Query 014835
Match_columns 417
No_of_seqs 581 out of 3061
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 18:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.2E-22 4.3E-27 196.1 18.2 215 10-257 82-309 (328)
2 4fcg_A Uncharacterized protein 99.9 1.8E-22 6.3E-27 194.9 16.4 199 2-213 95-301 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 7.9E-22 2.7E-26 189.1 13.8 193 3-203 68-281 (313)
4 3rgz_A Protein brassinosteroid 99.9 1.4E-21 4.8E-26 209.4 16.3 197 3-206 434-722 (768)
5 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-21 1.8E-25 180.6 17.6 193 2-210 25-222 (285)
6 1ogq_A PGIP-2, polygalacturona 99.8 3.1E-21 1.1E-25 184.9 12.6 176 10-203 51-234 (313)
7 3rgz_A Protein brassinosteroid 99.8 7.4E-21 2.5E-25 203.9 15.9 128 3-130 410-555 (768)
8 2o6q_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 170.1 19.4 182 10-211 17-203 (270)
9 4eco_A Uncharacterized protein 99.8 1.8E-20 6.2E-25 196.7 13.8 180 10-207 82-371 (636)
10 2xwt_C Thyrotropin receptor; s 99.8 6.8E-20 2.3E-24 168.5 14.2 194 1-213 24-229 (239)
11 4eco_A Uncharacterized protein 99.8 1.9E-20 6.5E-25 196.5 11.8 195 3-206 198-450 (636)
12 2z66_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 174.8 14.3 184 2-203 21-212 (306)
13 1xku_A Decorin; proteoglycan, 99.8 5E-19 1.7E-23 170.5 20.2 189 2-212 45-239 (330)
14 3zyj_A Leucine-rich repeat-con 99.8 2.4E-19 8.4E-24 179.7 18.5 198 2-209 57-275 (440)
15 2z62_A TOLL-like receptor 4, v 99.8 1.3E-19 4.6E-24 170.1 15.5 193 2-212 21-223 (276)
16 3v47_A TOLL-like receptor 5B a 99.8 2.6E-19 8.9E-24 179.8 17.6 90 114-210 276-368 (455)
17 2o6q_A Variable lymphocyte rec 99.8 8.3E-19 2.8E-23 164.3 19.4 184 2-203 30-218 (270)
18 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-19 8.9E-24 168.9 16.0 176 10-203 57-238 (285)
19 3zyi_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 179.0 18.1 196 2-207 68-284 (452)
20 3m19_A Variable lymphocyte rec 99.8 5.7E-19 2E-23 163.6 17.6 175 10-203 15-192 (251)
21 1p9a_G Platelet glycoprotein I 99.8 6E-19 2.1E-23 167.2 18.1 175 10-207 11-190 (290)
22 2ft3_A Biglycan; proteoglycan, 99.8 5E-19 1.7E-23 170.8 17.3 193 2-206 47-258 (332)
23 2z80_A TOLL-like receptor 2, v 99.8 7.6E-20 2.6E-24 178.0 11.3 159 2-171 45-209 (353)
24 4ecn_A Leucine-rich repeat pro 99.8 9.6E-20 3.3E-24 196.1 13.0 179 10-207 324-613 (876)
25 3o6n_A APL1; leucine-rich repe 99.8 3.3E-19 1.1E-23 175.8 15.9 66 133-206 244-312 (390)
26 2z66_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 171.2 12.6 193 2-211 42-245 (306)
27 3v47_A TOLL-like receptor 5B a 99.8 1.4E-18 4.7E-23 174.5 17.9 204 2-213 24-347 (455)
28 2id5_A Lingo-1, leucine rich r 99.8 1.9E-18 6.5E-23 174.8 17.9 187 10-203 57-285 (477)
29 3zyi_A Leucine-rich repeat-con 99.8 1.7E-18 5.9E-23 174.1 17.4 184 10-203 100-303 (452)
30 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6.2E-23 173.4 17.4 188 6-203 84-292 (440)
31 3oja_B Anopheles plasmodium-re 99.8 8.9E-19 3.1E-23 182.5 15.6 112 92-213 235-348 (597)
32 2id5_A Lingo-1, leucine rich r 99.8 2.4E-18 8.1E-23 174.1 17.6 160 2-171 25-187 (477)
33 4ecn_A Leucine-rich repeat pro 99.8 3.2E-19 1.1E-23 192.1 11.7 180 3-203 440-657 (876)
34 3rfs_A Internalin B, repeat mo 99.8 3.8E-18 1.3E-22 160.0 17.6 174 10-203 42-218 (272)
35 3t6q_A CD180 antigen; protein- 99.8 2.8E-18 9.5E-23 178.6 18.0 194 10-207 279-494 (606)
36 3rfs_A Internalin B, repeat mo 99.8 1.9E-18 6.4E-23 162.1 15.0 182 2-207 55-241 (272)
37 2z62_A TOLL-like receptor 4, v 99.8 1.2E-18 4E-23 163.6 13.3 180 6-203 48-237 (276)
38 1wwl_A Monocyte differentiatio 99.8 5.2E-19 1.8E-23 169.3 10.6 176 10-205 96-290 (312)
39 1xku_A Decorin; proteoglycan, 99.8 5E-18 1.7E-22 163.5 17.3 191 6-210 72-284 (330)
40 3o6n_A APL1; leucine-rich repe 99.8 3.1E-18 1.1E-22 168.8 16.0 119 92-220 229-349 (390)
41 1p9a_G Platelet glycoprotein I 99.8 4.4E-18 1.5E-22 161.3 16.5 181 2-203 24-208 (290)
42 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.9E-23 177.3 12.8 186 10-207 35-232 (487)
43 3m19_A Variable lymphocyte rec 99.8 7E-18 2.4E-22 156.3 16.9 160 2-171 28-190 (251)
44 3t6q_A CD180 antigen; protein- 99.8 5.1E-18 1.7E-22 176.6 17.6 205 2-213 292-524 (606)
45 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-18 4.8E-23 166.7 11.5 187 10-207 35-232 (317)
46 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-18 7.1E-23 179.6 12.3 181 10-207 351-539 (606)
47 1wwl_A Monocyte differentiatio 99.8 1.8E-18 6E-23 165.6 10.4 180 10-207 64-271 (312)
48 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-17 6.1E-22 159.8 17.0 191 6-211 74-286 (332)
49 3oja_B Anopheles plasmodium-re 99.7 1.1E-17 3.9E-22 174.1 16.4 176 10-203 76-291 (597)
50 2z80_A TOLL-like receptor 2, v 99.7 2.2E-18 7.4E-23 167.7 10.3 197 6-212 72-300 (353)
51 4fmz_A Internalin; leucine ric 99.7 2.1E-17 7.1E-22 160.0 17.0 188 3-207 81-305 (347)
52 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.5E-22 158.2 15.6 167 10-205 42-211 (308)
53 3bz5_A Internalin-J, INLJ; leu 99.7 1.1E-16 3.8E-21 161.3 20.8 180 10-211 65-255 (457)
54 3vq2_A TLR4, TOLL-like recepto 99.7 1.1E-17 3.7E-22 174.1 12.9 184 2-203 25-217 (606)
55 4ay9_X Follicle-stimulating ho 99.7 3E-17 1E-21 159.6 14.9 200 1-216 22-229 (350)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.7E-16 6E-21 163.8 21.4 99 2-101 45-158 (562)
57 2z63_A TOLL-like receptor 4, v 99.7 3.7E-17 1.3E-21 168.6 16.3 183 10-203 283-483 (570)
58 1h6u_A Internalin H; cell adhe 99.7 4E-17 1.4E-21 155.9 14.7 176 2-206 55-234 (308)
59 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 146.4 12.8 147 10-171 45-192 (197)
60 4glp_A Monocyte differentiatio 99.7 2.6E-17 8.7E-22 157.3 13.2 174 10-203 92-285 (310)
61 2z81_A CD282 antigen, TOLL-lik 99.7 9.2E-18 3.1E-22 172.5 10.6 160 2-171 19-183 (549)
62 3oja_A Leucine-rich immune mol 99.7 3E-17 1E-21 166.8 13.7 182 6-203 54-250 (487)
63 1h6t_A Internalin B; cell adhe 99.7 3.5E-17 1.2E-21 155.1 13.2 169 10-207 47-218 (291)
64 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-17 1.1E-21 157.2 13.0 178 10-203 59-250 (317)
65 1ziw_A TOLL-like receptor 3; i 99.7 5.1E-17 1.7E-21 171.5 15.6 164 2-176 18-186 (680)
66 3j0a_A TOLL-like receptor 5; m 99.7 5.2E-17 1.8E-21 175.7 15.8 184 2-203 18-217 (844)
67 2z7x_B TOLL-like receptor 1, v 99.7 7.2E-17 2.5E-21 164.9 15.8 174 10-202 277-480 (520)
68 3bz5_A Internalin-J, INLJ; leu 99.7 2.6E-16 9E-21 158.5 19.3 191 10-221 43-244 (457)
69 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-16 4.9E-21 168.0 18.0 161 11-171 383-571 (680)
70 1o6v_A Internalin A; bacterial 99.7 1.1E-16 3.8E-21 161.5 16.3 142 10-171 178-320 (466)
71 2o6s_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 143.9 14.2 150 10-171 8-159 (208)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.9E-17 2.7E-21 166.4 15.1 135 53-207 350-491 (562)
73 2z63_A TOLL-like receptor 4, v 99.7 2.4E-17 8.2E-22 170.0 10.9 179 10-207 326-512 (570)
74 3j0a_A TOLL-like receptor 5; m 99.7 1.7E-16 5.8E-21 171.7 17.6 83 114-203 267-351 (844)
75 4fmz_A Internalin; leucine ric 99.7 2.8E-16 9.7E-21 152.0 17.0 185 2-203 58-256 (347)
76 3e6j_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 144.3 15.0 151 10-203 20-172 (229)
77 2xwt_C Thyrotropin receptor; s 99.7 4E-16 1.4E-20 143.1 16.8 179 12-212 14-203 (239)
78 2v9t_B SLIT homolog 2 protein 99.7 2.6E-16 9E-21 142.8 15.0 150 10-171 12-163 (220)
79 1o6v_A Internalin A; bacterial 99.7 3.7E-16 1.3E-20 157.7 17.3 161 3-171 61-254 (466)
80 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.8E-21 156.3 12.9 174 10-203 19-202 (361)
81 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.8E-21 142.9 14.5 150 10-171 12-164 (220)
82 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 143.2 12.5 166 2-190 21-188 (208)
83 4g8a_A TOLL-like receptor 4; l 99.7 8.2E-17 2.8E-21 167.6 12.4 182 2-201 45-235 (635)
84 2z7x_B TOLL-like receptor 1, v 99.7 2.1E-16 7.2E-21 161.4 14.6 190 6-206 216-438 (520)
85 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.4E-21 164.7 13.7 169 10-207 44-215 (605)
86 3cvr_A Invasion plasmid antige 99.7 8.4E-16 2.9E-20 158.4 16.7 168 10-203 60-243 (571)
87 4ezg_A Putative uncharacterize 99.7 2.3E-16 7.8E-21 140.6 10.8 152 28-203 40-194 (197)
88 4glp_A Monocyte differentiatio 99.7 4.7E-16 1.6E-20 148.5 13.4 174 10-203 118-307 (310)
89 2z81_A CD282 antigen, TOLL-lik 99.7 3.5E-16 1.2E-20 160.7 12.8 171 12-201 8-183 (549)
90 2v9t_B SLIT homolog 2 protein 99.6 1.2E-15 4E-20 138.6 13.8 139 2-150 25-165 (220)
91 2xot_A Amphoterin-induced prot 99.6 5.1E-16 1.7E-20 151.6 12.1 160 2-171 32-200 (361)
92 2ast_B S-phase kinase-associat 99.6 3.2E-17 1.1E-21 157.9 3.3 175 10-200 94-282 (336)
93 1jl5_A Outer protein YOPM; leu 99.6 2.5E-16 8.6E-21 158.5 9.8 184 4-205 5-231 (454)
94 4g8a_A TOLL-like receptor 4; l 99.6 1.3E-15 4.3E-20 158.6 14.9 177 12-207 34-219 (635)
95 1h6t_A Internalin B; cell adhe 99.6 1.6E-15 5.5E-20 143.6 14.2 150 2-171 60-211 (291)
96 3g06_A SSPH2 (leucine-rich rep 99.6 3.5E-15 1.2E-19 155.5 17.4 181 2-206 54-278 (622)
97 1dce_A Protein (RAB geranylger 99.6 6.7E-18 2.3E-22 174.4 -4.0 182 10-207 350-551 (567)
98 2v70_A SLIT-2, SLIT homolog 2 99.6 2.4E-15 8.1E-20 136.5 13.3 139 2-150 25-166 (220)
99 3cvr_A Invasion plasmid antige 99.6 5E-15 1.7E-19 152.6 17.2 150 33-207 60-225 (571)
100 1jl5_A Outer protein YOPM; leu 99.6 2.4E-14 8.2E-19 144.1 20.5 147 10-171 132-288 (454)
101 3g06_A SSPH2 (leucine-rich rep 99.6 1.5E-14 5E-19 150.8 19.1 174 10-206 41-258 (622)
102 2ast_B S-phase kinase-associat 99.6 6E-17 2.1E-21 155.9 1.0 176 10-201 71-258 (336)
103 1xeu_A Internalin C; cellular 99.6 2.2E-15 7.6E-20 140.5 11.6 167 10-206 20-189 (263)
104 1m9s_A Internalin B; cell inva 99.6 6.2E-15 2.1E-19 153.3 15.7 150 2-171 57-208 (605)
105 2ca6_A RAN GTPase-activating p 99.6 1.6E-16 5.6E-21 156.3 2.3 191 10-203 33-287 (386)
106 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 132.9 13.9 136 2-171 33-170 (229)
107 2ell_A Acidic leucine-rich nuc 99.6 6.8E-15 2.3E-19 127.3 10.9 127 10-171 25-158 (168)
108 4ay9_X Follicle-stimulating ho 99.6 2.5E-14 8.4E-19 138.9 15.6 185 10-214 10-203 (350)
109 4b8c_D Glucose-repressible alc 99.6 9.9E-16 3.4E-20 162.8 4.2 153 10-176 174-331 (727)
110 2ell_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 125.6 9.9 135 29-206 21-164 (168)
111 2ca6_A RAN GTPase-activating p 99.5 5.9E-16 2E-20 152.3 0.0 187 10-202 10-228 (386)
112 2je0_A Acidic leucine-rich nuc 99.5 8.5E-15 2.9E-19 124.1 6.6 68 101-168 76-148 (149)
113 2wfh_A SLIT homolog 2 protein 99.5 9E-14 3.1E-18 123.4 12.5 126 10-171 11-137 (193)
114 1w8a_A SLIT protein; signaling 99.5 6E-14 2.1E-18 124.4 11.1 127 10-171 9-137 (192)
115 1a9n_A U2A', U2A'; complex (nu 99.5 3.2E-14 1.1E-18 124.2 7.2 129 5-171 14-151 (176)
116 3goz_A Leucine-rich repeat-con 99.5 1.6E-15 5.6E-20 148.0 -2.1 64 4-67 15-91 (362)
117 2je0_A Acidic leucine-rich nuc 99.5 5.1E-14 1.8E-18 119.2 7.5 127 30-199 15-149 (149)
118 2o6r_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 116.9 13.4 127 10-171 8-135 (177)
119 1xeu_A Internalin C; cellular 99.4 9.3E-14 3.2E-18 129.5 7.4 145 30-203 17-163 (263)
120 1dce_A Protein (RAB geranylger 99.4 2.1E-13 7E-18 140.8 9.5 101 33-171 442-544 (567)
121 2wfh_A SLIT homolog 2 protein 99.4 6.8E-13 2.3E-17 117.8 11.6 115 2-149 24-138 (193)
122 1w8a_A SLIT protein; signaling 99.4 1.5E-12 5.1E-17 115.3 13.1 126 35-203 11-139 (192)
123 4b8c_D Glucose-repressible alc 99.4 4.5E-14 1.5E-18 150.1 2.7 130 13-156 205-336 (727)
124 1z7x_W Ribonuclease inhibitor; 99.4 3.6E-14 1.2E-18 142.3 1.2 191 10-203 57-297 (461)
125 1z7x_W Ribonuclease inhibitor; 99.4 1.9E-14 6.4E-19 144.4 -2.6 187 10-203 171-411 (461)
126 3goz_A Leucine-rich repeat-con 99.4 5.5E-14 1.9E-18 137.1 0.5 188 13-203 2-238 (362)
127 1ds9_A Outer arm dynein; leuci 99.4 1.7E-14 5.7E-19 128.5 -4.0 124 10-171 24-151 (198)
128 1a9n_A U2A', U2A'; complex (nu 99.4 9.4E-13 3.2E-17 114.8 7.2 131 28-203 15-153 (176)
129 2o6r_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 107.7 11.9 117 2-151 21-138 (177)
130 3g39_A Variable lymphocyte rec 99.3 2E-11 6.8E-16 105.9 11.0 106 10-150 10-115 (170)
131 2r9u_A Variable lymphocyte rec 99.3 2.3E-11 7.8E-16 106.0 11.3 109 10-153 13-121 (174)
132 3ogk_B Coronatine-insensitive 99.2 1.7E-12 5.7E-17 134.4 1.2 55 10-64 271-326 (592)
133 1ds9_A Outer arm dynein; leuci 99.2 1.5E-13 5.2E-18 122.3 -8.4 120 10-166 49-180 (198)
134 3sb4_A Hypothetical leucine ri 99.1 1.2E-10 4.1E-15 111.8 10.0 189 10-213 50-321 (329)
135 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.2E-15 98.7 11.2 66 106-171 47-113 (170)
136 2r9u_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 98.5 11.6 59 113-171 33-92 (174)
137 2ifg_A High affinity nerve gro 99.0 7.8E-10 2.7E-14 106.7 9.8 104 12-150 11-116 (347)
138 3ogk_B Coronatine-insensitive 99.0 6.7E-11 2.3E-15 122.3 1.8 161 10-171 113-304 (592)
139 2p1m_B Transport inhibitor res 99.0 5E-11 1.7E-15 123.2 -0.9 187 10-203 290-519 (594)
140 3sb4_A Hypothetical leucine ri 98.9 1.9E-09 6.6E-14 103.3 9.6 178 9-197 100-328 (329)
141 2ifg_A High affinity nerve gro 98.9 2.4E-09 8.3E-14 103.2 10.4 101 60-171 12-114 (347)
142 2p1m_B Transport inhibitor res 98.9 4.8E-11 1.7E-15 123.3 -2.1 58 10-67 106-167 (594)
143 3un9_A NLR family member X1; l 98.9 8.2E-11 2.8E-15 115.1 -3.7 60 112-171 154-222 (372)
144 3un9_A NLR family member X1; l 98.8 1.2E-10 4.2E-15 113.9 -3.2 159 10-175 73-253 (372)
145 4fdw_A Leucine rich hypothetic 98.8 5.8E-08 2E-12 95.7 14.3 171 10-207 158-340 (401)
146 2ra8_A Uncharacterized protein 98.6 5.2E-08 1.8E-12 94.7 6.0 178 10-203 108-320 (362)
147 4fdw_A Leucine rich hypothetic 98.5 9.1E-06 3.1E-10 79.9 19.1 180 10-211 136-321 (401)
148 2ra8_A Uncharacterized protein 98.4 9.3E-08 3.2E-12 92.9 3.3 153 10-176 140-322 (362)
149 1io0_A Tropomodulin; LRR prote 98.0 1.6E-06 5.4E-11 75.8 2.0 63 109-171 89-162 (185)
150 3e4g_A ATP synthase subunit S, 97.8 9.8E-06 3.4E-10 69.9 3.5 35 92-126 117-152 (176)
151 3e4g_A ATP synthase subunit S, 97.8 1E-05 3.5E-10 69.8 3.6 88 32-151 61-154 (176)
152 1io0_A Tropomodulin; LRR prote 97.8 4.7E-06 1.6E-10 72.8 0.9 96 105-203 57-164 (185)
153 3rw6_A Nuclear RNA export fact 97.7 2.3E-05 8E-10 72.4 4.2 60 111-171 168-231 (267)
154 3rw6_A Nuclear RNA export fact 97.5 5.2E-05 1.8E-09 70.1 3.6 79 88-167 168-258 (267)
155 4h09_A Hypothetical leucine ri 96.6 0.021 7.2E-07 54.9 12.6 147 30-199 192-342 (379)
156 4fs7_A Uncharacterized protein 96.5 0.02 6.8E-07 55.5 11.9 143 10-170 231-376 (394)
157 4fs7_A Uncharacterized protein 96.4 0.028 9.6E-07 54.4 12.3 163 10-199 209-375 (394)
158 4gt6_A Cell surface protein; l 96.2 0.014 4.9E-07 56.5 8.9 127 50-201 259-389 (394)
159 3rfe_A Platelet glycoprotein I 96.2 0.0053 1.8E-07 49.9 4.8 55 12-68 11-67 (130)
160 4gt6_A Cell surface protein; l 95.7 0.032 1.1E-06 54.0 9.2 135 21-171 253-389 (394)
161 3rfe_A Platelet glycoprotein I 95.5 0.011 3.6E-07 48.1 3.9 44 2-45 24-68 (130)
162 4h09_A Hypothetical leucine ri 95.3 0.1 3.4E-06 50.0 11.1 129 27-170 212-343 (379)
163 1pgv_A TMD-1, tropomodulin TMD 95.3 0.009 3.1E-07 52.2 3.1 13 113-125 98-110 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.0 0.016 5.6E-07 50.6 1.5 95 106-202 63-169 (197)
165 2lz0_A Uncharacterized protein 33.9 40 0.0014 25.2 3.8 47 18-65 5-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.2e-22 Score=196.07 Aligned_cols=215 Identities=17% Similarity=0.231 Sum_probs=171.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+++.|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|. +..+| ..+..+
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp----------~~l~~l 149 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALP----------ASIASL 149 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCC----------GGGGGC
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCc----------HHHhcC
Confidence 789999999999999999999999999999998766 889889999999999999964 44777 578889
Q ss_pred cc-ceEEcCCCCCCCCCcccccC---------CCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCM---------FKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~---------l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
++ +.|++++|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..++.+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99 99999999999999987654 999999999999876 88888999999999999999999999889999
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--cCcCccccccccccccccCCcccCCceeEecCC
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--LDPNELSEIVKDGWMKQSFDGNIGITKSMYFPG 236 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--lp~~~L~~l~~~~~~~n~~~~~~~~~~~~~~~g 236 (417)
++|+.|+|++|.... . +|..+..+ .|+.|++++|.+. +|.. +..+..+..+. + ..+---
T Consensus 229 ~~L~~L~Ls~n~~~~-~------~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~--L--------~~n~~~ 290 (328)
T 4fcg_A 229 PKLEELDLRGCTALR-N------YPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLD--L--------RGCVNL 290 (328)
T ss_dssp TTCCEEECTTCTTCC-B------CCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEE--C--------TTCTTC
T ss_pred CCCCEEECcCCcchh-h------hHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEe--C--------CCCCch
Confidence 999999999998444 5 88888888 9999999999855 6654 33333221110 0 001112
Q ss_pred CCCCCCcccCCCCceEEEEeC
Q 014835 237 KEIPKWFRYQSMGSSVNLKKR 257 (417)
Q Consensus 237 ~~iP~w~~~~~~g~~~~i~l~ 257 (417)
..+|+|+.....- ..+.+|
T Consensus 291 ~~iP~~l~~L~~L--~~l~l~ 309 (328)
T 4fcg_A 291 SRLPSLIAQLPAN--CIILVP 309 (328)
T ss_dssp CCCCGGGGGSCTT--CEEECC
T ss_pred hhccHHHhhccCc--eEEeCC
Confidence 4688888776443 334454
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.8e-22 Score=194.89 Aligned_cols=199 Identities=24% Similarity=0.309 Sum_probs=167.5
Q ss_pred CCCCccc-C-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCC-cc
Q 014835 2 NFPSVTS-C-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIP-SC 78 (417)
Q Consensus 2 ~lP~~~~-~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~-~l 78 (417)
.+|+.+. . +|++|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|+.++.+|.-- ..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 4676444 4 999999999999999999999999999999998766 889889999999999999999998888411 01
Q ss_pred ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcchhc
Q 014835 79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVPESL 156 (417)
Q Consensus 79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l 156 (417)
.+. ..+..+++ +.|++++|.+. .+|..+..+++|++|++++|.+.+ +|..++.+++|++|++++|.+ +.+|..+
T Consensus 174 ~~~--~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 174 DAS--GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp C-C--CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred cch--hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 111 23556899 99999999766 899999999999999999999774 777899999999999999887 7889999
Q ss_pred cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--cCcCcccccc
Q 014835 157 GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--LDPNELSEIV 213 (417)
Q Consensus 157 ~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--lp~~~L~~l~ 213 (417)
+.+++|+.|+|++|..+. . +|..+..+ .|+.|++++|.+. +|.. +..+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~-~------~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~ 301 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLL-T------LPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLP 301 (328)
T ss_dssp TCCCCCCEEECTTCTTCC-B------CCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSC
T ss_pred cCCCCCCEEECCCCCchh-h------cchhhhcCCCCCEEeCCCCCchhhccHH-Hhhcc
Confidence 999999999999998444 6 88889889 9999999999955 7764 44444
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=7.9e-22 Score=189.14 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=130.2
Q ss_pred CCCcccC--cccEEEeec-CCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-----
Q 014835 3 FPSVTSC--HVYTLELVK-VGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----- 73 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~-n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----- 73 (417)
+|+.+.. +|++|+|++ |.+. .+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+|++|...+.+|
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 5554444 899999995 8887 788889999999999999988888888888899999999999875443443
Q ss_pred --CCCccccCCC-------ccccccc-c-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEE
Q 014835 74 --EIPSCNIDGG-------IGIERLA-S-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETL 142 (417)
Q Consensus 74 --~l~~l~l~g~-------~~l~~l~-~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 142 (417)
.+..++++++ ..+..++ . +.|++++|.+.+.+|..+..++ |+.|++++|.+.+..|..++.+++|+.|
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 3333444443 2344554 4 6666666655555666665555 6666666666665666666666666666
Q ss_pred EeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 143 IVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 143 ~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
++++|.+...+..+..+++|++|+|++|. +.+. +|..+..+ .|+.|++++|.++
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IYGT------LPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSC-CEEC------CCGGGGGCTTCCEEECCSSEEE
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCc-ccCc------CChHHhcCcCCCEEECcCCccc
Confidence 66666665444446666666666666666 4434 66666666 7777777777765
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.4e-21 Score=209.44 Aligned_cols=197 Identities=19% Similarity=0.238 Sum_probs=127.2
Q ss_pred CCCcccC--cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC------
Q 014835 3 FPSVTSC--HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT------ 73 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp------ 73 (417)
+|..++. +|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+|++|...+.+|
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 4554443 8888888888887 778888888888888888888888888888888888888888877655555
Q ss_pred -CCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcccc-----------------------------------
Q 014835 74 -EIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPSSL----------------------------------- 109 (417)
Q Consensus 74 -~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l----------------------------------- 109 (417)
.+..++++++ ..+..+++ +.|++++|.+.+.+|..+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 2233344433 34455555 566666555544444322
Q ss_pred -----------------------------------cCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcc
Q 014835 110 -----------------------------------CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVP 153 (417)
Q Consensus 110 -----------------------------------~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp 153 (417)
..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+ +.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 2234556666666666666666666666666666666666 3566
Q ss_pred hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--cCc
Q 014835 154 ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--LDP 206 (417)
Q Consensus 154 ~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--lp~ 206 (417)
..++.+++|+.|+|++|+ +++. +|..+..+ .|+.|++++|+|+ +|.
T Consensus 674 ~~l~~L~~L~~LdLs~N~-l~g~------ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNK-LDGR------IPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGGCTTCCEEECCSSC-CEEC------CCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred hHHhCCCCCCEEECCCCc-ccCc------CChHHhCCCCCCEEECcCCcccccCCC
Confidence 666666666666666666 4444 66666666 6666666666665 554
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=5.3e-21 Score=180.56 Aligned_cols=193 Identities=19% Similarity=0.215 Sum_probs=158.5
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.-...+|++|+|++|.++.+|. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|..++.++.
T Consensus 25 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~------ 98 (285)
T 1ozn_A 25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP------ 98 (285)
T ss_dssp SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT------
T ss_pred cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH------
Confidence 3554333389999999999998875 488999999999999887777688899999999999999766766643
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ 158 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 158 (417)
..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..
T Consensus 99 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 99 ---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp ---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred ---HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 56778888 999999998887778888889999999999998877666778899999999999999988775 5888
Q ss_pred CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccc
Q 014835 159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELS 210 (417)
Q Consensus 159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~ 210 (417)
+++|+.|+|++|. +.+. .|..+..+ .|+.|++++|.++ +|+..+.
