Query 014838
Match_columns 417
No_of_seqs 60 out of 62
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 09:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12937 F-box-like: F-box-lik 97.7 7.1E-06 1.5E-10 58.5 0.2 35 21-56 1-35 (47)
2 smart00256 FBOX A Receptor for 97.1 0.00015 3.3E-09 48.6 0.6 34 24-58 1-34 (41)
3 PF00646 F-box: F-box domain; 96.9 9.9E-05 2.1E-09 52.0 -1.5 36 21-57 3-38 (48)
4 KOG2997 F-box protein FBX9 [Ge 94.1 0.016 3.4E-07 59.1 0.4 38 19-56 105-146 (366)
5 KOG2120 SCF ubiquitin ligase, 93.8 0.034 7.5E-07 57.1 2.1 49 17-67 94-142 (419)
6 KOG4341 F-box protein containi 70.6 1.8 4E-05 46.1 0.9 37 22-59 73-109 (483)
7 PRK10963 hypothetical protein; 42.0 14 0.00031 34.8 1.5 42 286-328 7-51 (223)
8 PLN03215 ascorbic acid mannose 33.3 21 0.00045 37.1 1.2 38 22-59 5-42 (373)
9 PF14218 COP23: Circadian osci 31.1 15 0.00033 32.4 -0.1 29 39-67 36-64 (132)
10 KOG4408 Putative Mg2+ and Co2+ 30.7 9.1 0.0002 40.0 -1.8 84 20-108 7-95 (386)
11 KOG0281 Beta-TrCP (transducin 26.3 24 0.00051 37.6 0.2 90 19-110 73-181 (499)
12 PF07436 Curto_V3: Curtovirus 23.5 7.3 0.00016 33.2 -3.3 54 22-75 2-60 (87)
13 PF04340 DUF484: Protein of un 23.0 18 0.00039 33.7 -1.2 47 281-328 5-54 (225)
14 cd03033 ArsC_15kD Arsenate Red 21.8 96 0.0021 26.7 3.0 32 294-326 79-111 (113)
15 TIGR01617 arsC_related transcr 21.1 1.1E+02 0.0023 25.8 3.2 34 293-326 81-115 (117)
No 1
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.74 E-value=7.1e-06 Score=58.51 Aligned_cols=35 Identities=34% Similarity=0.644 Sum_probs=30.7
Q ss_pred CCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838 21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56 (417)
Q Consensus 21 FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV 56 (417)
...||++++..||+-+ |++.|.+|+.|||+|+.++
T Consensus 1 i~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 3689999999999988 9999999999999999887
No 2
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.11 E-value=0.00015 Score=48.61 Aligned_cols=34 Identities=41% Similarity=0.562 Sum_probs=30.8
Q ss_pred CChhHHHHHHhhccCccccchhhhhcccccccccc
Q 014838 24 LPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 58 (417)
Q Consensus 24 LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpq 58 (417)
||++++..||..+ |.+.+.+|+.|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999888 679999999999999998753
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=96.95 E-value=9.9e-05 Score=51.99 Aligned_cols=36 Identities=36% Similarity=0.557 Sum_probs=29.4
Q ss_pred CCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838 21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP 57 (417)
Q Consensus 21 FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp 57 (417)
|.+||++++..||+++. .+++.+|+.|||+|++++-
T Consensus 3 ~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred HHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHc
Confidence 67899999999999985 5669999999999999874
No 4
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.12 E-value=0.016 Score=59.15 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=34.8
Q ss_pred CCCCCCChhHHHHHHhhcc----Cccccchhhhhcccccccc
Q 014838 19 DHFDRLPDSVLLLVFNKIG----DVKALGRCCVVSRRFHSLV 56 (417)
Q Consensus 19 D~FD~LPDsLlLlIFNKI~----DvKsLgRCsaVSKRF~SLV 56 (417)
++|..|||++|+.||.++= |.++|++|+.|||.|.-.+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 7899999999999999976 9999999999999998654
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.034 Score=57.10 Aligned_cols=49 Identities=31% Similarity=0.473 Sum_probs=40.2
Q ss_pred CCCCCCCCChhHHHHHHhhccCccccchhhhhcccccccccceeeEEEEEe
Q 014838 17 PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVD 67 (417)
Q Consensus 17 ~~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpqvdnV~vrvD 67 (417)
|.-.||+||||+++.||.-+. -|+|-+-+.|+|||+.+... +.+-.+.|
T Consensus 94 pgv~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~d-e~lW~~lD 142 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASD-ESLWQTLD 142 (419)
T ss_pred CCCCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcccc-ccceeeec
Confidence 335699999999999998776 58899999999999998875 44555665
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.59 E-value=1.8 Score=46.10 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=32.3
Q ss_pred CCCChhHHHHHHhhccCccccchhhhhcccccccccce
Q 014838 22 DRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQV 59 (417)
Q Consensus 22 D~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpqv 59 (417)
..||.+|+++||+-+ |+|+|.||..|++=||-++--.
