Your job contains 1 sequence.
>014839
MQQHRLKQQTMMQQQSLYQYHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVT
NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA
YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS
FRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAE
DGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFV
RYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSSTPLPPPPAPHLPGFSATDLA
AYERQIALSKIAGAQALMHPQAQHALKLGMGAAGASQAIYDSSGFQNVATTQQLMYY
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014839
(417 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 1468 2.0e-150 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 1437 3.9e-147 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 1376 1.1e-140 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 584 9.6e-57 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 580 2.5e-56 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 452 5.4e-55 2
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 452 5.4e-55 2
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 376 6.2e-55 3
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 373 6.2e-55 3
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 373 6.2e-55 3
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 373 6.2e-55 3
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 373 6.2e-55 3
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 373 6.2e-55 3
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 373 6.2e-55 3
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 373 6.2e-55 3
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 373 6.2e-55 3
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 448 3.7e-54 2
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 445 6.1e-54 2
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 442 2.6e-53 2
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 420 3.3e-51 2
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 420 3.3e-51 2
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 416 3.3e-51 2
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 416 6.8e-51 2
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 416 8.7e-51 2
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 416 8.7e-51 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 445 1.4e-48 2
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 445 2.3e-48 2
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 464 5.0e-44 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 362 1.6e-43 2
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 458 2.2e-43 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 350 1.8e-42 2
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 365 3.6e-42 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 412 1.6e-38 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 406 7.0e-38 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 352 1.3e-34 2
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 353 2.9e-32 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 349 7.7e-32 1
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 348 9.8e-32 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 339 8.8e-31 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 325 2.7e-29 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 309 1.3e-27 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 242 3.4e-27 2
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 250 5.6e-27 2
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 232 2.3e-26 2
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 292 8.4e-26 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 247 8.6e-26 2
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 294 1.1e-25 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 233 2.0e-25 2
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 237 2.6e-25 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 247 1.1e-24 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 249 1.2e-24 2
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 280 1.6e-24 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 244 2.4e-24 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 244 2.4e-24 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 244 2.4e-24 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 244 2.4e-24 2
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 234 2.5e-24 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 244 2.5e-24 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 286 2.8e-24 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 246 3.1e-24 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 241 6.0e-24 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 241 6.0e-24 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 242 6.0e-24 3
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 247 6.6e-24 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 247 6.9e-24 2
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 282 7.2e-24 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 246 7.5e-24 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 240 7.9e-24 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 242 1.5e-23 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 225 2.6e-23 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 247 2.8e-23 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 232 3.1e-23 3
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 237 3.1e-23 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 235 3.5e-23 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 244 3.5e-23 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 235 3.9e-23 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 235 3.9e-23 3
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 207 5.0e-23 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 221 8.0e-23 2
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 272 8.1e-23 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 231 1.3e-22 3
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 235 1.5e-22 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 231 1.5e-22 3
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 230 1.6e-22 3
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 204 1.8e-22 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 230 1.9e-22 3
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 230 1.9e-22 3
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 235 2.0e-22 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 230 2.1e-22 3
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 230 2.4e-22 3
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 228 2.7e-22 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 216 3.3e-22 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 229 3.4e-22 3
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 269 3.7e-22 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 269 3.7e-22 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 269 3.7e-22 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 269 3.7e-22 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 269 3.7e-22 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 269 3.7e-22 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 227 3.7e-22 2
WARNING: Descriptions of 995 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 285/400 (71%), Positives = 322/400 (80%)
Query: 21 HPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI 80
HP LLA PQIEPI SGNLPP FD STCRSVYVGNIH QVT LLQEVF+ TGP+E CKLI
Sbjct: 27 HPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLI 86
Query: 81 KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDL 140
+K+KSSYGFV YFDRRSA LAI++LNGRH+FGQPIKVNWAYAS QREDTS HFN+FVGDL
Sbjct: 87 RKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDL 146
Query: 141 SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200
SPEVTDA LF CFSV+PTCSDARVMWDQKTGRSRGFGFVSFRNQ+DAQ+AI+++ GKWLG
Sbjct: 147 SPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLG 206
Query: 201 NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTV 260
+RQIRCNWA KGATSG++KQSSDSKSVVELT+G+S EDG++ +N +APENN QYTTV
Sbjct: 207 SRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVS----EDGKDTTNGEAPENNAQYTTV 262
Query: 261 YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR-I 319
YVGNL+ EV+ VDLHRHFH+L G IE+VRVQRDKGFGFVRYSTH EAALAIQMGN
Sbjct: 263 YVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSY 322
Query: 320 LCGKPIKCSWXXXXXXXXXXXXXXXXXXXXXXXXFSATDLAAYERQIALSKIAGAQALMH 379
L G+ +KCSW FSA+DL AYERQ+A+SK+AG +MH
Sbjct: 323 LSGRQMKCSWGSKPTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMH 382
Query: 380 -PQAQHALK-LGMGAAGASQAIYDSSGFQNVATTQQLMYY 417
PQ QHA K MGA G++QAIYD G+QN QQLMYY
Sbjct: 383 HPQGQHAFKQAAMGATGSNQAIYDG-GYQNA---QQLMYY 418
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
Identities = 280/400 (70%), Positives = 316/400 (79%)
Query: 21 HPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI 80
HP +LA PQ+EP+ SGNLPP FD STCRSVYVGNIH QVT LLQE+F+STGP+E KLI
Sbjct: 32 HPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLI 91
Query: 81 KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDL 140
+KDKSSYGFV YFDRRSAALAI++LNGRH+FGQPIKVNWAYA+ QREDTS HFN+FVGDL
Sbjct: 92 RKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDL 151
Query: 141 SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200
SPEVTDATL+ FSVF +CSDARVMWDQKTGRSRGFGFVSFRNQ+DAQ+AIN++NGKWL
Sbjct: 152 SPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLS 211
Query: 201 NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTV 260
+RQIRCNWA KGATSGD+K SSD KSVVELT G S EDG+E NE+ PENN Q+TTV
Sbjct: 212 SRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSS----EDGKETLNEETPENNSQFTTV 267
Query: 261 YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR-I 319
YVGNL+ EVT +DLHR+FHAL G IE+VRVQRDKGFGFVRY+THPEAALAIQMGN +
Sbjct: 268 YVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPY 327
Query: 320 LCGKPIKCSWXXXXXXXXXXXXXXXXXXXXXXXXFSATDLAAYERQIALSKIAGAQALMH 379
L + IKCSW SA DL YERQ+ALSK+A ALMH
Sbjct: 328 LFNRQIKCSWGNKPTPPGTASNPLPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMH 387
Query: 380 PQAQHALKL--GMGAAGASQAIYDSSGFQNVATTQQLMYY 417
Q QH L+ G+ AAGA+ A+YD GFQNVA QQLMYY
Sbjct: 388 QQGQHPLRQAHGINAAGATAAMYDG-GFQNVAAAQQLMYY 426
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 272/406 (66%), Positives = 313/406 (77%)
Query: 21 HPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI 80
HP ++A PQ+EP+ SGNLPP FD +TCRSVY GNIH QVT LLQE+F+STGP+E CKLI
Sbjct: 36 HPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLI 95
Query: 81 KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDL 140
+KDKSSYGFV YFDRR A++AI+TLNGRHIFGQP+KVNWAYA+ QREDTS HFN+FVGDL
Sbjct: 96 RKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDL 155
Query: 141 SPEVTDATLFACFSVFPTCS----DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
SPEVTDA LF FS F +CS DARVMWDQKTGRSRGFGFVSFRNQ+DAQ+AIN++NG
Sbjct: 156 SPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 215
Query: 197 KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQ 256
KW+ +RQIRCNWA KGAT G++K SSD KSVVELTNG S EDG+E SNEDAPENNPQ
Sbjct: 216 KWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSS----EDGRELSNEDAPENNPQ 271
Query: 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 316
+TTVYVGNLS EVT +DLHR F+ L G IE+VRVQRDKGFGFVRY+TH EAALAIQMGN
Sbjct: 272 FTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGN 331
Query: 317 AR-ILCGKPIKCSWXXXXXXXXXXXXXXXXXXXXXXXXFSATDLAAYERQIALSKIAGAQ 375
A+ L + I+CSW SA DL AYERQ+AL+K
Sbjct: 332 AQPFLFSRQIRCSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAK----- 386
Query: 376 ALMHPQAQHALK---LGMGAAGASQAIYDSSGFQNVATT-QQLMYY 417
MHPQAQH+L+ LG+ AG + A+YD G+QNVA QQLMYY
Sbjct: 387 --MHPQAQHSLRQAGLGVNVAGGTAAMYDG-GYQNVAAAHQQLMYY 429
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 127/290 (43%), Positives = 180/290 (62%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALAIVT 104
R++YVG + +VT +L+++F +TG ++ K+I K K +YGFV+Y D +A A+ T
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQT 144
Query: 105 LNGRHIFGQPIKVNWAY---ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LNGR + I+VNWAY S+ +EDTS HF++FVGDLS EV D L FSVF + S+
Sbjct: 145 LNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSE 204
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA-AKGATSGDEKQ 220
ARVMWD KTGRSRG+GFV+FR++ DA+ A++ ++G+WLG+R IRCNWA KG S ++Q
Sbjct: 205 ARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQ 264
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY-TTVYVGNLSSEVTSVDLHRHFH 279
+ + + T F G + S E P Y TT YVGNL+ T+ D+ F
Sbjct: 265 AMSAVGMTPTTPFGHHHFPTHGMQ-SYEMVVNQTPAYQTTCYVGNLTPYTTANDVVPLFQ 323
Query: 280 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
G + + R Q D+GF F++ +H AA AI N + G+P+KCSW
Sbjct: 324 NF--GYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSW 371
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 126/292 (43%), Positives = 179/292 (61%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS------SYGFVDYFDRRSAALA 101
R++YVG + P+VT +L+++F +TG + K+I DK+ +YGFV++ D +A A
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIP-DKNFNSKGANYGFVEFDDPGAAERA 148
Query: 102 IVTLNGRHIFGQPIKVNWAYASS--QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
+ TLNGR I I+VNWAY S+ +EDTS HF++FVGDLS EV D L FS F +
Sbjct: 149 MQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSV 208
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA-AKGATSGDE 218
S+ARVMWD KTGRSRG+GFV+FR + DA+ A+ ++G+WLG+R IRCNWA KG S +
Sbjct: 209 SEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSISQ 268
Query: 219 KQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY-TTVYVGNLSSEVTSVDLHRH 277
+Q+ + + T F G + S + + P + TT YVGNL+ T D+
Sbjct: 269 QQAMAAMGMTPTTPFGHHHFPTHGIQ-SYDMVVQQTPAWQTTCYVGNLTPYTTQNDIVPL 327
Query: 278 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G + + R+Q D+GF F++ TH AA AI N + G+P+KCSW
Sbjct: 328 FQNF--GYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVNGRPLKCSW 377
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 452 (164.2 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 86/183 (46%), Positives = 126/183 (68%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q +++
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNT 188
Query: 225 KSV 227
K +
Sbjct: 189 KQL 191
Score = 133 (51.9 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 256
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 257 IVSVNGTTIEGHVVKCYW 274
Score = 123 (48.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 136 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 194
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 195 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 248
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 249 THESAAHAIVSVNGTTIEGHVVKCYW 274
Score = 122 (48.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWA 173
Score = 110 (43.8 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
ED ++VG+LS +VT+ + FS C +++ + + + FV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
A +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 95
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 452 (164.2 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 86/183 (46%), Positives = 126/183 (68%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q +++
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNT 188
Query: 225 KSV 227
K +
Sbjct: 189 KQL 191
Score = 133 (51.9 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 256
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 257 IVSVNGTTIEGHVVKCYW 274
Score = 123 (48.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 136 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 194
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 195 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 248
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 249 THESAAHAIVSVNGTTIEGHVVKCYW 274
Score = 122 (48.0 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWA 173
Score = 110 (43.8 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
ED ++VG+LS +VT+ + FS C +++ + + + FV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
A +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 95
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 376 (137.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 72/142 (50%), Positives = 99/142 (69%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++F+ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 127
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ A F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 128 TDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 187
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q + +K +
Sbjct: 188 TNWATRKPPAPKSVQDNSAKQL 209
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRY 302
Q + +E +++PQ TVY G + S +T + + F G I ++RV +KG+ F+R+
Sbjct: 208 QLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPF--GQIMEIRVFPEKGYSFIRF 265
Query: 303 STHPEAALAIQMGNARILCGKPIKCSW 329
S+H AA AI N + G +KC W
Sbjct: 266 SSHESAAHAIVSVNGTTIEGHVVKCYW 292
Score = 121 (47.7 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 33/112 (29%), Positives = 57/112 (50%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 110 DTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDA 169
Query: 99 ALAIVTLNGRHIFGQPIKVNWAY----ASSQREDTSG---HFNVFVGDLSPE 143
AIV + G+ + G+ I+ NWA A +D S F+ V SP+
Sbjct: 170 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQ 221
Score = 118 (46.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 40/146 (27%), Positives = 65/146 (44%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY----ASSQREDTSG---HFN 134
K K YGFV ++++ A AIV + G+ + G+ I+ NWA A +D S F+
Sbjct: 154 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFD 212
Query: 135 VFVGDLSPE------------VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
V SP+ +T+ + FS F + RV + +G+ F+ F
Sbjct: 213 EVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPE------KGYSFIRFS 266
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 267 SHESAAHAIVSVNGTTIEGHVVKCYW 292
Score = 99 (39.9 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 78 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRA 133
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 134 AFAPF--GKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 190
Score = 87 (35.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
D S +++YVGN+ VT L+ ++F+ GP + CK+I + S
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDS 46
Score = 59 (25.8 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK-TGRSRGFGFVSF 181
ED S ++VG+LS +VT+ + F+ C +++ +Q + R + F
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGF 57
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQENNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 123 (48.4 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 101 (40.6 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 125
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 126 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 185
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 186 TNWATRKPPAPKSTQENNTKQL 207
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 215 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 272
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 273 IVSVNGTTIEGHVVKCYW 290
Score = 123 (48.4 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 152 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 210
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 211 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 264
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 265 THESAAHAIVSVNGTTIEGHVVKCYW 290
Score = 122 (48.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 108 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 167
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 168 ENAIVHMGGQWLGGRQIRTNWA 189
Score = 101 (40.6 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 2 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 62 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 111
Score = 99 (39.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 76 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 131
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 132 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 188
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 46
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQENNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 123 (48.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 101 (40.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQENNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 123 (48.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 101 (40.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQETNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 122 (48.0 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 101 (40.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQETNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 122 (48.0 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 101 (40.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQETNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 122 (48.0 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 101 (40.6 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 373 (136.4 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 70/142 (49%), Positives = 100/142 (70%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 206 CNWAAKGATSGDEKQSSDSKSV 227
NWA + + Q +++K +
Sbjct: 187 TNWATRKPPAPKSTQETNTKQL 208
Score = 133 (51.9 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Score = 122 (48.0 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AIV + G+ + G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 122 (48.0 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDT------ 129
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 130 -----SGHFN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S N V+ G ++ +TD + FS F + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
E A AI +NG + ++C W
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYW 291
Score = 101 (40.6 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 112
Score = 99 (39.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 223 DSKSVVELTNGISVLFAEDGQE-KSN-EDAPENNPQYTT----VYVGNLSSEVTSVDLHR 276
D+ + + NG +L G+E K N P + + T+ V+VG+LS E+T+ D+
Sbjct: 77 DAAAALAAMNGRKIL----GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132
Query: 277 HFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I D RV +D KG+GFV + +A AI + L G+ I+ +W
Sbjct: 133 AFAPF--GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
Score = 90 (36.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS 86
R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDS 47
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 448 (162.8 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 86/183 (46%), Positives = 124/183 (67%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++++ R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S++
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186
Query: 225 KSV 227
K +
Sbjct: 187 KQL 189
Score = 129 (50.5 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 238 FAEDGQEKSNEDAP-ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG 296
+ + ++ S +D +++P TVY G ++S +T + + F G I ++RV DKG
Sbjct: 182 YESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKG 239
Query: 297 FGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
+ FVR+++H AA AI N + G +KC W
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 134 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 192
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 193 DVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFN 246
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 247 SHESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 117 (46.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV +F++ A
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AI + G+ + G+ I+ NWA
Sbjct: 150 ENAIQQMGGQWLGGRQIRTNWA 171
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 445 (161.7 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 86/183 (46%), Positives = 123/183 (67%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S++
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186
Query: 225 KSV 227
K +
Sbjct: 187 KQL 189
Score = 130 (50.8 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ F+R+S+H
Sbjct: 192 DEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFIRFSSHE 249
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKCYW 272
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 39/146 (26%), Positives = 67/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 134 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 192
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ G+ V+ G ++ +T+ + FS F + RV D +G+ F+ F
Sbjct: 193 EVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFS 246
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 247 SHESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 117 (46.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV +F++ A
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AI + G+ + G+ I+ NWA
Sbjct: 150 ENAIQQMGGQWLGGRQIRTNWA 171
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 442 (160.7 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 83/167 (49%), Positives = 118/167 (70%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++F GP + CK+I + Y FV++F+ R AA ++ +
Sbjct: 8 KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAASLAAM 67
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA + SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV
Sbjct: 68 NGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARV 127
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 128 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 174
Score = 127 (49.8 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G +++ +T + + F G I +VRV DKG+ FVR+++H
Sbjct: 193 DEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPF--GQIMEVRVFPDKGYSFVRFNSHE 250
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N L G +KC W
Sbjct: 251 SAAHAIVSVNGTSLEGHIVKCYW 273
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQR----- 126
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y ++ +
Sbjct: 135 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFD 193
Query: 127 ----EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 194 EVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFN 247
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG L ++C W
Sbjct: 248 SHESAAHAIVSVNGTSLEGHIVKCYW 273
Score = 116 (45.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV +F++ A
Sbjct: 91 DTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 150
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AI + G+ + G+ I+ NWA
Sbjct: 151 ENAIQQMGGQWLGGRQIRTNWA 172
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 420 (152.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 86/194 (44%), Positives = 124/194 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++++ R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSV 227
+ S++K +
Sbjct: 187 PAPKSTYESNTKQL 200
Score = 129 (50.5 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR+++H
Sbjct: 203 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHE 260
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYW 283
Score = 123 (48.4 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 123 (48.4 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 145 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 204 EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFN 257
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 258 SHESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 104 (41.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 166 QMGGQWLGGRQIRTNW 181
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 420 (152.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 86/194 (44%), Positives = 124/194 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++++ R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSV 227
+ S++K +
Sbjct: 187 PAPKSTYESNTKQL 200
Score = 129 (50.5 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR+++H
Sbjct: 203 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHE 260
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYW 283
Score = 123 (48.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 123 (48.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 145 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 204 EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFN 257
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 258 SHESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 104 (41.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 166 QMGGQWLGGRQIRTNW 181
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 416 (151.5 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 86/194 (44%), Positives = 123/194 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSV 227
+ S++K +
Sbjct: 187 PAPKSTYESNTKQL 200
Score = 133 (51.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR+S+H
Sbjct: 203 DEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFSSHE 260
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYW 283
Score = 125 (49.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 145 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 204 EVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFS 257
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 258 SHESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 104 (41.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 166 QMGGQWLGGRQIRTNW 181
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 416 (151.5 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 86/194 (44%), Positives = 123/194 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 122
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 123 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 182
Query: 214 TSGDEKQSSDSKSV 227
+ S++K +
Sbjct: 183 PAPKSTYESNTKQL 196
Score = 130 (50.8 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ F+R+S+H
Sbjct: 199 DEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFIRFSSHE 256
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 257 SAAHAIVSVNGTTIEGHVVKCYW 279
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 39/146 (26%), Positives = 67/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 141 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 199
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ G+ V+ G ++ +T+ + FS F + RV D +G+ F+ F
Sbjct: 200 EVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFS 253
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 254 SHESAAHAIVSVNGTTIEGHVVKCYW 279
Score = 125 (49.1 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 63 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 93
Score = 104 (41.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 161
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 162 QMGGQWLGGRQIRTNW 177
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 416 (151.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 86/194 (44%), Positives = 123/194 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSV 227
+ S++K +
Sbjct: 187 PAPKSTYESNTKQL 200
Score = 129 (50.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR+++H
Sbjct: 203 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHE 260
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYW 283
Score = 125 (49.1 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 123 (48.4 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 145 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 204 EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFN 257
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 258 SHESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 104 (41.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 166 QMGGQWLGGRQIRTNW 181
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 416 (151.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 86/194 (44%), Positives = 123/194 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSV 227
+ S++K +
Sbjct: 187 PAPKSTYESNTKQL 200
Score = 129 (50.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 306
+E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR+++H
Sbjct: 203 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHE 260
Query: 307 EAALAIQMGNARILCGKPIKCSW 329
AA AI N + G +KC W
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYW 283
Score = 125 (49.1 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 123 (48.4 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 39/146 (26%), Positives = 66/146 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---- 127
K K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++
Sbjct: 145 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203
Query: 128 -----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
+ + V+ G ++ +T+ + FS F + RV D +G+ FV F
Sbjct: 204 EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFN 257
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNW 208
+ E A AI +NG + ++C W
Sbjct: 258 SHESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 104 (41.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 166 QMGGQWLGGRQIRTNW 181
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 445 (161.7 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 86/183 (46%), Positives = 123/183 (67%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S++
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186
Query: 225 KSV 227
K +
Sbjct: 187 KQL 189
Score = 117 (46.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV +F++ A
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AI + G+ + G+ I+ NWA
Sbjct: 150 ENAIQQMGGQWLGGRQIRTNWA 171
Score = 79 (32.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVR 301
+E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR
Sbjct: 192 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVR 244
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 445 (161.7 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 86/183 (46%), Positives = 123/183 (67%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 122
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S++
Sbjct: 123 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 182
Query: 225 KSV 227
K +
Sbjct: 183 KQL 185
Score = 117 (46.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV +F++ A
Sbjct: 86 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 145
Query: 99 ALAIVTLNGRHIFGQPIKVNWA 120
AI + G+ + G+ I+ NWA
Sbjct: 146 ENAIQQMGGQWLGGRQIRTNWA 167
Score = 77 (32.2 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVR 301
+E +++P TVY G ++S +T + + F G I ++RV DKG+ F+R
Sbjct: 188 DEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFIR 240
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 117/360 (32%), Positives = 181/360 (50%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-YGFVDYFDRRSAALA 101
D S +++YVGN+ V+ LL +FS+ GP++ CK+I++ + Y F++Y + ++A A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTA 61
Query: 102 IVTLNGRHIFGQPIKVNWAYA--SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
+ +N R + IKVNWA + + + D S H ++FVGDLSPE+ TL F+ F
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
S+ R++ D T +S+G+ FVSF + +A++AI +NG+W+G+R IR NW+ + E
Sbjct: 122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREP 181
Query: 220 QSSDSKSVVE---LTNGISVLFAEDGQEKSNEDA-PENNPQYTTVYVGNLSSEVTSVDL- 274
+ NG V + Q + E+ +++P TTVY G V S DL
Sbjct: 182 SKGGGQGGGMGGGPGNGSGV---KGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLM 238
Query: 275 HRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWXXXXX 334
H+HF + G I+DVRV +DKGF F+++ T AA AI+ + + G +KC W
Sbjct: 239 HKHF--VQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENG 296
Query: 335 XXXXXXXXXXXXXXXXXXXFSATDLAAYERQIALSKIAGAQALMHPQAQHALKLGMGAAG 394
SA A A++ AG M Q Q A G G
Sbjct: 297 GDNSANNLNAAAAAAAA---SANVAAVAAANAAVAAGAGMPGQMMTQQQIAAATGAAIPG 353
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 36 GNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSS-YGFVD 91
GN P+ D S+ ++VG++ P++ L+E F+ G + C++++ KS Y FV
Sbjct: 84 GN-QPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVS 142
Query: 92 YFDRRSAALAIVTLNGRHIFGQPIKVNWA 120
+ + A AI +NG+ I + I+ NW+
Sbjct: 143 FVKKAEAENAIQAMNGQWIGSRSIRTNWS 171
