Query 014835
Match_columns 417
No_of_seqs 581 out of 3061
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.9E-30 1.1E-34 285.4 28.5 268 2-280 649-1005(1153)
2 PLN00113 leucine-rich repeat r 99.8 7.5E-19 1.6E-23 194.4 13.9 185 10-203 119-321 (968)
3 PLN00113 leucine-rich repeat r 99.8 6.7E-19 1.4E-23 194.8 12.2 187 10-203 141-345 (968)
4 KOG0617 Ras suppressor protein 99.8 1.4E-20 3E-25 158.7 -4.8 163 2-207 25-191 (264)
5 KOG0444 Cytoskeletal regulator 99.7 2.3E-19 5E-24 177.0 -3.7 186 10-203 104-329 (1255)
6 PLN03210 Resistant to P. syrin 99.7 3.1E-16 6.7E-21 175.3 16.7 137 2-153 603-741 (1153)
7 KOG4194 Membrane glycoprotein 99.7 1.8E-17 3.8E-22 162.9 2.1 162 10-171 174-352 (873)
8 KOG0444 Cytoskeletal regulator 99.6 6.1E-18 1.3E-22 167.1 -2.7 184 10-207 79-311 (1255)
9 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.5E-22 137.9 -4.5 143 6-190 52-195 (264)
10 KOG4194 Membrane glycoprotein 99.6 1.4E-15 2.9E-20 149.8 3.3 188 3-207 117-335 (873)
11 KOG0472 Leucine-rich repeat pr 99.5 1.9E-16 4.1E-21 149.6 -8.1 192 3-207 83-293 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 4.2E-16 9.1E-21 147.3 -6.8 171 10-203 138-310 (565)
13 PRK15387 E3 ubiquitin-protein 99.4 2.7E-12 5.8E-17 135.5 12.4 58 137-207 382-440 (788)
14 KOG4237 Extracellular matrix p 99.4 5.3E-14 1.1E-18 133.0 -1.1 202 2-212 60-345 (498)
15 PRK15370 E3 ubiquitin-protein 99.3 5E-12 1.1E-16 133.9 11.9 183 2-207 192-385 (754)
16 PRK15370 E3 ubiquitin-protein 99.3 2.7E-12 5.8E-17 136.0 7.8 181 3-206 214-405 (754)
17 KOG0618 Serine/threonine phosp 99.3 8E-14 1.7E-18 143.9 -4.6 183 10-203 242-465 (1081)
18 PRK15387 E3 ubiquitin-protein 99.3 6.5E-11 1.4E-15 125.1 14.7 50 10-66 223-272 (788)
19 KOG0532 Leucine-rich repeat (L 99.2 1.9E-13 4.2E-18 134.6 -5.4 174 11-207 77-251 (722)
20 KOG0618 Serine/threonine phosp 99.2 6.8E-13 1.5E-17 137.2 -4.6 184 10-205 220-446 (1081)
21 KOG0532 Leucine-rich repeat (L 99.1 2.4E-12 5.1E-17 127.0 -3.5 175 3-201 90-271 (722)
22 cd00116 LRR_RI Leucine-rich re 99.1 2E-11 4.3E-16 117.9 2.4 191 10-203 24-263 (319)
23 cd00116 LRR_RI Leucine-rich re 99.1 1.6E-11 3.5E-16 118.5 0.7 191 10-203 52-291 (319)
24 KOG4237 Extracellular matrix p 99.1 6E-12 1.3E-16 119.2 -3.9 194 2-202 81-358 (498)
25 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5E-15 100.1 3.2 57 111-167 86-147 (175)
26 COG4886 Leucine-rich repeat (L 99.0 4.1E-10 9E-15 112.3 4.6 171 10-203 117-290 (394)
27 PLN03150 hypothetical protein; 98.9 3.8E-09 8.2E-14 111.2 7.3 106 33-171 419-526 (623)
28 PLN03150 hypothetical protein; 98.8 5.1E-09 1.1E-13 110.2 7.7 103 92-201 421-526 (623)
29 COG4886 Leucine-rich repeat (L 98.8 2.7E-09 5.8E-14 106.5 3.8 157 2-173 130-290 (394)
30 KOG1259 Nischarin, modulator o 98.8 5.1E-10 1.1E-14 102.9 -1.8 124 10-171 285-410 (490)
31 KOG3207 Beta-tubulin folding c 98.7 4.1E-09 8.9E-14 101.5 0.5 153 10-171 122-282 (505)
32 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.3E-13 89.6 2.7 117 16-171 4-124 (175)
33 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.4E-13 98.6 0.6 152 10-171 147-312 (505)
34 PF13855 LRR_8: Leucine rich r 98.6 5.4E-08 1.2E-12 69.9 3.6 58 10-67 2-60 (61)
35 KOG4658 Apoptotic ATPase [Sign 98.5 5.6E-08 1.2E-12 105.1 3.5 155 3-169 516-677 (889)
36 KOG1259 Nischarin, modulator o 98.5 3.4E-08 7.3E-13 91.1 0.5 32 10-41 215-246 (490)
37 PRK15386 type III secretion pr 98.5 5.9E-07 1.3E-11 88.1 8.8 59 10-73 53-111 (426)
38 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 66.6 3.6 59 113-171 1-60 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.3 4.9E-07 1.1E-11 97.9 5.1 174 10-203 546-730 (889)
40 KOG2120 SCF ubiquitin ligase, 98.2 4E-08 8.6E-13 90.6 -6.4 175 10-201 186-374 (419)
41 KOG1909 Ran GTPase-activating 98.1 2.1E-07 4.5E-12 87.6 -2.1 188 7-203 89-311 (382)
42 KOG0531 Protein phosphatase 1, 98.1 5.9E-07 1.3E-11 90.3 -0.9 54 10-65 96-149 (414)
43 PRK15386 type III secretion pr 98.0 1.3E-05 2.8E-10 78.8 7.7 134 28-200 48-187 (426)
44 KOG0531 Protein phosphatase 1, 97.9 1E-06 2.2E-11 88.6 -2.1 126 10-151 73-200 (414)
45 KOG1909 Ran GTPase-activating 97.9 1.5E-06 3.2E-11 82.0 -2.1 183 10-203 31-254 (382)
46 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.6E-10 52.8 3.1 36 10-45 2-37 (44)
47 KOG2982 Uncharacterized conser 97.8 6.6E-06 1.4E-10 76.2 1.0 162 10-171 72-260 (418)
48 KOG1859 Leucine-rich repeat pr 97.8 5.5E-07 1.2E-11 92.0 -6.9 124 10-171 165-290 (1096)
49 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.6E-10 50.9 3.8 35 137-171 1-35 (44)
50 KOG2120 SCF ubiquitin ligase, 97.7 4.3E-06 9.4E-11 77.4 -2.1 153 10-171 211-374 (419)
51 KOG4579 Leucine-rich repeat (L 97.5 6.3E-06 1.4E-10 68.0 -3.0 105 93-207 31-141 (177)
52 KOG1859 Leucine-rich repeat pr 97.4 5.9E-06 1.3E-10 84.6 -5.7 19 49-67 102-120 (1096)
53 KOG4579 Leucine-rich repeat (L 97.4 9.6E-06 2.1E-10 66.9 -3.7 52 103-155 90-141 (177)
54 KOG1644 U2-associated snRNP A' 97.3 0.00058 1.3E-08 60.2 5.8 59 111-170 86-150 (233)
55 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.7E-09 76.5 2.1 128 10-149 123-262 (699)
56 KOG1644 U2-associated snRNP A' 97.2 0.00059 1.3E-08 60.2 4.8 38 110-147 110-150 (233)
57 KOG3665 ZYG-1-like serine/thre 96.7 0.00048 1E-08 73.1 0.9 82 88-171 171-261 (699)
58 COG5238 RNA1 Ran GTPase-activa 96.2 0.0046 9.9E-08 57.1 3.8 63 10-73 31-109 (388)
59 PF00560 LRR_1: Leucine Rich R 96.2 0.0019 4.1E-08 35.9 0.6 20 10-29 1-20 (22)
60 KOG2739 Leucine-rich acidic nu 95.9 0.0042 9.1E-08 56.9 2.1 112 30-154 41-160 (260)
61 KOG2739 Leucine-rich acidic nu 95.8 0.0064 1.4E-07 55.8 2.7 61 111-171 63-127 (260)
62 PF13306 LRR_5: Leucine rich r 95.4 0.059 1.3E-06 44.2 7.1 37 28-65 8-44 (129)
63 KOG2982 Uncharacterized conser 94.9 0.01 2.2E-07 55.5 1.1 80 92-171 74-157 (418)
64 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.2E-07 32.9 0.5 17 139-155 2-18 (22)
65 PF13306 LRR_5: Leucine rich r 94.3 0.1 2.2E-06 42.7 5.6 53 10-65 13-67 (129)
66 PF13504 LRR_7: Leucine rich r 93.2 0.06 1.3E-06 27.7 1.4 16 138-153 2-17 (17)
67 PF13504 LRR_7: Leucine rich r 93.1 0.048 1E-06 28.1 1.0 16 10-25 2-17 (17)
68 KOG4341 F-box protein containi 92.2 0.047 1E-06 53.4 0.4 85 111-201 344-437 (483)
69 KOG2123 Uncharacterized conser 92.0 0.0066 1.4E-07 56.2 -5.4 54 10-66 20-73 (388)
70 COG5238 RNA1 Ran GTPase-activa 91.3 0.053 1.1E-06 50.3 -0.4 170 10-203 59-255 (388)
71 KOG2123 Uncharacterized conser 91.1 0.012 2.5E-07 54.6 -4.7 59 111-171 39-99 (388)
72 smart00369 LRR_TYP Leucine-ric 88.4 0.36 7.7E-06 27.6 1.8 19 137-155 2-20 (26)
73 smart00370 LRR Leucine-rich re 88.4 0.36 7.7E-06 27.6 1.8 19 137-155 2-20 (26)
74 KOG4341 F-box protein containi 87.1 0.15 3.2E-06 50.1 -0.7 183 10-203 217-414 (483)
75 KOG1947 Leucine rich repeat pr 86.8 0.19 4E-06 51.0 -0.2 62 112-173 242-308 (482)
76 KOG0473 Leucine-rich repeat pr 83.4 0.026 5.5E-07 51.1 -7.2 86 86-173 38-124 (326)
77 KOG0473 Leucine-rich repeat pr 77.2 0.07 1.5E-06 48.4 -6.5 87 108-203 37-124 (326)
78 KOG3864 Uncharacterized conser 76.8 0.38 8.2E-06 42.8 -2.0 61 115-175 103-166 (221)
79 KOG3864 Uncharacterized conser 75.9 0.56 1.2E-05 41.7 -1.2 59 10-68 102-163 (221)
80 smart00364 LRR_BAC Leucine-ric 75.0 1.7 3.7E-05 25.1 1.0 18 137-154 2-19 (26)
81 KOG4308 LRR-containing protein 73.8 0.038 8.3E-07 56.3 -10.4 90 111-203 202-303 (478)
82 KOG4308 LRR-containing protein 69.8 0.03 6.6E-07 57.1 -12.1 80 92-171 207-301 (478)
83 KOG1947 Leucine rich repeat pr 64.3 2 4.4E-05 43.4 -0.3 108 89-201 187-306 (482)
84 smart00367 LRR_CC Leucine-rich 61.9 5.4 0.00012 22.7 1.4 15 56-70 2-16 (26)
85 smart00365 LRR_SD22 Leucine-ri 60.3 6.3 0.00014 22.7 1.4 14 137-150 2-15 (26)
86 PF13516 LRR_6: Leucine Rich r 58.9 1.2 2.6E-05 24.8 -1.8 13 32-44 2-14 (24)
87 smart00368 LRR_RI Leucine rich 45.8 13 0.00028 21.6 1.2 12 138-149 3-14 (28)
88 KOG3763 mRNA export factor TAP 31.7 21 0.00045 36.8 0.9 18 260-277 439-456 (585)
89 KOG3763 mRNA export factor TAP 28.2 30 0.00064 35.7 1.3 34 137-170 218-254 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=4.9e-30 Score=285.41 Aligned_cols=268 Identities=28% Similarity=0.395 Sum_probs=190.1
Q ss_pred CCCCcccC-cccEEEeecC-CCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC----
Q 014835 2 NFPSVTSC-HVYTLELVKV-GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI---- 75 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l---- 75 (417)
.+|++... +|+.|+|+++ .+.++|.+++++++|+.|++++|+.++.+|..+ ++++|+.|++++|..++.+|.+
T Consensus 649 ~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred cCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence 45666656 8888888874 466888888888888888888888888888765 7888888888888777666643
Q ss_pred CccccCCCc--cc----------------------------------ccccc-ceEEcCCCCCCCCCcccccCCCCCcEE
Q 014835 76 PSCNIDGGI--GI----------------------------------ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSL 118 (417)
Q Consensus 76 ~~l~l~g~~--~l----------------------------------~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L 118 (417)
..+.++++. .+ ...++ +.|+|++|..+..+|.+++++++|+.|
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 223333330 00 01134 667777777777788888888888888
Q ss_pred ecccccCCccCCcccCCC---------------------CCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhh
Q 014835 119 EIIDCQYFMILPDELGNL---------------------EALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYL 177 (417)
Q Consensus 119 ~L~~n~~~~~lp~~l~~l---------------------~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l 177 (417)
++++|..++.+|..+ ++ ++|+.|+|++|.+..+|.++..+++|+.|+|++|+.+. .
