 170 (305)
T ss_pred ceEEEE-EcCC---CCcchHHHHHHHHhcCCC
Confidence 333322 3322 223344455677776754
No 139
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.17 E-value=0.00024 Score=71.66 Aligned_cols=205 Identities=13% Similarity=0.032 Sum_probs=129.3
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCChh------h-----------HHHHHHcCceec-------CC--CcC--CHH
Q 014834 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------S-----------FAEARAAGFTEE-------NG--TLG--DIY 173 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~------s-----------~~~A~~~G~~~~-------~~--~~~--s~~ 173 (417)
||..||..+..+ |++|.+.+...+. . ++.+.+.|.... +. ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 899999999998 9999988876521 1 111222332110 00 011 256
Q ss_pred hhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhh
Q 014834 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (417)
Q Consensus 174 Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~ 250 (417)
+++++||+||-++|..... +++.+|.+.++|+++|. -++++.+..+.. ..+..-+++.+|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 8899999999999987764 58889999999999875 556677766654 22222369999998887662
Q ss_pred cccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCC
Q 014834 251 GKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (417)
Q Consensus 251 G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl 329 (417)
+.+ +..+...+.+..+.+..++..+|... +.. .+.. .+ ++.....+++.-++..+.+.|.
T Consensus 146 ---------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~-v~v---~d~~-----Gf-i~nri~~~~l~EAl~l~e~g~~ 206 (314)
T PRK08269 146 ---------PLVEVSPSDATDPAVVDRLAALLERIGKVP-VVC---GPSP-----GY-IVPRIQALAMNEAARMVEEGVA 206 (314)
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcE-EEe---cCCC-----Cc-chHHHHHHHHHHHHHHHHhCCC
Confidence 221 33455677899999999999999752 111 0111 11 2334444445555566677778
Q ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHhcHHHHHh
Q 014834 330 SEDLAYKNTVECIT-----GIISKIISTQGMLAVYN 360 (417)
Q Consensus 330 ~~e~A~~~~~q~~~-----~g~~~li~e~G~~~l~~ 360 (417)
++++.........- .|.-+++-..|++..++
T Consensus 207 ~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~ 242 (314)
T PRK08269 207 SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYY 242 (314)
T ss_pred CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHH
Confidence 99887765543311 15556666666644443
No 140
>PLN02494 adenosylhomocysteinase
Probab=98.16 E-value=1e-05 Score=85.63 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+.. .+.+++++.+|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3788 9999999999999999999988 9998877665333 34667788873 47889999999999877
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..... +..+.+..||+|.+|+.++-+
T Consensus 318 Gt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 65322 224667789999998865543
No 141
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.16 E-value=1e-05 Score=81.16 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+.++..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 578 9999999999999999999986 5 4788888876666678888776421 0234667889999999999
Q ss_pred CCchHHHHHHHHHhcC-CCCcEEEEec
Q 014834 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~l-k~gaiLi~a~ 212 (417)
+.....+++..+.... +++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666544
No 142
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.16 E-value=0.00011 Score=73.82 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=97.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC--------cCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~--------~~s~~Ea~~~ADIVi 183 (417)
+||.|||+|.||.-++..|.+. |.+|.+..|.. ..+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~--~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR--RLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH--HHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 87777776652 2455566676543211 112235566899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEE-ecc-----CCCchhHHHHHhhccccc
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIA-VCP-----KGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-~~~~~~~i~~~~dv~VI~-v~P-----ntpg~~vr~ly~~G~~~~ 255 (417)
+++|-.+..++++.+.+.+++.+.|+ +--|... +.+.. .+|.. +++. +.+ ++|+.+. ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 99999999999999999999998554 6668753 33332 44554 3332 333 3344431 11
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 256 G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|.|-.. +........+..+...++|...|..
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC
Confidence 334444 2222221224555566667777765
No 143
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=98.12 E-value=0.00017 Score=69.64 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=129.8
Q ss_pred HHcCceecCCCcCCHHhhcCcCCEEEEccCC-chHHHHHHHHHhcCCCCcEEEEecCchhhhhhh-cccCCCCCccEEEe
Q 014834 158 RAAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQS-IGLDFPKNIGVIAV 235 (417)
Q Consensus 158 ~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd-~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~-~~i~~~~dv~VI~v 235 (417)
++.|+.+ +.+-.|+++++|+||.=.|- ..|.++++++...+++|++|.++.-+....+.. ..-.-+++.+|-.-
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 3467776 67788999999999998885 567899999999999999999888764322111 00122568899999
Q ss_pred ccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH
Q 014834 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG 315 (417)
Q Consensus 236 ~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA 315 (417)
||-+ .+.+ +|--+ ++ +..+++++.+..-+|..-.-+. .| ..+-.|+|-++-.|..+.+
T Consensus 199 hpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-af------k~pa~llgpvcdmcsavta 256 (343)
T COG4074 199 HPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AF------KVPAYLLGPVCDMCSAVTA 256 (343)
T ss_pred CCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-cc------cCcHHhhchHHHHHHHHHH
Confidence 9944 3332 23322 44 7788888888777766544322 22 2345578888888888888
Q ss_pred HHHHHHHH---HH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 316 IVESLFRR---FT--ENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 316 ~iea~~d~---~v--~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
++-+..-. +| -.|-|.+-|...+.+.+. .+++++.+.|++.|-+.+.
T Consensus 257 ivyagll~yrdavt~ilgapadfaqmma~eal~-qi~~lmee~gidkmeeald 308 (343)
T COG4074 257 IVYAGLLTYRDAVTDILGAPADFAQMMAVEALQ-QIAKLMEEEGIDKMEEALD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHHHHhhhhHHHhhcC
Confidence 76554332 22 369999999999999998 9999999999999998876
No 144
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.12 E-value=1.5e-05 Score=67.54 Aligned_cols=80 Identities=26% Similarity=0.314 Sum_probs=61.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~ 189 (417)
||||||+|.+|......+++. ..+.++. +.++..++....+++.|+.. ..+.+++++ +.|+|++++|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCCc
Confidence 799999999999999998876 1144554 33444334445567788885 788999887 789999999999
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++......
T Consensus 74 ~h~~~~~~~l~ 84 (120)
T PF01408_consen 74 SHAEIAKKALE 84 (120)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99988876554
No 145
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.11 E-value=2e-05 Score=82.28 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.+|..+++.++.. |.+|++.++. +.....|.+.|+.. .+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEEC
Confidence 34678 9999999999999999999998 9998886655 34467888899863 4677889999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~ 214 (417)
+... .++. +....|++|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 8753 3454 457889999988766543
No 146
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.09 E-value=1.4e-05 Score=70.70 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=71.1
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC----------cCCHHhhcCcCCEEE
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~----------~~s~~Ea~~~ADIVi 183 (417)
|+|||.|.||.-+|..|... |.+|.+..|.. ..+.-++.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99998877753 3444556676542111 111124567899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcE-EEEecCchh
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i 216 (417)
+++|..+..++++.+.+++.+++. |++--|+..
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~ 106 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGN 106 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSH
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCc
Confidence 999999999999999999999865 456678863
No 147
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.07 E-value=7.9e-06 Score=82.06 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=63.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---C--ceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G--~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||..+++.+... ....+|.|++|..++..+.+.+. | +.. +.+.++++++||+|+.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCAT 197 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEee
Confidence 8999999999999999876652 00347889999866666666553 4 333 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|.. ..++.. ..++||+.| ++.|
T Consensus 198 ~s~--~pvl~~--~~l~~g~~i-~~ig 219 (314)
T PRK06141 198 LST--EPLVRG--EWLKPGTHL-DLVG 219 (314)
T ss_pred CCC--CCEecH--HHcCCCCEE-EeeC
Confidence 865 233321 457889844 4444
No 148
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.01 E-value=2.2e-05 Score=67.50 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=60.9
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEE-ecCChhhHHHHHHcC-ceecCCCcCCHHhh-cCcCCEEEEccCC
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea-~~~ADIViLavpd 188 (417)
||+|||+ |.+|..++..|.+. .++++... .++.++....+...+ +....-...+..+. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 6899995 89999999999884 15555433 232221111122222 11000000111111 2589999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999887667778999999999886
No 149
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=1.5e-05 Score=79.89 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred hccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| |+|+||| .|.||.+||.+|.+. |+.|.+++.+. .+++|++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5889 9999999 999999999999999 99998874221 1356888999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.... +++. ++++|++|++++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 998653 3221 289999888763
No 150
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.96 E-value=2e-05 Score=79.64 Aligned_cols=94 Identities=17% Similarity=0.066 Sum_probs=65.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH---HcCc--eecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGF--TEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~---~~G~--~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-+++||||+|.||..+++.|... ....+|.|++|..++..+.+. +.|+ .. +.+.+|++++||+|+.|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~----~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~----~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRV----FDLEEVSVYCRTPSTREKFALRASDYEVPVRA----ATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE----eCCHHHHhccCCEEEEe
Confidence 37999999999999999888763 013378888887665444433 3453 33 57899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
||... .++. ...++||+.|.-.+....
T Consensus 200 T~s~~--P~~~--~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 200 TPSRK--PVVK--ADWVSEGTHINAIGADAP 226 (325)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecCCCCc
Confidence 98642 2232 234689998775655443
No 151
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.95 E-value=2.6e-05 Score=73.61 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=52.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIVi 183 (417)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 366889 9999999999999999999999 9999877665443334444446553 24455554 799999
Q ss_pred EccCC
Q 014834 184 LLISD 188 (417)
Q Consensus 184 Lavpd 188 (417)
.+..-
T Consensus 91 p~A~~ 95 (200)
T cd01075 91 PCALG 95 (200)
T ss_pred ecccc
Confidence 66553
No 152
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.94 E-value=1.4e-05 Score=70.67 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=60.5
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC---ceecCCCcCCHHhhcCcCCE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G---~~~~~~~~~s~~Ea~~~ADI 181 (417)
..++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+ +.. -...+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 46788 9999999999999999999999 88 49999998777777777762 211 014456677899999
Q ss_pred EEEccCCchH
Q 014834 182 VLLLISDAAQ 191 (417)
Q Consensus 182 ViLavpd~~~ 191 (417)
||.+||-...
T Consensus 79 vI~aT~~~~~ 88 (135)
T PF01488_consen 79 VINATPSGMP 88 (135)
T ss_dssp EEE-SSTTST
T ss_pred EEEecCCCCc
Confidence 9999996654
No 153
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.87 E-value=3.9e-05 Score=76.54 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|+|||. |.||.+||..|.+. |..|+++.. + +.++++.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEE
Confidence 45899 99999999 99999999999999 999887621 1 2357888999999999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~-~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++.... ... ++++|++|++++
T Consensus 208 avg~~~~v~~~------~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFVTKE------FVKEGAVVIDVG 230 (284)
T ss_pred ecCccccCCHH------HccCCcEEEEec
Confidence 9997554 222 389999988763
No 154
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.85 E-value=3.2e-05 Score=80.70 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=58.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+.| ++|+|||+|.||..+++.|+.. |. +|++.+|+..+..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 180 ~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISST 250 (423)
T ss_pred ccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEECC
Confidence 678 9999999999999999999988 87 788888876666667777764320 0235667889999999999
Q ss_pred CCch
Q 014834 187 SDAA 190 (417)
Q Consensus 187 pd~~ 190 (417)
+...
T Consensus 251 ~s~~ 254 (423)
T PRK00045 251 GAPH 254 (423)
T ss_pred CCCC
Confidence 8543
No 155
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=0.00016 Score=71.05 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--CceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
|+||||||+|+||..+++.|.+. .++++......+....+..... +... +.+.+++..+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 57999999999999999999875 1344433322211111112222 4443 56787775569999999999
Q ss_pred chHHHHHHHHHhcCCCCc-EEEEecC
Q 014834 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
..+.++..++. +.|+ +++...|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 88877766554 3455 4444444
No 156
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00044 Score=67.17 Aligned_cols=219 Identities=11% Similarity=0.056 Sum_probs=131.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH----HHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A----~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
..++|||.|..|.+....--+- ++. ++. ..+++.+.+ +..+.. ..+.+...+-.+++|.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs~-i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CSA-ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--ehh-hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5799999999999944432222 222 221 112333333 334433 2345555666788888888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCC-CCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~-~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|..+.++.... ..+||++|++++|++-..+-. ... .+.--..+||+.......+--++- ++--..++ .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~---~~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILA---PLGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhh---hhhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 87555554332 347999999999996432211 111 233345799999888766555543 22222222 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc-eeccchhhhhhhhccccchhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPF-TFATTLEQEYKSDIFGERGIL-LGAVHGIVESLFRRFTENGMSEDLAYKNTVECITG 344 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~-~iettf~~e~~~dl~ge~t~L-~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~ 344 (417)
.| .....+++.|+.-+|+.. .+. +....+||..... ++.+.+...-..+....+|.++-++.-+ +--+.+
T Consensus 146 aD--~~g~ai~q~la~emgg~~f~V~-----~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~-~~pL~~ 217 (289)
T COG5495 146 AD--DVGYAIVQSLALEMGGEPFCVR-----EEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVE-VGPLAR 217 (289)
T ss_pred cc--ccccHHHHHHHHHhCCCceeec-----hhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeee-ehHHHH
Confidence 33 346677889999999974 332 4566789988766 4456666666778889999999877765 222334
Q ss_pred HHHHHHHHhcHH-HHHhccc
Q 014834 345 IISKIISTQGML-AVYNSFS 363 (417)
Q Consensus 345 g~~~li~e~G~~-~l~~~vs 363 (417)
+..+-+++.|.. .|---|+
T Consensus 218 g~~~n~~qrg~a~aLTgpVa 237 (289)
T COG5495 218 GALENTLQRGQACALTGPVA 237 (289)
T ss_pred HHHHHHHHhhhhhcccCCcc
Confidence 666666666663 4433333
No 157
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=7.3e-05 Score=74.93 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=67.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc---CceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 89999999999999999997530 43 6888888766666666554 33321 3578899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
... .++. ..++||+.|.-.+....
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAFTP 221 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCCCC
Confidence 764 3343 24789998776665543
No 158
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.76 E-value=0.00014 Score=70.47 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=102.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cCcee-cC------------
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTE-EN------------ 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G~~~-~~------------ 166 (417)
++.|+|||.|.||..+|+--..+ |++|++.+++.. ...+|.+ .+... ..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~~-aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANED-ALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCHH-HHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 48899999999999999999888 999988876533 2222222 11110 00
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
.+..+..++++++|+||=++-.+.. .+++.+|-..-++.+++. -.+.+.+..+.. .....-.|...|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1245677889999999877654433 356767766677887765 677787766654 233334677777666777
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+++ +.+ +.-+.+.|++-......+..++|..
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 653 222 1226677888888889999999975
No 159
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.69 E-value=0.0002 Score=70.04 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=89.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++||+|||+ |.||..+++.+.+. .++++....+.+..........|+.. ..+++++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 479999998 99999999988763 15666544443322222223344433 568888888999999999998
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH--HHHHhhcccccC-CCceEEEee
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AGINSSFAV 265 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v--r~ly~~G~~~~G-~Gv~~liav 265 (417)
...++...... .|. +|+=..|++....+. .....+.++ +.++||..-... ..+-+.--...| .-+-. +-.
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~~~~-l~~aa~~~~-v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei-~E~ 145 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQLAE-LEEAAKKIP-VVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEI-IEA 145 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhcCCC-EEEECcchHHHHHHHHHHHHHHHhcCCCCEEE-EEc
Confidence 88777765443 354 444455777544332 111224444 445565543321 001000000111 11111 222
Q ss_pred cC----C-CCHHHHHHHHHHHHHhC
Q 014834 266 HQ----D-VDGRATNVALGWSVALG 285 (417)
Q Consensus 266 ~~----d-vsgea~e~a~~L~~alG 285 (417)
|. | +||.++.++..+....+
T Consensus 146 HH~~K~DaPSGTA~~l~~~i~~~~~ 170 (257)
T PRK00048 146 HHRHKVDAPSGTALKLAEAIAEARG 170 (257)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 33 2 47888888888877665
No 160
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.68 E-value=0.00017 Score=75.34 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=58.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+..+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 3778 9999999999999999999988 8 5788888876665667777664320 123567888999999999
Q ss_pred cCCch
Q 014834 186 ISDAA 190 (417)
Q Consensus 186 vpd~~ 190 (417)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97543
No 161
>PLN00203 glutamyl-tRNA reductase
Probab=97.68 E-value=0.00017 Score=77.58 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=61.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+.+ ++|+|||.|.||..++++|... |. +|++.+|+..+....+.+. |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999988 87 7888998876666666655 3211000134567889999999999
Q ss_pred cCCc---hHHHHHHHHH
Q 014834 186 ISDA---AQADNYEKIF 199 (417)
Q Consensus 186 vpd~---~~~~Vl~eI~ 199 (417)
|+.. ...+.++.+.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 8632 2345666554
No 162
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.64 E-value=0.00042 Score=68.24 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CChhh--HHHHHH-----cCceecCCCcCCHHhhcCcCCE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~s~s--~~~A~~-----~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
|.||+||| +|.||..+++.+.+. .+++++...+ .++.. ...+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 46999999 699999999999864 1676654444 32211 112222 24443 4678787667999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCc-cEEEeccCCCchhH--HHHHhhccccc-C
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNI-GVIAVCPKGMGPSV--RRLYVQGKEIN-G 256 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv-~VI~v~Pntpg~~v--r~ly~~G~~~~-G 256 (417)
|+.++||..+.+++..... .|. +|+=..|++....++ ....-+.- --+.+.||++--+. -++.++-.+.. .
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~-l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~ 147 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQE-LADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGD 147 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHH-HHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccC
Confidence 9999999888887765543 344 555556887543332 11111221 23556777765441 11111100000 1
Q ss_pred CCceEEEeecC----C-CCHHHHHHHHHHHHHhC
Q 014834 257 AGINSSFAVHQ----D-VDGRATNVALGWSVALG 285 (417)
Q Consensus 257 ~Gv~~liav~~----d-vsgea~e~a~~L~~alG 285 (417)
..+-. +-.|. | +||.++.+++.+....+
T Consensus 148 ~dieI-~E~HH~~K~DaPSGTA~~l~~~i~~~~~ 180 (266)
T TIGR00036 148 YDIEI-IELHHRHKKDAPSGTALKTAEMIAEARG 180 (266)
T ss_pred CCEEe-eeeccCCCCCCCCHHHHHHHHHHHHhhc
Confidence 11122 22232 2 47888888888877765
No 163
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.63 E-value=0.00041 Score=68.95 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH--cCceec--CC---CcCCHHhhcCcCCEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~--~G~~~~--~~---~~~s~~Ea~~~ADIV 182 (417)
|+||+|||.|+||..+|..+... |+ +|++.++..+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 68999999999999999999877 65 787777654332222211 111000 00 12345 568999999
Q ss_pred EEcc
Q 014834 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 164
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.57 E-value=0.00015 Score=74.15 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc---CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-++++|||+|.||..+++.+..-. .+ +|.|++|..++..+.+++. |+.. ..+.+.++++++||+|+.+|
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEec
Confidence 378999999999999998887641 33 7888888766544444332 3321 01568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+......+++. ..++||+.|.-.+.+..
T Consensus 202 ~S~~~~Pvl~~--~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 202 ADKTNATILTD--DMVEPGMHINAVGGDCP 229 (346)
T ss_pred CCCCCCceecH--HHcCCCcEEEecCCCCC
Confidence 75432234431 35689998776665544
No 165
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.57 E-value=0.00023 Score=71.88 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 89999999999999998876430 44 677888876665555542 34421 01567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
|.. + .++. ..+++|+.|.-.+.+..
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~p 225 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFMP 225 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCCc
Confidence 965 2 2443 56799998876666543
No 166
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.54 E-value=0.00021 Score=70.96 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=55.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC-----ceecCCCcCCHHhhcCcCC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G-----~~~~~~~~~s~~Ea~~~AD 180 (417)
.+++ ++|.|||+|-+|.+++..|... |. +|.|.+|..++..+.+++.+ ... ....+..+.++++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 3567 8999999999999999999998 87 78889988766666665432 111 00223455678899
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999998653
No 167
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.53 E-value=0.00019 Score=72.00 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-++++|||+|.||..+++.+..- ..+ +|.|++|..++..+.+.+ .|+.. ..+.+.+|++.+||||+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38999999999999999998864 134 788888886665554443 24321 1156899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
|+... .+++ ...++||+.|.-.+.+..
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~p 216 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNYP 216 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCCC
Confidence 99543 2332 235688887776555543
No 168
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00036 Score=71.08 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+...++|||+|.|+..|.+.++.- .++ +|.|+.|+.+...+.+.. .+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 347899999999999999999875 144 788888886655554432 23210 12267899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
||... .+++ ...++||+.|.-.++..
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad~ 228 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGADA 228 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCCC
Confidence 99876 3332 34578999888666653
No 169
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.50 E-value=0.00019 Score=75.09 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=59.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC-ceecCCCcCCHHhhcCcCCEEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.+.| ++|.|||.|-||.+++.+|... |. +++|.+|+..+..+.+.+.+ ... -...+..+.+.++|+||.
T Consensus 178 ~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI~ 248 (414)
T PRK13940 178 NISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIIIA 248 (414)
T ss_pred CccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEEE
Confidence 4677 9999999999999999999988 86 78899998777777887765 321 012445678899999999
Q ss_pred ccCCch
Q 014834 185 LISDAA 190 (417)
Q Consensus 185 avpd~~ 190 (417)
||+...
T Consensus 249 aT~a~~ 254 (414)
T PRK13940 249 AVNVLE 254 (414)
T ss_pred CcCCCC
Confidence 998543
No 170
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.48 E-value=0.00029 Score=71.23 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=64.3
Q ss_pred CEEEEEcccchHHHHHHHHHh-hhhhhcCCc-EEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~-~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
++++|||+|.||..++..|.. . ++ +|.|++|..++..+.+.+. |+.. ..+.+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEe
Confidence 799999999999999999975 3 54 6888888876666655543 5432 0146788999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
||... .++. ...+++|+.|...+
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeC
Confidence 98643 2332 13478898766443
No 171
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.48 E-value=0.00032 Score=61.23 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=59.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhH--HHHH-----HcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSF--AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~--~~A~-----~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|+|+ |.||..+++.+.+. .++++....++.. ... +... ..|+.. ..++++++..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 48999999 99999999999984 1777655544322 100 0111 234443 46899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhh
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~ 217 (417)
|-.+-|....+.++....+ |. +|+=..|++-.
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE 104 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH
Confidence 9999777777777655444 44 45567898643
No 172
>PRK06046 alanine dehydrogenase; Validated
Probab=97.46 E-value=0.00029 Score=71.21 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||..++.+|... .++ .|.+++|..++..+.+.+ .|+.. ..+.+.+++++ +|+|+++|
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 144 566677765444444433 24321 01457888887 99999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
|... .+++ ...+++|+.|.-.+....
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGADAP 227 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCCC
Confidence 9753 2332 234689998776665543
No 173
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.46 E-value=0.00069 Score=65.61 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=64.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.+||+||||.+|..+..-+++- .-+++ +.+++++.++..+.+...+... +.+++|.+++.|+|+=|-++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 01244 4455555444434443344332 5789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 014834 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~ga-iLi~a~G~ 214 (417)
..+...++.. .|. +|+++-|.