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 362 (132.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 76/170 (44%), Positives = 106/170 (62%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIK-KDKS--SYGFVDYFDRRSAALAIVTL 105
+YVGN+ + +QE+FS G P++ K++ K+K+ +Y F++Y A +A+ TL
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCS 160
NGR + IKVNWA+ S+ + FN+FVGDLSPEV D L FS F +
Sbjct: 141 NGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLK 200
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
A VMWD +T RSRG+GFV+F NQ DA+ A+ +NG+WL R IRCNWA+
Sbjct: 201 QAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWAS 250
Score = 126 (49.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 36/121 (29%), Positives = 58/121 (47%)
Query: 223 DSKSVVELT-NGISVLFAEDGQEKSN----EDAPENNPQYT-----TVYVGNLSSEVTSV 272
D+ V ++ N ++ +D + K N A NP T ++VG+LS EV
Sbjct: 128 DTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDE 187
Query: 273 DLHR---HFHALCVGTIE-DVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L F +L + D++ R +G+GFV + +A LA+Q N LCG+ I+C+
Sbjct: 188 GLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCN 247
Query: 329 W 329
W
Sbjct: 248 W 248
Score = 120 (47.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 30/105 (28%), Positives = 57/105 (54%)
Query: 34 LSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGF 89
++GN P +++VG++ P+V + L+ FS L+ ++ ++S YGF
Sbjct: 161 IAGN--PNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGF 218
Query: 90 VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFN 134
V + ++ A LA+ T+NG + G+ I+ NWA S +++ H+N
Sbjct: 219 VTFGNQSDAELALQTMNGEWLCGRAIRCNWA--SHKQQQQQQHYN 261
Score = 114 (45.2 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAI-QMGN 316
TTVY+GN++ +L G I D + ++G FV+Y TH AALAI Q+
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNF--GFIVDFKFHPERGCAFVKYDTHERAALAIIQLAG 469
Query: 317 ARILCGKPIKCSW 329
L G+P+KC W
Sbjct: 470 FN-LNGRPLKCGW 481
Score = 99 (39.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 27/109 (24%), Positives = 51/109 (46%)
Query: 116 KVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRG 175
+VN A A + S ++VG+L ++ T+ FSV + + K
Sbjct: 63 QVNAASAKEGGREVSNKI-LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFN 121
Query: 176 FGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT-SGDEKQSSD 223
+ F+ + E A A+N LNG+ + + +I+ NWA + A +G+ + +
Sbjct: 122 YAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEE 170
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 100/239 (41%), Positives = 148/239 (61%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAAL 100
D R++YVGN+ VT AL+ +VFS GP + CK+I + Y FV++++ R AA
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAA 63
Query: 101 AIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE++ + A F+ F
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
SDARV+ D TG+S+G+GF+SF N+ DA+SAI +NG+WLG RQIR NWA + ++ K
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSA--PK 181
Query: 220 QSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 278
+++ S L+ +E N+ +P N TVY G ++S ++ + + F
Sbjct: 182 SNNEGASSKHLSY----------EEVLNQSSPSN----CTVYCGGIASGLSDQLMRQTF 226
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRY 302
+E N+ +P N TVY G ++S ++ + + F G I ++RV +KG+ FVR+
Sbjct: 195 EEVLNQSSPSN----CTVYCGGIASGLSDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRF 248
Query: 303 STHPEAALAIQMGNARILCGKPIKCSW 329
+H AA AI N + G +KC W
Sbjct: 249 DSHEGAAHAIVSVNGTCIEGHTVKCYW 275
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 39/152 (25%), Positives = 68/152 (44%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA--SSQREDTSG----HFN- 134
K K YGF+ + ++ A AI +NG+ + G+ I+ NWA S+ + + G H +
Sbjct: 136 KSKG-YGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSY 194
Query: 135 -------------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
V+ G ++ ++D + FS F + RV + +G+ FV F
Sbjct: 195 EEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRF 248
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ E A AI +NG + ++C W + A
Sbjct: 249 DSHEGAAHAIVSVNGTCIEGHTVKCYWGKETA 280
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 350 (128.3 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 77/194 (39%), Positives = 116/194 (59%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-YGFVDYFDRRSAALAIVTLN 106
R++YVGN+ VT + +F+ G + K+I + Y FV++ D A+ A+ T+N
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMN 105
Query: 107 GRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
R + + +KVNWA Q++ DT+ HF+VFVGDLS EV + L F F SDA+
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS- 222
V+ D T +S+G+GFVS+ +E+A+ AI +NG+WLG R IR NWA + GD+++ S
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR--KPGDQEKPSH 223
Query: 223 -DSKSVVELTNGIS 235
+ KS E+ N S
Sbjct: 224 YNEKSYDEIYNQTS 237
Score = 187 (70.9 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 54/206 (26%), Positives = 97/206 (47%)
Query: 30 IEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--- 86
+EP G + D + V+VG++ +V N L+E F G + K+I+ ++
Sbjct: 120 VEP---GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 176
Query: 87 -YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFN----------- 134
YGFV Y R A AI +NG+ + + I+ NWA ++ H+N
Sbjct: 177 GYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQT 236
Query: 135 ------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQ 188
V+VG+++ +T+ + F+ F ++ R+ + +G+ FV F N++ A
Sbjct: 237 SGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAA 289
Query: 189 SAINDLNGKWLGNRQIRCNWAAKGAT 214
AI +N + +G + +RC+W G T
Sbjct: 290 KAIVQMNNQDVGGQLVRCSWGKTGDT 315
Score = 116 (45.9 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 244 EKSNEDA-PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRY 302
EKS ++ + + T+VYVGN++S +T ++ + F + G I +VR+ + +G+ FV++
Sbjct: 226 EKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASF--GRITEVRIFKMQGYAFVKF 282
Query: 303 STHPEAALAIQMGNARILCGKPIKCSW 329
AA AI N + + G+ ++CSW
Sbjct: 283 DNKDAAAKAIVQMNNQDVGGQLVRCSW 309
Score = 116 (45.9 bits), Expect = 0.00061, P = 0.00061
Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 240 EDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----- 294
E GQ++S D ++ V+VG+LSSEV + L F G + D +V RD
Sbjct: 121 EPGQQQSKIDTT----RHFHVFVGDLSSEVDNQKLREAFQPF--GDVSDAKVIRDTNTTK 174
Query: 295 -KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
KG+GFV Y EA AI+ N + L + I+ +W
Sbjct: 175 SKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 210
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 365 (133.5 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 72/167 (43%), Positives = 106/167 (63%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALAIVT 104
R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A+ T
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
LNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+ V
Sbjct: 135 LNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 193
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
MWD +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWAAK
Sbjct: 194 MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 115 (45.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 28/99 (28%), Positives = 49/99 (49%)
Query: 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFV 179
A A + +TS ++VG+L +T+ L F V ++ ++M D K ++ + FV
Sbjct: 63 ANAITGGRETSDRV-LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFV 120
Query: 180 SFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
+ DA A+ LNGK + N ++ NWA + S +
Sbjct: 121 EYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSD 159
Score = 98 (39.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAI-Q 313
P+ TT Y+GN+ T DL F G I D + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 395
Query: 314 MGNARILCGKPIKCSW 329
+ N G+ ++ W
Sbjct: 396 LANFPFQ-GRNLRTGW 410
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 84/178 (47%), Positives = 117/178 (65%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Score = 125 (49.1 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 104 (41.7 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 314 MGNARILCGKPIKCSW 329
+ L G+ I+ +W
Sbjct: 166 QMGGQWLGGRQIRTNW 181
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 95/290 (32%), Positives = 157/290 (54%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-YGFVDYFDRRSAALAIVTLN 106
R+++V N+ P +T+ L +F+ G + K+I + + Y FV++ D A LA+ + N
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHN 99
Query: 107 GRHIFGQPIKVNWAYASSQ------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS 160
GR + + + V WA+ + + +TS HF+VFVGDL E+ L F F S
Sbjct: 100 GRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVS 159
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
+A+++ D T + +G+GFVS+ +EDA+ AI+++NG WLG R IR NWA + D ++
Sbjct: 160 EAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDE-DGER 218
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
D G + ++ +E + T+VYVGN+++ + ++ R F
Sbjct: 219 GGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNIAN-LGEDEIRRAFDR 277
Query: 281 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAI-QMGNARILCGKPIKCSW 329
G I +VR + +G+ FV++ T AA AI QM NA I G+ ++CSW
Sbjct: 278 F--GPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADI-GGQIVRCSW 324
Score = 106 (42.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/105 (28%), Positives = 52/105 (49%)
Query: 31 EPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---- 86
EP G + + S V+VG++ ++ + L+E F G + K+I+ + ++
Sbjct: 115 EPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKG 174
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG 131
YGFV Y R A AI +NG + + I+ NWA +++ D G
Sbjct: 175 YGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA---TRKPDEDG 216
Score = 89 (36.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+V+VG+++ + + + F F ++ R T + +G+ FV F +E A AI
Sbjct: 257 SVYVGNIA-NLGEDEIRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARAIVQ 309
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+N +G + +RC+W G + ++ S
Sbjct: 310 MNNADIGGQIVRCSWGKSGDSGKPSERGS 338
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 352 (129.0 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 87/290 (30%), Positives = 150/290 (51%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIV 103
R++++G++ V L FS TG L K+I+ YGF+++ +A +
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 104 TLNGRHIFGQPI--KVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV-FPTC 159
T NG + G + ++NWA + S Q+ D ++FVGDL+P+VTD L F V + +
Sbjct: 84 TYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
A+V+ D TGRS+G+GFV F + + A+ ++NG + R +R + A G ++
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203
Query: 220 QSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279
Q +K+V +T V A ++ PE++ TT+ V NL VT +L + F
Sbjct: 204 QYV-TKAVYPVT----VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFS 258
Query: 280 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
L G + V++ KG+G+V++ T P A A+Q +++ + ++ SW
Sbjct: 259 QL--GEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISW 306
Score = 115 (45.5 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 22 PSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK 81
PS +AAP ++ ++ PP D TC ++ V N+ VT L++ FS G + K I
Sbjct: 216 PSAVAAP-VQAYVA---PPESDV-TCTTISVANLDQNVTEEELKKAFSQLGEVIYVK-IP 269
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120
K YG+V + R SA A+ + G+ I Q ++++W+
Sbjct: 270 ATKG-YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 307
Score = 100 (40.3 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKDKSS----YGFVDYFDR 95
+ DA S++VG++ P VT+ LLQE F + G K++ + YGFV + +
Sbjct: 109 KVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEE 168
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWA 120
A+ +NG + +P++++ A
Sbjct: 169 SERNRAMAEMNGLYCSTRPMRISAA 193
Score = 89 (36.4 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFV 179
AY + D + + V +L VT+ L FS V++ K ++G+G+V
Sbjct: 225 AYVAPPESDVTCT-TISVANLDQNVTEEELKKAFSQL-----GEVIY-VKIPATKGYGYV 277
Query: 180 SFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
F+ + A+ A+ + G+ +G + +R +W+ G
Sbjct: 278 QFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDG 314
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 391 GAAGASQAIYD 401
G AGA Q +YD
Sbjct: 375 GVAGAEQELYD 385
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 278 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG 322
+ A G +D V G+G+ +Y E I A + G
Sbjct: 334 YDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAGGVAG 378
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 90/293 (30%), Positives = 155/293 (52%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++++G++ + + L FS G + K+I+ ++ YGFV++ +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 104 TLNGRHIFG--QPIKVNWAYASS--QREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+ NG + QP ++NWA S+ +R +T F++FVGDL+ +VTD L F S +P+
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TG S+G+GFV F ++ + A+ ++NG + +R +R A S E
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 219 KQSSDSKSVVELTNGISVLFAEDGQEK--SNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276
+ SS + V L+ G +A +G S D +N TT++VG L SEVT +L +
Sbjct: 264 QYSSQA---VILSGG----YASNGAATHGSQSDGDSSN---TTIFVGGLDSEVTDEELRQ 313
Query: 277 HFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F+ G + V++ KG GFV++S A AIQ + I+ + ++ SW
Sbjct: 314 SFNQF--GEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW 364
Score = 124 (48.7 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 33/103 (32%), Positives = 52/103 (50%)
Query: 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN 183
SQ + S + +FVG L EVTD L F+ F ++ G+ G GFV F +
Sbjct: 286 SQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI----PAGK--GCGFVQFSD 339
Query: 184 QEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKS 226
+ AQ AI L+G +G + +R +W G + +++ +DS S
Sbjct: 340 RSSAQEAIQKLSGAIIGKQAVRLSW---GRSPANKQMRTDSGS 379
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 66/122 (54%), Positives = 90/122 (73%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 71 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
Query: 206 CN 207
N
Sbjct: 131 TN 132
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-YGFVDYFDRRSA 98
D S V+VG++ P++T ++ F+ G + +++K KS YGFV ++++ A
Sbjct: 53 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 112
Query: 99 ALAIVTLNGRHIFGQPIKVN 118
AIV + G+ + G+ I+ N
Sbjct: 113 ENAIVHMGGQWLGGRQIRTN 132
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 69/137 (50%), Positives = 94/137 (68%)
Query: 51 YVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGR 108
YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61
Query: 109 HIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ D
Sbjct: 62 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 121
Query: 168 QKTGRSRGFGFVSFRNQ 184
TG+S+G+GFVSF N+
Sbjct: 122 MATGKSKGYGFVSFFNK 138
Score = 115 (45.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 136 FVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195
+VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 196 GKWLGNRQIRCNWAAKGATSGDEKQSSD 223
G+ + ++++ NWA S +K +S+
Sbjct: 60 GRKIMGKEVKVNWAT--TPSSQKKDTSN 85
Score = 76 (31.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRY 302
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV +
Sbjct: 89 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSF 135
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 90/294 (30%), Positives = 151/294 (51%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
++++VG++ + L FS TG + K+I+ +S YGFV++ R +A +
Sbjct: 108 KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 104 TLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACFSV-FP 157
+G + QP ++NWA S+ +R +G +VFVGDLSP+VTD L FS +P
Sbjct: 168 NYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYP 227
Query: 158 TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGD 217
+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + NRQ+R A +
Sbjct: 228 SVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIAN 287
Query: 218 EKQSSDSKSVVELTNGISVLFAEDGQEK--SNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
++Q S S++V+ L G +G S D N T++VG + +V DL
Sbjct: 288 QQQHS-SQAVI-LAGG----HGSNGSMGYGSQSDGESTN---ATIFVGGIDPDVIDEDLR 338
Query: 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
+ F G + V++ KG GFV+++ A AI+ N ++ ++ SW
Sbjct: 339 QPFSQF--GEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSW 390
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 87/293 (29%), Positives = 153/293 (52%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIV 103
++++VG++ + L FS T + K+I+ ++ YGFV++ R +A A+
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 104 TLNGRHIFG--QPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACFSV-FP 157
+ +G + QP ++NWA S+ +R +G ++FVGDL+P+V+DA L F+ +P
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 158 TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA-KGATSG 216
+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + +RQ+R A K A +
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAY 298
Query: 217 DEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276
++ S + + L G G S D NN +T++VG L ++VT DL +
Sbjct: 299 GQQNGSQA---LTLAGG-------HGGNGSMSDGESNN---STIFVGGLDADVTEEDLMQ 345
Query: 277 HFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G + V++ KG GFV+++ A AI N ++ ++ SW
Sbjct: 346 PFSDF--GEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSW 396
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 86/296 (29%), Positives = 142/296 (47%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK-----KDKSSYGFVDYFDRRSAALAIV 103
++++G + P + ++ ++ G K+I+ + + Y FVD+ +AA A+
Sbjct: 66 TLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL- 124
Query: 104 TLNGRHI--FGQPIKVNWA----YASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVF 156
+LNG + + K+NWA A R+D +++FVGDL PEV + L + F S F
Sbjct: 125 SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRF 184
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA---KGA 213
P+C A++M D +G SRG+GFV F ++ D Q A++++ G + GNR +R + A KG
Sbjct: 185 PSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKGP 244
Query: 214 TSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273
+ + G + + N+ NN TTV+VG LS VT +
Sbjct: 245 GVVPGGMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNN---TTVFVGGLSGYVTEDE 301
Query: 274 LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
L F G I V++ KG GFV++ A +AI + ++ SW
Sbjct: 302 LRSFFQGF--GEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSW 355
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 242 (90.2 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 56/177 (31%), Positives = 96/177 (54%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAA 99
AS +S+++G++ + + VF+ +G K+I+ YGF+++ A
Sbjct: 56 ASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAE 115
Query: 100 LAIVTLNGRHIFG--QPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACF- 153
+ T NG + Q ++NWA A + +R T G +FVGDL+PEVTD L F
Sbjct: 116 RVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFK 175
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
+V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ R +R AA
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 50/194 (25%), Positives = 94/194 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAI 102
+++VG++ P+VT+ +L + F + G ++G K++ D+++ YGFV + D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVL-DRTTGRSKGYGFVRFADENEQMRAM 213
Query: 103 VTLNGRHIFGQPIKVNWA------------YASSQR----EDTSGHFNVFVGDLSPEVTD 146
+NG++ +P+++ A Y ++Q ++ + +FVG L VTD
Sbjct: 214 TEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L + F F ++ G+ GFV + N+ A+ A++ LNG LG + IR
Sbjct: 274 DELKSIFGQFGELLHVKI----PPGKR--CGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 207 NWAAKGATSGDEKQ 220
+W D+ Q
Sbjct: 328 SWGRSPNKQSDQAQ 341
Score = 114 (45.2 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRY 302
Q +A +N+P TT++VG L + VT +L F G + V++ K GFV+Y
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQF--GELLHVKIPPGKRCGFVQY 302
Query: 303 STHPEAALAIQMGNARILCGKPIKCSW 329
+ A A+ + N L G+ I+ SW
Sbjct: 303 ANKASAEHALSVLNGTQLGGQSIRLSW 329
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 250 (93.1 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 60/192 (31%), Positives = 102/192 (53%)
Query: 28 PQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY 87
PQ + G A RS+++G++ P + L VF TG K+I+ ++ Y
Sbjct: 60 PQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGY 119
Query: 88 ----GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY-ASSQREDTSG-HFNVFVGD 139
GF+++ + +A + T NG + Q ++NWA + +R G VFVGD
Sbjct: 120 SEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGD 179
Query: 140 LSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198
L+P+VTD L F +V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++
Sbjct: 180 LAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQY 239
Query: 199 LGNRQIRCNWAA 210
+R +R AA
Sbjct: 240 CSSRPMRTGPAA 251
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAI 102
+V+VG++ P VT+ +L E F + ++G K++ D+++ YGFV + D A+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVN-DRTTGRSKGYGFVRFADESEQIRAM 232
Query: 103 VTLNGRHIFGQPIKVNWAY---------ASSQR-EDTSGHFN-----VFVGDLSPEVTDA 147
+NG++ +P++ A AS Q + SG + +FVG + VT+
Sbjct: 233 TEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTED 292
Query: 148 TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207
L + F F ++ G+ GFV + N+ A+ A++ LNG LG + IR +
Sbjct: 293 DLKSVFGQFGELVHVKI----PAGKR--CGFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
Query: 208 W 208
W
Sbjct: 347 W 347
Score = 104 (41.7 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 244 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS 303
+ + ++ E++P TT++VG + VT DL F G + V++ K GFV+Y+
Sbjct: 264 QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQF--GELVHVKIPAGKRCGFVQYA 321
Query: 304 THPEAALAIQMGNARILCGKPIKCSW 329
A A+ + N L G+ I+ SW
Sbjct: 322 NRACAEQALSVLNGTQLGGQSIRLSW 347
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 232 (86.7 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 59/185 (31%), Positives = 101/185 (54%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++H + A L F+S E K+I+ + YGFV++ A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACFSV- 155
+ NG + QP ++NWA S+ +R + +G ++FVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 216 GDEKQ 220
G ++Q
Sbjct: 281 GYQQQ 285
Score = 143 (55.4 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 49/187 (26%), Positives = 82/187 (43%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLI---KKDKSS-YGFVDYFDRRSAALAIV 103
S++VG++ P V++ LL E FS P ++ K++ +S YGFV + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 104 TLNGRHIFGQPIKVNWAYASSQR--EDTSGHF---------------NVFVGDLSPEVTD 146
+NG + +++ A + G+ +FVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L F+ F ++ G+ G GFV F N+ +A+ A+ LNG +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKI----PVGK--GCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 207 NWAAKGA 213
+W A
Sbjct: 372 SWGRNPA 378
Score = 124 (48.7 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 251 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAAL 310
PE + TT++VG L S VT DL + F+ G I V++ KG GFV++ P A
Sbjct: 297 PEGDIMNTTIFVGGLDSSVTDEDLKQPFNEF--GEIVSVKIPVGKGCGFVQFVNRPNAEE 354
Query: 311 AIQMGNARILCGKPIKCSW 329
A++ N ++ + ++ SW
Sbjct: 355 ALEKLNGTVIGKQTVRLSW 373
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELT 231
+SRG + N E+ + DL+ W+ + ++A SGDE++ K +
Sbjct: 86 QSRGNKHQNAFNGENKTIWVGDLH-HWMDEAYLNSSFA-----SGDEREIVSVKVIRNKN 139
Query: 232 NGIS 235
NG+S
Sbjct: 140 NGLS 143
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 72/212 (33%), Positives = 116/212 (54%)
Query: 29 QIEPILSGNLPPRFDASTCR--SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-- 84
+I P + NL + A + +VYVG + Q++ LL E+F GP+ + KD+
Sbjct: 4 RIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNV-YVPKDRVT 62
Query: 85 ---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLS 141
+YGF++Y A AI LN + G+PI+VN A + D N+F+G+L
Sbjct: 63 NLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGA--NLFIGNLD 120
Query: 142 PEVTDATLFACFSVFPT-CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200
P+V + L+ FS F S+ ++M D TG SRGFGF+S+ + E + +AI + G++L
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180
Query: 201 NRQIRCNWAAKGATSGDEKQSSDSKSVVELTN 232
NRQI ++A K T G E+ + ++ ++ TN
Sbjct: 181 NRQITVSYAYKKDTKG-ERHGTPAERLLAATN 211
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 247 (92.0 bits), Expect = 8.6e-26, Sum P(2) = 8.6e-26
Identities = 58/174 (33%), Positives = 98/174 (56%)
Query: 46 TCRSVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKDKSS---YGFVDYFDRRSAALA 101
+ +++++G + P + +++++S+ G K+I+ +S Y FV+ F AA
Sbjct: 45 SAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNAGYCFVE-FPSSEAATK 103
Query: 102 IVTLNGRHI-FGQPI-KVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACFSV- 155
+ LNG + Q + K+NWA R D G +++FVGDL PEV + L + F
Sbjct: 104 ALGLNGSPVPNSQRVFKLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQAR 163
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
FP+C A++M D TG+SRG+GFV F ++ D Q A+ ++ G + GNR +R + A
Sbjct: 164 FPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTA 217
Score = 102 (41.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
VFVG LS VT+ L + F F D + K +G GFV F ++ A+ AIN +
Sbjct: 286 VFVGGLSGYVTEDELRSFFQGF---GDITYV---KIPPGKGCGFVQFVHRHAAEMAINQM 339
Query: 195 NGKWLGNRQIRCNWAAKGATSG 216
G +GN ++R +W SG
Sbjct: 340 QGYPIGNSRVRLSWGRSQNNSG 361
Score = 97 (39.2 bits), Expect = 8.6e-26, Sum P(2) = 8.6e-26
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQ 313
+P TTV+VG LS VT +L F G I V++ KG GFV++ A +AI
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGF--GDITYVKIPPGKGCGFVQFVHRHAAEMAIN 337
Query: 314 MGNARILCGKPIKCSW 329
+ ++ SW
Sbjct: 338 QMQGYPIGNSRVRLSW 353
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-----YGFVDYFDRRSAALA 101
S++VG++ P+V +L +F + P CK K D + YGFV + D A
Sbjct: 141 SIFVGDLGPEVNEFVLVSLFQARFP--SCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRA 198
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGH 132
+V + G + +P++++ A ++ G+
Sbjct: 199 LVEMQGVYCGNRPMRISTATPKTRSHQQYGN 229
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 294 (108.6 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 87/292 (29%), Positives = 146/292 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVT 104
++++G + P VT A +Q+V+++ G KLI+ + Y FV++ A+ A+ +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 105 LNGRHIFGQP--IKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+N + I G K+NWA RE + + +++FVGDLSP V + +++ F S + +
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
C A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G+R IR A
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP------- 265
Query: 219 KQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPE-NNPQYTTVYVGNLSSEVTSVDLHRH 277
K + S V N + V G + + P+ + +TV+VG LS V+ +L
Sbjct: 266 KSKAHVFSPV---NVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYL 322
Query: 278 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I V++ KG GFV++ A +AI L I+ SW
Sbjct: 323 FQNF--GEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSW 372
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 233 (87.1 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 61/185 (32%), Positives = 103/185 (55%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLI--KKDKSS--YGFVDYFDRRSAALA 101
++++VG++ + A L F+S E K+I K + SS YGFV++ A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACFSV- 155
+ NG + QP ++NWA S+ +R + +G ++FVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 216 GDEKQ 220
G ++Q
Sbjct: 283 GYQQQ 287
Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 57/187 (30%), Positives = 88/187 (47%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLI---KKDKSS-YGFVDYFDRRSAALAIV 103
S++VG++ P V++ALL E FS P ++ K++ +S YGFV + D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 104 TLNG-----RHI-FGQ--PIKVNW-----AY----ASSQREDTSGHFNVFVGDLSPEVTD 146
+NG R + G P K N Y A ++ E + + +FVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L FS F ++ G+ G GFV F N+ +A+ A+ LNG +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKI----PVGK--GCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 207 NWAAKGA 213
+W A
Sbjct: 374 SWGRNPA 380
Score = 114 (45.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA 317
TT++VG L S VT DL + F G I V++ KG GFV++ P A A++ N
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEF--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 318 RILCGKPIKCSW 329
++ + ++ SW
Sbjct: 364 TVIGKQTVRLSW 375
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 237 (88.5 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 62/199 (31%), Positives = 103/199 (51%)
Query: 39 PPRFDASTC---RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVD 91
PP +T R++++G++ + L F+ TG + K+I+ ++ YGF++
Sbjct: 50 PPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIE 109
Query: 92 YFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASS-QREDTSGHFNVFVGDLSPEVTDA 147
+ +A + T N I P ++NWA SS + D S + +FVGDL+ +VTD
Sbjct: 110 FASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDY 169
Query: 148 TLFACFSV-FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L F +P+ A+V+ D+ TGR++G+GFV F ++ + A+ ++NG R +R
Sbjct: 170 ILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
Query: 207 NWAA--KGATSG-DEKQSS 222
AA KG T D QSS
Sbjct: 230 GPAASKKGVTGQRDSYQSS 248
Score = 137 (53.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 56/202 (27%), Positives = 89/202 (44%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDK-----SSYGFVDYFDRR 96
D S +++VG++ VT+ +L E F ++ P ++G K++ D+ YGFV + D
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVI-DRVTGRTKGYGFVRFSDES 208
Query: 97 SAALAIVTLNGRHIFGQPIKVNWA------------YASSQREDTS----GHFNVFVGDL 140
A+ +NG +P+++ A Y SS T+ + VFVG L
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 141 SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200
VTD L FS + ++ G+ GFV F + A+ A+ LNG LG
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 201 NRQIRCNWAAKGAT--SGDEKQ 220
+R +W + SGD Q
Sbjct: 323 GTTVRLSWGRSPSNKQSGDPSQ 344
Score = 105 (42.0 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+N+P TTV+VG L + VT L F G I V++ K GFV++S A A
Sbjct: 255 DNDPNNTTVFVGGLDASVTDDHLKNVFSQY--GEIVHVKIPAGKRCGFVQFSEKSCAEEA 312
Query: 312 IQMGNARILCGKPIKCSW 329
++M N L G ++ SW
Sbjct: 313 LRMLNGVQLGGTTVRLSW 330
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 247 (92.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 69/204 (33%), Positives = 104/204 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S SY ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G SRG+GFV F E A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEH-G-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK----SRREREL 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEK 245
V+E TN F ED +K
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDK 205
Score = 226 (84.6 bits), Expect = 6.1e-22, Sum P(2) = 6.1e-22
Identities = 58/179 (32%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +GRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 160 (61.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 47/174 (27%), Positives = 85/174 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+FS+ G K++ D +GFV+Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
F + T + A+VM + G S+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 97 (39.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEA 308
N Q +YV NL + L + F L GTI +V + KGFGFV +S+ EA
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEA 346
Query: 309 ALAIQMGNARILCGKPI 325
A+ N RI+ KP+
Sbjct: 347 TKAVTEMNGRIVSTKPL 363
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 249 (92.7 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 70/204 (34%), Positives = 104/204 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G SRG+GFV F QE A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEH-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRREREL 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEK 245
V+E TN F ED +K
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDK 205
Score = 231 (86.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 59/179 (32%), Positives = 93/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D TGRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 48/174 (27%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+FS+ G K++ D +GFV+Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + T + A+VM + G S+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 94 (38.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEA 308
N Q +YV NL + L + F GTI +V + KGFGFV +S+ EA
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPY--GTITSAKVMTEGGHSKGFGFVCFSSPEEA 346
Query: 309 ALAIQMGNARILCGKPI 325
A+ N RI+ KP+
Sbjct: 347 TKAVTEMNGRIVSTKPL 363
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 55/118 (46%), Positives = 80/118 (67%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F S A
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISIA 126
Score = 110 (43.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
ED ++VG+LS +VT+ + FS C +++ + + + FV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
A +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN 95
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHAL--CVGTIEDVRVQRDKGFGFVRYSTHPEAA 309
E++ Q T+YVGNLS +VT V + + F + C + + FV + H +AA
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 310 LAIQMGNARILCGKPIKCSW 329
A+ N R + GK +K +W
Sbjct: 63 AALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 244 (91.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 66/208 (31%), Positives = 109/208 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 244 (91.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 66/208 (31%), Positives = 109/208 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 244 (91.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 66/208 (31%), Positives = 109/208 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 244 (91.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 66/208 (31%), Positives = 109/208 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 234 (87.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 58/194 (29%), Positives = 101/194 (52%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDY 92
N P + + RS+++G++ + L F TG L K+I+ ++ YGF+++
Sbjct: 73 NPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEF 132
Query: 93 FDRRSAALAIVTLNGRHI--FGQPIKVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATL 149
+A + T NG + Q ++NWA + +R D S +FVGDL+ +VTD L
Sbjct: 133 RSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYIL 192
Query: 150 FACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208
F SV+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG R +R
Sbjct: 193 QETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGP 252
Query: 209 AAKGATSGDEKQSS 222
AA G ++++
Sbjct: 253 AANKKPVGTPQKAT 266
Score = 153 (58.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 52/202 (25%), Positives = 89/202 (44%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKD----KSSYGFVDYFDR 95
R D S +++VG++ VT+ +LQE F S + G K++ YGFV + D
Sbjct: 169 RRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADE 228
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWA-------------YAS---SQREDTSGHFNVFVGD 139
A+ +NG +P+++ A Y + +Q E + +FVG
Sbjct: 229 SEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGG 288
Query: 140 LSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199
L P V + L FS + +++ ++ G FV F + A+ A++ LNG L
Sbjct: 289 LDPTVAEEHLRQVFSPYGELVHVKIVAGKRCG------FVQFGTRASAEQALSSLNGTQL 342
Query: 200 GNRQIRCNWA-AKGATSGDEKQ 220
G + IR +W + + D+ Q
Sbjct: 343 GGQSIRLSWGRSPSSKQTDQTQ 364
Score = 100 (40.3 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
E++P TT++VG L V L + F G + V++ K GFV++ T A A
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPY--GELVHVKIVAGKRCGFVQFGTRASAEQA 333
Query: 312 IQMGNARILCGKPIKCSW 329
+ N L G+ I+ SW
Sbjct: 334 LSSLNGTQLGGQSIRLSW 351
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 244 (91.0 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 66/208 (31%), Positives = 109/208 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 9.6e-22, Sum P(2) = 9.6e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 286 (105.7 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 92/301 (30%), Positives = 144/301 (47%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + + L + FS+ G + CK++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + R+ G F NV++ +L ++ D L