T Consensus 808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~- 884 (1153)
T PLN03210 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-R- 884 (1153)
T ss_pred ECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC-c-
Confidence 888877666666533 22 35667777777788888888899999999999988776 4
Q ss_pred hcccCCCCccccC-CcceeecCCCc-cc-cCcCc----cc--------ccccc--ccccccCCcccC-------CceeEe
Q 014835 178 QLHLQLPENGLEG-IPEYLRRSPRK-LT-LDPNE----LS--------EIVKD--GWMKQSFDGNIG-------ITKSMY 233 (417)
Q Consensus 178 ~~~l~lp~~l~~l-~L~~L~l~~n~-L~-lp~~~----L~--------~l~~~--~~~~n~~~~~~~-------~~~~~~ 233 (417)
+|..+..+ .|+.|++++|. |+ ++-.. .. .+... .-..||+..... ....+.
T Consensus 885 -----l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~ 959 (1153)
T PLN03210 885 -----VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLI 959 (1153)
T ss_pred -----cCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEE
Confidence 77777778 89999999987 55 22110 00 01000 011455554321 224578
Q ss_pred cCCCCCCCCcccCCCCceEE-EEeCCCCCCCCCcccceEEEEEEecCC
Q 014835 234 FPGKEIPKWFRYQSMGSSVN-LKKRPADFLNNKILVGFAFCIVVAFPA 280 (417)
Q Consensus 234 ~~g~~iP~w~~~~~~g~~~~-i~l~~~~~~~~~~~~gf~~c~v~~~~~ 280 (417)
+||.++|+||.|++.|++++ |.+| +.|.... +.||++|+|+++..
T Consensus 960 l~g~evp~~f~hr~~g~sl~~i~l~-~~~~~~~-~~~f~~c~v~~~~~ 1005 (1153)
T PLN03210 960 LSGEEVPSYFTHRTTGASLTNIPLL-HISPCQP-FFRFRACAVVDSES 1005 (1153)
T ss_pred CCCccCchhccCCcccceeeeeccC-CcccCCC-ccceEEEEEEecCc
Confidence 99999999999999999998 9998 8888776 89999999997654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=7.5e-19 Score=194.42 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=111.5
Q ss_pred cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------CCCccccC
Q 014835 10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-------EIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------~l~~l~l~ 81 (417)
+|++|+|++|+++ .+|. +.+++|++|+|++|.+.+.+|..++++++|++|+|++|...+.+| .+..|+++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 7777777777665 4443 446666666666666666666666666666666666655443333 22223333
Q ss_pred CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCc
Q 014835 82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REV 152 (417)
Q Consensus 82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~l 152 (417)
++ ..++.+++ +.|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|+.|++++|.+ +.+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 22 34555666 6666666666666666666666666666666666666666666666666666666666 355
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
|..+..+++|+.|+|++|. +.+. +|..+..+ .|+.|++++|.+.
T Consensus 277 p~~l~~l~~L~~L~Ls~n~-l~~~------~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNS-LSGE------IPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred chhHhhccCcCEEECcCCe-eccC------CChhHcCCCCCcEEECCCCccC
Confidence 6666666666666666665 3333 55555555 6666666666654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=6.7e-19 Score=194.82 Aligned_cols=187 Identities=23% Similarity=0.250 Sum_probs=151.4
Q ss_pred cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------CCCccccC
Q 014835 10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-------EIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------~l~~l~l~ 81 (417)
+|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..++++++|++|+|++|...+.+| .+..++++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 7888888888886 678778888888888888888888888888888888888888876544443 34445555
Q ss_pred CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCc
Q 014835 82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REV 152 (417)
Q Consensus 82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~l 152 (417)
++ ..+..+++ +.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|+.|++++|.+ +.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 44 45678888 9999999988888898899999999999999988888888888899999999999888 577
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
|..+..+++|+.|++++|. +.+. +|..+..+ .|+.|++++|.++
T Consensus 301 p~~~~~l~~L~~L~l~~n~-~~~~------~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNN-FTGK------IPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ChhHcCCCCCcEEECCCCc-cCCc------CChhHhcCCCCCEEECcCCCCc
Confidence 8888888999999998888 4445 67777777 8888888888876
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-20 Score=158.70 Aligned_cols=163 Identities=24% Similarity=0.358 Sum_probs=136.5
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.++.. +++.|.|++|.++.+|+.|..|.+|+.|++++| .++.+|.+++.+++|+.|+++-|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-------------- 89 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-------------- 89 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh--------------
Confidence 46677777 899999999999999999999999999999985 56778988999999999999874
Q ss_pred CCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 81 DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
.+..+|..|+.++.|+.|||..|++.+ .+|..|..|+.|+.|+|++|.+.-+|..++++
T Consensus 90 --------------------rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l 149 (264)
T KOG0617|consen 90 --------------------RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL 149 (264)
T ss_pred --------------------hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence 344567778888888888888887654 57878888888888888888888888888888
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
++|+.|.+..|..++ +|..+..+ .|+.|.+.+|+|+ +|+.
T Consensus 150 t~lqil~lrdndll~--------lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 150 TNLQILSLRDNDLLS--------LPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cceeEEeeccCchhh--------CcHHHHHHHHHHHHhcccceeeecChh
Confidence 888888888888665 88888888 8888888888888 7775
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=2.3e-19 Score=177.05 Aligned_cols=186 Identities=23% Similarity=0.315 Sum_probs=121.2
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccc-----------------------cCccccccCCCCCCCcEEeeecC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCS-----------------------MLESISSSIFKLKSLQSIEISNC 66 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~-----------------------~~~~lp~~l~~L~~L~~L~Ls~c 66 (417)
.|+.||||+|+++++|..+...+++-+|+||+|+ .+..+|+.+..|.+|++|+|++|
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 5555555555555555555555555555555432 34456666667777777777776
Q ss_pred CC----CCcCCCCC---ccccCCC--------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC
Q 014835 67 PI----FERFTEIP---SCNIDGG--------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP 130 (417)
Q Consensus 67 ~~----l~~lp~l~---~l~l~g~--------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp 130 (417)
+. +..+|.+. .|+++++ .++..+.+ ..++++.| .+..+|+.+.++.+|+.|+|++|.+.. +.
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~ite-L~ 261 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITE-LN 261 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceee-ee
Confidence 53 44555543 3677776 56777888 88999987 567789999999999999999998543 33
Q ss_pred cccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 131 DELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 131 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
...+...+|++|+++.|+++.+|+.+.+|+.|+.|.+.+|+.--+- ||+.|+.+ .|+.+..++|.|.
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG------iPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG------IPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC------CccchhhhhhhHHHHhhccccc
Confidence 3445566777777777777777777777777777777776622112 55555555 5555555555554
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=3.1e-16 Score=175.31 Aligned_cols=137 Identities=23% Similarity=0.402 Sum_probs=100.7
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|..+.. +|+.|+|+++.+..+|.++..+++|++|+|++|..++.+|. ++.+++|++|+|++|..+..+|
T Consensus 603 ~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp------- 674 (1153)
T PLN03210 603 CMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP------- 674 (1153)
T ss_pred CCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-------
Confidence 45665555 88888888888888888888888888888888877788875 7788888888888888887777
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP 153 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 153 (417)
..+..+++ +.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.+..+|
T Consensus 675 ---~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 675 ---SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP 741 (1153)
T ss_pred ---hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence 46777777 888888887777777765 6777888888777666555543 234455555555544444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-17 Score=162.88 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=126.6
Q ss_pred cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835 10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~ 81 (417)
++++|+|++|.|+.+-.. |..|.+|.+|.|+.|.+...-+..|.+|++|+.|+|..|.. ...+|.+..+.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 788888888888866653 77788888888888666555556677788888888888642 2234444445554
Q ss_pred CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc
Q 014835 82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP 153 (417)
Q Consensus 82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 153 (417)
.+ ..+..+.+ ++|+|+.|++...-..++.+|++|+.|+|+.|.+...-++.....++|++|+|+.|+|++++
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 44 56777888 99999999887777778899999999999999988888888888999999999999998887
Q ss_pred h-hccCCCCCcEEEccCCC
Q 014835 154 E-SLGQLSSLKILVLSNIK 171 (417)
Q Consensus 154 ~-~l~~L~~L~~L~L~~n~ 171 (417)
+ ++..|+.|+.|+|+.|.
T Consensus 334 ~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred hhHHHHHHHhhhhcccccc
Confidence 4 67777777777777776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=6.1e-18 Score=167.13 Aligned_cols=184 Identities=21% Similarity=0.235 Sum_probs=122.3
Q ss_pred cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835 10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE 87 (417)
Q Consensus 10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~ 87 (417)
.|+.+.+..|+++ .||+.|..|..|..|+||.| .+..+|..+..-+++-+|+||+ +.+..+|. .-+.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn---------~lfi 147 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPN---------SLFI 147 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCc---------hHHH
Confidence 7899999999997 79999999999999999995 5677899899999999999999 56777775 3333
Q ss_pred cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCC-------------------------ccCCcccCCCCCCCE
Q 014835 88 RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYF-------------------------MILPDELGNLEALET 141 (417)
Q Consensus 88 ~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~-------------------------~~lp~~l~~l~~L~~ 141 (417)
+|+. ..|+|++| .+..+|..+..+..|++|.|++|++. ..+|.++..+.+|..
T Consensus 148 nLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 4444 44555544 23344444444444444444444321 234555666666777
Q ss_pred EEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhh-----------------cccCCCCccccC-CcceeecCCCccc
Q 014835 142 LIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQ-----------------LHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 142 L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~-----------------~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
++++.|.+..+|+.+.++.+|+.|+|++|+ ++ .+. ....+|+.+..+ .|+.|.+.+|+|+
T Consensus 227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~-it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 227 VDLSENNLPIVPECLYKLRNLRRLNLSGNK-IT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccccccCCCcchHHHhhhhhhheeccCcCc-ee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence 777777777777777777777777777766 33 100 001266666666 6777777777666
Q ss_pred ---cCcC
Q 014835 204 ---LDPN 207 (417)
Q Consensus 204 ---lp~~ 207 (417)
||+.
T Consensus 305 FeGiPSG 311 (1255)
T KOG0444|consen 305 FEGIPSG 311 (1255)
T ss_pred ccCCccc
Confidence 5654
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.9e-17 Score=137.94 Aligned_cols=143 Identities=24% Similarity=0.405 Sum_probs=120.5
Q ss_pred cccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCc
Q 014835 6 VTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~ 84 (417)
+... +|+.|++++|+|+++|.+++.+++|+.|++.-| .+..+|..|+.++.|+.|||++|+.
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl---------------- 114 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNL---------------- 114 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcccccc----------------
Confidence 4444 999999999999999999999999999999884 5667899999999999999999632
Q ss_pred cccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcE
Q 014835 85 GIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKI 164 (417)
Q Consensus 85 ~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~ 164 (417)
....+|..|..++.|+.|+|++|. .+.+|..++++++|+.|.+..|.+-++|..++.++.|+.