T Consensus 176 l~~L~~L~l~~n~-l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 176 LHSLDRLLLHQNR-VAHV------HPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp CTTCCEEECCSSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ccccCEEECCCCc-cccc------CHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 9999999999998 5544 57777788 9999999999987 6654333
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.1e-21 Score=184.94 Aligned_cols=176 Identities=19% Similarity=0.268 Sum_probs=157.0
Q ss_pred cccEEEeecCCCc---ccCccccCCcCcceeeccc-cccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835 10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVD-CSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85 (417)
Q Consensus 10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~ 85 (417)
+++.|+|+++.++ .+|..++.+++|++|+|++ |.+.+.+|..++++++|++|+|++|...+.+| ..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------DF 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----------GG
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC----------HH
Confidence 6999999999998 6999999999999999995 88888999999999999999999976655676 57
Q ss_pred cccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCC-CCCEEEeeccCCC-CcchhccCCCCC
Q 014835 86 IERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLE-ALETLIVDRTAMR-EVPESLGQLSSL 162 (417)
Q Consensus 86 l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~l~~L~~L 162 (417)
+..+++ ++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.++ +|+.|++++|.+. .+|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 888999 9999999988888999999999999999999998889999999988 9999999999994 7888888887 9
Q ss_pred cEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 163 KILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 163 ~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
+.|+|++|. +.+. +|..+..+ .|+.|++++|.++
T Consensus 200 ~~L~Ls~N~-l~~~------~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 200 AFVDLSRNM-LEGD------ASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp SEEECCSSE-EEEC------CGGGCCTTSCCSEEECCSSEEC
T ss_pred cEEECcCCc-ccCc------CCHHHhcCCCCCEEECCCCcee
Confidence 999999998 5545 67677778 9999999999987
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=7.4e-21 Score=203.87 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=90.1
Q ss_pred CCCccc-C-cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-----
Q 014835 3 FPSVTS-C-HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE----- 74 (417)
Q Consensus 3 lP~~~~-~-~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~----- 74 (417)
+|..+. . +|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..+..+++|++|++++|...+.+|.
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 455444 4 9999999999998 7888899999999999999999999999999999999999999876656652
Q ss_pred --CCccccCCC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC
Q 014835 75 --IPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP 130 (417)
Q Consensus 75 --l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp 130 (417)
+..++++++ ..++.+++ +.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 223333333 23444555 555555555555555555555555555555555444433
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.2e-19 Score=170.13 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=127.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+++.++++++.++.+|..+. ++|+.|+|++|.+.+..+..+.++++|++|+|++| .++.+|. ..+..+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~---------~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPA---------GIFKEL 84 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCT---------TTTSSC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeCh---------hhhcCC
Confidence 46778888888888877554 57888888887666555556777888888888874 3445543 345667
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L 167 (417)
++ +.|++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|+.|+|
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 77 7888888766655555667778888888888877766666677788888888888888776653 677788888888
Q ss_pred cCCCCChhhhhcccCCCC-ccccC-CcceeecCCCccc-cCcCcccc
Q 014835 168 SNIKRLPEYLQLHLQLPE-NGLEG-IPEYLRRSPRKLT-LDPNELSE 211 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~-~l~~l-~L~~L~l~~n~L~-lp~~~L~~ 211 (417)
++|. +++ +|. .+..+ .|+.|++++|.++ +|+..+..
T Consensus 165 ~~n~-l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 165 YNNQ-LKR-------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CSSC-CSC-------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCCc-CcE-------eChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 8777 442 443 35556 7888888888777 66554433
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.8e-20 Score=196.70 Aligned_cols=180 Identities=20% Similarity=0.288 Sum_probs=154.8
Q ss_pred cccEEEeecCCCc-ccCccccCCcCcceeecccccc--------------------------------------------
Q 014835 10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSM-------------------------------------------- 44 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~-------------------------------------------- 44 (417)
+++.|+|++++++ .+|+++++|++|++|+|++|.+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 7899999999998 8999999999999999998743
Q ss_pred ---------------------------------CccccccCCCCCCCcEEeeecCCCCCc-----------------CCC
Q 014835 45 ---------------------------------LESISSSIFKLKSLQSIEISNCPIFER-----------------FTE 74 (417)
Q Consensus 45 ---------------------------------~~~lp~~l~~L~~L~~L~Ls~c~~l~~-----------------lp~ 74 (417)
++.+|..++++++|++|+|++|..-+. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip- 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT- 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-
Confidence 112788899999999999999764442 66
Q ss_pred CCccccCCCcccc--cccc-ceEEcCCCCCCCCCcccccCCCCCcEEeccccc-CCc-cCCcccCCC------CCCCEEE
Q 014835 75 IPSCNIDGGIGIE--RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ-YFM-ILPDELGNL------EALETLI 143 (417)
Q Consensus 75 l~~l~l~g~~~l~--~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~-~~~-~lp~~l~~l------~~L~~L~ 143 (417)
..++ ++++ ++|+|++|.+.+.+|..++.+++|++|++++|. +.+ .+|..++.+ ++|++|+
T Consensus 241 ---------~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 241 ---------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp ---------SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred ---------hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 5777 8999 999999999999999999999999999999998 777 788888776 8999999
Q ss_pred eeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 144 VDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 144 L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
+++|.++.+|. .++.+++|+.|++++|. +.+. +| .+..+ .|+.|++++|.++ +|..
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~------ip-~~~~l~~L~~L~L~~N~l~~lp~~ 371 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGK------LP-AFGSEIKLASLNLAYNQITEIPAN 371 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEE------CC-CCEEEEEESEEECCSSEEEECCTT
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccc------hh-hhCCCCCCCEEECCCCccccccHh
Confidence 99999999998 89999999999999998 5555 88 77777 8999999999887 7664
No 10
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6.8e-20 Score=168.46 Aligned_cols=194 Identities=21% Similarity=0.213 Sum_probs=149.1
Q ss_pred CCCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835 1 MNFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSC 78 (417)
Q Consensus 1 ~~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l 78 (417)
+++|. +..+|++|+|++|+++.+|. .++.+++|++|++++|..++.+| ..+.++++|++|++++|+.++.+|.
T Consensus 24 ~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~---- 98 (239)
T 2xwt_C 24 QRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP---- 98 (239)
T ss_dssp SSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT----
T ss_pred cccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH----
Confidence 35677 44489999999999998887 58889999999999986455555 4678899999999998666666664
Q ss_pred ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCc---EEecccc-cCCccCCcccCCCCCCC-EEEeeccCCCCc
Q 014835 79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLT---SLEIIDC-QYFMILPDELGNLEALE-TLIVDRTAMREV 152 (417)
Q Consensus 79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~---~L~L~~n-~~~~~lp~~l~~l~~L~-~L~L~~n~l~~l 152 (417)
..+..+++ +.|++++|.+.+ +|. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|.++.+
T Consensus 99 -----~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 99 -----DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp -----TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred -----HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 46778888 999999987654 776 77788887 9999998 66665556688899999 999999999888
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCCCC-ccccC--CcceeecCCCccc-cCcCcccccc
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE-NGLEG--IPEYLRRSPRKLT-LDPNELSEIV 213 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~-~l~~l--~L~~L~l~~n~L~-lp~~~L~~l~ 213 (417)
|......++|+.|+|++|+.++ . +|. .+..+ .|+.|++++|.++ +|+..+..+.
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~-~------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLT-V------IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCC-E------ECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred CHhhcCCCCCCEEEcCCCCCcc-c------CCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence 8765555889999999985354 2 443 34444 7889999999887 7776555554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.9e-20 Score=196.54 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=126.9
Q ss_pred CCCcccC--cccEEEeecCCCcc------------------cCcccc--CCcCcceeeccccccCccccccCCCCCCCcE
Q 014835 3 FPSVTSC--HVYTLELVKVGIKE------------------LPSSIE--CLSNLKKLYIVDCSMLESISSSIFKLKSLQS 60 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~n~l~~------------------lp~~i~--~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~ 60 (417)
+|+.++. +|++|+|++|.++. +|..++ ++++|++|+|++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 5665544 99999999999997 999999 9999999999999999999999999999999
Q ss_pred EeeecCCCCC--cCC-------------CCCccccCCC------c--ccccccc-ceEEcCCCCCCCCCcccccCCCCCc
Q 014835 61 IEISNCPIFE--RFT-------------EIPSCNIDGG------I--GIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLT 116 (417)
Q Consensus 61 L~Ls~c~~l~--~lp-------------~l~~l~l~g~------~--~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~ 116 (417)
|++++|..+. .+| .+..++++++ . .+..+++ +.|++++|.+.+.+| .+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999987343 344 3333444433 1 3445555 555555555544555 555555555
Q ss_pred EEecccccCCccCCcccCCCCC-CCEEEeeccCCCCcchhccCCC--CCcEEEccCCCCChhhhhcccCCCCccc-----
Q 014835 117 SLEIIDCQYFMILPDELGNLEA-LETLIVDRTAMREVPESLGQLS--SLKILVLSNIKRLPEYLQLHLQLPENGL----- 188 (417)
Q Consensus 117 ~L~L~~n~~~~~lp~~l~~l~~-L~~L~L~~n~l~~lp~~l~~L~--~L~~L~L~~n~~l~~~l~~~l~lp~~l~----- 188 (417)
+|++++|.+. .+|..++.+++ |+.|++++|.++.+|..+..++ +|+.|++++|. +.+. +|..+.
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~------~p~~l~~~~~~ 428 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSV------DGKNFDPLDPT 428 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTT------TTCSSCTTCSS
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCc------chhhhcccccc
Confidence 5555555544 45555555555 6666666666655555554433 56666666555 3333 444443
Q ss_pred --cC-CcceeecCCCccc-cCc
Q 014835 189 --EG-IPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 189 --~l-~L~~L~l~~n~L~-lp~ 206 (417)
.+ .|+.|++++|.++ +|.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCT
T ss_pred cccCCCCCEEECcCCccCcCCH
Confidence 44 5666666666655 444
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=6.5e-20 Score=174.76 Aligned_cols=184 Identities=21% Similarity=0.223 Sum_probs=112.1
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCc--cccccCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLE--SISSSIFKLKSLQSIEISNCPIFERFTEIPSC 78 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~--~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l 78 (417)
++|.-...+|++|+|++|.++.+|.. ++.+++|++|+|++|.+.. ..|..+..+++|++|++++|. +..+|
T Consensus 21 ~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~----- 94 (306)
T 2z66_A 21 SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS----- 94 (306)
T ss_dssp SCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE-----
T ss_pred cCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccCh-----
Confidence 45654434899999999999999886 6889999999999977653 235566678999999999864 33333
Q ss_pred ccCCCcccccccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC--cch
Q 014835 79 NIDGGIGIERLAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE--VPE 154 (417)
Q Consensus 79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~--lp~ 154 (417)
..+..+++ +.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. +|.
T Consensus 95 -----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 95 -----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp -----EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred -----hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 23445555 555555554433322 345555555555555555555555555555555555555555532 455
Q ss_pred hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 155 SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 155 ~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.+..+++|+.|+|++|. +++. .|..+..+ .|+.|++++|.++
T Consensus 170 ~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQ-LEQL------SPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CCTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECTTSCCS
T ss_pred HHhhCcCCCEEECCCCC-cCCc------CHHHhcCCCCCCEEECCCCccC
Confidence 55555555555555555 3322 34444444 5555555555554
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=5e-19 Score=170.52 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=138.9
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.....+|++|+|++|.++.+|. .++.+++|++|+|++|.+.+..|..+.++++|++|++++| .++.+|.
T Consensus 45 ~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~------ 117 (330)
T 1xku_A 45 KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE------ 117 (330)
T ss_dssp SCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS------
T ss_pred ccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh------
Confidence 3454333478888888888887776 5888888888888888777776888888888888888885 4555552
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCCCCcchhcc
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAMREVPESLG 157 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 157 (417)
.+. ++ +.|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++.+|..+.
T Consensus 118 ----~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 191 (330)
T 1xku_A 118 ----KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191 (330)
T ss_dssp ----SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC
T ss_pred ----hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc
Confidence 222 46 788888887776666677888888888888887643 566677888888888888888887776554
Q ss_pred CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccccc
Q 014835 158 QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEI 212 (417)
Q Consensus 158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l 212 (417)
++|+.|++++|. +++. .|..+..+ .|+.|++++|.++ +++..+..+
T Consensus 192 --~~L~~L~l~~n~-l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 192 --PSLTELHLDGNK-ITKV------DAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp --TTCSEEECTTSC-CCEE------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred --ccCCEEECCCCc-CCcc------CHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 788888888887 5533 45566677 8888888888877 655444433
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=179.74 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT------- 73 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp------- 73 (417)
++|..+..+++.|+|++|.++.++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++| .++.+|
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 135 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYL 135 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSC
T ss_pred cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhcc
Confidence 4666555589999999999997764 5899999999999998877777788999999999999996 344443
Q ss_pred -CCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCcccCCCCCCCEEE
Q 014835 74 -EIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLI 143 (417)
Q Consensus 74 -~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 143 (417)
.+..|+++++ ..+..+++ +.|++++|..++.++. .+..+++|++|++++|.+. .+| .+..+++|+.|+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEE
Confidence 3334445444 23455556 6666666555554443 4556666666666666543 334 355666666666
Q ss_pred eeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcc
Q 014835 144 VDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNEL 209 (417)
Q Consensus 144 L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L 209 (417)
|++|.+..+ |..+..+++|+.|+|++|. +++. .+..+..+ +|+.|++++|.|+ +|+..+
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVI------ERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEE------CTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCCccCccChhhhccCccCCEEECCCCc-eeEE------ChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 666666544 4456666666666666666 4423 34445555 6777777777766 555433
No 15
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.3e-19 Score=170.05 Aligned_cols=193 Identities=18% Similarity=0.221 Sum_probs=146.5
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|..+..+|++|+|++|.++.++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++|.. ..++.
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~------ 93 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLAL------ 93 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECT------
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccCh------
Confidence 4566444489999999999998876 688999999999999877766666788999999999999643 33332
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcc-hhcc
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVP-ESLG 157 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 157 (417)
..+..+++ +.|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.++.++ ..+.
T Consensus 94 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 94 ---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ---TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ---hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 46777888 888888887766666578888888888888888766 36888888888888888888887665 3555
Q ss_pred CCCCCc----EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccccc
Q 014835 158 QLSSLK----ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEI 212 (417)
Q Consensus 158 ~L~~L~----~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l 212 (417)
.+++|+ .|++++|. +. . ++...... +|+.|++++|.++ +|+..+..+
T Consensus 171 ~l~~L~~l~l~L~ls~n~-l~-~------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNP-MN-F------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp HHHTCTTCCEEEECCSSC-CC-E------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhccccceeeecCCCc-cc-c------cCccccCCCcccEEECCCCceeecCHhHhccc
Confidence 555555 78888888 44 2 55556666 8888888888877 666544333
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.6e-19 Score=179.80 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=58.0
Q ss_pred CCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-C
Q 014835 114 SLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-I 191 (417)
Q Consensus 114 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~ 191 (417)
+|+.|++++|.+.+..|..++.+++|+.|++++|.+..+ |..+..+++|++|+|++|. +.+. .|..+..+ .
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~~~~l~~ 348 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSI------DSRMFENLDK 348 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEE------CGGGGTTCTT
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCc------ChhHhcCccc
Confidence 455555555555556667777777777777777777554 4467777777777777776 4423 34455556 7
Q ss_pred cceeecCCCccc-cCcCccc
Q 014835 192 PEYLRRSPRKLT-LDPNELS 210 (417)
Q Consensus 192 L~~L~l~~n~L~-lp~~~L~ 210 (417)
|+.|++++|.++ +++..+.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp CCEEECCSSCCCEECTTTTT
T ss_pred CCEEECCCCcccccChhhcc
Confidence 777777777766 4443333
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=8.3e-19 Score=164.32 Aligned_cols=184 Identities=21% Similarity=0.251 Sum_probs=154.4
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|..+..+|++|+|++|.++.+|. .+..+++|++|+|++|.+....+..+.++++|++|++++| .+..+|.
T Consensus 30 ~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~------ 102 (270)
T 2o6q_A 30 AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPI------ 102 (270)
T ss_dssp SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCT------
T ss_pred ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCH------
Confidence 4565444489999999999998887 5999999999999998766544455688999999999996 4555553
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ 158 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 158 (417)
..+..+++ +.|++++|.+....|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..
T Consensus 103 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 103 ---GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp ---TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ---hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 46778899 999999998887777788999999999999999877666678999999999999999988875 5889
Q ss_pred CCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835 159 LSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~ 203 (417)
+++|+.|+|++|. ++ . +|.. +..+ .|+.|++++|++.
T Consensus 180 l~~L~~L~L~~N~-l~-~------~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 180 LTELKTLKLDNNQ-LK-R------VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSSC-CS-C------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCEEECCCCc-CC-c------CCHHHhccccCCCEEEecCCCee
Confidence 9999999999998 55 2 5544 5567 9999999999976
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=2.6e-19 Score=168.91 Aligned_cols=176 Identities=20% Similarity=0.235 Sum_probs=150.2
Q ss_pred cccEEEeecCCCccc-CccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835 10 HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE 87 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~ 87 (417)
+|++|+|++|.++.+ |..++.+++|++|+|++|..++.+ |..+..+++|++|++++|......| ..+.
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~ 126 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------GLFR 126 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------TTTT
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH----------hHhh
Confidence 999999999999977 567999999999999998745555 7789999999999999975433323 5678
Q ss_pred cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEE
Q 014835 88 RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKIL 165 (417)
Q Consensus 88 ~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L 165 (417)
.+++ +.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+ |..+..+++|+.|
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 8999 9999999988766667788999999999999998876667799999999999999999765 7789999999999
Q ss_pred EccCCCCChhhhhcccCCC-CccccC-CcceeecCCCccc
Q 014835 166 VLSNIKRLPEYLQLHLQLP-ENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 166 ~L~~n~~l~~~l~~~l~lp-~~l~~l-~L~~L~l~~n~L~ 203 (417)
++++|. +++ +| ..+..+ .|+.|++++|++.
T Consensus 207 ~l~~n~-l~~-------~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 207 YLFANN-LSA-------LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSC-CSC-------CCHHHHTTCTTCCEEECCSSCEE
T ss_pred eCCCCc-CCc-------CCHHHcccCcccCEEeccCCCcc
Confidence 999998 552 44 346677 9999999999976
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.7e-19 Score=179.04 Aligned_cols=196 Identities=20% Similarity=0.205 Sum_probs=123.5
Q ss_pred CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT------- 73 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp------- 73 (417)
.+|.-+..+|++|+|++|.|+.++ ..++.+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 146 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYL 146 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSC
T ss_pred ccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhccc
Confidence 456544448999999999999774 468999999999999988877777889999999999999964 44433
Q ss_pred -CCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCcccCCCCCCCEEE
Q 014835 74 -EIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLI 143 (417)
Q Consensus 74 -~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 143 (417)
.+..|+++++ ..+..+++ +.|++++|..++.+|. .+..+++|++|++++|.+.+ +| .+..+++|+.|+
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEE
Confidence 3333444444 23445555 5555555545544443 34555666666666655433 23 355556666666
Q ss_pred eeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 144 VDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 144 L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
|++|.+..+ |..+..+++|+.|+|++|. +.+. .|..+..+ +|+.|++++|.|+ +|+.
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLI------ERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCc-CceE------CHHHhcCCCCCCEEECCCCcCCccChH
Confidence 666666443 4455666666666666665 3323 34444455 6666666666655 5544
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=5.7e-19 Score=163.60 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=149.7
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
..++++++++.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|. +..++. ..+..+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~~l 82 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSA---------GVFDDL 82 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT---------TTTTTC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCH---------hHhccC
Confidence 57899999999999998776 699999999998888878889999999999999964 444442 467888
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L 167 (417)
++ +.|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.++.+|. .+..+++|++|+|
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 99 999999998877667778899999999999999887666678999999999999999988876 6899999999999
Q ss_pred cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
++|. +++. .+..+..+ .|+.|++++|+++
T Consensus 163 ~~N~-l~~~------~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 163 STNQ-LQSV------PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CSSC-CSCC------CTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCc-CCcc------CHHHHhCCCCCCEEEeeCCcee
Confidence 9998 5533 34456677 9999999999976
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=6e-19 Score=167.24 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=136.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+++++++++++++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|. ++.++ ....+
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-----------~~~~l 76 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ-----------VDGTL 76 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEE-----------CCSCC
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCccc-----------CCCCC
Confidence 78999999999999988764 689999999988777777788899999999999853 44443 22567
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L 167 (417)
++ +.|++++|.+ ..+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|. .+..+++|+.|+|
T Consensus 77 ~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 77 8888888855 4677778888888888888888777666778888888888888888877765 4577888888888
Q ss_pred cCCCCChhhhhcccCCCCcc-ccC-CcceeecCCCccc-cCcC
Q 014835 168 SNIKRLPEYLQLHLQLPENG-LEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~l-~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
++|+ ++ . +|... ..+ .|+.|++++|.|+ +|..
T Consensus 156 ~~N~-l~-~------l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 156 ANNN-LT-E------LPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TTSC-CS-C------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCc-CC-c------cCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 8888 54 3 66554 446 8888888888877 6665
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=5e-19 Score=170.76 Aligned_cols=193 Identities=19% Similarity=0.172 Sum_probs=125.8
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-----CC
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-----EI 75 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-----~l 75 (417)
++|.....+|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..|..+.++++|++|++++|. +..+| .+
T Consensus 47 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L 125 (332)
T 2ft3_A 47 AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSL 125 (332)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTC
T ss_pred ccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccC
Confidence 4565444489999999999998765 68999999999999988877778889999999999999964 44554 34
Q ss_pred CccccCCC-------cccccccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEee
Q 014835 76 PSCNIDGG-------IGIERLAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVD 145 (417)
Q Consensus 76 ~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 145 (417)
..++++++ ..+..+++ +.|++++|.+.. ..|..+..+ +|++|++++|.+.+ +|..+. ++|++|+++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLD 201 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECC
Confidence 44555554 23666777 788888776632 445555555 55555555555333 333322 456666666
Q ss_pred ccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835 146 RTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 146 ~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~ 206 (417)
+|.+..++ ..+..+++|+.|+|++|. +.+. .+..+..+ .|+.|++++|.++ +|.
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMI------ENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCC------CTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCcC------ChhHhhCCCCCCEEECCCCcCeecCh
Confidence 66665444 456666666666666665 3322 23344555 6666666666655 554
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=178.00 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=98.0
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.....+|++|+|++|.++.+|. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|. ++.+|.
T Consensus 45 ~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------ 117 (353)
T 2z80_A 45 SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSS------ 117 (353)
T ss_dssp SCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCH------
T ss_pred cccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCH------
Confidence 4666444489999999999998887 68999999999999988777777789999999999999964 344432
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcc--cccCCCCCcEEeccccc-CCccCCcccCCCCCCCEEEeeccCCCCc-chh
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPS--SLCMFKSLTSLEIIDCQ-YFMILPDELGNLEALETLIVDRTAMREV-PES 155 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~--~l~~l~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~ 155 (417)
..+..+++ ++|++++|.+. .+|. .+..+++|++|++++|. +....+..++.+++|++|++++|.+..+ |..
T Consensus 118 ---~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 118 ---SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp ---HHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ---hHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 12444444 55555554333 2332 34445555555555543 2222233444455555555555554332 344
Q ss_pred ccCCCCCcEEEccCCC
Q 014835 156 LGQLSSLKILVLSNIK 171 (417)
Q Consensus 156 l~~L~~L~~L~L~~n~ 171 (417)
+..+++|++|++++|.
T Consensus 194 l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTTCSEEEEEEEECSC
T ss_pred HhccccCCeecCCCCc
Confidence 4444555555554444
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=9.6e-20 Score=196.14 Aligned_cols=179 Identities=23% Similarity=0.279 Sum_probs=139.5
Q ss_pred cccEEEeecCCCc-ccCccccCCcCcceeec-cccccCcc----------------------------------------
Q 014835 10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYI-VDCSMLES---------------------------------------- 47 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L-s~n~~~~~---------------------------------------- 47 (417)
+++.|+|+++++. .+|+++++|++|++|+| ++|.+.+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 6889999999987 88888999999999999 55532221
Q ss_pred ------------------------------------ccccCCCCCCCcEEeeecCCCCC-----------------cCCC
Q 014835 48 ------------------------------------ISSSIFKLKSLQSIEISNCPIFE-----------------RFTE 74 (417)
Q Consensus 48 ------------------------------------lp~~l~~L~~L~~L~Ls~c~~l~-----------------~lp~ 74 (417)
+|..++++++|++|+|++|...+ .+|
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP- 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN- 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-
Confidence 78888889999999999976444 155
Q ss_pred CCccccCCCcccc--cccc-ceEEcCCCCCCCCCcccccCCCCCcEEeccccc-CCc-cCCcccCCC-------CCCCEE
Q 014835 75 IPSCNIDGGIGIE--RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ-YFM-ILPDELGNL-------EALETL 142 (417)
Q Consensus 75 l~~l~l~g~~~l~--~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~-~~~-~lp~~l~~l-------~~L~~L 142 (417)
..++ .+++ +.|+|++|.+.+.+|..+..+++|+.|+|++|+ +.+ .+|..++.+ ++|+.|
T Consensus 483 ---------~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 483 ---------EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp ---------SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred ---------hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 4555 8888 888888888888888888888888888888887 666 677655544 488888
Q ss_pred EeeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 143 IVDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 143 ~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
++++|.+..+|. .++.+++|+.|+|++|. +. . +| .+..+ .|+.|++++|.++ +|..
T Consensus 554 ~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~-~------lp-~~~~L~~L~~L~Ls~N~l~~lp~~ 613 (876)
T 4ecn_A 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VR-H------LE-AFGTNVKLTDLKLDYNQIEEIPED 613 (876)
T ss_dssp ECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CC-B------CC-CCCTTSEESEEECCSSCCSCCCTT
T ss_pred EeeCCcCCccCChhhhhcCCCCCEEECCCCC-cc-c------ch-hhcCCCcceEEECcCCccccchHH
Confidence 888888888887 78888888888888887 44 4 77 66677 8888888888877 6653
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=3.3e-19 Score=175.75 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=38.3
Q ss_pred cCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835 133 LGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 133 l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~ 206 (417)
++.+++|++|++++|.+..+ |..+..+++|+.|+|++|. ++ . +|..+..+ .|+.|++++|.++ +|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~-~------~~~~~~~l~~L~~L~L~~n~l~~~~~ 312 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV-A------LNLYGQPIPTLKVLDLSHNHLLHVER 312 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CC-E------EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Cc-c------cCcccCCCCCCCEEECCCCcceecCc
Confidence 44556666666666666443 4556666666666666666 33 2 44444445 6666666666655 443
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.1e-19 Score=171.22 Aligned_cols=193 Identities=18% Similarity=0.206 Sum_probs=148.4
Q ss_pred CCCC--cccC-cccEEEeecCCCccc---CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC
Q 014835 2 NFPS--VTSC-HVYTLELVKVGIKEL---PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI 75 (417)
Q Consensus 2 ~lP~--~~~~-~L~~L~Ls~n~l~~l---p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l 75 (417)
.+|. +... +|++|+|++|.++.+ |..+..+++|++|+|++|.+. .+|..+..+++|++|++++|. +..++..
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-l~~~~~~ 119 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEF 119 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE-EESSTTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc-ccccccc
Confidence 4555 2344 999999999999855 566788999999999997654 577778899999999999963 3333311
Q ss_pred CccccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCc-
Q 014835 76 PSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREV- 152 (417)
Q Consensus 76 ~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~l- 152 (417)
..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.++.+
T Consensus 120 --------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 120 --------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp --------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred --------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 25677788 889999888777777888888899999999888776 5788888889999999999988766
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE 211 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~ 211 (417)
|..+..+++|+.|+|++|. +++. .+..+..+ .|+.|++++|.++ .++..+..