T Consensus 73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhcc
Confidence 358999999999854 9999999999999999988543
No 7
>PRK10963 hypothetical protein; Provisional
Probab=41.96 E-value=14 Score=34.81 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHH--HHHhhccc-ccceeeeecCCCceEEecHHHHHHHhc
Q 014838 286 SARHYLLQ--PIIAEHKT-LDSLVLTDADGQGVLCMNREQLEELRV 328 (417)
Q Consensus 286 SaRHYLLq--~II~eH~t-LesLvLtDadgQG~L~M~~eqL~ElR~ 328 (417)
--++||.+ +...+||. |+.|.+....| |++.+-..|++.||+
T Consensus 7 ~V~~yL~~~PdFf~~h~~Ll~~L~lph~~~-gaVSL~ErQ~~~LR~ 51 (223)
T PRK10963 7 AVVDYLLQNPDFFIRNARLVEQMRVPHPVR-GTVSLVEWQMARQRN 51 (223)
T ss_pred HHHHHHHHCchHHhhCHHHHHhccCCCCCC-CeecHHHHHHHHHHH
Confidence 34778887 57888888 89999997755 899999999998885
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=33.33 E-value=21 Score=37.11 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHhhccCccccchhhhhcccccccccce
Q 014838 22 DRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQV 59 (417)
Q Consensus 22 D~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpqv 59 (417)
-.||++||.+|.+++...-.+.|=.+|||-|.+=|+++
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 36999999999999987778999999999999988863
No 9
>PF14218 COP23: Circadian oscillating protein COP23
Probab=31.15 E-value=15 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.8
Q ss_pred ccccchhhhhcccccccccceeeEEEEEe
Q 014838 39 VKALGRCCVVSRRFHSLVPQVDNVVVRVD 67 (417)
Q Consensus 39 vKsLgRCsaVSKRF~SLVpqvdnV~vrvD 67 (417)
.-.--||-.||.||..+.+.-....++..
T Consensus 36 ~tp~~RC~~VS~Rl~~~~~~~~l~~l~~G 64 (132)
T PF14218_consen 36 YTPQKRCQEVSQRLQNYYDNGGLNYLTTG 64 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHccCCcEEEec
Confidence 34456999999999999999555555543
No 10
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=30.74 E-value=9.1 Score=40.03 Aligned_cols=84 Identities=25% Similarity=0.390 Sum_probs=49.5
Q ss_pred CCCCCChhHHHHHHhhccCccccchhhhhcccccccccceee---EEEEEeeeecCCCC-CCCCCCCCCCcchhhhHHHh
Q 014838 20 HFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDN---VVVRVDCVISDDDS-SSSSSEKSRSPFSNLFRYVF 95 (417)
Q Consensus 20 ~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpqvdn---V~vrvDcVis~d~~-~~~s~~~~r~~~shl~r~v~ 95 (417)
-+..+|+.+++.|++++ +.+.|++|+.||||...+-..... -+=+ +--|+.++. ....+-+ .|++-++-. .
T Consensus 7 ~le~~~~~~l~~vls~~-~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k-~l~is~e~~~~~~etgq--sF~h~~f~y-v 81 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFL-LYRDLINCAYVSRRLKELGSHLPLWNRPCKK-YLLISEEEKTQKYETGQ--SFLHDTFGY-V 81 (386)
T ss_pred chhhcccccceeeeccc-chhhhhcceeechHHhhhhhccccccccccc-cccccccccCCcccccc--eeeeeeccc-c
Confidence 46678999999999987 578899999999998755444332 1111 113444422 1122222 243333333 4
Q ss_pred hhccchhhh-hhhh
Q 014838 96 GGIVKPFQA-LGQL 108 (417)
Q Consensus 96 ~~I~Kpfq~-L~~~ 108 (417)
|-++=|+++ |.+-
T Consensus 82 gvv~~~w~arlk~w 95 (386)
T KOG4408|consen 82 GVVLFPWAARLKDW 95 (386)
T ss_pred eEEEEechHhhhhh
Confidence 556667777 5544
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=26.33 E-value=24 Score=37.61 Aligned_cols=90 Identities=14% Similarity=0.337 Sum_probs=55.6
Q ss_pred CCCCCCC----hhHHHHHHhhccCccccchhhhhcccccccccc-------eeeEEEEEeeeec--CCCC-----CCCCC
Q 014838 19 DHFDRLP----DSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ-------VDNVVVRVDCVIS--DDDS-----SSSSS 80 (417)
Q Consensus 19 D~FD~LP----DsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpq-------vdnV~vrvDcVis--~d~~-----~~~s~ 80 (417)
|.-..|| |.+.+.||+-+ |.++|.-|-.|||+|.-+..- ++ =-+|.|..-- .+-. ...+-
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l~dg~~WKkLie-~~vr~dslWrgl~e~rqw~~~lf~~r 150 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVLSDGMLWKKLIE-RMVRTDSLWRGLSERRQWDQYLFKNR 150 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHhccchHHHHHHH-HhcchHHHHhhhhhccCcchhhccCC
Confidence 8888999 99999999876 899999999999999865431 00 0122221000 0000 11111
Q ss_pred CCCCCcc-hhhhHHHhhhccchhhhhhhhhc
Q 014838 81 EKSRSPF-SNLFRYVFGGIVKPFQALGQLLG 110 (417)
Q Consensus 81 ~~~r~~~-shl~r~v~~~I~Kpfq~L~~~~~ 110 (417)
+...|+- +.+.+++++.|+|-++++.+--.