T Consensus 115 ----------------~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 115 ----------------NENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred ----------------ccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 223567778888888888898887 567788889999999999999999889999999999999
Q ss_pred EEccCCCCChhhhhcccCCCCccccC
Q 014835 165 LVLSNIKRLPEYLQLHLQLPENGLEG 190 (417)
Q Consensus 165 L~L~~n~~l~~~l~~~l~lp~~l~~l 190 (417)
|.+.+|+ ++ . +|..+..+
T Consensus 178 lhiqgnr-l~-v------lppel~~l 195 (264)
T KOG0617|consen 178 LHIQGNR-LT-V------LPPELANL 195 (264)
T ss_pred Hhcccce-ee-e------cChhhhhh
Confidence 9999988 55 3 67666554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=1.4e-15 Score=149.78 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=85.2
Q ss_pred CCCcccC--cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835 3 FPSVTSC--HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~ 79 (417)
+|.+.+. ||+.|+|.+|.|+++... +..++.|+.|||+.|.+...--.++..-.++++|+|++|. ++.+..
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~----- 190 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLET----- 190 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cccccc-----
Confidence 4444444 445555554444444332 4444444444444432222111223333344444444421 111110
Q ss_pred cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc------------------------cCCcccC
Q 014835 80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM------------------------ILPDELG 134 (417)
Q Consensus 80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~------------------------~lp~~l~ 134 (417)
..+..+.+ ..|.|+.|++.+.-+..|.+|++|+.|+|..|.+.. --...|.
T Consensus 191 ----~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 191 ----GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ----ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 44555555 556666555444333444445555555555554321 1112233
Q ss_pred CCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 135 NLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 135 ~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
.|.++++|+|..|++..+- .++..|+.|+.|+|++|. +... -++..... +|+.|+|++|.|+ +|+.
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~ri------h~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRI------HIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhh-hhee------ecchhhhcccceeEeccccccccCChh
Confidence 4445555555555554433 245555666666666655 3312 12223333 6666666666665 5554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1.9e-16 Score=149.65 Aligned_cols=192 Identities=23% Similarity=0.281 Sum_probs=121.8
Q ss_pred CCCcccC--cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-C----
Q 014835 3 FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-I---- 75 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-l---- 75 (417)
+|+.++. .++.|+.++|++.++|..++.+..|+.|+.+.|. ...+|++++.+..|+.|+..+| .+..+|. +
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLS 160 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHH
Confidence 4554444 7777888888888888888888888888887754 3445666777777777777764 3334442 1
Q ss_pred --CccccCCC------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec
Q 014835 76 --PSCNIDGG------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR 146 (417)
Q Consensus 76 --~~l~l~g~------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 146 (417)
..+.+.|+ ...-+++. +.|+...| .++.+|..++.+.+|..|++..|++ ..+| .|+.+..|.+|+++.
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcc
Confidence 11233333 22333666 77777766 5677787788888888888877763 3445 456666666666666
Q ss_pred cCCCCcchhcc-CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 147 TAMREVPESLG-QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 147 n~l~~lp~~l~-~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
|.|..+|..+. ++.+|..|||..|+ ++ . +|+.+..+ +|+.||+++|.++ +|.+
T Consensus 238 N~i~~lpae~~~~L~~l~vLDLRdNk-lk-e------~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 238 NQIEMLPAEHLKHLNSLLVLDLRDNK-LK-E------VPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred cHHHhhHHHHhcccccceeeeccccc-cc-c------CchHHHHhhhhhhhcccCCccccCCcc
Confidence 66666665443 56666666666666 44 3 66666666 6666666666666 5554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=4.2e-16 Score=147.30 Aligned_cols=171 Identities=24% Similarity=0.286 Sum_probs=125.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.++.|+..+|+++.+|.+++++.+|..|++.+|+... +|+..-+++.|++||... +.++.+| +.++.+
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~-N~L~tlP----------~~lg~l 205 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNS-NLLETLP----------PELGGL 205 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccch-hhhhcCC----------hhhcch
Confidence 4444444444444444444444455555554433322 222222355555555554 4555666 688999
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcchhccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVPESLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L 167 (417)
.+ ..|+|..|++ ..+| .|..+..|.+|+++.|. ...+|... .++++|..|||..|+++++|+.+..+++|.+||+
T Consensus 206 ~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 206 ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence 99 9999999954 5677 78899999999999987 55666655 4899999999999999999999999999999999
Q ss_pred cCCCCChhhhhcccCCCCccccCCcceeecCCCccc
Q 014835 168 SNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT 203 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~ 203 (417)
++|. ++ . +|..++.++|+.|-+.+|++.
T Consensus 283 SNN~-is-~------Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 283 SNND-IS-S------LPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred cCCc-cc-c------CCcccccceeeehhhcCCchH
Confidence 9999 55 4 899998889999999999976
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=2.7e-12 Score=135.50 Aligned_cols=58 Identities=29% Similarity=0.268 Sum_probs=36.0
Q ss_pred CCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCcC
Q 014835 137 EALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 137 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~~ 207 (417)
.+|+.|++++|.+..+|.. .++|+.|++++|. ++ . +|... ..|+.|++++|.|+ +|..
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-Ls-s------IP~l~--~~L~~L~Ls~NqLt~LP~s 440 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LT-S------LPMLP--SGLLSLSVYRNQLTRLPES 440 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccCCc-CC-C------CCcch--hhhhhhhhccCcccccChH
Confidence 3577777777777767653 3567777887777 44 2 45311 15566677777766 6553
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=5.3e-14 Score=133.00 Aligned_cols=202 Identities=16% Similarity=0.203 Sum_probs=141.6
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCC----
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIP---- 76 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~---- 76 (417)
++|.-.......|+|..|+|+.||+. |+.+++|+.|+|+.|++...-|.+|.+|++|..|-+.+++.++.+|.-.
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45555445778999999999999996 8999999999999999988899999999999999999988998888511
Q ss_pred ----ccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCc----------------
Q 014835 77 ----SCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFM---------------- 127 (417)
Q Consensus 77 ----~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~---------------- 127 (417)
.|.+..+ ..+..+++ ..|.+.+|.+ ..++. .+..+..++.+.+..|.+..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 0111111 44555666 6666666633 33333 55566666666665554211
Q ss_pred ---------------------------------------------cCC-cccCCCCCCCEEEeeccCCCCcc-hhccCCC
Q 014835 128 ---------------------------------------------ILP-DELGNLEALETLIVDRTAMREVP-ESLGQLS 160 (417)
Q Consensus 128 ---------------------------------------------~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~ 160 (417)
..| ..|..+++|+.|+|++|+++.+. .++..+.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 001 13567888889999999887664 5788888
Q ss_pred CCcEEEccCCCCChhhhhcccCCCCcc-ccC-CcceeecCCCccc-cCcCccccc
Q 014835 161 SLKILVLSNIKRLPEYLQLHLQLPENG-LEG-IPEYLRRSPRKLT-LDPNELSEI 212 (417)
Q Consensus 161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l-~~l-~L~~L~l~~n~L~-lp~~~L~~l 212 (417)
.++.|.|..|+ +. . +...+ ..+ .|+.|+|.+|+|+ +-+-.++.+
T Consensus 299 ~l~eL~L~~N~-l~-~------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 299 ELQELYLTRNK-LE-F------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred hhhhhhcCcch-HH-H------HHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 88888888888 54 2 33333 344 8999999999988 444434333
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=5e-12 Score=133.93 Aligned_cols=183 Identities=27% Similarity=0.350 Sum_probs=94.5
Q ss_pred CCCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-----CC
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-----IP 76 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-----l~ 76 (417)
++|..+..+|+.|+|++|.|+.+|..+. .+|++|++++|++ ..+|..+. .+|+.|+|++|+ +..+|. +.
T Consensus 192 sLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~s~L~ 265 (754)
T PRK15370 192 TIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINR-ITELPERLPSALQ 265 (754)
T ss_pred cCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCc-cCcCChhHhCCCC
Confidence 3454333367777777777777776553 4777777777653 35665442 367777777753 344542 22
Q ss_pred ccccCCC--cccc-cc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC
Q 014835 77 SCNIDGG--IGIE-RL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE 151 (417)
Q Consensus 77 ~l~l~g~--~~l~-~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~ 151 (417)
.|+++++ ..+. .+ ++ +.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.++.
T Consensus 266 ~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 266 SLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred EEECcCCccCccccccCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc
Confidence 2233222 0000 01 12 44444444322 2332221 23444444444432 233222 2456666666666666
Q ss_pred cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCcC
Q 014835 152 VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 152 lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~~ 207 (417)
+|..+. ++|+.|+|++|+ +. . +|..+. -.|+.|++++|.|+ +|+.
T Consensus 340 LP~~l~--~sL~~L~Ls~N~-L~-~------LP~~lp-~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQ-IT-V------LPETLP-PTITTLDVSRNALTNLPEN 385 (754)
T ss_pred CChhhc--CcccEEECCCCC-CC-c------CChhhc-CCcCEEECCCCcCCCCCHh
Confidence 665442 567777777776 33 2 454331 16677777777766 5554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=2.7e-12 Score=136.00 Aligned_cols=181 Identities=20% Similarity=0.275 Sum_probs=121.9
Q ss_pred CCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-----CCc
Q 014835 3 FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-----IPS 77 (417)
Q Consensus 3 lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-----l~~ 77 (417)
+|.....+|+.|+|++|.|+.+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++| .+..+|. +..
T Consensus 214 LP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~~sL~~ 287 (754)
T PRK15370 214 LPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLPEELRY 287 (754)
T ss_pred CChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccCCCCcE
Confidence 454333378888888888888887553 46788888876544 5666553 46777777764 4445543 334
Q ss_pred cccCCC--cccc-cc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc
Q 014835 78 CNIDGG--IGIE-RL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV 152 (417)
Q Consensus 78 l~l~g~--~~l~-~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l 152 (417)
|.++++ ..+. .+ ++ +.|++++|.+. .+|..+ .++|+.|++++|.+.+ +|..+. ++|+.|++++|.+..+
T Consensus 288 L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 288 LSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL 361 (754)
T ss_pred EECCCCccccCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC
Confidence 555554 1111 12 24 77888888654 466544 3689999999988654 676553 6899999999999888
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCc
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~ 206 (417)
|..+ .++|+.|+|++|. ++ . +|..+.. .|+.|++++|+|+ +|.
T Consensus 362 P~~l--p~~L~~LdLs~N~-Lt-~------LP~~l~~-sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 362 PETL--PPTITTLDVSRNA-LT-N------LPENLPA-ALQIMQASRNNLVRLPE 405 (754)
T ss_pred Chhh--cCCcCEEECCCCc-CC-C------CCHhHHH-HHHHHhhccCCcccCch
Confidence 8765 3689999999988 54 3 6654322 6888888888887 665
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=8e-14 Score=143.90 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=100.1
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccC----------------------ccccccCCCCCCCcEEeeecCC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSML----------------------ESISSSIFKLKSLQSIEISNCP 67 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~----------------------~~lp~~l~~L~~L~~L~Ls~c~ 67 (417)
+|++++++.|+++.+|.+++.+.+|+.|++..|.+. .-+|.....+++|++|+|.. +
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-N 320 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-c
Confidence 777888888888888877777778887777775442 23455566688889999888 4
Q ss_pred CCCcCCCCCc---------cccCCC-----ccc--ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC
Q 014835 68 IFERFTEIPS---------CNIDGG-----IGI--ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP 130 (417)
Q Consensus 68 ~l~~lp~l~~---------l~l~g~-----~~l--~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp 130 (417)
.+..+|+... ++.+.+ ... ..++. +.|++.+|.+....-..+.++++|+.|+|++|. +..+|
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCC
Confidence 5555554210 111100 111 11222 445555555444433344455555555555555 23333
Q ss_pred c-ccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 131 D-ELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 131 ~-~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
+ .+.++..|++|+||+|.++.+|..+..+..|++|...+|..+. .| .+..+ .|+.+|++.|.|+
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--------fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--------FP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--------ch-hhhhcCcceEEecccchhh
Confidence 3 2445555555555555555555555555555555555554222 44 44444 5555555555544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=6.5e-11 Score=125.10 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=23.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC 66 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c 66 (417)
+|+.|++.+|+|+.+|.. +++|++|+|++|++. .+|.. .++|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 455555555555555531 345555555554322 34431 234555555553
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1.9e-13 Score=134.55 Aligned_cols=174 Identities=24% Similarity=0.339 Sum_probs=136.6
Q ss_pred ccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccc
Q 014835 11 VYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLA 90 (417)
Q Consensus 11 L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~ 90 (417)
-...||+.|++.++|..+..+..|+.|.|..| -+..+|..+.+|..|.+|+|+. +.+..+| ..+..++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp----------~~lC~lp 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLP----------DGLCDLP 144 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCC----------hhhhcCc
Confidence 35678888888888888888888888888874 4567787788888888888888 4555566 4555666
Q ss_pred cceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCC
Q 014835 91 SCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNI 170 (417)
Q Consensus 91 ~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n 170 (417)
-+.|-+++| .++.+|..++.+..|..|+.+.|. ...+|..++.+.+|+.|.+..|++..+|..+..| .|..||++.|
T Consensus 145 Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 145 LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC
Confidence 666667666 567788888888888888888887 4567777888888888888888888888888855 4888899888
Q ss_pred CCChhhhhcccCCCCccccC-CcceeecCCCccccCcC
Q 014835 171 KRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLTLDPN 207 (417)
Q Consensus 171 ~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~lp~~ 207 (417)
+... ||..+.++ .|++|-|.+|+|+-|+.