T Consensus 192 ~~~~~~l~~L~~L~L~~N~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNN-FFSL------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC-CSBC------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred HHHhcCCCCCCEEECCCCc-cCcc------ChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 5678888899999999888 4422 23345566 8899999999877 44443433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=1.4e-18 Score=174.49 Aligned_cols=204 Identities=17% Similarity=0.166 Sum_probs=139.9
Q ss_pred CCCCcccCcccEEEeecCCCccc-CccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCC-------CcC
Q 014835 2 NFPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIF-------ERF 72 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l-------~~l 72 (417)
.+|. ...+|++|+|++|.++.+ |..++.+++|++|+|++|.+.+.+ |..+.++++|++|+|++|... ..+
T Consensus 24 ~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 24 QVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp SCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred cCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 4555 223788888888888765 556778888888888887766555 445777888888888876532 233
Q ss_pred CCCCccccCCC---------cccccccc-ceEEcCCCCCCCCCccc-ccCCCCCcEEecccccCCccCCcccCCC-----
Q 014835 73 TEIPSCNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSS-LCMFKSLTSLEIIDCQYFMILPDELGNL----- 136 (417)
Q Consensus 73 p~l~~l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l----- 136 (417)
+.+..|+++++ ..+..+++ +.|+|++|.+.+..|.. +..+++|++|++++|.+.+..|..+..+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 44455566555 12666777 77777777776666655 6677777777777776655444332211
Q ss_pred --------------------------------------------------------------------------------
Q 014835 137 -------------------------------------------------------------------------------- 136 (417)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (417)
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence
Q ss_pred ------------CCCCEEEeeccCCCC-cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCcc
Q 014835 137 ------------EALETLIVDRTAMRE-VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKL 202 (417)
Q Consensus 137 ------------~~L~~L~L~~n~l~~-lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L 202 (417)
++|+.|++++|.+.. +|..++.+++|+.|+|++|. +.+. .|..+..+ .|+.|++++|.+
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKI------DDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCC
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-cccc------ChhHhcCcccCCEEECCCCcc
Confidence 356666666676643 46788999999999999999 5544 56677888 999999999998
Q ss_pred c-cCcCcccccc
Q 014835 203 T-LDPNELSEIV 213 (417)
Q Consensus 203 ~-lp~~~L~~l~ 213 (417)
+ +++..+..+.
T Consensus 336 ~~~~~~~~~~l~ 347 (455)
T 3v47_A 336 GSIDSRMFENLD 347 (455)
T ss_dssp CEECGGGGTTCT
T ss_pred CCcChhHhcCcc
Confidence 8 6665444443
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=174.80 Aligned_cols=187 Identities=20% Similarity=0.208 Sum_probs=98.7
Q ss_pred cccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835 10 HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~ 81 (417)
+|++|+|++|.++.+ |..++.+++|++|+|++|.+....+..+.++++|++|+|++|.. +..++.+..++++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 666777766666654 44566666666666666554433333456666666666666542 2223334444444
Q ss_pred CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEeccccc------------------------CCccC
Q 014835 82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ------------------------YFMIL 129 (417)
Q Consensus 82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~------------------------~~~~l 129 (417)
++ ..+..+++ +.|++++|.+....+..+..+++|+.|++++|. ..+.+
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 43 24455555 566665554443333334444444444444444 44444
Q ss_pred CcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 130 PDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 130 p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
|.......+|+.|++++|.++.+| ..+..+++|+.|+|++|. +++. .+..+..+ .|+.|++++|.++
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTI------EGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEE------CTTSCTTCTTCCEEECCSSCCS
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCcc------ChhhccccccCCEEECCCCccc
Confidence 433333345555555566665555 345666677777777666 3322 22233344 5555555555544
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.7e-18 Score=174.14 Aligned_cols=184 Identities=22% Similarity=0.258 Sum_probs=151.8
Q ss_pred cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835 10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~ 81 (417)
+|++|+|++|.|+.++. .+..+++|++|+|++|.+....+..+..+++|++|+|++|.. +..++.+..|+++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence 89999999999997764 588899999999999877665556688899999999998753 2334555567776
Q ss_pred CC--------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc
Q 014835 82 GG--------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV 152 (417)
Q Consensus 82 g~--------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l 152 (417)
++ ..+..+++ +.|+|++|.+. .+| .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+..+
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred CCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence 63 35778899 99999999765 455 478899999999999999999899999999999999999999765
Q ss_pred -chhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835 153 -PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 153 -p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~ 203 (417)
|..+..+++|+.|+|++|. ++ . +|.. +..+ .|+.|++++|++.
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~-l~-~------~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNN-LS-S------LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CS-C------CCTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCCCCCCEEECCCCc-CC-c------cChHHhccccCCCEEEccCCCcC
Confidence 5678999999999999998 55 2 5544 4566 9999999999976
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=173.41 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=154.4
Q ss_pred cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCC
Q 014835 6 VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIP 76 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~ 76 (417)
+... +|++|+|++|.++.++. .+..+++|++|+|++|.+....+..+..+++|++|+|++|.. +..++.+.
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 3344 89999999999998774 588899999999999876665556788999999999999753 33445566
Q ss_pred ccccCCC--------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeecc
Q 014835 77 SCNIDGG--------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRT 147 (417)
Q Consensus 77 ~l~l~g~--------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 147 (417)
.|+++++ ..+..+++ +.|+|++|.+. .+| .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 6777763 35778999 99999999654 566 4788999999999999999988999999999999999999
Q ss_pred CCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835 148 AMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 148 ~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~ 203 (417)
.+..++ ..+..+++|+.|+|++|+ ++. +|.. +..+ .|+.|++++|++.
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-------~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNN-LTL-------LPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSC-CCC-------CCTTTTSSCTTCCEEECCSSCEE
T ss_pred ceeEEChhhhcCCCCCCEEECCCCC-CCc-------cChhHhccccCCCEEEcCCCCcc
Confidence 997664 578999999999999998 552 5544 4566 9999999999976
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=8.9e-19 Score=182.46 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=82.3
Q ss_pred ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+..+|..+..+++|+.|+|++|.
T Consensus 235 ~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence 444444444433 345677888888888888888877888888888888888888888788777778888888888887
Q ss_pred CChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccccc
Q 014835 172 RLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIV 213 (417)
Q Consensus 172 ~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~ 213 (417)
+. . +|..+..+ .|+.|++++|.++ +|...+..+.
T Consensus 313 -l~-~------i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 313 -LL-H------VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp -CC-C------CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred -CC-c------cCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 44 3 77777777 8888888888877 6655554444
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=174.12 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=107.0
Q ss_pred CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|..+..+++.|+|++|.++.++ ..+..+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|.
T Consensus 25 ~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------ 97 (477)
T 2id5_A 25 AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPL------ 97 (477)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCT------
T ss_pred cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCc------
Confidence 466654448999999999999875 469999999999999998888778899999999999999964 445543
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ 158 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 158 (417)
..+..+++ +.|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..
T Consensus 98 ---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 98 ---GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp ---TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred ---ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 23445555 555555555555455555555555555555555555555555555555555555555544442 3445
Q ss_pred CCCCcEEEccCCC
Q 014835 159 LSSLKILVLSNIK 171 (417)
Q Consensus 159 L~~L~~L~L~~n~ 171 (417)
+++|+.|+|++|.
T Consensus 175 l~~L~~L~l~~n~ 187 (477)
T 2id5_A 175 LHGLIVLRLRHLN 187 (477)
T ss_dssp CTTCCEEEEESCC
T ss_pred cCCCcEEeCCCCc
Confidence 5555555555544
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3.2e-19 Score=192.08 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=119.3
Q ss_pred CCCcccC--cccEEEeecCCCcc------------------cCcccc--CCcCcceeeccccccCccccccCCCCCCCcE
Q 014835 3 FPSVTSC--HVYTLELVKVGIKE------------------LPSSIE--CLSNLKKLYIVDCSMLESISSSIFKLKSLQS 60 (417)
Q Consensus 3 lP~~~~~--~L~~L~Ls~n~l~~------------------lp~~i~--~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~ 60 (417)
+|+.++. +|++|+|++|.++. +|..++ .+++|++|+|++|.+.+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 6765544 99999999999997 999988 9999999999999999999999999999999
Q ss_pred EeeecCCCCC--cCCCCCccccCCCccccccc-------c-ceEEcCCCCCCCCCcc--cccCCCCCcEEecccccCCcc
Q 014835 61 IEISNCPIFE--RFTEIPSCNIDGGIGIERLA-------S-CRLVLEDCSSLQSLPS--SLCMFKSLTSLEIIDCQYFMI 128 (417)
Q Consensus 61 L~Ls~c~~l~--~lp~l~~l~l~g~~~l~~l~-------~-~~L~L~~n~~l~~lp~--~l~~l~~L~~L~L~~n~~~~~ 128 (417)
|+|++|+.+. .+| ..++.++ + +.|+|++|.+. .+|. .+..+++|+.|+|++|.+. .
T Consensus 520 L~Ls~N~~lsg~~iP----------~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 520 LNIACNRGISAAQLK----------ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp EECTTCTTSCHHHHH----------HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred EECcCCCCcccccch----------HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 9999986343 344 2233332 5 55666655544 5555 5555666666666665544 5
Q ss_pred CCcccCCCCCCCEEEeeccCCCCcchhccCCCC-CcEEEccCCCCChhhhhcccCCCCccccC-C--cceeecCCCccc
Q 014835 129 LPDELGNLEALETLIVDRTAMREVPESLGQLSS-LKILVLSNIKRLPEYLQLHLQLPENGLEG-I--PEYLRRSPRKLT 203 (417)
Q Consensus 129 lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~-L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~--L~~L~l~~n~L~ 203 (417)
+| .++.+++|+.|+|++|.+..+|..+..+++ |+.|+|++|. +. . +|..+... . |+.|++++|.+.
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~-~------lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LK-Y------IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CC-S------CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CC-c------CchhhhccccCCCCEEECcCCcCC
Confidence 55 555555666666666655555555555555 6666665555 33 2 44443333 2 555555555543
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=3.8e-18 Score=160.04 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=147.3
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|+.|+++++.++.++. ++.+++|++|+|++|.+.+ ++ .+.++++|++|++++| .++.++. ..+..+
T Consensus 42 ~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n-~l~~~~~---------~~~~~l 108 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGN-QLQSLPN---------GVFDKL 108 (272)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTS-CCCCCCT---------TTTTTC
T ss_pred ceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCC-ccCccCh---------hHhcCC
Confidence 79999999999998875 8899999999999987655 44 5889999999999996 4445543 457888
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L 167 (417)
++ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .++.+++|+.|+|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 99 999999998877777778899999999999999887777778999999999999999987765 4688999999999
Q ss_pred cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
++|. +++. .|..+..+ .|+.|++++|++.
T Consensus 189 ~~N~-l~~~------~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 189 YQNQ-LKSV------PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSSC-CSCC------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCc-CCcc------CHHHHhCCcCCCEEEccCCCcc
Confidence 9998 5533 44446677 9999999999976
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2.8e-18 Score=178.63 Aligned_cols=194 Identities=19% Similarity=0.179 Sum_probs=114.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC--------CCCCccccC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF--------TEIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l--------p~l~~l~l~ 81 (417)
+|++|++++|.++++|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.....+ +.+..++++
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 778888888877777777777788888888877766666667777788888888776543332 333344444
Q ss_pred CC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcc-cCCCCCCCEEEeeccCCC
Q 014835 82 GG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDE-LGNLEALETLIVDRTAMR 150 (417)
Q Consensus 82 g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~L~~n~l~ 150 (417)
++ ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 43 12445555 66666666555555555556666666666666555444332 555666666666666663
Q ss_pred C-cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 151 E-VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 151 ~-lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
. .|..+..+++|+.|++++|. +.+. .+..+..+..+ .|+.|++++|.++ +++.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~-l~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNH-FPKG---NIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCB-CGGG---EECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred CcCHHHHhCCCCCCEEECCCCC-CCcc---ccccchhhccCCCccEEECCCCccCccChh
Confidence 3 34455566666666666665 3211 00012334455 6666666666655 4433
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1.9e-18 Score=162.12 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=150.0
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.++.+... +|++|+|++|.++.++ .++.+++|++|+|++|.+.+..+..+.++++|++|++++|. +..++.
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------ 126 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPD------ 126 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT------
T ss_pred cccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCH------
Confidence 35566666 9999999999999876 59999999999999998877667778999999999999964 444443
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ 158 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 158 (417)
..+..+++ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+..+|. .+..
T Consensus 127 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (272)
T 3rfs_A 127 ---GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203 (272)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ---HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC
Confidence 45788999 999999998776666677899999999999999887777778999999999999999977765 5789
Q ss_pred CCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc--cCcC
Q 014835 159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT--LDPN 207 (417)
Q Consensus 159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~--lp~~ 207 (417)
+++|+.|+|++|+ +... .| .++.|++..|.++ +|..
T Consensus 204 l~~L~~L~l~~N~-~~~~------~~------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 204 LTSLQYIWLHDNP-WDCT------CP------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CTTCCEEECCSSC-BCCC------TT------TTHHHHHHHHHTGGGBBCT
T ss_pred CcCCCEEEccCCC-cccc------Cc------HHHHHHHHHHhCCCcccCc
Confidence 9999999999998 3312 22 5777777777766 5553
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.2e-18 Score=163.60 Aligned_cols=180 Identities=17% Similarity=0.160 Sum_probs=152.1
Q ss_pred cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCC
Q 014835 6 VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~ 83 (417)
+... +|++|+|++|.++.++. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|. +..++.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------- 117 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLEN--------- 117 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTT---------
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCc---------
Confidence 3344 99999999999998876 58999999999999988877777889999999999999964 444442
Q ss_pred cccccccc-ceEEcCCCCCCC-CCcccccCCCCCcEEecccccCCccCCcccCCCCCCC----EEEeeccCCCCcchhcc
Q 014835 84 IGIERLAS-CRLVLEDCSSLQ-SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE----TLIVDRTAMREVPESLG 157 (417)
Q Consensus 84 ~~l~~l~~-~~L~L~~n~~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~----~L~L~~n~l~~lp~~l~ 157 (417)
..+..+++ +.|++++|.+.. .+|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.+..++....
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 45788899 999999998876 4799999999999999999998887777777666666 89999999998887777
Q ss_pred CCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835 158 QLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~ 203 (417)
...+|+.|+|++|. ++ . +|.. +..+ .|+.|++++|+++
T Consensus 198 ~~~~L~~L~L~~n~-l~-~------~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LK-S------VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSCCEEEEECCSSC-CS-C------CCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccEEECCCCc-ee-e------cCHhHhcccccccEEEccCCccc
Confidence 77799999999999 55 3 5555 4567 9999999999987
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=5.2e-19 Score=169.29 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=123.2
Q ss_pred cccEEEeecCCCc-ccCccc--cCCcCcceeeccccccCccccccCCCC-----CCCcEEeeecCCCCCcCCCCCccccC
Q 014835 10 HVYTLELVKVGIK-ELPSSI--ECLSNLKKLYIVDCSMLESISSSIFKL-----KSLQSIEISNCPIFERFTEIPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i--~~L~~L~~L~Ls~n~~~~~lp~~l~~L-----~~L~~L~Ls~c~~l~~lp~l~~l~l~ 81 (417)
+|++|+|++|.++ .+|..+ +.+++|++|+|++|.+.+. |..++.+ ++|++|+|++|.. ..++.
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~------- 166 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSC------- 166 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCT-------
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchH-------
Confidence 8999999999998 788876 8899999999999877766 7666666 8999999999654 33332
Q ss_pred CCcccccccc-ceEEcCCCCCCCC--Ccccc--cCCCCCcEEecccccCCc--cCC-cccCCCCCCCEEEeeccCCCCcc
Q 014835 82 GGIGIERLAS-CRLVLEDCSSLQS--LPSSL--CMFKSLTSLEIIDCQYFM--ILP-DELGNLEALETLIVDRTAMREVP 153 (417)
Q Consensus 82 g~~~l~~l~~-~~L~L~~n~~l~~--lp~~l--~~l~~L~~L~L~~n~~~~--~lp-~~l~~l~~L~~L~L~~n~l~~lp 153 (417)
..+..+++ +.|++++|.+.+. +|..+ ..+++|++|++++|.+.+ .++ ..+..+++|+.|++++|.+...+
T Consensus 167 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 --EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp --TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred --HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 45667777 7777777766554 33333 677777777777777652 222 22346677777777777775433
Q ss_pred --hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cC
Q 014835 154 --ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LD 205 (417)
Q Consensus 154 --~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp 205 (417)
..+..+++|++|+|++|. ++ . +|..+. -.|+.|++++|+|+ +|
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~-l~-~------ip~~~~-~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTG-LK-Q------VPKGLP-AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSC-CS-S------CCSSCC-SEEEEEECCSSCCCSCC
T ss_pred chhhhhhcCCCCEEECCCCc-cC-h------hhhhcc-CCceEEECCCCCCCCCh
Confidence 345556777777777777 44 3 665544 46777777777776 54
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5e-18 Score=163.50 Aligned_cols=191 Identities=18% Similarity=0.272 Sum_probs=154.9
Q ss_pred cccC-cccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCC-------CcCCCCC
Q 014835 6 VTSC-HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF-------ERFTEIP 76 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l-------~~lp~l~ 76 (417)
+... +|++|+|++|.++.+ |..++.+++|++|+|++|.+. .+|..+. ++|++|++++|..- ..++.+.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 3344 999999999999977 677999999999999997644 6776554 78999999986532 2344555
Q ss_pred ccccCCC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec
Q 014835 77 SCNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR 146 (417)
Q Consensus 77 ~l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 146 (417)
.++++++ ..+..+++ +.|++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 5666554 34677888 99999999654 5676543 8999999999998888889999999999999999
Q ss_pred cCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccc
Q 014835 147 TAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELS 210 (417)
Q Consensus 147 n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~ 210 (417)
|.++.++. .+..+++|+.|+|++|. ++ . +|..+..+ .|+.|++++|.++ +|+..+.
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNK-LV-K------VPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSC-CS-S------CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCc-Cc-c------CChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 99977664 78999999999999998 55 4 88888888 9999999999998 7776553
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=3.1e-18 Score=168.79 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=96.6
Q ss_pred ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.++.+|..+..+++|+.|+|++|+
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 5566666654432 46778999999999999999888999999999999999999999999888899999999999998
Q ss_pred CChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccccccccccccc
Q 014835 172 RLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIVKDGWMKQ 220 (417)
Q Consensus 172 ~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~~~~~~~n 220 (417)
+. . +|..+..+ .|+.|++++|.++ +|...+..+.......|
T Consensus 307 -l~-~------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 307 -LL-H------VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp -CC-C------CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred -ce-e------cCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCC
Confidence 54 3 77777778 9999999999988 77655555554333333
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=4.4e-18 Score=161.28 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|..+..+++.|+|++|.++.++ ..+..+++|++|+|++|.+.+ ++. ...+++|++|++++| .++.+|
T Consensus 24 ~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N-~l~~l~------- 93 (290)
T 1p9a_G 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHN-QLQSLP------- 93 (290)
T ss_dssp SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSS-CCSSCC-------
T ss_pred cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEECCCC-cCCcCc-------
Confidence 456544448999999999999775 469999999999999976554 555 378999999999995 566777
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQ 158 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~ 158 (417)
..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|+++.+|.. +..
T Consensus 94 ---~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 94 ---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp ---CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred ---hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 46778889 9999999988776678899999999999999998877777789999999999999999998864 578
Q ss_pred CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
+++|+.|+|++|. ++ . +|..+... .|+.|++++|++.
T Consensus 171 l~~L~~L~L~~N~-l~-~------ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 171 LENLDTLLLQENS-LY-T------IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTCCEEECCSSC-CC-C------CCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCCCEEECCCCc-CC-c------cChhhcccccCCeEEeCCCCcc
Confidence 9999999999999 55 4 89888888 9999999999865
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.1e-18 Score=177.28 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=150.4
Q ss_pred cccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC---CCCCccccCCC--
Q 014835 10 HVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF---TEIPSCNIDGG-- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l---p~l~~l~l~g~-- 83 (417)
+|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..| +..+++|++|+|++|. ++.+ +.+..|+++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCcC
Confidence 7999999999999776 469999999999999988776655 8899999999999974 3333 45555677766
Q ss_pred --cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccC-CCCCCCEEEeeccCCCCcchhccCC
Q 014835 84 --IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELG-NLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 84 --~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
.....+++ +.|+|++|.+.+..|..++.+++|+.|+|++|.+.+..|..+. .+++|+.|+|++|.++.+|. ...+
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l 190 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVF 190 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccC
Confidence 22334677 8899999988887788888899999999999998887777775 78999999999999987765 4468
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
++|+.|+|++|. ++ . +|..+..+ .|+.|++++|.|+ +|..
T Consensus 191 ~~L~~L~Ls~N~-l~-~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 191 AKLKTLDLSSNK-LA-F------MGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp TTCCEEECCSSC-CC-E------ECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred CCCCEEECCCCC-CC-C------CCHhHcCCCCccEEEecCCcCcccchh
Confidence 899999999998 55 2 66667777 8999999999988 7664
No 43
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=7e-18 Score=156.26 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=137.9
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|..+..+|+.|+|++|.++.++. .++.+++|++|+|++|.+.+..|..+.++++|++|+|++|. ++.+|.
T Consensus 28 ~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------ 100 (251)
T 3m19_A 28 SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPL------ 100 (251)
T ss_dssp SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT------
T ss_pred ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccCh------
Confidence 4565544589999999999997766 58999999999999998888777778999999999999964 455553
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ 158 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 158 (417)
..+..+++ +.|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..++.+++|+.|+|++|.+..+|. .+..
T Consensus 101 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 101 ---GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ---hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 46788899 999999998776656667899999999999999887767689999999999999999987775 7889
Q ss_pred CCCCcEEEccCCC
Q 014835 159 LSSLKILVLSNIK 171 (417)
Q Consensus 159 L~~L~~L~L~~n~ 171 (417)
+++|+.|+|++|+
T Consensus 178 l~~L~~L~l~~N~ 190 (251)
T 3m19_A 178 LGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEeeCCc
Confidence 9999999999998
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=5.1e-18 Score=176.64 Aligned_cols=205 Identities=19% Similarity=0.156 Sum_probs=167.4
Q ss_pred CCCCcccC--cccEEEeecCCCccc-CccccCCcCcceeeccccccCcccccc-CCCCCCCcEEeeecCCC---------
Q 014835 2 NFPSVTSC--HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSS-IFKLKSLQSIEISNCPI--------- 68 (417)
Q Consensus 2 ~lP~~~~~--~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~L~~L~~L~Ls~c~~--------- 68 (417)
++|+.+.. +|++|++++|.++.+ |..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 46664444 999999999999976 446999999999999999888777654 88999999999999753
Q ss_pred CCcCCCCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCcccCCCCCC
Q 014835 69 FERFTEIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEAL 139 (417)
Q Consensus 69 l~~lp~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 139 (417)
+..++.+..++++++ ..+..+++ +.|++++|.+.+..|. .+..+++|+.|++++|.+.+..|..++.+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 334556666777776 46778889 9999999988776654 48899999999999999988889999999999
Q ss_pred CEEEeeccCCCC--c--chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccccc
Q 014835 140 ETLIVDRTAMRE--V--PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIV 213 (417)
Q Consensus 140 ~~L~L~~n~l~~--l--p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~ 213 (417)
++|++++|.+.. + +..+..+++|+.|++++|. +++. .|..+..+ .|+.|++++|.++ +++..+..+.
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSI------DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCcc------ChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 999999999954 2 2568899999999999998 5545 57778888 9999999999987 5555455444
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.4e-18 Score=166.67 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=140.7
Q ss_pred cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC--CCcCCCCCccccCCC---
Q 014835 10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI--FERFTEIPSCNIDGG--- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~--l~~lp~l~~l~l~g~--- 83 (417)
+|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..| +..+++|++|++++|.. +...+.+..++++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence 79999999999998774 69999999999999987766544 88999999999999742 122345555666665
Q ss_pred -cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcchhccCCC
Q 014835 84 -IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVPESLGQLS 160 (417)
Q Consensus 84 -~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~l~~L~ 160 (417)
.....+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.+|. ...++
T Consensus 113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~ 191 (317)
T 3o53_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFA 191 (317)
T ss_dssp EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCT
T ss_pred CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccc
Confidence 22334667 888888887776666677778888888888888777666655 467888888888888877754 33578
Q ss_pred CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
+|+.|+|++|. ++ . +|..+..+ .|+.|++++|.++ +|..
T Consensus 192 ~L~~L~Ls~N~-l~-~------l~~~~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 192 KLKTLDLSSNK-LA-F------MGPEFQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp TCCEEECCSSC-CC-E------ECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred cCCEEECCCCc-CC-c------chhhhcccCcccEEECcCCcccchhhH
Confidence 88888888887 44 2 66667677 8888888888877 6653
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=2.1e-18 Score=179.60 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=151.9
Q ss_pred cccEEEeecCCCccc---CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835 10 HVYTLELVKVGIKEL---PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI 86 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~l---p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l 86 (417)
+|++|++++|.++.+ |..+..+++|++|++++|.+. .+|..+..+++|++|++++|...+..|. ..+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~ 420 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF---------SAF 420 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTT---------TTT
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccCh---------hhh
Confidence 899999999999865 777899999999999997644 5778899999999999999754443332 357
Q ss_pred ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCc
Q 014835 87 ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLK 163 (417)
Q Consensus 87 ~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~ 163 (417)
..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+..+ |..+..+++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 77888 999999998888888889999999999999998877 4788899999999999999999655 56788999999
Q ss_pred EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
.|+|++|+ +++. .|..+..+ .|+.|++++|.++ +|..
T Consensus 501 ~L~Ls~N~-l~~~------~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 501 LLNMSHNN-LLFL------DSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp EEECCSSC-CSCE------EGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred EEECCCCc-CCCc------CHHHccCCCcCCEEECCCCcCcccCHh
Confidence 99999998 5544 57777788 9999999999988 7765
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.8e-18 Score=165.60 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=147.2
Q ss_pred cccEEEeecCCCc--ccCcccc-------CCcCcceeeccccccCccccccC--CCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835 10 HVYTLELVKVGIK--ELPSSIE-------CLSNLKKLYIVDCSMLESISSSI--FKLKSLQSIEISNCPIFERFTEIPSC 78 (417)
Q Consensus 10 ~L~~L~Ls~n~l~--~lp~~i~-------~L~~L~~L~Ls~n~~~~~lp~~l--~~L~~L~~L~Ls~c~~l~~lp~l~~l 78 (417)
.|+.|+|++|.++ .+|..+. .+++|++|+|++|.+.+.+|..+ ..+++|++|+|++|. +..+|
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~----- 137 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD----- 137 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS-----
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh-----
Confidence 5888999999986 5777665 79999999999999988899876 899999999999964 44445
Q ss_pred ccCCCcccccc-----cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCcc--CCccc--CCCCCCCEEEeeccC
Q 014835 79 NIDGGIGIERL-----AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI--LPDEL--GNLEALETLIVDRTA 148 (417)
Q Consensus 79 ~l~g~~~l~~l-----~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~--lp~~l--~~l~~L~~L~L~~n~ 148 (417)
..+..+ ++ ++|++++|.+.+..|..+..+++|++|++++|.+.+. +|..+ +.+++|++|++++|.
T Consensus 138 -----~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 138 -----AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp -----SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred -----HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 455555 78 9999999998887778999999999999999998765 34444 889999999999999
Q ss_pred CCCcch----hccCCCCCcEEEccCCCCChhhhhcccCCC-CccccC-CcceeecCCCccc-cCcC
Q 014835 149 MREVPE----SLGQLSSLKILVLSNIKRLPEYLQLHLQLP-ENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 149 l~~lp~----~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp-~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
++.++. .+..+++|+.|+|++|. +++. .| ..+..+ .|+.|++++|.|+ +|..
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNS-LRDA------AGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS------CCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc------cchhhhhhcCCCCEEECCCCccChhhhh
Confidence 985442 34678999999999998 5534 43 344456 9999999999988 7765
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=1.8e-17 Score=159.81 Aligned_cols=191 Identities=22% Similarity=0.319 Sum_probs=147.4
Q ss_pred cccC-cccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCC
Q 014835 6 VTSC-HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIP 76 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~ 76 (417)
+... +|++|+|++|.++.+ |..++.+++|++|+|++|.+. .+|..+. ++|++|++++|.. +..++.+.
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 3344 899999999999976 557899999999999997654 6776554 7889999888643 22334445
Q ss_pred ccccCCC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec
Q 014835 77 SCNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR 146 (417)
Q Consensus 77 ~l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 146 (417)
.++++++ ..+..+ + +.|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 5666655 234445 6 88999998654 4676553 7899999999998888778899999999999999
Q ss_pred cCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835 147 TAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE 211 (417)
Q Consensus 147 n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~ 211 (417)
|.++.++. .+..+++|+.|+|++|. ++ . +|..+..+ .|+.|++++|.++ +|...+..
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNK-LS-R------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSC-CC-B------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCc-Ce-e------cChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 99977664 78889999999999998 55 4 88888888 9999999999988 77665443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.1e-17 Score=174.12 Aligned_cols=176 Identities=14% Similarity=0.075 Sum_probs=95.2
Q ss_pred cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
+|++|+|++|.++.+|+ .++.+++|++|+|++|.+.+..|..++++++|++|+|++| .+..+|. ..+..
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~---------~~~~~ 145 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR---------GIFHN 145 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---------TTTTT
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCH---------HHhcc
Confidence 55555555555554443 4555555555555555554444444555555555555554 2223331 22455
Q ss_pred ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCC--------------------------------
Q 014835 89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGN-------------------------------- 135 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~-------------------------------- 135 (417)
+++ +.|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 666 66666666665555555666666666666666544321111111
Q ss_pred -----CCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 136 -----LEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 136 -----l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.++|+.|+|++|.+... ..+..+++|+.|+|++|. +.+. .|..+..+ .|+.|++++|.++
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~------~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE-LEKI------MYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp EECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCEE------ESGGGTTCSSCCEEECTTSCCC
T ss_pred cccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCc-cCCC------CHHHhcCccCCCEEECCCCCCC
Confidence 12344444444444332 345666777777777776 4434 45566666 7777777777766
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=167.69 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=148.7
Q ss_pred cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCC
Q 014835 6 VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~ 83 (417)
+... +|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..+..+.++++|++|++++| .++.+|..