T Consensus 151 ~~~~~~~~n~f~~~l~pki~~di~~idsNWr 181 (499)
T KOG0281|consen 151 PNDGGFPPNSFYRLLYPKIIQDIETIESNWR 181 (499)
T ss_pred CCcCCcCCCcchhhhhHHHHHHHhhhhcchh
Confidence 1112233 45678888889999999885433
No 12
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=23.48 E-value=7.3 Score=33.24 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCChhHHHH-HHhhcc----CccccchhhhhcccccccccceeeEEEEEeeeecCCCC
Q 014838 22 DRLPDSVLLL-VFNKIG----DVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDS 75 (417)
Q Consensus 22 D~LPDsLlLl-IFNKI~----DvKsLgRCsaVSKRF~SLVpqvdnV~vrvDcVis~d~~ 75 (417)
-+|||-|-|+ ||+-+- ..---..--.+||...+|++-+|.+++++-.|+-....
T Consensus 2 VClPDWlFLlFifsillQsgtNfYGTfqSgsiS~kLS~l~sr~DeLFl~iQQvvy~R~~ 60 (87)
T PF07436_consen 2 VCLPDWLFLLFIFSILLQSGTNFYGTFQSGSISRKLSSLSSRFDELFLKIQQVVYTRYP 60 (87)
T ss_pred ccchhHHHHHHHHHHHHhcCCceeeeeccchHHHHHHHHHHHHHHHHHHHHHhheeccC
Confidence 4799998654 565442 22222344578999999999999999999998755543
No 13
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=23.02 E-value=18 Score=33.70 Aligned_cols=47 Identities=34% Similarity=0.480 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHH--HHHhhccc-ccceeeeecCCCceEEecHHHHHHHhc
Q 014838 281 SLIAASARHYLLQ--PIIAEHKT-LDSLVLTDADGQGVLCMNREQLEELRV 328 (417)
Q Consensus 281 sLIAASaRHYLLq--~II~eH~t-LesLvLtDadgQG~L~M~~eqL~ElR~ 328 (417)
.|=+..-++||.+ +...+||+ |+.|.+-...| |++.+-..|++-||+
T Consensus 5 ~l~~~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~-~avSL~erQ~~~LR~ 54 (225)
T PF04340_consen 5 ALDAEDVAAYLRQHPDFFERHPELLAELRLPHPSG-GAVSLVERQLERLRE 54 (225)
T ss_dssp -------------------------------------HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCcHHHHhCHHHHHHcCCCCCCC-CcccHHHHHHHHHHH
Confidence 4556677889987 58899998 89999987765 799999888888885
No 14
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=21.83 E-value=96 Score=26.66 Aligned_cols=32 Identities=0% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHhhccc-ccceeeeecCCCceEEecHHHHHHH
Q 014838 294 PIIAEHKT-LDSLVLTDADGQGVLCMNREQLEEL 326 (417)
Q Consensus 294 ~II~eH~t-LesLvLtDadgQG~L~M~~eqL~El 326 (417)
++|++||+ +++=+++| +|+-++.-+.|++++|
T Consensus 79 ~ll~~~P~LikRPIv~~-~~~~~vG~~~e~~~~~ 111 (113)
T cd03033 79 ALMIADPLLIRRPLMQV-GDRRMVGFDTARVDAW 111 (113)
T ss_pred HHHHhCcceeeCCeEEE-CCEEEecCCHHHHHHH
Confidence 56788998 78888886 5567777777878775
No 15
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=21.10 E-value=1.1e+02 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=26.2
Q ss_pred HHHHhhccc-ccceeeeecCCCceEEecHHHHHHH
Q 014838 293 QPIIAEHKT-LDSLVLTDADGQGVLCMNREQLEEL 326 (417)
Q Consensus 293 q~II~eH~t-LesLvLtDadgQG~L~M~~eqL~El 326 (417)
-++|.+||+ |++=++.+.+|+=++.-+.|+.++|
T Consensus 81 ~~~i~~~p~LikRPIi~~~~~~~~vG~~~e~~~~~ 115 (117)
T TIGR01617 81 LELLAEDPALLRRPLIVDTKNRLLIGFKSESIEEF 115 (117)
T ss_pred HHHHHhCcceEecCEEEeCCceEEecCCHHHHHHh
Confidence 367888898 8888999877666677777777775
Done!