T Consensus 222 kis~--------iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 222 KISY--------LPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ceee--------cchhhhhhhhheeeeeccCCCCCChH
Confidence 8443 88888888 89999999888886665
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=6.8e-13 Score=137.17 Aligned_cols=184 Identities=21% Similarity=0.162 Sum_probs=134.5
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-------CCc-----
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-------IPS----- 77 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-------l~~----- 77 (417)
+|+.|+.++|.++++-. -..-.+|++++++.|+ ...+|.+++.+.+|+.|++..|. +..+|. +..
T Consensus 220 ~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence 66777777777663222 1234589999999954 55688999999999999999954 344442 111
Q ss_pred cccCCC-cccccccc-ceEEcCCCCCCCCCcccc--------------------------cCCCCCcEEecccccCCccC
Q 014835 78 CNIDGG-IGIERLAS-CRLVLEDCSSLQSLPSSL--------------------------CMFKSLTSLEIIDCQYFMIL 129 (417)
Q Consensus 78 l~l~g~-~~l~~l~~-~~L~L~~n~~l~~lp~~l--------------------------~~l~~L~~L~L~~n~~~~~l 129 (417)
+.++.. .....++. ++|+|..|.+ ..+|..+ ..++.|+.|.+.+|.+....
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 122222 34455777 8888888754 3333221 01345778888888887777
Q ss_pred CcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835 130 PDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD 205 (417)
Q Consensus 130 p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp 205 (417)
-+.+.++.+|+.|+|++|++..+|+ .+.++..|+.|+|++|+ ++ . +|..+..+ .|++|....|.|. +|
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~-~------Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LT-T------LPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hh-h------hhHHHHhhhhhHHHhhcCCceeech
Confidence 6778899999999999999999996 67889999999999999 65 4 89888888 9999999999977 66
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.4e-12 Score=126.99 Aligned_cols=175 Identities=25% Similarity=0.325 Sum_probs=144.8
Q ss_pred CCCcccC--cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 3 FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
+|.-... .|+.|.|..|.+..+|..+++|..|++|+|+.|. +..+|..++.|+ |+.|.+++ ++++.+|
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp------- 159 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLP------- 159 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCC-------
Confidence 4544444 7889999999999999999999999999999965 556888888887 99999998 7888888
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
..++.+.. ..|+.+.|. +..+|..++.+.+|+.|.+..|. ...+|+.+..+ .|..||++.|++..||-.|.+|
T Consensus 160 ---~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m 233 (722)
T KOG0532|consen 160 ---EEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKM 233 (722)
T ss_pred ---cccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCceeecchhhhhh
Confidence 57777777 889999884 56788999999999999999998 55677777744 5899999999999999999999
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCcccc---C-CcceeecCCCc
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENGLE---G-IPEYLRRSPRK 201 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~---l-~L~~L~l~~n~ 201 (417)
+.|++|-|.+|+ ++ . -|..+.. . ..++|+..-|+
T Consensus 234 ~~Lq~l~LenNP-Lq-S------PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 234 RHLQVLQLENNP-LQ-S------PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhheeeeeccCC-CC-C------ChHHHHhccceeeeeeecchhcc
Confidence 999999999999 66 2 3444322 2 67888888773
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=2e-11 Score=117.87 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=114.6
Q ss_pred cccEEEeecCCCc-----ccCccccCCcCcceeeccccccC------ccccccCCCCCCCcEEeeecCCCCC-------c
Q 014835 10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSML------ESISSSIFKLKSLQSIEISNCPIFE-------R 71 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~------~~lp~~l~~L~~L~~L~Ls~c~~l~-------~ 71 (417)
+|++|+++++.++ .++..+...+.|+.|+++++... ..++..+..+++|+.|++++|..-. .
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 4666666666653 34444555555666666654433 1223334455566666666654321 1
Q ss_pred C---CCCCccccCCC-----------cccccc-cc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCc----
Q 014835 72 F---TEIPSCNIDGG-----------IGIERL-AS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFM---- 127 (417)
Q Consensus 72 l---p~l~~l~l~g~-----------~~l~~l-~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~---- 127 (417)
+ +.+..++++++ ..+..+ ++ +.|++++|.+.+ .++..+..+++|++|++++|.+.+
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 1 11444444433 234555 67 889999998763 244456677889999999988764
Q ss_pred cCCcccCCCCCCCEEEeeccCCC-----CcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc-cC-CcceeecCCC
Q 014835 128 ILPDELGNLEALETLIVDRTAMR-----EVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL-EG-IPEYLRRSPR 200 (417)
Q Consensus 128 ~lp~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~-~l-~L~~L~l~~n 200 (417)
.++..+..+++|+.|++++|.++ .++..+..+++|++|++++|. +.+... ..+...+. .. .|+.|++++|
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~--~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA--AALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH--HHHHHHHhccCCCceEEEccCC
Confidence 23444556678999999999884 234456778889999999987 443100 00111121 23 8888999988
Q ss_pred ccc
Q 014835 201 KLT 203 (417)
Q Consensus 201 ~L~ 203 (417)
.++
T Consensus 261 ~i~ 263 (319)
T cd00116 261 DIT 263 (319)
T ss_pred CCC
Confidence 874
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1.6e-11 Score=118.47 Aligned_cols=191 Identities=17% Similarity=0.101 Sum_probs=103.0
Q ss_pred cccEEEeecCCCcc-------cCccccCCcCcceeeccccccCccccccCCCCCC---CcEEeeecCCCC----------
Q 014835 10 HVYTLELVKVGIKE-------LPSSIECLSNLKKLYIVDCSMLESISSSIFKLKS---LQSIEISNCPIF---------- 69 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~-------lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~---L~~L~Ls~c~~l---------- 69 (417)
+++.|+++++.+.. ++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 46777776665542 2334556667777777776665444444433333 777777776432
Q ss_pred -CcC-CCCCccccCCC-----------cccccccc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCcc---
Q 014835 70 -ERF-TEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFMI--- 128 (417)
Q Consensus 70 -~~l-p~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~~--- 128 (417)
... +.+..++++++ ..+..+++ +.|++++|.+.+ .++..+..+++|++|++++|.+.+.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 122 44455555554 12334456 677777776553 2333444556777777777765422
Q ss_pred -CCcccCCCCCCCEEEeeccCCCCc-chhcc-----CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCC
Q 014835 129 -LPDELGNLEALETLIVDRTAMREV-PESLG-----QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPR 200 (417)
Q Consensus 129 -lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~-----~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n 200 (417)
++..+..+++|+.|++++|.++.. ...+. ..+.|++|++++|. +++.. ...+...+... .|+.+++++|
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~--~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDG--AKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHH--HHHHHHHHhcCCCccEEECCCC
Confidence 333455566777777777766431 11111 23567777777776 32110 00022334444 6777777777
Q ss_pred ccc
Q 014835 201 KLT 203 (417)
Q Consensus 201 ~L~ 203 (417)
.++
T Consensus 289 ~l~ 291 (319)
T cd00116 289 KFG 291 (319)
T ss_pred CCc
Confidence 655
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=6e-12 Score=119.25 Aligned_cols=194 Identities=17% Similarity=0.176 Sum_probs=134.4
Q ss_pred CCCC--cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccc-cCCCCCCCcEEeeecCCC-------C
Q 014835 2 NFPS--VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISS-SIFKLKSLQSIEISNCPI-------F 69 (417)
Q Consensus 2 ~lP~--~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~L~~L~~L~Ls~c~~-------l 69 (417)
.+|+ |... +|++|||++|+|+.|-+ .|..|..|..|-+.+++.++.+|. .|++|.+|+.|.+.-|.. +
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 4665 2233 99999999999997754 699999999998888677777774 467777777777765431 1
Q ss_pred CcCCCCCccccCCC-------cccccccc-ceEEcCC-------------------------------------------
Q 014835 70 ERFTEIPSCNIDGG-------IGIERLAS-CRLVLED------------------------------------------- 98 (417)
Q Consensus 70 ~~lp~l~~l~l~g~-------~~l~~l~~-~~L~L~~------------------------------------------- 98 (417)
..+|.+..|.+-.+ .++..+.. +.+.+..
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 22232222221111 11222222 2222111
Q ss_pred ------------------CCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835 99 ------------------CSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ 158 (417)
Q Consensus 99 ------------------n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 158 (417)
|......| ..|..+++|+.|+|++|++...-+.+|.....+++|.|..|++..+.. .+..
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ 320 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQG 320 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhc
Confidence 11222223 247789999999999999999999999999999999999999976654 6788
Q ss_pred CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCcc
Q 014835 159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKL 202 (417)
Q Consensus 159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L 202 (417)
++.|+.|+|.+|+ ++-. .|-.+..+ .|.+|++-.|++
T Consensus 321 ls~L~tL~L~~N~-it~~------~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQ-ITTV------APGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccceeeeecCCe-eEEE------ecccccccceeeeeehccCcc
Confidence 9999999999999 5534 56566677 999998888774
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.3e-10 Score=100.08 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=21.9
Q ss_pred CCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCCCcch----hccCCCCCcEEEc
Q 014835 111 MFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMREVPE----SLGQLSSLKILVL 167 (417)
Q Consensus 111 ~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L 167 (417)
.+++|++|++++|++... --..+..+++|+.|++.+|.+...+. .+..+++|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 456666666666654321 11234556666666666666643332 3455666666654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.1e-10 Score=112.33 Aligned_cols=171 Identities=26% Similarity=0.367 Sum_probs=133.7
Q ss_pred cccEEEeecCCCcccCccccCCc-CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLS-NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
.++.|++.+|.++++|.....+. +|+.|++++|. +..+|..+..+++|+.|++++| .+..+| .....
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~----------~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLP----------KLLSN 184 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhh----------hhhhh
Confidence 68889999999999998887775 99999999854 5566666888999999999984 455554 22335
Q ss_pred ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEc
Q 014835 89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVL 167 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L 167 (417)
++. ..|++++|+ +..+|..+..+..|++|.+++|. ....+..+.++.++..|.+.+|++..++..++.+++|+.|++
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence 666 788888884 55677766667779999999886 334555678888888888899988887888899999999999
Q ss_pred cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
++|. +. . ++. +... .++.|+++++.+.
T Consensus 263 s~n~-i~-~------i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 263 SNNQ-IS-S------ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccc-cc-c------ccc-ccccCccCEEeccCcccc
Confidence 9998 44 2 554 6677 9999999999866
No 27
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=3.8e-09 Score=111.16 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=85.0
Q ss_pred CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcccccCC
Q 014835 33 NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMF 112 (417)
Q Consensus 33 ~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l 112 (417)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|. +.+.+|..++.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~---------------------------------l~g~iP~~~~~l 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS---------------------------------IRGNIPPSLGSI 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc---------------------------------ccCcCChHHhCC
Confidence 47889999998888999889999999999998863 345566677788
Q ss_pred CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcchhccCC-CCCcEEEccCCC
Q 014835 113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVPESLGQL-SSLKILVLSNIK 171 (417)
Q Consensus 113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l~~L-~~L~~L~L~~n~ 171 (417)
++|+.|+|++|++.+.+|..++++++|+.|+|++|.+ +.+|..++.+ .++..+++.+|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 8888888888888888888888888888888888887 5788777653 466778888877
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=5.1e-09 Score=110.16 Aligned_cols=103 Identities=24% Similarity=0.312 Sum_probs=60.8
Q ss_pred ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcchhccCCCCCcEEEccCC
Q 014835 92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVPESLGQLSSLKILVLSNI 170 (417)
Q Consensus 92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l~~L~~L~~L~L~~n 170 (417)
..|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+ +.+|..++.+++|+.|+|++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 4556666666666666666666666666666666666666666666666666666666 356666666666666666666
Q ss_pred CCChhhhhcccCCCCccccC--CcceeecCCCc
Q 014835 171 KRLPEYLQLHLQLPENGLEG--IPEYLRRSPRK 201 (417)
Q Consensus 171 ~~l~~~l~~~l~lp~~l~~l--~L~~L~l~~n~ 201 (417)
. +.+. +|..+... .+..+++.+|.