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-------- 142 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGET-------- 142 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSS--------
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCch--------
Confidence 4444 99999999999997754 5999999999999998776544455889999999999996 45555520
Q ss_pred cccccccc-ceEEcCCCCCCCCC-cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhc-cCCC
Q 014835 84 IGIERLAS-CRLVLEDCSSLQSL-PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESL-GQLS 160 (417)
Q Consensus 84 ~~l~~l~~-~~L~L~~n~~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l-~~L~ 160 (417)
..+..+++ +.|++++|...+.+ |..+..+++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+ ..++
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 222 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc
Confidence 25677888 99999998544444 567888999999999999888888888899999999999999988877643 4588
Q ss_pred CCcEEEccCCCCChhhhhc-------------------------ccCCCCccccC-CcceeecCCCccc-cCcCccccc
Q 014835 161 SLKILVLSNIKRLPEYLQL-------------------------HLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEI 212 (417)
Q Consensus 161 ~L~~L~L~~n~~l~~~l~~-------------------------~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l 212 (417)
+|+.|++++|. +++.... ...+|..+..+ .|+.|++++|.++ +|...+..+
T Consensus 223 ~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l 300 (353)
T 2z80_A 223 SVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300 (353)
T ss_dssp TEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC
Confidence 88899988887 4421000 00134445667 8999999999988 776543333
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=2.1e-17 Score=160.00 Aligned_cols=188 Identities=18% Similarity=0.231 Sum_probs=116.3
Q ss_pred CCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC---------
Q 014835 3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF--------- 72 (417)
Q Consensus 3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l--------- 72 (417)
+|.+... +|++|+|++|.++.+| .+..+++|++|++++|.+.+ +|. +..+++|++|++++|..+..+
T Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 157 (347)
T 4fmz_A 81 ISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred chhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence 3443344 6777777777666665 36666677777776655433 333 555666666666665433222
Q ss_pred -------------------CCCCccccCCC-----cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc
Q 014835 73 -------------------TEIPSCNIDGG-----IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM 127 (417)
Q Consensus 73 -------------------p~l~~l~l~g~-----~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~ 127 (417)
+.+..++++++ ..+..+++ +.|++++|.+....+ +..+++|++|++++|.+..
T Consensus 158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred cEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence 22233333333 22334444 455555544333222 6678888899998888655
Q ss_pred cCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835 128 ILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD 205 (417)
Q Consensus 128 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp 205 (417)
..+ +..+++|++|++++|.++.++ .+..+++|+.|++++|. ++ . ++ .+..+ .|+.|++++|.++ .+
T Consensus 236 ~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~-~------~~-~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 236 LSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-IS-D------IS-VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CC-C------CG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred Ccc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc-cC-C------Ch-hhcCCCCCCEEECcCCcCCCcC
Confidence 433 788888999999888887774 57888888888888887 44 2 43 45666 8888888888876 44
Q ss_pred cC
Q 014835 206 PN 207 (417)
Q Consensus 206 ~~ 207 (417)
+.
T Consensus 304 ~~ 305 (347)
T 4fmz_A 304 ME 305 (347)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.9e-17 Score=158.20 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=133.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|++|+++++.++.+| .+..+++|++|+|++|.+.+ ++. +..+++|++|++++|. ++.++ .+..+
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-l~~~~-----------~~~~l 106 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-LKNVS-----------AIAGL 106 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-CSCCG-----------GGTTC
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-CCCch-----------hhcCC
Confidence 8999999999999988 58999999999999986554 555 8899999999999964 44443 56778
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
++ +.|++++|.+.. +|. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+..++. +..+++|+.|+++
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECC
Confidence 88 889999887654 443 7888899999999888665433 7788889999999998888776 8888899999999
Q ss_pred CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835 169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD 205 (417)
Q Consensus 169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp 205 (417)
+|. ++ . ++. +..+ .|+.|++++|.++ ++
T Consensus 182 ~n~-l~-~------~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 182 DNK-IS-D------ISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSC-CC-C------CGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred CCc-cC-c------Chh-hcCCCCCCEEEccCCccCccc
Confidence 888 54 2 443 6667 8899999999877 44
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=1.1e-16 Score=161.30 Aligned_cols=180 Identities=19% Similarity=0.137 Sum_probs=85.6
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC----CCcCCCCCccccCCC--
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI----FERFTEIPSCNIDGG-- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~----l~~lp~l~~l~l~g~-- 83 (417)
+|++|+|++|.++.+| ++.+++|++|++++|.+.+ +| ++++++|++|++++|.. +..++.+..++++++
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTL 139 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCC
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcc
Confidence 4444444444444443 4444444444444443332 22 44444445555444321 111122222333332
Q ss_pred --cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCC
Q 014835 84 --IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLS 160 (417)
Q Consensus 84 --~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~ 160 (417)
..++.+++ +.|++++|...+.+ .+..+++|++|++++|.+.+ +| ++.+++|+.|++++|.++.++ ++.++
T Consensus 140 ~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~ 212 (457)
T 3bz5_A 140 TEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNI 212 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred ceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCC
Confidence 12334444 44555444444433 24455555555555555443 33 455555555555555555442 55566
Q ss_pred CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835 161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE 211 (417)
Q Consensus 161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~ 211 (417)
+|+.|++++|+ ++ . +| +..+ .|+.|++++|.++ +|...+..
T Consensus 213 ~L~~L~Ls~N~-l~-~------ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 213 QLTFLDCSSNK-LT-E------ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp TCSEEECCSSC-CS-C------CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred CCCEEECcCCc-cc-c------cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 66666666665 33 1 44 4455 6777777777766 55443433
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.1e-17 Score=174.14 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=129.9
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.-...+|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..|..|.++++|++|+|++|......|
T Consensus 25 ~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p------- 97 (606)
T 3vq2_A 25 KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP------- 97 (606)
T ss_dssp SCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-------
T ss_pred cCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-------
Confidence 4555433478888888888887665 57788888888888877666667777788888888888764333334
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcc-hhcc
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVP-ESLG 157 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 157 (417)
..++++++ ++|++++|.+.+..|..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+..++ ..++
T Consensus 98 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 98 ---GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp ---TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred ---hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 46777777 888888887666555677788888888888887765 56777888888888888888876553 3454
Q ss_pred CCCCC----cEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 158 QLSSL----KILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 158 ~L~~L----~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.+++| ..|++++|. ++ . ++...... .|+.|++++|.++
T Consensus 175 ~l~~L~~~l~~L~l~~n~-l~-~------~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNP-ID-F------IQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp HHHHCTTCCCEEECTTCC-CC-E------ECTTTTTTCEEEEEEEESCCSC
T ss_pred hhhccccccceeeccCCC-cc-e------eCcccccCceeeeeeccCCccc
Confidence 44444 378888877 44 2 55565666 7888888887653
No 55
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=3e-17 Score=159.61 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=150.4
Q ss_pred CCCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccc-cCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835 1 MNFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISS-SIFKLKSLQSIEISNCPIFERFTEIPSC 78 (417)
Q Consensus 1 ~~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~-~l~~L~~L~~L~Ls~c~~l~~lp~l~~l 78 (417)
+++|.-+..++++|+|++|+|+.||.. |..+++|++|+|++|.+.+.+|. .|.++++|+.+.+.+++.+..++.
T Consensus 22 t~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~---- 97 (350)
T 4ay9_X 22 TEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP---- 97 (350)
T ss_dssp CSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT----
T ss_pred CccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc----
Confidence 356654433788889998888888874 78888899999988887777764 467788887766555566666653
Q ss_pred ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCC-CCCEEEeeccCCCCcchh
Q 014835 79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLE-ALETLIVDRTAMREVPES 155 (417)
Q Consensus 79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~-~L~~L~L~~n~l~~lp~~ 155 (417)
..+..+++ +.|++++|.+....+..+....++..|++.++.....+| ..+..+. .++.|++++|.++.+|..
T Consensus 98 -----~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 98 -----EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp -----TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred -----hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence 56788888 999999987766555556667778888887765455554 3455554 688999999999999888
Q ss_pred ccCCCCCcEEEccCCCCChhhhhcccCCCCcc-ccC-CcceeecCCCccc-cCcCccccccccc
Q 014835 156 LGQLSSLKILVLSNIKRLPEYLQLHLQLPENG-LEG-IPEYLRRSPRKLT-LDPNELSEIVKDG 216 (417)
Q Consensus 156 l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l-~~l-~L~~L~l~~n~L~-lp~~~L~~l~~~~ 216 (417)
+....+|+.|++++++.++ . +|... ..+ .|+.|++++|+|+ +|+..+..+..+.
T Consensus 173 ~f~~~~L~~l~l~~~n~l~-~------i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLE-E------LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp SSTTEEEEEEECTTCTTCC-C------CCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred hccccchhHHhhccCCccc-C------CCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 7788899999998765566 4 77654 556 9999999999998 8887666666443
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=1.7e-16 Score=163.83 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=61.1
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-----CC
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-----EI 75 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-----~l 75 (417)
.+|.....+|++|+|++|.++.+|+ .++.+++|++|+|++|.+.+..|..+.++++|++|+|++|. ++.+| .+
T Consensus 45 ~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L 123 (562)
T 3a79_B 45 HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASL 123 (562)
T ss_dssp SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTC
T ss_pred cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccC
Confidence 3454333367777777777776664 57777777777777776666666667777777777777753 33443 23
Q ss_pred CccccCCC--------cccccccc-ceEEcCCCCC
Q 014835 76 PSCNIDGG--------IGIERLAS-CRLVLEDCSS 101 (417)
Q Consensus 76 ~~l~l~g~--------~~l~~l~~-~~L~L~~n~~ 101 (417)
..|+++++ ..++++++ +.|++++|.+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 33444444 23555556 6666665544
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=168.63 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=105.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCC-----cCCCCCccccCCC-
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFE-----RFTEIPSCNIDGG- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~-----~lp~l~~l~l~g~- 83 (417)
+|+.|++++|.++.+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.... .+|.+..++++++
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 8888888888888888887777 8888888887654 5554 356666777766654332 3344444555444
Q ss_pred --------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCC-Cc
Q 014835 84 --------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMR-EV 152 (417)
Q Consensus 84 --------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~-~l 152 (417)
..+..+++ +.|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. ..
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 12334555 666666654433 23335555666666666655544433 34555556666666665553 33
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
|..+..+++|+.|++++|....+. +|..+..+ .|+.|++++|.++
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~------~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENF------LPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE------ECSCCTTCTTCCEEECTTSCCC
T ss_pred hhhhhcCCcCcEEECcCCcCcccc------chhhhhcccCCCEEECCCCccc
Confidence 445555556666666555521123 45455555 5555555555555
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4e-17 Score=155.92 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=136.3
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.+... +|++|+|++|.++.++. +..+++|++|+|++|.+. .+| .+..+++|++|++++|. +..++
T Consensus 55 ~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~-l~~~~------- 123 (308)
T 1h6u_A 55 TIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQ-ITDVT------- 123 (308)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSC-CCCCG-------
T ss_pred CchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCC-CCCch-------
Confidence 45666566 89999999999988887 888999999999987654 455 48888999999999864 34333
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
.+..+++ +.|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+..++. +..+
T Consensus 124 ----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 194 (308)
T 1h6u_A 124 ----PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASL 194 (308)
T ss_dssp ----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred ----hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCC
Confidence 4777888 8999998866543 33 7788999999999988665 343 8888999999999999988775 7888
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~ 206 (417)
++|++|+|++|. +.+ ++ .+..+ .|+.|++++|+++ .|.
T Consensus 195 ~~L~~L~L~~N~-l~~-------~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 195 PNLIEVHLKNNQ-ISD-------VS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCCEEECTTSC-CCB-------CG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCEEEccCCc-cCc-------cc-cccCCCCCCEEEccCCeeecCCe
Confidence 899999999988 542 44 36667 8899999988876 443
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3e-17 Score=146.37 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=73.1
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|++|++++|.++.+| .+..+++|++|++++|. ...++ .+..+++|++|++++|..-...+ ..+..+
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~----------~~l~~l 111 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKI----------PNLSGL 111 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGS----------CCCTTC
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccC----------hhhcCC
Confidence 6677777777777666 46667777777777662 33333 46666777777777653222122 233344
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
++ +.|++++|.+....|..+..+++|++|++++|...+.+| .+..+++|+.|++++|.+..++ .+..+++|+.|+++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence 44 444444444443344444444444444444444233333 2444444444444444444443 34444444444444
Q ss_pred CCC
Q 014835 169 NIK 171 (417)
Q Consensus 169 ~n~ 171 (417)
+|+
T Consensus 190 ~N~ 192 (197)
T 4ezg_A 190 SQT 192 (197)
T ss_dssp BC-
T ss_pred Ccc
Confidence 443
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=157.29 Aligned_cols=174 Identities=17% Similarity=0.114 Sum_probs=117.6
Q ss_pred cccEEEeecCCCc-ccCccc--cCCcCcceeeccccccCcccc----ccCCCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835 10 HVYTLELVKVGIK-ELPSSI--ECLSNLKKLYIVDCSMLESIS----SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG 82 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i--~~L~~L~~L~Ls~n~~~~~lp----~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g 82 (417)
+|++|+|++|.++ .+|..+ +.+++|++|+|++|.+.+..| ..+..+++|++|+|++|......+
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------- 162 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC--------- 162 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT---------
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH---------
Confidence 5889999999887 566666 888999999999988776544 345578899999999865433222
Q ss_pred Ccccccccc-ceEEcCCCCCCCC--C--cccccCCCCCcEEecccccCCccCCc----ccCCCCCCCEEEeeccCCCCc-
Q 014835 83 GIGIERLAS-CRLVLEDCSSLQS--L--PSSLCMFKSLTSLEIIDCQYFMILPD----ELGNLEALETLIVDRTAMREV- 152 (417)
Q Consensus 83 ~~~l~~l~~-~~L~L~~n~~l~~--l--p~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~L~~n~l~~l- 152 (417)
..+..+++ ++|+|++|.+.+. + +..+..+++|++|++++|.+. .++. .++.+++|++|+|++|.++.+
T Consensus 163 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 163 -EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp -TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred -HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 45667777 7777777765542 2 222356777777777777754 2222 245667777777777777554
Q ss_pred chhccCC---CCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc
Q 014835 153 PESLGQL---SSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT 203 (417)
Q Consensus 153 p~~l~~L---~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~ 203 (417)
|..+..+ ++|++|+|++|. ++ . +|..+. -.|+.|++++|.|+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~-l~-~------lp~~~~-~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAG-LE-Q------VPKGLP-AKLRVLDLSSNRLN 285 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSC-CC-S------CCSCCC-SCCSCEECCSCCCC
T ss_pred hhhHHhccCcCcCCEEECCCCC-CC-c------hhhhhc-CCCCEEECCCCcCC
Confidence 6555555 577777777777 44 3 665442 27777777777766
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=9.2e-18 Score=172.54 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=113.9
Q ss_pred CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|+....+|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..|..+.++++|++|+|++|.. ..++.
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~------ 91 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSS------ 91 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CSCCH------
T ss_pred cccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc-CccCH------
Confidence 567644448999999999999764 5699999999999999988877778899999999999999643 33331
Q ss_pred CCCcccccccc-ceEEcCCCCCCC-CCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCC-Ccchhc
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQ-SLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMR-EVPESL 156 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~l 156 (417)
..++.+++ ++|++++|.+.+ ..|..+..+++|++|++++|...+.+| ..++.+++|++|++++|.+. .+|..+
T Consensus 92 ---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 92 ---SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp ---HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ---HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 33666666 777777776554 345566667777777777766444444 45666777777777777664 355566
Q ss_pred cCCCCCcEEEccCCC
Q 014835 157 GQLSSLKILVLSNIK 171 (417)
Q Consensus 157 ~~L~~L~~L~L~~n~ 171 (417)
+.+++|+.|+++.|.
T Consensus 169 ~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 169 KSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCSEEEEEEEECSB
T ss_pred hccccCceEecccCc
Confidence 666666666666655
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3e-17 Score=166.82 Aligned_cols=182 Identities=14% Similarity=0.051 Sum_probs=150.1
Q ss_pred cccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCC----cCCCCCcccc
Q 014835 6 VTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFE----RFTEIPSCNI 80 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~----~lp~l~~l~l 80 (417)
+... +|++|+|++|.++.+++ ++.+++|++|+|++|.+.+ +|. .++|++|++++|.... .++.+..+++
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L 127 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV----GPSIETLHAANNNISRVSCSRGQGKKNIYL 127 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE----CTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred HhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC----CCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence 3344 99999999999997766 9999999999999986543 443 2788899988865432 2445555666
Q ss_pred CCC-------cccccccc-ceEEcCCCCCCCCCccccc-CCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC
Q 014835 81 DGG-------IGIERLAS-CRLVLEDCSSLQSLPSSLC-MFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE 151 (417)
Q Consensus 81 ~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~-~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~ 151 (417)
+++ ..+..+++ +.|+|++|.+.+..|..+. .+++|+.|+|++|.+.+. | ....+++|+.|+|++|.++.
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC
Confidence 665 46778899 9999999999888888876 799999999999997766 3 24469999999999999999
Q ss_pred cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 152 VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 152 lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
+|..+..+++|+.|+|++|. ++ . +|..+..+ .|+.|++++|.+.
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~-l~-~------lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNK-LV-L------IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSC-CC-E------ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCHhHcCCCCccEEEecCCc-Cc-c------cchhhccCCCCCEEEcCCCCCc
Confidence 98889999999999999999 55 3 78888888 9999999999976
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.5e-17 Score=155.15 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=142.2
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|+.|++++|.++.+|. +..+++|++|+|++|.+.+ ++. +.++++|++|++++|. +..+| .+..+
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~-----------~l~~l 111 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK-VKDLS-----------SLKDL 111 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCGG-----------GGTTC
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc-CCCCh-----------hhccC
Confidence 89999999999999975 8999999999999987665 444 8899999999999964 44443 57888
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
++ +.|++++|.+.. + ..+..+++|+.|++++|.+.+. ..++.+++|+.|++++|.++.++. +..+++|+.|+|+
T Consensus 112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECC
Confidence 89 999999997655 4 4678899999999999987664 568899999999999999988876 8999999999999
Q ss_pred CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
+|. ++ . +| .+..+ .|+.|++++|+++ .|..
T Consensus 187 ~N~-i~-~------l~-~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 187 KNH-IS-D------LR-ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp SSC-CC-B------CG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred CCc-CC-C------Ch-hhccCCCCCEEECcCCcccCCccc
Confidence 998 55 2 55 47777 9999999999976 4443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=3.2e-17 Score=157.21 Aligned_cols=178 Identities=15% Similarity=0.047 Sum_probs=146.1
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCC----CcCCCCCccccCCC--
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF----ERFTEIPSCNIDGG-- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l----~~lp~l~~l~l~g~-- 83 (417)
+|++|+|++|.++.+++ +..+++|++|+|++|.+.+ +| ..++|++|++++|... ..++.+..++++++
T Consensus 59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI 132 (317)
T ss_dssp TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCC
T ss_pred cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCC
Confidence 89999999999997776 9999999999999986543 33 2378888888886532 23445555666665
Q ss_pred -----cccccccc-ceEEcCCCCCCCCCcccc-cCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhc
Q 014835 84 -----IGIERLAS-CRLVLEDCSSLQSLPSSL-CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESL 156 (417)
Q Consensus 84 -----~~l~~l~~-~~L~L~~n~~l~~lp~~l-~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 156 (417)
..+..+++ +.|++++|.+.+..|..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.++.+|..+
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGG
T ss_pred CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhh
Confidence 36677889 999999998887767766 4789999999999997665 3 3445999999999999999999889
Q ss_pred cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 157 GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 157 ~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
..+++|+.|+|++|. ++ . +|..+..+ .|+.|++++|++.
T Consensus 211 ~~l~~L~~L~L~~N~-l~-~------l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 QSAAGVTWISLRNNK-LV-L------IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGTTCSEEECTTSC-CC-E------ECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCcccEEECcCCc-cc-c------hhhHhhcCCCCCEEEccCCCcc
Confidence 999999999999998 55 4 88888888 9999999999976
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=5.1e-17 Score=171.47 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=139.7
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.....+|++|+|++|.++.+|.. ++.+++|++|+|++|.+.+..|..++++++|++|+|++| .+..+|.
T Consensus 18 ~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~------ 90 (680)
T 1ziw_A 18 QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSD------ 90 (680)
T ss_dssp SCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCT------
T ss_pred ccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccCh------
Confidence 46765445899999999999988874 999999999999999888888888999999999999996 5556663
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hc--
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SL-- 156 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l-- 156 (417)
..+..+++ ++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.+..++. .+
T Consensus 91 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 91 ---KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp ---TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred ---hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 46888999 999999998876667889999999999999999988888889999999999999999977654 33
Q ss_pred cCCCCCcEEEccCCCCChhh
Q 014835 157 GQLSSLKILVLSNIKRLPEY 176 (417)
Q Consensus 157 ~~L~~L~~L~L~~n~~l~~~ 176 (417)
..+++|+.|++++|. +++.
T Consensus 168 ~~~~~L~~L~L~~n~-l~~~ 186 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ-IKEF 186 (680)
T ss_dssp GTTCEESEEECTTCC-CCCB
T ss_pred cccccccEEECCCCc-cccc
Confidence 356899999999997 5433
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=175.73 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=148.7
Q ss_pred CCCCcccCcccEEEeecCCCccc-CccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~ 79 (417)
.+|. ...+|++|+|++|.|+.+ |..++.+++|++|+|++|...+.+ |..+.++++|++|+|++|......|
T Consensus 18 ~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p------ 90 (844)
T 3j0a_A 18 QVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP------ 90 (844)
T ss_dssp CCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT------
T ss_pred CCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH------
Confidence 5677 333899999999999976 557999999999999998777777 7789999999999999976544445
Q ss_pred cCCCcccccccc-ceEEcCCCCCCCCCccc--ccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCC-Ccch
Q 014835 80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSS--LCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMR-EVPE 154 (417)
Q Consensus 80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~--l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~-~lp~ 154 (417)
..+..+++ ++|+|++|.+.+.+|.. +..+++|++|+|++|.+.+..+ ..++++++|++|++++|.+. ..|.
T Consensus 91 ----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 91 ----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp ----TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ----hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 57888999 99999999888766665 8899999999999999877654 57899999999999999985 4556
Q ss_pred hccCC--CCCcEEEccCCCCChhhhhcccCCCCccccC-------CcceeecCCCccc
Q 014835 155 SLGQL--SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-------IPEYLRRSPRKLT 203 (417)
Q Consensus 155 ~l~~L--~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-------~L~~L~l~~n~L~ 203 (417)
.+..+ ++|+.|++++|. +.+. .|..+... .|+.|++++|.++
T Consensus 167 ~l~~l~~~~L~~L~L~~n~-l~~~------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANS-LYSR------VSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp GGHHHHHCSSCCCEECCSB-SCCC------CCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred HcccccCCccceEECCCCc-cccc------cccchhhcCCccccCceeEEecCCCcCc
Confidence 67666 889999999998 4434 44443333 4899999998654
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=164.89 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=80.4
Q ss_pred cccEEEeecCCCcccC-ccccCC---cCcceeecccc----------------------ccCccccccCCCCCCCcEEee
Q 014835 10 HVYTLELVKVGIKELP-SSIECL---SNLKKLYIVDC----------------------SMLESISSSIFKLKSLQSIEI 63 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp-~~i~~L---~~L~~L~Ls~n----------------------~~~~~lp~~l~~L~~L~~L~L 63 (417)
+|+.+++++|.+ .+| ..+..+ .+|+.|++++| .+.+.+|..++++++|++|++
T Consensus 277 ~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 277 ALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 677777777766 566 233332 34555555554 444434444444444444444
Q ss_pred ecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccc-ccCCCCCcEEecccccCCccCCcccCCCCCCCE
Q 014835 64 SNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSS-LCMFKSLTSLEIIDCQYFMILPDELGNLEALET 141 (417)
Q Consensus 64 s~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 141 (417)
++|.. ..++.++ ..+..+++ +.|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+. ++|+.
T Consensus 356 ~~N~l-~~l~~~~-------~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 356 QMNQL-KELSKIA-------EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp CSSCC-CBHHHHH-------HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred cCCcc-Cccccch-------HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 44321 1111000 22444444 55555555444434432 34445555555555554444444332 44555
Q ss_pred EEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCcc
Q 014835 142 LIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKL 202 (417)
Q Consensus 142 L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L 202 (417)
|++++|.++.+|..+..+++|++|+|++|+ ++ . +|.. +..+ .|+.|++++|++
T Consensus 426 L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~-~------l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQ-LK-S------VPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCCCCGGGGGCTTCCEEECCSSC-CC-C------CCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcccccchhhhcCCCCCEEECCCCc-CC-c------cCHHHhccCCcccEEECcCCCC
Confidence 555555555555444455555555555554 32 2 4433 3334 455555555544
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=2.6e-16 Score=158.54 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=150.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC----CCcCCCCCccccCCC--
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI----FERFTEIPSCNIDGG-- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~----l~~lp~l~~l~l~g~-- 83 (417)
+|++|++++|.++.+| .++.+++|++|+|++|.+.+ +| ++.+++|++|++++|.. +..++.+..++++++
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcC
Confidence 8999999999999998 59999999999999987665 45 88999999999999753 233445555666666
Q ss_pred --cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCC
Q 014835 84 --IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLS 160 (417)
Q Consensus 84 --~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~ 160 (417)
..+..+++ +.|++++|.+.+ ++ ++.+++|++|++++|...+.+ .++.+++|+.|++++|.++.+| +..++
T Consensus 119 ~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~ 191 (457)
T 3bz5_A 119 TKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK 191 (457)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT
T ss_pred CeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCC
Confidence 34677888 899999887665 43 778899999999998777766 4788999999999999998887 78899
Q ss_pred CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccccccccccccc
Q 014835 161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIVKDGWMKQS 221 (417)
Q Consensus 161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~~~~~~~n~ 221 (417)
+|+.|++++|. ++ . + .+..+ .|+.|++++|.++ +|...+..+.......|.
T Consensus 192 ~L~~L~l~~N~-l~-~------~--~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 192 LLNRLNCDTNN-IT-K------L--DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP 244 (457)
T ss_dssp TCCEEECCSSC-CS-C------C--CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred CCCEEECcCCc-CC-e------e--ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence 99999999998 55 2 3 36677 9999999999988 775544444433333333
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=1.4e-16 Score=167.99 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=71.5
Q ss_pred ccEEEeecCCCccc-CccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835 11 VYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID 81 (417)
Q Consensus 11 L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~ 81 (417)
|+.|++++|.++.+ |..+..+++|++|+|++|.+.+.+| ..+.++++|++|++++|.. +..+|.+..+.+.
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 44444444444433 2335555555555555555444443 3445555555555555431 1122223323332
Q ss_pred CC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC----C----cccCCCCCCCEEE
Q 014835 82 GG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL----P----DELGNLEALETLI 143 (417)
Q Consensus 82 g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l----p----~~l~~l~~L~~L~ 143 (417)
++ ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+.. | ..++.+++|+.|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 22 22334444 45555554444333334444455555555554433221 1 1134445555555
Q ss_pred eeccCCCCcch-hccCCCCCcEEEccCCC
Q 014835 144 VDRTAMREVPE-SLGQLSSLKILVLSNIK 171 (417)
Q Consensus 144 L~~n~l~~lp~-~l~~L~~L~~L~L~~n~ 171 (417)
+++|.++.+|. .+..+++|+.|+|++|.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 55555544443 24445555555555544
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.1e-16 Score=161.51 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|++|++++|.++.++. +..+++|++|++++|.+.+..| ++.+++|++|++++|. +..+ ..+..+
T Consensus 178 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-----------~~l~~l 242 (466)
T 1o6v_A 178 TLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDI-----------GTLASL 242 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC-----------GGGGGC
T ss_pred CCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccc-----------hhhhcC
Confidence 45555555555554432 4455555555555544433322 3445555555555542 1111 234455
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
++ +.|++++|.+.+..| +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++. +..+++|+.|+|+
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLY 317 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECc
Confidence 55 556666554443322 4555555666665555443322 4555555555555555554443 4555555555555
Q ss_pred CCC
Q 014835 169 NIK 171 (417)
Q Consensus 169 ~n~ 171 (417)
+|.
