BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014838
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2
SV=1
Length = 395
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 307/424 (72%), Positives = 328/424 (77%), Gaps = 43/424 (10%)
Query: 4 VVRVDPPSRVFPEP-----IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 58
+ R DPPSR+ PEP IDHFD LPDS+LLLVFNKIGDVKALGRCCVVSRRFHSLVPQ
Sbjct: 5 IPRSDPPSRIHPEPPQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 64
Query: 59 VDNVVVRVDCVISDDDSSSSSSEKSRSPFSN-----LFRYVFGGIVKPFQALGQLLGAKR 113
VDNVVVRVDCVISDDDSSS SS KSRS S +FR V GGIVKP QALGQ LG KR
Sbjct: 65 VDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKR 124
Query: 114 TQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKN 173
+ + SGS ++ S D E++QGGVTHHSPTQVLKN
Sbjct: 125 SSS------------------SCGGSGSSSSSLSISGDDDGGEIEQGGVTHHSPTQVLKN 166
Query: 174 FNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATD 233
F+EIR+LRIELPSGELGIDDGVLLKWRA+FGSTLDNCVILGA+SV+
Sbjct: 167 FDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVI------------PP 214
Query: 234 LPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQ 293
P S ++ +DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQ
Sbjct: 215 NPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQ 274
Query: 294 PIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAP 353
PIIAEHKTLDSLVLTD+DGQGVLCMNR+QLEELRVKPL+ASSASKRTLVPALNMRLWYAP
Sbjct: 275 PIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASSASKRTLVPALNMRLWYAP 334
Query: 354 YLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLE 413
LELPDG VLKGATLVAIRPSE SKKEVSD SWV SAFEEPY TAAKMLVKRRTYCLE
Sbjct: 335 TLELPDGTVLKGATLVAIRPSE---SKKEVSDISWVSSAFEEPYETAAKMLVKRRTYCLE 391
Query: 414 MNSF 417
MNSF
Sbjct: 392 MNSF 395
>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2
SV=1
Length = 380
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/414 (69%), Positives = 315/414 (76%), Gaps = 53/414 (12%)
Query: 11 SRVFPEP--IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDC 68
SR+ PEP IDHFD LPDS+LLL+FN IGDVKALGRC VVS+RFHSL+PQV+NV VRVDC
Sbjct: 13 SRIHPEPQEIDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDC 72
Query: 69 VISDDDSSSSSSEKSRSPFSN-----LFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHL 123
VISDDDSSS S+K RS + +FR VF KP QALGQ L KR+
Sbjct: 73 VISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL--KRSG-------- 118
Query: 124 TTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIE 183
+SS + S+ S DD E++QGGVTHHSPTQVLKNF+EI+FL+IE
Sbjct: 119 -----------SSSLPSGSSPSSLLISGGDDGEIEQGGVTHHSPTQVLKNFDEIKFLKIE 167
Query: 184 LPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNN 243
LPSGELGIDDGVLLKWRA+FGSTL+NCVILGA+SV + N++
Sbjct: 168 LPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV------------------IPPTNSD 209
Query: 244 SNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLD 303
++ A +DNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLD
Sbjct: 210 KTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLD 269
Query: 304 SLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVL 363
SLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAP LELPDG VL
Sbjct: 270 SLVLTDVDGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPSLELPDGTVL 329
Query: 364 KGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
KGATLVAIRPSE SKKEV D SWV SAF+EPYG AAKMLVKRRTYCLEMNSF
Sbjct: 330 KGATLVAIRPSE---SKKEVCDVSWVSSAFDEPYGVAAKMLVKRRTYCLEMNSF 380
>sp|Q9C534|FB19_ARATH F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2
SV=1
Length = 379
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 268/436 (61%), Positives = 305/436 (69%), Gaps = 76/436 (17%)
Query: 1 MNGVVRVDPPSRVFPEP-----IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSL 55
M+ ++R DP SR+ PEP DHFD LPDS+LLL+F+K+ DVK LGRCC+VSRRFHSL
Sbjct: 1 MSYLLRSDPVSRIHPEPQSLTSFDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSL 60
Query: 56 VPQVDNVVVRVDCVI--------------SDDDSSSSSSEKSRSPFSNLFRYVFGGIVKP 101
VP V+NV+VRVDCVI S + +S S + + FS LFR VF I KP
Sbjct: 61 VPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKP 120
Query: 102 FQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGG 161
FQ LGQ+LG KR+ + + D+ G
Sbjct: 121 FQMLGQILGPKRSSSSFDASFSAIN-------------------------------DEIG 149
Query: 162 VTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNN 221