Sbjct: 151 AERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D+ +G+S+GFGFVSF EDA+ A++++NGK L +QI A K
Sbjct: 211 FSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSN-EDAPENNP---QYTTVYVGNLSSE 268
E+Q+ EL + F + Q+K E P++ Q +YV NL
Sbjct: 270 V----ERQT-------ELKHK----FGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDG 314
Query: 269 VTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKP 324
+ L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP
Sbjct: 315 IDDERLRKEFSPF--GTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 372
Query: 325 I 325
+
Sbjct: 373 L 373
Score = 242 (90.2 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 66/209 (31%), Positives = 111/209 (53%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIV 103
S+YVG++HP VT A+L E FS GP+ + + +D+++ Y V++ A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCS 160
T+N I G+P+++ W SQR+ + SG N+FV +L + TL+ FS F
Sbjct: 71 TMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNIL 126
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
+V+ D+ G S+G+GFV F QE+A+ AI +NG +L +R++ + + + D +Q
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKV---FVGRFKSRRD-RQ 180
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNED 249
+ E TN ED ++ +D
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQD 209
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 246 (91.7 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 69/204 (33%), Positives = 104/204 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G SRG+GFV F QE A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEY-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRREREL 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEK 245
V+E TN F ED +K
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDK 205
Score = 225 (84.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 57/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +GRSRGFGFV++ N E+AQ A+ ++NGK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Score = 158 (60.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 45/174 (25%), Positives = 85/174 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+FS+ G K++ + +GFV+Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + T + +VM + G S+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 94 (38.1 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEA 308
N Q +YV NL + L + F GTI +V + KGFGFV +S+ EA
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPY--GTITSTKVMTEGGHSKGFGFVCFSSPEEA 346
Query: 309 ALAIQMGNARILCGKPI 325
A+ N RI+ KP+
Sbjct: 347 TKAVTEMNGRIVSTKPL 363
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 241 (89.9 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 65/200 (32%), Positives = 105/200 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED 241
E TN F ED
Sbjct: 182 ELGARAKEFTNVYIKNFGED 201
Score = 225 (84.3 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 168 (64.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 50/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 241 (89.9 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 65/200 (32%), Positives = 105/200 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED 241
E TN F ED
Sbjct: 182 ELGARAKEFTNVYIKNFGED 201
Score = 225 (84.3 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 168 (64.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 50/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 242 (90.2 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 65/200 (32%), Positives = 106/200 (53%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI+ +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED 241
E TN F ED
Sbjct: 182 ELGARAKEFTNVYIKNFGED 201
Score = 216 (81.1 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 56/179 (31%), Positives = 89/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F + +VM D G+SRGFGFVSF EDAQ A++D+NGK L + I A K
Sbjct: 211 FGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Score = 151 (58.2 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 48/174 (27%), Positives = 84/174 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KS-SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E F G K++ D KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
F+ F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 93 (37.8 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPF--GSITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
Score = 37 (18.1 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 370 KIAGAQALMHPQAQHALKLGMGAAGASQ 397
++A Q +H Q Q L M AA Q
Sbjct: 527 QVAMQQPAVHVQGQEPLTASMLAAAPPQ 554
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 247 (92.0 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 56/160 (35%), Positives = 92/160 (57%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E+FS G + C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I GQPI++ W++ SG N+F+ +L + + L+ FS F + ++V
Sbjct: 72 MNFEMIKGQPIRIMWSHRDPGLR-RSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
++++ G SRGFGFV F E AQ AIN +NG L +R++
Sbjct: 131 VYNEH-G-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV 168
Score = 202 (76.2 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 65/266 (24%), Positives = 124/266 (46%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFV 90
I+ + P S ++++ N+ + N L + FS+ G + K++ + S +GFV
Sbjct: 84 IMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFV 143
Query: 91 DYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED-----TSGHFNVFVGDLSPEVT 145
+ +A AI T+NG + + + V + +RE G N++V +L ++
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMD 203
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+ L FS F +VM D G+SRGFGF++F E+AQ A++ +NGK + + +
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLY 262
Query: 206 CNWAAKGATSGDEKQSSDSKSVVELTN---GISVLFAEDGQEKSNEDAPENNPQYTTVYV 262
A K A +E + + E N G++ L+ ++ + N+D + ++T V
Sbjct: 263 VGRAQKRAERQNELKRRFEQMKQERQNRYQGVN-LYVKNLDDSINDDRLKE--VFSTYGV 319
Query: 263 GNLSSEVTSVDLHRHFHALCVGTIED 288
+ +T + F +C + E+
Sbjct: 320 ITSAKVMTESSHSKGFGFVCFSSPEE 345
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++YV N+ + LQ++FS G + K+++ +GF+++ A A+ +
Sbjct: 192 NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + GQ + V A ++R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + + A+VM + + S+GFGFV F + E+A A+ ++NG+ +G + +
Sbjct: 312 EVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 145 (56.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 128 DTSGH----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN 183
DT GH +++VGDL P+VT+A L+ FS T RV D T RS G+ +++F+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 184 QEDAQSAINDLNGKWLGNRQIRCNWA 209
DA+ A++ +N + + + IR W+
Sbjct: 62 PADAERALDTMNFEMIKGQPIRIMWS 87
Score = 89 (36.4 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAA 309
+N Q +YV NL + L F V T V + KGFGFV +S+ EA
Sbjct: 288 QNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEAT 347
Query: 310 LAIQMGNARILCGKPI 325
A+ N RI+ KP+
Sbjct: 348 KAVTEMNGRIVGTKPL 363
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 247 (92.0 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 60/163 (36%), Positives = 90/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N + GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+ G SRGFGFV F E AQ AIN +NG L +R++
Sbjct: 128 CKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Score = 189 (71.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK+ + S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F N++V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G SR FGFV+F E+AQ A+ +NGK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 163 (62.4 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++YV N+ V LQ++FS G + K+++ + +GFV++ A A+V +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ + A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + + A+VM + G S+GFGFV F + E+A A+ ++NG+ +G + +
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 131 (51.2 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + L + IR W+ +
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
Score = 89 (36.4 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQ 313
Q +YV NL + L + F V T V + KGFGFV +S+ EA A+
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 314 MGNARILCGKPI 325
N RI+ KP+
Sbjct: 352 EMNGRIVGTKPL 363
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 282 (104.3 bits), Expect = 7.2e-24, P = 7.2e-24
Identities = 78/294 (26%), Positives = 142/294 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAI 102
++++G++ P + +Q++++S K+++ SS Y FV + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 103 VTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SV 155
+ N I G K+NWA + + F++FVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+C+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA------ 259
Query: 216 GDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
S S++ + + + ++ + N+D +P TTV+VG L+S ++ DL
Sbjct: 260 -----SPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQ 314
Query: 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
F G I ++++ KG GFV+YS A AI ++ I+ +W
Sbjct: 315 VCFQPF--GRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAW 366
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 246 (91.7 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 60/163 (36%), Positives = 92/163 (56%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V+ D+ G SRGFGFV F E AQ+AI+ +NG L +R++
Sbjct: 128 CKVVCDEH-G-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Score = 200 (75.5 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 54/179 (30%), Positives = 90/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F N++V +L +V + L
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G SRGFGFV+F E+AQ A+ ++NG+ + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Score = 191 (72.3 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
++YV N+H V LQ++FS G + K+++ D +GFV++ A A+V +
Sbjct: 192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NGR + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + + A+VM + G S+GFGFV F + E+A A+ ++NG+ +G + +
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 127 (49.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + + IR W+ +
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
Score = 90 (36.7 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQ 313
Q +YV NL + L + F V T V + KGFGFV +S+ EA A+
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 314 MGNARILCGKPI 325
N RI+ KP+
Sbjct: 352 EMNGRIVGTKPL 363
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 240 (89.5 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 65/208 (31%), Positives = 108/208 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP T A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 242 (90.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 60/163 (36%), Positives = 89/163 (54%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V+ D G SRGFGFV F E AQ AI +NG L +R++
Sbjct: 128 CKVVCDDH-G-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKV 168
Score = 215 (80.7 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 57/179 (31%), Positives = 91/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ D S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F N++V +L +V + L
Sbjct: 151 AQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G SRGFGFV+F+ E+AQ A+ D+NGK + R + A K
Sbjct: 211 FSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Score = 184 (69.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 49/174 (28%), Positives = 88/174 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
++YV N+H V LQ++FS G + K+++ D +GFV++ A A++ +
Sbjct: 192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + + A+VM + G S+GFGFV F + E+A A+ ++NG+ LG + +
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPL 363
Score = 127 (49.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + + IR W+ +
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
Score = 93 (37.8 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQ 313
Q +YV NL + L + F V T V + KGFGFV +S+ EA A+
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 314 MGNARILCGKPI 325
N RIL KP+
Sbjct: 352 EMNGRILGTKPL 363
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 225 (84.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 54/161 (33%), Positives = 89/161 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ P V+ A L ++FS G + C+ I K Y +V++ D + AI
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 105 LNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN I G+ ++ W+ S R+ SG N+F+ +L P++ + L+ FSVF ++
Sbjct: 99 LNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ D+ G+S+GFGFV F + A+ AI+ LNG L ++I
Sbjct: 157 IATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 53/171 (30%), Positives = 85/171 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS G + K+ + KS +GFV + + +A AI L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 106 NGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + GQ I V + SQ E+T H+ N++V +++ E TD F+ F
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
A + D G+ +GFGFV++ EDA A+ LN L ++ A K
Sbjct: 247 SASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Score = 122 (48.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
+ SQ + S +++VGDL P V++A L+ FS + S RV D T S G+ +V+F
Sbjct: 28 SESQSVENSSA-SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 86
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ E + AI LN + R R W+ +
Sbjct: 87 NDHEAGRKAIEQLNYTPIKGRLCRIMWSQR 116
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 38/124 (30%), Positives = 59/124 (47%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-------------EDTSGH- 132
+GFV+Y A A+ LN + G+ + V A ++R E + +
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 133 -FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
N+FV +L V D L F+ + T + A+VM + G+S+GFGFV F E+A AI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAI 379
Query: 192 NDLN 195
+ N
Sbjct: 380 TEKN 383
Score = 110 (43.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 216 GDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDA-PENNPQYTTVYVGNLSSEVTSVDL 274
G K++ D+ + + L NG + A K + E YT +YV N++SE T
Sbjct: 177 GAAKEAIDALNGM-LLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQF 235
Query: 275 HRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
F G I +++D KGFGFV Y H +A A++ N L G+ +
Sbjct: 236 QELFAKF--GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL 289
Score = 101 (40.6 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 29/75 (38%), Positives = 36/75 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-----DKGFGFVRYSTHPEAAL 310
Q ++V NL V L F GTI +V R KGFGFV +ST EA
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPY--GTITSAKVMRTENGKSKGFGFVCFSTPEEATK 377
Query: 311 AIQMGNARILCGKPI 325
AI N +I+ GKP+
Sbjct: 378 AITEKNQQIVAGKPL 392
Score = 61 (26.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
+++ NL ++ + L+ F G I ++ D KGFGFV + A AI
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVF--GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDA 185
Query: 315 GNARILCGKPI 325
N +L G+ I
Sbjct: 186 LNGMLLNGQEI 196
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 247 (92.0 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 60/163 (36%), Positives = 90/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N + GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+ G SRGFGFV F E AQ AIN +NG L +R++
Sbjct: 128 CKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Score = 189 (71.6 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK+ + S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F N++V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G SR FGFV+F E+AQ A+ +NGK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 131 (51.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + L + IR W+ +
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
Score = 37 (18.1 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 293
Q +YV NL + L + F V T R QR
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKKRRQR 329
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 232 (86.7 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 65/208 (31%), Positives = 108/208 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI+ +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED-GQEKSNE 248
E TN F +D E+ E
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKE 209
Score = 207 (77.9 bits), Expect = 5.8e-20, Sum P(3) = 5.8e-20
Identities = 52/179 (29%), Positives = 89/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F + +VM D G+S+GFGFVSF EDAQ A++++NGK + + + A K
Sbjct: 211 FGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Score = 161 (61.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 49/174 (28%), Positives = 85/174 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F GP K++ D KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
F F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 100 (40.3 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 28/74 (37%), Positives = 37/74 (50%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F L GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEF--LPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
Score = 37 (18.1 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 370 KIAGAQALMHPQAQHALKLGMGAAGASQ 397
++A Q +H Q Q L M AA Q
Sbjct: 527 QVAMQQPAVHVQGQEPLTASMLAAAPPQ 554
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 237 (88.5 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 66/208 (31%), Positives = 107/208 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ ++ + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F E A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED-GQEKSNE 248
E TN F ED EK E
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKE 209
Score = 217 (81.4 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 54/179 (30%), Positives = 90/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F + RVM D +G+S+GFGFVSF EDAQ A++++NGK + +Q+ A K
Sbjct: 211 FCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQK 268
Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F GP +++ D KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE------------DTSGHF---NVFVGDLSPEVTDATLF 150
NG+ + G+ + V A +R+ D + N++V +L + D L
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 96 (38.9 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGLDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 235 (87.8 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 58/163 (35%), Positives = 90/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ LI S+Y +V++ + A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+FV +L + + L+ S F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
V+ D+ G S+G+GFV F E A+ AI +NG L R++
Sbjct: 128 CNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 221 (82.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 56/179 (31%), Positives = 90/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + N L + S+ G + C ++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + G+ + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE------------DTSGHF---NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 116 (45.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 98 (39.6 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 244 (91.0 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 61/163 (37%), Positives = 90/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I GQPI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGQPIRIMW----SQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V+ D G SRGFGFV F E AQ+AI +NG L +R++
Sbjct: 128 CKVVCDDH-G-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Score = 220 (82.5 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 59/179 (32%), Positives = 90/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ D S +GFV + +
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F N++V +L +V + L
Sbjct: 151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G SRGFGFV+F EDAQ A+ D+NGK + R + A K
Sbjct: 211 FSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQK 268
Score = 180 (68.4 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 47/174 (27%), Positives = 87/174 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
++YV N+H V LQ++FS G + K+++ D +GFV++ A A+ +
Sbjct: 192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
F+ + + A+VM + G S+GFGFV F + E+A A+ ++NG+ +G + +
Sbjct: 312 KEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 127 (49.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + + IR W+ +
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
Score = 86 (35.3 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQ 313
Q +YV NL + L + F + T V + KGFGFV +S+ EA A+
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 314 MGNARILCGKPI 325
N RI+ KP+
Sbjct: 352 EMNGRIVGTKPL 363
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 235 (87.8 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 57/170 (33%), Positives = 98/170 (57%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KS-SYGFVDYFDR 95
P F ST S+YVG+++ VT A+L E+F++ G + ++ + KS Y +V+Y +
Sbjct: 11 PSF--STA-SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNL 67
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFS 154
A A+ TLN +I GQP ++ W++ S R+ +G N+FV +L + + LF FS
Sbjct: 68 ADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTG--NIFVKNLDKSIDNKALFDTFS 125
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+F +V D+ G+S+ +GFV + ++E A+ AI +NG LG++ +
Sbjct: 126 MFGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 173 (66.0 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 63/229 (27%), Positives = 105/229 (45%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KS-SYGFVDYFDRR 96
P S +++V N+ + N L + FS G + CK+ + KS SYGFV Y D
Sbjct: 96 PSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEE 155
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSV 155
SA AI +NG + + + V S+R F N++V + VT+ L F+
Sbjct: 156 SAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-GNRQIRCNWAAK--- 211
+ + V D K +R F F+++ + E A++A+++LNGK + + QI + K
Sbjct: 216 YGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEE 272
Query: 212 --GATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYT 258
+TSG Q++ + + + T+ D EK + NN T
Sbjct: 273 ATASTSGAANQTTGTDA--DKTDKNDKNNKADKNEKGDSSNANNNATAT 319
Score = 122 (48.0 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL+ +VT+A L+ F+ S RV D T +S G+ +V++ N DA+ A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 194 LNGKWLGNRQIRCNWA 209
LN + + R W+
Sbjct: 77 LNYTNIKGQPARLMWS 92
Score = 100 (40.3 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHP 306
+N Q +Y+ NL + + L F GTI +V RD KGFGFV +++
Sbjct: 444 KNKHQGVNLYIKNLDDGIDDIMLRELFEPF--GTITSAKVMRDEKEQSKGFGFVCFASQE 501
Query: 307 EAALAIQMGNARILCGKPI 325
EA A+ + +I+ GKP+
Sbjct: 502 EANKAVTEMHLKIINGKPL 520
Score = 51 (23.0 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAI-- 312
++V NL + + L F G I +V D K +GFV Y A AI
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMF--GNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEK 163
Query: 313 ----QMGNARILCGKPIKCS 328
Q+G+ + G IK S
Sbjct: 164 VNGVQLGSKNVYVGPFIKKS 183
Score = 39 (18.8 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 354 FSATDLAAYERQIALSKIAGAQALMHPQA-QHALKLGMGAAGA--SQAIYDSSGFQN 407
F+ +L ++ Q A + A Q +H QA Q L G +Y + N
Sbjct: 583 FNQNNLISWRHQQAAQQQAVHQQAVHQQAAQQQLNFNTNLRGQINQMRLYTQNNMMN 639
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 235 (87.8 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 57/170 (33%), Positives = 98/170 (57%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KS-SYGFVDYFDR 95
P F ST S+YVG+++ VT A+L E+F++ G + ++ + KS Y +V+Y +
Sbjct: 11 PSF--STA-SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNL 67
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFS 154
A A+ TLN +I GQP ++ W++ S R+ +G N+FV +L + + LF FS
Sbjct: 68 ADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTG--NIFVKNLDKSIDNKALFDTFS 125
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+F +V D+ G+S+ +GFV + ++E A+ AI +NG LG++ +
Sbjct: 126 MFGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 173 (66.0 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 63/229 (27%), Positives = 105/229 (45%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KS-SYGFVDYFDRR 96
P S +++V N+ + N L + FS G + CK+ + KS SYGFV Y D
Sbjct: 96 PSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEE 155
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSV 155
SA AI +NG + + + V S+R F N++V + VT+ L F+
Sbjct: 156 SAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-GNRQIRCNWAAK--- 211
+ + V D K +R F F+++ + E A++A+++LNGK + + QI + K
Sbjct: 216 YGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEE 272
Query: 212 --GATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYT 258
+TSG Q++ + + + T+ D EK + NN T
Sbjct: 273 ATASTSGAANQTTGTDA--DKTDKNDKNNKADKNEKGDSSNANNNATAT 319
Score = 122 (48.0 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL+ +VT+A L+ F+ S RV D T +S G+ +V++ N DA+ A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 194 LNGKWLGNRQIRCNWA 209
LN + + R W+
Sbjct: 77 LNYTNIKGQPARLMWS 92
Score = 100 (40.3 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHP 306
+N Q +Y+ NL + + L F GTI +V RD KGFGFV +++
Sbjct: 444 KNKHQGVNLYIKNLDDGIDDIMLRELFEPF--GTITSAKVMRDEKEQSKGFGFVCFASQE 501
Query: 307 EAALAIQMGNARILCGKPI 325
EA A+ + +I+ GKP+
Sbjct: 502 EANKAVTEMHLKIINGKPL 520
Score = 51 (23.0 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAI-- 312
++V NL + + L F G I +V D K +GFV Y A AI
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMF--GNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEK 163
Query: 313 ----QMGNARILCGKPIKCS 328
Q+G+ + G IK S
Sbjct: 164 VNGVQLGSKNVYVGPFIKKS 183
Score = 39 (18.8 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 354 FSATDLAAYERQIALSKIAGAQALMHPQA-QHALKLGMGAAGA--SQAIYDSSGFQN 407
F+ +L ++ Q A + A Q +H QA Q L G +Y + N
Sbjct: 583 FNQNNLISWRHQQAAQQQAVHQQAVHQQAAQQQLNFNTNLRGQINQMRLYTQNNMMN 639
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 207 (77.9 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192
F++FVGDLS E+ L F+ F SD RV+ D +T +S+G+GFVSF + +A+SAI
Sbjct: 461 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 520
Query: 193 DLNGKWLGNRQIRCNWAAKGATSGDE 218
+NG+WLG+R IR NWA + + E
Sbjct: 521 AMNGQWLGSRSIRTNWATRKPPASKE 546
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 41/187 (21%), Positives = 86/187 (45%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTL 105
++VG++ ++ L+E F+ G + C++++ ++ YGFV + + A AI +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 106 NGRHIFGQPIKVNWAY----ASSQR-----------EDTSGHFNVFVGDLSPEVTDATLF 150
NG+ + + I+ NWA AS + + + + V+VG ++ +T +
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEE 582
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F + + + + +G+ FV F +E A AI ++ + + ++C+W
Sbjct: 583 VLQKTFAPYG---AIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSW-- 637
Query: 211 KGATSGD 217
G SGD
Sbjct: 638 -GKESGD 643
Score = 133 (51.9 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVD---LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEA 308
+++P TVYVG ++S +T++ L + F G I+++RV +DKG+ FVR+ST A
Sbjct: 559 QSSPSNCTVYVGGVNSALTALSEEVLQKTFAPY--GAIQEIRVFKDKGYAFVRFSTKEAA 616
Query: 309 ALAIQMGNARILCGKPIKCSW 329
AI + + +P+KCSW
Sbjct: 617 THAIVGVHNTEINAQPVKCSW 637
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 221 (82.9 bits), Expect = 8.0e-23, Sum P(2) = 8.0e-23
Identities = 54/170 (31%), Positives = 90/170 (52%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDR 95
P A T S+YVG + P VT A+L E+F+S GP+ C+ + + Y +V++ +
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFS 154
A+ LN I G+P ++ W+ S R+ +G NVF+ +L P + + L FS
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTG--NVFIKNLDPAIDNKALHDTFS 189
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
F +V D+ G ++G+GFV F + E A +AI +NG L ++++
Sbjct: 190 AFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 189 (71.6 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 56/212 (26%), Positives = 105/212 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+V++ N+ P + N L + FS+ G + CK+ + + YGFV + SA AI +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + +R E +F NV++ +L E+T+ F F +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
++ DQ + RGFGFV++ N E AQ A+++LN K +++ A K +E +
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 221 SSDSKSVVELTN---GISVLFAEDGQEKSNED 249
+ +E N G++ LF ++ Q++ +++
Sbjct: 348 KRYEQMKLEKMNKYQGVN-LFIKNLQDEVDDE 378
Score = 154 (59.3 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 81 KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH------- 132
+ DK +GFV+Y + A A+ LN + G+ + V A +RE+
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKL 355
Query: 133 --------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184
N+F+ +L EV D L A FS F T + A++M D++ G+S+GFGFV +
Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTP 414
Query: 185 EDAQSAINDLNGKWLGNRQI 204
E+A A+ ++N + L + +
Sbjct: 415 EEANKAVTEMNQRMLAGKPL 434
Score = 143 (55.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 134 NVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192
+++VG+L P VT+A LF F S+ P S RV D T RS G+ +V+F N ED + A++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVAS-IRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 193 DLNGKWLGNRQIRCNWAAK 211
+LN + R R W+ +
Sbjct: 140 ELNYTLIKGRPCRIMWSQR 158
Score = 112 (44.5 bits), Expect = 8.0e-23, Sum P(2) = 8.0e-23
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPE 307
N Q +++ NL EV L F A GTI ++ D KGFGFV Y+T E
Sbjct: 359 NKYQGVNLFIKNLQDEVDDERLKAEFSAF--GTITSAKIMTDEQGKSKGFGFVCYTTPEE 416
Query: 308 AALAIQMGNARILCGKPI 325
A A+ N R+L GKP+
Sbjct: 417 ANKAVTEMNQRMLAGKPL 434
Score = 91 (37.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC-VGTIEDVRVQRDK--GFGF 299
+ +S +A + N +T VY+ NL +E+T + F + ++ V+ Q DK GFGF
Sbjct: 248 ERQSKVEALKAN--FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGF 305
Query: 300 VRYSTHPEAALAIQMGNARILCGKPI 325
V Y+ H A A+ N + GK +
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKL 331
Score = 67 (28.6 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
V++ NL + + LH F A G I +V D KG+GFV + + A AI+
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAF--GKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEH 227
Query: 315 GNARILCGKPI 325
N +L K +
Sbjct: 228 VNGMLLNDKKV 238
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 272 (100.8 bits), Expect = 8.1e-23, P = 8.1e-23
Identities = 72/228 (31%), Positives = 118/228 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVT 270
++ ++ N +S D + DAP P T V L VT
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSVPTPVVTALGPGVT 233
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 231 (86.4 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 68/216 (31%), Positives = 109/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E+ E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDENLKELFSQF 214
Score = 206 (77.6 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 179 (68.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 94 (38.1 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 522 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 552
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 235 (87.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 65/200 (32%), Positives = 101/200 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPVRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G SRG GFV F QE A AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDEN-G-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFK----SRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED 241
+E TN F +D
Sbjct: 182 EFGARAMEFTNVYIKNFGDD 201
Score = 224 (83.9 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 57/179 (31%), Positives = 91/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S +GFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 ATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D TGRS+GFGFV+F E+AQ A+ D+NGK + R + A K
Sbjct: 211 FSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Score = 155 (59.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 46/174 (26%), Positives = 84/174 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+FS G K++ +GFV++ A A+ +
Sbjct: 192 NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
NG+ I G+ + V A + ++E S + N++V +L + D L
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS + T + A+VM + G S+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 92 (37.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V + KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPY--GTITSAKVMTEGGHSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVSTKPL 363
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 231 (86.4 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 68/216 (31%), Positives = 109/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E+ E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDENLKELFSQF 214
Score = 204 (76.9 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Score = 179 (68.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 94 (38.1 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 536 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 566
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 230 (86.0 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 68/216 (31%), Positives = 108/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDESLKELFSQF 214
Score = 205 (77.2 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 179 (68.1 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 94 (38.1 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 506 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 536
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 204 (76.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 41/87 (47%), Positives = 58/87 (66%)
Query: 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192
F++FVGDLS E+ L F+ F SD RV+ D +T +S+G+GFVSF + +A++AI
Sbjct: 96 FHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAIT 155
Query: 193 DLNGKWLGNRQIRCNWAAKG--ATSGD 217
+NG+WLG+R IR NWA + AT D
Sbjct: 156 AMNGQWLGSRSIRTNWATRKPPATKAD 182
Score = 146 (56.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 45/194 (23%), Positives = 87/194 (44%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTL 105
++VG++ ++ L++ F+ G + C++++ ++ YGFV + + A AI +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 106 NGRHIFGQPIKVNWAYAS--SQREDTSGH---FNVFVGDLSPEVTDATLFA-----CFSV 155
NG+ + + I+ NWA + + D + F+ SP T+ T++ S
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSP--TNCTVYCGGINGALSG 215
Query: 156 F-------PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208
F T S + + + + +G+ FV F +E A AI +N + + ++C W
Sbjct: 216 FLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAW 275
Query: 209 AAKGATSGDEKQSS 222
G SGD S
Sbjct: 276 ---GKESGDPNHMS 286
Score = 125 (49.1 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 244 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS 303
E N+ +P N Y G LS + L + F GTI+++RV +DKG+ FVR+S
Sbjct: 192 EVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPY--GTIQEIRVFKDKGYAFVRFS 249
Query: 304 THPEAALAIQMGNARILCGKPIKCSW 329
T A AI N + +P+KC+W
Sbjct: 250 TKEAATHAIVAVNNTEINQQPVKCAW 275
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 230 (86.0 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 68/216 (31%), Positives = 109/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E+ E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDENLRELFSQF 214
Score = 206 (77.6 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D L
Sbjct: 151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 177 (67.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 51/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 124 (48.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 52/182 (28%), Positives = 79/182 (43%)
Query: 163 RVMWDQKTG--RSRGFGFVSFRNQEDA--QSAINDLNGKWLGNR---QIRCNW-AAKG-A 213
R+MW Q+ R G G V +N + + A+ D + GN ++ C+ +KG A
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYA 141
Query: 214 TSGDEKQSSDSKSVVE----LTNGISVLFAEDGQEKSNE-DAPENNPQYTTVYVGNLSSE 268
E Q + +K++ + L N V K E + ++T VY+ N E
Sbjct: 142 FVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
Query: 269 VTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 323
V +L F G V+V RD KGFGFV Y H +A A++ N + + GK