T Consensus 318 ~n~ 320 (466)
T 1o6v_A 318 FNN 320 (466)
T ss_dssp SSC
T ss_pred CCc
Confidence 555
No 71
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1e-16 Score=143.95 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=109.7
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.-+.++.+++.++++|..+ .++|++|+|++|.+.+..+..+.++++|++|++++| .++.+|. ..+..+
T Consensus 8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~l 75 (208)
T 2o6s_A 8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPN---------GVFNKL 75 (208)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT---------TTTTTC
T ss_pred CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccCh---------hhcCCC
Confidence 4567888899999999765 468999999998777655566788999999999995 4445543 345667
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L 167 (417)
++ ++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 77 7777777766554445566777777777777776665555567777777777777777666653 667777777777
Q ss_pred cCCC
Q 014835 168 SNIK 171 (417)
Q Consensus 168 ~~n~ 171 (417)
++|.
T Consensus 156 ~~N~ 159 (208)
T 2o6s_A 156 HDNP 159 (208)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 7776
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=7.9e-17 Score=166.43 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=75.9
Q ss_pred CCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCccC
Q 014835 53 FKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMIL 129 (417)
Q Consensus 53 ~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~l 129 (417)
..+++|++|++++|......| ..+..+++ +.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF----------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT----------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred cCCCCceEEECCCCccccchh----------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 455666666666654433333 34555666 666666665443 23445556666666666666655544
Q ss_pred Cc-ccCCCCCCCEEEeeccCC-CCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835 130 PD-ELGNLEALETLIVDRTAM-REVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD 205 (417)
Q Consensus 130 p~-~l~~l~~L~~L~L~~n~l-~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp 205 (417)
|. .+..+++|+.|++++|.+ +.+|..+. ++|+.|+|++|. ++ . +|..+..+ .|+.|++++|.++ +|
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~-~------ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IM-S------IPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CC-C------CCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-Cc-c------cChhhcCCCCCCEEECCCCCCCCCC
Confidence 43 355566666666666666 33333222 466666666665 33 3 56555555 6666666666665 55
Q ss_pred cC
Q 014835 206 PN 207 (417)
Q Consensus 206 ~~ 207 (417)
+.
T Consensus 490 ~~ 491 (562)
T 3a79_B 490 DG 491 (562)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=170.01 Aligned_cols=179 Identities=18% Similarity=0.134 Sum_probs=105.5
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccc--cccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESI--SSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE 87 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~l--p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~ 87 (417)
+|+.|++++|.+...... ..+++|++|++++|.+.+.. |..+.++++|++|++++|. +..+| ..+.
T Consensus 326 ~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~----------~~~~ 393 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS----------SNFL 393 (570)
T ss_dssp SCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEE----------EEEE
T ss_pred ccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccc----------cccc
Confidence 788888888877643332 67788888888887665443 5667778888888888863 22222 2244
Q ss_pred cccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC--CcchhccCCCCCc
Q 014835 88 RLAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR--EVPESLGQLSSLK 163 (417)
Q Consensus 88 ~l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~ 163 (417)
.+++ +.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 5555 556665555444333 34455556666666666555555555555666666666665553 3555555556666
Q ss_pred EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
.|+|++|. +++. .|..+..+ .|+.|++++|.++ +|+.
T Consensus 474 ~L~l~~n~-l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 474 FLDLSQCQ-LEQL------SPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp EEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred EEECCCCc-cccC------ChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 66666555 3323 34455555 5666666666555 4443
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=171.73 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=44.6
Q ss_pred CCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-C
Q 014835 114 SLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-I 191 (417)
Q Consensus 114 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~ 191 (417)
+|+.|++++|.+.+..|..++.+++|+.|+|++|.+..+ |..+..+++|++|+|++|. +.+. .|..+..+ .
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~~~~l~~ 339 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGEL------YSSNFYGLPK 339 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCC------CSCSCSSCTT
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCcc------CHHHhcCCCC
Confidence 444455555444444455555566666666666666443 3455566666666666665 3322 34444445 5
Q ss_pred cceeecCCCccc
Q 014835 192 PEYLRRSPRKLT 203 (417)
Q Consensus 192 L~~L~l~~n~L~ 203 (417)
|+.|++++|.++
T Consensus 340 L~~L~L~~N~i~ 351 (844)
T 3j0a_A 340 VAYIDLQKNHIA 351 (844)
T ss_dssp CCEEECCSCCCC
T ss_pred CCEEECCCCCCC
Confidence 555555555554
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=2.8e-16 Score=151.99 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=146.2
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-----CCcCCCC
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-----FERFTEI 75 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-----l~~lp~l 75 (417)
.+|.+... +|++|++++|.++.+|. +..+++|++|++++|.+. .+| .+.++++|++|++++|.. +..++.+
T Consensus 58 ~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L 134 (347)
T 4fmz_A 58 SIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISPLANLTKM 134 (347)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTC
T ss_pred cchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccCchhhccCCce
Confidence 46666666 99999999999999988 999999999999998655 455 488999999999999753 2234455
Q ss_pred CccccCCC------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccC
Q 014835 76 PSCNIDGG------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTA 148 (417)
Q Consensus 76 ~~l~l~g~------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~ 148 (417)
..++++++ ..+..+++ +.|++++|.+....+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCC
Confidence 55777766 45777888 999999987655433 77899999999999986543 33 7788899999999998
Q ss_pred CCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 149 MREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 149 l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
+..++. +..+++|+.|++++|. ++ . ++. +..+ .|+.|++++|.++
T Consensus 211 l~~~~~-~~~~~~L~~L~l~~n~-l~-~------~~~-~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 211 ITDITP-VANMTRLNSLKIGNNK-IT-D------LSP-LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSC-CC-C------CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCch-hhcCCcCCEEEccCCc-cC-C------Ccc-hhcCCCCCEEECCCCccC
Confidence 877765 7888899999999988 44 2 443 6666 8888999888876
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.2e-16 Score=144.29 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=104.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
..+.++.+++.++.+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|. ++.+|.
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~--------------- 81 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPV--------------- 81 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---------------
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcCh---------------
Confidence 56789999999999998665 899999999998888888889999999999999963 343332
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccC
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~ 169 (417)
..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++
T Consensus 82 -----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 82 -----------------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS
T ss_pred -----------------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC
Confidence 234456666666666666555444455666666666666666666666666666666666666
Q ss_pred CCCChhhhhcccCCCC-ccccC-CcceeecCCCccc
Q 014835 170 IKRLPEYLQLHLQLPE-NGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 170 n~~l~~~l~~~l~lp~-~l~~l-~L~~L~l~~n~L~ 203 (417)
|. ++ . +|. .+..+ .|+.|++++|++.
T Consensus 145 N~-l~-~------~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 145 NQ-LK-S------IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SC-CC-C------CCTTTTTTCTTCCEEECTTSCBC
T ss_pred Cc-CC-c------cCHHHHhCCCCCCEEEeeCCCcc
Confidence 65 33 1 332 34445 6666666666644
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4e-16 Score=143.13 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=146.7
Q ss_pred cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835 12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS 91 (417)
Q Consensus 12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~ 91 (417)
+.+++....++++|. +. .+|++|+|++|.+.+..+..+.++++|++|++++|..++.++. ..+..+++
T Consensus 14 ~~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---------~~f~~l~~ 81 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES---------HSFYNLSK 81 (239)
T ss_dssp STTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT---------TTEESCTT
T ss_pred CcceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH---------hHcCCCcC
Confidence 334444555889998 54 4899999999887766666799999999999999766777774 57888999
Q ss_pred -ceEEcCC-CCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCC---EEEeecc-CCCCcch-hccCCCCCc-
Q 014835 92 -CRLVLED-CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE---TLIVDRT-AMREVPE-SLGQLSSLK- 163 (417)
Q Consensus 92 -~~L~L~~-n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~---~L~L~~n-~l~~lp~-~l~~L~~L~- 163 (417)
+.|++++ |.+....+..+..+++|++|++++|.+.+ +|. ++.+++|+ .|++++| .++.+|. .+..+++|+
T Consensus 82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 9999998 66655555678899999999999999766 776 88899998 9999999 9988875 588999999
Q ss_pred EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc-cc-cCcCccccc
Q 014835 164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK-LT-LDPNELSEI 212 (417)
Q Consensus 164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~-L~-lp~~~L~~l 212 (417)
.|++++|. ++ . +|...... .|+.|++++|+ ++ +|+..+..+
T Consensus 160 ~L~l~~n~-l~-~------i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 160 TLKLYNNG-FT-S------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp EEECCSCC-CC-E------ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred EEEcCCCC-Cc-c------cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence 99999998 55 4 77777777 99999999995 88 877655544
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=2.6e-16 Score=142.84 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=93.7
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.-+.+++++++++++|..+. ++|+.|+|++|.+.+..+..+..+++|++|+|++|..-...| ..+..+
T Consensus 12 ~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----------~~~~~l 79 (220)
T 2v9t_B 12 SNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----------DAFQGL 79 (220)
T ss_dssp ETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT----------TTTTTC
T ss_pred CCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH----------HHhhCC
Confidence 45788999999999998765 789999999987776666678899999999999964322222 344555
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L 167 (417)
++ +.|+|++|.+....+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.++.++. .+..+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 55 555555554443222334455555555555555555555555555555555555555544443 3455555555555
Q ss_pred cCCC
Q 014835 168 SNIK 171 (417)
Q Consensus 168 ~~n~ 171 (417)
++|+
T Consensus 160 ~~N~ 163 (220)
T 2v9t_B 160 AQNP 163 (220)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5554
No 79
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=3.7e-16 Score=157.73 Aligned_cols=161 Identities=18% Similarity=0.306 Sum_probs=78.9
Q ss_pred CCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-----CCcCCCCC
Q 014835 3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-----FERFTEIP 76 (417)
Q Consensus 3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-----l~~lp~l~ 76 (417)
+|.+... +|++|+|++|.++.+|+ ++.+++|++|++++|.+.+.. . +.++++|++|++++|.. +..++.+.
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 137 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-P-LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred CcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh-h-hcCCCCCCEEECCCCCCCCChHHcCCCCCC
Confidence 4554444 67777777776666665 666666666666665444332 2 55555666666555421 11112222
Q ss_pred ccccCCC--------------------------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC
Q 014835 77 SCNIDGG--------------------------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL 129 (417)
Q Consensus 77 ~l~l~g~--------------------------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l 129 (417)
.++++++ ..+..+++ +.|++++|.+.. ++ .+..+++|++|++++|.+.+..
T Consensus 138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred EEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCcccccc
Confidence 2222211 22444555 566666654332 22 2445555666665555544433
Q ss_pred CcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 130 PDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 130 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
| ++.+++|+.|++++|.+..++ .+..+++|+.|++++|.
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred c--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc
Confidence 2 334445555555555444442 23444444444444444
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=156.31 Aligned_cols=174 Identities=17% Similarity=0.145 Sum_probs=142.2
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCC-CCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~-~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
.-+.+++++++++.+|..+. ..|+.|+|++|.+.+..+..+. ++++|++|+|++| .+..++. ..+..
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~---------~~~~~ 86 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS---------EAFVP 86 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECT---------TTTTT
T ss_pred CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccCh---------hhccC
Confidence 45789999999999998664 4689999999877766666666 8999999999995 4555543 46888
Q ss_pred ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhc----cCCCCCc
Q 014835 89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESL----GQLSSLK 163 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l----~~L~~L~ 163 (417)
+++ +.|+|++|.+....+..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|.+..+|..+ ..+++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 899 99999999877666667889999999999999998888889999999999999999999998765 5799999
Q ss_pred EEEccCCCCChhhhhcccCCCC-ccccC-C--cceeecCCCccc
Q 014835 164 ILVLSNIKRLPEYLQLHLQLPE-NGLEG-I--PEYLRRSPRKLT 203 (417)
Q Consensus 164 ~L~L~~n~~l~~~l~~~l~lp~-~l~~l-~--L~~L~l~~n~L~ 203 (417)
.|+|++|. ++ . +|. .+..+ . ++.|++++|++.
T Consensus 167 ~L~L~~N~-l~-~------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNK-LK-K------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSC-CC-C------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCC-CC-c------cCHHHhhhccHhhcceEEecCCCcc
Confidence 99999998 55 2 553 33444 3 588999999876
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=142.92 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=102.8
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
.-+.+++++|.++++|..+. ..+++|+|++|.+.+..| ..+.++++|++|+|++|. ++.++. ..+..
T Consensus 12 ~~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~---------~~~~~ 79 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE---------GAFEG 79 (220)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECT---------TTTTT
T ss_pred CCCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECH---------HHhCC
Confidence 55789999999999998764 467899999987766544 347889999999999953 444432 34556
Q ss_pred ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEE
Q 014835 89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILV 166 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~ 166 (417)
+++ +.|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 666 6666666665555555566666666666666666665566666666666666666666544 45566666666666
Q ss_pred ccCCC
Q 014835 167 LSNIK 171 (417)
Q Consensus 167 L~~n~ 171 (417)
|++|+
T Consensus 160 L~~N~ 164 (220)
T 2v70_A 160 LLANP 164 (220)
T ss_dssp CCSCC
T ss_pred ecCcC
Confidence 66665
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.3e-16 Score=143.18 Aligned_cols=166 Identities=15% Similarity=0.162 Sum_probs=135.3
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.....+|++|+|++|.++.+|.. ++.+++|++|+|++|.+.+..+..+..+++|++|+|++| .++.+|.
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------ 93 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN------ 93 (208)
T ss_dssp SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCH------
Confidence 45544433899999999999988875 789999999999998777655566789999999999996 4555553
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
..+..+++ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+
T Consensus 94 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~ 164 (208)
T 2o6s_A 94 ---GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTC 164 (208)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCT
T ss_pred ---hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCC
Confidence 45788999 99999999877666666889999999999999988766667899999999999999763 345
Q ss_pred CCCcEEEccCCCCChhhhhcccCCCCccccC
Q 014835 160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG 190 (417)
Q Consensus 160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l 190 (417)
++|+.|+++.|. +++. +|..+..+
T Consensus 165 ~~l~~L~~~~n~-~~g~------ip~~~~~l 188 (208)
T 2o6s_A 165 PGIRYLSEWINK-HSGV------VRNSAGSV 188 (208)
T ss_dssp TTTHHHHHHHHH-CTTT------BBCTTSSB
T ss_pred CCHHHHHHHHHh-CCce------eeccCccc
Confidence 689999999888 6656 77766555
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=8.2e-17 Score=167.62 Aligned_cols=182 Identities=17% Similarity=0.171 Sum_probs=114.4
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.-+..++++|+|++|.|+.+|+ +|..+++|++|+|++|.+.+..|.+|.++++|++|+|++| .++.+|.
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~------ 117 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL------ 117 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG------
T ss_pred ccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH------
Confidence 4555443467778888777777765 4777777888888777665555556777777888888774 3555553
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcc-hhcc
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVP-ESLG 157 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 157 (417)
..+.++++ ++|+|++|.+.+..+..++.+++|++|++++|.+.. .+|..++.+++|++|++++|.+..++ ..+.
T Consensus 118 ---~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 118 ---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ---GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ---HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 45667777 777777776655444557777777777777777654 35666677777777777777775543 3443
Q ss_pred CCCC----CcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835 158 QLSS----LKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK 201 (417)
Q Consensus 158 ~L~~----L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~ 201 (417)
.+.+ +..++++.|. +. . ++...... .+..+++.+|.
T Consensus 195 ~L~~l~~~~~~~~ls~n~-l~-~------i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNP-MN-F------IQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp HHHTCTTCCCEEECTTCC-CC-E------ECTTTTTTCEEEEEEEESCC
T ss_pred chhhhhhhhhhhhcccCc-cc-c------cCcccccchhhhhhhhhccc
Confidence 3333 2356666665 33 1 33333333 44555555543
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=161.45 Aligned_cols=190 Identities=12% Similarity=0.091 Sum_probs=120.3
Q ss_pred cccC-cccEEEeecCCCcc-----cCccccCCcCcceeeccccccCccccccC-----CCCCCCcEEeeecCCCCCcCCC
Q 014835 6 VTSC-HVYTLELVKVGIKE-----LPSSIECLSNLKKLYIVDCSMLESISSSI-----FKLKSLQSIEISNCPIFERFTE 74 (417)
Q Consensus 6 ~~~~-~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l-----~~L~~L~~L~Ls~c~~l~~lp~ 74 (417)
+... +|+.|+++++.++. ++..+ .+++|++|++++|.+.+.+|..+ +++++|+.+++++|.. .+|.
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred hccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence 3344 67777777766551 22111 23577777777777666677666 6677777777776544 4441
Q ss_pred -----------CCccccCCC-----cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc--cCCcccCC
Q 014835 75 -----------IPSCNIDGG-----IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM--ILPDELGN 135 (417)
Q Consensus 75 -----------l~~l~l~g~-----~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~--~lp~~l~~ 135 (417)
+..+.++++ .....+++ +.|++++|.+.+.+|..+..+++|++|++++|.+.+ .+|..++.
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 333444444 11256667 778888887777777777777888888888877665 55666777
Q ss_pred CCCCCEEEeeccCCCC-cchh-ccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCc
Q 014835 136 LEALETLIVDRTAMRE-VPES-LGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 136 l~~L~~L~L~~n~l~~-lp~~-l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~ 206 (417)
+++|++|++++|.+.. +|.. +..+++|+.|++++|. +++. +|..+. -.|+.|++++|.++ +|.
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~l~-~~L~~L~Ls~N~l~~ip~ 438 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDT------IFRCLP-PRIKVLDLHSNKIKSIPK 438 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGG------GGGSCC-TTCCEEECCSSCCCCCCG
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcc------hhhhhc-ccCCEEECCCCcccccch
Confidence 7888888888887755 7653 6667777777777777 4333 332221 25666666666665 554
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.9e-16 Score=164.72 Aligned_cols=169 Identities=20% Similarity=0.220 Sum_probs=140.0
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|+.|+|++|.+..+|. +..+++|+.|+|++|.+.+. |. +..+++|+.|+|++|. +..+| .+..+
T Consensus 44 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~-l~~l~-----------~l~~l 108 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENK-IKDLS-----------SLKDL 108 (605)
T ss_dssp TCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC-CCCCT-----------TSTTC
T ss_pred CCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCC-CCCCh-----------hhccC
Confidence 89999999999999884 89999999999999876654 44 8899999999999963 44443 56778
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
++ +.|+|++|.+.. + ..+..+++|+.|+|++|.+.+. ..++.+++|+.|+|++|.+..++. +..+++|+.|+|+
T Consensus 109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 183 (605)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECc
Confidence 88 999999997665 4 4578899999999999987664 568899999999999999987766 8999999999999
Q ss_pred CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835 169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
+|. +. . +| .+..+ .|+.|++++|.+. .|..
T Consensus 184 ~N~-i~-~------l~-~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 184 KNH-IS-D------LR-ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp SSC-CC-B------CG-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCC-CC-C------Ch-HHccCCCCCEEEccCCcCcCCccc
Confidence 998 55 2 54 57777 9999999999977 5544
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=8.4e-16 Score=158.39 Aligned_cols=168 Identities=19% Similarity=0.254 Sum_probs=90.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC----CccccCCC--
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI----PSCNIDGG-- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l----~~l~l~g~-- 83 (417)
+|+.|+|++|.|+.+|..+. ++|++|+|++|.+. .+| ..+++|++|+|++| .++.+|.+ ..|+++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~ip~l~~~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLSTLPELPASLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCCcchhhcCCCEEECCCCcC
Confidence 68888888888888887663 78888888887655 677 35788888888885 44446631 11222222
Q ss_pred cccc-cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCC
Q 014835 84 IGIE-RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSS 161 (417)
Q Consensus 84 ~~l~-~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~ 161 (417)
..+. .+++ +.|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|. +. ++|+.|+|++|.|+.+|. +.. +
T Consensus 133 ~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~ 201 (571)
T 3cvr_A 133 TMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--R 201 (571)
T ss_dssp SCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----
T ss_pred CCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--h
Confidence 0000 2334 555555554332 343 34455555555554333 443 33 455555555555555544 332 3
Q ss_pred C-------cEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 162 L-------KILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 162 L-------~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
| +.|+|++|. ++ . +|..+..+ .|+.|++++|+|+
T Consensus 202 L~~~~~~L~~L~Ls~N~-l~-~------lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENR-IT-H------IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ------CCEEEECCSSC-CC-C------CCGGGGGSCTTEEEECCSSSCC
T ss_pred hhcccccceEEecCCCc-ce-e------cCHHHhcCCCCCEEEeeCCcCC
Confidence 4 555555554 32 2 45444445 5555555555544
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=2.3e-16 Score=140.58 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=129.0
Q ss_pred ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCc
Q 014835 28 IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLP 106 (417)
Q Consensus 28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp 106 (417)
.+.+++|++|++++|.+. .+| .+..+++|++|++++| .+..+ ..+..+++ +.|++++|.+....|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-----------NPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-----------GGGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-----------hhhhcCCCCCEEEeECCccCcccC
Confidence 467889999999997655 677 5889999999999997 44433 36778889 999999998887788
Q ss_pred ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccC-CCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCC
Q 014835 107 SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTA-MREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE 185 (417)
Q Consensus 107 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~ 185 (417)
..+..+++|++|++++|.+.+..|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|. ++ . ++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~-~------~~- 175 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VH-D------YR- 175 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CC-C------CT-
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-Cc-C------hH-
Confidence 889999999999999999988888889999999999999998 88887 68999999999999998 55 2 55
Q ss_pred ccccC-CcceeecCCCccc
Q 014835 186 NGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 186 ~l~~l-~L~~L~l~~n~L~ 203 (417)
.+..+ .|+.|++++|++.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 67778 9999999999853
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=148.50 Aligned_cols=174 Identities=17% Similarity=0.144 Sum_probs=140.3
Q ss_pred cccEEEeecCCCcc-cC----ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCc--CCCCCccccCC
Q 014835 10 HVYTLELVKVGIKE-LP----SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER--FTEIPSCNIDG 82 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~-lp----~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~--lp~l~~l~l~g 82 (417)
+|++|+|++|.++. .| ..+..+++|++|+|++|.+.+..|..++.+++|++|+|++|...+. ++.
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------- 189 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-------- 189 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT--------
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH--------
Confidence 99999999999984 33 2356799999999999998887788899999999999999864331 111
Q ss_pred Ccccccccc-ceEEcCCCCCCCCCcc----cccCCCCCcEEecccccCCccCCcccCCC---CCCCEEEeeccCCCCcch
Q 014835 83 GIGIERLAS-CRLVLEDCSSLQSLPS----SLCMFKSLTSLEIIDCQYFMILPDELGNL---EALETLIVDRTAMREVPE 154 (417)
Q Consensus 83 ~~~l~~l~~-~~L~L~~n~~l~~lp~----~l~~l~~L~~L~L~~n~~~~~lp~~l~~l---~~L~~L~L~~n~l~~lp~ 154 (417)
...+..+++ ++|+|++|.+. .+|. .+..+++|++|+|++|.+.+..|..++.+ ++|++|++++|.++.+|.
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence 023457788 99999999764 3343 24678999999999999888888777776 699999999999999998
Q ss_pred hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 155 SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 155 ~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.+. ++|+.|+|++|+ ++ . +|. +..+ .|+.|++++|+++
T Consensus 269 ~~~--~~L~~L~Ls~N~-l~-~------~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 269 GLP--AKLRVLDLSSNR-LN-R------APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC--SCCSCEECCSCC-CC-S------CCC-TTSCCCCSCEECSSTTTS
T ss_pred hhc--CCCCEEECCCCc-CC-C------Cch-hhhCCCccEEECcCCCCC
Confidence 774 899999999999 55 2 553 5666 9999999999875
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=3.5e-16 Score=160.73 Aligned_cols=171 Identities=18% Similarity=0.127 Sum_probs=140.1
Q ss_pred cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835 12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS 91 (417)
Q Consensus 12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~ 91 (417)
...+.+++.++++|..+. ++|++|+|++|.+.+..|..+.++++|++|++++|.. ..++. ..+..+++
T Consensus 8 ~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~---------~~~~~l~~ 75 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEG---------DAFYSLGS 75 (549)
T ss_dssp SEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECT---------TTTTTCTT
T ss_pred ceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccCh---------hhcccccc
Confidence 347888899999999765 7999999999988777788899999999999999754 44432 57889999
Q ss_pred -ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccC-CCCcc-hhccCCCCCcEEEc
Q 014835 92 -CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTA-MREVP-ESLGQLSSLKILVL 167 (417)
Q Consensus 92 -~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~-l~~lp-~~l~~L~~L~~L~L 167 (417)
++|++++|.+.+..|..++.+++|++|++++|.+.+ ..|..++++++|++|++++|. ++.+| ..+..+++|++|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 999999998887777789999999999999999876 467789999999999999998 57787 57999999999999
Q ss_pred cCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835 168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK 201 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~ 201 (417)
++|. +++. +|..+..+ .|+.|+++.|.
T Consensus 156 ~~n~-l~~~------~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 156 KALS-LRNY------QSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EETT-CCEE------CTTTTTTCSEEEEEEEECSB
T ss_pred cCCc-cccc------ChhhhhccccCceEecccCc
Confidence 9998 5544 55555444 44444444443
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.2e-15 Score=138.58 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=122.6
Q ss_pred CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.....+|+.|+|++|.|+.+|. .+..+++|++|+|++|.+.+..|..+.++++|++|+|++| .++.+|.
T Consensus 25 ~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------ 97 (220)
T 2v9t_B 25 EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPK------ 97 (220)
T ss_dssp SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCT------
T ss_pred cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCH------
Confidence 4666444589999999999998887 5899999999999999888877899999999999999995 5666664
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR 150 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~ 150 (417)
..+..+++ +.|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 98 ---~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 98 ---SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ---hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 45788999 99999999988888889999999999999999988887788999999999999999873
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=5.1e-16 Score=151.57 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=133.2
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-cc-CCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IE-CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~-~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~ 79 (417)
.+|..+...++.|+|++|.|+.++.. +. .+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..++.
T Consensus 32 ~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~----- 105 (361)
T 2xot_A 32 NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE----- 105 (361)
T ss_dssp SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT-----
T ss_pred ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCH-----
Confidence 46665444899999999999988876 55 89999999999988777667789999999999999964 565553
Q ss_pred cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc---CCCCCCCEEEeeccCCCCcch-
Q 014835 80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL---GNLEALETLIVDRTAMREVPE- 154 (417)
Q Consensus 80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l---~~l~~L~~L~L~~n~l~~lp~- 154 (417)
..+..+++ +.|+|++|.+....|..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|.+..+|.
T Consensus 106 ----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 106 ----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred ----HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 56788999 999999999888778899999999999999999766433444 679999999999999998884
Q ss_pred hccCCCC--CcEEEccCCC
Q 014835 155 SLGQLSS--LKILVLSNIK 171 (417)
Q Consensus 155 ~l~~L~~--L~~L~L~~n~ 171 (417)
.+..++. |+.|+|++|+
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 6677776 4889999998
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=3.2e-17 Score=157.91 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=90.7
Q ss_pred cccEEEeecCCCc-c-cCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCc--CCCCCccccCCCcc
Q 014835 10 HVYTLELVKVGIK-E-LPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER--FTEIPSCNIDGGIG 85 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~-lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~--lp~l~~l~l~g~~~ 85 (417)
+|++|+|++|.++ . +|..+..+++|++|+|++|.+.+..|..+.++++|++|++++|..++. ++ ..
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~----------~~ 163 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ----------TL 163 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH----------HH
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH----------HH
Confidence 4444444444443 1 343344444444444444443333444444444444444444422221 11 23
Q ss_pred cccccc-ceEEcCCC-CCCCC-CcccccCCC-CCcEEecccc--cCC-ccCCcccCCCCCCCEEEeeccC-C-CCcchhc
Q 014835 86 IERLAS-CRLVLEDC-SSLQS-LPSSLCMFK-SLTSLEIIDC--QYF-MILPDELGNLEALETLIVDRTA-M-REVPESL 156 (417)
Q Consensus 86 l~~l~~-~~L~L~~n-~~l~~-lp~~l~~l~-~L~~L~L~~n--~~~-~~lp~~l~~l~~L~~L~L~~n~-l-~~lp~~l 156 (417)
+..+++ +.|++++| .+... ++..+..++ +|++|++++| .+. +.+|..+..+++|+.|++++|. + ...+..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 445666 67777766 44332 455566666 7777777776 333 3455555666677777777776 4 3445566
Q ss_pred cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCC
Q 014835 157 GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPR 200 (417)
Q Consensus 157 ~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n 200 (417)
..+++|++|++++|..+.+. ....+..+ .|+.|++++|
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~------~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPE------TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGG------GGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCCEeeCCCCCCCCHH------HHHHHhcCCCCCEEeccCc
Confidence 66677777777766423211 11134445 6777777766
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=2.5e-16 Score=158.53 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=87.3
Q ss_pred CCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCC-------------cEEeeecCCCC
Q 014835 4 PSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSL-------------QSIEISNCPIF 69 (417)
Q Consensus 4 P~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L-------------~~L~Ls~c~~l 69 (417)
|+.+.. +|++|++++|.++++|.+++++++|++|++++|.+.+.+|.+++++++| ++|++++|. +
T Consensus 5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l 83 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-L 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-C
T ss_pred ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-c
Confidence 555556 9999999999999999999999999999999999988999988887764 777777753 4
Q ss_pred CcCCC----CCccccCCC----------------------cccccc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecc
Q 014835 70 ERFTE----IPSCNIDGG----------------------IGIERL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEII 121 (417)
Q Consensus 70 ~~lp~----l~~l~l~g~----------------------~~l~~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~ 121 (417)
+.+|. +..++++++ ..+..+ ++ ++|++++|.+.+ +| .++.+++|++|+++
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred ccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 44443 222334333 112222 23 555555554432 44 35555555555555
Q ss_pred cccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCc
Q 014835 122 DCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRK 201 (417)
Q Consensus 122 ~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~ 201 (417)
+|.+.+ +|.. ..+|++|++++|.+..+| .++.+++|+.|++++|. ++ . +|... ..|+.|++++|.