VTHHSPTQVLKNF EIRFL+IELP+GELGI+DG+LLKWRADFGSTLDNC+ILGA+SV+
Sbjct: 150 VTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGASSVIQ- 208
Query: 222 VLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISS 281
SN+ + N +DNG+IPESFYTNGGLKLRVVWTISS
Sbjct: 209 ----------------------SNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISS 246
Query: 282 LIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTL 341
LIAASARHYLLQPII EHK+LD LVL+DADGQGVLCMNREQLEELRV PLSASSASKRTL
Sbjct: 247 LIAASARHYLLQPIINEHKSLDRLVLSDADGQGVLCMNREQLEELRVTPLSASSASKRTL 306
Query: 342 VPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAA 401
VPALNMRLWYAP L+LPDG VLKGATLVAIRPSE SKKEV D SW+ AFEEP+GT A
Sbjct: 307 VPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE---SKKEVCDASWLSDAFEEPFGTVA 363
Query: 402 KMLVKRRTYCLEMNSF 417
KML+KRRTYCLEMNSF
Sbjct: 364 KMLIKRRTYCLEMNSF 379
>sp|Q9LM18|FB303_ARATH F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2
SV=1
Length = 314
Score = 191 bits (485), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 204/409 (49%), Gaps = 104/409 (25%)
Query: 18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSS 77
+D FD LPD +++ + NK+GDVK L RC +S+RF+SLVPQ +++ +R+D +SD
Sbjct: 1 MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVSD----- 55
Query: 78 SSSEKSRSPF-SNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCAS 136
SP +++FR +F G+V + + +T + +P+
Sbjct: 56 -------SPVVTSIFRSLFNGLV--------------SLLSKPAKPITITTLSPSL---- 90
Query: 137 SSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVL 196
P ++L F+ IR L +ELP G++ ++ G
Sbjct: 91 ------------------------------PFKILSRFDRIRNLDVELPGGDVKLEKGAA 120
Query: 197 LKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATD 256
+KW+A+FG TL +CVI+ S G P V G +D
Sbjct: 121 VKWKAEFGKTLKSCVIVAFRSA-----------GTVSSPVA-------------VEGESD 156
Query: 257 DNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVL 316
F T GLK RVVWTIS+L+AAS+RHYL++ ++ EH+ ++SLV+ D + +G +
Sbjct: 157 AE------FVT--GLKTRVVWTISALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTV 208
Query: 317 CMNREQLEEL-----RVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAI 371
MN E L+EL RV+ +KR++VP++ M + +AP L+L G+ L+ ATLV +
Sbjct: 209 VMNEEGLKELRNTEARVEDEERVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIV 268
Query: 372 RPSE---QSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
RPS + E++ ++VG YG A L+K + LEMNSF
Sbjct: 269 RPSGADFEVGDDAELATEAFVGDCM---YGEAVVALLKCKKNALEMNSF 314
>sp|Q9C9S2|FB91_ARATH F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1
SV=1
Length = 334
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 201/407 (49%), Gaps = 80/407 (19%)
Query: 18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSS 77
+D FD +PD V++ + N++GDVK L RC VS+RF+SL Q +++++++D ++ +S S
Sbjct: 1 MDAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATESDS 60
Query: 78 SSSEKSRSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASS 137
SP ++ FR +F I G P F +
Sbjct: 61 EID----SPIASFFRSLFKSI---------------------------HGLLPPIFSKPA 89
Query: 138 SSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLL 197
+S T S +P Q+L F IR L +EL G++ ++ G +
Sbjct: 90 NSDEILTRS-----------------PKTPAQILSGFERIRNLEVELYGGDVKLEKGAAV 132
Query: 198 KWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDD 257
KW+A+FG TL +CVI+ S N A AT+ V V+G +
Sbjct: 133 KWKAEFGKTLKSCVIVAFRSATVNTSA------ATEAAAV-------------VDGVVES 173
Query: 258 NGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLC 317
+ GLK RVVWTIS+L+AAS RHYL++ ++ +HK ++ L++ D+DG+G +
Sbjct: 174 DSEFV------CGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVV 227
Query: 318 MNREQLEELRVKPL-----SASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIR 372
M+ ++E R + + +RT+VP++ M + +AP L L G+ L+ ATLV +R
Sbjct: 228 MDAAGMKEYRETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVR 287
Query: 373 PSEQSASKKEVS--DGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
P+ ++ +V ++ G + YG A L+KRR LEMNSF
Sbjct: 288 PTGVASDDNDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,389,019
Number of Sequences: 539616
Number of extensions: 6542622
Number of successful extensions: 87627
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 37031
Number of HSP's gapped (non-prelim): 38448
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)