Sbjct: 202 VDDENLRELFSQF--GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Query: 324 PI 325
I
Sbjct: 260 SI 261
Score = 94 (38.1 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 522 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 552
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 230 (86.0 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 68/216 (31%), Positives = 108/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDESLKELFSQF 214
Score = 207 (77.9 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 55/179 (30%), Positives = 89/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 180 (68.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 94 (38.1 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 522 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 552
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 235 (87.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 58/163 (35%), Positives = 90/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ LI S+Y +V++ + A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+FV +L + + L+ S F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
V+ D+ G S+G+GFV F E A+ AI +NG L R++
Sbjct: 128 CNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 221 (82.9 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 56/179 (31%), Positives = 90/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + N L + S+ G + C ++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + G+ + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 46/157 (29%), Positives = 76/157 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE------------DTSGHF---NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
FS F T + A+VM + GRS+GFGFV F + E+A
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Score = 116 (45.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 71 (30.1 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEA 308
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEA 346
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 230 (86.0 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 68/216 (31%), Positives = 108/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDESLKELFSQF 214
Score = 205 (77.2 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 179 (68.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 94 (38.1 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 535 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 565
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 230 (86.0 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 68/216 (31%), Positives = 109/216 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E+ E Q+
Sbjct: 182 ELGAKAKEFTN---VYIKNFGEEVDDENLRELFSQF 214
Score = 206 (77.6 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D L
Sbjct: 151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 177 (67.4 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 51/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 124 (48.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 52/182 (28%), Positives = 79/182 (43%)
Query: 163 RVMWDQKTG--RSRGFGFVSFRNQEDA--QSAINDLNGKWLGNR---QIRCNW-AAKG-A 213
R+MW Q+ R G G V +N + + A+ D + GN ++ C+ +KG A
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYA 141
Query: 214 TSGDEKQSSDSKSVVE----LTNGISVLFAEDGQEKSNE-DAPENNPQYTTVYVGNLSSE 268
E Q + +K++ + L N V K E + ++T VY+ N E
Sbjct: 142 FVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
Query: 269 VTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 323
V +L F G V+V RD KGFGFV Y H +A A++ N + + GK
Sbjct: 202 VDDENLRELFSQF--GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Query: 324 PI 325
I
Sbjct: 260 SI 261
Score = 94 (38.1 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
Score = 38 (18.4 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 581
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 228 (85.3 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 57/163 (34%), Positives = 91/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FSS GP+ ++ I + Y V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG NVF+ +L+ + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V+ D+ G S+G GFV F +E A+ AI +NG L +R++
Sbjct: 128 CKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Score = 216 (81.1 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 56/179 (31%), Positives = 90/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N++ + N L + FS+ G + CK++ + S +GFV + +
Sbjct: 91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + + D TL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ G+S+GFGFVSF EDAQ A++++NGK L + I A K
Sbjct: 211 FGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQK 268
Score = 147 (56.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 47/174 (27%), Positives = 84/174 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N ++ + L +F G + K++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQR------------EDTSGHF---NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A R +D + N++V +L + D L
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQ 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + +VM + GRS+GFGFV F + E+A A++++NG+ + + +
Sbjct: 312 KEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPL 363
Score = 118 (46.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ V+F DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 98 (39.6 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 292 QGINLYVKNLDDGIDDERLQKEFSPF--GTITSTKVMTEGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VSEMNGRIVATKPL 363
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 216 (81.1 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 57/162 (35%), Positives = 86/162 (53%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIV 103
S+YVG++HP VT +L + F+ L +L K D SS YG+ ++ R+ A LAI
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCK-DASSGRSLCYGYANFLSRQDANLAIE 83
Query: 104 TLNGRHIFGQPIKVNWAY-ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N + G+ I+V W+ A R + G NVFV +L VT+A L F F
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVG--NVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V + G+SRG+GFV F ++ A +AI LN + +++I
Sbjct: 142 KVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 178 (67.7 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 51/169 (30%), Positives = 85/169 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL--IKKDKS-SYGFVDYFDRRSAALAIVTL 105
+V+V N+ VTNA+LQ++F G + CK+ ++ KS YGFV + +A AI TL
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 106 NGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
N + + I V + R + + N+++ +L +V++ L F+ F +
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
D+ RG+ FV+F N EDA+ A +NG G++ + A K A
Sbjct: 233 AKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKA 280
Score = 143 (55.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFV 179
A ASS + +++VGDL P VT+ L+ F+ F + + R+ D +GRS +G+
Sbjct: 11 ADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYA 70
Query: 180 SFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+F +++DA AI N L + IR W+ +
Sbjct: 71 NFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Score = 111 (44.1 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 237 LFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-- 294
L E +EK E + + + +YV N++ VT +L +HF + C GTI ++ D
Sbjct: 285 LLREQFKEKHEEQ--KMIAKVSNIYVKNVNVAVTEEELRKHF-SQC-GTITSTKLMCDEK 340
Query: 295 ---KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
KGFGFV +ST EA A++ + ++ GKP+
Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374
Score = 80 (33.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 260 VYVGNLSSEVTSV---DLHRHFHAL--C-VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQ 313
V+V NL VT+ D+ + F + C V T+ED + +G+GFV++ A AIQ
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED---GKSRGYGFVQFEQEDAAHAAIQ 170
Query: 314 MGNARILCGKPI 325
N+ I+ K I
Sbjct: 171 TLNSTIVADKEI 182
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 229 (85.7 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 62/200 (31%), Positives = 103/200 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP +T A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N + G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 73 MNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F Q+ A AI +NG L +R++ + + S E+++
Sbjct: 129 CKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 182
Query: 222 SDSKSVVELTNGISVLFAED 241
E TN F +D
Sbjct: 183 EMGAKAKEFTNVYIKNFGDD 202
Score = 195 (73.7 bits), Expect = 7.6e-18, Sum P(3) = 7.6e-18
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 92 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 151
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 152 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKEL 211
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F + +VM D TG+SRGFGFVS+ EDA A+ ++NG L + + A K
Sbjct: 212 FDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQK 269
Score = 164 (62.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 48/174 (27%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KS-SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F G K++ KS +GFV Y A A+ +
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG + G+ + V A +R+ + F N+++ +L + D L
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM ++ GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 313 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Score = 126 (49.4 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 129 TSGHF---NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQE 185
T+G + +++VGDL P++T+A L+ FS RV D T RS G+ +V+F+
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 64
Query: 186 DAQSAINDLNGKWLGNRQIRCNWAAK 211
DA+ A++ +N + + IR W+ +
Sbjct: 65 DAERALDTMNFDVVKGKPIRIMWSQR 90
Score = 94 (38.1 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEEGRSKGFGFVCFSSPEEATKA 350
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 351 VTEMNGRIVGSKPL 364
Score = 37 (18.1 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 374 AQALMHPQAQHALKLGMGAAGASQ 397
AQ +H Q Q L M AA Q
Sbjct: 532 AQPAVHVQGQEPLTASMLAAAPPQ 555
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/225 (31%), Positives = 117/225 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS 267
++ ++ N +S D + DAP P V +L S
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSLGS 230
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/225 (31%), Positives = 117/225 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS 267
++ ++ N +S D + DAP P V +L S
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSLGS 230
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/225 (31%), Positives = 117/225 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS 267
++ ++ N +S D + DAP P V +L S
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSLGS 230
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/225 (31%), Positives = 117/225 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS 267
++ ++ N +S D + DAP P V +L S
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSLGS 230
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/225 (31%), Positives = 117/225 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS 267
++ ++ N +S D + DAP P V +L S
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSLGS 230
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/225 (31%), Positives = 117/225 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS 267
++ ++ N +S D + DAP P V +L S
Sbjct: 190 AAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSLGS 230
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 227 (85.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 64/208 (30%), Positives = 106/208 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS G + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED + +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKD 209
Score = 220 (82.5 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 56/179 (31%), Positives = 91/179 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS + RVM D+ G+SRGFGFVSF EDAQ A++++NGK + + I A K
Sbjct: 211 FSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQK 268
Score = 161 (61.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KS-SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++FS G +++ + KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE------------DTSGHF---NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM D GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 98 (39.6 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V D KGFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMDGGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVATKPL 363
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 230 (86.0 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 64/200 (32%), Positives = 103/200 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+ FV F Q+ A AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED 241
E TN F +D
Sbjct: 182 ELGAKAKEFTNVYIKNFGDD 201
Score = 202 (76.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 53/179 (29%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS + +VM D TG+S+GFGFVSF EDA A+ ++NGK + + + A K
Sbjct: 211 FSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 165 (63.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+FS G K++ KS +GFV + A A+ +
Sbjct: 192 NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ + V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 94 (38.1 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVGSKPL 363
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 225 (84.3 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 27 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 86
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 87 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 146
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 147 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 204
Score = 168 (64.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 50/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F GP K++ + KS +GFV + A A+ +
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 248 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Score = 155 (59.6 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 46/147 (31%), Positives = 75/147 (51%)
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFS 154
A A+ T+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS
Sbjct: 1 AERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 56
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214
F +V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + +
Sbjct: 57 AFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FK 110
Query: 215 SGDEKQSSDSKSVVELTNGISVLFAED 241
S E+++ E TN F ED
Sbjct: 111 SRKEREAELGARAKEFTNVYIKNFGED 137
Score = 98 (39.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 228 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 285
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 286 VTEMNGRIVATKPL 299
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 173 (66.0 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
DARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q
Sbjct: 2 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 61
Query: 221 SSDSKSV 227
+++K +
Sbjct: 62 ENNTKQL 68
Score = 133 (51.9 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH AA A
Sbjct: 76 QSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHA 133
Query: 312 IQMGNARILCGKPIKCSW 329
I N + G +KC W
Sbjct: 134 IVSVNGTTIEGHVVKCYW 151
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 38/143 (26%), Positives = 65/143 (45%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-HFN 134
K K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T F
Sbjct: 13 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 71
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARV---------MWDQKTGRSRGFGFVSFRNQE 185
V SP+ + T++ C + +D + + + + +G+ FV F E
Sbjct: 72 DVVNQSSPK--NCTVY-CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHE 128
Query: 186 DAQSAINDLNGKWLGNRQIRCNW 208
A AI +NG + ++C W
Sbjct: 129 SAAHAIVSVNGTTIEGHVVKCYW 151
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 214 (80.4 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
Identities = 65/220 (29%), Positives = 105/220 (47%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKSSYGFVDYFDRR 96
P S ++++ N+ + + L E FS+ GP+ CK+ YGFV Y
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDE 184
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---F-NVFVGDLSPEVTDATLFAC 152
+A AI LNG + + + V + + D SG F NV+V +LS ++D L
Sbjct: 185 AAQGAIDKLNGMLLNDKQVYVG-PFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKV 243
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F + +M D + G+S+GFGFV+F N +DA A++ LNGK +++ A K
Sbjct: 244 FGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 302
Query: 213 ATSGDE-KQSSDS--KSVVELTNGISVLFAEDGQEKSNED 249
+ E KQ + K + + G S L+ ++ E +D
Sbjct: 303 SERETELKQKFEQSLKEAADKSQG-SNLYVKNLDESVTDD 341
Score = 192 (72.6 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 52/161 (32%), Positives = 87/161 (54%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++ VT++ L E F+ G + C+ + +S YG+V+Y + A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 105 LNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN + G+ I+V ++ S R+ SG N+F+ +L + L FS F +
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRK--SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
V D +G+S+G+GFV + E AQ AI+ LNG L ++Q+
Sbjct: 164 VAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 46/133 (34%), Positives = 66/133 (49%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE-------------- 127
K K +GFV++ + AA A+ LNG+ + V A S+RE
Sbjct: 262 KSKG-FGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEA 320
Query: 128 -DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
D S N++V +L VTD L F+ F T + +VM D +G SRG GFV+F E+
Sbjct: 321 ADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEE 379
Query: 187 AQSAINDLNGKWL 199
A AI ++NGK +
Sbjct: 380 ATRAITEMNGKMI 392
Score = 138 (53.6 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFV 179
A A++ G +++VGDL VTD+ LF F+ RV D T RS G+G+V
Sbjct: 32 AAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYV 91
Query: 180 SFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
++ +DA A+N+LN L R IR ++ +
Sbjct: 92 NYATPQDASRALNELNFMALNGRAIRVMYSVR 123
Score = 113 (44.8 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 244 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFG 298
E+S ++A + + Q + +YV NL VT L HF GTI +V RD +G G
Sbjct: 314 EQSLKEAADKS-QGSNLYVKNLDESVTDDKLREHFAPF--GTITSCKVMRDPSGVSRGSG 370
Query: 299 FVRYSTHPEAALAIQMGNARILCGKPI 325
FV +ST EA AI N +++ KP+
Sbjct: 371 FVAFSTPEEATRAITEMNGKMIVTKPL 397
Score = 86 (35.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 245 KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGF 299
K D ++T VYV NLS ++ +L++ F V T + RD KGFGF
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTT--SCVIMRDGEGKSKGFGF 268
Query: 300 VRYSTHPEAALAIQMGNAR 318
V + +AA A+ N +
Sbjct: 269 VNFENSDDAARAVDALNGK 287
Score = 74 (31.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
+++ NL + LH F A G I +V D KG+GFV+Y T A AI
Sbjct: 135 IFIKNLDKSIDHKALHETFSAF--GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 315 GNARILCGKPI 325
N +L K +
Sbjct: 193 LNGMLLNDKQV 203
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 267 (99.0 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 62/193 (32%), Positives = 107/193 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
+VYVG + +V+ LL E+F GP+ + KD+ YGFV++ A AI
Sbjct: 14 AVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGIS 235
++ ++ N +S
Sbjct: 190 AAERLLAAQNPLS 202
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 224 (83.9 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 46 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 105
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 106 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 165
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 166 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 223
Score = 173 (66.0 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
Identities = 50/174 (28%), Positives = 87/174 (50%)
Query: 79 LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNV 135
+I + Y +V++ A A+ T+N I G+P+++ W SQR+ + SG N+
Sbjct: 1 MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNI 56
Query: 136 FVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195
F+ +L + + L+ FS F +V+ D+ G S+G+GFV F QE A+ AI +N
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMN 114
Query: 196 GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNED 249
G L +R++ + + S E+++ E TN F ED ++ +D
Sbjct: 115 GMLLNDRKV---FVGR-FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 164
Score = 165 (63.1 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 147 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 266
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 267 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 318
Score = 98 (39.6 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 247 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 304
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 305 VTEMNGRIVATKPL 318
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 224 (83.9 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 64/213 (30%), Positives = 104/213 (48%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAA 99
A S+YVG ++P V A L E+FS G + C+ + K Y +V+Y
Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGE 107
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVF 156
AI LN I G+P ++ W SQR+ + SG N+F+ +L P + + L FS F
Sbjct: 108 KAIEELNYNPIEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAF 163
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
+V D+ G+S+ FGFV + E A++AI ++NG L +R++ + K +
Sbjct: 164 GKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKK 219
Query: 217 DEKQSSDSKSVVELTN----GISVLFAEDGQEK 245
D ++S + TN I + ++E+ EK
Sbjct: 220 D-RESKFEEMKANFTNIYVKNIDLNYSEESFEK 251
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 61/252 (24%), Positives = 117/252 (46%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS+ G + CK+ + +GFV Y +A AI +
Sbjct: 141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 106 NGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + RE + +F N++V ++ ++ + FS F +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-K 219
+ DQ G+S+GFGFV+F + E A A+ +LN K + ++I A K +E K
Sbjct: 261 SIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELK 319
Query: 220 QSSDSKSVVELTN--GISVLFAEDGQEK-SNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276
+ ++ + +L G++ LF ++ + +E E + T+ + V +
Sbjct: 320 KQYEAVRLEKLAKYQGVN-LFVKNLDDTIDSEKLEEEFKPFGTITSAKVM--VDEAGKSK 376
Query: 277 HFHALCVGTIED 288
F +C T E+
Sbjct: 377 GFGFVCFTTPEE 388
Score = 148 (57.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 44/138 (31%), Positives = 67/138 (48%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF------- 133
K K +GFV++ D SA A+ LN + I GQ I V A +R E+ +
Sbjct: 271 KSKG-FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEK 329
Query: 134 -------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
N+FV +L + L F F T + A+VM D+ G+S+GFGFV F E+
Sbjct: 330 LAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEE 388
Query: 187 AQSAINDLNGKWLGNRQI 204
A AI ++N + + + +
Sbjct: 389 ATKAITEMNTRMINGKPL 406
Score = 99 (39.9 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAAL 310
Q ++V NL + S L F GTI +V D KGFGFV ++T EA
Sbjct: 334 QGVNLFVKNLDDTIDSEKLEEEFKPF--GTITSAKVMVDEAGKSKGFGFVCFTTPEEATK 391
Query: 311 AIQMGNARILCGKPI 325
AI N R++ GKP+
Sbjct: 392 AITEMNTRMINGKPL 406
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 264 (98.0 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 66/228 (28%), Positives = 118/228 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
++YVG + +V+ ++L E+ GP+ + K + +GFV++ A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-R 163
LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G E+ +
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKG-ERHGTA 190
Query: 224 SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTS 271
++ ++ N LF +D + D P P T + + + + + +
Sbjct: 191 AERMLAAQNP---LFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAA 235
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 264 (98.0 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 66/228 (28%), Positives = 118/228 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
++YVG + +V+ ++L E+ GP+ + K + +GFV++ A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-R 163
LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G E+ +
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKG-ERHGTA 190
Query: 224 SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTS 271
++ ++ N LF +D + D P P T + + + + + +
Sbjct: 191 AERMLAAQNP---LFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAA 235
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 225 (84.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 62/200 (31%), Positives = 100/200 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L + FS G + C+ +I + Y ++++ A A+ T
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG N+F+ ++ + + L+ FS F
Sbjct: 72 MNYEVIKGRPIRIMW----SQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFK----SRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAED 241
VE TN F ED
Sbjct: 182 EMGAKAVEFTNVYIKNFGED 201
Score = 209 (78.6 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 68/260 (26%), Positives = 121/260 (46%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G F NV++ + ++ L
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F+ F VM D++ GRSRGFGFV+F N DA+ A+ ++NGK L R + A K
Sbjct: 211 FTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKR 269
Query: 213 AT-SGDEKQSSDS--KSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEV 269
G+ K+ + + ++ G+++ +E + Y T+ S++V
Sbjct: 270 LERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTI----TSAKV 325
Query: 270 TSVDLH-RHFHALCVGTIED 288
+ H R F +C + E+
Sbjct: 326 MTDGGHSRGFGFVCFSSPEE 345
Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 46/174 (26%), Positives = 87/174 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLI-KKDKS-SYGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+ +F+ G L C + ++ +S +GFV++ + A A+ +
Sbjct: 192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
F+ + T + A+VM D G SRGFGFV F + E+A A+ ++NG+ + + +
Sbjct: 312 KEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 95 (38.5 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V D +GFGFV +S+ EA A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFAPY--GTITSAKVMTDGGHSRGFGFVCFSSPEEATKA 349
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 350 VTEMNGRIVSTKPL 363
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 244 (91.0 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 66/208 (31%), Positives = 109/208 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S E+++
Sbjct: 128 CKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNED 249
E TN F ED ++ +D
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKD 209
Score = 224 (83.9 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 64 (27.6 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYS 303
Q +YV NL + L + F GTI +V R KGFGFV +S
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFS 341
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 246 (91.7 bits), Expect = 7.6e-21, P = 7.6e-21
Identities = 61/163 (37%), Positives = 93/163 (57%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP+VT A+L E FS GP+ +L I + Y +V+Y A A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+K G +G+GFV F+ QE A+ AI+ +NG +L R+I
Sbjct: 119 CKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
Score = 126 (49.4 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL PEVT+A L+ FS R+ D+ T RS G+ +V+++ DA+ A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 194 LNGKWLGNRQIRCNWAAK 211
LN + R +R W+ +
Sbjct: 63 LNFDVIKGRPVRIMWSQR 80
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 244 (91.0 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 60/163 (36%), Positives = 93/163 (57%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP+VT A+L E FS GP+ ++ I + Y +V+Y A A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+K G +G+GFV F+ QE A+ AI+ +NG +L R+I
Sbjct: 119 CKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL PEVT+A L+ FS R+ D+ T RS G+ +V+++ DA+ A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 194 LNGKWLGNRQIRCNWAAK 211
LN + R +R W+ +
Sbjct: 63 LNFDVIKGRPVRIMWSQR 80
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 244 (91.0 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 60/163 (36%), Positives = 93/163 (57%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP+VT A+L E FS GP+ ++ I + Y +V+Y A A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+K G +G+GFV F+ QE A+ AI+ +NG +L R+I
Sbjct: 119 CKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL PEVT+A L+ FS R+ D+ T RS G+ +V+++ DA+ A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 194 LNGKWLGNRQIRCNWAAK 211
LN + R +R W+ +
Sbjct: 63 LNFDVIKGRPVRIMWSQR 80
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 220 (82.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 63/202 (31%), Positives = 105/202 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT LL F++ GP+ C+ LI YG+V++ A A+ T
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+ I++ W+ + SG NVF+ +L + + TL+ FS F ++V
Sbjct: 71 MNFDLIKGKSIRLMWSQRDACLRK-SGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
M D++ G S+G+GFV +++Q A AI ++NGK L + + + A+ + D +
Sbjct: 130 MTDEE-G-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTL---FVARFKSRKDREAELRE 184
Query: 225 KSVVELTNGISVLFAEDGQEKS 246
K E TN F +D ++S
Sbjct: 185 KPA-EFTNVYIKNFGDDMDDES 205
Score = 192 (72.6 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 51/170 (30%), Positives = 89/170 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
+V++ N+ + N L E FS G + K++ ++ S YGFV Y D+R+A AI +N
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMN 158
Query: 107 GR-----HIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
G+ +F K + RE + NV++ + ++ D +L + FS +
Sbjct: 159 GKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLS 218
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+VM D +G+S+ FGFVSF + + A++A+ D+NG+ + + I A K
Sbjct: 219 VKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQK 267
Score = 167 (63.8 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 52/174 (29%), Positives = 87/174 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+ VFS G K++K KS +GFV + ++A A+ +
Sbjct: 191 NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDM 250
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHFN--------------VFVGDLSPEVTDATLF 150
NGR I GQ I V A +R+ + F +++ +L + D TL
Sbjct: 251 NGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FSVF + +VM Q+ G+S+GFG + F + E A A+ ++NG+ LG++ +
Sbjct: 311 KEFSVFGSICRVKVM--QEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPL 362
Score = 78 (32.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I V+V ++ KGFG + + + AA A
Sbjct: 291 QAAKLYIKNLDDTIDDETLRKEFSVF--GSICRVKVMQEAGQSKGFGLICFFSPEAAAKA 348
Query: 312 IQMGNARILCGKPI 325
+ N RIL KP+
Sbjct: 349 MAEMNGRILGSKPL 362
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 243 (90.6 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 53/123 (43%), Positives = 76/123 (61%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVF 156
+ F
Sbjct: 127 APF 129
Score = 125 (49.1 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 260 VYVGNLSSEVTSVDLHRHF 278
V+VG+LS E+T+ D+ F
Sbjct: 108 VFVGDLSPEITTEDIKAAF 126
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 243 (90.6 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 60/163 (36%), Positives = 93/163 (57%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP+VT A+L E FS GP+ ++ I + Y +V+Y A A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+K G +G+GFV F+ QE A+ AI+ +NG +L R+I
Sbjct: 119 CKVACDEK-G-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL PEVT+A L+ FS R+ D+ T RS G+ +V+++ DA+ A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 194 LNGKWLGNRQIRCNWAAK 211
LN + R +R W+ +
Sbjct: 63 LNFDVIKGRPVRIMWSQR 80
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 242 (90.2 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 61/164 (37%), Positives = 95/164 (57%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIV 103
S+YVG++HP+VT ++L E FS GP+ +L + DK + Y +V+Y A A+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCR-DKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCS 160
T+N I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 62 TMNFDVINGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+K G +G+GFV F+ QE A+ AI+ LNG +L R+I
Sbjct: 118 SCKVACDEK-G-PKGYGFVHFQKQESAERAIDALNGMFLNYRKI 159
Score = 124 (48.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL PEVT++ L+ FS R+ D+ T RS G+ +V+++ DA+ A+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + R +R W+ +
Sbjct: 63 MNFDVINGRPVRIMWSQR 80
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 231 (86.4 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 53/173 (30%), Positives = 96/173 (55%)
Query: 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFD 94
PP S S+Y+G++HP V+ A+L E FS GP+ ++ + + S Y +V++
Sbjct: 49 PPNATYSMA-SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQ 107
Query: 95 RRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS---GHFNVFVGDLSPEVTDATLFA 151
A A+ T+N I G+P+++ W SQR+ + G+ N+F+ +L + + +++
Sbjct: 108 PADAERALDTMNFEVIHGRPMRIMW----SQRDPAARRAGNGNIFIKNLDRVIDNKSVYD 163
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS+F +V D + G S+G+GFV F + AQ+AI +NG L ++++
Sbjct: 164 TFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
Score = 207 (77.9 bits), Expect = 9.8e-14, P = 9.8e-14
Identities = 76/290 (26%), Positives = 134/290 (46%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+ + N + + FS G + CK+ D+ + YGFV + SA AI +
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V +QR G + NVFV + + L A FS F +
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEIT 265
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR---CNWAAKGATSGD 217
A VM D + G+ +GFGFV+F +Q+ A A+ LN L + C K S +
Sbjct: 266 SAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAE 324
Query: 218 EKQSSDS--KSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
K+ ++ + V+ G++ L+ ++ +E N+D ++ +++ G ++S VD +
Sbjct: 325 LKRKYEALKQERVQRYQGVN-LYVKNIEEDLNDDGLRDH--FSSF--GTITSAKVMVDEN 379
Query: 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
G R KGFGFV + EA A+ N++++ KP+
Sbjct: 380 --------G--------RSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
Score = 121 (47.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++++GDL P+V++A LF FS+ RV D + S G+ +V+F+ DA+ A++
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + R +R W+ +
Sbjct: 118 MNFEVIHGRPMRIMWSQR 135
Score = 75 (31.5 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 26/82 (31%), Positives = 34/82 (41%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHP 306
E+ +YT V+V N + L F G I V D KGFGFV ++
Sbjct: 232 ESGLKYTNVFVKNFGEHLDQEKLSAMFSKF--GEITSAVVMTDAQGKPKGFGFVAFADQD 289
Query: 307 EAALAIQMGNARILCGKPIKCS 328
A A++ N IL G K S
Sbjct: 290 AAGQAVEKLNDSILEGTDCKLS 311
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 218 (81.8 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 138
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 127 (49.8 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 325 NGYRLGDRVLQVSF 338
Score = 117 (46.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 72 (30.4 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 265 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 322
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 323 SLNGYRLGDRVLQVSF 338
Score = 65 (27.9 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 210 (79.0 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
Identities = 61/205 (29%), Positives = 102/205 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT LL FS+ GP+ ++ + + Y +V++ A A+ T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+ I++ W+ + SG NVF+ +L + + TL+ FS F ++V
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
M D + G S+G+ FV F+NQ A AI ++NGK L ++ + + D + S
Sbjct: 130 MSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV---FVGRFKNRKDREAELRS 184
Query: 225 KSVVELTNGISVLFAEDGQEKSNED 249
K+ E TN F D ++ +D
Sbjct: 185 KAS-EFTNVYIKNFGGDMDDERLKD 208
