BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014837
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 110/187 (58%), Gaps = 1/187 (0%)
Query: 228 SQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGK-IYQEEETLRVKLKPG 286
+Q A +++ PPV L +LEE+ G KK+ I+ + ++ DGK I E++ L +++K G
Sbjct: 2 AQEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG 61
Query: 287 WKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSL 346
WK+GTKITF +GD+ +PADIVF + +K H +F+R G D+ I L +AL GC++
Sbjct: 62 WKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTV 121
Query: 347 AVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQR 406
VP L + + F ++I P + + G+G+P PK KRGDL I F V FP + R
Sbjct: 122 NVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSR 181
Query: 407 HEAYTIL 413
+L
Sbjct: 182 TVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 1/181 (0%)
Query: 234 RRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGK-IYQEEETLRVKLKPGWKKGTK 292
+++ PPV L +LEE+ G KK+ I+ + ++ DGK I E++ L +++K GWK+GTK
Sbjct: 1 KKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTK 60
Query: 293 ITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLG 352
ITF +GD+ +PADIVF + +K H +F+R G D+ I L +AL GC++ VP L
Sbjct: 61 ITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLD 120
Query: 353 KEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTI 412
+ + F ++I P + + G+G+P PK KRGDL I F V FP + R +
Sbjct: 121 GRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 180
Query: 413 L 413
L
Sbjct: 181 L 181
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 238 PPVERKLTCTLEELCEGSVKKITINREIVSDDGK-IYQEEETLRVKLKPGWKKGTKITFE 296
PPV L +LEE+ G KK+ I+ + ++ DGK I E++ L +++K GWK+GTKITF
Sbjct: 3 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62
Query: 297 GKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKM 356
+GD+ +PADIVF + +K H +F+R G D+ I L +AL GC++ VP L +
Sbjct: 63 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122
Query: 357 NLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTIL 413
+ F ++I P + + G+G+P PK KRGDL I F V FP + R +L
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 241 ERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGD 300
E L TLEEL G KKI + R+ + K+ EE + V++KPGWK GTK+T+ G+GD
Sbjct: 7 EVPLLVTLEELYLGKRKKIKVTRKRFIEH-KVRNEENIVEVEIKPGWKDGTKLTYSGEGD 65
Query: 301 RK-PGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLS 359
++ PG P D+V I K HP F R L V IPLV+ALTG + V L + +
Sbjct: 66 QESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQIP 125
Query: 360 FDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQR 406
EI+ P K++ +G P + G++GDL + F + FP +L+ Q+
Sbjct: 126 IKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQK 172
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 240 VERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKG 299
V+ L +LE+L G K I R+ G E+ + ++LKPGWK GTKIT++ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGA--SEKTQIDIQLKPGWKAGTKITYKNQG 58
Query: 300 DRKPGY-LPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNL 358
D P + F I EK HP F+R GDDL + + ++L G S + + + L
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 359 SFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQR 406
S + + P GQGMP PK +RG+L +++ V++P +L++AQ+
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQK 166
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 240 VERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEET-LRVKLKPGWKKGTKITFEGK 298
V+ L +LE+L G K I R+ G E+T + ++LKPGWK GTKIT++ +
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK-----GPHGASEKTQIDIQLKPGWKAGTKITYKNQ 57
Query: 299 GDRKPGY-LPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMN 357
GD P + F I EK HP F+R GDDL + + ++L G S + + +
Sbjct: 58 GDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLP 117
Query: 358 LSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQR 406
LS + + P GQGMP PK +RG+L +++ V++P +L++AQ+
Sbjct: 118 LSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQK 166
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 250 ELCEGSVKKITINREIVSDDGK-IYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPA 308
++C G+ I S +GK + E + L V ++PG K G +I F+G+ D+ P +P
Sbjct: 84 DVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPG 143
Query: 309 DIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKE--KMNLSFDEIIYP 366
D+VF + E+ H F+R GDDL EI L+ A+ G A+ + + K+ + E+I P
Sbjct: 144 DVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP 203
Query: 367 DFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTN 400
KVI+G+GMP PK G G+L I+F ++ P N
Sbjct: 204 GMRKVIEGKGMPIPK-YGGYGNLIIKFTIKDPEN 236
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 322 FRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKE--KMNLSFDEIIYPDFEKVIQGQGMPK 379
F+R GDDL EI L+ A+ G A+ + + K+ + E+I P KVI+G+GMP
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 380 PKEEGKRGDLRIRFLVEFPTN 400
PK G G+L I+F ++FP N
Sbjct: 62 PK-YGGYGNLIIKFTIKFPEN 81
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 226 IFSQTTAARRKPPP-----VERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEE-ETL 279
+F Q RR+ +E ++ LEE + I+ N + + G I E +TL
Sbjct: 124 MFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTL 183
Query: 280 RVKLKPGWKKGTKITFEGKGDRKPGYLP-ADIVFSIDEKRHPLFRRTGDDLEIGVEIPLV 338
VK+ G G +I +G+G P D+ I HPLF G +LEI + +
Sbjct: 184 NVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPW 243
Query: 339 QALTGCSLAVPLLGKEKMNLS 359
+A G + VP L KE + L+
Sbjct: 244 EAALGAKVTVPTL-KESILLT 263
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 273 YQEEETLRVKLKPG-------------WKKGTKITFEGKGDRKPGYLPADIVFSID 315
YQE+ V +K G WK KIT GK + G++PA V +D
Sbjct: 10 YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 273 YQEEETLRVKLKPG-------------WKKGTKITFEGKGDRKPGYLPADIVFSID 315
YQE+ V +K G WK KIT GK + G++PA V +D
Sbjct: 15 YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 70
>pdb|3QFG|A Chain A, Structure Of A Putative Lipoprotein From Staphylococcus
Aureus Subsp. Aureus Nctc 8325
pdb|3QFG|B Chain B, Structure Of A Putative Lipoprotein From Staphylococcus
Aureus Subsp. Aureus Nctc 8325
Length = 242
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 111 HNQDQRSTSRKSGPLLLYEQSSDGSIRRGVRTTSSEST 148
HNQDQ + + +YE DG+I V S + T
Sbjct: 144 HNQDQIKKGKTAQAXFIYELRGDGNINLNVHKYSEDKT 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,334,051
Number of Sequences: 62578
Number of extensions: 396121
Number of successful extensions: 572
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 19
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)