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9888877654 343 66666664
No 174
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.45 E-value=0.00031 Score=65.17 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=62.8
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----CceecCCCcC---CHHhhcC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLG---DIYETIS 177 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~---s~~Ea~~ 177 (417)
..+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+.++..+.+... +......... +..++++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 35678 99999996 99999999999988 888888887655444433322 2211000011 2347788
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++|+||.++|...+. ........+++.++++.
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADV 128 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEc
Confidence 999999999977651 11222234556677754
No 175
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.45 E-value=0.00037 Score=70.76 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=50.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
.||+|||+|+||..++..+.+. .+++++...+.+... ......++.. ..+.+++..+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999765 156765333332211 2222344432 35677788899999999998777
Q ss_pred HHHHH
Q 014834 192 ADNYE 196 (417)
Q Consensus 192 ~~Vl~ 196 (417)
.+...
T Consensus 74 ~~~~~ 78 (324)
T TIGR01921 74 IPEQA 78 (324)
T ss_pred HHHHH
Confidence 55443
No 176
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.42 E-value=0.00078 Score=68.73 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceec-----------C-C--CcCCHHhh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----------N-G--TLGDIYET 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~-----------~-~--~~~s~~Ea 175 (417)
|.||||+|+|.||+.+++.+.+. .+++++...+.... ....++..|+... + + ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46999999999999999998864 15676555543322 1223443342210 0 0 02356777
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999999888777643 3457777777763
No 177
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.00057 Score=70.83 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=71.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-------------------HHHHHHcC-ceecCCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-------------------~~~A~~~G-~~~~~~~~~s 171 (417)
.+|||||+|-+|.++|..+..+ |++|+ |.+.+++. .+.+.+.| +.. +.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~Vi-G~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKVI-GVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCceE-eEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7999999999999999999999 99875 55543322 23444555 332 455
Q ss_pred HHhhcCcCCEEEEccCCch----H------HHHHHHHHhcCCCCcEEEEec----Cch---hhhhhh--cccCCCCCccE
Q 014834 172 IYETISGSDLVLLLISDAA----Q------ADNYEKIFSCMKPNSILGLSH----GFL---LGHLQS--IGLDFPKNIGV 232 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~----~------~~Vl~eI~~~lk~gaiLi~a~----G~~---i~~~~~--~~i~~~~dv~V 232 (417)
.+++ +.||++++|||... + ....+.|.+.|++|++|++=+ |.+ +..+.+ .++.+++|+.+
T Consensus 79 ~~~l-~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 79 PEEL-KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred hhhc-ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 6554 58999999988321 1 123346999999999877443 442 112222 45666666543
No 178
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.40 E-value=0.00045 Score=71.20 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=66.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC--CcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--TLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~--~~~s~~Ea~~~ADIViLa 185 (417)
+.+ .+|.|||+|.+|...++.++.. |.+|++.+++..+....+...|...... ...++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 9888888776544333334444321000 012356788999999999
Q ss_pred cCC--chHHHHH-HHHHhcCCCCcEEEEec
Q 014834 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd--~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 2223333 45556789999888654
No 179
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.40 E-value=0.00015 Score=73.06 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=55.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++++|||+|.||..+++.+..-. ++ +|.|++|+.++..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 378999999999999999988751 34 788888875544443333 24332 12568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|......+++ ...++||+.|.-.+...
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 9765212332 23578898777555543
No 180
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.40 E-value=0.00056 Score=67.83 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=58.0
Q ss_pred CEEEEEcccchH-HHHHHHHHhhhhhhcCC--cE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEc
Q 014834 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG-~AiA~~Lr~s~~~~~~G--~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLa 185 (417)
.||||||+|.++ ..++..+++. + +. +.+.+++.++..+.+++.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 789999999555 5688888876 4 23 3344566666678888889851 16789998886 5999999
Q ss_pred cCCchHHHHHHH
Q 014834 186 ISDAAQADNYEK 197 (417)
Q Consensus 186 vpd~~~~~Vl~e 197 (417)
+|+..+.++...
T Consensus 75 tp~~~H~e~~~~ 86 (342)
T COG0673 75 TPNALHAELALA 86 (342)
T ss_pred CCChhhHHHHHH
Confidence 999999887743
No 181
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.40 E-value=0.001 Score=66.78 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH---cCceec-CC---CcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEE-NG---TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~---~G~~~~-~~---~~~s~~Ea~~~ADIVi 183 (417)
+||+|||.|.||..+|..|... |+ +|++.+.........+.+ .+.... .. ...+.++ +++||+||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEE
Confidence 6899999999999999999887 76 777776643321112110 010000 00 1246666 78999999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.+
T Consensus 75 itag 78 (305)
T TIGR01763 75 ITAG 78 (305)
T ss_pred EcCC
Confidence 9987
No 182
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.39 E-value=0.00038 Score=60.16 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcC----ceecCCCcC-CHHhhcCcCCEEEEc
Q 014834 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG----FTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G----~~~~~~~~~-s~~Ea~~~ADIViLa 185 (417)
||+||| .|.+|..+.+.|.+. ..++++ +..++.+.-.......+ +.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 134433 33343311112222221 111 0011 123445999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999888888776 4568788888774
No 183
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.39 E-value=0.00029 Score=69.03 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=60.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---CceecCCCcCCHHh-hcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~E-a~~~ADIVi 183 (417)
.++ +++.|||.|.+|.+++..|.+. |.+|.+.+|...+..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999998 888888888765555554442 2211 123333 346899999
Q ss_pred EccCCchHHHHHH-HH-HhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~-eI-~~~lk~gaiLi~a 211 (417)
.++|.....++-+ .+ ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754322100 01 2335667666644
No 184
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.38 E-value=0.00033 Score=73.22 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=62.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|..++..+.|.+.|... -.+.+..+.+.++|+||.+
T Consensus 175 ~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISS 245 (414)
T ss_pred cccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEe
Confidence 3788 9999999999999999999999 86 88999999889999999999543 1234567789999999999
Q ss_pred cCC
Q 014834 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
|.-
T Consensus 246 Tsa 248 (414)
T COG0373 246 TSA 248 (414)
T ss_pred cCC
Confidence 873
No 185
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.38 E-value=0.00044 Score=69.85 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHH---HcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~---~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-++++|||+|.||..+++.+..-. .+ +|.|++|..++..+.+. +.|+.. ..+.+.++++++||||+.+|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEec
Confidence 389999999999999999887641 23 78889888666544443 224432 11467899999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+... .+++ ...++||+.|.-.+.+..
T Consensus 201 ~s~~--P~~~--~~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 201 PSRE--PLLQ--AEDIQPGTHITAVGADSP 226 (315)
T ss_pred CCCC--ceeC--HHHcCCCcEEEecCCCCc
Confidence 8543 3442 235789998776665543
No 186
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.37 E-value=0.00051 Score=63.50 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.6
Q ss_pred hhccCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|+| ++|.|||.|.| |..+++.|... |.+|.+.+|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45888 99999999997 88899999998 88888777641 245678999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++.. ..++++.+|++.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999753 2321 1356777777543
No 187
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.27 E-value=0.00047 Score=68.02 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=56.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCc-CCHHhhcCcCCEEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~-~s~~Ea~~~ADIViL 184 (417)
.+++ +++.|||.|.+|.+++..|... | .+|++.+|+.++..+.+.+.+... .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 8999999999999999999988 8 589999998666555555443110 0001 133467789999999
Q ss_pred ccCCchH
Q 014834 185 LISDAAQ 191 (417)
Q Consensus 185 avpd~~~ 191 (417)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
No 188
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.25 E-value=0.0021 Score=64.22 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=61.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecC-ChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK-GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV-g~r~-~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.+|||||+|++|.-++..+.+. .++++.. .++. ++...+.+++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888754 1455543 3332 222346788888753 1346777775 5789999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEec
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+..+.+...... +.|+.|++-.
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECC
Confidence 999988776544 3577665443
No 189
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.24 E-value=0.0018 Score=64.81 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=47.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc-------Cc--eecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~-------G~--~~~~~~~~s~~Ea~~~AD 180 (417)
+||+|||+|.+|.++|..|... |+ ++++.++..++....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999988 74 7888887655444444331 11 11 12334 4578999
Q ss_pred EEEEccCC
Q 014834 181 LVLLLISD 188 (417)
Q Consensus 181 IViLavpd 188 (417)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999875
No 190
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.24 E-value=0.0019 Score=65.85 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhh-cCCcEEEEEecCC---hhhHHHHHH-----------cCceecC--CCcCCHHh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEEN--GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~-~~G~~ViVg~r~~---s~s~~~A~~-----------~G~~~~~--~~~~s~~E 174 (417)
.||+|||.||=|.++|+.+..+-.+. .+..+|..+.+.. .+...+.+- -|+.... -.+.|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 79999999999999999988762221 1223555543321 111111110 0111000 01568999
Q ss_pred hcCcCCEEEEccCCchHHHHHHHHHhcCCCCcE-EEEecCchh
Q 014834 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i 216 (417)
++++||+++..+|.+-...++++|..+++++.. |+.+-||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 668888854
No 191
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.22 E-value=0.0021 Score=64.74 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=64.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhcC-----cCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~~-----~ADIViL 184 (417)
.||||||+|++|..++..+.++ .++++....+.+. ...+.|++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888764 1455543333222 3346688888763 1356788774 5899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
++|...+.+......+ .|+.|++...
T Consensus 77 AT~a~~H~e~a~~a~e---aGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLRE---AGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHHH---cCCeEEECCc
Confidence 9999999888766543 5777775554
No 192
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.20 E-value=0.0008 Score=68.98 Aligned_cols=94 Identities=24% Similarity=0.257 Sum_probs=74.3
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
--+.| |++.|.|||-.|..+|+.|+.. |.+|+|..-.+-+ .-+|.-+||. +...+|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 34667 9999999999999999999988 9999988655333 4456668998 46899999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~ 215 (417)
|-...+ +. +-+..||+|++|.-++=|.
T Consensus 272 TGnkdV---i~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKDV---IRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcCc---cCHHHHHhccCCeEEecccccc
Confidence 987544 32 4556789999888665564
No 193
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.19 E-value=0.0018 Score=62.44 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=63.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC----hhh-------HHHHHHcCceecCCCcCC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~----s~s-------~~~A~~~G~~~~~~~~~s 171 (417)
..+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ ++. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35778 9999999999999999999988 87 488888872 221 33444443211 0136
Q ss_pred HHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+.++++++|+||-++|+.... +++...|.++.+|.+
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ 126 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFA 126 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEE
Confidence 778889999999999865543 233344556666553
No 194
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.001 Score=66.62 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=60.0
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|+| ++|.|||.|. +|..+|..|.+. |..|++..++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 46899 9999999998 999999999988 88888776531 256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-... +.. .++++|++|++.+
T Consensus 208 Avg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 9986432 322 3578999888665
No 195
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00054 Score=70.13 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=70.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH-HH-cCceecCCCcCCHHhh---cCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RA-AGFTEENGTLGDIYET---ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-~~-~G~~~~~~~~~s~~Ea---~~~ADIViLav 186 (417)
..||.||++.||+.+++|+.+. |+.|.+++|..++.-+.. .+ .|-.. -+ ..+++|. ++.--.|+|++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i-~g-a~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKI-IG-AYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcc-cC-CCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 999999999866543222 22 22221 01 3577775 46678999999
Q ss_pred CCchHH-HHHHHHHhcCCCCcEEEEec
Q 014834 187 SDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~~~~-~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+..... .+++++.|+|.+|.+|++-+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 977665 47788999999999988755
No 196
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.15 E-value=0.002 Score=65.71 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceec-CCCcCCHH-hhcCcCCEEEEcc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~-~~~~~s~~-Ea~~~ADIViLav 186 (417)
|+||+|||+ |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999997 99999999998865 14565443333222112222222 1100 00122222 2457899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+..+.++..++.. .|..|++.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99998888877643 5888887766
No 197
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.15 E-value=0.00094 Score=66.76 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=59.6
Q ss_pred hhccCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||.|+. |..++.-|... |..|++.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 35789 99999999988 99999999988 8888764321 2467788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++.. .++|+|++|++++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999433 3432 6789999888654
No 198
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.13 E-value=0.0025 Score=56.92 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc-------CceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~-------G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||. |+.|.++|..|... ++ ++.+.++...+....+.+. +... ....+..+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 59999999 99999999999988 65 6776766644333333321 1110 002245678899999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99986
No 199
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.13 E-value=0.012 Score=57.16 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC--C--------CcCCHHhhcCcCCEEEEccCCch
Q 014834 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~--~--------~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999998 9999888774 334444556754311 1 0112344 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCchh
Q 014834 191 QADNYEKIFSCMKPNSILG-LSHGFLL 216 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi-~a~G~~i 216 (417)
..++++.+.+++.++++|+ +.-|+..
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g~ 98 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLGH 98 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCCC
Confidence 9999999999999888655 5668753
No 200
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.12 E-value=0.0028 Score=64.04 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=45.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-------cC--ceecCCCcCCHHhhcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AG--FTEENGTLGDIYETIS 177 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-------~G--~~~~~~~~~s~~Ea~~ 177 (417)
.+. +||+|||.|+||.+++..|... |+ ++.+.+.+.+.....+.+ .+ ... ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 355 7999999999999999999887 74 766666654322221111 11 111 0023555 779
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+||++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999998
No 201
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.11 E-value=0.0011 Score=67.03 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=61.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||.+++..+.... ++ +|.+++|+.++..+.+++. |+.. ..+.+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 44 7888888766655555532 4431 11467889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
|... .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8643 23322 23678876653
No 202
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.11 E-value=0.0013 Score=69.99 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=53.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+++ ++++|||.|.+|.+++..|.+. |.+|++.+|...+..+.+...+.... ...+.. .+.++|+||.|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4567 8999999999999999999998 99888888875554445544432210 011222 257899999999
Q ss_pred CCch
Q 014834 187 SDAA 190 (417)
Q Consensus 187 pd~~ 190 (417)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
No 203
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0016 Score=67.73 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcC---cee--cCC-CcCCHHhhcCcCCEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---FTE--ENG-TLGDIYETISGSDLVL 183 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G---~~~--~~~-~~~s~~Ea~~~ADIVi 183 (417)
|++|-|||+|.+|.+.|..|.++ | .+|++.+|+.++.. ++.+.. +.. .|- ......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~~-~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKCA-RIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHHH-HHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 68999999999999999999988 7 79999999755433 333332 211 010 1123568899999999
Q ss_pred EccCCchHHHHHH
Q 014834 184 LLISDAAQADNYE 196 (417)
Q Consensus 184 Lavpd~~~~~Vl~ 196 (417)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
No 204
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.08 E-value=0.0062 Score=51.28 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=62.1
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh----hcCcCCEEEEccCCc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E----a~~~ADIViLavpd~ 189 (417)
|-|||+|.+|..+++.|++. +.+|++.++. ....+.+++.|+....|...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d-~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRD-PERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESS-HHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECC-cHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 8787766554 455778888886654333334322 368899999999987
Q ss_pred hHHHHH-HHHHhcCCCCcEEEEecCc
Q 014834 190 AQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 190 ~~~~Vl-~eI~~~lk~gaiLi~a~G~ 214 (417)
...-.+ ..+........++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 664333 3343333334455555543
No 205
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0038 Score=60.05 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=58.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHHcCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s---~~Ea-~~~ADIViLav 186 (417)
|+|.|||+|..|..+|+.|.+. |++|++.++..++..+. +.+.+.....+...+ ++++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 99988777765543332 323443321111122 4455 88999999999
Q ss_pred CCchHHHHHHHHH
Q 014834 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~~~~~Vl~eI~ 199 (417)
....+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
No 206
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0029 Score=65.80 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--------------CC---CcCCHHh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------~~---~~~s~~E 174 (417)
|||.|||.|-.|...+..|.+. |++|+..+.. +...+. ...|..+. ++ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~vDid-~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCVDID-ESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEEeCC-HHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 6899999999999999999999 9998655443 322222 12222110 01 1467889
Q ss_pred hcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEE
Q 014834 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 175 a~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+++++|++|||||... +..+.++|.++++..++|+.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~ 118 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI 118 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 9999999999987321 12466689999977676653
No 207
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.00 E-value=0.0039 Score=62.58 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--Cceec---CCCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~~~~---~~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|.+|.++|..|... |+ +|.+.++...+....+.+. ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 4899999999999999999988 84 6777776543322222221 11000 0001344 56899999999
Q ss_pred ccCC
Q 014834 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9874
No 208
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.00 E-value=0.0034 Score=51.14 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.3
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..+++ ++++|+|+|.||.+++..|.+. +. +|.+++| |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34677 9999999999999999999987 53 5665544 99999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998654421 2234456788877643
No 209
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.00 E-value=0.0042 Score=64.42 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=54.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s---~~Ea-~~~ADIViLav 186 (417)
|+|.|||+|.+|..+++.|++. |++|++.+++... .+.+++ .|+....+...+ .+++ ++++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~~-~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEER-LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHHH-HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 9988777665433 444433 454321111122 3445 78999999999
Q ss_pred CCchHHHHHH
Q 014834 187 SDAAQADNYE 196 (417)
Q Consensus 187 pd~~~~~Vl~ 196 (417)
++......+.
T Consensus 74 ~~~~~n~~~~ 83 (453)
T PRK09496 74 DSDETNMVAC 83 (453)
T ss_pred CChHHHHHHH
Confidence 9876654443
No 210
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.97 E-value=0.0039 Score=59.09 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=58.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.++| ++|.|||.|.+|...++.|.+. |.+|+|..+.-.+........| +..... ... ++.+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~~-~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EFE-PSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CCC-hhhcCCceEEEE
Confidence 46889 9999999999999999999999 8888877654333322222233 322111 111 345788999999
Q ss_pred ccCCchHHHHHHHHH
Q 014834 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~~~~~Vl~eI~ 199 (417)
+|.+......+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988876554443
No 211
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.96 E-value=0.003 Score=54.75 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG----~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|... ..+++|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 9887655443211 146554 6788884488999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+....++++++... ..+.+++..+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987653 344455555543
No 212
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.96 E-value=0.0051 Score=60.99 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhh-cCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIViLavpd~ 189 (417)
+||||||||.||..++..|.... ..++++...+++.. +..+.+ ..... +.+++++ ..+.|+|+=|-+++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~--~~~~~----~~~l~~ll~~~~DlVVE~A~~~ 73 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALA--GRVAL----LDGLPGLLAWRPDLVVEAAGQQ 73 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhh--ccCcc----cCCHHHHhhcCCCEEEECCCHH
Confidence 69999999999999999987530 00244433344432 222222 22333 6789996 68899999999988
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCc
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G~ 214 (417)
+..+..+.+.. .|. +++.+-|.
T Consensus 74 av~e~~~~iL~---~g~dlvv~SvGA 96 (267)
T PRK13301 74 AIAEHAEGCLT---AGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHHHh---cCCCEEEEChhH
Confidence 88887776643 344 45555554
No 213
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.95 E-value=0.0026 Score=67.14 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
++|+|||. |+.|.-+.++|++. |+ +|+..+.+. . .-.|+.. ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~~-~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPKA-G-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCCC-C-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999998 87 554333321 1 2357764 66888888888999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+|+....++++++.. ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999988655 34456788999985
No 214
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.0048 Score=62.33 Aligned_cols=126 Identities=21% Similarity=0.155 Sum_probs=87.0
Q ss_pred cccccccchHhhhhhcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.+-|-++-+.|--+|-|-.|-++-+= ... --.-+.| |.+.|.|||..|..-|+.||.. |..|+|.....-
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~Dgi--kra-TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDPI 248 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLLDGI--KRA-TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDPI 248 (434)
T ss_pred eeccchhhhhhccccccchhhhhhhh--hhh-hhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCch
Confidence 55666776666666666555432200 011 1134566 8888999999999999999988 888888754432
Q ss_pred hhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 152 ~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
.. -.|.-.|+. +.+++|+++++||++.++-...+ +..+.+..||.++||.-.+=|.
T Consensus 249 ~A-LQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 249 CA-LQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HH-HHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 33 334456888 57899999999999999876544 3346677899999988555443
No 215
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.94 E-value=0.0054 Score=62.14 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=43.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhh----HHHHHH---cC--ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARA---AG--FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s----~~~A~~---~G--~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|+||.++|..+... |+ ++++.+...+.. .+.... .+ .... ...+. +.+++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999998887 76 766666544322 111111 11 1110 12455 57899999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99965
No 216
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.92 E-value=0.002 Score=66.71 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc-----C---ceecCCCcCCHHhhcCcCC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----G---FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~-----G---~~~~~~~~~s~~Ea~~~AD 180 (417)
+-++++|||+|.||..+++.+..-. ..+ +|.|++|..++..+.+.+. | +.+ +.+.+|++++||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~AD 225 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGSD 225 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCCC
Confidence 4489999999999999999987641 023 7888888866554444332 3 332 578999999999
Q ss_pred EEEEccCCchH----HHHHHHHHhcCCCCcEEE
Q 014834 181 LVLLLISDAAQ----ADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 181 IViLavpd~~~----~~Vl~eI~~~lk~gaiLi 209 (417)
||+.+|+.... ..+++ ...++||+.|.
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred EEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 99999974321 12332 23578998765
No 217
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.92 E-value=0.0021 Score=63.80 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=55.9
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIV 182 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+....-.... +..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 3577 8999999999999999999998 87 78899998777666666543210000011 233556889999
Q ss_pred EEccCCch
Q 014834 183 LLLISDAA 190 (417)
Q Consensus 183 iLavpd~~ 190 (417)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
No 218
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.91 E-value=0.0014 Score=54.64 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd~ 189 (417)
.+|.|+|+|+.|.+++..+.+. . |+.+....+.+.+..- .+-.|+.+ ..+++++.+. .|+-+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 5543333332222111 01135554 3477776665 99999999998
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEecC
Q 014834 190 AQADNYEKIFS-CMKPNSILGLSHG 213 (417)
Q Consensus 190 ~~~~Vl~eI~~-~lk~gaiLi~a~G 213 (417)
...++..++.. .+|. ++.++.|
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~~ 96 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTPG 96 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESSS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCCC
Confidence 88887776543 3432 5556543
No 219
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.86 E-value=0.0029 Score=63.11 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=58.0
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||.|. .|.+++..|.+. |..|.+.+++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46889 9999999998 999999999988 8888877652 1245566789999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++... .+. .+.+++|++|+++.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996222 232 24578999888653
No 220
>PRK11579 putative oxidoreductase; Provisional
Probab=96.84 E-value=0.0074 Score=61.01 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=50.8
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|.+|. .++..+... .+++++...+.+... .+.+. +... ..+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466766654 156665333333221 12233 3322 578999985 5799999999
Q ss_pred CchHHHHHHHH
Q 014834 188 DAAQADNYEKI 198 (417)
Q Consensus 188 d~~~~~Vl~eI 198 (417)
+..+.++....
T Consensus 74 ~~~H~~~~~~a 84 (346)
T PRK11579 74 NDTHFPLAKAA 84 (346)
T ss_pred cHHHHHHHHHH
Confidence 99998877654
No 221
>PRK10206 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0062 Score=61.90 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 111 INQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
|-||||||+|.++. .++..+.... .++++....+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999764 4455553320 04565433333333335555565321 1568999985 5799999999
Q ss_pred CchHHHHHHHHH
Q 014834 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~~~~~Vl~eI~ 199 (417)
+..+.++..+..