Score = 182 (69.1 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 50/170 (29%), Positives = 87/170 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
+V++ N+ + N L E FS+ G + K++ D+ S Y FV + ++ +A AI +N
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
Query: 107 GRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSD 161
G+ + G + V RE + F NV++ + ++ D L FS +
Sbjct: 159 GKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS 218
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+VM D +G+S+GFGFVSF + E A+ A+ ++NG+ + + I A K
Sbjct: 219 VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Score = 171 (65.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 56/182 (30%), Positives = 89/182 (48%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKSS-YGFVDYFDRRS 97
R AS +VY+ N + + L++VFS G K++ KS +GFV + +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 98 AALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGHFNV--FVGDLSP 142
A A+ +NGR I GQ I V A + +RE G V ++ +L
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 143 EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202
+ D L FS F + S +VM Q+ G+S+GFG + F + EDA A+ ++NG+ LG++
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSK 360
Query: 203 QI 204
+
Sbjct: 361 PL 362
Score = 85 (35.0 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALA 311
Q +Y+ NL + L F + G+I V+V ++ KGFG + +S+ +A A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSF--GSISRVKVMQEEGQSKGFGLICFSSPEDATKA 348
Query: 312 IQMGNARILCGKPI 325
+ N RIL KP+
Sbjct: 349 MTEMNGRILGSKPL 362
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 218 (81.8 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 138
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 127 (49.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 117 (46.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 72 (30.4 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 336 SLNGYRLGDRVLQVSF 351
Score = 65 (27.9 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 218 (81.8 bits), Expect = 9.4e-20, Sum P(2) = 9.4e-20
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 138
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 51/185 (27%), Positives = 87/185 (47%)
Query: 34 LSGNLPPRFDASTCRSVYVGNIHPQVTN-ALLQEVFSST-----GPL-EGCKLIKKDK-- 84
L+G PP A+ +V N Q TN A+L +++ S GPL + + + D
Sbjct: 186 LNGQKPP--GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLL 243
Query: 85 -SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPE 143
+YG F + + +L G +I G P W +FV +L+P+
Sbjct: 244 NMAYGVKSRFSPMTID-GMTSLAGINIPGHP-GTGWC--------------IFVYNLAPD 287
Query: 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI LNG LG+R
Sbjct: 288 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 347
Query: 204 IRCNW 208
++ ++
Sbjct: 348 LQVSF 352
Score = 117 (46.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 72 (30.4 bits), Expect = 9.4e-20, Sum P(2) = 9.4e-20
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 279 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 336
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 337 SLNGYRLGDRVLQVSF 352
Score = 47 (21.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 220 (82.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 62/171 (36%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
PI SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 56 PIDSGNTE---DSKT--NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 109
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 110 YGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 166
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 117 (46.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 59 SGNTEDSKT--NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 116
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 149
Score = 72 (30.4 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 364
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 365 SLNGYRLGDRVLQVSF 380
Score = 47 (21.6 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 217 (81.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 63/172 (36%), Positives = 92/172 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS---- 86
P+ SGN D+ T + N PQ +T L+ +F S G +E CKL++ DK +
Sbjct: 28 PVDSGNTE---DSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSL 80
Query: 87 -YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVT 145
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMT 137
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 127 (49.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 72 (30.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 336 SLNGYRLGDRVLQVSF 351
Score = 65 (27.9 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 217 (81.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 63/172 (36%), Positives = 92/172 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS---- 86
P+ SGN D+ T + N PQ +T L+ +F S G +E CKL++ DK +
Sbjct: 28 PVDSGNTE---DSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSL 80
Query: 87 -YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVT 145
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMT 137
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 127 (49.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 72 (30.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 336 SLNGYRLGDRVLQVSF 351
Score = 65 (27.9 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 214 (80.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 49/159 (30%), Positives = 88/159 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK-KDKSS--YGFVDYFDRRSAALAIVTL 105
S+Y G++ P+VT A L ++F + ++ + +++ S Y ++++ + A A+ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165
N +F +PI++ + SG N+F+ +L + + LF FS F T +V
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
D TGRS+G+GFV F +E AQ+AI+ LNG + ++Q+
Sbjct: 169 MDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Score = 194 (73.4 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 63/194 (32%), Positives = 92/194 (47%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGF 89
I+ N P S ++++ N+ + N L E FSS G + CK+ + YGF
Sbjct: 121 IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGF 180
Query: 90 VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---EDT-SGHF-NVFVGDLSPEV 144
V + SA AI LNG + + + V +R E+T + F NV+V +L E+
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ L F F S A VM DQ +G SR FGFV+F E A SA+ +NG LG+ +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL 299
Query: 205 RCNWAAKGATSGDE 218
A K + +E
Sbjct: 300 YVGRAQKKSEREEE 313
Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 39/133 (29%), Positives = 69/133 (51%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SG 131
+GFV++ +AA A+ +NG + + V A S+RE+ S
Sbjct: 271 FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQ 330
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
N+++ +L V D L FS + + ++VM + + G SRGFGFV++ N E+A A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389
Query: 192 NDLNGKWLGNRQI 204
+++NGK +G + +
Sbjct: 390 SEMNGKMIGRKPL 402
Score = 117 (46.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
+ T + +++ GDL P+VT+A LF F RV DQ RS G+ +++F N D
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPND 101
Query: 187 AQSAINDLNGKWLGNRQIR 205
A A+ LN L +R IR
Sbjct: 102 AYRAMEALNYTPLFDRPIR 120
Score = 89 (36.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 243 QEKS-NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG----- 296
QE++ +E+ P P++T VYV NL E+ +L + F G I V RD+
Sbjct: 215 QERARDENTP--TPRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGNSRC 270
Query: 297 FGFVRYSTHPEAALAIQMGN 316
FGFV + AA A++ N
Sbjct: 271 FGFVNFECTEAAASAVEKMN 290
Score = 69 (29.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFV 300
SN D +++ NL + + + L F + GTI +V D KG+GFV
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSF--GTILSCKVAMDVTGRSKGYGFV 181
Query: 301 RYSTHPEAALAIQMGNARILCGKPI 325
++ A AI N ++ K +
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQV 206
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 235 (87.8 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 58/163 (35%), Positives = 90/163 (55%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ LI S+Y +V++ + A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+FV +L + + L+ S F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
V+ D+ G S+G+GFV F E A+ AI +NG L R++
Sbjct: 128 CNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 207 (77.9 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 51/165 (30%), Positives = 84/165 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + N L + S+ G + C ++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + G+ + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 116 (45.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 75 (31.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMG 315
++V NL + + L+ A G I V D KG+GFV + TH A AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAF--GNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKM 158
Query: 316 NARILCGKPI 325
N +L G+ +
Sbjct: 159 NGMLLNGRKV 168
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 206 (77.6 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 20 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 79
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D L
Sbjct: 80 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 139
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 140 FSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 197
Score = 177 (67.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 51/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 241 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 292
Score = 143 (55.4 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 46/151 (30%), Positives = 74/151 (49%)
Query: 110 IFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW 166
I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F +V+
Sbjct: 6 IKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 61
Query: 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKS 226
D+ G S+G+ FV F QE A AI +NG L +R++ + + S E+++
Sbjct: 62 DEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV---FVGR-FKSRKEREAELGAK 115
Query: 227 VVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
E TN V G+E +E+ E Q+
Sbjct: 116 AKEFTN---VYIKNFGEEVDDENLRELFSQF 143
Score = 124 (48.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 52/182 (28%), Positives = 79/182 (43%)
Query: 163 RVMWDQKTG--RSRGFGFVSFRNQEDA--QSAINDLNGKWLGNR---QIRCNW-AAKG-A 213
R+MW Q+ R G G V +N + + A+ D + GN ++ C+ +KG A
Sbjct: 12 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYA 70
Query: 214 TSGDEKQSSDSKSVVE----LTNGISVLFAEDGQEKSNE-DAPENNPQYTTVYVGNLSSE 268
E Q + +K++ + L N V K E + ++T VY+ N E
Sbjct: 71 FVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 130
Query: 269 VTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 323
V +L F G V+V RD KGFGFV Y H +A A++ N + + GK
Sbjct: 131 VDDENLRELFSQF--GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 188
Query: 324 PI 325
I
Sbjct: 189 SI 190
Score = 94 (38.1 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 221 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 278
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 279 VTEMNGRIVGSKPL 292
Score = 38 (18.4 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 479 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 509
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 210 (79.0 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 61/205 (29%), Positives = 102/205 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT LL FS+ GP+ ++ + + Y +V++ A A+ T
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+ I++ W+ + SG NVF+ +L + + TL+ FS F ++V
Sbjct: 129 MNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
M D + G S+G+ FV F+NQ A AI ++NGK L ++ + + D + S
Sbjct: 188 MSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV---FVGRFKNRKDREAELRS 242
Query: 225 KSVVELTNGISVLFAEDGQEKSNED 249
K+ E TN F D ++ +D
Sbjct: 243 KAS-EFTNVYIKNFGGDMDDERLKD 266
Score = 182 (69.1 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 50/170 (29%), Positives = 87/170 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
+V++ N+ + N L E FS+ G + K++ D+ S Y FV + ++ +A AI +N
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 216
Query: 107 GRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSD 161
G+ + G + V RE + F NV++ + ++ D L FS +
Sbjct: 217 GKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS 276
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+VM D +G+S+GFGFVSF + E A+ A+ ++NG+ + + I A K
Sbjct: 277 VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 171 (65.3 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 56/182 (30%), Positives = 89/182 (48%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKSS-YGFVDYFDRRS 97
R AS +VY+ N + + L++VFS G K++ KS +GFV + +
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 98 AALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGHFNV--FVGDLSP 142
A A+ +NGR I GQ I V A + +RE G V ++ +L
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 143 EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202
+ D L FS F + S +VM Q+ G+S+GFG + F + EDA A+ ++NG+ LG++
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSK 418
Query: 203 QI 204
+
Sbjct: 419 PL 420
Score = 85 (35.0 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALA 311
Q +Y+ NL + L F + G+I V+V ++ KGFG + +S+ +A A
Sbjct: 349 QGVKLYIKNLDDTIDDEKLRNEFSSF--GSISRVKVMQEEGQSKGFGLICFSSPEDATKA 406
Query: 312 IQMGNARILCGKPI 325
+ N RIL KP+
Sbjct: 407 MTEMNGRILGSKPL 420
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 218 (81.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 56 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 109
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 166
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 127 (49.8 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 366 NGYRLGDRVLQVSF 379
Score = 117 (46.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 59 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 149
Score = 72 (30.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 306 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 363
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 364 SLNGYRLGDRVLQVSF 379
Score = 65 (27.9 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 213
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 214 LNGQKPPGATEPITVKFANNPSQK 237
Score = 47 (21.6 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 218 (81.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 57 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 110
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 111 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 167
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 168 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 127 (49.8 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 117 (46.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 60 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 150
Score = 72 (30.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 364
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 365 SLNGYRLGDRVLQVSF 380
Score = 65 (27.9 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQK 238
Score = 47 (21.6 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 219 (82.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 59/184 (32%), Positives = 97/184 (52%)
Query: 26 AAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPL---EGCK-LIK 81
AA P SG +T S+YVG++ VT++ L + F G + C+ L+
Sbjct: 16 AAVTSAPATSGGATATQFGNT--SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVT 73
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDL 140
+ YG+V++ + + AA AI LN ++G+PI+V +++ S R +G N+F+ +L
Sbjct: 74 RRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG--NIFIKNL 131
Query: 141 SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200
+ L FS F +V D +G+S+G+GFV + N+E AQ AI LNG L
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLN 190
Query: 201 NRQI 204
++Q+
Sbjct: 191 DKQV 194
Score = 207 (77.9 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 58/196 (29%), Positives = 95/196 (48%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YG 88
++ + P S ++++ N+ + + L + FSS G + CK + D S YG
Sbjct: 109 VMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYG 167
Query: 89 FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH--F-NVFVGDLSPEVT 145
FV Y + SA AI LNG + + + V +R+ T+ F NV+V +L+ T
Sbjct: 168 FVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTT 227
Query: 146 DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
D L F + + A VM D + G+S+GFGFV+F N +DA A+ LNG +++
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE-- 284
Query: 206 CNWAAKGATSGDEKQS 221
W A E+++
Sbjct: 285 --WYVGRAQKKSERET 298
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/138 (31%), Positives = 71/138 (51%)
Query: 82 KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE------------DT 129
K K +GFV++ + AA A+ +LNG + V A S+RE +
Sbjct: 253 KSKG-FGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEA 311
Query: 130 SGHF---NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
+ F N++V +L P ++D L FS F T + ++VM D G S+G GFV+F E+
Sbjct: 312 ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEE 370
Query: 187 AQSAINDLNGKWLGNRQI 204
A A++ L+GK + ++ +
Sbjct: 371 ATEAMSQLSGKMIESKPL 388
Score = 140 (54.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 41/108 (37%), Positives = 56/108 (51%)
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQREDTS--GHFNVFVGDLSPEVTDATLFACFSVFP 157
+A V L G+ G V A A+S + G+ +++VGDL VTD+ LF F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 158 TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
T RV D T RS G+G+V+F N +DA AI +LN L + IR
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIR 108
Score = 81 (33.6 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAAL 310
Q + +YV NL ++ L F GT+ +V RD KG GFV ++T EA
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 373
Query: 311 AIQMGNARILCGKPI 325
A+ + +++ KP+
Sbjct: 374 AMSQLSGKMIESKPL 388
Score = 73 (30.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
+++ NL + LH F + G I +V D KG+GFV+Y+ A AI+
Sbjct: 126 IFIKNLDESIDHKALHDTFSSF--GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEK 183
Query: 315 GNARILCGKPI 325
N +L K +
Sbjct: 184 LNGMLLNDKQV 194
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 179 (68.1 bits), Expect = 2.8e-19, Sum P(3) = 2.8e-19
Identities = 37/102 (36%), Positives = 61/102 (59%)
Query: 111 FGQPIKVNWAYASSQRED--TSGHFNVFVGDLSPEVTDATLFACFSV-FPTCSDARVMWD 167
F + ++NWA ++ + ++ F++FVGDLSP T+A L + F F + RVM D
Sbjct: 168 FKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTD 227
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
TG SR FGFV F ++++ + A+ +++GKW R +R +A
Sbjct: 228 PLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYA 269
Score = 112 (44.5 bits), Expect = 2.8e-19, Sum P(3) = 2.8e-19
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 247 NEDAPEN----NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRY 302
N+ P N +P TTV+VG L + T L F G I +VR+ K GFV++
Sbjct: 345 NDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPF--GPILNVRIPNGKNCGFVKF 402
Query: 303 STHPEAALAIQMGNARILCGKPIKCSW 329
+A +IQ I+ G PI+ SW
Sbjct: 403 EKRIDAEASIQGLQGFIVGGSPIRLSW 429
Score = 106 (42.4 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 33/134 (24%), Positives = 59/134 (44%)
Query: 115 IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSR 174
++VN + S+ + VFVG L P+ T+ L + F F + R+ G++
Sbjct: 342 MRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI----PNGKN- 396
Query: 175 GFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGI 234
GFV F + DA+++I L G +G IR +W +++ + S +NG+
Sbjct: 397 -CGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGL 455
Query: 235 SVLFAEDGQEKSNE 248
A + S +
Sbjct: 456 RAPSAASSVDNSKQ 469
Score = 65 (27.9 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SS--YGFVDYFDRRSAALAIV 103
S++VG++ P T A L +F + + D SS +GFV + D A++
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 104 TLNGRHIFGQPIKVNWAYAS 123
++G+ G+ ++V AYA+
Sbjct: 253 EMSGKWFQGRALRV--AYAT 270
Score = 53 (23.7 bits), Expect = 2.8e-19, Sum P(3) = 2.8e-19
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 38 LPPRFDASTC----RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS 85
LPP T R++++G++ P A ++E++S KLI+ K+
Sbjct: 20 LPPSSTVETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKN 71
Score = 48 (22.0 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 175 GFGFVSFRNQEDAQSAINDLNGKWLGN 201
G+ FV F Q+DA+ A++ LN L N
Sbjct: 129 GYCFVEFETQKDAKFALS-LNATPLPN 154
Score = 40 (19.1 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 22 PSLLAAPQIEP---ILSGNLPPRFDASTCRSVY 51
PS EP + G+L P FD +T ++
Sbjct: 22 PSSTVETSTEPPRTLWMGDLDPSFDEATIEEIW 54
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 218 (81.8 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 57 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 110
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 111 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 167
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 168 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 51/182 (28%), Positives = 85/182 (46%)
Query: 34 LSGNLPPRFDASTCRSVYVGNIHPQVTN-ALLQEVFSST-----GPL-EGCKLIKKDK-- 84
L+G PP A+ +V N Q TN A+L +++ S GPL + + + D
Sbjct: 215 LNGQKPP--GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLL 272
Query: 85 -SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPE 143
+YG F + + +L G +I G P W +FV +L+P+
Sbjct: 273 NMAYGVKSRFSPMTID-GMTSLAGINIPGHP-GTGWC--------------IFVYNLAPD 316
Query: 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI LNG LG+R
Sbjct: 317 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 376
Query: 204 IR 205
++
Sbjct: 377 LQ 378
Score = 117 (46.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 60 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 150
Score = 70 (29.7 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 312
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Score = 47 (21.6 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 207 (77.9 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 55/179 (30%), Positives = 89/179 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 131 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 190
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G F NV++ + EV D +L
Sbjct: 191 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 250
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS F +VM D +G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 251 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 308
Score = 180 (68.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 232 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 292 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 351
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 352 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 403
Score = 153 (58.9 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 50/164 (30%), Positives = 80/164 (48%)
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF 153
+A A+ T+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ F
Sbjct: 104 TAERALDTMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 159
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
S F +V+ D+ G S+G+ FV F QE A AI +NG L +R++ + +
Sbjct: 160 SAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGR-F 213
Query: 214 TSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
S E+++ E TN V G+E +E E Q+
Sbjct: 214 KSRKEREAELGAKAKEFTN---VYIKNFGEEVDDESLKELFSQF 254
Score = 94 (38.1 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 332 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 389
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 390 VTEMNGRIVGSKPL 403
Score = 38 (18.4 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 367 ALSKIAGAQALMHPQAQHALKLGMGAAGASQ 397
A+ + Q +H Q Q L M AA Q
Sbjct: 591 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 621
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 201 (75.8 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 50/163 (30%), Positives = 85/163 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVT 104
S+YVG++ P+V+ L E+F+ G + ++ + + SY +V+Y++ A A+ T
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+ ++ W SQR+ + SG NVF+ +L + L+ FS F
Sbjct: 71 LNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V+ D S+GFGFV + QE A AI +NG + +++
Sbjct: 127 CKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV 168
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 55/177 (31%), Positives = 89/177 (50%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRR 96
P S +V++ N+ + + L + FS+ G + CK++ D +S +GFV Y +
Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQE 149
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF-NVFVGDLSPEVTDATLFACFS 154
SA AI +NG I GQ + V +S +R + T F NVF +LS +V L
Sbjct: 150 SADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ 209
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ ++ +M D K G+S+GFGF +F + E A++ + + NGK + I A K
Sbjct: 210 QYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265
Score = 162 (62.1 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 43/167 (25%), Positives = 78/167 (46%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+V+ N+ V L+E+ G + ++ DK +GF ++ +A +
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENE 248
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH-F-------NVFVGDLSPEVTDATLFACFSVFP 157
NG+ G+PI A +RE H F N+++ ++ + + L FS F
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 158 TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
T + A VM D K S+GFGFV + ++A A+ ++NG+ +G + +
Sbjct: 309 TITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPL 355
Score = 123 (48.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL PEV++ LF F+ S+ RV D T RS + +V++ N DA+ A++
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 194 LNGKWLGNRQIRCNWAAK 211
LN + + R W+ +
Sbjct: 71 LNNTPIRGKACRIMWSQR 88
Score = 98 (39.6 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 37/131 (28%), Positives = 58/131 (44%)
Query: 210 AKGATSGDEKQSSDSKSVVELTNGI----SVLFAEDGQEKSNEDAP-----ENNPQYTTV 260
+KG + + + +K+VVE NG ++A Q+K +A E Q +
Sbjct: 227 SKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNL 286
Query: 261 YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQM 314
Y+ N+ + + L F GTI V +D KGFGFV Y+ EA A+
Sbjct: 287 YIKNIDDSIDNDKLREVFSQF--GTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344
Query: 315 GNARILCGKPI 325
N R++ KP+
Sbjct: 345 MNGRMIGTKPL 355
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 208 (78.3 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 54/187 (28%), Positives = 88/187 (47%)
Query: 22 PSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG---CK 78
P AP++ + P S+YVG + P VT A+L E+FSS G + C+
Sbjct: 19 PDNAPAPEVTAV---EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 79 -LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
+ + Y +V+Y D A+ LN I G+P ++ W+ T G NVF+
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFI 134
Query: 138 GDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
+L + + L F+ F +V D+ G S+G+GFV + E A +AI +NG
Sbjct: 135 KNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGM 193
Query: 198 WLGNRQI 204
L ++++
Sbjct: 194 LLNDKKV 200
Score = 192 (72.6 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 48/171 (28%), Positives = 87/171 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F N+++ ++ PEV D F F +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
A + D + G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Score = 116 (45.9 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ + + A+++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 194 LNGKWLGNRQIRCNWAAK 211
LN + + R W+ +
Sbjct: 103 LNYTLIKGKPCRIMWSQR 120
Score = 106 (42.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 35/137 (25%), Positives = 66/137 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKS-SYGFVDYFDRRSAALAIVTL 105
++Y+ NI P+V + +++F G + L + + KS +GFV++ SA A+ +
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
N + + Q + V A Y +++ E S + N++V +L+ +V D L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 151 ACFSVFPTCSDARVMWD 167
F + T + A+VM D
Sbjct: 344 ELFGPYGTITSAKVMRD 360
Score = 92 (37.4 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHP 306
E +T +Y+ N+ EV + + F G I + RD +GFGFV +STH
Sbjct: 217 EMKANFTNIYIKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 307 EAALAIQMGN 316
A A++ N
Sbjct: 275 SAQAAVEEMN 284
Score = 81 (33.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
V++ NL S + + LH F A G I +V +D KG+GFV Y T A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAF--GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKH 189
Query: 315 GNARILCGKPI 325
N +L K +
Sbjct: 190 VNGMLLNDKKV 200
Score = 75 (31.5 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 293 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
+ KGFGFV +S+ EA+ A+ N R++ GKP+
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 447
Score = 74 (31.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 171 GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
G+S+GFGFV F + ++A A+ ++N + + + +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 447
Score = 39 (18.8 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 361 AYERQIALSKI-AGAQALMH-PQAQHALKLGMGAAGASQAIYDSSGFQ 406
A + + S++ A QA + Q Q A GMG A + A++ G Q
Sbjct: 452 AQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQ 499
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 203 (76.5 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 53/170 (31%), Positives = 86/170 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
+V++ N+ + N L + FS+ G + CK++ + S Y FV + + +A AI +N
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 61
Query: 107 GRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFACFSVFPTCSD 161
G + + + V + +RE G F NV++ + EV D +L FS F
Sbjct: 62 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 121
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+VM D G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 122 VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Score = 179 (68.1 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N +V + L+E+FS G K+++ KS +GFV Y A A+ +
Sbjct: 94 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ I G+ I V A +R+ + F N+++ +L + D L
Sbjct: 154 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 213
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F + + A+VM + GRS+GFGFV F + E+A A+ ++NG+ +G++ +
Sbjct: 214 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 265
Score = 94 (38.1 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +Y+ NL + L + F G+I +V R KGFGFV +S+ EA A
Sbjct: 194 QGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 251
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 252 VTEMNGRIVGSKPL 265
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 242 (90.2 bits), Expect = 5.2e-19, P = 5.2e-19
Identities = 58/180 (32%), Positives = 98/180 (54%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK----KDKSSYGFVDYFDRRSAALAIVT 104
+VY+GN+ +V+++L+ E+ G + L K + YGFV++ A A
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+NG ++G+PI+VN A A Q+ G +FVG+L P VT+ L+ FS F +
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGA-ELFVGNLDPMVTEQVLYDTFSRFGNLVNLPK 132
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA----AKGATSGDEKQ 220
+ + S+G+GFVSF + E + +AI ++NG++L N+Q+ +A KG GD+ +
Sbjct: 133 VARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAE 192
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 207 (77.9 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 61/171 (35%), Positives = 83/171 (48%)
Query: 43 DASTCRS----VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDR 95
D+S RS ++V N+ V N L E FS G + CK+ YGFV +
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTE 184
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF---NVFVGDLSPEVTDATLFAC 152
SA AI LNG+ + + I V +RE + NV+V +LS TD L
Sbjct: 185 DSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTT 244
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
F + + S A VM D G+SR FGFV+F N EDA A+ LNGK +++
Sbjct: 245 FGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKE 294
Score = 195 (73.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 51/160 (31%), Positives = 87/160 (54%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
S+YVG++ VT++ L + F+ + ++ + ++ YG+V+Y + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
LN ++ G+ I++ ++ S SG N+FV +L V + TL FS T +V
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSAR-RSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
D G+SRG+GFV F ++ A++AI LNGK L ++QI
Sbjct: 166 ATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 145 (56.1 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 42/133 (31%), Positives = 66/133 (49%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE------------DTSGHF- 133
+GFV++ + AA A+ LNG+ + V A S+RE D F
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFD 326
Query: 134 --NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
N++V +L VTD L F+ F T + +VM D +G S+G GFV+F +A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL 385
Query: 192 NDLNGKWLGNRQI 204
N++NGK +G + +
Sbjct: 386 NEMNGKMVGGKPL 398
Score = 130 (50.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL VTD+ L+ F+ RV D T S G+G+V++ N +DA+ A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LN +L + IR ++++ +++
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSA 128
Score = 91 (37.1 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
+YV NL VT L F GTI +V RD KG GFV +S EA+ +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEF--GTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNE 387
Query: 315 GNARILCGKPI 325
N +++ GKP+
Sbjct: 388 MNGKMVGGKPL 398
Score = 91 (37.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFV 300
S+ D+ ++V NL V + LH F C GTI +V D +G+GFV
Sbjct: 122 SSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSG-C-GTIVSCKVATDHMGQSRGYGFV 179
Query: 301 RYSTHPEAALAIQMGNARILCGKPI 325
++ T A AI+ N ++L K I
Sbjct: 180 QFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 88 (36.0 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 31/108 (28%), Positives = 49/108 (45%)
Query: 221 SSDS-KSVVELTNGISV----LFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
+ DS K+ +E NG + +F K ++ + ++T VYV NLS T +L
Sbjct: 183 TEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELK 242
Query: 276 RHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 318
F G+I V RD + FGFV + +AA A++ N +
Sbjct: 243 TTFGQY--GSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 210 (79.0 bits), Expect = 7.0e-19, Sum P(3) = 7.0e-19
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 93 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 151
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 152 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 208
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 209 QVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Score = 129 (50.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 387 NGYRLGDRVLQVSF 400
Score = 111 (44.1 bits), Expect = 8.8e-07, Sum P(3) = 8.8e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 149 LNGLRLQTKTIKVSYARPSSAS 170
Score = 73 (30.8 bits), Expect = 7.0e-19, Sum P(3) = 7.0e-19
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 384
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 385 SLNGYRLGDRVLQVSF 400
Score = 67 (28.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 235 LNGQKPSGAAEPITVKFANNPSQK 258
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
Score = 37 (18.1 bits), Expect = 7.0e-19, Sum P(3) = 7.0e-19
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 52 VGNIHPQVTN 61
+ N+ PQVTN
Sbjct: 47 ISNMEPQVTN 56
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 209 (78.6 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 49 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 107
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 108 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 164
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 165 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
Score = 130 (50.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 330 NGYRLGDRVLQVSFKTNKA 348
Score = 111 (44.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 105 LNGLRLQTKTIKVSYARPSSAS 126
