Query 014838
Match_columns 417
No_of_seqs 60 out of 62
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 18:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.0 1.2E-06 4E-11 62.5 1.2 40 17-57 5-44 (53)
2 3v7d_B Cell division control p 97.1 5E-05 1.7E-09 68.9 -1.4 39 19-58 13-51 (464)
3 2e31_A FBS1, F-box only protei 97.1 0.00013 4.4E-09 70.2 1.2 38 19-57 49-87 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.0002 6.7E-09 65.3 0.7 39 18-57 16-54 (445)
5 2p1m_B Transport inhibitor res 96.6 0.00036 1.2E-08 66.4 0.4 38 18-55 3-40 (594)
6 1p22_A F-BOX/WD-repeat protein 96.5 0.00027 9.2E-09 64.6 -1.4 39 18-57 8-50 (435)
7 2ast_B S-phase kinase-associat 96.2 0.00096 3.3E-08 59.2 0.8 39 17-56 5-43 (336)
8 3ogk_B Coronatine-insensitive 95.3 0.0031 1.1E-07 60.1 0.2 34 23-56 15-48 (592)
9 3l2o_B F-box only protein 4; s 93.1 0.011 3.9E-07 57.8 -1.1 36 20-56 4-39 (312)
10 2kjr_A CG11242; UBL, ubiquitin 30.3 44 0.0015 26.6 3.6 63 302-373 15-95 (95)
11 3lif_A Putative diguanylate cy 25.5 48 0.0016 28.1 3.2 29 288-317 56-84 (254)
12 2inp_L Phenol hydroxylase comp 21.0 83 0.0028 25.7 3.6 38 291-331 18-61 (89)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.02 E-value=1.2e-06 Score=62.45 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=33.8
Q ss_pred CCCCCCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838 17 PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP 57 (417)
Q Consensus 17 ~~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp 57 (417)
+.+.|+.|||+++..||..+ |++.|.||+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999998 68999999999999999874
No 2
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.08 E-value=5e-05 Score=68.90 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=36.7
Q ss_pred CCCCCCChhHHHHHHhhccCccccchhhhhcccccccccc
Q 014838 19 DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 58 (417)
Q Consensus 19 D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpq 58 (417)
|.+..||+++++.||+-+ |+++|.||+.|||+|+.|+-.
T Consensus 13 d~~~~lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHSCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 899999999999999988 999999999999999998754
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.06 E-value=0.00013 Score=70.19 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=35.5
Q ss_pred CCCCCCChhHHHHHHhhccCccccc-hhhhhccccccccc
Q 014838 19 DHFDRLPDSVLLLVFNKIGDVKALG-RCCVVSRRFHSLVP 57 (417)
Q Consensus 19 D~FD~LPDsLlLlIFNKI~DvKsLg-RCsaVSKRF~SLVp 57 (417)
.....|||+|++.||..+ ++++|. ||+.|||||+.|+.