T Consensus 74 ~~~H~~~~~~al 85 (344)
T PRK10206 74 ADSHFEYAKRAL 85 (344)
T ss_pred chHHHHHHHHHH
Confidence 999988776543
No 222
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.72 E-value=0.0077 Score=61.53 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceec--CCCc--CCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~--~~~~--~s~~Ea~~~ADIViLa 185 (417)
+||+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +-.+ .+.++..+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 48999998 99999999999864 134555 323221111111111221000 0001 2456666789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....++..++.. .|..|++.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888877643 57878877663
No 223
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.71 E-value=0.006 Score=60.72 Aligned_cols=64 Identities=30% Similarity=0.284 Sum_probs=41.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHH---Hc----C--ceecCCCcCCHHhhcCcCCEEE
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----G--FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~---~~----G--~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
|+|||.|+||..+|..|... |+ +|++.+...+.....+. .. + ... ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999999877 66 88777765432211111 11 1 011 012344 5689999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
No 224
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.70 E-value=0.0063 Score=60.90 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=59.3
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||.|. .|.+++.-|.+. |..|++..+. +.++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 9999999998 999999999988 8888877542 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++++|++|++++
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953222 21 15678999888754
No 225
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0067 Score=61.46 Aligned_cols=143 Identities=20% Similarity=0.099 Sum_probs=86.0
Q ss_pred cccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCCcCCH
Q 014834 95 RGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDI 172 (417)
Q Consensus 95 r~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~~~s~ 172 (417)
++|+--+--+.-.... -||.|||.|-.|..-|+-...- |-+|.+.+++..+....-...+.... -.+...+
T Consensus 153 ~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~i 225 (371)
T COG0686 153 NGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNI 225 (371)
T ss_pred cCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHH
Confidence 4444444433222233 5899999999999988866654 77999988775554443333443311 1122357
Q ss_pred HhhcCcCCEEEEc--cCCchHHH-HHHHHHhcCCCCcEEEEec----Cc-hhhhhhhcccCCC---CCccEEEeccCCCc
Q 014834 173 YETISGSDLVLLL--ISDAAQAD-NYEKIFSCMKPNSILGLSH----GF-LLGHLQSIGLDFP---KNIGVIAVCPKGMG 241 (417)
Q Consensus 173 ~Ea~~~ADIViLa--vpd~~~~~-Vl~eI~~~lk~gaiLi~a~----G~-~i~~~~~~~i~~~---~dv~VI~v~Pntpg 241 (417)
+|.+.++|+||-+ +|-...+. +.++....||||++|++.+ |. ...+.. .-.-| ++--+--+-||+|+
T Consensus 226 ee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~T--Th~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 226 EEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPT--THDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred HHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccc--cCCCCceeecCEEEEecCCCCc
Confidence 8999999999975 55555565 4457888999999988554 42 111110 00101 11123346799999
Q ss_pred hhHHH
Q 014834 242 PSVRR 246 (417)
Q Consensus 242 ~~vr~ 246 (417)
.+-|.
T Consensus 304 aVprT 308 (371)
T COG0686 304 AVPRT 308 (371)
T ss_pred cccch
Confidence 98543
No 226
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.66 E-value=0.12 Score=50.65 Aligned_cols=214 Identities=12% Similarity=0.144 Sum_probs=127.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----------hHHHHHHcCceec----------CCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE----------NGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----------s~~~A~~~G~~~~----------~~~~~s 171 (417)
.||+|+|-|..|+++|.-+..+ |++|..++...++ ..++.++.|.-.. -+.+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999988 9999887765331 1222233333210 023568
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi~a~G-~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+.|++++|=.|-=|+|..-. ..+|.++-..+.|.+||.-+.. |....+-. .+-+.-.++.+||--|-.-+.
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPPyfiP--- 151 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPPYFIP--- 151 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCCcccc---
Confidence 99999999888889996554 3577766666667666653322 22222211 112234688899966654310
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhh-hccccchhhhchHHHHHH------HHH
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKS-DIFGERGILLGAVHGIVE------SLF 321 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~-dl~ge~t~L~G~~pA~ie------a~~ 321 (417)
..- +.|+.-.+++..+...+|...+|-..+ +.+.|..- .+=-.|-++|+-.-.++. .-.
T Consensus 152 ----------LvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 152 ----------LVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred ----------hhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 112 455666678999999999999995311 11111110 000111122221111221 235
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH---HHHHHHHH
Q 014834 322 RRFTENGMSEDLAYKNTVECIT---GIISKIIS 351 (417)
Q Consensus 322 d~~v~~Gl~~e~A~~~~~q~~~---~g~~~li~ 351 (417)
|.-..+|+-+-.|+.-.+||++ .|.++...
T Consensus 218 D~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~ 250 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAHLNAEGVADYFK 250 (313)
T ss_pred HHHHhcCCCcchhcccchhhhhcCcHHHHHHHH
Confidence 6677899999999999999988 34444443
No 227
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.65 E-value=0.013 Score=59.23 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--------CceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--------G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||+|.+|.++|..|... |+ ++.+.+...+.....+.+. .... ..+..+.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCCCCE
Confidence 7999999999999999999988 77 6777776544332222221 1111 1223456899999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 77 vIita 81 (315)
T PRK00066 77 VVITA 81 (315)
T ss_pred EEEec
Confidence 99964
No 228
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.63 E-value=0.0045 Score=71.50 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=55.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhc---------CCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHh---h
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYE---T 175 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~---------~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~E---a 175 (417)
+.+++|+|||+|.||..++..|.+. .+.. .+..|.|+++...+..+.+... ++....-.+.+.++ +
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 3458999999999999999999865 1000 0123667766544434444433 42110000335444 4
Q ss_pred cCcCCEEEEccCCchHHHHHHH
Q 014834 176 ISGSDLVLLLISDAAQADNYEK 197 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~e 197 (417)
++++|+|+.|+|+..+.++...
T Consensus 646 v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHH
Confidence 4689999999999988887764
No 229
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.55 E-value=0.011 Score=63.62 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=65.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--C----C-------CcCC-------
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-------TLGD------- 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~----~-------~~~s------- 171 (417)
.|+.|||+|.+|...++.++.. |..|++.+++. ...+.++..|.... + + +..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~~-~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 6999999999999999999988 88887776654 45677777776520 0 0 0001
Q ss_pred ---HHhhcCcCCEEEEcc--CCchHHH-HHHHHHhcCCCCcEEEEec
Q 014834 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ---~~Ea~~~ADIViLav--pd~~~~~-Vl~eI~~~lk~gaiLi~a~ 212 (417)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578999999987 2221223 3345677899999988654
No 230
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.50 E-value=0.009 Score=54.47 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=58.9
Q ss_pred cccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
||.. -.|+| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+......+....+ .... +-++++|
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l~~l~~i~~~~~-~~~~-~dl~~a~ 72 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEMKELPYITWKQK-TFSN-DDIKDAH 72 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHHHhccCcEEEec-ccCh-hcCCCce
Confidence 5554 67899 9999999999999999999999 9988776432 2222222112222111 1122 2368899
Q ss_pred EEEEccCCchHHHHHHHHHh
Q 014834 181 LVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~ 200 (417)
+||.+|.+......+.....
T Consensus 73 lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 73 LIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 99999999887766555443
No 231
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.49 E-value=0.02 Score=51.48 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=50.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEccCC
Q 014834 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLavpd 188 (417)
|.|+|. |.+|..+++.|.+. |++|++..|+.++..+ ..++....+.+.+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689995 99999999999999 9999988888654433 4455433333444 45778899999999985
No 232
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.49 E-value=0.0062 Score=62.38 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
..++| ++|.|+|. |.||..+++.|... .|. ++++.+|...+..+.+.+.+.. ...+.++++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999999 89999999999743 043 7777777655555555554311 1346788999999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
.++...... +++. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 998743221 1111 2346777777543
No 233
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.49 E-value=0.024 Score=57.30 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=43.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----cCceecCC-C-cCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG-T-LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~G~~~~~~-~-~~s~~Ea~~~ADIVi 183 (417)
.||+|||+|.+|.++|..|... |+ ++.+.+.+.+.....+.+ ..+..... . ..+.++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999887 66 666666544332222222 21110000 0 245655 79999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 953
No 234
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.44 E-value=0.017 Score=62.28 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=54.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccCC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavpd 188 (417)
+|-|+|+|.+|..+++.|++. |+++++-+.+ ++..+.+++.|.....|...+.+ .-++++|.+++++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d-~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA------GIPLVVIETS-RTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 799999999999999999999 9988776654 45567777888654333333332 125799999999998
Q ss_pred chHH
Q 014834 189 AAQA 192 (417)
Q Consensus 189 ~~~~ 192 (417)
+...
T Consensus 492 ~~~~ 495 (558)
T PRK10669 492 GYEA 495 (558)
T ss_pred hHHH
Confidence 7654
No 235
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.39 E-value=0.012 Score=53.03 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+..++ ..++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999988 8888776432 1256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
++.-.. +++ ...+|||++|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vid 98 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVIN 98 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEE
Confidence 998652 232 345899998774
No 236
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0077 Score=60.21 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHH--hhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~--Ea~~~ADIVi 183 (417)
..+| ++|.|+|.|=.+.|++..|.+. |. +|+|.+|+.++..+++...+-........... +...++|+||
T Consensus 123 ~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliI 195 (283)
T COG0169 123 DVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLI 195 (283)
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEE
Confidence 4457 9999999999999999999999 96 79999998777777776654110000011111 2222699999
Q ss_pred EccCCchHHHH----HHHHHhcCCCCcEEE
Q 014834 184 LLISDAAQADN----YEKIFSCMKPNSILG 209 (417)
Q Consensus 184 Lavpd~~~~~V----l~eI~~~lk~gaiLi 209 (417)
.+||....... +. ...++++.++.
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~ 223 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVY 223 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEE
Confidence 99997665431 21 34456666665
No 237
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.37 E-value=0.032 Score=57.85 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--CceecCCCcCCHH----hhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~~~~~~s~~----Ea~~~ADIViLa 185 (417)
++|.|||+|.+|..+++.|.+. |++|++.++..+ ..+...+. ++....|...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~-~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPE-RAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8999999999999999999998 999877766543 34444332 4322112222322 246789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++....-+...+...+.+..+++.+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 99765433333344445555555543
No 238
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.37 E-value=0.02 Score=48.31 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=49.6
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++| ++|.|||.|.+|..=++.|.+. |.+|+|..... + ..+..+... -...++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~-~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----E-FSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----H-HHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----h-hhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4688 9999999999999999999999 99888776543 1 111223221 123456688999999999
Q ss_pred CCchHHHHH
Q 014834 187 SDAAQADNY 195 (417)
Q Consensus 187 pd~~~~~Vl 195 (417)
.+....+-+
T Consensus 69 ~d~~~n~~i 77 (103)
T PF13241_consen 69 DDPELNEAI 77 (103)
T ss_dssp S-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 997765433
No 239
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.35 E-value=0.019 Score=55.97 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=43.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHH-------c-CceecCCCcCCHHhhcCcCC
Q 014834 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~-------~-G~~~~~~~~~s~~Ea~~~AD 180 (417)
|+|||. |.+|..++..|... | .++.+.+...++....+.+ . ..... ...+..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999988 7 4777776554322221111 1 11110 1345678899999
Q ss_pred EEEEcc
Q 014834 181 LVLLLI 186 (417)
Q Consensus 181 IViLav 186 (417)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
No 240
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.34 E-value=0.03 Score=53.01 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=60.9
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---Ch---------------hhHHHHH---H-cC
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEAR---A-AG 161 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~---~s---------------~s~~~A~---~-~G 161 (417)
+..|+. ++|+|||+|.+|..+|.+|... |+ ++++.++. .+ +....++ + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 577888 9999999999999999999998 87 56666543 11 0000000 0 00
Q ss_pred -cee--cCCCc--CCHHhhcCcCCEEEEccCCchHH-HHHHHHHhcCCCCcEEEEecCc
Q 014834 162 -FTE--ENGTL--GDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 162 -~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~-~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.. .+..+ .+..+.++++|+||-++-+.... .+++++...++. ..|+.++|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~-~~ii~~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKD-KYLIAASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCC-CcEEEEecc
Confidence 111 00001 12345788999999995333444 345667666654 344445665
No 241
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.33 E-value=0.01 Score=56.43 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=62.0
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc--CC----HHhhcCc
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~--~s----~~Ea~~~ 178 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.+.+.- +......... ...+ .+ +.+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~--~~~~~~~~~~--hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGI--QVFTRGESIR--HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcc--cccccccccc--cccccccchhhHHHHHhhh
Confidence 46899 999999988 7899999999988 888887754321 1111000000 0001 12 6789999
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
||+||.+++-.... +. ...+|+|++|++++-
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999965431 21 245789999988663
No 242
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.33 E-value=0.0065 Score=63.70 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=48.0
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCChhhHHHH-------HHcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------RAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-------~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
.||+|||.|++|.+.+. .|.... +-.|.+|+++++..++..... ...+....=..+.|.++++++||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence 48999999999998766 443210 111668887776543221111 1112110000145788999999999
Q ss_pred EEccCCchHHH
Q 014834 183 LLLISDAAQAD 193 (417)
Q Consensus 183 iLavpd~~~~~ 193 (417)
|.+++......
T Consensus 79 i~ai~~~~~~~ 89 (423)
T cd05297 79 INTIQVGGHEY 89 (423)
T ss_pred EEeeEecCccc
Confidence 99999755443
No 243
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.29 E-value=0.021 Score=62.55 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
.+|-|+|+|.+|..+++.|.+. |+++++-+. +.+..+.+++.|....-|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~-d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLER-DISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEEC-CHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 998876654 455677888888754323333332 13779999999999
Q ss_pred CchHHH-HHHHHHh
Q 014834 188 DAAQAD-NYEKIFS 200 (417)
Q Consensus 188 d~~~~~-Vl~eI~~ 200 (417)
|..... +...++.
T Consensus 474 d~~~n~~i~~~~r~ 487 (601)
T PRK03659 474 EPEDTMKIVELCQQ 487 (601)
T ss_pred CHHHHHHHHHHHHH
Confidence 977653 3333333
No 244
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.29 E-value=0.019 Score=52.81 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... ..+.++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 45899 999999998 5999999999999 8888765432 1256778899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... ++ ..++|+|++|++++
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--
T ss_pred eeccccc---cc--cccccCCcEEEecC
Confidence 9985332 22 34589999888765
No 245
>PRK04148 hypothetical protein; Provisional
Probab=96.28 E-value=0.045 Score=49.10 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=66.6
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~~ADIViLavp 187 (417)
++ ++|.+||+| -|.++|..|.+. |++|+..+ .++...+.+++.+.... ++.+...-+.-+++|+|--.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~ViaID-i~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVIVID-INEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEEEEE-CCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 789999999 899999999988 99986554 44556777887776432 2333345578899999999988
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8776655557777665444444
No 246
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.28 E-value=0.019 Score=58.27 Aligned_cols=118 Identities=10% Similarity=0.142 Sum_probs=81.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEcc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLav 186 (417)
.||-|-|. |.+|.-+++.+++. |-+|+.|..+.. .... ..|+.. ..+++|+.+. .|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 58899995 99999999999999 988887766533 2211 137665 6789999887 99999999
Q ss_pred CCchHHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH
Q 014834 187 SDAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 187 pd~~~~~Vl~eI~~-~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v 244 (417)
|+....+.+.+... .+ ..+|+++.||..............+-.+..+-||+||-..
T Consensus 97 Pa~~v~dai~Ea~~aGI--~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~ 153 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEI--PLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIK 153 (317)
T ss_pred CHHHHHHHHHHHHHcCC--CEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEc
Confidence 99999887776443 23 3478899999653211100011122345566799988653
No 247
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.28 E-value=0.022 Score=61.28 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=66.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCC-------------cCCH-
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI- 172 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~-------------~~s~- 172 (417)
.| .||.|||+|.+|...++.++.. |.+|++.+++ ....+.+++.|.... +.. ..+.
T Consensus 164 pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~-~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTR-PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEEeccccccccccchhhhcchhHH
Confidence 45 8999999999999999999988 8887766665 455788888887510 100 0010
Q ss_pred -------HhhcCcCCEEEEccCCch--HHHHH-HHHHhcCCCCcEEEEec
Q 014834 173 -------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 -------~Ea~~~ADIViLavpd~~--~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.+.++++|+||-++.-.. ...++ ++....||+|.+|++.+
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999976322 33443 67778899999877553
No 248
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.19 E-value=0.023 Score=57.76 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=45.6
Q ss_pred hhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHHc-CceecCCCc-CCHHhhcC
Q 014834 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAA-GFTEENGTL-GDIYETIS 177 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~~-G~~~~~~~~-~s~~Ea~~ 177 (417)
|..++. +||+|||. |++|.+++..|... +. ++.+.++... ...+..... .+...+.+. .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 355666 99999999 99999999999866 53 6666655211 111211101 112101011 12267899
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
++|+|+++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998754
No 249
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.18 E-value=0.022 Score=57.13 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=66.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.||.|.|. |++|..+.++|++. |+++++...+..-. .+-.|+.. ..+++|+-+. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999996 88999999999988 87633233322001 11257765 6788888776 8999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~ 217 (417)
....+++++... ..-..++++++||...
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999988654 2234578899999754
No 250
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.16 E-value=0.018 Score=54.62 Aligned_cols=105 Identities=12% Similarity=0.243 Sum_probs=63.6
Q ss_pred CCEEEEEcccchHHHHHHHH--HhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~L--r~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
+.++.|||+||+|+|++..- .+. |++++...+.+....-.. -.++.+ ....++++.++ +.|+.+|+|
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~-~~~v~V--~~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTK-IGDVPV--YDLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCcc-cCCeee--echHHHHHHHHhcCccEEEEEc
Confidence 36899999999999998632 234 777776666544322111 122332 11345666666 789999999
Q ss_pred CCchHHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEe
Q 014834 187 SDAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAV 235 (417)
Q Consensus 187 pd~~~~~Vl~eI~~-~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v 235 (417)
|-....++.+.+.. .+| .+|-|+.. + +..|+++.|.-+
T Consensus 155 Pa~~AQ~vad~Lv~aGVk--GIlNFtPv----~-----l~~pe~V~V~~i 193 (211)
T COG2344 155 PAEHAQEVADRLVKAGVK--GILNFTPV----R-----LQVPEGVIVENI 193 (211)
T ss_pred cHHHHHHHHHHHHHcCCc--eEEeccce----E-----ecCCCCcEEEEe
Confidence 98777777776433 332 25555543 2 355776655543
No 251
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.15 E-value=0.0069 Score=57.45 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd~ 189 (417)
++|+|||+|.+|.+++..+... + .|++++...+.+....... -.|+.. ....++.+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 2777664444332211100 123322 113456677654 99999999999
Q ss_pred hHHHHHHHHH
Q 014834 190 AQADNYEKIF 199 (417)
Q Consensus 190 ~~~~Vl~eI~ 199 (417)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
No 252
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.09 E-value=0.035 Score=52.24 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=52.0
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 014834 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIViLavpd 188 (417)
|.|+|. |.+|.+++..|.+. +++|.+..|+.++ ..+..++.|+........ ++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999998 9999888887543 334556677754222233 355689999999999993
No 253
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.08 E-value=0.02 Score=58.63 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=51.1
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-EEEEEecCChhhHHHHHH-c--CceecCCCcCC---HHhhcCcCCEEEEc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G-~-~ViVg~r~~s~s~~~A~~-~--G~~~~~~~~~s---~~Ea~~~ADIViLa 185 (417)
|.|||+|.+|..+++.|.+. + . +|++++|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999988 5 4 788888876554444432 1 22211001222 55789999999999
Q ss_pred cCCchHHHHHHH
Q 014834 186 ISDAAQADNYEK 197 (417)
Q Consensus 186 vpd~~~~~Vl~e 197 (417)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666654
No 254
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.016 Score=58.15 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.5
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-| ..|.++|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 46889 999999999 9999999999988 8888776321 1245678899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9975433 22 23568999988754
No 255
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.01 E-value=0.05 Score=51.71 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=57.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.|+| ++|.|||.|.+|..-++.|.+. |.+|+|......+.. +.+.+..+....+.. . .+.+.++|+||.
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEE
Confidence 35889 9999999999999999999999 988887765433333 333332343211221 2 344689999999
Q ss_pred ccCCchHH-HHHHHH
Q 014834 185 LISDAAQA-DNYEKI 198 (417)
Q Consensus 185 avpd~~~~-~Vl~eI 198 (417)
++.+.... .++...
T Consensus 76 at~d~~ln~~i~~~a 90 (205)
T TIGR01470 76 ATDDEELNRRVAHAA 90 (205)
T ss_pred CCCCHHHHHHHHHHH
Confidence 99987553 444433
No 256
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.01 E-value=0.021 Score=57.00 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.+ ..|.+++.-|... |..|.+..++ ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 46899 999999999 9999999999887 8888776542 1256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-. .++. ..++|||++|++.+
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2232 12369999988765
No 257
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.99 E-value=0.041 Score=51.92 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=54.8
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHHHHHH---c-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA---A- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~~A~~---~- 160 (417)
++-|+. +||.|||+|.+|..++++|... |+ ++.+.++.. .+....++. .
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 477888 9999999999999999999998 87 666655431 111111111 1
Q ss_pred -Ccee--cCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+.. .+..+. +..+.++++|+||.++-.......+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 011111 24567889999999986655555565543
No 258
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.98 E-value=0.027 Score=56.42 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=77.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.+|.|.| .|.+|..+-.+|+.. |.+++.+..+. +.. .+-.|+.. ..+++|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~~--~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KGG--TTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CCc--ceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 5799999 689999999999998 88855554432 111 12357775 6788887775 6999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
....+++++... ..-..++++++||.... ++.....-..-.+-.+-||+.|..