T Consensus 501 ~-l~g~------iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 501 S-LSGR------VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred c-cccc------CChHHhhccccCceEEecCCc
Confidence 5 4444 55554432 34444444443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=2.7e-09 Score=106.47 Aligned_cols=157 Identities=29% Similarity=0.417 Sum_probs=127.7
Q ss_pred CCCCcccC---cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835 2 NFPSVTSC---HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSC 78 (417)
Q Consensus 2 ~lP~~~~~---~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l 78 (417)
++|...+. +|+.|++++|.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+.|++++ +.+..+|.
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~---- 203 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPP---- 203 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC-CccccCch----
Confidence 45665554 5999999999999998889999999999999965 455676566899999999999 56777763
Q ss_pred ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhcc
Q 014835 79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLG 157 (417)
Q Consensus 79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 157 (417)
.+..+.. +.|.+++|. ....+..+..+.++..|.+.+|++ ..++..++.+++|+.|++++|.+..++. ++
T Consensus 204 ------~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~ 274 (394)
T COG4886 204 ------EIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-LG 274 (394)
T ss_pred ------hhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eeccchhccccccceecccccccccccc-cc
Confidence 3345555 788888885 345566778899999999888773 3447788999999999999999999987 99
Q ss_pred CCCCCcEEEccCCCCC
Q 014835 158 QLSSLKILVLSNIKRL 173 (417)
Q Consensus 158 ~L~~L~~L~L~~n~~l 173 (417)
.+.+|+.|++++|...
T Consensus 275 ~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 275 SLTNLRELDLSGNSLS 290 (394)
T ss_pred ccCccCEEeccCcccc
Confidence 9999999999999843
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=5.1e-10 Score=102.90 Aligned_cols=124 Identities=18% Similarity=0.278 Sum_probs=82.3
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.|++|||++|.|+.+..++.-+++++.|+++.|.+.. +.. +..|++|+.||||+| .+..+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~n-La~L~~L~~LDLS~N-~Ls~~----------------- 344 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQN-LAELPQLQLLDLSGN-LLAEC----------------- 344 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceee-ehh-hhhcccceEeecccc-hhHhh-----------------
Confidence 5788888888888888888888888888888866544 333 677888888888884 22222
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEc
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L 167 (417)
-.+-..+-+.+.|.|++|.+. .+ ..++++-+|..|++++|+|..+. ..|++|+-|++|.|
T Consensus 345 ----------------~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 345 ----------------VGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred ----------------hhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 122224556666666666422 11 23556666777777777775443 35677777777777
Q ss_pred cCCC
Q 014835 168 SNIK 171 (417)
Q Consensus 168 ~~n~ 171 (417)
.+|+
T Consensus 407 ~~NP 410 (490)
T KOG1259|consen 407 TGNP 410 (490)
T ss_pred cCCC
Confidence 7777
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.1e-09 Score=101.50 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=72.5
Q ss_pred cccEEEeecCCCcccCc--cccCCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835 10 HVYTLELVKVGIKELPS--SIECLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~ 85 (417)
.|+.+.|.+..+...+. ....|++++.|||+.|-+..- +-.-...|++|+.|+|+.|....-... ..
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---------~~ 192 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---------NT 192 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---------cc
Confidence 56666666666654442 356677777777777433221 112234577777777776432211110 01
Q ss_pred cccccc-ceEEcCCCCCCCC-CcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCC
Q 014835 86 IERLAS-CRLVLEDCSSLQS-LPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSS 161 (417)
Q Consensus 86 l~~l~~-~~L~L~~n~~l~~-lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~ 161 (417)
-..++. +.|.|++|.+... +-..+..+++|+.|+|.+|............+..|++|+|++|++-..+ ..++.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 112333 4555555544321 1112224455555555555322222222233445555555555553333 23445555
Q ss_pred CcEEEccCCC
Q 014835 162 LKILVLSNIK 171 (417)
Q Consensus 162 L~~L~L~~n~ 171 (417)
|+.|+++.+.
T Consensus 273 L~~Lnls~tg 282 (505)
T KOG3207|consen 273 LNQLNLSSTG 282 (505)
T ss_pred hhhhhccccC
Confidence 5555555554
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.1e-08 Score=89.58 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=33.6
Q ss_pred eecCCCcccCccccCCcCcceeeccccccCccccccCC-CCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceE
Q 014835 16 LVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRL 94 (417)
Q Consensus 16 Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~-~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L 94 (417)
|..+.|.++|. +.+..+++.|+|++|.+.. +. .++ .+.+|+.|+|++| .++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N-~I~~l~--------------------- 58 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNN-QITKLE--------------------- 58 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS---S--T---------------------
T ss_pred ccccccccccc-ccccccccccccccccccc-cc-chhhhhcCCCEEECCCC-CCcccc---------------------
Confidence 33445555555 4455567777777765443 32 244 4677777777774 222221
Q ss_pred EcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCC
Q 014835 95 VLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 95 ~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~ 171 (417)
.+..++.|+.|++++|.+.. +.+.+ ..+++|++|++++|+|.++. ..+..+++|+.|+|.+|+
T Consensus 59 -------------~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 59 -------------GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -------------T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred -------------CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 23457778888888887554 33333 35788888888888885443 356678888888888888
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-08 Score=98.57 Aligned_cols=152 Identities=19% Similarity=0.245 Sum_probs=92.2
Q ss_pred cccEEEeecCCCc---ccCccccCCcCcceeeccccccCcccccc-CCCCCCCcEEeeecCCCCCc-CCCCCccccCCCc
Q 014835 10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSMLESISSS-IFKLKSLQSIEISNCPIFER-FTEIPSCNIDGGI 84 (417)
Q Consensus 10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~L~~L~~L~Ls~c~~l~~-lp~l~~l~l~g~~ 84 (417)
+++.|||++|-+. .+-.-...|++|+.|+|+.|.+.--..+. -..+++|+.|.|+.|..... +- .
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~----------~ 216 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ----------W 216 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH----------H
Confidence 8999999999887 33344678999999999998765432221 13578999999999954210 00 1
Q ss_pred ccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC-CcccCCCCCCCEEEeeccCCCCc--chh-----
Q 014835 85 GIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL-PDELGNLEALETLIVDRTAMREV--PES----- 155 (417)
Q Consensus 85 ~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~n~l~~l--p~~----- 155 (417)
.+..+++ +.|+|.+|.....-......+..|+.|+|++|++...- -...+.++.|+.|+++.|.+.++ |+.
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh
Confidence 1223444 55666666432222222334566777777777643321 12356677777777777776432 332
Q ss_pred ccCCCCCcEEEccCCC
Q 014835 156 LGQLSSLKILVLSNIK 171 (417)
Q Consensus 156 l~~L~~L~~L~L~~n~ 171 (417)
...+++|++|++..|+
T Consensus 297 t~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 297 THTFPKLEYLNISENN 312 (505)
T ss_pred hcccccceeeecccCc
Confidence 2446677777777776
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=5.4e-08 Score=69.91 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=52.0
Q ss_pred cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCC
Q 014835 10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCP 67 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~ 67 (417)
+|++|++++|+|+.+|. .+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 58999999999999997 48899999999999988876667789999999999999974
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=5.6e-08 Score=105.06 Aligned_cols=155 Identities=26% Similarity=0.313 Sum_probs=102.7
Q ss_pred CCCcccC-cccEEEeecCCCcccCccccCCcCcceeecccccc-Cccccc-cCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835 3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSM-LESISS-SIFKLKSLQSIEISNCPIFERFTEIPSCN 79 (417)
Q Consensus 3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~-~~~lp~-~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~ 79 (417)
.|..... .++.+.+-+|.+..++....+ ++|++|-+.+|.. ...++. .|..++.|++|||++|..+..+|
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP------ 588 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP------ 588 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC------
Confidence 3444444 667777777777777665433 3677777777652 333433 35567888888888877777777
Q ss_pred cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC---Ccchh
Q 014835 80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR---EVPES 155 (417)
Q Consensus 80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~ 155 (417)
..++.|-+ ++|++++.. +..+|..+.+|+.|.+|++..+.....+|..+..|.+|++|.+...... ..-..
T Consensus 589 ----~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 589 ----SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred ----hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh
Confidence 57777777 788887764 4478888888888888888877766666666667888888887665421 11223
Q ss_pred ccCCCCCcEEEccC
Q 014835 156 LGQLSSLKILVLSN 169 (417)
Q Consensus 156 l~~L~~L~~L~L~~ 169 (417)
+..|.+|+.+....
T Consensus 664 l~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 664 LENLEHLENLSITI 677 (889)
T ss_pred hhcccchhhheeec
Confidence 45555666555533
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=3.4e-08 Score=91.09 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=18.5
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVD 41 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~ 41 (417)
+|..+.++...-..|-.-...-+.|+++...+
T Consensus 215 ~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 215 NLKTLKFSALSTENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred hhheeeeeccchhheeceeecCchhheeeeec
Confidence 66677777655444433233346777777765
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=5.9e-07 Score=88.09 Aligned_cols=59 Identities=22% Similarity=0.465 Sum_probs=33.8
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT 73 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp 73 (417)
+++.|+++++.|+.+|. + ..+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 53 ~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 56666666666666662 1 2346666666666666666544 2456666666665554444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.3e-07 Score=66.59 Aligned_cols=59 Identities=32% Similarity=0.487 Sum_probs=45.9
Q ss_pred CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCC
Q 014835 113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIK 171 (417)
Q Consensus 113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~ 171 (417)
++|++|++++|++....+..|..+++|++|++++|.+..++. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888887666555677888888888888888877764 67888888888888876
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=4.9e-07 Score=97.89 Aligned_cols=174 Identities=25% Similarity=0.248 Sum_probs=115.3
Q ss_pred cccEEEeecCC--CcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835 10 HVYTLELVKVG--IKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI 86 (417)
Q Consensus 10 ~L~~L~Ls~n~--l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l 86 (417)
.|++|-+.+|. +..++.. |..++.|++|||++|...+.+|..+++|-+|++|++++ ..+..+| ..+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP----------~~l 614 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLP----------SGL 614 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccc----------hHH
Confidence 68888888876 6666665 66788889999988888888888888888888888888 5566777 688
Q ss_pred ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccC--CccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCc
Q 014835 87 ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLK 163 (417)
Q Consensus 87 ~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~--~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~ 163 (417)
.+|+. .+|++..+..+..+|..+..|++|++|.+..... ....-..+.++.+|+.|....... .+-..+..++.|.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR 693 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence 88888 8888888877777777777788888888876431 122223345555566555543333 1112222233332
Q ss_pred ----EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 164 ----ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 164 ----~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.+.+.++... . .+..+..+ .|+.|.+.+|...