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~-~------l~~~~--~~L~~L~l~~n~ 226 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LK-K------LPDLP--LSLESIVAGNNI 226 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CS-S------CCCCC--TTCCEEECCSSC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CC-c------CCCCc--CcccEEECcCCc
Confidence 555433 3432 235555555555555555 35556666666666655 32 1 33211 156666666666
Q ss_pred cc-cC
Q 014835 202 LT-LD 205 (417)
Q Consensus 202 L~-lp 205 (417)
++ +|
T Consensus 227 l~~lp 231 (454)
T 1jl5_A 227 LEELP 231 (454)
T ss_dssp CSSCC
T ss_pred CCccc
Confidence 55 44
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=1.3e-15 Score=158.59 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=142.4
Q ss_pred cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835 12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS 91 (417)
Q Consensus 12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~ 91 (417)
...+=++.++++||..+. +++++|+|++|++.+..|.+|.++++|++|+|++| .++.+|. .++.++++
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~---------~~f~~L~~ 101 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED---------GAYQSLSH 101 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECT---------TTTTTCTT
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcCh---------hHhcCCCC
Confidence 345556678899998664 58999999998776666678999999999999996 5566654 57889999
Q ss_pred -ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC--CcchhccCCCCCcEEEcc
Q 014835 92 -CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR--EVPESLGQLSSLKILVLS 168 (417)
Q Consensus 92 -~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~ 168 (417)
++|+|++|++.+.-+..|.++++|++|++++|++.+..+..++++++|++|++++|.+. .+|..++.+++|++|+|+
T Consensus 102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999999876655567899999999999999988776777999999999999999995 467888999999999999
Q ss_pred CCCCChhhhhcccCCCCccccC-----CcceeecCCCccc-cCcC
Q 014835 169 NIKRLPEYLQLHLQLPENGLEG-----IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 169 ~n~~l~~~l~~~l~lp~~l~~l-----~L~~L~l~~n~L~-lp~~ 207 (417)
+|+ +++. .|..+..+ ....++++.|.++ +++.
T Consensus 182 ~N~-l~~~------~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 182 SNK-IQSI------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp SSC-CCEE------CGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred Ccc-cccc------ccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 998 5533 34444333 3446788888877 5554
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.6e-15 Score=143.64 Aligned_cols=150 Identities=22% Similarity=0.318 Sum_probs=129.1
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.+... +|++|+|++|.++.++. +..+++|++|+|++|.+.+ +|. +..+++|++|++++|. +..+
T Consensus 60 ~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~n~-i~~~-------- 127 (291)
T 1h6t_A 60 SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNG-ISDI-------- 127 (291)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECTTSC-CCCC--------
T ss_pred cChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECCCCc-CCCC--------
Confidence 45666566 99999999999999888 9999999999999986554 555 8899999999999963 4433
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
..+..+++ +.|++++|.+... ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.++.+|. +..+
T Consensus 128 ---~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l 199 (291)
T 1h6t_A 128 ---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGL 199 (291)
T ss_dssp ---GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTC
T ss_pred ---hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccC
Confidence 35778899 9999999977654 578899999999999999776544 8999999999999999999875 8999
Q ss_pred CCCcEEEccCCC
Q 014835 160 SSLKILVLSNIK 171 (417)
Q Consensus 160 ~~L~~L~L~~n~ 171 (417)
++|+.|++++|+
T Consensus 200 ~~L~~L~l~~n~ 211 (291)
T 1h6t_A 200 KNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEEEEEEE
T ss_pred CCCCEEECcCCc
Confidence 999999999998
No 96
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=3.5e-15 Score=155.49 Aligned_cols=181 Identities=24% Similarity=0.281 Sum_probs=94.6
Q ss_pred CCCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC----CCCc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----EIPS 77 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----~l~~ 77 (417)
.+|..+..+|++|+|++|.|+.+|. .+++|++|+|++|.+ +.+|. .+++|++|+|++|. +..+| .+..
T Consensus 54 ~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~l~~~l~~L~~ 125 (622)
T 3g06_A 54 TLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNP-LTHLPALPSGLCK 125 (622)
T ss_dssp CCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CCCCCCCCTTCCE
T ss_pred ccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCc-CCCCCCCCCCcCE
Confidence 3454333467777777777777776 456777777777653 34554 45666666666642 22222 1222
Q ss_pred cccCCC--cccc-cccc-ceEEcCCCCCCCCCcc---ccc--------------CCCCCcEEecccccCCccCCcccC--
Q 014835 78 CNIDGG--IGIE-RLAS-CRLVLEDCSSLQSLPS---SLC--------------MFKSLTSLEIIDCQYFMILPDELG-- 134 (417)
Q Consensus 78 l~l~g~--~~l~-~l~~-~~L~L~~n~~l~~lp~---~l~--------------~l~~L~~L~L~~n~~~~~lp~~l~-- 134 (417)
|+++++ ..+. .+++ +.|++++|.+.+ +|. .+. .+++|+.|++++|.+.+ +|..+.
T Consensus 126 L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L 203 (622)
T 3g06_A 126 LWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL 203 (622)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred EECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence 333333 0111 1133 444444443322 111 111 12555556665555433 222111
Q ss_pred ---------------CCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecC
Q 014835 135 ---------------NLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRS 198 (417)
Q Consensus 135 ---------------~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~ 198 (417)
.+++|+.|++++|.++.+| ..+++|+.|+|++|. ++ . +|. .. +|+.|+++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~-~------lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LT-S------LPM---LPSGLLSLSVY 269 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CS-C------CCC---CCTTCCEEECC
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CC-c------CCc---ccccCcEEeCC
Confidence 1256677777777776666 345677777777776 44 2 554 34 67777777
Q ss_pred CCccc-cCc
Q 014835 199 PRKLT-LDP 206 (417)
Q Consensus 199 ~n~L~-lp~ 206 (417)
+|.|+ +|.
T Consensus 270 ~N~L~~lp~ 278 (622)
T 3g06_A 270 RNQLTRLPE 278 (622)
T ss_dssp SSCCCSCCG
T ss_pred CCCCCcCCH
Confidence 77766 654
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=6.7e-18 Score=174.43 Aligned_cols=182 Identities=18% Similarity=0.168 Sum_probs=144.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccc-------------cCccccccCCCCCCCcEEe-eecCCCCCcCCCC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCS-------------MLESISSSIFKLKSLQSIE-ISNCPIFERFTEI 75 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~-------------~~~~lp~~l~~L~~L~~L~-Ls~c~~l~~lp~l 75 (417)
+|+.|+|++|.|+.||.+|+++++|+.|++++|. ..+.+|..++.+++|+.|+ ++.+ .+..++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~-- 426 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLR-- 426 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHH--
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhh--
Confidence 8899999999999999999999999999997654 4566677788888888888 4542 221111
Q ss_pred CccccCCCccccccc--c-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc
Q 014835 76 PSCNIDGGIGIERLA--S-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV 152 (417)
Q Consensus 76 ~~l~l~g~~~l~~l~--~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l 152 (417)
.+.+.++ .+..++ . +.|+|++|.+.+ +|. ++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++.+
T Consensus 427 -~l~l~~n-~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 427 -SKFLLEN-SVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp -HHHHHHH-HHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred -hhhhhcc-cccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence 1111111 122222 4 789999996654 787 999999999999999977 8899999999999999999999989
Q ss_pred chhccCCCCCcEEEccCCCCChhhhhcccCC-CCccccC-CcceeecCCCccc-cCcC
Q 014835 153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQL-PENGLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~l-p~~l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
| .++.+++|+.|+|++|. +++. . |..+..+ .|+.|++++|.++ +|+.
T Consensus 502 p-~l~~l~~L~~L~Ls~N~-l~~~------~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNR-LQQS------AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp G-GGTTCSSCCEEECCSSC-CCSS------STTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-ccCCCCCCcEEECCCCC-CCCC------CCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 8 89999999999999998 5533 3 8888899 9999999999988 5553
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2.4e-15 Score=136.52 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=121.0
Q ss_pred CCCCcccCcccEEEeecCCCcccCc--cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPS--SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~ 79 (417)
++|..+...+++|+|++|.|+.++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++|. +..++.
T Consensus 25 ~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~----- 98 (220)
T 2v70_A 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQH----- 98 (220)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCG-----
T ss_pred cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCH-----
Confidence 4676554578999999999998853 38899999999999988777767789999999999999964 455542
Q ss_pred cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835 80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR 150 (417)
Q Consensus 80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~ 150 (417)
..+..+++ +.|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 99 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 99 ----KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ----GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ----hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 56888999 99999999988888999999999999999999999888999999999999999999883
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=5e-15 Score=152.60 Aligned_cols=150 Identities=20% Similarity=0.247 Sum_probs=97.5
Q ss_pred CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC----CCCccccCCC--ccccccc-c-ceEEcCCCCCCCC
Q 014835 33 NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----EIPSCNIDGG--IGIERLA-S-CRLVLEDCSSLQS 104 (417)
Q Consensus 33 ~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----~l~~l~l~g~--~~l~~l~-~-~~L~L~~n~~l~~ 104 (417)
+|+.|+|++|.+.+ +|..+ +++|++|+|++| .++.+| .+..|+++++ ..+..+. + +.|+|++|.+.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~- 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM- 134 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccccccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-
Confidence 89999999987655 88766 389999999996 455655 2333555554 1122122 4 777777775544
Q ss_pred CcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCC
Q 014835 105 LPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLP 184 (417)
Q Consensus 105 lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp 184 (417)
+|. .+++|+.|++++|.+.+ +|. .+++|+.|+|++|.++.+|. +. ++|+.|+|++|. ++ . +|
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~-~------lp 196 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LE-S------LP 196 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CS-S------CC
T ss_pred CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CC-c------hh
Confidence 555 56777777777777554 554 46677777777777766776 54 677777777776 44 3 55
Q ss_pred CccccCCc-------ceeecCCCccc-cCcC
Q 014835 185 ENGLEGIP-------EYLRRSPRKLT-LDPN 207 (417)
Q Consensus 185 ~~l~~l~L-------~~L~l~~n~L~-lp~~ 207 (417)
. +.. .| +.|++++|.|+ +|..
T Consensus 197 ~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 197 A-VPV-RNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp C-CC---------CCEEEECCSSCCCCCCGG
T ss_pred h-HHH-hhhcccccceEEecCCCcceecCHH
Confidence 5 322 45 77777777776 6653
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=2.4e-14 Score=144.07 Aligned_cols=147 Identities=24% Similarity=0.233 Sum_probs=87.6
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC------CCccccCCC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE------IPSCNIDGG 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~------l~~l~l~g~ 83 (417)
+|++|++++|.++.+| .++.+++|++|++++|.+.+ +|..+ .+|++|++++|. ++.+|. +..++++++
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCC
Confidence 6777888877777777 47777777777777765443 55432 467777777653 222332 233444444
Q ss_pred --cccccc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 84 --IGIERL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 84 --~~l~~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
..+... ++ +.|++++|.+. .+|. +..+++|++|++++|.+.+ +|.. +++|+.|++++|.+..+|.. +
T Consensus 206 ~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~ 276 (454)
T 1jl5_A 206 SLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---P 276 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---C
T ss_pred cCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---c
Confidence 112122 34 77777777544 5663 6677777777777776554 4432 35666666666666655542 2
Q ss_pred CCCcEEEccCCC
Q 014835 160 SSLKILVLSNIK 171 (417)
Q Consensus 160 ~~L~~L~L~~n~ 171 (417)
++|+.|++++|.
T Consensus 277 ~~L~~L~ls~N~ 288 (454)
T 1jl5_A 277 QSLTFLDVSENI 288 (454)
T ss_dssp TTCCEEECCSSC
T ss_pred CcCCEEECcCCc
Confidence 455555555555
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=1.5e-14 Score=150.77 Aligned_cols=174 Identities=24% Similarity=0.297 Sum_probs=105.8
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC----CCCccccCCC--
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----EIPSCNIDGG-- 83 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----~l~~l~l~g~-- 83 (417)
+++.|++++|.|+.+|..+. ++|++|+|++|.+. .+|. .+++|++|+|++|. ++.+| .+..|+++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECSCCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcCCcC
Confidence 57788888888888887665 68888888886544 5665 46788888888854 44444 3444555555
Q ss_pred cccc-cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcc---cCCC--------------CCCCEEEe
Q 014835 84 IGIE-RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDE---LGNL--------------EALETLIV 144 (417)
Q Consensus 84 ~~l~-~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~---l~~l--------------~~L~~L~L 144 (417)
..+. .+++ +.|++++|.+. .+|.. +++|++|++++|.+.+ +|.. +..+ ++|+.|++
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L 188 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSV 188 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred CCCCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEEC
Confidence 1111 3455 77788777543 45543 4777777777776543 2222 2222 67777777
Q ss_pred eccCCCCcchhccC-----------------CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835 145 DRTAMREVPESLGQ-----------------LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD 205 (417)
Q Consensus 145 ~~n~l~~lp~~l~~-----------------L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp 205 (417)
++|.++.+|..+.. +++|+.|+|++|. ++ . +| ..+ +|+.|++++|.|+ +|
T Consensus 189 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~-~------lp---~~l~~L~~L~Ls~N~L~~lp 257 (622)
T 3g06_A 189 SDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LT-S------LP---VLPSELKELMVSGNRLTSLP 257 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CS-C------CC---CCCTTCCEEECCSSCCSCCC
T ss_pred CCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc-cC-c------CC---CCCCcCcEEECCCCCCCcCC
Confidence 77777666543211 1445555555555 33 1 44 233 6777777777766 65
Q ss_pred c
Q 014835 206 P 206 (417)
Q Consensus 206 ~ 206 (417)
.
T Consensus 258 ~ 258 (622)
T 3g06_A 258 M 258 (622)
T ss_dssp C
T ss_pred c
Confidence 5
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=6e-17 Score=155.95 Aligned_cols=176 Identities=13% Similarity=0.131 Sum_probs=114.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCcc-ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLES-ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~-lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
+++.|++++|.++..+..+..+++|++|+|++|.+... +|..+..+++|++|++++|......+ ..+..
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~----------~~l~~ 140 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----------NTLAK 140 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH----------HHHTT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH----------HHHhc
Confidence 56666666666665555566667777777777665544 56556667777777777653222222 34566
Q ss_pred ccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccc-cCCcc-CCcccCCCC-CCCEEEeeccC--C--CCcchhccC
Q 014835 89 LAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDC-QYFMI-LPDELGNLE-ALETLIVDRTA--M--REVPESLGQ 158 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n-~~~~~-lp~~l~~l~-~L~~L~L~~n~--l--~~lp~~l~~ 158 (417)
+++ +.|++++|..++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. + ..+|..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 777 778887774333 35666667778888888877 65543 455666777 78888887773 3 456666677
Q ss_pred CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835 159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK 201 (417)
Q Consensus 159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~ 201 (417)
+++|+.|++++|..+++. .+..+..+ .|+.|++++|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~------~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKND------CFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGG------GGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHH------HHHHHhCCCCCCEeeCCCCC
Confidence 778888888777754434 45566666 78888887775
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=2.2e-15 Score=140.54 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=130.7
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+++.++++++.++.++ .+..+++|++|++++|.+ ..+| .+..+++|++|+|++| .+..++ .+..+
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N-~i~~~~-----------~l~~l 84 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHN-QISDLS-----------PLKDL 84 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCG-----------GGTTC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCC-ccCCCh-----------hhccC
Confidence 6777788888888887 478888999999998754 4566 5788899999999885 344443 26778
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~ 168 (417)
++ +.|++++|.+.+ +|... . ++|+.|++++|.+.+ ++ .++.+++|+.|++++|.++.++ .+..+++|+.|+|+
T Consensus 85 ~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLH 158 (263)
T ss_dssp SSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECT
T ss_pred CCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECC
Confidence 88 889999886544 55433 3 899999999998765 33 5889999999999999998886 68889999999999
Q ss_pred CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835 169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~ 206 (417)
+|. ++ . + ..+..+ .|+.|++++|.++ .|.
T Consensus 159 ~N~-i~-~------~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 159 GNE-IT-N------T-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TSC-CC-B------C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCc-Cc-c------h-HHhccCCCCCEEeCCCCcccCCcc
Confidence 998 54 2 4 456677 9999999999977 443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=6.2e-15 Score=153.26 Aligned_cols=150 Identities=22% Similarity=0.322 Sum_probs=129.9
Q ss_pred CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.+... +|+.|+|++|.|+.+|+ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|. +..+
T Consensus 57 ~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~-l~~l-------- 124 (605)
T 1m9s_A 57 SVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNG-ISDI-------- 124 (605)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSC-CCCC--------
T ss_pred CChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCC-CCCC--------
Confidence 46666666 99999999999999887 9999999999999986554 55 58999999999999964 3333
Q ss_pred CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835 81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 159 (417)
..+..+++ +.|+|++|.+... ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+..+| .+..+
T Consensus 125 ---~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l 196 (605)
T 1m9s_A 125 ---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGL 196 (605)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred ---ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccC
Confidence 35778899 9999999977654 678899999999999999877655 899999999999999998886 58999
Q ss_pred CCCcEEEccCCC
Q 014835 160 SSLKILVLSNIK 171 (417)
Q Consensus 160 ~~L~~L~L~~n~ 171 (417)
++|+.|+|++|+
T Consensus 197 ~~L~~L~L~~N~ 208 (605)
T 1m9s_A 197 KNLDVLELFSQE 208 (605)
T ss_dssp TTCSEEECCSEE
T ss_pred CCCCEEEccCCc
Confidence 999999999998
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.6e-16 Score=156.28 Aligned_cols=191 Identities=14% Similarity=0.149 Sum_probs=138.8
Q ss_pred cccEEEeecCCCcc-----cCccccCCcCcceeeccccc---cCccccccC-------CCCCCCcEEeeecCCCCC----
Q 014835 10 HVYTLELVKVGIKE-----LPSSIECLSNLKKLYIVDCS---MLESISSSI-------FKLKSLQSIEISNCPIFE---- 70 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~Ls~n~---~~~~lp~~l-------~~L~~L~~L~Ls~c~~l~---- 70 (417)
+|++|+|++|.++. ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++|..-.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 78888888888873 44457788888888888853 233445443 678888888888865432
Q ss_pred -------cCCCCCccccCCC-------cc----cccc---------cc-ceEEcCCCCCC-CCCc---ccccCCCCCcEE
Q 014835 71 -------RFTEIPSCNIDGG-------IG----IERL---------AS-CRLVLEDCSSL-QSLP---SSLCMFKSLTSL 118 (417)
Q Consensus 71 -------~lp~l~~l~l~g~-------~~----l~~l---------~~-~~L~L~~n~~l-~~lp---~~l~~l~~L~~L 118 (417)
..+.+..|+++++ .. +..+ ++ +.|++++|.+. ..+| ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 2355666777776 12 2233 78 99999999876 3455 467788999999
Q ss_pred ecccccCCc-----cCCcccCCCCCCCEEEeeccCC-----CCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc
Q 014835 119 EIIDCQYFM-----ILPDELGNLEALETLIVDRTAM-----REVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL 188 (417)
Q Consensus 119 ~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~n~l-----~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~ 188 (417)
++++|.+.. ..|..+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|. +++... ..+|..+.
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~--~~l~~~l~ 269 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA--AAVVDAFS 269 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH--HHHHHHHH
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhH--HHHHHHHh
Confidence 999998763 3444788899999999999999 5678888999999999999998 542200 00344443
Q ss_pred c--C-CcceeecCCCccc
Q 014835 189 E--G-IPEYLRRSPRKLT 203 (417)
Q Consensus 189 ~--l-~L~~L~l~~n~L~ 203 (417)
. . .|+.|++++|.++
T Consensus 270 ~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TCSSCCCCEEECCSSCCB
T ss_pred hccCCCeEEEECcCCcCC
Confidence 3 6 8999999999976
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.1e-14 Score=132.89 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=106.5
Q ss_pred CCCCcccCcccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
.+|.....+|++|+|++|.|+.+ |..+..+++|++|+|++|.+....+..+..+++|++|+|++| .++.+|
T Consensus 33 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~------- 104 (229)
T 3e6j_A 33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLP------- 104 (229)
T ss_dssp SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-------
T ss_pred ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccC-------
Confidence 46664445999999999999977 556899999999999998875544466789999999999996 233222
Q ss_pred CCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCC
Q 014835 81 DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQL 159 (417)
Q Consensus 81 ~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L 159 (417)
+..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+..+|. .+..+
T Consensus 105 -------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 105 -------------------------SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp -------------------------TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 234567788888888888755 677778888888888888888877764 57788
Q ss_pred CCCcEEEccCCC
Q 014835 160 SSLKILVLSNIK 171 (417)
Q Consensus 160 ~~L~~L~L~~n~ 171 (417)
++|+.|+|++|+
T Consensus 159 ~~L~~L~l~~N~ 170 (229)
T 3e6j_A 159 SSLTHAYLFGNP 170 (229)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEEeeCCC
Confidence 888888888887
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=6.8e-15 Score=127.33 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=79.5
Q ss_pred cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835 10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE 87 (417)
Q Consensus 10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~ 87 (417)
+|+.|+|++|.++ .+|..+..+++|++|+|++|.+.+. ..+..+++|++|++++|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N--------------------- 81 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN--------------------- 81 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC---------------------
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC---------------------
Confidence 5666666666665 5665556666666666666554333 34555666666666654
Q ss_pred ccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCCCcch----hccCCCCC
Q 014835 88 RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMREVPE----SLGQLSSL 162 (417)
Q Consensus 88 ~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L 162 (417)
.+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+..+|. .+..+++|
T Consensus 82 ------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 82 ------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp ------------CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred ------------cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 33333555555677777777777765442 12566777777777777777766665 66777777
Q ss_pred cEEEccCCC
Q 014835 163 KILVLSNIK 171 (417)
Q Consensus 163 ~~L~L~~n~ 171 (417)
+.|++++|.
T Consensus 150 ~~L~l~~n~ 158 (168)
T 2ell_A 150 TYLDGYDRE 158 (168)
T ss_dssp CEETTEETT
T ss_pred cEecCCCCC
Confidence 777777776
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=2.5e-14 Score=138.94 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=146.4
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
.-++++-+++++++||..+ .++|++|+|++|++. .+| ..|.++++|++|+|++|..++.+|. ..+.+
T Consensus 10 ~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---------~~f~~ 77 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEA---------DVFSN 77 (350)
T ss_dssp ETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECT---------TSBCS
T ss_pred eCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccCh---------hHhhc
Confidence 4578899999999999877 368999999997655 555 5689999999999999887777775 56788
Q ss_pred ccc-c-eEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec-cCCCCcch-hccCC-CCCc
Q 014835 89 LAS-C-RLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR-TAMREVPE-SLGQL-SSLK 163 (417)
Q Consensus 89 l~~-~-~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~-n~l~~lp~-~l~~L-~~L~ 163 (417)
+++ . .+.+..|.+....|..+..+++|++|++++|.+....+..+....++..|++.+ +.+..+|. .+..+ ..|+
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 888 5 456666766666678899999999999999998776666677778888999976 56777775 45555 4689
Q ss_pred EEEccCCCCChhhhhcccCCCCccccC-CcceeecCC-Cccc-cCcCccccccc
Q 014835 164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSP-RKLT-LDPNELSEIVK 214 (417)
Q Consensus 164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~-n~L~-lp~~~L~~l~~ 214 (417)
.|+|++|. ++ . +|...+.. .|+.|++.+ |.++ +|+..+..+..
T Consensus 158 ~L~L~~N~-i~-~------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 158 ILWLNKNG-IQ-E------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp EEECCSSC-CC-E------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred hhcccccc-cc-C------CChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 99999999 55 3 78788888 999999986 5577 88875555543
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=9.9e-16 Score=162.81 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=94.7
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccc----cccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVD----CSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~----n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~ 85 (417)
+++.|+|.+|.+..+|..+.....|..+.+.. ++.+...|..+..+++|+.|+|++|. +..+| ..
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~----------~~ 242 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNIS----------AN 242 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSC-CSCCC----------GG
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCC----------hh
Confidence 57889998888887777655555555554433 12233557778889999999999864 45666 46
Q ss_pred cccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcE
Q 014835 86 IERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKI 164 (417)
Q Consensus 86 l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~ 164 (417)
+..++. +.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++.+++|+.
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence 678888 99999999766 88999999999999999999977 7899999999999999999999999988999999999
Q ss_pred EEccCCCCChhh
Q 014835 165 LVLSNIKRLPEY 176 (417)
Q Consensus 165 L~L~~n~~l~~~ 176 (417)
|+|++|. +.+.
T Consensus 321 L~L~~N~-l~~~ 331 (727)
T 4b8c_D 321 LGVEGNP-LEKQ 331 (727)
T ss_dssp EECTTSC-CCSH
T ss_pred EeCCCCc-cCCC
Confidence 9999998 5533
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.3e-14 Score=125.57 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=109.6
Q ss_pred cCCcCcceeeccccccC-ccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcc
Q 014835 29 ECLSNLKKLYIVDCSML-ESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPS 107 (417)
Q Consensus 29 ~~L~~L~~L~Ls~n~~~-~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~ 107 (417)
...++|+.|++++|.+. +.+|..+..+++|++|++++|. +. .+ .
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~---------------------------------l~-~~-~ 65 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG---------------------------------LI-SV-S 65 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC---------------------------------CC-CC-S
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC---------------------------------CC-Ch-h
Confidence 34577888888887765 5777777788888888888862 11 22 4
Q ss_pred cccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCCCChhhhhcccCCCC
Q 014835 108 SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE 185 (417)
Q Consensus 108 ~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~ 185 (417)
.+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|. +. . +|.
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~-~------~~~ 137 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VT-N------LND 137 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GG-T------STT
T ss_pred hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-Cc-c------hHH
Confidence 5678999999999999988888888888999999999999998877 689999999999999998 55 2 555
Q ss_pred ----ccccC-CcceeecCCCccc-cCc
Q 014835 186 ----NGLEG-IPEYLRRSPRKLT-LDP 206 (417)
Q Consensus 186 ----~l~~l-~L~~L~l~~n~L~-lp~ 206 (417)
.+..+ .|+.|++++|.+. +|.
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 138 YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred HHHHHHHhCccCcEecCCCCChhhccc
Confidence 56677 9999999999976 654
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=5.9e-16 Score=152.28 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=111.6
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCcc----ccccCCCCCCCcEEeeecCCC--CC-cCCC-CCccccC
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLES----ISSSIFKLKSLQSIEISNCPI--FE-RFTE-IPSCNID 81 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~----lp~~l~~L~~L~~L~Ls~c~~--l~-~lp~-l~~l~l~ 81 (417)
.|+...++...+..++..+..+++|++|+|++|.+... ++..+..+++|++|+|++|.. +. .+|. +..+ .
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l--~ 87 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL--L 87 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH--H
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH--H
Confidence 44444444445557888889999999999999987765 444578899999999999732 11 1120 0000 0
Q ss_pred CCcccccccc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCccCCc----ccCCC---------CCCCEEE
Q 014835 82 GGIGIERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFMILPD----ELGNL---------EALETLI 143 (417)
Q Consensus 82 g~~~l~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l---------~~L~~L~ 143 (417)
..+..+++ +.|+|++|.+.. .+|..+..+++|++|+|++|.+....+. .+..+ ++|++|+
T Consensus 88 --~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 88 --QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp --HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred --HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 12345666 777777776655 3566666677777777777765432222 22223 6777777
Q ss_pred eeccCCC--Ccc---hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCcc
Q 014835 144 VDRTAMR--EVP---ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKL 202 (417)
Q Consensus 144 L~~n~l~--~lp---~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L 202 (417)
+++|.++ .+| ..+..+++|+.|+|++|. +.+... ..-+|..+..+ .|+.|++++|.+
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~-~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGI-EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHH-HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHH-HHHHHHHhhcCCCccEEECcCCCC
Confidence 7777764 344 345566677777777776 331100 00023244555 677777777766
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=8.5e-15 Score=124.10 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=40.0
Q ss_pred CCCCCcccccCCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCCCcch----hccCCCCCcEEEcc
Q 014835 101 SLQSLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMREVPE----SLGQLSSLKILVLS 168 (417)
Q Consensus 101 ~l~~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L~ 168 (417)
+.+.+|..+..+++|++|++++|.+.+. .+..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 3333555555566666666666665442 23556666666666666666655554 45666666666654
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=9e-14 Score=123.44 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=97.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.-+.++++++.++++|..+. ++|++|+|++|.+ ..+|..+.++++|++|+|++|.