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~~-~~~l~~~a~~~girilGPNc~Gii 126 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVHD-MLKVKRYMEESGTRLIGPNCPGII 126 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHcCCEEECCCCceEE
Confidence 999999988654 22345788999996431 111111111223444457776654
No 259
>PRK05442 malate dehydrogenase; Provisional
Probab=95.94 E-value=0.059 Score=54.87 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=42.5
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCh------hhHHHHHHc-----CceecCCCcC
Q 014834 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLG 170 (417)
Q Consensus 110 gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s------~s~~~A~~~-----G~~~~~~~~~ 170 (417)
.+.||+|||+ |++|.++|..|... ++ ++.+.+.... ...+..... .... ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~ 72 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TD 72 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ec
Confidence 4579999998 99999999988775 43 4555554321 112222111 1121 23
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+..+.+++||+||++-
T Consensus 73 ~~y~~~~daDiVVita 88 (326)
T PRK05442 73 DPNVAFKDADVALLVG 88 (326)
T ss_pred ChHHHhCCCCEEEEeC
Confidence 4567889999999874
No 260
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.92 E-value=0.037 Score=56.62 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=49.5
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceec-----------C-C--CcCCHHhhcCc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----------N-G--TLGDIYETISG 178 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~-----------~-~--~~~s~~Ea~~~ 178 (417)
|||+|+|.+|..+++.+... .+++++..++.+.. ....|...|+... + + ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 15676544443322 1234443332110 0 0 03468889999
Q ss_pred CCEEEEccCCchHHHHH
Q 014834 179 SDLVLLLISDAAQADNY 195 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl 195 (417)
+|+|+.|+|......-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987765433
No 261
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.88 E-value=0.049 Score=54.96 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhH----HHHHHcCceec-C-CCcCCHHhhcCcCCEEEE
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF----AEARAAGFTEE-N-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~----~~A~~~G~~~~-~-~~~~s~~Ea~~~ADIViL 184 (417)
||+|||.|.+|.++|..|... ++ ++.+.+...++.. ++....-+... + .......+.+++||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 799999999999999999887 76 5666665433322 22221111100 0 001123467899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 743
No 262
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.88 E-value=0.085 Score=55.98 Aligned_cols=70 Identities=17% Similarity=0.034 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcC--Cc--EEEEEecCChhhHHHHHH--cC-------ceecCCCcCCHHhhcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~--G~--~ViVg~r~~s~s~~~A~~--~G-------~~~~~~~~~s~~Ea~~ 177 (417)
-||+|||. |++|.++|..|.... =+|. ++ ++++.++..++....+.+ ++ +.. ..+..+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~-v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i----~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGE-VFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI----GIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc-cccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE----ecCCHHHhC
Confidence 68999999 999999999887530 0000 22 555555544433322222 11 111 134557889
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+||+.-
T Consensus 176 daDiVVitA 184 (444)
T PLN00112 176 DAEWALLIG 184 (444)
T ss_pred cCCEEEECC
Confidence 999999974
No 263
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.85 E-value=0.045 Score=60.23 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=56.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
++|-|+|+|.+|..+++.|++. |+++++-+. +....+.+++.|.....|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~-d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDH-DPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEEEC-CHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999999 988776554 455677778888765333333332 23669999999999
Q ss_pred CchHHH
Q 014834 188 DAAQAD 193 (417)
Q Consensus 188 d~~~~~ 193 (417)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876653
No 264
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.81 E-value=0.03 Score=53.84 Aligned_cols=79 Identities=16% Similarity=0.026 Sum_probs=47.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----------hhHHHHHHcCceec-CC-CcCCHH
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE-NG-TLGDIY 173 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----------~s~~~A~~~G~~~~-~~-~~~s~~ 173 (417)
..++| ++|+|.|+|+.|...|+.|.+. |..++...+.+. ...+...+.+-... .. ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46789 9999999999999999999998 885544334333 33444433332210 00 001112
Q ss_pred hh-cCcCCEEEEccCCchH
Q 014834 174 ET-ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 174 Ea-~~~ADIViLavpd~~~ 191 (417)
+. -.+||+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 1378888888775533
No 265
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.029 Score=58.29 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=43.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++|.|||+|.+|.++|+.|++. |.+|++.++.... .... +... +......+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~~-~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLEA-LQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCccc-cchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999999 9988766654322 1111 1110 000123334457899999987544
No 266
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.042 Score=55.15 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.++ .|.+++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 46889 9999999998 999999999988 8888776521 2357788899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++--.. .+. ..++++|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 765322 221 23678999988754
No 267
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.71 E-value=0.028 Score=55.99 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=51.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCC---hhhHHHHHHc---C--ceecCCCcC---CHHh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~---s~s~~~A~~~---G--~~~~~~~~~---s~~E 174 (417)
.++| +++.|+|.|-+|.+++..|.+. |.. |.+.+|+. ++..+.+++. + .....-... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3567 8999999999999999999988 985 88888875 3433433322 1 110000011 2234
Q ss_pred hcCcCCEEEEccCCchH
Q 014834 175 TISGSDLVLLLISDAAQ 191 (417)
Q Consensus 175 a~~~ADIViLavpd~~~ 191 (417)
.++.+|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56678999999987543
No 268
>PLN02602 lactate dehydrogenase
Probab=95.68 E-value=0.085 Score=54.29 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=42.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----cC----ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AG----FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~G----~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|++|.++|..|... ++ ++.+.+...+.....+.+ .. .... ...+.+ .+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy~-~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDYA-VTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCHH-HhCCCCE
Confidence 5999999999999999999887 66 566666543322222221 11 1110 012444 4899999
Q ss_pred EEEc
Q 014834 182 VLLL 185 (417)
Q Consensus 182 ViLa 185 (417)
||++
T Consensus 109 VVit 112 (350)
T PLN02602 109 CIVT 112 (350)
T ss_pred EEEC
Confidence 9998
No 269
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.67 E-value=0.035 Score=53.66 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEe
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGL 147 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~ 147 (417)
..++| ++|+|.|+|++|...++.|.+. |..|+ |.+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D 62 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSD 62 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 56788 9999999999999999999998 98876 443
No 270
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.64 E-value=0.037 Score=56.20 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCChh--h----HHHHHHc-----CceecCCCcCCH
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--S----FAEARAA-----GFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s~--s----~~~A~~~-----G~~~~~~~~~s~ 172 (417)
+||+|||+ |++|.++|..|... |+ ++.+.+..... . .+..... .+.. ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999999876 54 46555553221 1 1111111 1111 2345
Q ss_pred HhhcCcCCEEEEcc
Q 014834 173 YETISGSDLVLLLI 186 (417)
Q Consensus 173 ~Ea~~~ADIViLav 186 (417)
.+.+++||+||++-
T Consensus 73 ~~~~~daDivvita 86 (322)
T cd01338 73 NVAFKDADWALLVG 86 (322)
T ss_pred HHHhCCCCEEEEeC
Confidence 57889999999973
No 271
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.035 Score=55.59 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999999 8999999999988 8888765321 1256778999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---cC--HHHcCCCcEEEEee
Confidence 9975332 22 34578999988754
No 272
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.59 E-value=0.052 Score=55.69 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC---
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp--- 187 (417)
.||||||+ .+|..++..+++. .+ +++++ |.++..++..+.|+++|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 58999999 5799999999875 00 34543 44555566778888899864 6899999988888888774
Q ss_pred -CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 -DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 -d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45666666543 34565433
No 273
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.59 E-value=0.015 Score=53.01 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC------------------
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~------------------ 166 (417)
+..+.. .+|.|+|.|+.|..-+.-+..- |.+|++.+... ...+.....+.....
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERP-ERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSH-HHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCH-HHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344455 7999999999999999998887 99988776653 333444444432100
Q ss_pred ----CCcCCHHhhcCcCCEEEEc--cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 014834 167 ----GTLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 167 ----~~~~s~~Ea~~~ADIViLa--vpd~~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.....+.+.++.+|+||.. .|+...+.++. +-...|+++++|++.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0001245678899999963 55666677664 5677799999999764
No 274
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.55 E-value=0.04 Score=55.31 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=58.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|++...+ +.++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999976 7899999999988 8778765421 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 205 AvGkp~~---i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPHL---IT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999988754
No 275
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.52 E-value=0.041 Score=54.97 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=52.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCh---hhHHHHHHcCceecC-CCcCC------HHhh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s---~s~~~A~~~G~~~~~-~~~~s------~~Ea 175 (417)
.++| +++.|||.|-.+.|++..|... |. +|.|.+|..+ +..+.+...+..... -.+.+ +.+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3577 8999999999999999999887 87 7888998742 444555443210000 00112 2335
Q ss_pred cCcCCEEEEccCCchH
Q 014834 176 ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 176 ~~~ADIViLavpd~~~ 191 (417)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997553
No 276
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.51 E-value=0.043 Score=55.35 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999988 8888766321 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 232 34678999888764
No 277
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.50 E-value=0.085 Score=53.95 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=57.2
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------hhhH---HHHHH
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~---------------------s~s~---~~A~~ 159 (417)
++.|+. ++|.|||+|..|..+|.+|... |+ ++.+.++.. .+.. +..++
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 678888 9999999999999999999998 87 566555431 0111 11111
Q ss_pred --cCceec----CCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 --~G~~~~----~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.++... +-+..+.+++++++|+||.++-+.....++.++.
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 122210 1111235778999999999996655555666654
No 278
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.48 E-value=0.16 Score=46.33 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.9
Q ss_pred cCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC----h--hhH----HHHHHcCc--eecCCCcCCHHh
Q 014834 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (417)
Q Consensus 109 ~gmkkIgIIG--~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s--~s~----~~A~~~G~--~~~~~~~~s~~E 174 (417)
+| +||++|| .+++..|++..+..- |.++.+....+ . .-. +.+.+.|. .. +.+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999998 99876665443 1 112 22333443 33 578999
Q ss_pred hcCcCCEEEEccCC
Q 014834 175 TISGSDLVLLLISD 188 (417)
Q Consensus 175 a~~~ADIViLavpd 188 (417)
+++++|+|....-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999887555
No 279
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.061 Score=53.79 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.+++.-|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999977 7899999999988 8888766421 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.-... +. ..++|+|++|+++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEe
Confidence 9985432 22 3457899998876
No 280
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.41 E-value=0.13 Score=52.37 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--hhhHHHHHHc--Cc-eecCC--CcCCHHhhc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARAA--GF-TEENG--TLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~--s~s~~~A~~~--G~-~~~~~--~~~s~~Ea~ 176 (417)
.||+|||. |.+|.++|..|... ++ ++.+.+... ++....+.+. .. ....+ ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 566665532 1122222211 11 00000 013456788
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+||++-
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999973
No 281
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.41 E-value=0.046 Score=55.18 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=58.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|++.... +.++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999987 6899999999988 8888776321 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-. .++. ..++|+|++|++++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 98753 2332 34578999888654
No 282
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.41 E-value=0.047 Score=54.72 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=58.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.+++.-|.+. +..|++.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999987 6899999999988 8888765321 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999888754
No 283
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.40 E-value=0.074 Score=45.10 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH--HcCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHHH
Q 014834 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEK 197 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~--~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~-Vl~e 197 (417)
+-+..+++.|++. |.+|.+++..-........ ..++.. +.+.+++++++|.||++++-....+ -+++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~ 86 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDEEEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWEE 86 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHHHHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccChHHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHHH
Confidence 5677888888888 9998877655333222211 246664 5688999999999999999888876 5667
Q ss_pred HHhcCCCCcEEEEecCc
Q 014834 198 IFSCMKPNSILGLSHGF 214 (417)
Q Consensus 198 I~~~lk~gaiLi~a~G~ 214 (417)
+...|+++.+|++.-|+
T Consensus 87 ~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 87 IAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHSCSSEEEEESSST
T ss_pred HHHhcCCCCEEEECccc
Confidence 88888888889888764
No 284
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.051 Score=54.50 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=58.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|++...+ +.++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999988 8888766421 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9885332 22 34578999888754
No 285
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.38 E-value=0.063 Score=53.76 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=58.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+...+ +.++++.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 45899 999999977 7899999999988 8888766322 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985433 22 24578999988764
No 286
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.37 E-value=0.067 Score=53.52 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=42.9
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--Ccee-cCCC--cCCHHhhcCcCCEEEEcc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENGT--LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~~~-~~~~--~~s~~Ea~~~ADIViLav 186 (417)
|+|||+|.+|.++|..|... |+ ++.+.+...++....+.+. .... .... ..+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999988 75 6777766544333222221 1000 0000 112246889999999986
Q ss_pred C
Q 014834 187 S 187 (417)
Q Consensus 187 p 187 (417)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 5
No 287
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.32 E-value=0.053 Score=57.03 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=50.2
Q ss_pred hhccCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+-.++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45567 89999999999999 89999999 99998777553333333455687641 1223455678999988
Q ss_pred c
Q 014834 185 L 185 (417)
Q Consensus 185 a 185 (417)
.
T Consensus 73 s 73 (461)
T PRK00421 73 S 73 (461)
T ss_pred C
Confidence 5
No 288
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.27 E-value=0.095 Score=52.76 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=42.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--hhhHHHHH-------HcCc--eecCCCcCCHHhhcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~--s~s~~~A~-------~~G~--~~~~~~~~s~~Ea~~ 177 (417)
+||+|||. |..|..++..|... |+ +|++.++.. ++....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999988 76 476666632 11111110 1111 11 0 0124 45699
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999975
No 289
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.25 E-value=0.055 Score=54.14 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=58.8
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|.| +++.|||-++ .|..|++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 46789 9999999985 699999999998 8888776432 1356778899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++--... ++ .+++|+|++|++.+
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9874322 22 46789999988764
No 290
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.23 E-value=0.074 Score=53.43 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.6
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| |++.|||-+ ..|.+++.-|.+. +..|.+...+ +.++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999977 6899999999988 8888765421 23677889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+.-.. ++. ..++|+|++|++++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 88432 222 34578999888754
No 291
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.21 E-value=0.056 Score=55.43 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=44.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| ++|-|||.|-||.-.+++|++. |. +|++.+|.... ...+-. ....-+...++|+||.+
T Consensus 171 ~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 171 KSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFFG 233 (338)
T ss_pred CccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEEc
Confidence 4778 9999999999999999999999 86 68889987421 111100 00111334689999997
Q ss_pred c
Q 014834 186 I 186 (417)
Q Consensus 186 v 186 (417)
+
T Consensus 234 t 234 (338)
T PRK00676 234 S 234 (338)
T ss_pred C
Confidence 4
No 292
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.19 E-value=0.08 Score=53.03 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|+| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 46889 999999977 7899999999988 8888766432 1356677899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985433 22 24578999988754
No 293
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.08 Score=53.05 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=58.0
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|++.... +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35899 999999987 7899999999888 8888765432 1357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9885332 22 24578999988754
No 294
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.15 E-value=0.063 Score=53.85 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|++.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 35899 999999976 7899999999888 8888765321 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 997543 232 23568999988764
No 295
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.07 E-value=0.15 Score=51.40 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=52.2
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.++| .||++||-| ++..+++..+..- |++|.+.....- .-.+.+++.|.... ...++++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 3778 899999995 9999999999887 998887754321 22355666665421 146899999999
Q ss_pred CEEEEc
Q 014834 180 DLVLLL 185 (417)
Q Consensus 180 DIViLa 185 (417)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
No 296
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.088 Score=53.06 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=58.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 45889 999999977 7899999999988 8888765431 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 22 24578999988753
No 297
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.06 E-value=0.066 Score=54.39 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=40.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--hhhH----HHHHHc-----CceecCCCcCCHH
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~--s~s~----~~A~~~-----G~~~~~~~~~s~~ 173 (417)
||+|||+ |.+|..++..|... ++ ++.+.++.. +... +..... ++.. ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 8999999 99999999999876 43 365555543 2111 111110 1111 13566
Q ss_pred hhcCcCCEEEEc
Q 014834 174 ETISGSDLVLLL 185 (417)
Q Consensus 174 Ea~~~ADIViLa 185 (417)
+.+++||+||++
T Consensus 72 ~~~~~aDiVVit 83 (323)
T cd00704 72 EAFKDVDVAILV 83 (323)
T ss_pred HHhCCCCEEEEe
Confidence 889999999987
No 298
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.064 Score=56.88 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=52.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC-CHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViL 184 (417)
..+.+ ++|.|+|+|..|.++++.|++. |.+|.+.++......+...+.|+... .. ...+-+.++|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 45667 9999999999999999999999 99888777653333333455687641 11 22344678999988
Q ss_pred c--cCCc
Q 014834 185 L--ISDA 189 (417)
Q Consensus 185 a--vpd~ 189 (417)
. +|+.
T Consensus 81 Spgi~~~ 87 (473)
T PRK00141 81 SPGWRPD 87 (473)
T ss_pred CCCCCCC
Confidence 6 4543
No 299
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.98 E-value=0.13 Score=52.87 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=64.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcC--CEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A--DIViLavpd 188 (417)
-++||+|+|.|+.=.+++|.-. ++ +++.|+ |..++.+++.+.|+..++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 22 155543 45566667778888899831 23467899999877 999999999
Q ss_pred chHHHHHHHHHhc
Q 014834 189 AAQADNYEKIFSC 201 (417)
Q Consensus 189 ~~~~~Vl~eI~~~ 201 (417)
.++.++.-.++.+
T Consensus 83 ~qH~evv~l~l~~ 95 (351)
T KOG2741|consen 83 PQHYEVVMLALNK 95 (351)
T ss_pred ccHHHHHHHHHHc
Confidence 9998877654443
No 300
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.94 E-value=0.055 Score=54.00 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=53.0
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCC--CcCC---HHhhcCcCC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~--~~~s---~~Ea~~~AD 180 (417)
.+++ +++.|||.|-.|+|++-.|.+. |. +|.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 3567 8999999999999999999988 87 68888988666666665431000000 0112 233557899
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999999543
No 301
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.92 E-value=0.088 Score=54.40 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|.+...+ +.++.+.+++|||||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35789 999999977 7899999999988 8778765321 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9985332 22 34578999988653
No 302
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.92 E-value=0.092 Score=53.35 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhh-hcCCcEEEEEecCChhhHHHHHHcCcee------cCC-CcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAE-AKSDIVVKVGLRKGSRSFAEARAAGFTE------ENG-TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~-~~~G~~ViVg~r~~s~s~~~A~~~G~~~------~~~-~~~s~~Ea~~~ADIV 182 (417)
.||+|||. |.+|.+++..|.....- ...+.++.+.++........+....+.. .+- ...+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 48999999 99999999999875000 0002367766664321101111111110 000 024556889999999
Q ss_pred EEcc
Q 014834 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|++-
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9873
No 303
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.92 E-value=0.092 Score=53.57 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hh-hhcCCcEEE-EEecCC---------h-hhHHHHHHcCceec-CC--CcCCHH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKG---------S-RSFAEARAAGFTEE-NG--TLGDIY 173 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s---~~-~~~~G~~Vi-Vg~r~~---------s-~s~~~A~~~G~~~~-~~--~~~s~~ 173 (417)
.+|+|||+|+||..+++.|.+. +. ..+.+++|+ +.+++. . ...+.+.+.|.... .+ ...+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998764 11 112234443 334321 1 11122233332110 00 123677
Q ss_pred hhc--CcCCEEEEccCCchHH-HH-HHHHHhcCCCCcEEEE
Q 014834 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (417)
Q Consensus 174 Ea~--~~ADIViLavpd~~~~-~V-l~eI~~~lk~gaiLi~ 210 (417)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986552 22 2223455666775553
No 304
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.90 E-value=0.11 Score=52.11 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|.+.... +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 45899 999999977 7899999999888 7777765321 2356788899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvGk~~---~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKAE---LVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEee
Confidence 998422 332 34578999988754
No 305
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.89 E-value=0.095 Score=53.87 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=57.5
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++++.+++|||||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 35889 999999977 6899999999888 8777765322 1356788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9885432 22 34578999988754
No 306
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.86 E-value=0.074 Score=56.01 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=50.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----hHHHHHHcCceecCCCcCCHHhhcCcCCE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----s~~~A~~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
..+.+ ++|+|+|+|..|.++|+-|++. |++|.+.++.... ..+..++.|+....+ ....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence 56677 9999999999999999999999 9999887754321 113355668754111 122355678999
Q ss_pred EEEc
Q 014834 182 VLLL 185 (417)
Q Consensus 182 ViLa 185 (417)
||+.
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9886
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.12 Score=53.75 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=49.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH----HHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~----~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+++ |+|.|||.|.+|.++|+.|.+. |++|++.++...... +...+.|..... .....+....+|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999988877542222 222334654310 112234567899999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
No 308
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.79 E-value=0.11 Score=52.11 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=57.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHh--hhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~--s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
..++| |++.|||-+ ..|.+++.-|.+ . +..|.+.... +.++++.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 35789 999999976 789999999987 5 6677665321 23678889999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|.++.-.. ++. ..++|+|++|++++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99988543 222 34578999888754
No 309
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.76 E-value=0.085 Score=53.63 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=40.2
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCChhhHHHHHHcCceec-----CCC--cCCHHhhcC
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NGT--LGDIYETIS 177 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s~s~~~A~~~G~~~~-----~~~--~~s~~Ea~~ 177 (417)
||+|||. |.+|.+++..|... ++ ++.+.++........+........ .+. ..+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 365665532211111111110000 000 124467889
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+||++-
T Consensus 75 ~aDiVVitA 83 (324)
T TIGR01758 75 DVDVAILVG 83 (324)
T ss_pred CCCEEEEcC
Confidence 999999974
No 310
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.12 Score=54.61 Aligned_cols=69 Identities=28% Similarity=0.187 Sum_probs=48.9
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+++ ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+..++.|+... ..+..+....+|+||
T Consensus 14 ~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~Vv 83 (480)
T PRK01438 14 WQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLVV 83 (480)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEEE
Confidence 567 8999999999999999999998 999888775432 11234556787642 112112445799999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 84 ~s~ 86 (480)
T PRK01438 84 TSP 86 (480)
T ss_pred ECC
Confidence 875
No 311
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.69 E-value=0.21 Score=47.71 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=31.4
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
+..|+. .+|.|||+|.+|..++++|... |+ ++.+.+.
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 578888 9999999999999999999998 77 4555544
No 312
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.62 E-value=0.15 Score=52.34 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=57.0
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCH-HhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~-~Ea~~~ADIViLa 185 (417)
-.| ++|+|+|+|-.|.--.+-.+.. |.+|+..++++ ...+.|++.|.... +....+. +++-+.+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~~-~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRSE-EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCCh-HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999998887777777767 88988777764 44778888886431 1111112 2233339999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+++...... .+.|+++-.++
T Consensus 237 v~~~~~~~~----l~~l~~~G~~v 256 (339)
T COG1064 237 VGPATLEPS----LKALRRGGTLV 256 (339)
T ss_pred CChhhHHHH----HHHHhcCCEEE
Confidence 993322223 33455555544
No 313
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.61 E-value=0.094 Score=52.86 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.8
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46889 999999977 78999999987610000 5667655421 1356788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-. .++. ..++|+|++|++++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99643 3332 23458999988754
No 314
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=94.60 E-value=0.24 Score=44.08 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=64.5
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc-eeccchhhhhhhhccccchhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYKSDIFGERGIL-LGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 263 iav~~dvsgea~e~a~~L~~alG~~~-~iettf~~e~~~dl~ge~t~L-~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
|+++. +.++.+.+..|+..+|+.. .+. +....+||..+++ |+.+.+++....+.+.++|+++++|++...-
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~~~~i~-----~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~P 76 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGRPFEID-----SEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLP 76 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSEEEE-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCceEEeC-----HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 45555 6789999999999999853 233 3455579999876 8899999999999999999999998875544
Q ss_pred HHHHHHHHHHHHhcHHHHHhcccCch
Q 014834 341 CITGIISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 341 ~~~~g~~~li~e~G~~~l~~~vss~~ 366 (417)
-+. +..+-+.+.|. .+..+-|-
T Consensus 77 Li~-~t~~n~~~~g~---~~alTGP~ 98 (132)
T PF10728_consen 77 LIR-ETLENILQLGP---ADALTGPA 98 (132)
T ss_dssp HHH-HHHHHHHHS-H---HHH--SCC
T ss_pred HHH-HHHHHHHhcCc---hhccCCCc
Confidence 444 55666666554 36667773
No 315
>PRK15076 alpha-galactosidase; Provisional
Probab=94.56 E-value=0.08 Score=55.87 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=43.9
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCChhhHHHH--------HHcCc--eecCCCcCCHHhhcCc
Q 014834 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGF--TEENGTLGDIYETISG 178 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A--------~~~G~--~~~~~~~~s~~Ea~~~ 178 (417)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+...++ .+.+ ...+. .. ..+.|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid~er-~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDIDPER-LEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 579999999999976655 55421 01114477766654322 2211 11221 11 113567899999
Q ss_pred CCEEEEccCC
Q 014834 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADIViLavpd 188 (417)
||+||.++-.
