BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014835
         (417 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 121 IDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQL 179
           ID      LPD       LETL + R  +R +P S+  L+ L+ L   +I+  PE  +L
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL---SIRACPELTEL 166



 Score = 32.3 bits (72), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLEXXXXXXXXXXXXXXXEISNCPIF 69
           ++ +L L   GI+ LP+SI  L NLK L I + S L                ++  C   
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTAL 242

Query: 70  ERFTEIPSCNIDGGIGIERLASCRLVLEDCXXXXXXXXXXCMFKSLTSLEIIDCQYFMIL 129
             +       I GG    R    RL+L+DC               L  L++  C     L
Sbjct: 243 RNYPP-----IFGG----RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 130 PDELGNLEA 138
           P  +  L A
Sbjct: 294 PSLIAQLPA 302


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 129 LPDELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSNIK---RLPEYLQ-----L 179
           +P EL  ++ LETLI+D   +  E+P  L   ++L  + LSN +    +P+++       
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 180 HLQLPENGLEG-IPEYLR--RSPRKLTLDPNELSEIVKDGWMKQS 221
            L+L  N   G IP  L   RS   L L+ N  +  +     KQS
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 129 LPDELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSNIK---RLPEYLQ-----L 179
           +P EL  ++ LETLI+D   +  E+P  L   ++L  + LSN +    +P+++       
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514

Query: 180 HLQLPENGLEG-IPEYLR--RSPRKLTLDPNELSEIVKDGWMKQS 221
            L+L  N   G IP  L   RS   L L+ N  +  +     KQS
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,320,466
Number of Sequences: 62578
Number of extensions: 443150
Number of successful extensions: 869
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 11
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)