T Consensus 11 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~---------------------- 65 (193)
T 2wfh_A 11 LDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNR---------------------- 65 (193)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSC----------------------
T ss_pred CCCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCc----------------------
Confidence 34678888888888887654 5888889888655 4677778888888888888852
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEcc
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~ 168 (417)
+.+..+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+..+|. .+..+++|+.|+|+
T Consensus 66 -----------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 66 -----------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp -----------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred -----------CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 222334456778888888888888877777778888888888888888887776 47778888888888
Q ss_pred CCC
Q 014835 169 NIK 171 (417)
Q Consensus 169 ~n~ 171 (417)
+|+
T Consensus 135 ~N~ 137 (193)
T 2wfh_A 135 ANP 137 (193)
T ss_dssp SSC
T ss_pred CCC
Confidence 887
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=6e-14 Score=124.38 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=98.2
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccc-cCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISS-SIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
.-++|++++++++++|..+.. +|++|+|++|.+.+..+. .+..+++|++|+|++|.
T Consensus 9 ~~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~--------------------- 65 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ--------------------- 65 (192)
T ss_dssp ETTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---------------------
T ss_pred CCCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC---------------------
Confidence 457899999999999986654 899999999766554443 37788888888888852
Q ss_pred cccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEc
Q 014835 89 LASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVL 167 (417)
Q Consensus 89 l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L 167 (417)
+.+..|..+..+++|++|+|++|.+.+..+..++.+++|++|+|++|.++.+ |..+..+++|++|+|
T Consensus 66 ------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 66 ------------LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp ------------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred ------------CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 3334456677788888888888888777777788888888888888888644 667788888888888
Q ss_pred cCCC
Q 014835 168 SNIK 171 (417)
Q Consensus 168 ~~n~ 171 (417)
++|+
T Consensus 134 ~~N~ 137 (192)
T 1w8a_A 134 ASNP 137 (192)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8887
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.2e-14 Score=124.22 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=74.5
Q ss_pred CcccC-cccEEEeecCCCcccCccccCCc-CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835 5 SVTSC-HVYTLELVKVGIKELPSSIECLS-NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG 82 (417)
Q Consensus 5 ~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g 82 (417)
.+... +|+.|+|++|.++.+|. +..+. +|++|+|++|.+.+ + ..+..+++|++|++++|.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~--------------- 75 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNR--------------- 75 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSC---------------
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCc---------------
Confidence 33444 66666666666666654 33333 66666666655443 2 345666666666666641
Q ss_pred CccccccccceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCc--ccCCCCCCCEEEeeccCCCCcchh----
Q 014835 83 GIGIERLASCRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPD--ELGNLEALETLIVDRTAMREVPES---- 155 (417)
Q Consensus 83 ~~~l~~l~~~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~---- 155 (417)
+ ..+|. .+..+++|++|++++|.+ +.+|. .++.+++|+.|++++|.+..+|..
T Consensus 76 ------------------l-~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~ 135 (176)
T 1a9n_A 76 ------------------I-CRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 135 (176)
T ss_dssp ------------------C-CEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH
T ss_pred ------------------c-cccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHH
Confidence 1 12222 235566666666666664 33444 566666666666666666666653
Q ss_pred ccCCCCCcEEEccCCC
Q 014835 156 LGQLSSLKILVLSNIK 171 (417)
Q Consensus 156 l~~L~~L~~L~L~~n~ 171 (417)
+..+++|+.|+++.|.
T Consensus 136 ~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCSEETTEECC
T ss_pred HHHCCccceeCCCcCC
Confidence 6666667777766665
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=1.6e-15 Score=147.95 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCcccC--cccEEEeecCCCcccC-----ccccCCc-CcceeeccccccCccccccCCCC-----CCCcEEeeecCC
Q 014835 4 PSVTSC--HVYTLELVKVGIKELP-----SSIECLS-NLKKLYIVDCSMLESISSSIFKL-----KSLQSIEISNCP 67 (417)
Q Consensus 4 P~~~~~--~L~~L~Ls~n~l~~lp-----~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~L-----~~L~~L~Ls~c~ 67 (417)
|++... +|++|+|++|.++.++ ..+..++ +|++|+|++|.+....+..+..+ ++|++|+|++|.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 445555 5999999999999776 4577888 89999999988777666656554 899999999975
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=5.1e-14 Score=119.25 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=103.2
Q ss_pred CCcCcceeeccccccC-ccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCccc
Q 014835 30 CLSNLKKLYIVDCSML-ESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSS 108 (417)
Q Consensus 30 ~L~~L~~L~Ls~n~~~-~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~ 108 (417)
..++|+.|++++|.+. +.+|..+..+++|++|++++|. +. .+ ..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~---------------------------------~~-~~ 59 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LT---------------------------------SI-AN 59 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CC---------------------------------CC-TT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CC---------------------------------Cc-hh
Confidence 3578899999998776 5788878889999999998862 11 12 45
Q ss_pred ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCCCChhhhhcccCCCC-
Q 014835 109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE- 185 (417)
Q Consensus 109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~- 185 (417)
+..+++|++|++++|.+.+.+|..++.+++|++|++++|.++.+| ..+..+++|++|++++|. +++ +|.
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~-------~~~~ 131 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTN-------LNDY 131 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGG-------STTH
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccc-------hHHH
Confidence 668899999999999988878888888999999999999998875 789999999999999998 552 454
Q ss_pred ---ccccC-CcceeecCC
Q 014835 186 ---NGLEG-IPEYLRRSP 199 (417)
Q Consensus 186 ---~l~~l-~L~~L~l~~ 199 (417)
.+..+ +|+.|++++
T Consensus 132 ~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 132 RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHCCCcccccCCC
Confidence 46667 899988763
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=4.5e-13 Score=116.89 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=96.7
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
..+.+++++++++.+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|. ++.+|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---------------- 68 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLP---------------- 68 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC----------------
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeC----------------
Confidence 56889999999999986554 789999999987766555567888999999998852 22222
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEcc
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVLS 168 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~ 168 (417)
+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|.. +..+++|++|+|+
T Consensus 69 ----------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 69 ----------------DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ----------------hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 23356778888888888887766666677888888888888888777764 4678888888888
Q ss_pred CCC
Q 014835 169 NIK 171 (417)
Q Consensus 169 ~n~ 171 (417)
+|+
T Consensus 133 ~N~ 135 (177)
T 2o6r_A 133 TNP 135 (177)
T ss_dssp SSC
T ss_pred CCC
Confidence 887
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=9.3e-14 Score=129.49 Aligned_cols=145 Identities=22% Similarity=0.180 Sum_probs=118.4
Q ss_pred CCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccc
Q 014835 30 CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSS 108 (417)
Q Consensus 30 ~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~ 108 (417)
.+.++..++++++.+. .++ .+..+++|++|++++| .++.+| .+..+++ +.|++++|.+.+ +|.
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n-~i~~l~-----------~l~~l~~L~~L~L~~N~i~~-~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNS-NIQSLA-----------GMQFFTNLKELHLSHNQISD-LSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTS-CCCCCT-----------TGGGCTTCCEEECCSSCCCC-CGG-
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCC-Ccccch-----------HHhhCCCCCEEECCCCccCC-Chh-
Confidence 5778888999986544 455 4778999999999996 455554 4677888 999999997655 444
Q ss_pred ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc
Q 014835 109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL 188 (417)
Q Consensus 109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~ 188 (417)
+..+++|++|++++|.+.+ +|... . ++|+.|++++|.++.++ .+..+++|+.|+|++|+ ++ . ++ .+.
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~-~------~~-~l~ 147 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LK-S------IV-MLG 147 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CC-B------CG-GGG
T ss_pred hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CC-C------Ch-HHc
Confidence 8899999999999998665 45433 3 99999999999998886 58999999999999999 55 2 54 577
Q ss_pred cC-CcceeecCCCccc
Q 014835 189 EG-IPEYLRRSPRKLT 203 (417)
Q Consensus 189 ~l-~L~~L~l~~n~L~ 203 (417)
.+ .|+.|++++|.++
T Consensus 148 ~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEIT 163 (263)
T ss_dssp GCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCcCc
Confidence 78 9999999999987
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=2.1e-13 Score=140.84 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=63.7
Q ss_pred CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcccccCC
Q 014835 33 NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMF 112 (417)
Q Consensus 33 ~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l 112 (417)
.|+.|+|++|.+.+ +|. ++.+++|++|+|++|. +. .+|..++.+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~-l~---------------------------------~lp~~~~~l 485 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR-LR---------------------------------ALPPALAAL 485 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC-CC---------------------------------CCCGGGGGC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccc-cc---------------------------------ccchhhhcC
Confidence 58888888876554 676 8888888888888852 22 344455555
Q ss_pred CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc--chhccCCCCCcEEEccCCC
Q 014835 113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV--PESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~L~~L~~L~L~~n~ 171 (417)
++|+.|+|++|.+.+ +| .++.+++|+.|+|++|.++.+ |..++.+++|+.|+|++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 566666666655444 44 555566666666666666544 5556666666666666665
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=6.8e-13 Score=117.75 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=94.3
Q ss_pred CCCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccC
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID 81 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~ 81 (417)
++|.....+|++|+|++|.|+.+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|. +.
T Consensus 24 ~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~----------- 91 (193)
T 2wfh_A 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LR----------- 91 (193)
T ss_dssp SCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-----------
T ss_pred cCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cC-----------
Confidence 466544448999999999999999989999999999999998887777789999999999999962 22
Q ss_pred CCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC
Q 014835 82 GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM 149 (417)
Q Consensus 82 g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l 149 (417)
...|..+..+++|++|+|++|.+....+..+..+++|+.|++++|.+
T Consensus 92 ---------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 ---------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp ---------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ---------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 22344567788888888888887765556688888999999988877
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=1.5e-12 Score=115.34 Aligned_cols=126 Identities=14% Similarity=0.121 Sum_probs=100.8
Q ss_pred ceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcc-cccCCC
Q 014835 35 KKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPS-SLCMFK 113 (417)
Q Consensus 35 ~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~-~l~~l~ 113 (417)
++|+++++. ++.+|..+.. +|++|++++| .+.+..+. .+..++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n---------------------------------~i~~~~~~~~~~~l~ 54 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDN---------------------------------ELGRISSDGLFGRLP 54 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSC---------------------------------CCCSBCCSCSGGGCT
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCC---------------------------------cCCccCCccccccCC
Confidence 677777754 3566665532 6777777774 22222222 377899
Q ss_pred CCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-C
Q 014835 114 SLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-I 191 (417)
Q Consensus 114 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~ 191 (417)
+|++|+|++|.+.+..|..++.+++|++|+|++|.++.++. .+..+++|++|+|++|. +++. .|..+..+ .
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~------~~~~~~~l~~ 127 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCV------MPGSFEHLNS 127 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEE------CTTSSTTCTT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCee------CHHHhhcCCC
Confidence 99999999999999889999999999999999999987765 58899999999999999 6645 67778888 9
Q ss_pred cceeecCCCccc
Q 014835 192 PEYLRRSPRKLT 203 (417)
Q Consensus 192 L~~L~l~~n~L~ 203 (417)
|+.|++++|+++
T Consensus 128 L~~L~L~~N~l~ 139 (192)
T 1w8a_A 128 LTSLNLASNPFN 139 (192)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEeCCCCcc
Confidence 999999999987
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=4.5e-14 Score=150.06 Aligned_cols=130 Identities=22% Similarity=0.193 Sum_probs=94.1
Q ss_pred EEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-
Q 014835 13 TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS- 91 (417)
Q Consensus 13 ~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~- 91 (417)
.++++.|.+...|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++| .+..+| ..+..+++
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp----------~~~~~l~~L 272 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELP----------AEIKNLSNL 272 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCC----------GGGGGGTTC
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccC----------hhhhCCCCC
Confidence 333444444445666888999999999997655 67777888999999999985 455777 57888999
Q ss_pred ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC-Ccchhc
Q 014835 92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR-EVPESL 156 (417)
Q Consensus 92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l 156 (417)
+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999766 78999999999999999999764 78888999999999999999995 444443
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.40 E-value=3.6e-14 Score=142.34 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=118.6
Q ss_pred cccEEEeecCCCcc-cCccc-cCCc----CcceeeccccccCc----cccccCCCCCCCcEEeeecCCCC----------
Q 014835 10 HVYTLELVKVGIKE-LPSSI-ECLS----NLKKLYIVDCSMLE----SISSSIFKLKSLQSIEISNCPIF---------- 69 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~-lp~~i-~~L~----~L~~L~Ls~n~~~~----~lp~~l~~L~~L~~L~Ls~c~~l---------- 69 (417)
+|++|+|++|.++. .+..+ ..++ +|++|+|++|.+.. .+|..+..+++|++|++++|..-
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 78888888888873 22222 3344 68888888887663 56777888888888888886531
Q ss_pred --CcCCCCCccccCCC-----------cccccccc-ceEEcCCCCCCCCCccccc-----CCCCCcEEecccccCCcc--
Q 014835 70 --ERFTEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQSLPSSLC-----MFKSLTSLEIIDCQYFMI-- 128 (417)
Q Consensus 70 --~~lp~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~lp~~l~-----~l~~L~~L~L~~n~~~~~-- 128 (417)
...+.+..++++++ ..+..+++ +.|++++|.+....+..+. .+++|++|++++|.+...
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 11234555666655 12344567 8888888765443232222 355788888888776553
Q ss_pred --CCcccCCCCCCCEEEeeccCCCCc------chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCC
Q 014835 129 --LPDELGNLEALETLIVDRTAMREV------PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSP 199 (417)
Q Consensus 129 --lp~~l~~l~~L~~L~L~~n~l~~l------p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~ 199 (417)
++..+..+++|++|++++|.++.. +.....+++|++|++++|. +++... ..++..+..+ .|+.|++++
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGC--GDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHH--HHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHH--HHHHHHHhhCCCcceEECCC
Confidence 455666777788888888777432 2222357778888887776 442100 0023344455 777777777
Q ss_pred Cccc
Q 014835 200 RKLT 203 (417)
Q Consensus 200 n~L~ 203 (417)
|.++
T Consensus 294 n~i~ 297 (461)
T 1z7x_W 294 NELG 297 (461)
T ss_dssp CCCH
T ss_pred CCCc
Confidence 7764
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=1.9e-14 Score=144.42 Aligned_cols=187 Identities=18% Similarity=0.163 Sum_probs=97.5
Q ss_pred cccEEEeecCCCccc-Ccccc-----CCcCcceeeccccccCcc----ccccCCCCCCCcEEeeecCCCCC---------
Q 014835 10 HVYTLELVKVGIKEL-PSSIE-----CLSNLKKLYIVDCSMLES----ISSSIFKLKSLQSIEISNCPIFE--------- 70 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~l-p~~i~-----~L~~L~~L~Ls~n~~~~~----lp~~l~~L~~L~~L~Ls~c~~l~--------- 70 (417)
+|++|+|++|.++.. +..+. .+++|++|+|++|.+... ++..+..+++|++|++++|..-.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 889999999988732 22232 356899999999876653 56667788899999999874211
Q ss_pred ---cCCCCCccccCCC-----------cccccccc-ceEEcCCCCCCCCCccccc-----CCCCCcEEecccccCCcc--
Q 014835 71 ---RFTEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQSLPSSLC-----MFKSLTSLEIIDCQYFMI-- 128 (417)
Q Consensus 71 ---~lp~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~lp~~l~-----~l~~L~~L~L~~n~~~~~-- 128 (417)
..+.+..++++++ ..+..+++ +.|++++|.+....+..+. ..++|++|++++|.+.+.
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 1233333444433 11222444 5555555543222111111 123555555555554432
Q ss_pred --CCcccCCCCCCCEEEeeccCCCCc-chhc----cC-CCCCcEEEccCCCCChh----hhhcccCCCCccccC-Cccee
Q 014835 129 --LPDELGNLEALETLIVDRTAMREV-PESL----GQ-LSSLKILVLSNIKRLPE----YLQLHLQLPENGLEG-IPEYL 195 (417)
Q Consensus 129 --lp~~l~~l~~L~~L~L~~n~l~~l-p~~l----~~-L~~L~~L~L~~n~~l~~----~l~~~l~lp~~l~~l-~L~~L 195 (417)
++..+..+++|++|++++|.++.. +..+ .. .++|+.|+|++|. +++ . +|..+... .|+.|
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~------l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSS------LAATLLANHSLREL 403 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHH------HHHHHHHCCCCCEE
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHH------HHHHHHhCCCccEE
Confidence 333344455555555555555321 1111 11 4455555555554 332 2 34444444 55555
Q ss_pred ecCCCccc
Q 014835 196 RRSPRKLT 203 (417)
Q Consensus 196 ~l~~n~L~ 203 (417)
++++|.++
T Consensus 404 ~l~~N~i~ 411 (461)
T 1z7x_W 404 DLSNNCLG 411 (461)
T ss_dssp ECCSSSCC
T ss_pred ECCCCCCC
Confidence 55555544
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=5.5e-14 Score=137.05 Aligned_cols=188 Identities=14% Similarity=0.022 Sum_probs=110.4
Q ss_pred EEEeecCCCc-ccCccccCCcCcceeeccccccCcccc----ccCCCCC-CCcEEeeecCCCCCc------------CCC
Q 014835 13 TLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESIS----SSIFKLK-SLQSIEISNCPIFER------------FTE 74 (417)
Q Consensus 13 ~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp----~~l~~L~-~L~~L~Ls~c~~l~~------------lp~ 74 (417)
.++|+.|.++ .+|..+...++|++|+|++|.+....+ ..+.+++ +|++|+|++|..-.. .+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678889998 556656666779999999988766555 6677888 999999999743221 145
Q ss_pred CCccccCCC-------c----ccccc-cc-ceEEcCCCCCCCCCccc----ccC-CCCCcEEecccccCCcc----CCcc
Q 014835 75 IPSCNIDGG-------I----GIERL-AS-CRLVLEDCSSLQSLPSS----LCM-FKSLTSLEIIDCQYFMI----LPDE 132 (417)
Q Consensus 75 l~~l~l~g~-------~----~l~~l-~~-~~L~L~~n~~l~~lp~~----l~~-l~~L~~L~L~~n~~~~~----lp~~ 132 (417)
+..++++++ . .+..+ ++ +.|+|++|.+....+.. +.. .++|++|++++|.+... ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 555566555 1 12233 45 66777666654443332 222 24677777776665532 2233
Q ss_pred cCCCC-CCCEEEeeccCCCCcc-h----hccCC-CCCcEEEccCCCCChhhhhcccCCCCcccc-C-CcceeecCCCccc
Q 014835 133 LGNLE-ALETLIVDRTAMREVP-E----SLGQL-SSLKILVLSNIKRLPEYLQLHLQLPENGLE-G-IPEYLRRSPRKLT 203 (417)
Q Consensus 133 l~~l~-~L~~L~L~~n~l~~lp-~----~l~~L-~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~-l-~L~~L~l~~n~L~ 203 (417)
+..++ +|++|+|++|.++... . .+..+ ++|+.|+|++|. +.+.. ...++..+.. . .|+.|++++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKS--YAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSC--HHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhH--HHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33443 6777777777664332 2 23334 467777777766 44210 0002333333 2 6777777777765
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.7e-14 Score=128.54 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=81.0
Q ss_pred cccEEEeecC--CCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835 10 HVYTLELVKV--GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE 87 (417)
Q Consensus 10 ~L~~L~Ls~n--~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~ 87 (417)
.|+.+.+.+. .++++|..++.+++|++|+|++|.+.+ +| .+.++++|++|++++|. +..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~---------------- 84 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKK---------------- 84 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECS----------------
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-ccc----------------
Confidence 5666666663 566777788888889999998876555 67 67788888888888852 223
Q ss_pred ccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEE
Q 014835 88 RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKIL 165 (417)
Q Consensus 88 ~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L 165 (417)
+|..+..+++|++|++++|.+.+ +| .++.+++|+.|++++|.+..++. .+..+++|++|
T Consensus 85 -----------------l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 85 -----------------IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp -----------------CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred -----------------ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 34444445566666666665443 33 35556666666666666665543 55666666666
Q ss_pred EccCCC
Q 014835 166 VLSNIK 171 (417)
Q Consensus 166 ~L~~n~ 171 (417)
++++|+
T Consensus 146 ~l~~N~ 151 (198)
T 1ds9_A 146 LLAGNP 151 (198)
T ss_dssp EECSCH
T ss_pred EecCCc
Confidence 666665
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=9.4e-13 Score=114.83 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=100.8
Q ss_pred ccCCcCcceeeccccccCccccccCCCCC-CCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCc
Q 014835 28 IECLSNLKKLYIVDCSMLESISSSIFKLK-SLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLP 106 (417)
Q Consensus 28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~-~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp 106 (417)
+..+.+|+.|++++|.+. .+|. +..+. +|++|++++|. +.+ +
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~---------------------------------l~~-~- 57 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNE---------------------------------IRK-L- 57 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSC---------------------------------CCE-E-
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCC---------------------------------CCc-c-
Confidence 556777888888876554 4454 44444 77777777752 222 2
Q ss_pred ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcccCCC
Q 014835 107 SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLHLQLP 184 (417)
Q Consensus 107 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp 184 (417)
..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|+ +. . +|
T Consensus 58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~-~------~~ 129 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VT-N------KK 129 (176)
T ss_dssp CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GG-G------ST
T ss_pred cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CC-C------cH
Confidence 356788999999999999876544555899999999999999999987 88999999999999999 54 3 66
Q ss_pred Cc----cccC-CcceeecCCCccc
Q 014835 185 EN----GLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 185 ~~----l~~l-~L~~L~l~~n~L~ 203 (417)
.. +..+ .|+.|+++.|.+.
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECCHH
T ss_pred hHHHHHHHHCCccceeCCCcCCHH
Confidence 64 6777 9999999998854
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.2e-11 Score=107.70 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=89.9
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l 80 (417)
++|.....+|++|++++|.++.+|.. ++.+++|++|+|++|.+.+..+..+..+++|++|++++|. ++.+
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~-------- 91 (177)
T 2o6r_A 21 SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSL-------- 91 (177)
T ss_dssp SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC--------
T ss_pred cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-cccc--------
Confidence 35543333899999999999988875 6899999999999987766555667899999999999962 2222
Q ss_pred CCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC
Q 014835 81 DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE 151 (417)
Q Consensus 81 ~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~ 151 (417)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 92 ------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 92 ------------------------PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------------------------CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 22345678888888888888775555556788889999998888743
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=2e-11 Score=105.89 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=70.8
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
..+.|++++|.++++|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~---------------- 70 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLP---------------- 70 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC----------------
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccC----------------
Confidence 56788888888888887663 778888888877776667777778888888888752 22222
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR 150 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~ 150 (417)
+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+.
T Consensus 71 ----------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 71 ----------------AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 223456666666666666655544445666666666666666553
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.3e-11 Score=105.98 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=68.1
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.-+.++++++.++++|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++| .++.+|
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~---------------- 73 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIP---------------- 73 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC----------------
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccC----------------
Confidence 44677888888888887664 67788888877766666666777777777777774 222222
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP 153 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 153 (417)
+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+...+
T Consensus 74 ----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 74 ----------------TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ----------------hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 122345666666666666655443334566666666666666554333
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=1.7e-12 Score=134.37 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=29.8
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeee
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEIS 64 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls 64 (417)
+|+.|+++++....+|..+..+++|++|+|++|.+..... ..+..+++|++|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 5666666665445566555666666666666655322211 223455555555555
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=1.5e-13 Score=122.27 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=89.2
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
+|++|+|++|.++.+| .+..+++|++|++++|.+. .+|..+..+++|++|++++|. +.
T Consensus 49 ~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~-l~------------------- 106 (198)
T 1ds9_A 49 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IA------------------- 106 (198)
T ss_dssp TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE-CC-------------------
T ss_pred CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc-CC-------------------
Confidence 9999999999999999 7999999999999998655 678777778999999999962 21
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCCCc-ch----------hcc
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMREV-PE----------SLG 157 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~----------~l~ 157 (417)
.+| .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+... |. .+.
T Consensus 107 --------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 107 --------------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp --------------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred --------------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 233 35566777777777776554221 3567777778888877777433 22 266
Q ss_pred CCCCCcEEE
Q 014835 158 QLSSLKILV 166 (417)
Q Consensus 158 ~L~~L~~L~ 166 (417)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 778888776
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.2e-10 Score=111.78 Aligned_cols=189 Identities=12% Similarity=0.120 Sum_probs=119.0
Q ss_pred cccEEEeecCCCc--------------------ccCcc-ccC--------CcCcceeeccccccCccccccCCCCCCCcE
Q 014835 10 HVYTLELVKVGIK--------------------ELPSS-IEC--------LSNLKKLYIVDCSMLESISSSIFKLKSLQS 60 (417)
Q Consensus 10 ~L~~L~Ls~n~l~--------------------~lp~~-i~~--------L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~ 60 (417)
+|+.|||++|++. .||.. |.. +++|+.|+|.+ ++...-+.+|.++++|+.
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 6999999999888 55554 667 89999999988 554444567889999999
Q ss_pred EeeecCCCCCcCCCCC--------ccccCCC-----------cccccccc-c-eEEcCCCCCCCCCccc-----------
Q 014835 61 IEISNCPIFERFTEIP--------SCNIDGG-----------IGIERLAS-C-RLVLEDCSSLQSLPSS----------- 108 (417)
Q Consensus 61 L~Ls~c~~l~~lp~l~--------~l~l~g~-----------~~l~~l~~-~-~L~L~~n~~l~~lp~~----------- 108 (417)
|++++|. +..++.-. .+..... ..+..... + .+.+... +.++..
T Consensus 129 l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 129 CQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp EEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGC
T ss_pred EEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCcccc
Confidence 9999854 22333200 0000000 00111111 0 1111110 001110
Q ss_pred ----------------c-cCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCc-EEEccC
Q 014835 109 ----------------L-CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLK-ILVLSN 169 (417)
Q Consensus 109 ----------------l-~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~-~L~L~~ 169 (417)
+ ..+++|+.|+|++|++...-+..|.++++|+.|++.+| +..++. .+..+++|+ .|++.+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 0 12688999999988866666667888999999999887 777764 678888898 898877
Q ss_pred CCCChhhhhcccCCC-CccccC-CcceeecCCCccc-cCcCcccccc
Q 014835 170 IKRLPEYLQLHLQLP-ENGLEG-IPEYLRRSPRKLT-LDPNELSEIV 213 (417)
Q Consensus 170 n~~l~~~l~~~l~lp-~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~ 213 (417)
. ++ . ++ ..+..+ .|+.|+++.|.++ ++...+....
T Consensus 284 -~-l~-~------I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 284 -S-VT-A------IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp -T-CC-E------ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred -c-ce-E------EchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 3 44 2 44 345556 8999998888877 7776554443
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=2.7e-10 Score=98.69 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=38.7
Q ss_pred cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCC
Q 014835 106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIK 171 (417)
Q Consensus 106 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~ 171 (417)
|..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4445556666666666666554444445566666666666666655554 35556666666666665
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=3.4e-10 Score=98.49 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEccCCC
Q 014835 113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVLSNIK 171 (417)
Q Consensus 113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~n~ 171 (417)
++|+.|+|++|.+.+..|..++.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4444455554444444444444455555555555555444432 2444555555555544
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=7.8e-10 Score=106.70 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=67.9
Q ss_pred cEEEeecC-CCcccCccccCCcCcceeeccc-cccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 12 YTLELVKV-GIKELPSSIECLSNLKKLYIVD-CSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 12 ~~L~Ls~n-~l~~lp~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
..++++++ +|+.||. +..+++|++|+|++ |.+.+..|..|.+|++|++|+|++|.
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~---------------------- 67 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG---------------------- 67 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----------------------
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc----------------------
Confidence 35677776 7878887 77778888888875 55555445667777777777777752
Q ss_pred ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835 90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR 150 (417)
Q Consensus 90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~ 150 (417)
+.+..|..|..+++|++|+|++|.+.+..+..+..++ |+.|+|.+|.+.