T Consensus 76 ADfVv~ti~v 85 (431)
T PRK15076 76 ADYVINAIQV 85 (431)
T ss_pred CCEEeEeeee
Confidence 9999998765
No 316
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.51 E-value=0.24 Score=50.15 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=42.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecC--ChhhHHHHHHcC-ceecCCC--cCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENGT--LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~--~s~s~~~A~~~G-~~~~~~~--~~s~~Ea~~~ADIVi 183 (417)
+||+|||. |++|.++|..|... ++ ++++.+.+ .....+...... ... .+. ..++.+.+++||+||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i-~~~~~~~~~y~~~~daDivv 73 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKV-TGYLGPEELKKALKGADVVV 73 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceE-EEecCCCchHHhcCCCCEEE
Confidence 58999999 99999999999877 65 55555443 112222222211 111 000 122367899999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 74 ita 76 (310)
T cd01337 74 IPA 76 (310)
T ss_pred EeC
Confidence 874
No 317
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.49 E-value=0.3 Score=49.63 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=42.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--Cceec--CCC-cC-CHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--NGT-LG-DIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~--~~~-~~-s~~Ea~~~ADIViLa 185 (417)
+||+|||.|++|.+.|..|... +.+.++.+.+.......-.+.+. +.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999665 11336666665533222222211 11000 000 11 125678999999997
Q ss_pred c
Q 014834 186 I 186 (417)
Q Consensus 186 v 186 (417)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 5
No 318
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.47 E-value=0.41 Score=48.02 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=62.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--ChhhHHHHHHcCceecCCCcCCHHh--hcCcCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~--~s~s~~~A~~~G~~~~~~~~~s~~E--a~~~ADIViL 184 (417)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. .+...+.+++.|....+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 67 8999999999999999999988 8887776663 3455678888887531111011111 2245799999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.... .+.+....++++-.++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 987432 344555667777665543
No 319
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.43 E-value=0.19 Score=47.37 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=31.1
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. +||.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 578888 9999999999999999999999 87 455554
No 320
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.11 Score=54.57 Aligned_cols=67 Identities=28% Similarity=0.288 Sum_probs=47.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++..... ....+.|+... ..+. +-+.++|+||..
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~~-~~~~~~d~vv~s 72 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLRT-ADWSGFAALVLS 72 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCCh-hHHcCCCEEEEC
Confidence 4678 9999999999999999999998 99988776543322 22345677631 1122 335789998873
No 321
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.35 E-value=0.13 Score=51.82 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
..++| |+|.|||-+ ..|.+++.-|.+. | ..|.+...+ +.++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 46889 999999987 7899999999876 4 356554321 235778899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||.++.-... +. ..++|+|++|++++
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99999885432 22 34578999988754
No 322
>PRK05086 malate dehydrogenase; Provisional
Probab=94.35 E-value=0.3 Score=49.29 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh----HHHHHHc-CceecCCC-cCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGT-LGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s----~~~A~~~-G~~~~~~~-~~s~~Ea~~~ADIViL 184 (417)
|||+|||. |.+|.+++..|...+ +.+.++.+.++.. .. .+..... -... .+. ..++.+.++++|+||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~~-~~~g~alDl~~~~~~~~i-~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIAP-VTPGVAVDLSHIPTAVKI-KGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecCC-CCcceehhhhcCCCCceE-EEeCCCCHHHHcCCCCEEEE
Confidence 68999999 999999999885421 0133566555542 22 1221100 0111 000 1355678899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 76 taG 78 (312)
T PRK05086 76 SAG 78 (312)
T ss_pred cCC
Confidence 865
No 323
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.25 E-value=0.089 Score=52.82 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=56.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~----s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
..++| |++.|||-+ ..|.+++.-|.+ . +..|.+.... ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 46889 999999977 789999999987 5 5677665422 135778899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||.++.-.. ++. ..++++|++|++++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996433 232 23468999888654
No 324
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.24 E-value=0.28 Score=52.48 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---------------
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------- 161 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------------- 161 (417)
.++| +||+|+|+ .+-...++..|.+. |.+|.+++..-.. .+..+..+
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4788 99999998 56778888888888 9998877654221 11111121
Q ss_pred -------ceecCCCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 014834 162 -------FTEENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 162 -------~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~V-l~eI~~~lk~gaiLi~a~G~ 214 (417)
+.. +.+..+++++||+|++++.-....++ ++++.+.|++..+|++.-++
T Consensus 393 ~~~~~~~~~~----~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSV----VWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceee----eCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 121 34567899999999999998777653 55677777765577876665
No 325
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.22 E-value=0.31 Score=44.99 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~ 149 (417)
||.|||+|.+|..++++|... |+ ++.+.++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 689999999999999999998 87 46655543
No 326
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.17 E-value=0.25 Score=50.08 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=41.7
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHHcC-ceecCCCc-C-CHHhhcCcCCEEEE
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAG-FTEENGTL-G-DIYETISGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~~G-~~~~~~~~-~-s~~Ea~~~ADIViL 184 (417)
||+|||+ |++|.++|..|... ++ ++++.+.... ...+...... ... .+.. . +..+.+++||+||+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i-~~~~~~~~~~~~~~daDivvi 73 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASV-KGFSGEEGLENALKGADVVVI 73 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceE-EEecCCCchHHHcCCCCEEEE
Confidence 7999999 99999999999877 65 5665554321 1122221110 111 0000 1 23678999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 74 taG 76 (312)
T TIGR01772 74 PAG 76 (312)
T ss_pred eCC
Confidence 754
No 327
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.16 E-value=0.28 Score=49.97 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-cCceecCCCcC-CHH----hhc--CcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~-s~~----Ea~--~~ADIV 182 (417)
.++.|+|+|.+|.-.++.++.. |. +|++. +..+...+.|++ .|......... +.. +.. ..+|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 4899999999999988888887 86 55544 444566788888 55442100001 111 222 359999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
|-|+- ....+++....++++-.+++.
T Consensus 243 ie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999 334556666677777765533
No 328
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.16 E-value=0.12 Score=55.94 Aligned_cols=75 Identities=25% Similarity=0.193 Sum_probs=51.7
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh-cCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIViLav 186 (417)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... ...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEecc
Confidence 567 8999999999999999999998 98888888876655555555442210 01122222 23578888888
Q ss_pred CCchH
Q 014834 187 SDAAQ 191 (417)
Q Consensus 187 pd~~~ 191 (417)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 86543
No 329
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.10 E-value=0.15 Score=53.16 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=53.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceecC-CCcCCHH-hhcCcCCEEEEccC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~~-~~~~s~~-Ea~~~ADIViLavp 187 (417)
+||+|||. |..|..+.+-|.+. .++++....+..+.-.......- +...+ ....+.+ +.++++|+||+++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 79999997 89999999987765 13465544433211100011110 00000 0011222 22588999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.....++.+.+ +.|..|++.++.
T Consensus 114 ~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 114 HGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHHHH----hCCCEEEEcCch
Confidence 87666666553 457778877764
No 330
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.08 E-value=0.3 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s 133 (417)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999877
No 331
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.07 E-value=0.26 Score=46.44 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 577888 9999999999999999999999 87 455554
No 332
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.04 E-value=0.35 Score=46.43 Aligned_cols=83 Identities=17% Similarity=0.020 Sum_probs=57.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- +.......+.++...+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 56789 9999999999999999999998 98888776553 3333444444422211 123455544 4999999
Q ss_pred ccCCchHHH-HHHH
Q 014834 185 LISDAAQAD-NYEK 197 (417)
Q Consensus 185 avpd~~~~~-Vl~e 197 (417)
+|.|....+ ++..
T Consensus 79 At~d~~ln~~i~~~ 92 (210)
T COG1648 79 ATDDEELNERIAKA 92 (210)
T ss_pred eCCCHHHHHHHHHH
Confidence 999988754 4443
No 333
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.04 E-value=0.29 Score=48.58 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=92.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEec-CChhhH-HHH------HHcCceecCCCcCCHHhhcCcCCE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF-AEA------RAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~s~s~-~~A------~~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
|+||+|+|+ |.||..+.+.+... .++++..... .++.+. ..+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 479999998 99999999999876 1455544443 322211 101 1223332 2346677889999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH--HHHHhhcccccC-CC
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v--r~ly~~G~~~~G-~G 258 (417)
+|=-+-|....+.++-...+= -.+|+=..||+-..++. ...+.+.+++ .++||.+--+. -.+-++--.+.+ .-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~-l~~~a~~v~v-v~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEK-LREAAEKVPV-VIAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHH-HHHHHhhCCE-EEeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988877776544331 12566678997543332 1122234444 46888875431 111111101111 12
Q ss_pred ceEEEeecC-----CCCHHHHHHHHHHHHHhC
Q 014834 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (417)
Q Consensus 259 v~~liav~~-----dvsgea~e~a~~L~~alG 285 (417)
+-- +-.|. -.||.|+.++..+.++.|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 222 22222 367889999999988888
No 334
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.01 E-value=0.16 Score=50.44 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=51.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+++.|||.|-.+.|++..|.+. |. +|.|.+|..++..+.++..+... ..+. ....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~----~~~~--~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW----RPDL--GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc----hhhc--ccccCCEEEECCcccc
Confidence 6899999999999999999988 87 68999998777767776654331 0011 1256899999999654
Q ss_pred H
Q 014834 191 Q 191 (417)
Q Consensus 191 ~ 191 (417)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
No 335
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.98 E-value=1.6 Score=45.98 Aligned_cols=161 Identities=17% Similarity=0.087 Sum_probs=95.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHH--Hc--Cce----------------ecCCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA--GFT----------------EENGTL 169 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~--~~--G~~----------------~~~~~~ 169 (417)
|.+|-|+|.|..+--+|..++.. +- .|-+..|...++....+ +. +.. ..|...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 67899999999999999999976 43 45556675444432222 22 111 002223
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHHHhc-CCC-CcEEEEecCchhhhhhh-cccCCCCCccEEE----------ec
Q 014834 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKP-NSILGLSHGFLLGHLQS-IGLDFPKNIGVIA----------VC 236 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~-lk~-gaiLi~a~G~~i~~~~~-~~i~~~~dv~VI~----------v~ 236 (417)
.+.+++..+=|.+|||||-.+..+|+++|-+. |+. .++|.++..|.-+.+.+ ..-....++.||. +.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 46777888889999999999999999876432 322 23555666553211111 0012234677775 44
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
...|-.+.-...++ ..++. .....-..++....++..+|-.
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~ 195 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQ 195 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCe
Confidence 44554554333332 12233 2233446778888999999865
No 336
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.91 E-value=0.35 Score=49.51 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=56.8
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------hhhHH---HHHH
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~---------------------s~s~~---~A~~ 159 (417)
++.|+. .||.|||+|-+|..+|.+|... |+ ++.+.++.. .+... ..++
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 577888 9999999999999999999998 87 666665531 11111 1111
Q ss_pred c--Ccee--cCCC--cCCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 160 A--GFTE--ENGT--LGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~--G~~~--~~~~--~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
. .+.. .... ..+..+.++++|+||.++-+......+.+..
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 1111 0011 1234577899999999988776666666543
No 337
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=93.89 E-value=0.037 Score=50.04 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=50.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+..+| +||++||+ +.+ ++..|+.. +.++.|.+++... .. ....++. ....++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~-~~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IG-EEPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG----SSCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CC-CCCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 333 77788766 8899988876422 11 1112232 35688999999999875
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
-. ......++.|..+.++++.++
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~vi 92 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREVI 92 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEEE
T ss_pred ee-eeecCCHHHHHHhCccCCeEE
Confidence 33 122234445555555455443
No 338
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.23 Score=53.02 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++... ..+.+++.|+.... .....+.++++|+||..-
T Consensus 9 ~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~~-~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 9 LLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDPD-ALRPHAERGVATVS--TSDAVQQIADYALVVTSP 78 (488)
T ss_pred ccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHhCCCEEEc--CcchHhHhhcCCEEEECC
Confidence 4467 9999999999999999999988 999988765433 34445667875411 112345577899998863
No 339
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.86 E-value=0.18 Score=51.58 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecCCh---hhHHHHHHcCceecCCCc--CCHHhhcCcCCE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS---RSFAEARAAGFTEENGTL--GDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s---~s~~~A~~~G~~~~~~~~--~s~~Ea~~~ADI 181 (417)
|.+|+|||. |..|..+.+-|.++ ++ ++. .....+ +... -.|.. -.+ .+..+ ++++|+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~-~v~s~~~aG~~l~---~~~~~---l~~~~~~~~~-~~~vD~ 69 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLH-LLASSESAGHSVP---FAGKN---LRVREVDSFD-FSQVQL 69 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEE-EEECcccCCCeec---cCCcc---eEEeeCChHH-hcCCCE
Confidence 368999996 99999999999976 54 222 222211 1111 11110 011 12333 478999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
||+++|.....++.+++.. .|..+++.+|.
T Consensus 70 vFla~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 70 AFFAAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred EEEcCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 9999997666666655533 57778877764
No 340
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.85 E-value=0.33 Score=46.54 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=53.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC------------------C-hhhH---HHHHHcC
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------G-SRSF---AEARAAG 161 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~------------------~-s~s~---~~A~~~G 161 (417)
++.|+. ++|.|||+|..|..++++|... |+ ++++.+.. + .+.. +..++..
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA------GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 477888 9999999999999999999998 77 44444321 0 0111 1111111
Q ss_pred --c--eecCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 162 --F--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 162 --~--~~~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
+ ...+... .+..+.++++|+||.|+-+......+.+.
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 131 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDA 131 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHH
Confidence 1 1101111 12346788899999998876655555554
No 341
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.79 E-value=0.38 Score=48.09 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=46.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---------cCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---------~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.+-.....-.+.. +.+..| .+.+.++...+.+++ .+.....+...+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~v-~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGARV-HNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--EE-EEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCeE-EEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987755544443 112334 344555544444432 11111100011222235688999
Q ss_pred EEccCCc----hHHHHHHHHHhcCCCCcEEE--EecCch
Q 014834 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (417)
Q Consensus 183 iLavpd~----~~~~Vl~eI~~~lk~gaiLi--~a~G~~ 215 (417)
+++--.. .-.++++.|..+|++|+.|+ .++|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9986655 34579999999999999776 677763
No 342
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.78 E-value=0.33 Score=48.74 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=40.7
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----c-----CceecCCCcCCHHhhcCcCCEEEE
Q 014834 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-----GFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~-----G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|||.|.+|.++|..|... ++ ++.+.+...+.....+.+ . .... ..+..+.+++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~~~~~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKI----RSGDYSDCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEE----ecCCHHHHCCCCEEEE
Confidence 699999999999999887 66 566666544333323322 1 1121 1234578899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 71 tag 73 (299)
T TIGR01771 71 TAG 73 (299)
T ss_pred CCC
Confidence 744
No 343
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.71 E-value=0.14 Score=53.78 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=50.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--h--hcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLA--E--AKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~--~--~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.+|||||+|.+|..+++.|.+... . .|.++++. |.+++..+. +.....+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 489999999999999988865411 1 11234433 334432221 101011112 1457888885 4699999
Q ss_pred ccCCch-HHHHHHHHHhcCCCCcEEE
Q 014834 185 LISDAA-QADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 185 avpd~~-~~~Vl~eI~~~lk~gaiLi 209 (417)
++++.. +.+.. ...|+.|+-|+
T Consensus 79 ~tg~~~~~~~~~---~~aL~~GkhVV 101 (426)
T PRK06349 79 LMGGIEPARELI---LKALEAGKHVV 101 (426)
T ss_pred CCCCchHHHHHH---HHHHHCCCeEE
Confidence 987643 22333 34455666544
No 344
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=93.65 E-value=0.32 Score=49.17 Aligned_cols=118 Identities=8% Similarity=0.141 Sum_probs=78.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.||.|.| .|.-|..+-..++.. |-+++.|.....- ..+-.|+.. ..++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6888988 688899998888888 8888877655310 011257765 6788887765 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
....+.+++.... .-..+|++++||.-...++.......+-.+-.+-||+.|..
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 9999988876542 12347889999964322211111112223445568877654
No 345
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.61 E-value=0.3 Score=48.93 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
| ++|+|||--.=-..+++.|.+. |++|.+..-+++. . ...|+.. +.+.++++++||+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888788899999998 9998875433221 1 2347764 457788999999999998863
Q ss_pred hH----HH-------HH-HHHHhcCCCCcEEE
Q 014834 190 AQ----AD-------NY-EKIFSCMKPNSILG 209 (417)
Q Consensus 190 ~~----~~-------Vl-~eI~~~lk~gaiLi 209 (417)
.. .. .+ .+....|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 11 01 11 35677889997544
No 346
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.59 E-value=0.64 Score=45.13 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=58.7
Q ss_pred ccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCc
Q 014834 100 LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 100 ~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
+|+.. -.++| ++|-|||.|.+|..=+..|.+. |.+|.|....-.+.. +.+....+....+ ..+..+ +.+
T Consensus 16 ~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r-~~~~~d-l~g 85 (223)
T PRK05562 16 YMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKG-NYDKEF-IKD 85 (223)
T ss_pred EeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeC-CCChHH-hCC
Confidence 34443 55668 8999999999999999999998 888877654433333 3333223332111 123333 578
Q ss_pred CCEEEEccCCchHHHHHHHHH
Q 014834 179 SDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~ 199 (417)
+++||.||.|....+-+.+..
T Consensus 86 ~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHH
Confidence 999999999988765444443
No 347
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.54 E-value=0.23 Score=51.66 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=47.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh---hhHHHHHHcCceecCCCcCCHHhhcCc-CCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s---~s~~~A~~~G~~~~~~~~~s~~Ea~~~-ADIVi 183 (417)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 567 9999999999999999999999 999987765422 2223344557653100 123344444 89888
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 854
No 348
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.52 E-value=0.19 Score=53.51 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=49.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh---HHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s---~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.+.+ |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+.. ..+...++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~--~~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH--DDEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc--chhccccCCEEE
Confidence 4556 9999999999999999999999 99999887543321 1222345655422221 226678899999
Q ss_pred Ec
Q 014834 184 LL 185 (417)
Q Consensus 184 La 185 (417)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 85
No 349
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.47 E-value=0.33 Score=51.39 Aligned_cols=74 Identities=24% Similarity=0.218 Sum_probs=52.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~~ 167 (417)
-+| ++|.|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-+
T Consensus 139 ~~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 211 (467)
T TIGR01318 139 PTG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLN 211 (467)
T ss_pred CCC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECC
Confidence 367 9999999999999999999998 999888765431 1245567788754211
Q ss_pred C-c---CCHHhhcCcCCEEEEccCC
Q 014834 168 T-L---GDIYETISGSDLVLLLISD 188 (417)
Q Consensus 168 ~-~---~s~~Ea~~~ADIViLavpd 188 (417)
+ + ...++.....|.||+++--
T Consensus 212 ~~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 212 CEVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred CEeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1 1334555679999998753
No 350
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.47 E-value=0.46 Score=49.04 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=55.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------ChhhHHHHHHc----
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~-------------------~s~s~~~A~~~---- 160 (417)
++.|+. ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 87 56665543 11221111111
Q ss_pred -Ccee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+.. ..... .+..+.++++|+||.++-.......+.+..
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1211 01111 123457789999999987655554555543
No 351
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.41 E-value=0.32 Score=48.92 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=55.8
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.+++.-|.+..+. .+..|.+.... +.++++.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHPD--TNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcCC--CCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999865000 02355544221 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997543 222 34578999988754
No 352
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.35 E-value=0.33 Score=53.48 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=52.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~~ 167 (417)
-+| ++|+|||.|..|.+.|..|++. |++|+++.+.+. ...+...+.|+...-+
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 358 9999999999999999999998 999888876531 1234556677643211
Q ss_pred C----cCCHHhhcCcCCEEEEccCC
Q 014834 168 T----LGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 168 ~----~~s~~Ea~~~ADIViLavpd 188 (417)
+ ..+.+++....|.||+++--
T Consensus 381 ~~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CccCCcCCHHHHHhcCCEEEEeCCC
Confidence 1 12455666789999998753
No 353
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.35 E-value=0.61 Score=41.00 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
||.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 555554
No 354
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.32 E-value=0.45 Score=48.39 Aligned_cols=157 Identities=12% Similarity=0.049 Sum_probs=89.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||+||| -|-.|.-+.+-|.+. ..+++. ..... +. +. ..+.+++++++|++|+++|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~-~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPD-RR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEecc-cc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 578888888888765 123432 22211 11 22 2355677789999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
..++.+++. ..|..|++.+|. + .+.+ +++.+.|.-... .|+.... ... |+ +....
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA---Y------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH---H------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 887776653 357788887764 1 1112 566777754332 2222222 222 33 34344
Q ss_pred HHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHH
Q 014834 271 GRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~ 321 (417)
..+.-+++.=+...|.. + ....-.+++.+..||++-...+.+.
T Consensus 117 aTa~~LaL~PL~~~~li---~-----~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL---P-----ADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc---c-----ccceEEEEeccccCccChhhhHHhh
Confidence 44444444444444432 0 1111246666777777777655544
No 355
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.29 E-value=0.41 Score=48.64 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=85.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
.||+||| .|..|..+.+-|.+. . +++.....+ +.. . ..+.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~-~~~------~--------~~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEA-KRK------D--------AAARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecC-CCC------c--------ccCchhhhcCCCEEEECCCHH
Confidence 6899999 799999999988765 3 243322221 111 0 112345567899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
...++.+++.. .|..|++.++- + .+.+ +++.+.|.--.. .|+..+. ... ++ +...
T Consensus 62 ~s~~~~~~~~~---~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALIDN---PATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGC 116 (313)
T ss_pred HHHHHHHHHHh---CCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCc
Confidence 88887777643 57888877763 1 1222 566777744222 2333332 222 33 3333
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea 319 (417)
...+.-+++.=+...|.. ++...-.+++.+..||.+-..++.
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~ 158 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAA 158 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHH
Confidence 334444444334444432 111112356666677776664443
No 356
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.27 E-value=0.63 Score=45.20 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=56.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCC---HHhhc------Cc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG 178 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~------~~ 178 (417)
.| .+|.|+|.|.+|...++.++.. |.. |++..+ .....+.+++.|+.. +.+ ..+.+ ..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADP-SPDRRELALSFGATA----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCC
Confidence 57 8999999999999999999888 886 655443 345578888888742 111 11111 24
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.|+|+-++.... .++.....++++-.++..