T Consensus 694 ~~~~~l~~~~~~~~--~------~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR--T------LISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HHhHhhhhcccccc--e------eecccccccCcceEEEEcCCCc
Confidence 3333333311 2 44466667 8888888888754
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4e-08 Score=90.57 Aligned_cols=175 Identities=19% Similarity=0.178 Sum_probs=110.7
Q ss_pred cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835 10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE 87 (417)
Q Consensus 10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~ 87 (417)
.|+.|||+...|+ .+..-+..+.+|+.|.|.++.+...+-..+.+-.+|+.|+|+.|+.++....- .-+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--------ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--------LLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--------HHHH
Confidence 5999999999887 56666788999999999998888877777888899999999999876654310 1234
Q ss_pred cccc-ceEEcCCCCCCCCCcc-ccc-CCCCCcEEecccccCC---ccCCcccCCCCCCCEEEeeccCC-C-CcchhccCC
Q 014835 88 RLAS-CRLVLEDCSSLQSLPS-SLC-MFKSLTSLEIIDCQYF---MILPDELGNLEALETLIVDRTAM-R-EVPESLGQL 159 (417)
Q Consensus 88 ~l~~-~~L~L~~n~~l~~lp~-~l~-~l~~L~~L~L~~n~~~---~~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~l~~L 159 (417)
+++. ..|+|+-|...+..-. .+. --.+|..|+|+|+... ..+.-....+++|.+|||++|.. + .+-..+.++
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 4555 5666666654442211 111 1245667777776421 11111234567777777777653 2 333456677
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCcc---ccC-CcceeecCCCc
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENG---LEG-IPEYLRRSPRK 201 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l---~~l-~L~~L~l~~n~ 201 (417)
+.|++|.++.|..+ +|..+ ... .|.+|++.+|-
T Consensus 338 ~~L~~lSlsRCY~i---------~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI---------IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcCC---------ChHHeeeeccCcceEEEEecccc
Confidence 77777777777632 33332 223 66777766653
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=2.1e-07 Score=87.63 Aligned_cols=188 Identities=16% Similarity=0.204 Sum_probs=114.2
Q ss_pred ccC-cccEEEeecCCCc--ccCc---cccCCcCcceeeccccccCcc-------------ccccCCCCCCCcEEeeecCC
Q 014835 7 TSC-HVYTLELVKVGIK--ELPS---SIECLSNLKKLYIVDCSMLES-------------ISSSIFKLKSLQSIEISNCP 67 (417)
Q Consensus 7 ~~~-~L~~L~Ls~n~l~--~lp~---~i~~L~~L~~L~Ls~n~~~~~-------------lp~~l~~L~~L~~L~Ls~c~ 67 (417)
.+. +|++||||.|.+. .++. -+..+..|+.|.|.+|.+... .-..+..-+.|+++...+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN- 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence 344 6777777777665 2222 245567777777776643321 1112334456777766663
Q ss_pred CCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCC----CcccccCCCCCcEEecccccCCc----cCCcccCCCCC
Q 014835 68 IFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQS----LPSSLCMFKSLTSLEIIDCQYFM----ILPDELGNLEA 138 (417)
Q Consensus 68 ~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~----lp~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~ 138 (417)
.+...+... + ...+...+. +.+.+..|.+... +-..+..+++|+.|||.+|.+.. .+...+..+++
T Consensus 168 rlen~ga~~---~--A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 168 RLENGGATA---L--AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred ccccccHHH---H--HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 222222100 0 034455566 7788887766432 23456788999999999998754 34455677889
Q ss_pred CCEEEeeccCCCC-----cchhc-cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 139 LETLIVDRTAMRE-----VPESL-GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 139 L~~L~L~~n~l~~-----lp~~l-~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
|++|++++|.+.. +-..+ ...++|+.|.|.+|..-.+. ...+..++... .|..|++++|.+.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da---~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA---ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH---HHHHHHHHhcchhhHHhcCCccccc
Confidence 9999999998832 22222 34789999999999832211 11123344556 8999999999973
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=5.9e-07 Score=90.26 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=24.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeec
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN 65 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~ 65 (417)
+|+.|++.+|.|+.+...+..+++|++|+|++|.+ +.+.. +..++.|+.|++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~-l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEG-LSTLTLLKELNLSG 149 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheecccccc-ccccc-hhhccchhhheecc
Confidence 44455555555544443344455555555555322 22222 33444455555554
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.3e-05 Score=78.77 Aligned_cols=134 Identities=26% Similarity=0.367 Sum_probs=80.7
Q ss_pred ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCc
Q 014835 28 IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLP 106 (417)
Q Consensus 28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp 106 (417)
+..+.+++.|++++| .+..+|. + ..+|+.|.+++|+.+..+|. .+ .++ +.|.+++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~----------~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPG----------SI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCc----------hh--hhhhhheEccCcccccccc
Confidence 345688999999988 5667773 2 34699999999988887773 22 134 788888886666666
Q ss_pred ccccCCCCCcEEecccccC--CccCCcccCCCCCCCEEEeeccC-C--CCcchhccCCCCCcEEEccCCCCChhhhhccc
Q 014835 107 SSLCMFKSLTSLEIIDCQY--FMILPDELGNLEALETLIVDRTA-M--REVPESLGQLSSLKILVLSNIKRLPEYLQLHL 181 (417)
Q Consensus 107 ~~l~~l~~L~~L~L~~n~~--~~~lp~~l~~l~~L~~L~L~~n~-l--~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l 181 (417)
. +|+.|++.++.. .+.+|. +|+.|.+.+++ . ..+|. .-.++|++|++++|..+.
T Consensus 112 ~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------- 170 (426)
T PRK15386 112 E------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------- 170 (426)
T ss_pred c------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCccc-------
Confidence 4 356666654432 334443 45566654322 1 11221 112578888888877443
Q ss_pred CCCCccccCCcceeecCCC
Q 014835 182 QLPENGLEGIPEYLRRSPR 200 (417)
Q Consensus 182 ~lp~~l~~l~L~~L~l~~n 200 (417)
+|..+. .+|+.|.++.+
T Consensus 171 -LP~~LP-~SLk~L~ls~n 187 (426)
T PRK15386 171 -LPEKLP-ESLQSITLHIE 187 (426)
T ss_pred -Cccccc-ccCcEEEeccc
Confidence 443221 26777777665
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1e-06 Score=88.60 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=68.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.++.+++..|.++.+-..+..+++|..|++.+|.+.+ +...+..+++|++|++++| .++.+. .+..+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N-~I~~i~-----------~l~~l 139 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFN-KITKLE-----------GLSTL 139 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccc-cccccc-----------chhhc
Confidence 4556666667776644446777788888887755443 3333566778888888874 333332 33444
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCCC
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMRE 151 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~~ 151 (417)
+. +.|++.+|.+... ..+..++.|+.+++++|.+...-+ . +..+.+|+.+.+.+|.+..
T Consensus 140 ~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 44 5555555543321 122235555666666655433222 1 3445555555555555543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=1.5e-06 Score=81.98 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=111.6
Q ss_pred cccEEEeecCCCc-----ccCccccCCcCcceeeccccccCcc----ccc-------cCCCCCCCcEEeeecCCCCCcCC
Q 014835 10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSMLES----ISS-------SIFKLKSLQSIEISNCPIFERFT 73 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~~~----lp~-------~l~~L~~L~~L~Ls~c~~l~~lp 73 (417)
.+++|+|++|.+. .+-..+.+.++|+.-++++ -+++. +|. .+...++|++|+||.|-.-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 7899999999886 3555577788999999987 45542 333 34456789999999963221111
Q ss_pred -CCCccccCCCcccccccc-ceEEcCCCCCCCCC-------------cccccCCCCCcEEecccccCCcc----CCcccC
Q 014835 74 -EIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSL-------------PSSLCMFKSLTSLEIIDCQYFMI----LPDELG 134 (417)
Q Consensus 74 -~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~l-------------p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~ 134 (417)
.+. .-+..... +.|.|.+|.+-..- ..-+..-+.|+.+..+.|.+... +...+.
T Consensus 110 ~~l~-------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 110 RGLE-------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred HHHH-------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 110 23344555 77777777542211 11233456788888877764321 223455
Q ss_pred CCCCCCEEEeeccCCC-----CcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 135 NLEALETLIVDRTAMR-----EVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 135 ~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
..+.|+.+.+..|.|. -+-..+..+++|+.|||..|. ++... ...+...+..+ +|+.|++++|.++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~eg--s~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEG--SVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHH--HHHHHHHhcccchheeecccccccc
Confidence 5678888888888773 123456778888888888887 33110 11123334445 6888888888765
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.6e-05 Score=52.78 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=25.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSML 45 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~ 45 (417)
+|++|++++|+|+++|+.+++|++|++|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 477888888888888777788888888888876543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=6.6e-06 Score=76.19 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=88.0
Q ss_pred cccEEEeecCCCc---ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCC--------CCCcCCCCCcc
Q 014835 10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCP--------IFERFTEIPSC 78 (417)
Q Consensus 10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~--------~l~~lp~l~~l 78 (417)
+++.|||.+|.|+ +|-.-+.+|+.|++|+|+.|.+...+-..=..+.+|++|.|.|.. .+..+|.+.++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 7889999999987 555557789999999999876654432210256788999888742 12333333333
Q ss_pred ccCCC---------cccccccc--ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEe
Q 014835 79 NIDGG---------IGIERLAS--CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIV 144 (417)
Q Consensus 79 ~l~g~---------~~l~~l~~--~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L 144 (417)
+++.+ ..+..... .+|.+..|.... ..-.--..++++..+.+..|++-. .-.......+.+..|+|
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 33322 01111111 111111110000 000000123455555555554322 11223445666777788
Q ss_pred eccCCCCcc--hhccCCCCCcEEEccCCC
Q 014835 145 DRTAMREVP--ESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 145 ~~n~l~~lp--~~l~~L~~L~~L~L~~n~ 171 (417)
+.|+|.+.. +.+..+++|..|.+++++
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCc
Confidence 888875543 356778888888888877
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=5.5e-07 Score=91.97 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=80.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.|...+.+.|.+..+..++.-++.|+.|||+.|++...- .+..+++|++|||++ +.+..+|.+.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsy-N~L~~vp~l~------------- 228 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSY-NCLRHVPQLS------------- 228 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhccccccccccc-chhccccccc-------------
Confidence 567777888888888888888888888888887665543 467788888888888 4455444311
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEc
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L 167 (417)
...+ .|+.|.+++|.+.. + ..+.++.+|+.||+++|-+.... .-+..|..|+.|.|
T Consensus 229 -------------------~~gc-~L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 229 -------------------MVGC-KLQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred -------------------hhhh-hheeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 0112 26667777665332 1 23566777777777777663221 23456677777777
Q ss_pred cCCC
Q 014835 168 SNIK 171 (417)
Q Consensus 168 ~~n~ 171 (417)
.+|+
T Consensus 287 eGNP 290 (1096)
T KOG1859|consen 287 EGNP 290 (1096)
T ss_pred cCCc
Confidence 7777
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=4e-05 Score=50.93 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 137 EALETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 137 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
++|++|++++|+|+++|..+++|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35677777777777776667777777777777776
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.3e-06 Score=77.38 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=94.2
Q ss_pred cccEEEeecCCCc-ccCccccCCcCcceeeccccccCcccc--ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835 10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESIS--SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI 86 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp--~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l 86 (417)
.|+.|.|+++++. .|-..|..-.+|+.|+|+.|+-.++.. --+.+++.|..|+|++|-..+..-. ..+
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt---------v~V 281 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT---------VAV 281 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh---------HHH
Confidence 7899999999987 666678888999999999998666432 2357889999999999965433210 111
Q ss_pred cccc-c-ceEEcCCCCCCC---CCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCC--CcchhccC
Q 014835 87 ERLA-S-CRLVLEDCSSLQ---SLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMR--EVPESLGQ 158 (417)
Q Consensus 87 ~~l~-~-~~L~L~~n~~l~---~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~ 158 (417)
.... + ..|+|+|+...- .+..-...+++|.+|||++|..+. .....+-+++.|++|.++.|..- +.--.+..
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s 361 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS 361 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc
Confidence 1111 1 445555543211 111122356777777777765332 22234556777777777777531 11113566
Q ss_pred CCCCcEEEccCCC
Q 014835 159 LSSLKILVLSNIK 171 (417)
Q Consensus 159 L~~L~~L~L~~n~ 171 (417)
.++|.+|++.++-
T Consensus 362 ~psl~yLdv~g~v 374 (419)
T KOG2120|consen 362 KPSLVYLDVFGCV 374 (419)
T ss_pred CcceEEEEecccc
Confidence 7778888876653
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=6.3e-06 Score=67.99 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=75.4
Q ss_pred eEEcCCCCCCCCCcc---cccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 93 RLVLEDCSSLQSLPS---SLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 93 ~L~L~~n~~l~~lp~---~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
.++|++|.+ ..++. .+.....|...+|++|.+ ..+|..| ...+.++.|++++|.|.++|..+..++.|+.|+++
T Consensus 31 ~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchh-hHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 455555533 22333 334556677778988874 4555554 34568899999999999999999999999999999
Q ss_pred CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
.|+... .|..+..+ ++..|+..+|.+. +|..