T Consensus 68 -----------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 68 -----------LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -----------CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -----------cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 2223344566677777777777776544444444444 777777777664
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.00 E-value=6.7e-11 Score=122.26 Aligned_cols=161 Identities=12% Similarity=0.018 Sum_probs=98.3
Q ss_pred cccEEEeecCCCc-ccCccccC-Cc-CcceeeccccccCc--cccccCCCCCCCcEEeeecCCCC-----------CcCC
Q 014835 10 HVYTLELVKVGIK-ELPSSIEC-LS-NLKKLYIVDCSMLE--SISSSIFKLKSLQSIEISNCPIF-----------ERFT 73 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~~-L~-~L~~L~Ls~n~~~~--~lp~~l~~L~~L~~L~Ls~c~~l-----------~~lp 73 (417)
+|++|+|+++.++ ..+..++. ++ +|++|+|++|.... .++....++++|++|+|++|... ..+|
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 8999999999887 34444555 33 49999998876322 22333346889999999987521 1234
Q ss_pred CCCccccCCC-----------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCC---ccCCcccCCCCC
Q 014835 74 EIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYF---MILPDELGNLEA 138 (417)
Q Consensus 74 ~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~---~~lp~~l~~l~~ 138 (417)
.+..|+++++ ..+..+++ +.|++++|...+ +|..+..+++|++|+++.+... ...+..+..+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 5555555443 12234566 777777765433 5566666677777777643222 223344555666
Q ss_pred CCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 139 LETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 139 L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
|+.|+++++....+|..+..+++|++|+|++|.
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 666666665555566666666666666666666
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=5e-11 Score=123.19 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=98.7
Q ss_pred cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC--------CCCC---------
Q 014835 10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC--------PIFE--------- 70 (417)
Q Consensus 10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c--------~~l~--------- 70 (417)
+|++|+|++|.++ .++..+..+++|+.|++++|-....++.....+++|++|++++| +.++
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 7888888887766 23333567788888888876221222322234778888888442 2222
Q ss_pred cCCCCCccccCCC-------cccc-cccc-ceEEcC-----CCCCCCCCc------ccccCCCCCcEEecccccCCccCC
Q 014835 71 RFTEIPSCNIDGG-------IGIE-RLAS-CRLVLE-----DCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMILP 130 (417)
Q Consensus 71 ~lp~l~~l~l~g~-------~~l~-~l~~-~~L~L~-----~n~~l~~lp------~~l~~l~~L~~L~L~~n~~~~~lp 130 (417)
.+|.+..+.+..+ ..+. .+++ +.|+++ +|..++..| ..+..+++|+.|++++ .+....+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 1333333322211 1121 3555 666666 333333222 1244566677777755 3333333
Q ss_pred cccCC-CCCCCEEEeeccCCCC-cchhc-cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 131 DELGN-LEALETLIVDRTAMRE-VPESL-GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 131 ~~l~~-l~~L~~L~L~~n~l~~-lp~~l-~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
..++. +++|+.|++++|.++. .+..+ ..+++|+.|+|++|.. ++. .+...+..+ +|+.|++++|+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDK-----ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHH-----HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHH-----HHHHHHHhCCCCCEEeeeCCCCC
Confidence 33333 6677777777777632 11222 4567777777777773 322 011122334 6777777777653
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.9e-09 Score=103.29 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=126.0
Q ss_pred C-cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeec-----------------CCCC
Q 014835 9 C-HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN-----------------CPIF 69 (417)
Q Consensus 9 ~-~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~-----------------c~~l 69 (417)
+ +|+.|+|.+ .++.|+.. |..+++|+.|++.+|.+...-+..|.++.++..+.+.. |..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 6 999999999 89999885 88999999999999876665566777777777666543 1111
Q ss_pred Cc---------C-----------CCCCccccCCC------ccc-ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecc
Q 014835 70 ER---------F-----------TEIPSCNIDGG------IGI-ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEII 121 (417)
Q Consensus 70 ~~---------l-----------p~l~~l~l~g~------~~l-~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~ 121 (417)
+. + ..+..+.+.|. ..+ ..+++ +.|+|++|.+...-+..|..+++|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 10 0 00000111111 011 12677 999999987655555678899999999999
Q ss_pred cccCCccCCcccCCCCCCC-EEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-Ccceeec
Q 014835 122 DCQYFMILPDELGNLEALE-TLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRR 197 (417)
Q Consensus 122 ~n~~~~~lp~~l~~l~~L~-~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l 197 (417)
+| +...-+..|.++++|+ .|.+.+ .++.++ .++..+++|+.|+++.|. ++ . ++.. +..+ +|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~-~------I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-IT-T------LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CC-E------ECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cC-c------cchhhhcCCcchhhhcc
Confidence 97 5555566799999999 999988 787776 588999999999998888 54 2 5554 4455 8887753
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=2.4e-09 Score=103.20 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=60.4
Q ss_pred EEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCC-CCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCC
Q 014835 60 SIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLED-CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLE 137 (417)
Q Consensus 60 ~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~-n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 137 (417)
.+++++++.+..+| . +..+++ +.|+|++ |.+.+..|..|..+++|+.|+|++|.+.+..|..|++++
T Consensus 12 ~v~~~~~n~l~~ip----------~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSLH----------H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTTTT----------T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCccC----------C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 34666543566665 3 555566 6666664 544444445566666666666666666666666666666
Q ss_pred CCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 138 ALETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 138 ~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
+|+.|+|++|.|+.+|..+.....|+.|+|.+|+
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 6666666666666665543332236666666666
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=4.8e-11 Score=123.32 Aligned_cols=58 Identities=12% Similarity=0.300 Sum_probs=32.0
Q ss_pred cccEEEeecCCCc-ccCcccc-CCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCC
Q 014835 10 HVYTLELVKVGIK-ELPSSIE-CLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCP 67 (417)
Q Consensus 10 ~L~~L~Ls~n~l~-~lp~~i~-~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~ 67 (417)
+|++|+|+++.++ ..+..+. .+++|++|+|++|...+. ++..+.++++|++|+|++|.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 5666666666655 2233333 466666666666643332 33333356666666666654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=8.2e-11 Score=115.09 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCCCcEEecccccCCc----cCCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEccCCC
Q 014835 112 FKSLTSLEIIDCQYFM----ILPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 112 l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~n~ 171 (417)
.++|++|+|++|.+.. .++..+..+++|++|+|++|.++. ++..+...++|+.|+|++|.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 4455555555555432 123333445555555555555532 23344445555555555555
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=1.2e-10 Score=113.86 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=111.6
Q ss_pred cccEEEeecCCCcccC-----cccc-CCcCcceeeccccccCccccccC-CCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835 10 HVYTLELVKVGIKELP-----SSIE-CLSNLKKLYIVDCSMLESISSSI-FKLKSLQSIEISNCPIFERFTEIPSCNIDG 82 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp-----~~i~-~L~~L~~L~Ls~n~~~~~lp~~l-~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g 82 (417)
+|+.|+|++|.++... ..+. ..++|++|+|++|.+...-...+ ..+++|++|+|++|.. +.... . .+.
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~-~--~L~- 147 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEAC-K--DLR- 147 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHH-H--HHH-
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHH-H--HHH-
Confidence 7899999999998432 2233 23799999999987655433333 2467899999999732 21100 0 000
Q ss_pred Cccc-ccccc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCc----cCCcccCCCCCCCEEEeeccCCCC-
Q 014835 83 GIGI-ERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFM----ILPDELGNLEALETLIVDRTAMRE- 151 (417)
Q Consensus 83 ~~~l-~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~n~l~~- 151 (417)
..+ ...+. +.|+|++|.+.. .++..+..+++|++|+|++|.+.. .++..+...++|++|+|++|.++.
T Consensus 148 -~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 148 -DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp -HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred -HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 111 23466 899999997643 355566788999999999999754 235567778899999999999964
Q ss_pred ----cchhccCCCCCcEEEccCCCCChh
Q 014835 152 ----VPESLGQLSSLKILVLSNIKRLPE 175 (417)
Q Consensus 152 ----lp~~l~~L~~L~~L~L~~n~~l~~ 175 (417)
+...+...++|++|+|++|. +++
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 44456678999999999998 553
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=5.8e-08 Score=95.73 Aligned_cols=171 Identities=9% Similarity=0.111 Sum_probs=108.6
Q ss_pred cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
+|+.+.|.. .++.|+.. +..+++|+.++|..|++ ..+|.......+|+.+.|..+ ++.++. .++.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~~--l~~I~~---------~aF~~ 224 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPVT--LKEIGS---------QAFLK 224 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCTT--CCEECT---------TTTTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc-eEechhhEeecccCEEEeCCc--hheehh---------hHhhC
Confidence 788888885 77777764 78889999999987544 445544334688888888743 555554 56667
Q ss_pred ccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC-----Ccc-hhccCCC
Q 014835 89 LAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR-----EVP-ESLGQLS 160 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~-----~lp-~~l~~L~ 160 (417)
+++ +.+.+..+ +..++ .+|.. .+|+.+.+.. .+...-...|.++++|+.+.+.++.+. .++ ..+..++
T Consensus 225 ~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 225 TSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 777 77777664 33333 33444 6778877743 334444556777788888888776654 344 3667777
Q ss_pred CCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc-cCcC
Q 014835 161 SLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT-LDPN 207 (417)
Q Consensus 161 ~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~-lp~~ 207 (417)
+|+.+.|.++ ++ . ++.. +..+ .|+.+.+..+ ++ ++..
T Consensus 301 ~L~~l~l~~~--i~-~------I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 301 KLARFEIPES--IR-I------LGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp TCCEECCCTT--CC-E------ECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred cCCeEEeCCc--eE-E------EhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 8888877743 33 2 4433 3344 7777776443 33 4444
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=5.2e-08 Score=94.65 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=109.6
Q ss_pred cccEEEeecCCCc---------ccCccccCCcCcceeecccccc---------CccccccCCCCCCCcEEeeecCCCCCc
Q 014835 10 HVYTLELVKVGIK---------ELPSSIECLSNLKKLYIVDCSM---------LESISSSIFKLKSLQSIEISNCPIFER 71 (417)
Q Consensus 10 ~L~~L~Ls~n~l~---------~lp~~i~~L~~L~~L~Ls~n~~---------~~~lp~~l~~L~~L~~L~Ls~c~~l~~ 71 (417)
.++.|.+...... .+..++..+++|+.|.+..... .+.++..+..+++|+.|+|++|..+ .
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence 4677777653332 2334466788999998865322 1134444567899999999986322 2
Q ss_pred CCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccccc--CCCCCcEEecccc--cCCc-----cCCccc--CCCCCC
Q 014835 72 FTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLC--MFKSLTSLEIIDC--QYFM-----ILPDEL--GNLEAL 139 (417)
Q Consensus 72 lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~--~l~~L~~L~L~~n--~~~~-----~lp~~l--~~l~~L 139 (417)
++ .+ .+++ +.|+|..|.+.......+. .+++|++|+|+.+ ...+ .+...+ ..+++|
T Consensus 187 l~-----------~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L 254 (362)
T 2ra8_A 187 IG-----------KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254 (362)
T ss_dssp CC-----------SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC
T ss_pred ec-----------cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc
Confidence 22 12 2567 8888887765433223333 6899999998632 1111 111222 357899
Q ss_pred CEEEeeccCCCC-cchhc---cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 140 ETLIVDRTAMRE-VPESL---GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 140 ~~L~L~~n~l~~-lp~~l---~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
+.|+|.+|.++. .+..+ ..+++|++|+|+.|. +.+.... .++..+..+ +|+.|++++|.++
T Consensus 255 r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGAR--LLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHH--HHHTTHHHHTTCSEEECCSBBCC
T ss_pred CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHH--HHHhhcccCCcceEEECCCCcCC
Confidence 999999998842 22222 357899999999887 6542000 033344556 8999999998865
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=9.1e-06 Score=79.94 Aligned_cols=180 Identities=8% Similarity=0.038 Sum_probs=124.6
Q ss_pred cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
+|+.+.|..+ ++.|+.. |.+ .+|+.+.|.. ++...-+..|.++++|+.++++. +.+..++. ..+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~---------~aF~- 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPA---------STFV- 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECT---------TTTT-
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEech---------hhEe-
Confidence 8999998865 8888875 555 5799999986 44444456788999999999987 46666664 3444
Q ss_pred ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEE
Q 014835 89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILV 166 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~ 166 (417)
..+ +.+.+..+ +...-..+|.++++|+.+.+..+ +...-...|.+ .+|+.+.+ .+.+..++ ..+..+++|+.+.
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 356 88888754 33333457888999999999874 33333445666 79999999 45677775 4788999999999
Q ss_pred ccCCCCChhhhhcccCCCC-ccccC-CcceeecCCCccc-cCcCcccc
Q 014835 167 LSNIKRLPEYLQLHLQLPE-NGLEG-IPEYLRRSPRKLT-LDPNELSE 211 (417)
Q Consensus 167 L~~n~~l~~~l~~~l~lp~-~l~~l-~L~~L~l~~n~L~-lp~~~L~~ 211 (417)
+.++....... ..++. .+..+ +|+.+.+.. .++ ++...+..
T Consensus 278 l~~~~~~~~~~---~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~ 321 (401)
T 4fdw_A 278 TYGSTFNDDPE---AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG 321 (401)
T ss_dssp EESSCCCCCTT---CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred eCCccccCCcc---cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence 98876320000 00333 44455 899998884 355 66554433
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=9.3e-08 Score=92.85 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=100.9
Q ss_pred cccEEEeecCCCc----------ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835 10 HVYTLELVKVGIK----------ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79 (417)
Q Consensus 10 ~L~~L~Ls~n~l~----------~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~ 79 (417)
+|+.|.+...... .++..+..+++|+.|+|++|... .++. + .+++|++|+|..|..-...
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~------- 209 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV------- 209 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH-------
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH-------
Confidence 8999999764332 24444677899999999987433 3444 4 4899999999986421100
Q ss_pred cCCCccc--ccccc-ceEEcCCC--CC-----CCCCcccc--cCCCCCcEEecccccCCccCCccc---CCCCCCCEEEe
Q 014835 80 IDGGIGI--ERLAS-CRLVLEDC--SS-----LQSLPSSL--CMFKSLTSLEIIDCQYFMILPDEL---GNLEALETLIV 144 (417)
Q Consensus 80 l~g~~~l--~~l~~-~~L~L~~n--~~-----l~~lp~~l--~~l~~L~~L~L~~n~~~~~lp~~l---~~l~~L~~L~L 144 (417)
...+ ..+++ +.|+|+.+ .. ...+...+ ..+++|++|+|.+|.+....+..+ ..+++|++|+|
T Consensus 210 ---l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 210 ---VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp ---HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred ---HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 0122 25677 77877531 11 11122222 257999999999998764332222 35889999999
Q ss_pred eccCCCC-----cchhccCCCCCcEEEccCCCCChhh
Q 014835 145 DRTAMRE-----VPESLGQLSSLKILVLSNIKRLPEY 176 (417)
Q Consensus 145 ~~n~l~~-----lp~~l~~L~~L~~L~L~~n~~l~~~ 176 (417)
+.|.++. ++..+..+++|+.|+|++|. +++.
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~ 322 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDE 322 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHH
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCc-CCHH
Confidence 9999954 45555678999999999998 5533
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=1.6e-06 Score=75.82 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=36.3
Q ss_pred ccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEe--eccCCCC-----cchhccCCCCCcEEEccCCC
Q 014835 109 LCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIV--DRTAMRE-----VPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 109 l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~L~~L~~L~L~~n~ 171 (417)
+...++|++|+|++|.+... +...+...++|++|+| ++|.++. +...+...++|+.|+|++|.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 33445666666666665432 3344555566677777 5666642 33344555667777776665
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=9.8e-06 Score=69.90 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred ceEEcCCCCCCCC-CcccccCCCCCcEEecccccCC
Q 014835 92 CRLVLEDCSSLQS-LPSSLCMFKSLTSLEIIDCQYF 126 (417)
Q Consensus 92 ~~L~L~~n~~l~~-lp~~l~~l~~L~~L~L~~n~~~ 126 (417)
+.|+|++|..++. --..+..+++|++|++++|...
T Consensus 117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 4455555543321 1123556788888888888643
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1e-05 Score=69.76 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=54.0
Q ss_pred cCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcccccC
Q 014835 32 SNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCM 111 (417)
Q Consensus 32 ~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~ 111 (417)
.+|+.|+|++|.+...--..+.++++|++|+|++|..++.- --..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--------------------------------gL~~L~~ 108 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--------------------------------CLERLSQ 108 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--------------------------------HHHHHHT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--------------------------------HHHHHHh
Confidence 36777777777644433334567777777777777443321 0112233
Q ss_pred C----CCCcEEeccccc-CCccCCcccCCCCCCCEEEeeccC-CCC
Q 014835 112 F----KSLTSLEIIDCQ-YFMILPDELGNLEALETLIVDRTA-MRE 151 (417)
Q Consensus 112 l----~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~n~-l~~ 151 (417)
+ ++|++|+|++|. ++..--..+..+++|+.|++++|. ++.
T Consensus 109 ~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 2 368999999986 444333446678899999998885 443
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=4.7e-06 Score=72.80 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=68.9
Q ss_pred CcccccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEc--cCCCCC
Q 014835 105 LPSSLCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVL--SNIKRL 173 (417)
Q Consensus 105 lp~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L--~~n~~l 173 (417)
+...+...++|++|+|++|.+... +...+...++|++|+|++|.|+. +...+...++|++|+| ++|. +
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i 135 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-L 135 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-C
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-C
Confidence 344556678899999999987542 34445567889999999999964 5567788889999999 7788 5
Q ss_pred hhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835 174 PEYLQLHLQLPENGLEG-IPEYLRRSPRKLT 203 (417)
Q Consensus 174 ~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~ 203 (417)
.+.... .+...+... .|+.|++++|.+.
T Consensus 136 ~~~g~~--~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 136 GNNVEM--EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHH--HHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHH--HHHHHHHhCCCcCEEeccCCCCC
Confidence 432100 022344455 8999999999865
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=2.3e-05 Score=72.38 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=39.6
Q ss_pred CCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCCCCcchhccCCC--CCcEEEccCCC
Q 014835 111 MFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAMREVPESLGQLS--SLKILVLSNIK 171 (417)
Q Consensus 111 ~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~--~L~~L~L~~n~ 171 (417)
++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+..+. .+..+. +|+.|+|++|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 46677777777777665 44555566777777777777776552 233333 77777777777
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=5.2e-05 Score=70.06 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=57.9
Q ss_pred cccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCC-Ccch-------h
Q 014835 88 RLAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMR-EVPE-------S 155 (417)
Q Consensus 88 ~l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~-------~ 155 (417)
+++. +.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. -...+..+ +|++|+|++|.+. .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 4566 778888887766 5567777899999999999997764 11223334 9999999999994 4542 3
Q ss_pred ccCCCCCcEEEc
Q 014835 156 LGQLSSLKILVL 167 (417)
Q Consensus 156 l~~L~~L~~L~L 167 (417)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 677899998873
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.56 E-value=0.021 Score=54.89 Aligned_cols=147 Identities=10% Similarity=0.010 Sum_probs=84.6
Q ss_pred CCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccc
Q 014835 30 CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSS 108 (417)
Q Consensus 30 ~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~ 108 (417)
....+..+.+.. .........+....+|+.+.+..+ +..++. ..+..... +.+.+..+ ....-...
T Consensus 192 ~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~---------~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 192 AAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITSG--VTTLGD---------GAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp TTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCTT--CCEECT---------TTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred cccccccccccc-ceeEEeecccccccccceeeeccc--eeEEcc---------ccccCCccceEEEcCCC-ccEeCccc
Confidence 344455554443 222222334556667777766542 232222 34445555 55666543 22222345
Q ss_pred ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCc-
Q 014835 109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN- 186 (417)
Q Consensus 109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~- 186 (417)
+..+.+|+.+.+..+ +...-...+..+++|+.+.+.++.+..++. .+..+.+|+.+.|..+ ++ . +...
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~-~------I~~~a 328 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LK-T------IQVYA 328 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC-E------ECTTT
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--cc-E------EHHHH
Confidence 667788888888653 333333467788889999988888877764 6788888999888654 33 2 4433
Q ss_pred cccC-CcceeecCC
Q 014835 187 GLEG-IPEYLRRSP 199 (417)
Q Consensus 187 l~~l-~L~~L~l~~ 199 (417)
+... +|+.+.+..
T Consensus 329 F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 329 FKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCCCCCCT
T ss_pred hhCCCCCCEEEECC
Confidence 4444 777776543
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.48 E-value=0.02 Score=55.54 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=95.9
Q ss_pred cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835 10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~ 88 (417)
.|+.+.+.. .++.+... +..+..|+.+.+..+ ....-...+.....|+.+.+... .++. ..+..
T Consensus 231 ~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~----~i~~---------~~F~~ 295 (394)
T 4fs7_A 231 GVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV----IVPE---------KTFYG 295 (394)
T ss_dssp CCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS----EECT---------TTTTT
T ss_pred CCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCce----eecc---------ccccc
Confidence 778887764 44555553 677889999998763 34444456777888888877652 1222 34555
Q ss_pred ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEE
Q 014835 89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILV 166 (417)
Q Consensus 89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~ 166 (417)
..+ +.+.+..+ ....-..++.++++|+.+++..+ +...-...|.++.+|+.+.+..+ +..++ .++..+++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 566 66766553 22222446778889999998653 33334567888999999998766 66665 3788899999998
Q ss_pred ccCC
Q 014835 167 LSNI 170 (417)
Q Consensus 167 L~~n 170 (417)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.38 E-value=0.028 Score=54.45 Aligned_cols=163 Identities=16% Similarity=0.103 Sum_probs=103.9
Q ss_pred cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835 10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89 (417)
Q Consensus 10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l 89 (417)
.|+.+.+..+ +..+.........|+.+.+.. .....-...+.++..|+.+.+..+ ...++. ..+...
T Consensus 209 ~L~~i~~~~~-~~~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~---------~~F~~~ 275 (394)
T 4fs7_A 209 LLENMEFPNS-LYYLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGG---------SLFYNC 275 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECS---------CTTTTC
T ss_pred ccceeecCCC-ceEeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCC--cceeec---------cccccc
Confidence 5666655543 233444445567888888865 333333345778899999998763 222222 344455
Q ss_pred cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEc
Q 014835 90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVL 167 (417)
Q Consensus 90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L 167 (417)
.. ..+.+....+ ....+..+.+|+.+.+..+ +...-...|.++.+|+.+.+..+ ++.++ .++..+++|+.+.+
T Consensus 276 ~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 276 SGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECC
T ss_pred cccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEE
Confidence 55 5555543321 1235668899999999764 34444566889999999999654 77675 47889999999999
Q ss_pred cCCCCChhhhhcccCCCCc-cccC-CcceeecCC
Q 014835 168 SNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSP 199 (417)
Q Consensus 168 ~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~ 199 (417)
..+ ++ . +... +... +|+.+++..
T Consensus 351 p~~--l~-~------I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 351 PLS--LR-K------IGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT--CC-E------ECTTTBTTCTTCCEEEEEG
T ss_pred Ccc--cc-E------ehHHHhhCCCCCCEEEECC
Confidence 765 33 2 4443 4455 899888754
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.16 E-value=0.014 Score=56.53 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=73.6
Q ss_pred ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCC-cccccCCCCCcEEecccccCCc
Q 014835 50 SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSL-PSSLCMFKSLTSLEIIDCQYFM 127 (417)
Q Consensus 50 ~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~l-p~~l~~l~~L~~L~L~~n~~~~ 127 (417)
.+|.++.+|+.+.+... +..++. ..+.+.+. +.+.+... +..+ ...|.++.+|+.+.|..+ +..
T Consensus 259 ~aF~~c~~L~~i~lp~~--~~~I~~---------~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~ 324 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS--VVSIGT---------GAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQ 324 (394)
T ss_dssp TTTTTCSSCCEEECCTT--CCEECT---------TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred ceeeecccccEEecccc--cceecC---------cccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccE
Confidence 34666777777776542 222222 34555555 66666432 2333 345777889999998754 333
Q ss_pred cCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835 128 ILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK 201 (417)
Q Consensus 128 ~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~ 201 (417)
.-...|.++.+|+.+.+..+ +..+. .++.++++|+.+++.++. .. + ..+... .|+.+.+..+.
T Consensus 325 I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~-~~--------~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR-SQ--------W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH-HH--------H-HTCBCCCCC---------
T ss_pred ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce-ee--------h-hhhhccCCCCEEEeCCCC
Confidence 34456888999999999654 66665 478889999999998765 22 1 133444 67766665544
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0053 Score=49.94 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=43.6
Q ss_pred cEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC
Q 014835 12 YTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI 68 (417)
Q Consensus 12 ~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~ 68 (417)
..++.++++++ .+|..+. .+|++|+|++|.+...-+..|..+++|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 57888999998 9997553 4799999999776654455677899999999999743
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.74 E-value=0.032 Score=54.04 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=86.1
Q ss_pred CcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCC
Q 014835 21 IKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLED 98 (417)
Q Consensus 21 l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~ 98 (417)
++.+.. .+..+..|+.+.+.. .....-...+.++++|+.+.+.. .+..++. ..+.++.+ +.+.+..
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~---------~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS--RITELPE---------SVFAGCISLKSIDIPE 320 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT---------TTTTTCTTCCEEECCT
T ss_pred ceEcccceeeecccccEEeccc-ccceecCcccccccccccccCCC--cccccCc---------eeecCCCCcCEEEeCC
Confidence 334433 367788899998876 33333345677889999998863 4555554 56777778 8888875
Q ss_pred CCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835 99 CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK 171 (417)
Q Consensus 99 n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~ 171 (417)
+ +...-..+|.++.+|+.+.+..+ +...-...|.++++|+.+++.++... + ..+...++|+.+.+..+.
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 4 22233457888999999999654 33333467899999999999876432 1 345667788888876554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.49 E-value=0.011 Score=48.13 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=36.9
Q ss_pred CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccC
Q 014835 2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSML 45 (417)
Q Consensus 2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~ 45 (417)
++|.-+..+|+.|+|++|.|+.||.. +..+++|++|+|++|...
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 56765555899999999999999986 688999999999997543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.34 E-value=0.1 Score=50.04 Aligned_cols=129 Identities=12% Similarity=0.143 Sum_probs=88.7
Q ss_pred cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCC
Q 014835 27 SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSL 105 (417)
Q Consensus 27 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~l 105 (417)
.+....+|+.+.+.. .....-...+.++.+|+.+.+..+ ++.++. ..+.+... +.+.+..+ +..+
T Consensus 212 ~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~---------~aF~~~~~l~~i~l~~~--i~~i 277 (379)
T 4h09_A 212 GFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGS---------FLLQNCTALKTLNFYAK--VKTV 277 (379)
T ss_dssp TTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECT---------TTTTTCTTCCEEEECCC--CSEE
T ss_pred ccccccccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCc---------cccceeehhcccccccc--ceec
Confidence 456677888888765 333333455677888888888653 444443 45556666 66766543 3333
Q ss_pred -cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCC
Q 014835 106 -PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNI 170 (417)
Q Consensus 106 -p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n 170 (417)
...+..+++|+.+.+.++.+...-...|.++.+|+.+.|..+ ++.|.. ++.++++|+.+.+..+
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 345778899999999887665555677889999999999654 666654 6888999999888654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.31 E-value=0.009 Score=52.22 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=6.3
Q ss_pred CCCcEEecccccC
Q 014835 113 KSLTSLEIIDCQY 125 (417)
Q Consensus 113 ~~L~~L~L~~n~~ 125 (417)
+.|++|+|++|.+
T Consensus 98 ~tL~~L~L~~N~I 110 (197)
T 1pgv_A 98 PSLRVLNVESNFL 110 (197)
T ss_dssp SSCCEEECCSSBC
T ss_pred CccCeEecCCCcC
Confidence 4455555555443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.01 E-value=0.016 Score=50.57 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=60.3
Q ss_pred cccccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEccCCCC--Ch
Q 014835 106 PSSLCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVLSNIKR--LP 174 (417)
Q Consensus 106 p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~n~~--l~ 174 (417)
-..+..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|+.|.|+. +-..+..-+.|+.|+|++|.. +.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 34455667899999999886542 33344556789999999999952 344566667799999986531 33
Q ss_pred hhhhcccCCCCccccC-CcceeecCCCcc
Q 014835 175 EYLQLHLQLPENGLEG-IPEYLRRSPRKL 202 (417)
Q Consensus 175 ~~l~~~l~lp~~l~~l-~L~~L~l~~n~L 202 (417)
+... ..+...+..- .|+.|+++.|.+
T Consensus 143 ~~g~--~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 143 NQVE--MDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHH--HHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHH--HHHHHHHHhCCCcCeEeccCCCc
Confidence 2100 0022234444 788888877653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.89 E-value=40 Score=25.23 Aligned_cols=47 Identities=4% Similarity=0.034 Sum_probs=34.2
Q ss_pred cCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeec
Q 014835 18 KVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN 65 (417)
Q Consensus 18 ~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~ 65 (417)
+..++.|... |..+..|+.+.|-. +....-...|.++.+|+.+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 3456667664 78889999998876 34444445688888999888876
Done!