T Consensus 188 ~d~vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 788888875422 333334455666555533
No 357
>PLN03075 nicotianamine synthase; Provisional
Probab=93.20 E-value=0.83 Score=46.18 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----cCceec-CCCcCCHHhh---cCcC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEE-NGTLGDIYET---ISGS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----~G~~~~-~~~~~s~~Ea---~~~A 179 (417)
.. ++|.+||+|..|..-..-++...+ +-. +++.+.++...+.|++ .|+... .=...+..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 44 899999999987754443333200 113 4566666655655554 222100 0001232222 3678
Q ss_pred CEEEEccC----CchHHHHHHHHHhcCCCCcEEEE--ecCc
Q 014834 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (417)
Q Consensus 180 DIViLavp----d~~~~~Vl~eI~~~lk~gaiLi~--a~G~ 214 (417)
|+|++.+= .....++++.+..+|+||.++++ ++|.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999851 24557899999999999998764 4553
No 358
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.15 E-value=0.21 Score=51.60 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=51.9
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce---e-cCC-C---------c--CCHH-
Q 014834 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~---~-~~~-~---------~--~s~~- 173 (417)
|||.++|.|+||+++ +.-|.++ |++|+..+.. +...+.-.+.|.- . .++ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 589999999999977 5556666 8887766643 3344444444631 1 011 0 1 0112
Q ss_pred --hhcCcCCEEEEccCCchHHHHHHHHHhcC
Q 014834 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (417)
Q Consensus 174 --Ea~~~ADIViLavpd~~~~~Vl~eI~~~l 202 (417)
+.+.++|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999887666666555444
No 359
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.33 Score=49.12 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.5
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHH----HHcC--ceecCCCcCCHHhhc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A----~~~G--~~~~~~~~~s~~Ea~ 176 (417)
|+| +||++||=| ||+.++...-..- |+++.+.... ++.-++.| .+.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999977 7888877776666 9998887543 33333444 3345 443 56899999
Q ss_pred CcCCEEEEccCCchH--HHHHHHHHhcCC
Q 014834 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (417)
Q Consensus 177 ~~ADIViLavpd~~~--~~Vl~eI~~~lk 203 (417)
++||+|..=+-...= .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999976654332 233444444443
No 360
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.13 E-value=0.25 Score=52.55 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHc--CceecCCCcC-CHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~--G~~~~~~~~~-s~~Ea~~~ADIVi 183 (417)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 456 8999999999999999999999 999887664432 222223334 43321 11 2345667899999
Q ss_pred Ec--cCC
Q 014834 184 LL--ISD 188 (417)
Q Consensus 184 La--vpd 188 (417)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 96 565
No 361
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.11 E-value=0.52 Score=44.91 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=60.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLavp 187 (417)
|||+||| -|..|..+++-..+. |++|+...|+.++.... .+.+..+..+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6999999 589999999999999 99998777875543221 344322222333 3467888999999864
Q ss_pred Cc----h--HHHHHHHHHhcCCC-Cc-EEEEecCc
Q 014834 188 DA----A--QADNYEKIFSCMKP-NS-ILGLSHGF 214 (417)
Q Consensus 188 d~----~--~~~Vl~eI~~~lk~-ga-iLi~a~G~ 214 (417)
.. . +.+..+.+...++. +. -+.+.+|.
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA 106 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA 106 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 33 2 22233334455544 33 35666776
No 362
>PLN00106 malate dehydrogenase
Probab=93.11 E-value=0.22 Score=50.76 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHHcCc-eecC-CCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~~G~-~~~~-~~~~s~~Ea~~~ADIViL 184 (417)
.||+|||. |++|.++|..|... ++ ++.+.+.... ...+....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 55 5666655431 11121111111 1101 012345789999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 743
No 363
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.09 E-value=0.26 Score=53.27 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=51.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------hhhHHHHHHcCceec-
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~--------------------s~s~~~A~~~G~~~~- 165 (417)
.-.| ++|.|||.|..|.+.|..|++. |++|++..+.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4567 9999999999999999999998 99988876421 123456777886431
Q ss_pred CCCc-C--CHHhhcCcCCEEEEccCC
Q 014834 166 NGTL-G--DIYETISGSDLVLLLISD 188 (417)
Q Consensus 166 ~~~~-~--s~~Ea~~~ADIViLavpd 188 (417)
+... . +.++.-...|+||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 233344568999998764
No 364
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=93.07 E-value=0.32 Score=49.57 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=54.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCh-hhHHHHHHcCc------e--ecCCCcCC-HHhhcCcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS-RSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s-~s~~~A~~~G~------~--~~~~~~~s-~~Ea~~~A 179 (417)
+||+|||+ |-||.-+++.|.+. . +++....+... ..........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 48999995 99999999988765 4 46543323221 11111111111 0 00000111 22345789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988887765533 57777777664
No 365
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.97 E-value=0.42 Score=46.56 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. +||.|||+|..|..++++|... |+ ++.+.+
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD 63 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA------GVGTLTLVD 63 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 578888 9999999999999999999998 76 444443
No 366
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.96 E-value=0.66 Score=45.88 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=55.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
+| +++.|+|.|.+|...++-++.. |.++++..+......+.+.+.++.. ..++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 7899999999999999988888 8875555444444455565544321 111122458999999886
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 014834 189 AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.. .++...+.++++-.+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 234444556666655543
No 367
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.90 E-value=0.72 Score=47.41 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=54.2
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHHHHH---Hc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~~A~---~~- 160 (417)
++.|+. .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++ +.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 577888 9999999999999999999988 77 454444321 01111111 11
Q ss_pred -Ccee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 -G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
.+.. ..... .+..+.++++|+||.++-+.....++.+.
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~ 138 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWA 138 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 1111 01111 12356789999999998766555566554
No 368
>PRK08328 hypothetical protein; Provisional
Probab=92.85 E-value=0.62 Score=44.97 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.8
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|++ .+|.|||+|-.|..++.+|... |+ ++.+.+
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~------Gvg~i~lvD 58 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA------GVGRILLID 58 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 678888 9999999999999999999998 77 455544
No 369
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.83 E-value=0.34 Score=49.30 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=55.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHcCceecCCCcCCHH-hhcCcCCEEEEc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~-Ea~~~ADIViLa 185 (417)
++||+||| .|..|..+.+-|.+. ++ ++....+..+...... -.|... .+.+.. +.++++|+||++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A 70 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFS 70 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEEC
Confidence 37999999 589999999999886 65 3333333211111110 012111 012221 234789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....++.+++. +.|..|++.++.
T Consensus 71 ~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 71 AGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CChHHHHHHHHHHH---hCCCEEEECCch
Confidence 99887777776653 357777776653
No 370
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=92.81 E-value=0.72 Score=47.95 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=87.4
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCcE---EEEEecCChhhHHHHHHcCceecCCCcCCH-H-hhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr-~s~~~~~~G~~---ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~-~-Ea~~~ADIViL 184 (417)
++|||||+ |..|..+.+.|. +. .+. +..... +++.... ..+......+.+. + +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss--~~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFST--SQLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEc--hhhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999997 999999999888 55 443 222211 1111111 1111000012222 2 35788999999
Q ss_pred ccCCchHHHHHHHHHhcCCCC--cEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEE
Q 014834 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~g--aiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~l 262 (417)
+.+.....++..... +.| .+|++.++. + ...+|++. |-|---...+..... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa---~------Rmd~dVPL--VVPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS---L------RMKDDAVI--ILDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh---h------hcCCCCCE--EeCCcCHHHHHhHHh-------CCcCe-
Confidence 998876666665544 367 678887765 1 22234444 345333333332111 24533
Q ss_pred EeecCCCCHHHHHHHH-HHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 263 iav~~dvsgea~e~a~-~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
++ +.+.+--.+-.++ .|....|-.+++-|| | =.+||++..-++-+.+..
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsT---------y---QAvSGAG~~g~~eL~~Qt 178 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVAT---------Y---QAASGGGARHMRELLTQM 178 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEe---------c---hhhhhcCHHHHHHHHHHH
Confidence 22 3444444443333 344445555555554 2 136787766555555444
No 371
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.78 E-value=1.2 Score=44.61 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=59.6
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcC---cCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~---~ADIVi 183 (417)
+| ++|.|+|.|.+|...++-++.. |. +|++..+. ....+.+++.|.... +..-.+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999988888 88 46555555 445788888886421 100112333322 379999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
-++.... .++.....++++-.++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9887532 333444556676665544
No 372
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.78 E-value=0.34 Score=49.75 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEE-EE-ecCChhhHHHHHHcCceecCCCcCC-HHhhcCcCCEEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VG-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Vi-Vg-~r~~s~s~~~A~~~G~~~~~~~~~s-~~Ea~~~ADIViL 184 (417)
.||+||| .|..|..+.+-|.++ ++ ++. +. .+...+.... .|... .+.+ ..+.+.++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 6899999 578899999888876 55 332 22 2222222211 12111 0111 1244588999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|.....++.+++. +.|..|++.+|.
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999987777776653 358888888764
No 373
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.76 E-value=0.4 Score=48.45 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=55.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+.. +..+..|.+.... +.++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQKG--PGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhcc--cCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999976 78999999998650 0002356554321 1357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEecC
Confidence 9864332 22 34578999888753
No 374
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.74 E-value=0.61 Score=48.77 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
..|-|+|+|.+|..+++.|++. |.++++.+.+ + .+...+.|.....|...+.+ .-+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8877666543 1 23333344322222223322 13679999999998
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEe
Q 014834 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~g-aiLi~a 211 (417)
+....-..-.....+.|+ +++..+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876543222222334443 455433
No 375
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.71 E-value=0.7 Score=47.59 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----cCceecCCCcCCHHhh-cCcCCEEEE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea-~~~ADIViL 184 (417)
|.||+|||. |--|.-+.+-|... ..+++.+...+..+-...... .|.....-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 589999995 66666666665543 133544332221111111111 1221000011234443 455899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+|+..-.++..++.. .|..|++.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999998888877643 4555887776
No 376
>PLN02527 aspartate carbamoyltransferase
Probab=92.70 E-value=0.73 Score=46.60 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=49.1
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.++| .||++||-+ ++..+++..+... .|+++.+...+. ....+.+++.|... ..+.++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEW--EESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEE--EEEcCHHHHhCCC
Confidence 3788 899999976 5889998887653 167777665432 23344555556432 1146899999999
Q ss_pred CEEEEc
Q 014834 180 DLVLLL 185 (417)
Q Consensus 180 DIViLa 185 (417)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999984
No 377
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.67 E-value=0.85 Score=45.59 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=60.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLavp 187 (417)
.| .+|.|+|.|.+|...++.++.. |.+|++..+.+ ...+.+++.|+.. +.+. ++.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~~-~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRGA-AARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCCh-HHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999988888877 88876665554 4578899999753 2221 111235688887765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.. +.+....+.++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666677777766543
No 378
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.67 E-value=0.44 Score=48.30 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=50.0
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh--h----HHHHHHcC-ceecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--S----FAEARAAG-FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~--s----~~~A~~~G-~~~~~~~~~s~~Ea~~~ 178 (417)
.++| +||++||- +++..+++..+... |++|.+...+.-. . .+.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999997 69999999998887 9988776554311 1 12333444 332 4689999999
Q ss_pred CCEEEEcc
Q 014834 179 SDLVLLLI 186 (417)
Q Consensus 179 ADIViLav 186 (417)
+|+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999853
No 379
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=92.66 E-value=0.65 Score=46.88 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHH-HHHHcCceecCCCcCCHHhhcCcCC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA-EARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~-~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
.++| .||++||- ++...+++..+..- |.+|.+.....- ...+ .+++.|.... ...+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4778 89999997 78999999998887 998876654321 1112 1555674320 1468999999999
Q ss_pred EEEEc
Q 014834 181 LVLLL 185 (417)
Q Consensus 181 IViLa 185 (417)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
No 380
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=92.56 E-value=0.37 Score=49.29 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=49.3
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| +||++||-+ ++..+++..+... |.+|.+...+. +...+ .+++.|... ....++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 3678 899999985 8888999888877 99887765431 12222 233456321 0157899999
Q ss_pred CcCCEEEEc
Q 014834 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADIViLa 185 (417)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
No 381
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=92.44 E-value=0.84 Score=48.39 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred ccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
++| +||++||-+ ++..+++..+...+ |++|.+..... +...+.+.+.|.... .+.+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 778 999999984 89999998876521 78877664432 222345555564321 1578999999999
Q ss_pred EEEEcc
Q 014834 181 LVLLLI 186 (417)
Q Consensus 181 IViLav 186 (417)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
No 382
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=92.36 E-value=0.5 Score=48.44 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+..- |++|.+..... ....+ .+++.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 899999986 7899999988877 99887664432 11122 2344453210 147899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
+++|+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 383
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.35 E-value=0.63 Score=48.40 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=62.5
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| ++|+|+|+ -+-...+++.|.+. |.+|.+++..-... .. ...+. +.+.+|++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~~-~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPEE-EV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCChh-hh-hhccc------CCCHHHHH
Confidence 3688 99999998 55777888888888 99998876542221 11 11221 35788999
Q ss_pred CcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEE
Q 014834 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~-Vl~eI~~~lk~gaiLi~ 210 (417)
++||+|++++.-....+ -++.+...|++ .+|++
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999887765 35667766654 35554
No 384
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.29 E-value=0.48 Score=48.41 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=53.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH-HHHHcCcee--------cCCCc--CCHHhhcCcC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGTL--GDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~-~A~~~G~~~--------~~~~~--~s~~Ea~~~A 179 (417)
.||+|+| .|.+|..+++.|.+. ..+++....+..+..-+ .....++.. .+-.+ .+. +.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 7999998 899999999998865 12355433233211100 100011100 00001 233 345789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+|++++|.....++.+.+.. .|..+++.+|
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 999999999877776655433 4666776666
No 385
>PRK08223 hypothetical protein; Validated
Probab=92.29 E-value=1.1 Score=45.01 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.5
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhh
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s 133 (417)
++.|+. .+|.|||+|-.|..++.+|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 688888 9999999999999999999998
No 386
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=92.28 E-value=0.87 Score=46.77 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=48.1
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHH----HHcCceecCCCcCCHHhhcC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A----~~~G~~~~~~~~~s~~Ea~~ 177 (417)
.++| .||++||- .++..+++..+..- |++|.+..... ..-.+.+ ...|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4778 89999997 47888888888776 99887765431 1222222 33453210 1578999999
Q ss_pred cCCEEEEc
Q 014834 178 GSDLVLLL 185 (417)
Q Consensus 178 ~ADIViLa 185 (417)
++|+|..-
T Consensus 222 ~aDvvy~~ 229 (338)
T PRK02255 222 DADFVYTD 229 (338)
T ss_pred CCCEEEEc
Confidence 99999984
No 387
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.19 E-value=1.6 Score=45.42 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=88.2
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhhhhhhcCCcE---EEEEecCChhhHHHHHHcCceecCCCcCC--HHhhcCcCCEEE
Q 014834 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVL 183 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~-~Lr~s~~~~~~G~~---ViVg~r~~s~s~~~A~~~G~~~~~~~~~s--~~Ea~~~ADIVi 183 (417)
|.+|||||+ |..|.-+.+ -|.+. .+. +.. ..+ +++-..-. .+......+.+ ..+.++++|++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss-~~sg~~~~--~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FST-SQAGGAAP--SFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecc-hhhCCccc--ccCCCcceEEecCChhHhcCCCEEE
Confidence 579999997 999999997 55555 553 443 222 11111111 11100001111 123457899999
Q ss_pred EccCCchHHHHHHHHHhcCCCC--cEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~g--aiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
+++|.....++.+++.. .| .+|++.+|. + ...+ ++..+-|---...++..-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~---f------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAAST---L------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChH---H------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99998877777776543 57 567877764 1 1122 4555566544433332111 23333
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC-ceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
|+ +.+.+--+.-+++.=+...|.. +++-+ .-..+||++-.-++-+.+..
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~qt 179 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQM 179 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHHH
Confidence 33 4444545555555445555543 22222 22457887776555544443
No 388
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.17 E-value=0.28 Score=50.14 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=48.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E 174 (417)
+--+| .+++|+|+|..|.+.+++.|.. |..-+|+.+.++...++|++.|++. +-++.|
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe----~iNp~d 246 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE----FINPKD 246 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce----ecChhh
Confidence 33467 8999999999999999999998 8866778888888899999999985 555543
No 389
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.17 E-value=1 Score=46.65 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=56.4
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHH---HHHHc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~---~A~~~- 160 (417)
++.|+. .+|.|||+|-.|..++.+|... |+ ++.+.++.. .+... ...+.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 678888 9999999999999999999998 76 555554320 01111 11111
Q ss_pred -Cc--eecCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~--~~~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+ ......+ .+..+.++++|+||-|+-.......+.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11 1111111 134568899999999988777666776654
No 390
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.13 E-value=1.1 Score=45.42 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=57.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~~ADIViLav 186 (417)
.| ++|.|+|.|.+|...++.++.. |.+|++......+..+.+++.|+... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999998888 88876655554454556667886320 000 001223333579999887
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
.... .+++....++++-.++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6422 3334445566666554
No 391
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.12 E-value=1.1 Score=37.93 Aligned_cols=82 Identities=26% Similarity=0.305 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHhhhhhhcCCcEEE-EEecC--ChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCchHH
Q 014834 118 GWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (417)
Q Consensus 118 G~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~--~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~~~~ 192 (417)
|+|++|..++..|...-.. .++++. |.+++ -...+......... +.+.++++. +.|+||=|+++....
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 234443 34444 11222222222222 568889888 899999999988777
Q ss_pred HHHHHHHhcCCCCcEEE
Q 014834 193 DNYEKIFSCMKPNSILG 209 (417)
Q Consensus 193 ~Vl~eI~~~lk~gaiLi 209 (417)
+.+.++. +.|.-|+
T Consensus 74 ~~~~~~L---~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKAL---ERGKHVV 87 (117)
T ss_dssp HHHHHHH---HTTCEEE
T ss_pred HHHHHHH---HCCCeEE
Confidence 7776544 4566444
No 392
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.08 E-value=0.66 Score=46.02 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=48.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIViLavp 187 (417)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.+. +..++++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899999 599999999999999 99998887764332 2222335432212222 34677899999998764
No 393
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=92.00 E-value=0.57 Score=47.95 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=49.0
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhH----HHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~----~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+... |++|.+...+. +... +.+++.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3778 899999987 6788888888877 99887765431 1111 23344563320 157899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
No 394
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.00 E-value=0.27 Score=50.38 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=55.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEec--CChhhHHHHHHcCceecCCCcCCHHhh-cCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r--~~s~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIViL 184 (417)
.+|+|||. |..|.-+.+-|.++ .+ ++..... ...+...... .... +.+.++. ..++|+||+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~------~hP~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~ 72 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAER------QFPVGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcC------CCCceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEE
Confidence 79999997 99999999988874 33 4332222 1122222110 0122 2233333 368999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|.....++.+++.+ .|..|++.+|.
T Consensus 73 a~p~~~s~~~~~~~~~---~g~~VIDlS~~ 99 (336)
T PRK08040 73 VAGREASAAYAEEATN---AGCLVIDSSGL 99 (336)
T ss_pred CCCHHHHHHHHHHHHH---CCCEEEECChH
Confidence 9998877777766543 58888877764
No 395
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=91.97 E-value=0.99 Score=45.56 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCceecCCCcCCHHhhcCc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
++| .||++||- .+...+++..+... |++|.+...+. ....+. +.+.|.... ...++++++++
T Consensus 146 l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVKG 216 (304)
T ss_pred CCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhCC
Confidence 678 89999997 68889999888877 99887765332 111222 344563210 14689999999
Q ss_pred CCEEEEc
Q 014834 179 SDLVLLL 185 (417)
Q Consensus 179 ADIViLa 185 (417)
||+|...
T Consensus 217 aDvvy~~ 223 (304)
T TIGR00658 217 ADVIYTD 223 (304)
T ss_pred CCEEEEc
Confidence 9999985
No 396
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.77 E-value=0.5 Score=50.17 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH---HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~---~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 467 9999999999999999999999 999988774322111 1222223222 1 1123455678999988
Q ss_pred c--cCC
Q 014834 185 L--ISD 188 (417)
Q Consensus 185 a--vpd 188 (417)
. +|+
T Consensus 76 SpgI~~ 81 (468)
T PRK04690 76 SPGISP 81 (468)
T ss_pred CCCCCC
Confidence 5 454
No 397
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.77 E-value=0.65 Score=45.22 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=53.6
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhH---HHHHHc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~---~~A~~~- 160 (417)
++.|++ .+|.|||+|-.|..++.+|... |+ ++++.++.. .+.. +..++.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 678888 9999999999999999999998 76 444433220 0111 111111
Q ss_pred -Cce--ecCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 161 -GFT--EENGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 -G~~--~~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
.+. ..+..+. +..+.++++|+||.++-+......+.+.
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~ 134 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQ 134 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHH
Confidence 111 1011111 2456788999999998766555556554
No 398
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.73 E-value=0.48 Score=53.63 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
|++|.|||+|-.|.+. |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3679999999999997 9999999 99998777543333344456687642 12233567789999875
No 399
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.49 E-value=0.65 Score=51.30 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=51.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecCCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~~~ 168 (417)
.| ++|+|||.|..|.+.|..|++. |++|+|..+... ...+.+++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999998 999988876421 12345566776532111
Q ss_pred -c---CCHHhhcCcCCEEEEccC
Q 014834 169 -L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 169 -~---~s~~Ea~~~ADIViLavp 187 (417)
+ .+.++.....|.||+++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1 134455567999999874
No 400
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.39 E-value=0.63 Score=48.64 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=47.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHH--cCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~--~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+++ ++|.|+|.|..|.+.|+-|.+. |.+|.+.+..... ..+..++ .|+....+ ...++...+.|+||.