T Consensus 109 ~N~l~~--------~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNA--------EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCcccc--------chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 998443 67777778 8888888888754 5544
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=5.9e-06 Score=84.65 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=11.2
Q ss_pred cccCCCCCCCcEEeeecCC
Q 014835 49 SSSIFKLKSLQSIEISNCP 67 (417)
Q Consensus 49 p~~l~~L~~L~~L~Ls~c~ 67 (417)
|-.|..+.+|++|.|.+|+
T Consensus 102 pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred CceeccccceeeEEecCcc
Confidence 3345556666666666664
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.37 E-value=9.6e-06 Score=66.92 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=28.3
Q ss_pred CCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh
Q 014835 103 QSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES 155 (417)
Q Consensus 103 ~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 155 (417)
..+|..+..++.|+.|+++.|++. ..|..+..+.+|..|+..+|.+.++|..
T Consensus 90 sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 90 SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 345555555666666666665532 3344444455566666666665555543
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00058 Score=60.18 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCCCCcch----hccCCCCCcEEEccCC
Q 014835 111 MFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAMREVPE----SLGQLSSLKILVLSNI 170 (417)
Q Consensus 111 ~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L~~n 170 (417)
.+++|+.|.|.+|++.. .+ +.+..++.|++|.+-+|.+..-+. -+..+++|+.||+.+-
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 34556666666665422 11 124455566666666666543322 3455666666666543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00017 Score=76.45 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=59.7
Q ss_pred cccEEEeecCCC-c-ccCcccc-CCcCcceeeccccccCc-cccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835 10 HVYTLELVKVGI-K-ELPSSIE-CLSNLKKLYIVDCSMLE-SISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85 (417)
Q Consensus 10 ~L~~L~Ls~n~l-~-~lp~~i~-~L~~L~~L~Ls~n~~~~-~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~ 85 (417)
+|+.|+++|... . .-|..++ .||.|+.|.+++=.+.. .+-.-..++++|..||+|+++ ++.+ ..
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-----------~G 190 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-----------SG 190 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-----------HH
Confidence 566666666332 1 2222343 36666666666522211 112223456666666666632 2211 24
Q ss_pred cccccc-ceEEcCCCCCCC-CCcccccCCCCCcEEecccccCCccC--C----cccCCCCCCCEEEeeccCC
Q 014835 86 IERLAS-CRLVLEDCSSLQ-SLPSSLCMFKSLTSLEIIDCQYFMIL--P----DELGNLEALETLIVDRTAM 149 (417)
Q Consensus 86 l~~l~~-~~L~L~~n~~l~-~lp~~l~~l~~L~~L~L~~n~~~~~l--p----~~l~~l~~L~~L~L~~n~l 149 (417)
+++|++ +.|.+.+-.+.. .--..+.+|++|+.||+|........ . +.-..+++|+.||.|++.+
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 455555 555554432222 11123456666666666654432211 0 1112355666666666555
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00059 Score=60.15 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=23.2
Q ss_pred cCCCCCcEEecccccCCccCC---cccCCCCCCCEEEeecc
Q 014835 110 CMFKSLTSLEIIDCQYFMILP---DELGNLEALETLIVDRT 147 (417)
Q Consensus 110 ~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~n 147 (417)
..+++|++|.+-+|+....-- -.+..+++|+.||..+-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 356777777777776443211 12556778888877653
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.00048 Score=73.14 Aligned_cols=82 Identities=20% Similarity=0.166 Sum_probs=41.5
Q ss_pred cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcch-------hccC
Q 014835 88 RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVPE-------SLGQ 158 (417)
Q Consensus 88 ~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp~-------~l~~ 158 (417)
++++ ..||++++.+.. + ..++.|++|+.|.+.+-.+.. ..-..+.++++|+.||+|.......+. .-..
T Consensus 171 sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 4455 566666654322 2 455566666666665533221 111234556666666666654422221 1123
Q ss_pred CCCCcEEEccCCC
Q 014835 159 LSSLKILVLSNIK 171 (417)
Q Consensus 159 L~~L~~L~L~~n~ 171 (417)
|++|+.||.++..
T Consensus 249 LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 249 LPELRFLDCSGTD 261 (699)
T ss_pred CccccEEecCCcc
Confidence 6666666666655
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.23 E-value=0.0046 Score=57.09 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=37.7
Q ss_pred cccEEEeecCCCc-----ccCccccCCcCcceeeccccccCcc----cc-------ccCCCCCCCcEEeeecCCCCCcCC
Q 014835 10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSMLES----IS-------SSIFKLKSLQSIEISNCPIFERFT 73 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~~~----lp-------~~l~~L~~L~~L~Ls~c~~l~~lp 73 (417)
.++.++||+|-|. .+-..|.+-.+|+..++++ -+++. +| ..+-++++|+..+||.|-.-..+|
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5677788887775 2444466667777777776 34432 12 224466777777777764433333
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.15 E-value=0.0019 Score=35.89 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=11.1
Q ss_pred cccEEEeecCCCcccCcccc
Q 014835 10 HVYTLELVKVGIKELPSSIE 29 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~ 29 (417)
+|++|+|++|+|+++|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666665555555543
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.94 E-value=0.0042 Score=56.92 Aligned_cols=112 Identities=20% Similarity=0.236 Sum_probs=54.1
Q ss_pred CCcCcceeeccccccCccccccCCCCCCCcEEeeecC--CCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCC--C
Q 014835 30 CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC--PIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQ--S 104 (417)
Q Consensus 30 ~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c--~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~--~ 104 (417)
.+..|+.|.+.++..++ +- .+-.|++|+.|.++.| .....++ .....+++ +++++++|++.- .
T Consensus 41 ~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~----------vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLE----------VLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred cccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccce----------ehhhhCCceeEEeecCCccccccc
Confidence 34445555554433222 11 1334556666666655 2222222 12233355 566666665432 1
Q ss_pred CcccccCCCCCcEEecccccCCccCC---cccCCCCCCCEEEeeccCCCCcch
Q 014835 105 LPSSLCMFKSLTSLEIIDCQYFMILP---DELGNLEALETLIVDRTAMREVPE 154 (417)
Q Consensus 105 lp~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~n~l~~lp~ 154 (417)
++ .+..+.+|..|++..|.....-- ..+.-+++|+.|+-....-.+.|.
T Consensus 109 l~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 109 LR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred cc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 11 23466778888888887544111 124456777777644433334443
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.0064 Score=55.75 Aligned_cols=61 Identities=23% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCCCCcEEecccc--cCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCC
Q 014835 111 MFKSLTSLEIIDC--QYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 111 ~l~~L~~L~L~~n--~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~ 171 (417)
.|++|+.|.++.| ...+.++.....+++|++|++++|++..+- ..+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 5678888888888 555566655666688888888888775321 134566677777777776
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.42 E-value=0.059 Score=44.17 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=12.7
Q ss_pred ccCCcCcceeeccccccCccccccCCCCCCCcEEeeec
Q 014835 28 IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN 65 (417)
Q Consensus 28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~ 65 (417)
+..+++|+.+.+.. .....-...+.++++|+.+.+..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 44444555555543 22211123344444555555544
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.01 Score=55.52 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=51.8
Q ss_pred ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC--CCcchhccCCCCCcEEEc
Q 014835 92 CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM--REVPESLGQLSSLKILVL 167 (417)
Q Consensus 92 ~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~l~~L~~L~~L~L 167 (417)
+.++|.+|.+.. .+...+.+|+.|+.|+|+.|++...+-..-....+|+.|.|.++.+ +.....+..++.++.|.+
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 566777665533 2333455788888888888876543322113456788888888777 455556677777888887
Q ss_pred cCCC
Q 014835 168 SNIK 171 (417)
Q Consensus 168 ~~n~ 171 (417)
+.|.
T Consensus 154 S~N~ 157 (418)
T KOG2982|consen 154 SDNS 157 (418)
T ss_pred ccch
Confidence 7774
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.01 Score=32.91 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=7.8
Q ss_pred CCEEEeeccCCCCcchh
Q 014835 139 LETLIVDRTAMREVPES 155 (417)
Q Consensus 139 L~~L~L~~n~l~~lp~~ 155 (417)
|++|++++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.29 E-value=0.1 Score=42.73 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=32.9
Q ss_pred cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeec
Q 014835 10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISN 65 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~ 65 (417)
+|+.+.+.. .++.|+.. +..+++|+.+.+.. . +..++ ..+.++++|+.+.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc
Confidence 899999884 67888875 78888999999987 3 44444 4577787899999864
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.17 E-value=0.06 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=5.8
Q ss_pred CCCEEEeeccCCCCcc
Q 014835 138 ALETLIVDRTAMREVP 153 (417)
Q Consensus 138 ~L~~L~L~~n~l~~lp 153 (417)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555544443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.09 E-value=0.048 Score=28.10 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=8.0
Q ss_pred cccEEEeecCCCcccC
Q 014835 10 HVYTLELVKVGIKELP 25 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp 25 (417)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666777777666655
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.22 E-value=0.047 Score=53.39 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=44.6
Q ss_pred CCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCC-CCc-----chhccCCCCCcEEEccCCCCChhhhhcccC
Q 014835 111 MFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAM-REV-----PESLGQLSSLKILVLSNIKRLPEYLQLHLQ 182 (417)
Q Consensus 111 ~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l-~~l-----p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~ 182 (417)
+.+.|+.+++.+|.... .+...-.+++.|+.|.++++.. ++. ...-..+..|..|.|++++.+++.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~------ 417 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA------ 417 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH------
Confidence 45566666666654321 1222234566666666666544 211 122244566777777777755543
Q ss_pred CCCccccC-CcceeecCCCc
Q 014835 183 LPENGLEG-IPEYLRRSPRK 201 (417)
Q Consensus 183 lp~~l~~l-~L~~L~l~~n~ 201 (417)
.-..+... .|+.+++-+|.
T Consensus 418 ~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 418 TLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred HHHHHhhCcccceeeeechh
Confidence 22223333 66666666665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=0.0066 Score=56.24 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=32.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC 66 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c 66 (417)
+++.|+.-|+.|..|.- ...++.|++|.|+-|++.. +.. +..+++|+.|+|..|
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIss-L~p-l~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISS-LAP-LQRCTRLKELYLRKN 73 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeecccccc-chh-HHHHHHHHHHHHHhc
Confidence 45666777766665532 4456677777777654433 322 556667777777663
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.28 E-value=0.053 Score=50.29 Aligned_cols=170 Identities=17% Similarity=0.073 Sum_probs=102.0
Q ss_pred cccEEEeecC--CC-c-ccCcc-------ccCCcCcceeeccccccCccccc----cCCCCCCCcEEeeecCCCCCcCCC
Q 014835 10 HVYTLELVKV--GI-K-ELPSS-------IECLSNLKKLYIVDCSMLESISS----SIFKLKSLQSIEISNCPIFERFTE 74 (417)
Q Consensus 10 ~L~~L~Ls~n--~l-~-~lp~~-------i~~L~~L~~L~Ls~n~~~~~lp~----~l~~L~~L~~L~Ls~c~~l~~lp~ 74 (417)
+|+..+++.- +. . ++|++ +-.+++|+..+||+|.+....|. -++.-+.|++|.|++| .++.+..