Score = 73 (30.8 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 327
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 328 SLNGYRLGDRVLQVSF 343
Score = 67 (28.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 191 LNGQKPSGATEPITVKFANNPSQK 214
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 228 (85.3 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ +
Sbjct: 13 YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDE 70
Query: 147 ATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I
Sbjct: 71 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 130
Query: 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNL 265
++A K + G E+ S ++ ++ N +S D + DAP P V +L
Sbjct: 131 VSYAFKKDSKG-ERHGSAAERLLAAQNPLS---QADRPHQLFADAPPP-PSAPNPVVSSL 185
Query: 266 SS 267
S
Sbjct: 186 GS 187
Score = 90 (36.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI+
Sbjct: 59 IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 314 MGNARILCGKPIKCSW 329
N + LC +PI S+
Sbjct: 118 AMNGQYLCNRPITVSY 133
Score = 84 (34.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
D+ TG+ +G+GFV F ++EDA AI +N L + IR N A+
Sbjct: 4 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS 47
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 188 (71.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 49/160 (30%), Positives = 81/160 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG++ P VT +L + F GPL ++ + + YG+V++ A A+ T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+P ++ W+ R SG N+F+ +L + + LF FS F +V
Sbjct: 79 MNFDLINGKPFRLMWSQPDD-RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ D G S+G+ +V F + A AI +NG L NRQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 182 (69.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 71/292 (24%), Positives = 128/292 (43%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA 99
R S ++++ N+ + N L +FS+ G + CK++ D S G+ +FD +AA
Sbjct: 99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAA 158
Query: 100 -LAI-----VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFAC 152
AI V LN R ++ K A+ R D + NVFV ++ ++ D L
Sbjct: 159 NRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKEL 218
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K
Sbjct: 219 FCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Query: 213 ATSGDE-KQSSDSKSVVELTN--GISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEV 269
E ++ + + E + G+ + + ++E E + ++ + EV
Sbjct: 278 IERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337
Query: 270 TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILC 321
+ F +C + E+ D+ G + + P L + +G AR C
Sbjct: 338 GQ---GKGFGVVCFSSFEEATKAVDEMNGRI-VGSKP---LHVTLGQARRRC 382
Score = 111 (44.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 195 NGKWLGNRQIRCNWA 209
N + + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 101 (40.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC-VGTIEDVRVQRD-----KG 296
+E++ E + +T V+V N+ ++ L F C G E V+V RD KG
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF---CEYGPTESVKVIRDASGKSKG 240
Query: 297 FGFVRYSTHPEAALAIQMGNARILCGK 323
FGFVRY TH A A+ + + + GK
Sbjct: 241 FGFVRYETHEAAQKAVLDLHGKSIDGK 267
Score = 88 (36.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPE 307
++ P +Y+ NL + L F + G+I +V + KGFG V +S+ E
Sbjct: 296 KSRPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEE 353
Query: 308 AALAIQMGNARILCGKPI 325
A A+ N RI+ KP+
Sbjct: 354 ATKAVDEMNGRIVGSKPL 371
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 186 (70.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 48/160 (30%), Positives = 80/160 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG++ P VT +L + F GPL ++ + + YG+V++ A A+ T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+P ++ W+ SG N+F+ +L + + LF FS F +V
Sbjct: 79 MNFDLINGKPFRLMWSQPDDHLRK-SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ D G S+G+ +V F + A AI +NG L NRQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 181 (68.8 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 52/180 (28%), Positives = 93/180 (51%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSS-YGFVDYFDRRSAA 99
D +T +V+V N + + L+++FS GP E K+I+ KS +GFV Y +A
Sbjct: 194 DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQ 253
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFN--------------VFVGDLSPEV 144
A++ L+G+ I G+ + V A +R + F +++ +L +
Sbjct: 254 KAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETI 313
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
D L FS+F + S A+VM + G+ +GFG V F + E+A A+N++NG+ +G++ +
Sbjct: 314 NDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTL 371
Score = 180 (68.4 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 51/166 (30%), Positives = 84/166 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA-LAI---- 102
++++ N+ + N L +FS+ G + CK++ D S G+ +FD +AA AI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 103 -VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS 160
V LN R ++ K A+ R D + NVFV + ++ D L FS +
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTE 226
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
+V+ D TG+S+GFGFV + E AQ A+ +L+GK + + + C
Sbjct: 227 SVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGK-VLC 270
Score = 111 (44.1 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 195 NGKWLGNRQIRCNWA 209
N + + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 103 (41.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGF 297
+E++ E + +T V+V N ++ L + F G E V+V RD KGF
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEY--GPTESVKVIRDATGKSKGF 241
Query: 298 GFVRYSTHPEAALAIQMGNARILCGKPIKC 327
GFVRY TH A A+ + + + GK + C
Sbjct: 242 GFVRYETHEAAQKAVLELHGKSIDGK-VLC 270
Score = 77 (32.2 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPE 307
+ P +Y+ NL + L F G+I +V + KGFG V +S+ E
Sbjct: 296 KTRPPGVPIYIKNLDETINDEKLKEEFSLF--GSISRAKVMMEVGQGKGFGVVCFSSFEE 353
Query: 308 AALAIQMGNARILCGKPI 325
A+ A+ N R++ K +
Sbjct: 354 ASKAVNEMNGRVVGSKTL 371
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 209 (78.6 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 51 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 110 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 167 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 130 (50.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
Score = 111 (44.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 73 (30.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 342
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 343 SLNGYRLGDRVLQVSF 358
Score = 67 (28.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQK 216
Score = 47 (21.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 209 (78.6 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 51 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 110 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 167 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 130 (50.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
Score = 111 (44.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 73 (30.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 342
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 343 SLNGYRLGDRVLQVSF 358
Score = 67 (28.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQK 216
Score = 47 (21.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 213 (80.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 57/150 (38%), Positives = 83/150 (55%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T L+ +F S G +E CKL++ DK + YGFV+Y + + A AI TLNG
Sbjct: 73 NYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYMEPKDAEKAINTLNG 131
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS F +R++ D
Sbjct: 132 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVD 188
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 189 QVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ 218
Score = 124 (48.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ + L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 116 (45.9 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T L + F +++ D+ TG+S G+GFV++ +DA+ AIN
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 129 LNGLRLQTKTIKVSYARPSSAS 150
Score = 70 (29.7 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADENVLWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIA 364
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 365 SLNGYRLGDRVLQVSF 380
Score = 68 (29.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRR-SAALAIV 103
++YV + +T L+++FS G + +++ + GF+ FDRR A AI
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIR-FDRRVEAEEAIK 213
Query: 104 TLNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 214 GLNGQKPPGATEPITVKFANNPSQK 238
Score = 49 (22.3 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQF--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 202 (76.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 117 (46.2 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A R+D G N+ V L +T L + FS A+++ D+ G S G+GFV++
Sbjct: 10 AEDCRDDI-GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+DA+ AI+ LNG L ++ I+ ++A
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVSYA 96
Score = 116 (45.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 299 AMAIASLNGYRLGDKILQVSF 319
Score = 77 (32.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 289
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 57 (25.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 165
Query: 104 TLNGRHIFG--QPIKVNWAYASSQRED 128
+ NG G +PI V +A +Q ++
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKN 192
Score = 44 (20.5 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 314 MGN 316
N
Sbjct: 166 SFN 168
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 202 (76.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 117 (46.2 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A R+D G N+ V L +T L + FS A+++ D+ G S G+GFV++
Sbjct: 10 AEDCRDDI-GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+DA+ AI+ LNG L ++ I+ ++A
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVSYA 96
Score = 116 (45.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 299 AMAIASLNGYRLGDKILQVSF 319
Score = 77 (32.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 289
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 57 (25.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 165
Query: 104 TLNGRHIFG--QPIKVNWAYASSQRED 128
+ NG G +PI V +A +Q ++
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKN 192
Score = 44 (20.5 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 314 MGN 316
N
Sbjct: 166 SFN 168
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 202 (76.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 56/155 (36%), Positives = 85/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRSMTQKDVEDMFSRFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI + NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 121 (47.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A R+D G N+ V L +T L + FS A+++ D+ G S G+GFV++
Sbjct: 10 AEDCRDDI-GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+DA+ AIN LNG L ++ I+ ++A
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 299 AMAIASLNGYRLGDKILQVSF 319
Score = 77 (32.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 289
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 44 (20.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 312
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 209 (78.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 115 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 171
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 172 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 130 (50.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 350 NGYRLGDRVLQVSFKTNKA 368
Score = 111 (44.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 112 LNGLRLQTKTIKVSYARPSSAS 133
Score = 73 (30.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 347
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 348 SLNGYRLGDRVLQVSF 363
Score = 67 (28.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQK 221
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 209 (78.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 115 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 171
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 172 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 129 (50.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 350 NGYRLGDRVLQVSF 363
Score = 111 (44.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 112 LNGLRLQTKTIKVSYARPSSAS 133
Score = 73 (30.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 347
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 348 SLNGYRLGDRVLQVSF 363
Score = 67 (28.6 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQK 221
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 211 (79.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 57/151 (37%), Positives = 83/151 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAIVTLN 106
N PQ +T L+ +F S G +E CKL++ DK + YGFV+Y D + A AI TLN
Sbjct: 71 NYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITEGQSLGYGFVNYIDPKDAEKAINTLN 129
Query: 107 GRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW 166
G + + IKV++A SS + N++V L +T L FS + +R++
Sbjct: 130 GLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 186
Query: 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 187 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 127 (49.8 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 195 NGKWLGNRQIRCNW 208
NG LG+R ++ ++
Sbjct: 368 NGYRLGDRVLQVSF 381
Score = 109 (43.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSF 181
S+ ED+ N+ V L +T L + F +++ D+ T G+S G+GFV++
Sbjct: 58 SNNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 149
Score = 72 (30.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 365
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 366 SLNGYRLGDRVLQVSF 381
Score = 65 (27.9 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 213
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 214 LNGQKPPGATEPITVKFANNPSQK 237
Score = 47 (21.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 209 (78.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 44 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 103 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 160 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 130 (50.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
Score = 111 (44.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
Score = 73 (30.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 349
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 350 SLNGYRLGDRVLQVSF 365
Score = 67 (28.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 209 (78.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 44 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 103 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 160 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 130 (50.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
Score = 111 (44.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
Score = 73 (30.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 349
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 350 SLNGYRLGDRVLQVSF 365
Score = 67 (28.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 188 (71.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 49/160 (30%), Positives = 81/160 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG++ P VT +L + F GPL ++ + + YG+V++ A A+ T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+P ++ W+ R SG N+F+ +L + + LF FS F +V
Sbjct: 79 MNFDLINGKPFRLMWSQPDD-RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ D G S+G+ +V F + A AI +NG L NRQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 186 (70.5 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 57/191 (29%), Positives = 95/191 (49%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK--KDKSS-YGFVDYFDRRSAA 99
D +T +V+V N + + L+E+FS GP E K+I+ KS +GFV Y +A
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFN--------------VFVGDLSPEV 144
A++ L+G+ I G+ + V A +R + F +++ +L +
Sbjct: 254 KAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR-- 202
D L FS F + S A+VM + G+ +GFG V F + EDA A++++NG+ +G++
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPL 371
Query: 203 -----QIRCNW 208
Q RC W
Sbjct: 372 HVTLGQARCRW 382
Score = 179 (68.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA 99
R S ++++ N+ + N L +FS+ G + CK++ D S G+ +FD +AA
Sbjct: 99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAA 158
Query: 100 -LAI-----VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFAC 152
AI V LN R ++ K A+ R D + NVFV + ++ D L
Sbjct: 159 NRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEI 218
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K
Sbjct: 219 FSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQK 276
Score = 111 (44.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 195 NGKWLGNRQIRCNWA 209
N + + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 99 (39.9 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGF 297
+E++ E + +T V+V N +++ L F G E V+V RD KGF
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGY--GPTESVKVIRDASGKSKGF 241
Query: 298 GFVRYSTHPEAALAIQMGNARILCGK 323
GFVRY TH A A+ + + + GK
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSINGK 267
Score = 78 (32.5 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPE 307
++ P +Y+ NL + L F + G+I +V + KGFG V +S+ +
Sbjct: 296 KSRPPGVPIYIKNLDETIDDEKLKEEFSSF--GSISRAKVMVEVGQGKGFGVVCFSSFED 353
Query: 308 AALAIQMGNARILCGKPI 325
A A+ N R + KP+
Sbjct: 354 ATKAVDEMNGRTVGSKPL 371
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 209 (78.6 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 51 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 110 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 167 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 130 (50.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
Score = 111 (44.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 73 (30.8 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 357 SLNGYRLGDRVLQVSF 372
Score = 67 (28.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQK 216
Score = 47 (21.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 209 (78.6 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 51 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 110 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 167 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 130 (50.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
Score = 111 (44.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 73 (30.8 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 357 SLNGYRLGDRVLQVSF 372
Score = 67 (28.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQK 216
Score = 47 (21.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 201 (75.8 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRNMTQKDVEDMFSRFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 121 (47.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A R+D G N+ V L +T L + FS A+++ D+ G S G+GFV++
Sbjct: 10 AEDCRDDI-GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+DA+ AIN LNG L ++ I+ ++A
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 116 (45.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 299 AMAIASLNGYRLGDKILQVSF 319
Score = 77 (32.2 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 289
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 59 (25.8 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 107 NLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 165
Query: 104 TLNGRHIFG--QPIKVNWAYASSQREDTS 130
+ NG G +PI V +A +Q ++ +
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 45 (20.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 314 MGN 316
N
Sbjct: 166 SFN 168
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 209 (78.6 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 67 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 125
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 126 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 182
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 183 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 212
Score = 130 (50.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 361 NGYRLGDRVLQVSFKTNKA 379
Score = 111 (44.1 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 123 LNGLRLQTKTIKVSYARPSSAS 144
Score = 73 (30.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 358
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 359 SLNGYRLGDRVLQVSF 374
Score = 67 (28.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 209 LNGQKPSGATEPITVKFANNPSQK 232
Score = 47 (21.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGP 73
++ C + + + PQV+N +S GP
Sbjct: 12 ESRNCSFMIISTMEPQVSNGPTSN--TSNGP 40
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 209 (78.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 55 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 113
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 114 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 170
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 171 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 200
Score = 130 (50.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 363 NGYRLGDRVLQVSFKTNKA 381
Score = 111 (44.1 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 111 LNGLRLQTKTIKVSYARPSSAS 132
Score = 73 (30.8 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 360
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 361 SLNGYRLGDRVLQVSF 376
Score = 67 (28.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 197 LNGQKPSGATEPITVKFANNPSQK 220
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 203 (76.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSPFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 122 (48.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A R+D G N+ V L +T L + FS A+++ D+ G S G+GFV++
Sbjct: 10 AEDCRDDI-GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNY 68
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+DA+ AIN LNG L ++ I+ ++A
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 117 (46.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 299 SMAIASLNGYRLGDKILQVSF 319
Score = 74 (31.1 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 289
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EA++AI N L K ++ S+
Sbjct: 290 VTMTNYEEASMAIASLNGYRLGDKILQVSF 319
Score = 58 (25.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 165
Query: 104 TLNGRHIFG--QPIKVNWAYASSQREDTS 130
+ NG G +PI V +A +Q ++ +
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 314 MGN 316
N
Sbjct: 166 SFN 168
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 209 (78.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 115 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 171
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 172 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 130 (50.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
Score = 111 (44.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 112 LNGLRLQTKTIKVSYARPSSAS 133
Score = 73 (30.8 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 362 SLNGYRLGDRVLQVSF 377
Score = 67 (28.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQK 221
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 209 (78.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D + A AI TLNG
Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L +T L FS + +R++ D
Sbjct: 115 LRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 171
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q TG SRG GF+ F + +A+ AI LNG+
Sbjct: 172 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 130 (50.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSP+ ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG LG+R ++ ++ A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
Score = 111 (44.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + +DA+ AIN
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 112 LNGLRLQTKTIKVSYARPSSAS 133
Score = 73 (30.8 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPF--GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 362 SLNGYRLGDRVLQVSF 377
Score = 67 (28.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + +T L+++FS G + +++ + GF+ + R A AI
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQK 221
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 201 (75.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 54/150 (36%), Positives = 83/150 (55%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ ++ L+ +FSS G +E KLI+ DK + YGFV+Y + A AI TLNG
Sbjct: 39 NYLPQNMSQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYLNPNDAERAISTLNG 97
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS D+ N+++ L +T + F + ++RV+ D
Sbjct: 98 LRLQSKTIKVSYARPSS---DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVD 154
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
Q +G SRG F+ F + +A+ AI DLNG+
Sbjct: 155 QASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Score = 112 (44.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L ++ L + FS A+++ D+ G S G+GFV++ N DA+ AI+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L ++ I+ ++A + S
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDS 116
Score = 112 (44.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
++S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ + E+A
Sbjct: 253 NSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEA 312
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 313 AMAIASLNGYRLGDKILQVSF 333
Score = 78 (32.5 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N+ +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 246 SGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 303
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 304 VTMTHYEEAAMAIASLNGYRLGDKILQVSF 333
Score = 56 (24.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/96 (23%), Positives = 46/96 (47%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDR 95
P D+ ++Y+ + +T ++E+F G + +++ S S G F+ + R
Sbjct: 112 PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKR 171
Query: 96 RSAALAIVTLNGRHIFG--QPIKVNWAYASSQREDT 129
A AI LNG+ G + + V +A + +Q ++T
Sbjct: 172 AEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNT 207
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 200 (75.5 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 118 (46.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 121 YASSQREDTSGHF---NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFG 177
Y ED G N+ V L +T L + FS A+++ D+ G S G+G
Sbjct: 5 YEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 178 FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
FV++ +DA+ AIN LNG L ++ I+ ++A
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 116 (45.9 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 299 AMAIASLNGYRLGDKILQVSF 319
Score = 77 (32.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 289
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 58 (25.5 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 165
Query: 104 TLNGRHIFG--QPIKVNWAYASSQREDTS 130
+ NG G +PI V +A +Q ++ +
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 44 (20.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 314 MGN 316
N
Sbjct: 166 SFN 168
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 189 (71.6 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 49/160 (30%), Positives = 82/160 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG++ P VT +L + F GPL ++ + + YG+V++ A A+ T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
+N I G+P ++ W+ R SG N+F+ +L + + LF FS F + +V
Sbjct: 79 MNFDLINGKPFRLMWSQPDD-RLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ D G S+G+ +V F + A AI +NG L NRQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 181 (68.8 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA 99
R S ++++ N+ + N L +FS+ G + CK++ D S G+ +FD +AA
Sbjct: 99 RLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAA 158
Query: 100 -LAI-----VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFAC 152
AI V LN R ++ K A+ R D + NVFV + ++ D L
Sbjct: 159 NRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKEL 218
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
FS + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K
Sbjct: 219 FSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
Score = 172 (65.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 51/181 (28%), Positives = 93/181 (51%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAA 99
D +T +V+V N + + L+E+FS GP E K+I+ KS +GFV Y +A
Sbjct: 194 DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQ 253
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFN--------------VFVGDLSPEV 144
A++ L+G+ I G+ + V A +R + F +++ +L +
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
D L FS F + S A+VM + G+ +GFG + F + E+A A++++NG+ +G++ +
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPL 371
Query: 205 R 205
+
Sbjct: 372 Q 372
Score = 111 (44.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 195 NGKWLGNRQIRCNWA 209
N + + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 96 (38.9 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGF 297
+E++ E + +T V+V N ++ L F G E V+V RD KGF
Sbjct: 184 EERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEY--GPTESVKVIRDSSGKSKGF 241
Query: 298 GFVRYSTHPEAALAIQMGNARILCGK 323
GFVRY TH A A+ + + + GK
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGK 267
Score = 86 (35.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPE 307
++ P +Y+ NL + L F + G+I +V + KGFG + +S+ E
Sbjct: 296 KSRPPGVPIYIKNLDETIDDEKLKEEFSSF--GSISRAKVMVEVGQGKGFGVICFSSFEE 353
Query: 308 AALAIQMGNARILCGKPIK 326
A A+ N RI+ KP++
Sbjct: 354 ATKAVDEMNGRIVGSKPLQ 372
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 200 (75.5 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 85
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 86 INTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIIN 142
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 143 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 121 (47.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A R+D G N+ V L +T L + FS A+++ D+ G S G+GFV++
Sbjct: 18 AEDCRDDI-GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 76
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+DA+ AIN LNG L ++ I+ ++A
Sbjct: 77 VTAKDAERAINTLNGLRLQSKTIKVSYA 104
Score = 116 (45.9 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 247 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 306
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 307 AMAIASLNGYRLGDKILQVSF 327
Score = 77 (32.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 240 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 297
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 298 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 327
Score = 58 (25.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 115 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 173
Query: 104 TLNGRHIFG--QPIKVNWAYASSQREDTS 130
+ NG G +PI V +A +Q ++ +
Sbjct: 174 SFNGHKPPGSSEPITVKFAANPNQNKNVA 202
Score = 44 (20.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 314 MGN 316
N
Sbjct: 174 SFN 176
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 241 (89.9 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQE 185
R DTS HF+VFVGDLS +V++ L + F+ F S+A+V+ D +T +S+G+GFVSF N++
Sbjct: 218 RIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQ 277
Query: 186 DAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELT--NGISVLFAEDGQ 243
+A++AI +NGKW+G R +R NWAA+ S + + + V T + SV Q
Sbjct: 278 NAENAIAGMNGKWIGKRAVRTNWAAR-KNSEENRDKLTFEQVFNSTKADNTSVYVGNISQ 336
Query: 244 EKSNED 249
+ ++ D
Sbjct: 337 QTTDAD 342
Score = 221 (82.9 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 62/194 (31%), Positives = 100/194 (51%)
Query: 35 SGNLPP---RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSS-Y 87
S + PP R D S V+VG++ V+N LL+ F+ G + K+I+ KS Y
Sbjct: 209 SASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 268
Query: 88 GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FN-------- 134
GFV + ++++A AI +NG+ I + ++ NWA + E+ FN
Sbjct: 269 GFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTS 328
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG++S + TDA L FS + ++ R+ KT R + FV + +E A AI ++
Sbjct: 329 VYVGNISQQTTDADLRDLFSTYGDIAEVRIF---KTQR---YAFVRYEKKECATKAIMEM 382
Query: 195 NGKWLGNRQIRCNW 208
NGK + Q+RC+W
Sbjct: 383 NGKEMAGNQVRCSW 396
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 231 TNGISVLFAEDGQEKSNEDAPENNPQY--TTVYVGNLSSEVTSVDLHRHFHALCVGTIED 288
TN + +E+ ++K + N+ + T+VYVGN+S + T DL F G I +
Sbjct: 298 TNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTY--GDIAE 355
Query: 289 VRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
VR+ + + + FVRY A AI N + + G ++CSW
Sbjct: 356 VRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSW 396
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 200 (75.5 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + A A
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERA 104
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ + N+++ L +T + FS F +
Sbjct: 105 INTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIIN 161
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 162 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 118 (46.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 121 YASSQREDTSGHF---NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFG 177
Y ED G N+ V L +T L + FS A+++ D+ G S G+G
Sbjct: 32 YEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 91
Query: 178 FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
FV++ +DA+ AIN LNG L ++ I+ ++A
Sbjct: 92 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 123
Score = 116 (45.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S + +F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 266 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 325
Query: 188 QSAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 326 AMAIASLNGYRLGDKILQVSF 346
Score = 77 (32.2 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 246 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGF 299
S + P N +++ NL + L + F G + +V+V RD KGFGF
Sbjct: 259 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGF 316
Query: 300 VRYSTHPEAALAIQMGNARILCGKPIKCSW 329
V + + EAA+AI N L K ++ S+
Sbjct: 317 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 346
Score = 58 (25.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++FS G + +++ + S G F+ FD+RS A AI
Sbjct: 134 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR-FDKRSEAEEAIT 192
Query: 104 TLNGRHIFG--QPIKVNWAYASSQREDTS 130
+ NG G +PI V +A +Q ++ +
Sbjct: 193 SFNGHKPPGSSEPITVKFAANPNQNKNVA 221
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+Y+ L +T D+ F G I + RV D +G F+R+ EA AI
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192
Query: 314 MGN 316
N
Sbjct: 193 SFN 195
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 199 (75.1 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 43/110 (39%), Positives = 64/110 (58%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV + + AA+AI LNG + +P+KV++A ASS + S H N+++ L P VT+
Sbjct: 154 YGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQ---STHANLYINRLEPHVTN 210
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
A L F F D +++ D TG SR GFV F + +A A++ +NG
Sbjct: 211 ANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 115 (45.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 32/97 (32%), Positives = 51/97 (52%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAAL 100
ST ++Y+ + P VTNA L+EVF S G + K++ + GFV + RR A
Sbjct: 194 STHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALK 253
Query: 101 AIVTLNGRHIFGQ--PIKVNWAYASSQREDTSGHFNV 135
A+ ++NG +I Q PI V +A S + + + N+
Sbjct: 254 AVSSMNGANIPFQSTPIYVKFANQLSGNNNGNNNNNI 290
Score = 69 (29.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 19/95 (20%), Positives = 42/95 (44%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S+ + F + + +L + + L+ F+ F S +++ + G +++
Sbjct: 442 SNNNNNIMSSFPIHISNLPNNIDETFLYKLFA-FGAISGVQLL-------NNGQAIITYL 493
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGD 217
+ + Q+AIN LNGK + R ++ + S D
Sbjct: 494 DYQTVQNAINTLNGKIISGRSLKVVCLTNSSPSND 528
Score = 65 (27.9 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 28/150 (18%), Positives = 61/150 (40%)