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILAL 73 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEEE
Confidence 457 8999999999999999999999 9998877654332 1222222 36653111 112334568999998
Q ss_pred c--cCC
Q 014834 185 L--ISD 188 (417)
Q Consensus 185 a--vpd 188 (417)
. +||
T Consensus 74 spgi~~ 79 (445)
T PRK04308 74 SPGISE 79 (445)
T ss_pred CCCCCC
Confidence 5 444
No 401
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.36 E-value=0.53 Score=48.57 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=55.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-hhhhhcCCcE---EEEEe--cCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~-s~~~~~~G~~---ViVg~--r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.||||||+ |..|.-+.+-|.+ . .++ +.... +...+......+ ..... -.+.+ ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999997 9999999998884 4 554 32222 222222211111 11110 12333 3478999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|.....++..+.. +.|..|++.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887777776653 358888877764
No 402
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.35 E-value=0.85 Score=46.16 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.5
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.++| +||++||- +++..+++..+..- |+++.+...++-.... . ..+.. ..+++|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 3788 89999997 58999999999887 9988776543211000 0 01232 578999999999988
Q ss_pred Ec
Q 014834 184 LL 185 (417)
Q Consensus 184 La 185 (417)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
No 403
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.31 E-value=0.78 Score=46.40 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=54.6
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+.. ...+..|.+... + +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKA--DGGNATVTVCHS---R----------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCc--cCCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEE
Confidence 36899 999999977 78999999987530 000235665422 1 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++--.. ++. ..++|+|++|++++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 876432 222 24578999988754
No 404
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=91.27 E-value=0.63 Score=47.66 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=49.2
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+... |.+|.+...+. +...+ .++..|.... .+.++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999997 8888888888877 98887664432 11122 2334564320 146899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 405
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.22 E-value=0.82 Score=43.60 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=48.1
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCC----HHhhc-Cc
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s----~~Ea~-~~ 178 (417)
+..++ ++|.|+|. |.+|..+++.|.+. |++|++..|..++....... .++....+.+.+ ..+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45556 89999995 99999999999998 99988777764332221111 123211111222 23445 57
Q ss_pred CCEEEEccCC
Q 014834 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADIViLavpd 188 (417)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 8999988654
No 406
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=91.06 E-value=1 Score=49.61 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=52.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EE--EEEecCCh------hhHHHHHHcC--c--eecCC-CcCCHHh
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAAG--F--TEENG-TLGDIYE 174 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~V--iVg~r~~s------~s~~~A~~~G--~--~~~~~-~~~s~~E 174 (417)
+. .||+|||.|.+|.++...|..+ |+ ++ ++.+...+ ...+.|++.+ + ...+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 55 7999999999999999999999 87 33 23333222 3345666522 1 11111 1235778
Q ss_pred hcCcCCEEEEccCCchHHH
Q 014834 175 TISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~ 193 (417)
+++..|+|++.+-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999988666543
No 407
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.03 E-value=0.51 Score=49.04 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=44.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----HHH-HcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----~A~-~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
||.|||+|..|.++|+-|++. |++|.+.+........ ..+ ..|+....+ .+ .+.+.++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEEC
Confidence 589999999999999999999 9999877754332111 122 347654211 23 4556889998875
No 408
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=90.93 E-value=0.5 Score=47.35 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=67.7
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcC-CcEEEEEecCChhhHHHHHHc-----CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAA-----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~-G~~ViVg~r~~s~s~~~A~~~-----G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-..|+|.|.|+..+...-... .+ =.+|.|++|..+.+.++|... .+..+-....+.+++++.+|||+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999887765543 11 227899999988777777732 11111112457889999999999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHL 219 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~ 219 (417)
+...-. + ....++||+-|-..++|+.+.-
T Consensus 216 lstePi-l---fgewlkpgthIdlVGsf~p~mh 244 (333)
T KOG3007|consen 216 LSTEPI-L---FGEWLKPGTHIDLVGSFKPVMH 244 (333)
T ss_pred ccCCce-e---eeeeecCCceEeeeccCCchHH
Confidence 853211 1 1245789998989999976433
No 409
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=90.90 E-value=0.86 Score=46.77 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.4
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhH----HHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~----~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+..- |+++.+...+. ..-. +.+++.|.... ...+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 899999986 7899999988877 99887765432 1112 23444563220 157899999
Q ss_pred CcCCEEEEc
Q 014834 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADIViLa 185 (417)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999985
No 410
>PLN02342 ornithine carbamoyltransferase
Probab=90.86 E-value=0.91 Score=46.84 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=49.5
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcC---ceecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G---~~~~~~~~~s~~Ea~~~ 178 (417)
.++| .||++||-+ ++..+++..+... |++|.+..... ....+.+++.| +.. ..+++|++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 3778 899999975 6888888887776 99887665432 22334455545 332 5788999999
Q ss_pred CCEEEEcc
Q 014834 179 SDLVLLLI 186 (417)
Q Consensus 179 ADIViLav 186 (417)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
No 411
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.83 E-value=1.1 Score=45.91 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--E-EEEEec--CChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLR--KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~-ViVg~r--~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
++|||+| -|..|..+.+.|.++ .+ + +.+... +..+..-.+........+ .. ......+++|++|.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~-~~-~~~~~~~~~Divf~~ 73 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKYIEFGGKSIGVPE-DA-ADEFVFSDVDIVFFA 73 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCccccccCccccCcc-cc-ccccccccCCEEEEe
Confidence 7999997 599999999999886 43 2 223222 211210111111111100 00 122345689999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+.....++.++... .|.+|++.++.
T Consensus 74 ag~~~s~~~~p~~~~---~G~~VIdnsSa 99 (334)
T COG0136 74 AGGSVSKEVEPKAAE---AGCVVIDNSSA 99 (334)
T ss_pred CchHHHHHHHHHHHH---cCCEEEeCCcc
Confidence 998888777776654 58888887764
No 412
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.60 E-value=1.9 Score=42.39 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=62.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH----HcCceecCCCcCCHHhhcC---cCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~----~~G~~~~~~~~~s~~Ea~~---~AD 180 (417)
|.| ++|.=|||| |+.++.-|.+. |.+|+ +.+-.++..+.|+ +.|+.. +-...+.+|+.. .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~Vt-giD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASVT-GIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCeeE-EecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 778 999999998 45777777777 88875 6666566666665 455553 222345666665 579
Q ss_pred EEEEc-----cCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLa-----vpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+|+.+ +|+... ++..+...+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 88764 555433 777888999999877655
No 413
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=90.57 E-value=0.43 Score=48.97 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViL 184 (417)
|++|||||.|..|..+++..++. |++|++.+.... .....+ ..... ....| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~~a--d~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQVA--DEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhHhC--ceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 58999999999999999999998 999887765422 222222 22221 01223 4567788888753
No 414
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=90.49 E-value=1.1 Score=47.16 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.9
Q ss_pred hccCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCceecCCCcC
Q 014834 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 107 ~l~gmkkIgIIG~-----G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~~~~~~~~~ 170 (417)
.++| +||+|+|- | ++..+++..+..- |++|.+...+. +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3677 89999985 4 6778888888777 99887765442 222233 444563220 147
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 415
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=90.48 E-value=0.84 Score=46.62 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=53.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCce---------ec------CCC---cC---
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NGT---LG--- 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~---------~~------~~~---~~--- 170 (417)
||||+|+|.+|+.+.+.|.++- .+.+++|..-++. +.+......+++-+ .. ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6999999999999999988650 0013565433332 22223333332210 00 000 11
Q ss_pred CHHhh---cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 s~~Ea---~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++++. -.+.|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 33332 1478999999998877665543 455676655444
No 416
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.46 E-value=1.1 Score=49.77 Aligned_cols=74 Identities=24% Similarity=0.204 Sum_probs=50.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~ 166 (417)
.-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-
T Consensus 190 ~~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~ 262 (652)
T PRK12814 190 PKSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF 262 (652)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 3467 8999999999999999999998 998888765421 113444566765421
Q ss_pred CCc----CCHHhhcCcCCEEEEccC
Q 014834 167 GTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~~----~s~~Ea~~~ADIViLavp 187 (417)
++. .+.++.....|.||+++-
T Consensus 263 ~~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 263 NTVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CCcccCccCHHHHHhhcCEEEEEcC
Confidence 111 124444456899999875
No 417
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=90.20 E-value=1.4 Score=44.38 Aligned_cols=124 Identities=22% Similarity=0.245 Sum_probs=67.4
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--C--ceecCCC-cCCHHhhcCc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENGT-LGDIYETISG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G--~~~~~~~-~~s~~Ea~~~ 178 (417)
..++. .||.|+|.|+.|.|.|..+..+ |+ ++.+.+-...+..-++.+. | |...-.. ...--.+.++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 44555 8999999999999999998887 76 4444443333222222221 1 2110000 1112245678
Q ss_pred CCEEEEccCCchH------------HHHHHHHHhcC---CCCcEEEEec-Cchh-hhhhhcccCCCCCccEEEecc
Q 014834 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLSH-GFLL-GHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 179 ADIViLavpd~~~------------~~Vl~eI~~~l---k~gaiLi~a~-G~~i-~~~~~~~i~~~~dv~VI~v~P 237 (417)
+|+||+..-..+. .++++.|.|.+ .|++++++++ -+.+ .|..-+.-.+|++ +||..--
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGc 163 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGC 163 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCc
Confidence 9999997643322 24555665553 6788766444 4433 2332222256665 5665333
No 418
>PLN02477 glutamate dehydrogenase
Probab=90.04 E-value=0.64 Score=49.00 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEe
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGL 147 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~ 147 (417)
..++| ++|+|.|+|+.|...|+-|.+. |..|+ |.+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVVaVsD 237 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIVAVSD 237 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEC
Confidence 46889 9999999999999999999998 98876 444
No 419
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.00 E-value=1.7 Score=41.15 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.6
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
.++| ++|-|+|. |-+|.++++.|.+. |++|++..|+
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4778 99999998 89999999999998 9998877665
No 420
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.93 E-value=0.5 Score=41.29 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
+||.|||+|..|..++.+|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999999 87 5666654
No 421
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.92 E-value=0.89 Score=47.70 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=45.1
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99998777543333333455677642 11223456789999875
No 422
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=89.91 E-value=1 Score=45.75 Aligned_cols=64 Identities=9% Similarity=0.175 Sum_probs=46.0
Q ss_pred ccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-cCceecCCCcCCHHhhcCcCCEE
Q 014834 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
++| .||++||= +++..+++..+..- |. ++.+.....- ...... ..+.. +.++++++++||+|
T Consensus 155 l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDvv 221 (310)
T PRK13814 155 WNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDVI 221 (310)
T ss_pred cCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCEE
Confidence 678 89999998 59999999999887 98 7776654321 111111 12443 57899999999999
Q ss_pred EE
Q 014834 183 LL 184 (417)
Q Consensus 183 iL 184 (417)
..
T Consensus 222 y~ 223 (310)
T PRK13814 222 VT 223 (310)
T ss_pred EE
Confidence 87
No 423
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.88 E-value=2.5 Score=42.38 Aligned_cols=88 Identities=20% Similarity=0.185 Sum_probs=56.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.| .+|.|+|+|.+|...++-++. . | .+|++..+.+ ...+.+++.|... ..++..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~~-~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKHQ-EKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCcH-hHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 46 899999999999988877775 3 3 4666655543 3456666655432 1112222 4799998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
++........+++....++++-.+++
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 88743334456666667787766553
No 424
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.84 E-value=0.62 Score=47.65 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.6
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcE---EEEEecC--ChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEc
Q 014834 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~---ViVg~r~--~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLa 185 (417)
||+||| .|..|..+++-|.+. ++. +.+..+. ..+... -.|... .+.+. .+.++++|+||++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999998876 663 2222222 122221 112111 01111 2345889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99988877776653 357778877764
No 425
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.79 E-value=0.89 Score=47.72 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=52.1
Q ss_pred ccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--CceecCCCcCCHHhh
Q 014834 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (417)
Q Consensus 108 l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~~~~~~s~~Ea 175 (417)
|+| |+|||.|+- +-...++..|.+. |.+|++++... .+.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~a---~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPVA---MENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECchh---hHHHHhcCCCceE----eCCHHHH
Confidence 889 999999984 3345566666666 99998776532 2233222 2343 6789999
Q ss_pred cCcCCEEEEccCCchHHHH
Q 014834 176 ISGSDLVLLLISDAAQADN 194 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~V 194 (417)
+++||+|++++-.+...++
T Consensus 374 ~~~aDaivi~tew~ef~~~ 392 (414)
T COG1004 374 LKGADAIVINTEWDEFRDL 392 (414)
T ss_pred HhhCCEEEEeccHHHHhcc
Confidence 9999999999998777653
No 426
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=89.77 E-value=0.45 Score=49.33 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=42.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCceecC-CCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~~~~-~~~~s~~Ea~~~ADIViL 184 (417)
|++|||||-|..|.=|+..-+.- |+++++.+.. +.+....| ......+ .....+.|+++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~~~PA~~va--~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDADAPAAQVA--DRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCCCCchhhcc--cceeecCCCCHHHHHHHHhhCCEEEE
Confidence 48999999999999999988887 9998876533 22222222 2222100 001136678888998854
No 427
>PRK06153 hypothetical protein; Provisional
Probab=89.73 E-value=3.3 Score=43.50 Aligned_cols=87 Identities=11% Similarity=0.189 Sum_probs=54.6
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----------------C------hhhHHHH---H
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----------------G------SRSFAEA---R 158 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~----------------~------s~s~~~A---~ 158 (417)
.+.|++ .+|+|||+|-.|..++..|.+. |+ ++++.+.. + .+....+ .
T Consensus 171 q~kL~~-~~VaIVG~GG~GS~Va~~LAR~------GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 171 SAKLEG-QRIAIIGLGGTGSYILDLVAKT------PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHhh-CcEEEEcCCccHHHHHHHHHHc------CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 477888 9999999999999999999998 77 44443321 0 0100011 1
Q ss_pred Hc--CceecCCCcC-CHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 159 AA--GFTEENGTLG-DIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 159 ~~--G~~~~~~~~~-s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
+. ++......+. +..+.+.++|+||.|+-......++.+.
T Consensus 244 ~in~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~ 286 (393)
T PRK06153 244 NMRRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDY 286 (393)
T ss_pred HhCCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Confidence 11 2322111121 2234678999999999988877766653
No 428
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.68 E-value=5.6 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| ++|-|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999998 99987776653
No 429
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.68 E-value=2.1 Score=40.58 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=49.8
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
++| |++.|+|. |-+|.++++.|.+. |.+|++..++.....+...+.+ ...+.+=
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~Dl 60 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCDV 60 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEecC
Confidence 567 89999995 79999999999998 9988766554332222111111 1122221
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..+....++++++...+.+=.+|++++|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 61 GNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 22334456666666555333467777776
No 430
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.57 E-value=3.1 Score=42.69 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=57.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~~ADIViLav 186 (417)
.| .+|.|.|.|.+|...++-.+.. |.+|++..+.+++..+.+++.|.... +.. .....+.....|+|+-++
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC
Confidence 47 8999999999999999999888 88877665554444667777886420 000 001222334579999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
.... .+.+....++++-.++
T Consensus 251 G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 251 SAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CcHH---HHHHHHHhhcCCCEEE
Confidence 6432 2333334455555444
No 431
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.55 E-value=1.9 Score=41.20 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=32.0
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.+++ |++-|.|. |-+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDAD 41 (261)
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3667 89999996 78999999999998 999888777543
No 432
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.50 E-value=0.47 Score=48.55 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 57999999999999999999998 99998887753
No 433
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=89.44 E-value=1.5 Score=46.72 Aligned_cols=74 Identities=26% Similarity=0.236 Sum_probs=49.6
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~ 166 (417)
.-.| ++|.|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3357 8999999999999999999998 998887754321 112344567765421
Q ss_pred CC-c---CCHHhhcCcCCEEEEccC
Q 014834 167 GT-L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~-~---~s~~Ea~~~ADIViLavp 187 (417)
+. + .+.++.....|.||+++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~VilAtG 237 (485)
T TIGR01317 213 NTEIGVDISADELKEQFDAVVLAGG 237 (485)
T ss_pred CCEeCCccCHHHHHhhCCEEEEccC
Confidence 11 1 123344456899999874
No 434
>PRK07825 short chain dehydrogenase; Provisional
Probab=89.40 E-value=1.8 Score=41.41 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| ++|-|.|. |-+|.++++.|.+. |.+|++..|+.++..+...+.+ . .+ .-.+|+ .
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~---------~~-~~~~D~----~ 60 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAELG-L---------VV-GGPLDV----T 60 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhc-c---------ce-EEEccC----C
Confidence 567 89999996 78999999999998 9998877775433222222211 0 00 011232 2
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++.....+=.+|++.+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 88 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGV 88 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2333445666665544333467777776
No 435
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.36 E-value=4.6 Score=37.44 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~ 152 (417)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+.++
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~~ 41 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNENK 41 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHH
Confidence 567 89999997 67999999999998 9999888776543
No 436
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.29 E-value=1.6 Score=41.59 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=34.1
Q ss_pred cccchhhccCCCEEEEEcc-c-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 101 FKLLPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG~-G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++....-++| +++-|.|. | -+|.++++.|.+. |.+|++..+..
T Consensus 8 ~~~~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~~ 52 (262)
T PRK07831 8 YVPGHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIHE 52 (262)
T ss_pred CCCcccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 3334456778 99999997 6 5999999999998 99988776653
No 437
>PRK06392 homoserine dehydrogenase; Provisional
Probab=89.26 E-value=1 Score=46.05 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=49.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhh--hcCCcEEE-EEecCCh----h-----hHHHHHHcC-ceecCCCcCCHHhhc-C
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVK-VGLRKGS----R-----SFAEARAAG-FTEENGTLGDIYETI-S 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~--~~~G~~Vi-Vg~r~~s----~-----s~~~A~~~G-~~~~~~~~~s~~Ea~-~ 177 (417)
+||+|||+|++|..+++.|.+.-+. .+.+++|+ |.+++.. . .+....+.| +...+-...+.++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 3899999999999999998873111 12244433 3343321 0 111111112 110000001344443 4
Q ss_pred cCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~-~~Vl~eI~~~lk~gaiLi~a 211 (417)
++|+||=++|.... ...+.-+.+.|+.|.-|+.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 67999999874321 12333445556677755533
No 438
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.25 E-value=1.2 Score=46.50 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=44.7
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-HHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+.+ ++|.|||+|..|.+.++-|++. |.+|.+.+...... .+. .+.|+....+ ....+.++..|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~~--~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHTG--SLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEeC--CCCHHHhcCCCEEEEC
Confidence 456 8999999999999999999988 99987766443221 122 2337653110 1233456778987764
No 439
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=89.25 E-value=1.4 Score=44.20 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
++.|+. .+|.|||+|-.|..+|+||..+ |+ .+.+.+.
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D~ 51 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHDT 51 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEcC
Confidence 466777 8999999999999999999998 87 4555543
No 440
>PRK09242 tropinone reductase; Provisional
Probab=89.23 E-value=1.4 Score=41.71 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=52.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| |++-|+|. |.+|.++++.|.+. |.+|++..|..+...+...+ ..+.....++.++.+
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~------------l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDE------------LAEEFPEREVHGLAA 67 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHH------------HHhhCCCCeEEEEEC
Confidence 567 99999996 79999999999998 99988777754332221111 111111233333322
Q ss_pred ---CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 ---SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 ---pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....+.++++...+.+=.+|++++|.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2233445666666555444467777775
No 441
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.19 E-value=1.5 Score=46.50 Aligned_cols=75 Identities=24% Similarity=0.214 Sum_probs=50.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceec
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE 165 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~ 165 (417)
..-.+ ++|.|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+...
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 33467 8999999999999999999998 998888765321 12244566676532
Q ss_pred CCCc----CCHHhhcCcCCEEEEccC
Q 014834 166 NGTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 166 ~~~~----~s~~Ea~~~ADIViLavp 187 (417)
-++. .+..+.....|.||+++-
T Consensus 212 ~~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 212 TNVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred eCCEECCcCCHHHHHhhCCEEEEecC
Confidence 1111 123444557899999864
No 442
>PRK10637 cysG siroheme synthase; Provisional
Probab=89.17 E-value=2.4 Score=44.99 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=54.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.|+| ++|.|||-|.+|..=++.|.+. |.+|+|....-.+.. +.+.+..+....+.. . .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEEE
Confidence 57899 9999999999999999999998 888877644322222 333322232211121 2 344689999999
Q ss_pred ccCCchHHH
Q 014834 185 LISDAAQAD 193 (417)
Q Consensus 185 avpd~~~~~ 193 (417)
||.|....+
T Consensus 79 at~d~~~n~ 87 (457)
T PRK10637 79 ATDDDAVNQ 87 (457)
T ss_pred CCCCHHHhH
Confidence 999987754
No 443
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.13 E-value=1 Score=47.21 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHH--cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~--~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-.|.|||+|..|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 3799999999999999999999 9999877754332 2222233 36653100 1123456789998875
No 444
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=89.10 E-value=1.5 Score=44.99 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=49.2
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.++| .||++||- +++..+++..|... .|+++.+.... .....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999998 58899988876533 17777766543 2233455555564321 157899999999
Q ss_pred CEEEEc
Q 014834 180 DLVLLL 185 (417)
Q Consensus 180 DIViLa 185 (417)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999985
No 445
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.09 E-value=1.5 Score=45.62 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=26.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhh
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s 133 (417)
++.|+. .+|.|||+|-.|..++++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 577788 9999999999999999999998
No 446
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.09 E-value=5.3 Score=37.12 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=57.3
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhh-----cCcCCE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea-----~~~ADI 181 (417)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..++. ...+.+++.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRSD-EKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 356 8999999999999999988888 88877665543 34555666664320 1001112221 246899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|+.++... ..+......++++..++..+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99988863 23334444555655555433
No 447
>PRK05717 oxidoreductase; Validated
Probab=89.08 E-value=2 Score=40.66 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=31.4
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
-.|+| |+|-|+|. |.+|.++++.|.+. |.+|++..+.
T Consensus 6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 35778 99999995 79999999999998 9988776654
No 448
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.06 E-value=4 Score=42.19 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=61.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc-CCHHh----hc--CcCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~-~s~~E----a~--~~ADI 181 (417)
.| .+|.|+|.|.+|...++.++.. |..+++..+......+.+++.|+...+... .+..+ .. ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 46 8999999999999999988888 887555444445567888889874311110 12222 22 24799
Q ss_pred EEEccCCchH-----------HHHHHHHHhcCCCCcEEEEe
Q 014834 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~~~-----------~~Vl~eI~~~lk~gaiLi~a 211 (417)
||-++-.... ...+++....++++-.+++.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 9998875421 23555555667776655543
No 449
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.03 E-value=2.9 Score=42.77 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=51.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhh--hcCC--cEEE-EEecCCh----------hhHHHHHHcCceec--C--C-CcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSD--IVVK-VGLRKGS----------RSFAEARAAGFTEE--N--G-TLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~--~~~G--~~Vi-Vg~r~~s----------~s~~~A~~~G~~~~--~--~-~~~s 171 (417)
.+|+|+|+|++|...++-|.+.... ...| ++|+ |.+++.. +..+...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773111 1125 3432 3333211 11111112221000 0 0 0125
Q ss_pred HHhhc--CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 172 ~~Ea~--~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
.+|.+ .++|+||=++++....+++.++ ++.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 4799999999876666666554 34555444
No 450
>PRK13984 putative oxidoreductase; Provisional
Probab=88.98 E-value=1.5 Score=47.91 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=50.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------hhhHHHHHHcCceecCCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEENGT 168 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~--------------------s~s~~~A~~~G~~~~~~~ 168 (417)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.+ .+..+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 99888775532 112345566776532111
Q ss_pred -c---CCHHhhcCcCCEEEEccC
Q 014834 169 -L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 169 -~---~s~~Ea~~~ADIViLavp 187 (417)
+ .+.++.....|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 123445557999999986
No 451
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=88.84 E-value=1.6 Score=45.23 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred hccCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCceecCCCcC
Q 014834 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~~~~~~~~~ 170 (417)
.|+| +||+|+|.| ++..+++..+... |++|.+..... +...+. +++.|.... .+.
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3678 899999853 4557778877776 99887765432 222233 334564320 157
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|+++++|+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
No 452
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=88.62 E-value=1.1 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 014834 113 QIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s 133 (417)
||.|||+|-.|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999998
No 453
>PRK14031 glutamate dehydrogenase; Provisional
Probab=88.58 E-value=2.8 Score=44.75 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV 145 (417)
..|+| ++|+|.|+||.|...|+.|.+. |..|++
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVa 256 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVT 256 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEE
Confidence 46899 9999999999999999999998 998765
No 454
>PRK07411 hypothetical protein; Validated
Probab=88.54 E-value=1.4 Score=45.99 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=54.9
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------hhhHHHHH---Hc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---AA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~--~-----------------s~s~~~A~---~~- 160 (417)
++.|+. .+|.|||+|-.|..++++|... |+ ++.+.+.. + .+....++ +.
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 578888 9999999999999999999998 76 34443321 0 01111111 11
Q ss_pred -Ccee--cCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+.+ ....+. +..+.+.++|+||.|+=+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 011111 23567899999999988777666776643
No 455
>PRK06182 short chain dehydrogenase; Validated
Probab=88.54 E-value=3.6 Score=39.44 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---HhhcC-------
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea~~------- 177 (417)
++ ++|.|.|. |-+|.++++.|.+. |++|++..|+.++ .+...+.++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999996 79999999999998 9998877776443 2222233432211112232 23333
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799998754
No 456
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.43 E-value=1.6 Score=45.60 Aligned_cols=67 Identities=28% Similarity=0.307 Sum_probs=44.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH----HHHHHcCceecCCCcCCH---HhhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDI---YETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~----~~A~~~G~~~~~~~~~s~---~Ea~~~ADIViLa 185 (417)
||.|||+|..|.+.|+.|.+. |+.|.+.++...... ..-++.|+...-+...+. .+...+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 799999999999999999999 999987776533212 123355765421111111 1356789999884
No 457
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.38 E-value=4 Score=41.21 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=57.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~~ADIViLav 186 (417)
.| .++.|+|.|.+|...++-++.. |.+|++..+.+++....+++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8999999999999999998888 88877666554444444455776420 000 001222334579999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.... .++.....++++..++..