T Consensus 59 ~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG 137 (388)
T COG5238 59 NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAG 137 (388)
T ss_pred ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccch
Confidence 7777777762 22 2 45543 45789999999999987766654 3567789999999985 4443321
Q ss_pred CCccccCCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-----cccCCCCCCCEEEeeccCC
Q 014835 75 IPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-----DELGNLEALETLIVDRTAM 149 (417)
Q Consensus 75 l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-----~~l~~l~~L~~L~L~~n~l 149 (417)
..|+ +.-..|..|+. ...-+.|+......|++.. .| ..+..-..|+++.+..|.|
T Consensus 138 ---------~rig---kal~~la~nKK-------aa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 138 ---------GRIG---KALFHLAYNKK-------AADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred ---------hHHH---HHHHHHHHHhh-------hccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCc
Confidence 0111 00011112211 2245678888888776432 22 1233335788999999988
Q ss_pred CC--cc----hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 150 RE--VP----ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 150 ~~--lp----~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.. +. ..+..+.+|+.|||..|. ++-..+.. +...+... .|+.|.+.+|.++
T Consensus 198 rpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~--La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 198 RPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRY--LADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHH--HHHHhcccchhhhccccchhhc
Confidence 42 11 234568899999999988 44111111 22233344 6788999999865
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=0.012 Score=54.64 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=25.2
Q ss_pred CCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEEEccCCC
Q 014835 111 MFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSNIK 171 (417)
Q Consensus 111 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~ 171 (417)
.|+.|+.|.|+-|++...-| +..+++|++|+|..|.|.++.+ -+.++++|+.|.|..|+
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 34444444444444332211 3344444444444444433322 23444444444444444
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.43 E-value=0.36 Score=27.63 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=12.1
Q ss_pred CCCCEEEeeccCCCCcchh
Q 014835 137 EALETLIVDRTAMREVPES 155 (417)
Q Consensus 137 ~~L~~L~L~~n~l~~lp~~ 155 (417)
++|+.|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666653
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.43 E-value=0.36 Score=27.63 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=12.1
Q ss_pred CCCCEEEeeccCCCCcchh
Q 014835 137 EALETLIVDRTAMREVPES 155 (417)
Q Consensus 137 ~~L~~L~L~~n~l~~lp~~ 155 (417)
++|+.|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666653
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.10 E-value=0.15 Score=50.07 Aligned_cols=183 Identities=17% Similarity=0.110 Sum_probs=108.9
Q ss_pred cccEEEeecC-CCc--ccCccccCCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCc
Q 014835 10 HVYTLELVKV-GIK--ELPSSIECLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84 (417)
Q Consensus 10 ~L~~L~Ls~n-~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~ 84 (417)
+|++|+++.+ .++ .+-.-...++.|+.+.+++|.-.+. +-..-....-+..+++..|+.++...- .
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---------~ 287 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---------W 287 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH---------H
Confidence 7888888873 333 2333355677788888888754431 111112344566677777765554321 1
Q ss_pred cc-ccccc-ceEEcCCCCCCCCCcc--cccCCCCCcEEecccccCCccCC--cccCCCCCCCEEEeeccCCC---Ccchh
Q 014835 85 GI-ERLAS-CRLVLEDCSSLQSLPS--SLCMFKSLTSLEIIDCQYFMILP--DELGNLEALETLIVDRTAMR---EVPES 155 (417)
Q Consensus 85 ~l-~~l~~-~~L~L~~n~~l~~lp~--~l~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~n~l~---~lp~~ 155 (417)
.+ ..... +.|..++|...+..+- -..+..+|+.|-+++|+..+..- ..-.+.+.|+.|++.++... ++-..
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 11 22344 7778887766543321 12356899999999998543321 11245778999999888762 23333
Q ss_pred ccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 156 LGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 156 l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
-.+++.|+.|.|++|..+++..-. .+...-... .+..+.+++|++.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~--~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIR--HLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhh--hhhhccccccccceeeecCCCCc
Confidence 357889999999999866643000 012222334 7888999999854
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.76 E-value=0.19 Score=51.04 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=28.0
Q ss_pred CCCCcEEecccccC-CccCCcccC-CCCCCCEEEeeccC-CC--CcchhccCCCCCcEEEccCCCCC
Q 014835 112 FKSLTSLEIIDCQY-FMILPDELG-NLEALETLIVDRTA-MR--EVPESLGQLSSLKILVLSNIKRL 173 (417)
Q Consensus 112 l~~L~~L~L~~n~~-~~~lp~~l~-~l~~L~~L~L~~n~-l~--~lp~~l~~L~~L~~L~L~~n~~l 173 (417)
+.+|+.|+++.+.. ....-..+. .+++|+.|.+.++. ++ .+-.....+++|++|+|+.|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45555555555542 211111111 24556666555444 32 22222344555666666665543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.38 E-value=0.026 Score=51.14 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=57.8
Q ss_pred cccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcE
Q 014835 86 IERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKI 164 (417)
Q Consensus 86 l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~ 164 (417)
+..... +.||++.|+. ..+-..+..++.|..|+++.|. ...+|..++....+..+++..|+.+..|.+.+.++++++
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 333444 5555555532 2333445566777777877765 455677777777777788888888888888888888888
Q ss_pred EEccCCCCC
Q 014835 165 LVLSNIKRL 173 (417)
Q Consensus 165 L~L~~n~~l 173 (417)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888777733
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.20 E-value=0.07 Score=48.41 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=70.9
Q ss_pred cccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCcc
Q 014835 108 SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENG 187 (417)
Q Consensus 108 ~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l 187 (417)
.+......+.||++.|.+ ..+-..+..++.|..|+++.|++..+|..++.+..++.+++.+|. .+ . .|.+.
T Consensus 37 ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~-~------~p~s~ 107 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HS-Q------QPKSQ 107 (326)
T ss_pred hhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hh-h------CCccc
Confidence 455678888999998873 334445667888999999999999999999999999999998887 44 3 88888
Q ss_pred ccC-CcceeecCCCccc
Q 014835 188 LEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 188 ~~l-~L~~L~l~~n~L~ 203 (417)
... +++++++..+.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 888 9999998888754
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.78 E-value=0.38 Score=42.78 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=27.4
Q ss_pred CcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCc-chhcc-CCCCCcEEEccCCCCChh
Q 014835 115 LTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REV-PESLG-QLSSLKILVLSNIKRLPE 175 (417)
Q Consensus 115 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~l-p~~l~-~L~~L~~L~L~~n~~l~~ 175 (417)
++.++.+++.+...--+.+..+++|+.|.+.+|.- .+. -+.++ -.++|+.|+|++|..+++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 44555555444433333444455555555544421 110 00111 234566666666665553
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.87 E-value=0.56 Score=41.72 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=28.6
Q ss_pred cccEEEeecCCCcc-cCccccCCcCcceeeccccccCcccc-ccCC-CCCCCcEEeeecCCC
Q 014835 10 HVYTLELVKVGIKE-LPSSIECLSNLKKLYIVDCSMLESIS-SSIF-KLKSLQSIEISNCPI 68 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~-~L~~L~~L~Ls~c~~ 68 (417)
.++.+|-++..|.. =-..+.+++.++.|.+.+|...+..- ..++ -.++|+.|+|++|..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence 45555555555541 11225555666666666655444211 0111 245666666666643
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.01 E-value=1.7 Score=25.09 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=13.1
Q ss_pred CCCCEEEeeccCCCCcch
Q 014835 137 EALETLIVDRTAMREVPE 154 (417)
Q Consensus 137 ~~L~~L~L~~n~l~~lp~ 154 (417)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=73.75 E-value=0.038 Score=56.33 Aligned_cols=90 Identities=24% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCCCcEEecccccCCccC----CcccCCCCC-CCEEEeeccCCCCc-----chhccCC-CCCcEEEccCCCCChhhhhc
Q 014835 111 MFKSLTSLEIIDCQYFMIL----PDELGNLEA-LETLIVDRTAMREV-----PESLGQL-SSLKILVLSNIKRLPEYLQL 179 (417)
Q Consensus 111 ~l~~L~~L~L~~n~~~~~l----p~~l~~l~~-L~~L~L~~n~l~~l-----p~~l~~L-~~L~~L~L~~n~~l~~~l~~ 179 (417)
...++++|.+.+|.++... -..+...+. +..|++..|.+.+. ...+..+ ..++.++++.|.+.. ..
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~-~~-- 278 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE-KG-- 278 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc-cc--
Confidence 3556666666666543211 112233333 45566666666322 2233334 455666666666222 10
Q ss_pred ccCCCCccccC-CcceeecCCCccc
Q 014835 180 HLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 180 ~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
...+...+... .++.+.+..|.+.
T Consensus 279 ~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHhhhHHHHHhhcccCccc
Confidence 00122233334 5666666666544
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.80 E-value=0.03 Score=57.06 Aligned_cols=80 Identities=29% Similarity=0.291 Sum_probs=39.9
Q ss_pred ceEEcCCCCCCCC----CcccccCCCC-CcEEecccccCCcc----CCcccCCC-CCCCEEEeeccCCC-----Ccchhc
Q 014835 92 CRLVLEDCSSLQS----LPSSLCMFKS-LTSLEIIDCQYFMI----LPDELGNL-EALETLIVDRTAMR-----EVPESL 156 (417)
Q Consensus 92 ~~L~L~~n~~l~~----lp~~l~~l~~-L~~L~L~~n~~~~~----lp~~l~~l-~~L~~L~L~~n~l~-----~lp~~l 156 (417)
++|.+.+|..... +...+...++ +..|++..|++... +.+.+..+ ..++.++++.|.++ .+...+
T Consensus 207 e~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l 286 (478)
T KOG4308|consen 207 ETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVL 286 (478)
T ss_pred HHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHH
Confidence 5666666644321 1112233333 55566666654322 22233334 45666666666662 233445
Q ss_pred cCCCCCcEEEccCCC
Q 014835 157 GQLSSLKILVLSNIK 171 (417)
Q Consensus 157 ~~L~~L~~L~L~~n~ 171 (417)
..+++++.|.+++|.
T Consensus 287 ~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 287 VSCRQLEELSLSNNP 301 (478)
T ss_pred hhhHHHHHhhcccCc
Confidence 555666666666666
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=64.28 E-value=2 Score=43.44 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=66.5
Q ss_pred ccc-ceEEcCCCCCCCC--CcccccCCCCCcEEecccc-cCCccCC----cccCCCCCCCEEEeeccC-CCCcc-hhc-c
Q 014835 89 LAS-CRLVLEDCSSLQS--LPSSLCMFKSLTSLEIIDC-QYFMILP----DELGNLEALETLIVDRTA-MREVP-ESL-G 157 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~--lp~~l~~l~~L~~L~L~~n-~~~~~lp----~~l~~l~~L~~L~L~~n~-l~~lp-~~l-~ 157 (417)
.+. +.+.+.+|..+.. +-......+.|+.|++++| ......+ .....+.+|+.|+++.+. +++.- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 445 6666776665554 3344567889999999873 2222222 233456888999998887 44321 223 2
Q ss_pred CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835 158 QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK 201 (417)
Q Consensus 158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~ 201 (417)
.+++|+.|.+.+|..+++. .+-...... .|+.|+++.|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~-----gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDE-----GLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchh-----HHHHHHHhcCcccEEeeecCc
Confidence 3789999998888755433 022122233 69999999887
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.93 E-value=5.4 Score=22.67 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=10.2
Q ss_pred CCCcEEeeecCCCCC
Q 014835 56 KSLQSIEISNCPIFE 70 (417)
Q Consensus 56 ~~L~~L~Ls~c~~l~ 70 (417)
++|+.|+|++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567777777775544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.29 E-value=6.3 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=6.9
Q ss_pred CCCCEEEeeccCCC
Q 014835 137 EALETLIVDRTAMR 150 (417)
Q Consensus 137 ~~L~~L~L~~n~l~ 150 (417)
++|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34455555555543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.85 E-value=1.2 Score=24.83 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=5.7
Q ss_pred cCcceeecccccc
Q 014835 32 SNLKKLYIVDCSM 44 (417)
Q Consensus 32 ~~L~~L~Ls~n~~ 44 (417)
++|++|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4555555555543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.84 E-value=13 Score=21.59 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.9
Q ss_pred CCCEEEeeccCC
Q 014835 138 ALETLIVDRTAM 149 (417)
Q Consensus 138 ~L~~L~L~~n~l 149 (417)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344555555544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.73 E-value=21 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.4
Q ss_pred CCCCCCcccceEEEEEEe
Q 014835 260 DFLNNKILVGFAFCIVVA 277 (417)
Q Consensus 260 ~~~~~~~~~gf~~c~v~~ 277 (417)
-|+.....+||++-.+|.
T Consensus 439 v~~~~~~~l~ftv~G~f~ 456 (585)
T KOG3763|consen 439 VWYQTGNLLGFTVAGVFR 456 (585)
T ss_pred eeecccceEEEEEEEEee
Confidence 455554477777777764
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.20 E-value=30 Score=35.72 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=14.6
Q ss_pred CCCCEEEeeccCCCCcc---hhccCCCCCcEEEccCC
Q 014835 137 EALETLIVDRTAMREVP---ESLGQLSSLKILVLSNI 170 (417)
Q Consensus 137 ~~L~~L~L~~n~l~~lp---~~l~~L~~L~~L~L~~n 170 (417)
+.+..+.|++|++..+. .--..-++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444455555543221 11123345555555555
Done!