Query: 181 FRNQEDAQSAINDLNGKWLGNRQIRCN-WAAKGATSGDEKQSSDSKSVVELTNGISVLFA 239
+ N + + N+ N GN N + + + ++++ + + NG +
Sbjct: 374 YNNNNNNGNTNNNFNNNGNGNNNNNRNSYNGYDNNNYNNNNNNNNNNFSDDYNGYNNY-- 431
Query: 240 EDGQEKSNEDAPENNPQYTT---VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG 296
+G SN + NN + +++ NL + + L++ F G I V++ + G
Sbjct: 432 -NGNSSSNGNNSNNNNNIMSSFPIHISNLPNNIDETFLYKLF---AFGAISGVQLLNN-G 486
Query: 297 FGFVRYSTHPEAALAIQMGNARILCGKPIK 326
+ Y + AI N +I+ G+ +K
Sbjct: 487 QAIITYLDYQTVQNAINTLNGKIISGRSLK 516
Score = 59 (25.8 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKD 83
P DA T ++ V NI + + L+ +F G +E CK++ KKD
Sbjct: 76 PDLDALT--NLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKD 120
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 239 (89.2 bits), Expect = 6.7e-18, P = 6.7e-18
Identities = 76/277 (27%), Positives = 140/277 (50%)
Query: 50 VYVGNIHPQVTNALLQEVFSS-TGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+++G++ PQ T + +++ K+++ K SY FV + D+ S LAI
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQR 144
Query: 105 LNGRHI--FGQPIKVNWAYASS-----QREDTSGHFNVFVGDLSPEVTDATLFACFSV-F 156
NG+ + + K+N++ +S + ++S +++F+GDL+PEV+DA L+ F++ +
Sbjct: 145 -NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKY 203
Query: 157 PT-CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
P A+V+ D T +S+GFGFV F + + A+ ++ G +G++ IR AA
Sbjct: 204 PNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAA----- 258
Query: 216 GDEKQSSDSKSVVELTNG-ISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDL 274
G +S K V +L + + V Q N+ NN +T +G LS +T +L
Sbjct: 259 GSHVDTS-FKPVTKLDHHRVPV---PQSQPALNQFTDPNNTSFT---IGGLSGRITESEL 311
Query: 275 HRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 311
+HF + G + RV +D G++++ + A A
Sbjct: 312 EQHF--IGFGDLVYCRVSKDYQTGYIKFYSRSAAESA 346
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 199 (75.1 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + + A A
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYLNAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV++A SS+ T N+++ L +T + F F +
Sbjct: 78 INTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 126 (49.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ N +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 188 QSAINDLNGKWLGNRQIRCNWA 209
+ AIN LNG L ++ I+ ++A
Sbjct: 75 ERAINTLNGLRLQSKTIKVSFA 96
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 195 NGKWLGNRQIRCNW 208
NG LG++ ++ ++
Sbjct: 306 NGYRLGDKTLQVSF 319
Score = 74 (31.1 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+++ NL + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIA 303
Query: 314 MGNARILCGKPIKCSW 329
N L K ++ S+
Sbjct: 304 SLNGYRLGDKTLQVSF 319
Score = 47 (21.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 260 VYVGNLSSEVTSVDLHRHF----HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG 315
+Y+ L +T D+ F H + + D +G F+R+ EA AI
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 316 N 316
N
Sbjct: 168 N 168
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 212 (79.7 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 52/182 (28%), Positives = 93/182 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + + YGFV Y +A+ AI +
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 106 NGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V R+ + +F N++V +++PEVTD F + +
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
+ + DQ+TG+SRGFGFV+F + EDA A+ +LN K + + A K +E +
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELR 329
Query: 221 SS 222
S
Sbjct: 330 KS 331
Score = 198 (74.8 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 48/160 (30%), Positives = 77/160 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FS G + C+ + + Y +V+Y A+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
LN I G+P ++ W+ T G NVF+ +L + + L F+ F +V
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKT-GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
D+ G S+G+GFV + E A AI +NG L +++
Sbjct: 181 AQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 219
Score = 134 (52.2 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 31/105 (29%), Positives = 49/105 (46%)
Query: 107 GRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW 166
G G+ I SS +++VG+L P VT+A LF FS + + RV
Sbjct: 35 GASFTGEEIDTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCR 94
Query: 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
D T RS G+ +V++ D + A+ +LN + R R W+ +
Sbjct: 95 DAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQR 139
Score = 122 (48.0 bits), Expect = 0.00032, P = 0.00032
Identities = 60/239 (25%), Positives = 104/239 (43%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
++YV NI+P+VT+ + +F G + L + ++ +GFV++ A+ A+
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 105 LNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATL 149
LN + GQ + V A Y ++++E S + N+++ +L EV D L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 150 FACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
FS F + A+VM D T G E+ +S + + K N++ +
Sbjct: 363 RQLFSEFGPITSAKVMRDSIT--EPG---------EEGESKEGEESEK---NKENKPEEK 408
Query: 210 AKGATSGDEKQSSDSKSVVEL--TNGIS-VLFAE-DGQEKS----NEDAPENNPQYTTV 260
+ +EK+ DSKS +L + G V FA D K+ N+ N P Y +
Sbjct: 409 EGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVAL 467
Score = 89 (36.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTH 305
E +T +YV N++ EVT + F G + + RD +GFGFV +++H
Sbjct: 236 EMKANFTNIYVKNINPEVTDDEFRTLFEKY--GDVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 306 PEAALAIQMGNARILCGK 323
+A+ A+Q N + G+
Sbjct: 294 EDASKAVQELNEKEFHGQ 311
Score = 79 (32.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQM 314
V++ NL + + LH F A G I +V +D KG+GFV Y T A+ AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAF--GNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKH 208
Query: 315 GNARILCGKPI 325
N +L K +
Sbjct: 209 VNGMLLNEKKV 219
Score = 62 (26.9 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 290 RVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
++ + KGFGFV ++ +A A+ N R++ KP+
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPL 463
Score = 50 (22.7 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 240 EDGQEKSNEDA-PENNPQYTTV--YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 294
E+ KS E A E +Y V Y+ NL EV L + F G I +V RD
Sbjct: 325 EEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEF--GPITSAKVMRD 380
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 218 (81.8 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----- 86
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 138
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 117 (46.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFR 182
S ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ +DA+ AIN LNG L + I+ ++A + S
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 47 (21.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 199 (75.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D A AI TLNG
Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L ++ + FS + +R++ D
Sbjct: 103 LKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG 200
Q TG SRG GF+ F + +A+ AI LNG K LG
Sbjct: 160 QATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Score = 132 (51.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 195 NGKWLGNRQIRCNW 208
NG LG R ++ ++
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 109 (43.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 76 (31.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 344 SLNGYRLGERVLQVSF 359
Score = 64 (27.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + ++ ++++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 199 (75.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D A AI TLNG
Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L ++ + FS + +R++ D
Sbjct: 103 LKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG 200
Q TG SRG GF+ F + +A+ AI LNG K LG
Sbjct: 160 QATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Score = 132 (51.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 195 NGKWLGNRQIRCNW 208
NG LG R ++ ++
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 109 (43.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 76 (31.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 344 SLNGYRLGERVLQVSF 359
Score = 64 (27.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + ++ ++++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 172 (65.6 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 43/111 (38%), Positives = 62/111 (55%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T
Sbjct: 122 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQ 178
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+
Sbjct: 179 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 229
Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 51/185 (27%), Positives = 87/185 (47%)
Query: 34 LSGNLPPRFDASTCRSVYVGNIHPQVTN-ALLQEVFSST-----GPL-EGCKLIKKDK-- 84
L+G PP A+ +V N Q TN A+L +++ S GPL + + + D
Sbjct: 226 LNGQKPP--GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLL 283
Query: 85 -SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPE 143
+YG F + + +L G +I G P W +FV +L+P+
Sbjct: 284 NMAYGVKSRFSPMTID-GMTSLAGINIPGHP-GTGWC--------------IFVYNLAPD 327
Query: 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI LNG LG+R
Sbjct: 328 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 387
Query: 204 IRCNW 208
++ ++
Sbjct: 388 LQVSF 392
Score = 92 (37.4 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
TD++LF + P S+ V+ K +S G+GFV++ + +DA+ AIN LNG L + I
Sbjct: 95 TDSSLFEKWR--PLDSEVIVLG--KGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 150
Query: 205 RCNWAAKGATS 215
+ ++A + S
Sbjct: 151 KVSYARPSSAS 161
Score = 72 (30.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 32 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD 91
P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ + F +
Sbjct: 38 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFRE 92
Query: 92 YF 93
YF
Sbjct: 93 YF 94
Score = 72 (30.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 319 IFVYNLAPDADESILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 376
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 377 SLNGYRLGDRVLQVSF 392
Score = 47 (21.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+YV L +T +L + F G I R+ D +G GF+R+ EA AI+
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 197 (74.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 63/186 (33%), Positives = 96/186 (51%)
Query: 22 PSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK 81
PS + P P++S N D+ T ++ V + +T + +F S G +E CKL++
Sbjct: 16 PSGTSLPN-GPVISTN-GATDDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 71
Query: 82 KDKSS-----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVF 136
DK + YGFV+Y D A AI TLNG + + IKV++A SS + N++
Sbjct: 72 -DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLY 127
Query: 137 VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLN 195
V L ++ + FS + +R++ DQ T G SRG GF+ F + +A+ AI LN
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLN 187
Query: 196 G-KWLG 200
G K LG
Sbjct: 188 GQKPLG 193
Score = 134 (52.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQ 188
T + +FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 189 SAINDLNGKWLGNRQIRCNW 208
AI LNG LG+R ++ ++
Sbjct: 332 MAIASLNGYRLGDRVLQVSF 351
Score = 108 (43.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 99 LNGLKLQTKTIKVSYARPSSAS 120
Score = 77 (32.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 336 SLNGYRLGDRVLQVSF 351
Score = 64 (27.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIV 103
++YV + ++ ++++FS G + +++ ++ GF+ + R A AI
Sbjct: 125 NLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIK 184
Query: 104 TLNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 185 GLNGQKPLGAAEPITVKFANNPSQK 209
Score = 47 (21.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 260 VYVGNLSSEVTSVDLHRHF--HALCVGT---IEDVRVQRDKGFGFVRYSTHPEAALAIQ 313
+YV L ++ D+ + F + + + ++ V +G GF+R+ EA AI+
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIK 184
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 166 (63.5 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV+Y A A+ TLNG + + IKV++A SS E G N++V L ++
Sbjct: 87 YGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSS--ESIKGA-NLYVSGLPKNLSQ 143
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197
L F+ F +R++ D +G S+G GF+ F + +A+ AI +LNGK
Sbjct: 144 PDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 135 (52.6 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQ 188
T + +FV +L+PE + L+ F F +V+ D +T + +GFGFV+ N ++A
Sbjct: 269 TGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAV 328
Query: 189 SAINDLNGKWLGNRQIRCNW 208
AI LNG LGNR ++ ++
Sbjct: 329 VAIQSLNGYTLGNRVLQVSF 348
Score = 96 (38.9 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 171 GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
G+S G+GFV++ EDA+ A+N LNG L N+ I+ ++A + S
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSES 126
Score = 79 (32.9 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ E L + F G ++ V+V RD KGFGFV + + EA +AIQ
Sbjct: 275 IFVYNLAPETEENVLWQLFGPF--GAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQ 332
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 333 SLNGYTLGNRVLQVSF 348
Score = 68 (29.0 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFV 90
R+ + N PQ +T ++ +FSS G LE CKL++ DK S V
Sbjct: 25 RTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVR-DKVSGNLV 67
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 197 (74.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D A AI TLNG
Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L ++ + FS + +R++ D
Sbjct: 103 LKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG 200
Q TG SRG GF+ F + +A+ AI LNG K LG
Sbjct: 160 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Score = 134 (52.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190
G + +FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A A
Sbjct: 282 GGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341
Query: 191 INDLNGKWLGNRQIRCNW 208
I LNG LG R ++ ++
Sbjct: 342 IASLNGYRLGERVLQVSF 359
Score = 109 (43.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 76 (31.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 344 SLNGYRLGERVLQVSF 359
Score = 63 (27.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + ++ ++++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 197 (74.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D A AI TLNG
Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L ++ + FS + +R++ D
Sbjct: 103 LKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG 200
Q TG SRG GF+ F + +A+ AI LNG K LG
Sbjct: 160 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Score = 132 (51.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 195 NGKWLGNRQIRCNW 208
NG LG R ++ ++
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 109 (43.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 76 (31.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 344 SLNGYRLGERVLQVSF 359
Score = 63 (27.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + ++ ++++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 197 (74.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D A AI TLNG
Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L ++ + FS + +R++ D
Sbjct: 103 LKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG 200
Q TG SRG GF+ F + +A+ AI LNG K LG
Sbjct: 160 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Score = 132 (51.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 195 NGKWLGNRQIRCNW 208
NG LG R ++ ++
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 109 (43.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 76 (31.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 344 SLNGYRLGERVLQVSF 359
Score = 63 (27.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + ++ ++++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 197 (74.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ +T + +F S G +E CKL++ DK + YGFV+Y D A AI TLNG
Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV++A SS + N++V L ++ + FS + +R++ D
Sbjct: 103 LKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD 159
Query: 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG 200
Q TG SRG GF+ F + +A+ AI LNG K LG
Sbjct: 160 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Score = 132 (51.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +LSPE ++ L+ F F ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 195 NGKWLGNRQIRCNW 208
NG LG R ++ ++
Sbjct: 347 NGYRLGERVLQVSF 360
Score = 109 (43.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L +T + F +++ D+ TG+S G+GFV++ + DA AIN
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L + I+ ++A + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 76 (31.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NLS E L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 287 IFVYNLSPEADESVLWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 344
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 345 SLNGYRLGERVLQVSF 360
Score = 63 (27.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVT 104
++YV + ++ ++++FS G + +++ + GF+ + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 105 LNGRHIFG--QPIKVNWAYASSQR 126
LNG+ G +PI V +A SQ+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 201 (75.8 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 59/196 (30%), Positives = 97/196 (49%)
Query: 40 PRFDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYF 93
P D ++ + N PQ +T ++ +F+S G +E CKL++ DK + YGFV+Y
Sbjct: 33 PNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVR-DKVTGQSLGYGFVNYV 91
Query: 94 DRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF 153
A A+ + NG + + IKV+ YA + G N++V + +T L + F
Sbjct: 92 REEDALRAVSSFNGLRLQNKTIKVS--YARPSNDQIKGS-NLYVSGIPKSMTLHELESIF 148
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAK 211
F +R++ D TG S+G GFV F +++A AI LNG + QI +A
Sbjct: 149 RPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANN 208
Query: 212 GATSGDEKQSSDSKSV 227
A++ + SD ++V
Sbjct: 209 PASNNPKGLLSDLEAV 224
Score = 119 (46.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 101 AIVTLNGRHIFGQPIKVNWA----YASSQREDTS-GHFNVFVGDLSPEVTDATLFACFSV 155
A++T N ++ P++ + Y S+ D N+ + L +T + + F+
Sbjct: 5 ALLTPNNNNVPTSPVQTTYTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTS 64
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+++ D+ TG+S G+GFV++ +EDA A++ NG L N+ I+ ++A
Sbjct: 65 IGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYA 118
Score = 73 (30.8 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 251 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTH 305
P + Y ++V NLSS+ L + F G I +V++ RD KG+ FV S +
Sbjct: 368 PSDTAGYC-LFVYNLSSDTDDTLLWQLFSQF--GAIVNVKILRDLTQQCKGYAFVSMSNY 424
Query: 306 PEAALAIQMGNARILCGKPIK 326
EA A+ N L GK ++
Sbjct: 425 TEAYNAMLSLNGTNLAGKTLQ 445
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 224 (83.9 bits), Expect = 8.8e-17, P = 8.8e-17
Identities = 54/181 (29%), Positives = 97/181 (53%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRR 96
R D + ++Y+GN+ +VT+++L E+ GP+ + ++ + +GF ++ +
Sbjct: 4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQ 63
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVF 156
A LN +FG+PI+VN A + + +T N+FVG+L P V + L+ FS
Sbjct: 64 DVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
A + + GRS+G+GFVS+ + E A +AI +N ++L N+ I ++A K G
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKG 182
Query: 217 D 217
+
Sbjct: 183 E 183
Score = 113 (44.8 bits), Expect = 0.00093, P = 0.00093
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
+++VGN+ P V +L + FS+ G L + +D++ YGFV Y +A AI
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSG 131
+N + + +PI V++A+ + + G
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGERHG 186
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 167 (63.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 46/130 (35%), Positives = 70/130 (53%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLS 141
YGFV + + +A AI +NG + + + V + +RE G F NV++ +
Sbjct: 12 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFG 71
Query: 142 PEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201
++ D L F P S +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L
Sbjct: 72 EDMDDERLKDLFG--PALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 127
Query: 202 RQIRCNWAAK 211
+QI A K
Sbjct: 128 KQIYVGRAQK 137
Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 64 NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 121 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 180
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 181 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 232
Score = 98 (39.6 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 161 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 218
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 219 VTEMNGRIVATKPL 232
Score = 87 (35.7 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 173 SRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTN 232
S+G+GFV F QE A+ AI +NG L +R++ + + S E+++ E TN
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSRKEREAELGARAKEFTN 64
Query: 233 GISVLFAEDGQEKSNED 249
F ED ++ +D
Sbjct: 65 VYIKNFGEDMDDERLKD 81
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 193 (73.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 55/155 (35%), Positives = 83/155 (53%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALA 101
R+ + N PQ +T L+ +FSS G +E KLI+ DK + YGFV+Y + + A A
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYLNAKDAERA 77
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
I TLNG + + IKV+ A SS+ + N+++ L +T + F F +
Sbjct: 78 INTLNGLRLQSKTIKVSVARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGRIIN 134
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 135 SRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 124 (48.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ N +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 188 QSAINDLNGKWLGNRQIRCNWAAKGATS 215
+ AIN LNG L ++ I+ + A + S
Sbjct: 75 ERAINTLNGLRLQSKTIKVSVARPSSES 102
Score = 116 (45.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+F+ +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 195 NGKWLGNRQIR 205
NG LG++ ++
Sbjct: 306 NGYRLGDKTLQ 316
Score = 70 (29.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+++ NL + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIA 303
Query: 314 MGNARILCGKPIK 326
N L K ++
Sbjct: 304 SLNGYRLGDKTLQ 316
Score = 51 (23.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++F G + +++ + S G F+ FD+RS A AI
Sbjct: 107 NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIR-FDKRSEAEEAIA 165
Query: 104 TLNGRHIFG--QPIKVNWAYASSQRED 128
+ NG G +PI V +A +Q ++
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKN 192
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 210 (79.0 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 58/175 (33%), Positives = 91/175 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLE-GCKLIKK----DKSSYGFVDYFDRRSAALAIV 103
S+++G++ P + +++ FS+ G G K+I + Y FV+ D S +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 104 TLNGRHIFGQ--PIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTC 159
LNG+ + G P K YA+ +R + F+VFVGDL+ EV D L F FP+C
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSC 126
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWAA-KG 212
A+V+ D G SRG+GFV F ++ + + A+ + N LG + IR + A KG
Sbjct: 127 KGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKG 180
Score = 43 (20.2 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 239 AEDGQEKSNEDAPEN-NPQ 256
A DG E+ ED E+ NPQ
Sbjct: 256 AHDGTEEVEEDPSEDPNPQ 274
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 210 (79.0 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 61/222 (27%), Positives = 114/222 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G + K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+P+V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGATSGD 217
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRVK 181
Query: 218 EKQSSD--SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
+ S S S + +A+ G +++ + PQY
Sbjct: 182 PVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQY 223
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 210 (79.0 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 61/222 (27%), Positives = 114/222 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G + K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+P+V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGATSGD 217
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181
Query: 218 EKQSSD--SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
+ S S S + +A+ G +++ + PQY
Sbjct: 182 PVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQY 223
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 210 (79.0 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 61/222 (27%), Positives = 114/222 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G + K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+P+V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGATSGD 217
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181
Query: 218 EKQSSD--SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
+ S S S + +A+ G +++ + PQY
Sbjct: 182 PVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQY 223
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 210 (79.0 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 61/222 (27%), Positives = 114/222 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G + K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+P+V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGATSGD 217
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181
Query: 218 EKQSSD--SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
+ S S S + +A+ G +++ + PQY
Sbjct: 182 PVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQY 223
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 147 (56.8 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 161 DARVMWDQKTGRSRGFGFVSF-RNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
DARV+ D TG+S+G+G VSF N+ DA++AI + G+WLG RQI+ +WA + +
Sbjct: 2 DARVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPAPKST 61
Query: 220 QSSDSKSV 227
Q +++K +
Sbjct: 62 QENNTKQL 69
Score = 115 (45.5 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRY 302
Q K + +++ + TVY G ++S +T + + F G I ++RV +K + FVR+
Sbjct: 68 QLKFEDVVNQSSSKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKRYSFVRF 125
Query: 303 STHPEAALAIQMGNARILCGKPIKCSW 329
STH AA AI + G+ +KC W
Sbjct: 126 STHGSAAHAIVSVTGTTIEGRVVKCYW 152
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 208 (78.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 47/147 (31%), Positives = 82/147 (55%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTD 146
YGFV++ A I +N ++G+PI+VN A A + D N+F+G+L EV +
Sbjct: 75 YGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA--NIFIGNLDVEVDE 132
Query: 147 ATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
L+ FS F ++M D +TG+S+ F F++F + E + +A++ +NG++L NR I
Sbjct: 133 KLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPIS 192
Query: 206 CNWAAKGATSGDEKQSSDSKSVVELTN 232
++A K G E+ S ++ ++ N
Sbjct: 193 VSYAFKKDHKG-ERHGSAAERLLAAQN 218
Score = 83 (34.3 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
+++GNL EV L+ F A V ++ ++ RD K F F+ +++ + A+
Sbjct: 121 IFIGNLDVEVDEKLLYDTFSAFGV-ILQTPKIMRDPETGKSKSFAFINFASFEASDAAMD 179
Query: 314 MGNARILCGKPIKCSW 329
N + LC +PI S+
Sbjct: 180 AMNGQYLCNRPISVSY 195
Score = 70 (29.7 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
D+ T +G+GFV F ++EDA I +N L + IR N A+
Sbjct: 66 DRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKAS 109
Score = 53 (23.7 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPL 74
++Y G + +V+ LL E+F GP+
Sbjct: 14 TIYAGGLDDKVSETLLWELFVQAGPV 39
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 155 (59.6 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 116 KVNWAYASSQREDT--SGHFNVFVGDLSPEVTDATLFACFSV-FP-TCSDARVMWDQKTG 171
++NWA ++ + +++FVGDLS T+A L A F FP + RVM D +G
Sbjct: 235 RLNWASGATLSAPIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISG 294
Query: 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
+SR FGFV F + + Q A+ ++NG W R +R
Sbjct: 295 KSRCFGFVRFTEESERQRALIEMNGAWFAGRPLR 328
Score = 127 (49.8 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQ 313
+P TTV+VG LSS+V+ LH F G I+ V++ K GFV+YS EA AI
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPF--GLIQQVKIPPGKNCGFVKYSNREEAEEAIA 574
Query: 314 MGNARILCGKPIKCSW 329
++ G ++ SW
Sbjct: 575 AMQGFVIGGNRVRLSW 590
Score = 109 (43.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
VFVG LS +V++ TL F F ++ G++ GFV + N+E+A+ AI +
Sbjct: 523 VFVGGLSSDVSEPTLHTLFKPFGLIQQVKI----PPGKN--CGFVKYSNREEAEEAIAAM 576
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVEL 230
G +G ++R +W + + S + Q + V ++
Sbjct: 577 QGFVIGGNRVRLSWG-RVSVSNKKYQQQQQQQVAQV 611
Score = 67 (28.6 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK------KDKSS-YGFVDYFDRRSAALA 101
S++VG++ T A L F P K ++ KS +GFV + + A
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFP-NSIKTVRVMTDPISGKSRCFGFVRFTEESERQRA 313
Query: 102 IVTLNGRHIFGQPIKV 117
++ +NG G+P++V
Sbjct: 314 LIEMNGAWFAGRPLRV 329
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 226 (84.6 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 73/230 (31%), Positives = 116/230 (50%)
Query: 36 GNLPPRFDASTCRSVYVG----NIHPQV--TNALLQEVFSSTGPLEGCKLIKKDKSSYGF 89
G+L P +D +T R ++ NI+ ++ N L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 90 VDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQREDTS-------GHFNVFVGD 139
VD+ AA A++ NG I P +K+NWA +S + S + ++FVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 140 LSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198
L+P VT++ LF F + + + S A+++ DQ TG S+G+GFV F N ++ Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 199 LGNRQIRCNWAAKGATSGDEKQSSDS----KSVVELTN-GISVLFAEDGQ 243
L R I+ G TSG ++ S + +S L N + F GQ
Sbjct: 230 LNGRAIKV-----GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQ 274
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 223 (83.6 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 60/181 (33%), Positives = 96/181 (53%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
+VYVGN+ + AL+ E+ + GP+ + + + YGFV++ SA A
Sbjct: 13 TVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARA 72
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVF-PTCSDAR 163
LNG +FG+ I+VN A A Q+ G +FV +L P+V + LF FS F +
Sbjct: 73 LNGIRVFGKVIRVNKASADKQKTAEIGA-ELFVNNLDPQVDEKILFDTFSRFGQLVTPPN 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA----AKGATSGDEK 219
V+ D S+G+GFV+F + E + +A + +NG++L ++QI +A KG GDE
Sbjct: 132 VVRDANN-ISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGERHGDEA 190
Query: 220 Q 220
+
Sbjct: 191 E 191
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 176 (67.0 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 45/130 (34%), Positives = 69/130 (53%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLS 141
YGFV + + +A AI +NG + + + V + +RE G F NV++ +
Sbjct: 108 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFG 167
Query: 142 PEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201
++ D L F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L
Sbjct: 168 EDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 226
Query: 202 RQIRCNWAAK 211
+QI A K
Sbjct: 227 KQIYVGRAQK 236
Score = 165 (63.1 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 160 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 280 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 331
Score = 128 (50.1 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWA 120
+N I G+P+++ W+
Sbjct: 72 MNFDVIKGKPVRIMWS 87
Score = 126 (49.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 103 (41.3 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 47/169 (27%), Positives = 72/169 (42%)
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
P+ + V+ D+ G S+G+GFV F QE A+ AI +NG L +R++ + + S
Sbjct: 91 PSLRKSGVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGR-FKSR 144
Query: 217 DEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276
E+++ E TN F ED ++ +D G
Sbjct: 145 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDL-----------FGKFGP--------- 184
Query: 277 HFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
AL V + D + KGFGFV + H +A A+ N + L GK I
Sbjct: 185 ---ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 229
Score = 98 (39.6 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 260 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 317
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 318 VTEMNGRIVATKPL 331
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 225 (84.3 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 64/206 (31%), Positives = 106/206 (51%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ +T++ L+ +F G + CK+++++ S +GFV + +SA A L+
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 107 GRHIFGQPIKVNWAYASSQREDTSGH---FNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
G ++G+ + V +R +G+ NV+V +L VTD L FS + T S
Sbjct: 173 GSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVV 232
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-KQSS 222
VM D GRSRGFGFV+F N E+A+ A+ L G LG++++ A K + KQ
Sbjct: 233 VMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKF 291
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNE 248
+ + S L+ ++ E NE
Sbjct: 292 SDNFIAKPNMRWSNLYVKNLSESMNE 317
Score = 175 (66.7 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 55/211 (26%), Positives = 110/211 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSS-YGFVDYFDRRSAALAIVT 104
S+YVG++ P VT L + FS P+ L + KS Y ++++ SA+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 105 LNGRHIFGQPIKVNWAYA--SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
LN + G+ +++ W+ + +R +G N++V +L +T + L F F +
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC----NWAAKGATSGDE 218
+V+ ++ G+S+GFGFV F ++ A SA + L+G + +++ N + A +G++
Sbjct: 142 KVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQ 199
Query: 219 KQSSDS-KSVVE-LTNG-ISVLFAEDGQEKS 246
++ K+++E +T+ + LF++ G S
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSS 230
Score = 138 (53.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 46/165 (27%), Positives = 79/165 (47%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
+VYV N+ VT+ L +FS G + +++ +GFV++ + +A A+ +L
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 106 NGRHIFGQPIKVNWAYASSQREDT-----SGHF---------NVFVGDLSPEVTDATLFA 151
G + + + V A +R + S +F N++V +LS + + L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
F + A+VM + GRS+GFGFV F N E+++ A LNG
Sbjct: 323 IFGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNG 366
Score = 101 (40.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A + +S +++VGDLSP+VT+ L FS+ + + TG+S + +++F
Sbjct: 10 ALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINF 69
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ A +A+ LN L + +R W+ +
Sbjct: 70 DSPFSASNAMTRLNHSDLKGKAMRIMWSQR 99
Score = 94 (38.1 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGF 297
Q+ S+ + N +++ +YV NLS + L F C G I +V R KGF
Sbjct: 289 QKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFG--CYGQIVSAKVMCHENGRSKGF 346
Query: 298 GFVRYSTHPEAALAIQMGNARILCGKPI 325
GFV +S E+ A + N ++ GKPI
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPI 374
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 225 (84.3 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 51/166 (30%), Positives = 93/166 (56%)
Query: 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALA 101
T S+YVG++HP V ++L E FS+ GP+ ++ + + + Y +V++ A A
Sbjct: 30 TMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERA 89
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPT 158
+ T+N + G+P+++ W SQR+ SG N+F+ +L + + +++ FS+F
Sbjct: 90 MDTMNFEALHGKPMRIMW----SQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGN 145
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+V D+ G S+G+GFV F +E AQ+AI +NG L +++
Sbjct: 146 ILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKV 190
Score = 213 (80.0 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 77/299 (25%), Positives = 137/299 (45%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSS--YGFVDYFDRR 96
P S ++++ N+ + N + + FS G + CK+ I +D S YGFV +
Sbjct: 112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEE 171
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFA 151