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEE
Confidence 7432 333344556666655543
No 458
>PRK09414 glutamate dehydrogenase; Provisional
Probab=88.30 E-value=1.9 Score=45.90 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=30.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg 146 (417)
..++| ++|+|.|+|+.|...|+.|.+. |..|+..
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVav 261 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTC 261 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEE
Confidence 46889 9999999999999999999988 9877654
No 459
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=88.26 E-value=2.2 Score=41.33 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=54.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.| ++|.-||+|+ | .++..+... |..-+++.+.++...+.|++ .++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344445555 55424566655555555544 33310 0001010014799887
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
-+.......+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665555667888899999999887754
No 460
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.21 E-value=2.9 Score=44.11 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=63.1
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| +||+|+|+ .+-+..++..|++. |.+|.+++..-.. ....+..|... + + ..++
T Consensus 311 ~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~----~-~-~~~~ 376 (425)
T PRK15182 311 NVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGIIP----V-S-EVKS 376 (425)
T ss_pred CCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCccc----c-h-hhhh
Confidence 4788 99999999 57788899999988 9999877643111 11122344321 1 1 2357
Q ss_pred CcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 014834 177 SGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~V-l~eI~~~lk~gaiLi~a~G~ 214 (417)
++||+|++++.-....++ ++.+...++...+|++.-++
T Consensus 377 ~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 377 SHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred cCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 789999999998777643 55666666644577775554
No 461
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.19 E-value=1.4 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.|+| ++|+|=|+||.|.-.|+.|.+. |.+|++..++..
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 988876665533
No 462
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.11 E-value=1.8 Score=40.70 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
++| ++|-|.|. |.+|.++++.|.+. |.+|++..|..+
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQD 42 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 89999997 89999999999998 999887777643
No 463
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.04 E-value=1.1 Score=40.56 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=49.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---HhhcCcCCEEEEccCCc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea~~~ADIViLavpd~ 189 (417)
++.|+|.|..|..++..|++. |++++-+.+.+.... ...-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 998865555432211 112246553 3333 33444568899999754
Q ss_pred hH-HHHHHHHHh
Q 014834 190 AQ-ADNYEKIFS 200 (417)
Q Consensus 190 ~~-~~Vl~eI~~ 200 (417)
.. .++++.+.+
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 44 456555543
No 464
>PRK12828 short chain dehydrogenase; Provisional
Probab=87.83 E-value=5 Score=36.89 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=51.3
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| ++|-|+|. |.+|.++++.|.+. |.+|++..|+..+..+...+. . ....+++..-+
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~--~------------~~~~~~~~~D~ 63 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAAPLSQTLPGV--P------------ADALRIGGIDL 63 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChHhHHHHHHHH--h------------hcCceEEEeec
Confidence 567 99999995 89999999999998 999887777543322222111 0 01123333333
Q ss_pred CCc-hHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDA-AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~-~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+. ...++++++.....+=.+|++.+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 64 VDPQAARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCcCEEEECCcc
Confidence 333 3345666666544333456666664
No 465
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=87.72 E-value=8 Score=31.90 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=53.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH----HcCceecCCCcCC----HHhhcCcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~----~~G~~~~~~~~~s----~~Ea~~~AD 180 (417)
.+ ++|.=||+|.=.. +..+.+.. .+.+| ++.+.+....+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~G~~--~~~l~~~~----~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSGSI--TIEAARLV----PNGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCCHH--HHHHHHHC----CCceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 7899999998333 33333320 02355 45554444344433 2332100000112 112335789
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+|++.-++....++++++.+.|+||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999987653
No 466
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.71 E-value=0.72 Score=44.61 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=44.0
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhc------Cc-CCE
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~------~~-ADI 181 (417)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........+ +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789997 99999999999998 999988888654321 1222211111222 34455 45 899
Q ss_pred EEEccCC
Q 014834 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
No 467
>PRK07060 short chain dehydrogenase; Provisional
Probab=87.69 E-value=2.4 Score=39.50 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~ 152 (417)
++| +++.|.|. |.+|..+++.|.+. |++|++..|+.++
T Consensus 7 ~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~ 45 (245)
T PRK07060 7 FSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAA 45 (245)
T ss_pred cCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHH
Confidence 677 89999998 79999999999998 9998877775433
No 468
>PRK09186 flagellin modification protein A; Provisional
Probab=87.67 E-value=2.2 Score=40.08 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| |+|-|.|. |.+|.++|+.|.+. |++|++..|+.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~ 38 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADIDK 38 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecCh
Confidence 467 89999996 69999999999998 99887776653
No 469
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.66 E-value=2.5 Score=40.31 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred ccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
++| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 5 l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl--- 64 (252)
T PRK06079 5 LSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV--- 64 (252)
T ss_pred cCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC---
Confidence 677 999999986 7999999999998 9998877664 2222221111 0 00000 112332
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|+
T Consensus 65 -~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 -ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred -CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 33444566777766544332367777776
No 470
>PRK07877 hypothetical protein; Provisional
Probab=87.61 E-value=2.3 Score=47.93 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred cchHhhhhhcccchhhhcccccccc------cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecC
Q 014834 78 VFKKDAISLANRDEFIVRGGRDLFK------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK 149 (417)
Q Consensus 78 ~~~~~~~~~~~~~e~~vr~g~~~f~------~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~ 149 (417)
+|+...+.+-+.+|+.-. |+... .+++.|+. .+|+|||+| .|..+|..|..+ |+ ++++.+..
T Consensus 71 pw~~~~v~~~~~~~~~~~--r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D 140 (722)
T PRK07877 71 PWRRTVVHLLGPREFRAV--RLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFD 140 (722)
T ss_pred cchhheeecCCHHHhhHH--HhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCC
Confidence 688888888888886411 23222 24788888 999999999 899999999988 64 44443321
Q ss_pred -----------------C-hhhHHHHHH---c--Ccee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHH
Q 014834 150 -----------------G-SRSFAEARA---A--GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEK 197 (417)
Q Consensus 150 -----------------~-s~s~~~A~~---~--G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~e 197 (417)
+ .|....++. . .+.+ .+..+ .+.++.++++|+|+-|+-+-...-++.+
T Consensus 141 ~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~ 215 (722)
T PRK07877 141 TLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLRE 215 (722)
T ss_pred EEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 0 011111111 0 1111 01111 2466788999999999988766666654
No 471
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.58 E-value=2 Score=40.56 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=31.8
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
.|+| |+|.|.|. |.+|.++++.|.+. |++|++..|+.
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDP 44 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 3678 99999995 89999999999998 99988777653
No 472
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=87.56 E-value=4.5 Score=41.91 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH----------HhhcC-cCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS-GSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~----------~Ea~~-~AD 180 (417)
.+++|+|+|-+|.|-.++++.. |-..+|+.+.+....+.|++.|.+. +.+. .++.. .+|
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCCCCC
Confidence 6899999999999999999998 8766777777777789999999864 2222 23334 688
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
..|-++-...
T Consensus 257 ~~~e~~G~~~ 266 (366)
T COG1062 257 YAFECVGNVE 266 (366)
T ss_pred EEEEccCCHH
Confidence 8888877644
No 473
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.47 E-value=3.4 Score=41.35 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~ 163 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. +...+.+++.|+.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGAD 212 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCc
Confidence 46 8999999999999999999988 8887665554 3456777778863
No 474
>PRK01581 speE spermidine synthase; Validated
Probab=87.35 E-value=4.5 Score=42.26 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=66.2
Q ss_pred hhhhhcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc
Q 014834 82 DAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA 160 (417)
Q Consensus 82 ~~~~~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~ 160 (417)
-.++|...+|.++-..= =..........++|.+||+| .|.+....|+.. +. +|. ....++.-.+.|++.
T Consensus 124 G~~Q~se~DE~iYHE~L--vhp~m~~h~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It-~VEIDpeVIelAr~~ 193 (374)
T PRK01581 124 KQLQFSSVDEQIYHEAL--VHPIMSKVIDPKRVLILGGG-DGLALREVLKYE------TVLHVD-LVDLDGSMINMARNV 193 (374)
T ss_pred CeeccccccHHHHHHHH--HHHHHHhCCCCCEEEEECCC-HHHHHHHHHhcC------CCCeEE-EEeCCHHHHHHHHhc
Confidence 34456666676533100 00011223334899999998 455555555443 33 444 444556667777752
Q ss_pred ---------CceecCC---CcCCHHhhc----CcCCEEEEccCCchH--------HHHHHHHHhcCCCCcEEEEecC
Q 014834 161 ---------GFTEENG---TLGDIYETI----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 161 ---------G~~~~~~---~~~s~~Ea~----~~ADIViLavpd~~~--------~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
++.. .+ ...|..+.+ ..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 194 ~~L~~~~~~~~~D-pRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 194 PELVSLNKSAFFD-NRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cccchhccccCCC-CceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 1100 00 013333322 346999999876421 4577788999999998765544
No 475
>PRK06197 short chain dehydrogenase; Provisional
Probab=87.33 E-value=2.4 Score=41.56 Aligned_cols=48 Identities=17% Similarity=0.024 Sum_probs=37.5
Q ss_pred ccccccccchhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 96 GGRDLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 96 ~g~~~f~~~~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
-+.|..... ..++| |+|-|.|. |-+|.++++.|.+. |.+|++..|+.+
T Consensus 3 ~~~~~~~~~-~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~~ 51 (306)
T PRK06197 3 MTKWTAADI-PDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNLD 51 (306)
T ss_pred CCCCCcccc-ccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 345655433 56889 99999995 79999999999998 999887777533
No 476
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=87.31 E-value=2.9 Score=39.76 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| +++-|+|. |-+|.++++.|.+. |.+|++..|..
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999996 57999999999999 99988777654
No 477
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.26 E-value=4.3 Score=40.42 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=34.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCChhhHHHHHHcCc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V-iVg~r~~s~s~~~A~~~G~ 162 (417)
.| ++|.|.|.|.+|...++-++.. |.++ ++..+. ....+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~-~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDIN-SEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCC-HHHHHHHHHcCC
Confidence 56 8999999999999999999888 8864 444444 344566777775
No 478
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.22 E-value=1.8 Score=40.87 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| |++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 43 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARHL 43 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 678 99999997 68999999999998 99988777653
No 479
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.20 E-value=1.2 Score=48.85 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=49.1
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH--------cC------ceecCCCcC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AG------FTEENGTLG 170 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~--------~G------~~~~~~~~~ 170 (417)
+-.+| ++|.|.|. |.+|.++++.|.+. |++|++..|+..+....+.+ .| +....+.+.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 44566 89999996 89999999999998 99998887765443222211 11 111011233
Q ss_pred C---HHhhcCcCCEEEEccC
Q 014834 171 D---IYETISGSDLVLLLIS 187 (417)
Q Consensus 171 s---~~Ea~~~ADIViLavp 187 (417)
+ +.+++.++|+||.+.-
T Consensus 149 D~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CHHHHHHHhcCCCEEEEccc
Confidence 3 3456788999998864
No 480
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.97 E-value=3.6 Score=38.47 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=30.9
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|+| ++|-|+|. |.+|..+++.|.+. |.+|++..|+.
T Consensus 3 ~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~ 39 (252)
T PRK06138 3 LAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA 39 (252)
T ss_pred CCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence 567 89999996 79999999999998 99887777654
No 481
>PLN02214 cinnamoyl-CoA reductase
Probab=86.79 E-value=2.4 Score=42.65 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=48.8
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHH--c---CceecCCCcC---CHHhh
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARA--A---GFTEENGTLG---DIYET 175 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~--~---G~~~~~~~~~---s~~Ea 175 (417)
..+++ ++|.|.|. |-+|..+++.|.+. |++|++..|..+..... ... . .+......+. +..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 44667 89999997 99999999999999 99987766653321111 011 1 1111011122 34567
Q ss_pred cCcCCEEEEccCC
Q 014834 176 ISGSDLVLLLISD 188 (417)
Q Consensus 176 ~~~ADIViLavpd 188 (417)
++.+|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8889999988653
No 482
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=86.61 E-value=2.3 Score=41.34 Aligned_cols=64 Identities=25% Similarity=0.207 Sum_probs=45.8
Q ss_pred EEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCchHHHHHHHHHhcCCCCc-EEEEecCc
Q 014834 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 144 iVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~ 214 (417)
.|+++..++..+.+.+.|+.. +.+++|++ .+.|+|++|+|+..+.++..++.. .|+ +++.+.|.
T Consensus 6 aV~D~~~e~a~~~a~~~g~~~----~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~---aGkhVl~~s~gA 71 (229)
T TIGR03855 6 AVYDRNPKDAKELAERCGAKI----VSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK---NGKDLLIMSVGA 71 (229)
T ss_pred EEECCCHHHHHHHHHHhCCce----ECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH---CCCCEEEECCcc
Confidence 445555556666777788654 67888875 679999999999999888876544 454 55666553
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.61 E-value=3.4 Score=38.51 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 79999999999998 99988777764
No 484
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=86.57 E-value=2.3 Score=41.52 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=45.8
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH--HHHHH-c----CceecCCCc---CCHHhhcC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-A----GFTEENGTL---GDIYETIS 177 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~--~~A~~-~----G~~~~~~~~---~s~~Ea~~ 177 (417)
+| ++|.|.| .|-+|..+++.|.+. |++|++..|+..... ..... . .+....+.+ ....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999999 999877666533211 11111 1 111101112 23556788
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
++|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999988764
No 485
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=86.57 E-value=4.4 Score=44.14 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=46.9
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCC-cEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
.++| .||++||- +++..+++..+... | ++|.+..... ....+.+++.|.... .+.+++|++++
T Consensus 171 ~l~g-lkVa~vGD~~~~rva~Sl~~~l~~~------g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~--i~~d~~eav~~ 241 (525)
T PRK13376 171 DNSF-IHIALVGDLLHGRTVHSKVNGLKIF------KNVKVDLIAPEELAMPEHYVEKMKKNGFEVR--IFSSIEEYLSQ 241 (525)
T ss_pred CcCC-CEEEEECCCCCCcHHHHHHHHHHhc------CCcEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcc
Confidence 3677 89999998 58999999998877 7 7877654332 122355666664320 15789999999
Q ss_pred CCE
Q 014834 179 SDL 181 (417)
Q Consensus 179 ADI 181 (417)
||+
T Consensus 242 AD~ 244 (525)
T PRK13376 242 KDV 244 (525)
T ss_pred CCc
Confidence 995
No 486
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=86.53 E-value=2.7 Score=43.17 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=46.1
Q ss_pred c-cCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCcEEEEEec-CC----hhhHHH----HHHcCceecCCCcC
Q 014834 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 108 l-~gmkkIgIIG~G-------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~----s~s~~~----A~~~G~~~~~~~~~ 170 (417)
+ +| .||+|++.| ++..+++..+... |++|.+... +. ..-.+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 68 899776543 6788888877776 998877765 31 111222 344563220 156
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8999999999999854
No 487
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.53 E-value=5.7 Score=39.23 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=55.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceec-CCCcCCH---HhhcC--cCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~---~Ea~~--~ADI 181 (417)
.| .+|.|+|.|.+|...++-++.. |.+ |++..+. +...+.+++.|+... +....+. .+... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~~-~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDPS-PERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 47 8999999999999999998888 887 7665444 445677788886320 1000011 12222 5799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9988876543 222233455555444
No 488
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=86.49 E-value=4.5 Score=40.06 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=56.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCC-HHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s-~~Ea~~~ADIViLav 186 (417)
+| .+|.|.|.|.+|.+.++.++.. |.+|++..+.. ...+.+.+.|+... +..-.+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRSP-SKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 46 7999999999999999988888 88876665553 34566667775320 000001 112235679999988
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+... .+++....++++..++..
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEEEE
Confidence 8652 233444555555554433
No 489
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=86.37 E-value=2 Score=49.93 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=50.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecC--
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN-- 166 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~-- 166 (417)
+| |||+|||.|.-|.+-|..|.+. |++|+|+.+.+. +..+..++.|+...-
T Consensus 305 ~g-kkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~ 377 (944)
T PRK12779 305 VK-PPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNF 377 (944)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeE
Confidence 47 9999999999999999999999 999988865321 123445566765210
Q ss_pred --CCcCCHHhhcC-cCCEEEEccC
Q 014834 167 --GTLGDIYETIS-GSDLVLLLIS 187 (417)
Q Consensus 167 --~~~~s~~Ea~~-~ADIViLavp 187 (417)
+...+.+++.+ ..|.|||++-
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtG 401 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTG 401 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCC
Confidence 11124666655 6899999874
No 490
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.33 E-value=4.7 Score=39.43 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=57.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh-hcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E-a~~~ADIViLavp 187 (417)
+| .+|.|.|.|.+|.+.++.++.. |.+|++..+.. ...+.+++.|... ..+..+ .-+..|+++.+.+
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcCC
Confidence 46 7999999999999999988888 88887665554 3456667777632 111111 2235788888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
.. ..++++...++++..++.
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEE
Confidence 43 345556666766665553
No 491
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=86.26 E-value=6.7 Score=37.33 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=56.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhh--cCcCCEEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea--~~~ADIViL 184 (417)
-+| .+|.|.|.|.+|.+.++..+.. |.+ |++..+. ....+.+++.|.. +......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~~~~-~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGVDPD-AARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEECCC-HHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999999988887 887 6554444 3445677777721 1111111111 235899998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344445566666655543
No 492
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.22 E-value=2.3 Score=44.50 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=44.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-HHHHHHcCceecCCCcC-CHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViLa 185 (417)
++++++|.|||+|..|.+-+..|+.. +.|++|.+.+...... .+.. +.|+... .. ...+.+.++|+||..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~~~~v~~~D~~~~~~~~~~l-~~g~~~~---~g~~~~~~~~~~d~vV~S 75 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QPQLTVKVIDTRETPPGQEQL-PEDVELH---SGGWNLEWLLEADLVVTN 75 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CCCCeEEEEeCCCCchhHHHh-hcCCEEE---eCCCChHHhccCCEEEEC
Confidence 45568999999999999999988876 1126787766543221 1222 2376531 12 123446789988875
No 493
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=86.22 E-value=1.4 Score=41.63 Aligned_cols=79 Identities=20% Similarity=0.066 Sum_probs=41.5
Q ss_pred EEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCChhhH-------HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSF-------AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~ViVg~r~~s~s~-------~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
||+|||.|+.-.+. ...+....++. .+-++...+.+.++.. +..++.|....=..+.|.+|++++||+||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l-~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEEL-SGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTS-TEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccC-CCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999987663 33233221111 0125555554433211 222334432111225789999999999999
Q ss_pred ccCCchHH
Q 014834 185 LISDAAQA 192 (417)
Q Consensus 185 avpd~~~~ 192 (417)
.+-..-..
T Consensus 80 ~irvGg~~ 87 (183)
T PF02056_consen 80 QIRVGGLE 87 (183)
T ss_dssp ---TTHHH
T ss_pred EeeecchH
Confidence 98876554
No 494
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=86.11 E-value=2.8 Score=44.85 Aligned_cols=77 Identities=27% Similarity=0.296 Sum_probs=56.9
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCce
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFT 163 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~ 163 (417)
.+....| ++|+|||.|.-|.+-|.-|... |++|+++.+... +..+.-++.|+.
T Consensus 117 ~~~~~tg-~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 117 LPGSRTG-KKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CCCCCCC-CEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 4568888 9999999999999999999999 998887654321 234455556754
Q ss_pred ecC----CCcCCHHhhcCcCCEEEEccC
Q 014834 164 EEN----GTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 164 ~~~----~~~~s~~Ea~~~ADIViLavp 187 (417)
... |...+.+++.++-|.|++++.
T Consensus 190 ~~~~~~vG~~it~~~L~~e~Dav~l~~G 217 (457)
T COG0493 190 FKLNVRVGRDITLEELLKEYDAVFLATG 217 (457)
T ss_pred EEEcceECCcCCHHHHHHhhCEEEEecc
Confidence 321 113468899898999999875
No 495
>PRK06500 short chain dehydrogenase; Provisional
Probab=86.11 E-value=3.9 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++| ++|-|.|. |.+|.++++.|.+. |.+|++..|+
T Consensus 4 ~~~-k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~ 39 (249)
T PRK06500 4 LQG-KTALITGGTSGIGLETARQFLAE------GARVAITGRD 39 (249)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCC
Confidence 567 89999996 89999999999999 9988776665
No 496
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.96 E-value=4 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=30.1
Q ss_pred ccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++| |++-|.|.+ -+|.++|+.|.+. |.+|++..|.
T Consensus 4 l~~-k~~lITGas~~~GIG~aia~~la~~------G~~vil~~r~ 41 (262)
T PRK07984 4 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQN 41 (262)
T ss_pred cCC-CEEEEeCCCCCccHHHHHHHHHHHC------CCEEEEEecc
Confidence 577 899999997 4999999999998 9998776664
No 497
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.96 E-value=7.2 Score=39.16 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=55.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceec-CCCcCCHH----hhc--CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~----Ea~--~~AD 180 (417)
.| ++|.|+|.|.+|...++-++.. |.+ |++..+. ....+.+++.|.... +....+.. +.. ...|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~-~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDID-DRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999988888 885 6544444 455777788886310 10011221 122 2478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+|+=++... +.++.....++++-.+++.
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 888887642 2233333455666555533
No 498
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=85.90 E-value=2.8 Score=49.41 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=60.7
Q ss_pred cccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHH
Q 014834 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEAR 158 (417)
Q Consensus 99 ~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~ 158 (417)
|-.+-.|..-.| ++|+|||-|.-|.+-|..|-+. |+.|+|+.|.+- +..++-.
T Consensus 1774 wm~p~pp~~rtg-~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~ 1846 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTG-KRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLE 1846 (2142)
T ss_pred CCccCCcccccC-cEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHH
Confidence 545555677788 9999999999999999999998 999999877532 3345555
Q ss_pred HcCceec----CCCcCCHHhhcCcCCEEEEccC
Q 014834 159 AAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 159 ~~G~~~~----~~~~~s~~Ea~~~ADIViLavp 187 (417)
+.|+... -|-..+++++-+.-|.|++++-
T Consensus 1847 ~egi~f~tn~eigk~vs~d~l~~~~daiv~a~g 1879 (2142)
T KOG0399|consen 1847 QEGIRFVTNTEIGKHVSLDELKKENDAIVLATG 1879 (2142)
T ss_pred hhCceEEeeccccccccHHHHhhccCeEEEEeC
Confidence 6675421 1112468889999999999853
No 499
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=85.85 E-value=4.3 Score=38.33 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=31.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
+++ ++|-|.|. |-+|.++++.|.+. |++|++..|...
T Consensus 4 l~~-~~vlItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~ 41 (257)
T PRK07067 4 LQG-KVALLTGAASGIGEAVAERYLAE------GARVVIADIKPA 41 (257)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEcCCHH
Confidence 556 88999995 89999999999998 999887776543
No 500
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.82 E-value=2.9 Score=38.91 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| +++.|+|. |-+|.++++.|.+. |..|++..|..
T Consensus 3 ~~~-~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKD-KVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQ 39 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999997 99999999999998 99887776653
Done!