BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014836
         (417 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 41.6 bits (96), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 119 WQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCLLHRLIPENAKSMETFDS 178
           WQP+GC L  + +T     LR KR+ FVGDS  R  + S + +++  + E     E    
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEVKEVGNKHENIPF 123

Query: 179 LTVFTAKDYNATIEFYW 195
           +      D ++T+ F W
Sbjct: 124 V------DGDSTVNFLW 134


>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
           sapiens GN=CPED1 PE=2 SV=1
          Length = 1026

 Score = 41.6 bits (96), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 97  YIQPQLTCQEHGRPEKDYQYWRWQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRG 153
           +I P L+C ++     D++   WQPH C         + + L G++++F+GDS NRG
Sbjct: 727 WIVPCLSCSDNRTC--DWREITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDSTNRG 781


>sp|Q96PB1|CASD1_HUMAN CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1
          Length = 797

 Score = 37.4 bits (85), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 119 WQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCLLHRLIPENAKSMETFDS 178
           WQPH C +  +  +     L  K + F+GDS  R  + S V +++    E     E    
Sbjct: 64  WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIP- 122

Query: 179 LTVFTAKDYNATIEFYWAP 197
              F  K  +  ++F W P
Sbjct: 123 ---FEDKTASVKVDFLWHP 138


>sp|Q7TN73|CASD1_MOUSE CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1
          Length = 797

 Score = 37.4 bits (85), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 119 WQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCLLHRLIPENAKSMETFDS 178
           WQPH C +  +  +     L  K + F+GDS  R  + S V +++    E     E    
Sbjct: 64  WQPHSCMMHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIP- 122

Query: 179 LTVFTAKDYNATIEFYWAP 197
              F  K  +  ++F W P
Sbjct: 123 ---FEDKAASVKVDFLWHP 138


>sp|Q43772|UGPA_HORVU UTP--glucose-1-phosphate uridylyltransferase OS=Hordeum vulgare
           PE=2 SV=1
          Length = 473

 Score = 36.2 bits (82), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 90  YEESECPYIQPQ--LTCQEHGRPEKDYQYWRWQPHGCDLPSFNATLMLETL--RGKRMMF 145
           + +S+ P I  +  L     G+  KD   W    HG   PS N +  L+TL  +GK  +F
Sbjct: 164 FNQSQYPRIVTEDFLPLPSKGQTGKDG--WYPPGHGDVFPSLNNSGKLDTLLSQGKEYVF 221

Query: 146 VGDSLNRGQYVSMVCLLHRLIPENAKSMET 175
           V +S N G  V +  L H +  +N   ME 
Sbjct: 222 VANSDNLGAIVDIKILNHLIHNQNEYCMEV 251


>sp|Q98EW1|UXAC_RHILO Uronate isomerase OS=Rhizobium loti (strain MAFF303099) GN=uxaC
           PE=3 SV=1
          Length = 469

 Score = 36.2 bits (82), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 185 KDYNATIEFYWAPFLLESNSDNAVVHRISDRIVRKGSINKHGRNWKGVDILVFNTYLWWM 244
           K + AT   +  P    +N  +A    + +RI R+GS ++  R      +L     +   
Sbjct: 240 KSFGATSSDHGHPTAETANLSDAAAQELFNRI-RRGSQDERERKLFRAQMLTEMAKMSRD 298

Query: 245 TGLKMKILKGSFDDEEKEIVE---------IPTEDAYRMAMKSMLRWVKLNMDRKKTRVF 295
            GL ++I  GS+ +    + +         IPT   Y  A+K +L  V L  +R  T + 
Sbjct: 299 DGLVLQIHPGSWRNHSPSVFQRFGRDKGFDIPTRTDYVTALKPLLDCVGL--ERDLTVIL 356

Query: 296 FTSMSPSHGKSIDWGGEPGKNCYNETTLIEDPNYWGSDCRKGVMR 340
           FT    S+ + +     P    Y    L   P +W  D  +G+ R
Sbjct: 357 FTLDESSYAREL----APLAGVYPALKL--GPAWWFHDSPEGMRR 395


>sp|P30625|KAPR_CAEEL cAMP-dependent protein kinase regulatory subunit OS=Caenorhabditis
           elegans GN=kin-2 PE=2 SV=3
          Length = 366

 Score = 35.4 bits (80), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 245 TGLKMKILKGSFDDEEKEIVEIPTEDAYRMAMKSMLR----WVKLNMDRKKTRVFFTSMS 300
           TG+  + +K   DD E + V IP +DA R +++S +R    +  L  D +KT   + +M 
Sbjct: 84  TGISAEPIKE--DDTEYKKVVIPKDDATRRSLESAMRKNLLFAHLEEDEQKT--MYDAMF 139

Query: 301 P---SHGKSIDWGGEPGKNCY 318
           P   S G++I   GE G N Y
Sbjct: 140 PVEKSAGETIIEQGEEGDNFY 160


>sp|Q9LKG7|UGPA_ASTPN UTP--glucose-1-phosphate uridylyltransferase OS=Astragalus
           penduliflorus GN=UGP PE=2 SV=1
          Length = 471

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 108 GRPEKDYQYWRWQPHGCDLPSFNATLMLETL--RGKRMMFVGDSLNRGQYVSMVCLLHRL 165
           GR +KD   W    HG   PS + +  L+ L  +GK  +FV +S N G  V +  L H +
Sbjct: 182 GRTDKDG--WYPPGHGSMFPSLSNSGKLDALISQGKEYVFVANSDNLGAIVDLKILNHLV 239

Query: 166 IPENAKSMET 175
             +N   ME 
Sbjct: 240 AHKNEYCMEV 249


>sp|Q9UKN8|TF3C4_HUMAN General transcription factor 3C polypeptide 4 OS=Homo sapiens
           GN=GTF3C4 PE=1 SV=2
          Length = 822

 Score = 32.7 bits (73), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 110 PEKDYQYWRWQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCL 161
           P + ++Y  W P GCD    N   +L  L     + +  +LNR Q+V +V L
Sbjct: 160 PMRGFKYTSWSPMGCDA---NGRCLLAALTMDNRLTIQANLNRLQWVQLVDL 208


>sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptide 4 OS=Mus musculus
           GN=Gtf3c4 PE=1 SV=2
          Length = 817

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 110 PEKDYQYWRWQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCL 161
           P + ++Y  W P GCD    N   +L  L     + V  +LNR Q+V +V L
Sbjct: 156 PMRGFKYTSWSPMGCDA---NGRCLLAALTMDNRLTVQVNLNRLQWVQLVDL 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,003,139
Number of Sequences: 539616
Number of extensions: 7008381
Number of successful extensions: 13320
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13315
Number of HSP's gapped (non-prelim): 13
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)