T Consensus 49 ~~~~~LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAEL-PATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhc
Confidence 678999999999999998 789999 99999999999975
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.88 E-value=0.0002 Score=65.28 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCCCCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838 18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP 57 (417)
Q Consensus 18 ~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp 57 (417)
.|.|+.||++|++.||.-+ |+++|.||+.|||+|+.++.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcC
Confidence 4999999999999999988 79999999999999998874
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.62 E-value=0.00036 Score=66.44 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCCCCCChhHHHHHHhhccCccccchhhhhccccccc
Q 014838 18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSL 55 (417)
Q Consensus 18 ~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SL 55 (417)
.|.|+.|||+++..||..+.+.+.+.||+.|||||+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999987
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.48 E-value=0.00027 Score=64.58 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=35.7
Q ss_pred CCCCCCCChh----HHHHHHhhccCccccchhhhhccccccccc
Q 014838 18 IDHFDRLPDS----VLLLVFNKIGDVKALGRCCVVSRRFHSLVP 57 (417)
Q Consensus 18 ~D~FD~LPDs----LlLlIFNKI~DvKsLgRCsaVSKRF~SLVp 57 (417)
.|.|..||++ |++.||.-+ |+++|.||+.|||||+.++-
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 3999999999 999999887 79999999999999998873
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.24 E-value=0.00096 Score=59.18 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCCCCCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838 17 PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56 (417)
Q Consensus 17 ~~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV 56 (417)
+...|+.|||+++..||..+ |.+.+.||+.|||||+.++
T Consensus 5 ~~~~~~~LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHH
T ss_pred ccCChhhCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999988 5568999999999999997
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.30 E-value=0.0031 Score=60.15 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838 23 RLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56 (417)
Q Consensus 23 ~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV 56 (417)
.|||+++..||..+.+.|.+.+|+.|||||+.+.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 6999999999999999999999999999998874
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.13 E-value=0.011 Score=57.83 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838 20 HFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56 (417)
Q Consensus 20 ~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV 56 (417)
.||.||+++++.||.-+ ++|.|.||..|||+|+.++
T Consensus 4 ~l~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHHHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Confidence 37899999999999877 5777999999999999886
No 10
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=30.29 E-value=44 Score=26.59 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=38.3
Q ss_pred ccceeeeecCCCceEE-------ecHHHHHHHhcCcCCcccCCCCcccceeeeeeccc--cee--ec-CCceee------
Q 014838 302 LDSLVLTDADGQGVLC-------MNREQLEELRVKPLSASSASKRTLVPALNMRLWYA--PYL--EL-PDGVVL------ 363 (417)
Q Consensus 302 LesLvLtDadgQG~L~-------M~~eqL~ElR~kpl~as~~s~RT~VPalnMkLwYa--P~L--EL-p~G~~l------ 363 (417)
+=+|.++-..++|... +.=++||+. -..+|-+|+=+|||.|. +-. .| .|+..|
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~k---------I~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTK---------LEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHH---------HHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHH---------HHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 4456667666665421 233444443 34568899999999998 321 33 455433
Q ss_pred ecceEEEEcc
Q 014838 364 KGATLVAIRP 373 (417)
Q Consensus 364 kGATLVvIrP 373 (417)
+|+||.++.|
T Consensus 86 ~gstihlvD~ 95 (95)
T 2kjr_A 86 DGLRLHVVDS 95 (95)
T ss_dssp SSCEEEEEEC
T ss_pred CCCEEEEECC
Confidence 6788877754
No 11
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=25.51 E-value=48 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcccccceeeeecCCCceEE
Q 014838 288 RHYLLQPIIAEHKTLDSLVLTDADGQGVLC 317 (417)
Q Consensus 288 RHYLLq~II~eH~tLesLvLtDadgQG~L~ 317 (417)
-+-+|+.+++.+|.+..+.+.|+||+ +.+
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~ 84 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQ-LTY 84 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSB-EEE
T ss_pred HHHHHHHHHhcCCccceEEEECCCCC-Eec
Confidence 45678999999999999999999999 665
No 12
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A
Probab=20.98 E-value=83 Score=25.65 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=29.5
Q ss_pred HHHHHHhhcccccceeeeec------CCCceEEecHHHHHHHhcCcC
Q 014838 291 LLQPIIAEHKTLDSLVLTDA------DGQGVLCMNREQLEELRVKPL 331 (417)
Q Consensus 291 LLq~II~eH~tLesLvLtDa------dgQG~L~M~~eqL~ElR~kpl 331 (417)
....|.+|+|. ++++|. |+.|.|.++++.++|.=-+|.
T Consensus 18 vVeai~~dNP~---~~V~d~~a~vrI~a~g~l~i~~~tieE~LGr~~ 61 (89)
T 2inp_L 18 LAEAVMEDNPD---AEMQHQPAMIRIQAEKRLVINRETMEEKLGRDW 61 (89)
T ss_dssp HHHHHHSSCTT---CEEEEETTEEEEECBSEEEECHHHHHHHHTSCC
T ss_pred HHHHHHhHCcC---cEEEecCCEEEEecCCeEEEEHHHHHHHhCCCC
Confidence 44567799998 566664 679999999999999865554
Done!