+A AI +NG + G+ + V +QR +T+ F NV+V + TL
Sbjct: 172 AAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEK 231
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR---CNW 208
F+ F + VM + G+S+GFGFV+F N E+A++A+ L+ + ++ C
Sbjct: 232 LFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRA 289
Query: 209 AAKGATSGDEKQSSDSKSVVELTN--GISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLS 266
K + K+ + + G++ L+ ++ E ++D + Q+ + Y GN++
Sbjct: 290 QKKSERHAELKKKHEQHKAERMQKYQGVN-LYVKNLDETVDDDGLKK--QFES-Y-GNIT 344
Query: 267 SEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
S D + G R KGFGFV + EA A+ N++++C KP+
Sbjct: 345 SAKVMTDEN--------G--------RSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Score = 119 (46.9 bits), Expect = 0.00056, P = 0.00056
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VGDL P+V ++ LF FS RV D T S G+ +V+F+ DA+ A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 194 LNGKWLGNRQIRCNWAAK 211
+N + L + +R W+ +
Sbjct: 93 MNFEALHGKPMRIMWSQR 110
>UNIPROTKB|A6NKZ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000206748 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00646522 ProteinModelPortal:A6NKZ9 SMR:A6NKZ9
STRING:A6NKZ9 Ensembl:ENST00000369086 ArrayExpress:A6NKZ9
Bgee:A6NKZ9 Uniprot:A6NKZ9
Length = 85
Score = 200 (75.5 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVT 145
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 146 DATLFACFSVF 156
+ + F+ F
Sbjct: 71 TEDIKSAFAPF 81
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 206 (77.6 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 61/222 (27%), Positives = 113/222 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G + K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+P+V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGATSGD 217
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG + +R + A A+
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVK 181
Query: 218 EKQSSD--SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
+ S S S + +A+ G +++ + PQY
Sbjct: 182 PVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQY 223
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 214 (80.4 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 90/318 (28%), Positives = 146/318 (45%)
Query: 43 DASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-------------YG 88
+ S ++ + N PQ ++ L+ +FSS G +E KLI+ DK + YG
Sbjct: 50 EPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIR-DKMAGMSAHHTLGHSLGYG 108
Query: 89 FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDAT 148
FV+Y + A AI TLNG + + IKV++A SS D N+++ L +T
Sbjct: 109 FVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSS---DGIKDANLYISGLPKTMTQKN 165
Query: 149 LFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG-KWLG-NRQIRC 206
+ F+ + ++R++ DQ +G SRG F+ F + +A+ AI DLNG K G + I
Sbjct: 166 VEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITV 225
Query: 207 NWAAKGATSGDEKQSSDSKSVVELTNGISV-------LFAEDGQEKS--NEDAPENNPQY 257
+AA S + + S G V F+ + S + + ++
Sbjct: 226 KFAANPNQSKNSQLLSQLYHTQSRRFGGPVHHQPQRFRFSPMSVDHSVSSMNVASSSSSG 285
Query: 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALA 311
++V NL + L + F G + +V+V RD KGFGFV + + EAA+A
Sbjct: 286 WCIFVYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMA 343
Query: 312 IQMGNARILCGKPIKCSW 329
I N L K ++ S+
Sbjct: 344 ISSLNGYRLGDKVLQVSF 361
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 178 (67.7 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 54/154 (35%), Positives = 81/154 (52%)
Query: 54 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDYFDRRSAALAIVTLNG 107
N PQ ++ ++ +F S G +E CKLI+ DK + YGFV+Y + A AI LNG
Sbjct: 115 NYLPQTMSQDEIRSLFVSFGEVESCKLIR-DKVTGQSLGYGFVNYVKQEDAEKAINALNG 173
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD 167
+ + IKV+ A SS E G N++V L +T + L + FS + +R++ D
Sbjct: 174 LRLQNKTIKVSIARPSS--ESIKGA-NLYVSGLPKNMTQSDLESLFSPYGKIITSRILCD 230
Query: 168 QKTGR-----SRGFGFVSFRNQEDAQSAINDLNG 196
TG S+G GF+ F + +A AI +LNG
Sbjct: 231 NITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 130 (50.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FV +L+P+ + L+ F F +V+ D ++ + +GFGFV+ N E+A AI L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 195 NGKWLGNRQIRCNW 208
NG LGNR ++ ++
Sbjct: 423 NGYTLGNRVLQVSF 436
Score = 120 (47.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
N+ V L ++ + + F F +++ D+ TG+S G+GFV++ QEDA+ AIN
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 194 LNGKWLGNRQIRCNWAAKGATS 215
LNG L N+ I+ + A + S
Sbjct: 171 LNGLRLQNKTIKVSIARPSSES 192
Score = 79 (32.9 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL+ + L + F G ++ V+V RD KGFGFV + + EA LAIQ
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPF--GAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 420
Query: 314 MGNARILCGKPIKCSW 329
N L + ++ S+
Sbjct: 421 SLNGYTLGNRVLQVSF 436
Score = 46 (21.3 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 21/92 (22%), Positives = 40/92 (43%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---------KSSYGFVDYFDRRSAA 99
++YV + +T + L+ +FS G + +++ + GF+ + R A
Sbjct: 197 NLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEAD 256
Query: 100 LAIVTLNGRHIFG--QPIKVNWAYASSQREDT 129
AI LNG +PI V +A S +++
Sbjct: 257 RAIKELNGTTPKNSTEPITVKFANNPSSNKNS 288
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 176 (67.0 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 55/165 (33%), Positives = 84/165 (50%)
Query: 48 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKD------KSS---------YGFVD 91
R+ + N PQ +T L+ +FSS G +E KLI+ +SS YGFV+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVN 78
Query: 92 YFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFA 151
Y + + A AI TLNG + + IKV++A SS+ + N+++ L +T +
Sbjct: 79 YLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA---NLYISGLPRTMTQKDVED 135
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
F F ++RV+ DQ TG SRG F+ F + +A+ AI NG
Sbjct: 136 MFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 122 (48.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQ 188
TSG + +FV +L + + L+ F F ++ +V+ D T + +GFGFV+ N E+A
Sbjct: 252 TSG-WCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 310
Query: 189 SAINDLNGKWLGNRQIRCNW 208
AI LNG LG++ ++ ++
Sbjct: 311 MAIASLNGYRLGDKTLQVSF 330
Score = 100 (40.3 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-----------KTGRSRGF 176
D G N+ V L +T L + FS A+++ D+ G S G+
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGY 74
Query: 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
GFV++ N +DA+ AIN LNG L ++ I+ ++A + S
Sbjct: 75 GFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSES 113
Score = 75 (31.5 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 313
++V NL + L + F G + +V+V RD KGFGFV + + EAA+AI
Sbjct: 257 IFVYNLGQDADEGILWQMFGPF--GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIA 314
Query: 314 MGNARILCGKPIKCSW 329
N L K ++ S+
Sbjct: 315 SLNGYRLGDKTLQVSF 330
Score = 52 (23.4 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 22/89 (24%), Positives = 45/89 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS--SYG--FVDYFDRRSAAL-AIV 103
++Y+ + +T ++++F G + +++ + S G F+ FD+RS A AI
Sbjct: 118 NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIR-FDKRSEAEEAIA 176
Query: 104 TLNGRHIFG--QPIKVNWAYASSQREDTS 130
+ NG G +PI V +A +Q ++ +
Sbjct: 177 SFNGHKPPGSSEPITVKFAANPNQNKNVA 205
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/86 (44%), Positives = 57/86 (66%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTS 130
NGR I G+ +KVNWA SSQ++DTS
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTS 92
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVV 228
NG+ + ++++ NWA T +K+ + S +VV
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV 97
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 165 (63.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+++F GP K++ + KS +GFV + A A+ +
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 144
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 145 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 196
Score = 147 (56.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
NV++ + ++ D L F F +VM D+ +G+S+GFGFVSF EDAQ A+++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 83
Query: 194 LNGKWLGNRQIRCNWAAK 211
+NGK L +QI A K
Sbjct: 84 MNGKELNGKQIYVGRAQK 101
Score = 98 (39.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 125 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 182
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 183 VTEMNGRIVATKPL 196
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 208 (78.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 57/193 (29%), Positives = 98/193 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS-----SYGFVDYFDRRSAALAIV 103
+VYVG +V LL E+F G + + K + YGFV++ ++A AI
Sbjct: 14 AVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEFLSGKNADYAIK 73
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA- 162
+N +G+P +VN A A S++ D N+F+G+L P++ L+ FS F
Sbjct: 74 IMNMIKRYGKPTRVNKASAHSKKLDVGA--NIFIGNLDPQI-GKLLYDTFSTFGVILQTP 130
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
R+M + TG S+G+ F+ F + + +AI +N ++L N I + A K + G E+ S
Sbjct: 131 RIMRNPDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKKDSKG-ERHGS 189
Query: 223 DSKSVVELTNGIS 235
++ ++ N +S
Sbjct: 190 GTEQLLAAQNPLS 202
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 200 (75.5 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 60/222 (27%), Positives = 112/222 (50%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G + K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+P+V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGATSGD 217
C +V+ D TG S+G+GFV F ++ + + A+ + G LG + +R + A A+
Sbjct: 123 CRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVK 181
Query: 218 EKQSSD--SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQY 257
+ S S S + +A+ G +++ + PQY
Sbjct: 182 PVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQY 223
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 201 (75.8 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 54/181 (29%), Positives = 94/181 (51%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK-KDKSS--YGFVDYFDRRSAALAIVTLN 106
+Y+ N+ + N + + FS G + C + K +D +S YGFV + +A AI +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 107 GRHIFGQPIKVNWAYASSQRE-DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
G Q + V RE + + HF N++V +LS E T+ L F + + ++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 234
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
M D++ GRSR FGFV++ N + A +A+ L+GK LG+ + + A+ + + +Q +
Sbjct: 235 MLDEE-GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFL--YVARALSKAERQQEINR 291
Query: 225 K 225
K
Sbjct: 292 K 292
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 187 (70.9 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 37/95 (38%), Positives = 59/95 (62%)
Query: 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192
+ +F GDL EV D L F+ FPT + A+V+ D++TG+++G+GFVSF N D +A+
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 193 DLNGKWLGNRQIRC---NWAAKGATSGDEKQSSDS 224
++NGK++GNR I+ +W + E+Q S
Sbjct: 197 EMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHS 231
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 205 (77.2 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 53/204 (25%), Positives = 101/204 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
++Y+ N+ QV +L E+F G ++ I +DK + YGFV+Y A
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVH-IPRDKINGYHAGYGFVEYEYEYECEYAAN 79
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN +FG+ ++ N A + D N+F+G+L EV + LF FS F +
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVGA--NLFIGNLDDEVDEKMLFDIFSSFGQIMTVK 137
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
VM ++ S+G GF+S+ N E + AI ++N +++ N+++ ++A K + G E+ +
Sbjct: 138 VMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKG-ERHGTA 195
Query: 224 SKSVVELTNGISVLFAEDGQEKSN 247
++ + +++ + +N
Sbjct: 196 AERFIAANKALNLYPLNENNNNNN 219
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 205 (77.2 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 53/204 (25%), Positives = 101/204 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIV 103
++Y+ N+ QV +L E+F G ++ I +DK + YGFV+Y A
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVH-IPRDKINGYHAGYGFVEYEYEYECEYAAN 79
Query: 104 TLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN +FG+ ++ N A + D N+F+G+L EV + LF FS F +
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVGA--NLFIGNLDDEVDEKMLFDIFSSFGQIMTVK 137
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
VM ++ S+G GF+S+ N E + AI ++N +++ N+++ ++A K + G E+ +
Sbjct: 138 VMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKG-ERHGTA 195
Query: 224 SKSVVELTNGISVLFAEDGQEKSN 247
++ + +++ + +N
Sbjct: 196 AERFIAANKALNLYPLNENNNNNN 219
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 161 (61.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 65/213 (30%), Positives = 92/213 (43%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
A + + S +FVG+L V A L F V++D+ TGRSRGFGFV+
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAED 241
+ + ++A NG L R +R N A ++ S +S ++G +
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKREDGFSRGPRSSFG-SSGSG--YGGG 195
Query: 242 GQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV--QRD----K 295
G A N VYVGNLS V + L F G + + RV RD K
Sbjct: 196 G----GSGAGSGN----RVYVGNLSWGVDDMALESLFSEQ--GKVVEARVIYDRDSGRSK 245
Query: 296 GFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
GFGFV Y + E AI+ + L G+ I+ S
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Score = 150 (57.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQS 189
SG+ V+VG+LS V D L + FS +ARV++D+ +GRS+GFGFV++ + ++ Q+
Sbjct: 202 SGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260
Query: 190 AINDLNGKWLGNRQIRCNWA 209
AI L+G L RQIR + A
Sbjct: 261 AIKSLDGADLDGRQIRVSEA 280
Score = 90 (36.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 39 PPRFDA-STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-----YGFVDY 92
PP+ + S ++VGN+ V +A L ++F S G +E ++I DK + +GFV
Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIY-DKITGRSRGFGFVTM 139
Query: 93 FDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED 128
A NG + G+P++VN +RED
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED 175
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 194 (73.4 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLE-GCKLIKKD----KSSYGFVDYFDRRSAALAIV 103
S+++G++ P + + F++ G L K+I+ + Y FV++ D +A +
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 104 TLNGRHIFGQ-P---IKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+NG+ + G P K+N+A Q D S +++FVGDL+ +V D L+ F V+P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTADVDDGMLYEFFVKVYPS 122
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWA 209
C +V+ DQ G S+G+GFV F ++ + + A+ + G LG++ +R + A
Sbjct: 123 CRGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
Score = 82 (33.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 251 PENNPQYTTVYVGNLSSEVTSVDLHRHF---HALCVG---TIEDVRVQRDKGFGFVRYST 304
P+N+P+Y+ ++VG+L+++V L+ F + C G ++ V KG+GFV+++
Sbjct: 90 PDNSPEYS-LFVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLDQAGVS--KGYGFVKFTD 146
Query: 305 HPEAALAIQMGNARILCG-KPIKCS 328
E A+ + G KP++ S
Sbjct: 147 ELEQKRALTECQGAVGLGSKPVRLS 171
Score = 73 (30.8 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 21/95 (22%), Positives = 44/95 (46%)
Query: 134 NVFVGDLSPEVTDATLFACFSVF-PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192
++++GDL P + + + F+ +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 193 DLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSV 227
+NGK L + AT G + +S S+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSL 98
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 50/174 (28%), Positives = 86/174 (49%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSS-YGFVDYFDRRSAALAIVTL 105
+VY+ N + + L+E+F GP K++ + KS +GFV + A A+ +
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 106 NGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLF 150
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 143
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
FS F T + A+VM + GRS+GFGFV F + E+A A+ ++NG+ + + +
Sbjct: 144 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 195
Score = 148 (57.2 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
NV++ + ++ D L F F +VM D+ +G+S+GFGFVSF EDAQ A+++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 82
Query: 194 LNGKWLGNRQIRCNWAAK 211
+NGK L +QI A K
Sbjct: 83 MNGKELNGKQIYVGRAQK 100
Score = 98 (39.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALA 311
Q +YV NL + L + F GTI +V R KGFGFV +S+ EA A
Sbjct: 124 QGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 181
Query: 312 IQMGNARILCGKPI 325
+ N RI+ KP+
Sbjct: 182 VTEMNGRIVATKPL 195
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 198 (74.8 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 183 (69.5 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 63/188 (33%), Positives = 91/188 (48%)
Query: 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYF 93
L P +A+ R VY+GNI VTN L ++ G +E +++ S +GF
Sbjct: 68 LDPSSEAA--RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 94 DRRSAALAIVTLNGRHIFGQPIKVNWA---YASS------QREDTS---GHFNVFVGDLS 141
A + LNG + G+ IKVN ASS Q ED++ + V+VG+L+
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA 185
Query: 142 PEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201
VT L FS A+V T +S GFGFV+F ++ED ++AI LN L
Sbjct: 186 KTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEG 245
Query: 202 RQIRCNWA 209
++IR N A
Sbjct: 246 QKIRVNKA 253
Score = 129 (50.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V++G++ VT+ L +VM+D+ +GRSR FGF + ++ EDA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 195 NGKWLGNRQIRCNWAAKG-ATSGDEK--QSSDSKSV 227
NG + R+I+ N K A+S D QS DS V
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFV 173
Score = 78 (32.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 28/86 (32%), Positives = 40/86 (46%)
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR------DKGFGFV 300
+ED+ + Y VYVGNL+ VT L F G + +V R GFGFV
Sbjct: 167 SEDSAFVDSPYK-VYVGNLAKTVTKEMLENLFSEK--GKVVSAKVSRVPGTSKSTGFGFV 223
Query: 301 RYSTHPEAALAIQMGNARILCGKPIK 326
+S+ + AI N +L G+ I+
Sbjct: 224 TFSSEEDVEAAIVALNNSLLEGQKIR 249
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 186 (70.5 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 55/194 (28%), Positives = 86/194 (44%)
Query: 22 PSLLAAPQIE--PILSGNLPPRFDASTCRSVYVGN---IHPQVTNALLQEVFSSTGPLEG 76
PS+ PQ+ PI+ PPR + G NA+ QE+ +
Sbjct: 99 PSIFMPPQLRAAPIM---FPPRVLGIPAPATIEGAPALYETPAVNAIPQELLRTQALQSD 155
Query: 77 CKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVF 136
+ K + F + A V G ++ P W D F VF
Sbjct: 156 IDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEW-----DEND----FRVF 206
Query: 137 VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
GDL EV+D L F +P+ A+V+ + +T +S+G+GFVSFR+ ED A+ +++G
Sbjct: 207 CGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDG 266
Query: 197 KWLGNRQIRCNWAA 210
K++GNR I+ +A
Sbjct: 267 KYVGNRPIKLRKSA 280
Score = 41 (19.5 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 22 PSLLAAPQIEPI 33
PSLLAAP PI
Sbjct: 63 PSLLAAPPFIPI 74
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 198 (74.8 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 50/158 (31%), Positives = 83/158 (52%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSA 98
D ++ ++ + + +T+ L +FS GP+ CK+++ K+ Y GFVDY +
Sbjct: 88 DRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDS 147
Query: 99 ALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFP 157
AI LNG ++ + +KV++A Q +DT N++V +LS + D L FS +
Sbjct: 148 EDAIQKLNGFYVRNKRLKVSYARPGGQSIKDT----NLYVINLSRNINDDMLDRIFSPYG 203
Query: 158 TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195
++ D+ TGR RG FV + +E+AQ AI LN
Sbjct: 204 LIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALN 241
Score = 145 (56.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 29/91 (31%), Positives = 53/91 (58%)
Query: 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184
Q+ D + N+ + L ++TD L+ FS + ++M D KTG S G+GFV ++ +
Sbjct: 85 QQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTE 144
Query: 185 EDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
D++ AI LNG ++ N++++ ++A G S
Sbjct: 145 SDSEDAIQKLNGFYVRNKRLKVSYARPGGQS 175
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 198 (74.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 198 (74.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 198 (74.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 198 (74.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 198 (74.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 198 (74.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 198 (74.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 198 (74.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 63/223 (28%), Positives = 106/223 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ D S LAI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISV 236
LNG L R ++ + + DS + E T GI +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDEL-ERT-GIDL 351
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 55/169 (32%), Positives = 88/169 (52%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTL 105
++VGN+ V + L +F G +E ++I + D+S +GFV A A+
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCS 160
N + G+ + VN A R + + F V+VG+L +V + L FS
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
+ARV++D++TGRSRGFGFV+ + ++ AI+ L+G+ L R IR N A
Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 115 (45.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
+ S +FVG+L+ +V L F T A V+++++T +SRGFGFV+ + ++A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 188 QSAINDLNGKWLGNRQIRCNWAA 210
++A+ N L R + N AA
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAA 227
Score = 71 (30.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 28/83 (33%), Positives = 37/83 (44%)
Query: 248 EDAPENNPQYTTVYVGNLSSEVTSVDLHRHF--HALCVGT--IEDVRVQRDKGFGFVRYS 303
E AP VYVGNL +V + L + F H V + D R +GFGFV S
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Query: 304 THPEAALAIQMGNARILCGKPIK 326
E AI + + L G+ I+
Sbjct: 294 DVDELNEAISALDGQNLEGRAIR 316
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 193 (73.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 60/217 (27%), Positives = 104/217 (47%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EPI NL P + R+V+ + ++ L++ FS+ G + ++I + +
Sbjct: 150 SPVREPI--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 205
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ + +S LAI L G+ + G PI V + A R + +SG
Sbjct: 206 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSSGPM 264
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F + +M D TGRS+G+GF++F + E A+ A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVEL 230
LNG L R +R + G + D + ++L
Sbjct: 325 LNGFELAGRPMRVGHVTERLDGGTDITFPDGEQELDL 361
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 196 (74.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 76/291 (26%), Positives = 129/291 (44%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSS-YGFVDYFDRRSAALAIVTLN 106
+++V N+ V NA+L + FSS G + CK+ +K S YG+V + SA AI +N
Sbjct: 275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVN 334
Query: 107 GRHIFGQPIKVNWAYASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
G I G+PI V + +R F ++ E+ L F +C +
Sbjct: 335 GTLILGKPINVERFVSKVERYKVENKVFFRNADESITIEILQQELSNRFGEIESC----I 390
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDS 224
+ + G+S+G G V F+NQEDAQ + + +G + + G T+ S +
Sbjct: 391 LKNDANGKSKGLGLVEFKNQEDAQKILTE-SGALIIS-------TIDGTTT-----VSSN 437
Query: 225 KSVVELTNGISVLFAEDGQEKSNEDAPENNPQYT--TVYVGNLSSEVTSVDLHRHF--HA 280
+E+ NG + D + E E + T ++++ N+ + + F H
Sbjct: 438 GGTIEI-NGKPITI--DRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHG 494
Query: 281 LCVGT--IEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
+G ++D R+KGFGF+ +S EA A+ N K I+ S+
Sbjct: 495 TIIGIKIVQDENA-RNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSF 544
Score = 195 (73.7 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 47/154 (30%), Positives = 81/154 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTG-----PLEGCKLIKKDKS-SYGFVDYFDRRSAALAI 102
S+YVG++ V +L E+FS G + C+ +S Y +V++F+ A A+
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 103 VTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
TLN + G+P ++ W+Y + T+ N+FV +L V +A L+ FS F
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196
+V +++ G S+G+G+V F + A+ AI +NG
Sbjct: 304 KVEFEK--GISKGYGYVHFETNDSAEKAIEKVNG 335
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/127 (23%), Positives = 66/127 (51%)
Query: 103 VTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
+ +NG+ I IK + R+ T+ ++F+ ++ + + F+ T
Sbjct: 441 IEINGKPITIDRIKSKVERFTEYRKKTTD-LSLFINNIDESIDRDLIKEEFAKHGTIIGI 499
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+++ D+ R++GFGF+SF ++AQ A++ LNG G++QI+ +++ K + K +
Sbjct: 500 KIVQDENA-RNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNG 558
Query: 223 DSKSVVE 229
+S + +
Sbjct: 559 NSTKITK 565
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 141 (54.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 38/113 (33%), Positives = 61/113 (53%)
Query: 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181
+S Q E +G N+F+ ++ E D L A F F A+V D+ TG S+ FGF+S+
Sbjct: 329 SSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 387
Query: 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGI 234
+Q AQ+AIN +NG L ++++ +G ++Q SK+ L NG+
Sbjct: 388 DSQAAAQNAINTMNGCQLSGKKLKVQLKRD---NGQQQQQQQSKN--PLFNGL 435
Score = 96 (38.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYG--FVDYFDRRSAALAIVTLN 106
++VG + V+ +Q +FS G ++ ++++ ++S G F+ Y + A A+ LN
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 107 GRHIF-GQ--PIKVNWAYASSQRE 127
GRHI G P+ V WA +R+
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQ 194
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 193 (73.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 55/192 (28%), Positives = 97/192 (50%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P +PI NL P + R+V+ + ++ L+E FS+ G + ++I + +
Sbjct: 132 SPVRQPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSR 187
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G ++++ D S LAI L+G+ + G PI V + A R + ++G
Sbjct: 188 RSKGIAYIEFVDSTSVPLAI-GLSGQRLLGVPIIVQASQAEKNRAAALANNLQKGSAGPM 246
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 194 LNGKWLGNRQIR 205
LNG L R ++
Sbjct: 307 LNGFELAGRPMK 318
Score = 113 (44.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 22 PSLLAAPQIEP----ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC 77
P ++ A Q E L+ NL + A R +YVG++H +T +L+ +F G ++
Sbjct: 218 PIIVQASQAEKNRAAALANNLQ-KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIDSI 275
Query: 78 KLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS 130
+L+ ++ YGF+ + D A A+ LNG + G+P+KV ++R D S
Sbjct: 276 QLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHV---TERTDAS 329
Score = 47 (21.6 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 187 AQSAINDLNGKWLGNRQI 204
A +A++ L+G+W G + I
Sbjct: 477 AMAAVSALHGRWFGGKMI 494
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 189 (71.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 57/220 (25%), Positives = 105/220 (47%)
Query: 34 LSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYG 88
++ NLP + C + + ++ P VT +LL E+F P+ I KDK S
Sbjct: 1 MASNLPQERNHEAC--LLIRDLDPMVTESLLMELFIQAAPVVKV-FIPKDKLTQQHSGRA 57
Query: 89 FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDAT 148
+V++ A A+ + +F + IK+ + + D N+F+G+L +V +
Sbjct: 58 YVEFQSSSDAEYALKVMKFVRLFNKEIKIK--KENKDKVDIGA--NLFIGNLDADVDERI 113
Query: 149 LFACFSVFPTCS-DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207
L FS F T +VM D+ G S+GF F++F + E + +AI +N ++L N+ I
Sbjct: 114 LHDTFSRFGTIIFTPKVMRDEN-GVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVT 172
Query: 208 WAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSN 247
+A K +E+ S ++ ++ + L + Q+ S+
Sbjct: 173 YARK--KDSNERHGSSAERIIAASRNTGYLNQQQQQQSSS 210
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 185 (70.2 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 55/169 (32%), Positives = 82/169 (48%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTL 105
++VGN+ V + L +F G +E ++I D+S +GFV A A+
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCS 160
N + G+ + VN A R + F ++VG+L +V L FS
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209
DARV+ D++TGRSRGFGFV N+ + AI L+G+ L R I+ N A
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 110 (43.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FVG+L +V L F T + V++++ T +SRGFGFV+ E+A+ A+
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQ 220
N + R++ N AA S E+Q
Sbjct: 175 NSFEVNGRRLTVNRAAPRG-SRPERQ 199
Score = 94 (38.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 251 PENNPQ-YTT---VYVGNLSSEVTSVDLHRHF--HALCVGT--IEDVRVQRDKGFGFVRY 302
PE P+ Y +YVGNL +V S L R F H V + D R +GFGFV+
Sbjct: 196 PERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQM 255
Query: 303 STHPEAALAIQMGNARILCGKPIK 326
S E +AI + + L G+ IK
Sbjct: 256 SNENEVNVAIAALDGQNLEGRAIK 279
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 184 (69.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192
F +FVGDL +VT+ L F +PT A+V++D K G+SRGFGFVSF + D SA N
Sbjct: 200 FRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFD-KVGKSRGFGFVSFSSSSDYISAFN 258
Query: 193 DLNGKWLGNRQIR 205
+NGK++GNR I+
Sbjct: 259 TMNGKYIGNRPIK 271
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 169 (64.5 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FVG LS D++L F+ F ++A V+ D++TGRSRGFGFVSF ++ A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 195 NGKWLGNRQIRCNWAAKGATS 215
+GK L RQIR N A + +++
Sbjct: 97 DGKELNGRQIRVNLATERSSA 117
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 168 (64.2 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 33/95 (34%), Positives = 59/95 (62%)
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
HF +FVG+L +V D +L+ FS +P+ +V+ D++ G++RGFGFVSF++ + A
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAW 87
Query: 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQSS-DSK 225
+ NGK++G+R ++ + A + + + DSK
Sbjct: 88 REKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 168 (64.2 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+F+G LS + T+ +L FS + T + V+ D++T RSRGFGFV+F N EDA+ A+ +
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 195 NGKWLGNRQIRCNWAAK-GATSG 216
NGK + R IR + A K G SG
Sbjct: 85 NGKQVDGRMIRVDEAGKSGGRSG 107
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 190 (71.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 52/172 (30%), Positives = 87/172 (50%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKSSYG--FVDYFDRRSAALAIV 103
R+V+ + +V L+E FSS G + +LI K K G ++++ D S ALA+
Sbjct: 237 RTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL- 295
Query: 104 TLNGRHIFGQPIKVNWAYASSQR----------EDTSGHFNVFVGDLSPEVTDATLFACF 153
L+G+ + G PI V A R + +G ++VG L +T+ L F
Sbjct: 296 GLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIF 355
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205
F +++ D +TGRS+G+GF+++ N +DA+ A+ LNG L R ++
Sbjct: 356 EPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK 407
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 189 (71.6 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 56/192 (29%), Positives = 94/192 (48%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P +PI NL P + R+V+ + ++ L++ FS+ G + ++I + +
Sbjct: 150 SPVRQPI--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSR 205
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------SGHF 133
S G +V++ D S LAI L G+ + G PI V + A R +G
Sbjct: 206 RSKGIAYVEFVDSTSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMASMLQRGGAGPM 264
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F ++M D +TGRS+G+GF+SF + E A+ A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 324
Query: 194 LNGKWLGNRQIR 205
LNG L R ++
Sbjct: 325 LNGFELAGRPMK 336
Score = 121 (47.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTL 105
+YVG++H +T +L+ +F G +EG +L+ ++ YGF+ + D A A+ L
Sbjct: 266 LYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQL 325
Query: 106 NGRHIFGQPIKVNWAYASSQREDTS 130
NG + G+P+KV ++R D S
Sbjct: 326 NGFELAGRPMKVGHV---TERSDAS 347
Score = 39 (18.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 187 AQSAINDLNGKWLGNRQI 204
A + ++ L+G+W + I
Sbjct: 493 AMAVVSSLHGRWFAGKMI 510
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 186 (70.5 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 66/213 (30%), Positives = 100/213 (46%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
+V+V N+ + N L ++FS+ G + CK + +D S YGFV ++ S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCK-VARDASGVSKGYGFVQFYSDLSVYTACNF 90
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
NG I Q I V + S + D S F NV+V +L TDA L F F + A
Sbjct: 91 HNGTLIRNQHIHV-CPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAV 149
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
VM D + G+SR FGFV+F E A +AI +NG + +++ G ++ D
Sbjct: 150 VMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV-----GRAQRKTNRTED 203
Query: 224 SKSVVELTNGISVLFAEDGQE---KSNEDAPEN 253
K+ EL I + G K+ +D+ +N
Sbjct: 204 LKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 41/134 (30%), Positives = 62/134 (46%)
Query: 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF------------ 133
+GFV++ +A AI +NG + + + V A + R ED F
Sbjct: 161 FGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTR 220
Query: 134 ---NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190
N++V +L V + L FS F T + +VM G S+G GFV F E+A A
Sbjct: 221 KGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKA 279
Query: 191 INDLNGKWLGNRQI 204
+ +NGK +GN+ I
Sbjct: 280 MLKMNGKMVGNKPI 293
Score = 115 (45.5 bits), Expect = 0.00079, P = 0.00079
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164
LN + G+P+++ ++ SG NVFV +L + + L FS F +V
Sbjct: 4 LNYCKLKGKPMRIMFSERDPSNR-MSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKV 62
Query: 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR-CNWAAKGATSGDEKQSSD 223
D +G S+G+GFV F + +A N NG + N+ I C + ++G ++
Sbjct: 63 ARDA-SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNV 121
Query: 224 S-KSVVELTNGISV--LFAEDGQEKSN---EDAPENNPQYTTVYVGNLSSEVTSVD 273
K++VE + LF E G+ S +D + ++ V + VT+++
Sbjct: 122 YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 148 (57.2 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+FVG L+ + L FS F S+ V+ D++T RSRGFGF++F N E A +A+ +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 195 NGKWLGNRQIRCNWAAKGA 213
NG+ L RQIR + A K A
Sbjct: 68 NGESLDGRQIRVDHAGKSA 86
Score = 38 (18.4 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 294 DKGFGFVRYSTHPEA 308
D+G+G RY P A
Sbjct: 109 DQGYGSGRYDNRPGA 123
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 166 (63.5 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
HF +FVG+L P+ D L FS +P+ S V D+KT +++GFGFV+F ED A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 192 NDLNGKWLGNRQIR 205
++NGK++G ++
Sbjct: 115 QEMNGKYIGQHPVQ 128
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 166 (63.5 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
HF +FVG+L P+ D L FS +P+ S V D+KT +++GFGFV+F ED A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 192 NDLNGKWLGNRQIR 205
++NGK++G ++
Sbjct: 115 QEMNGKYIGQHPVQ 128
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 186 (70.5 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 56/192 (29%), Positives = 95/192 (49%)
Query: 27 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK 84
+P EP+ NL P + R+V+ + ++ L++ FS+ G + ++I + +
Sbjct: 140 SPVREPV--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 195
Query: 85 SSYG--FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHF 133
S G +V++ + +S LAI L G+ + G PI V + A R + T G
Sbjct: 196 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGGPM 254
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
++VG L +T+ L F F + +M D TGRS+G+GF++F + E A+ A+
Sbjct: 255 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 314
Query: 194 LNGKWLGNRQIR 205
LNG L R +R
Sbjct: 315 LNGFELAGRPMR 326
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 182 (69.1 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 51/187 (27%), Positives = 98/187 (52%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDK-----SSYGFVDYFDRRSAALAI 102
S+++GN+ P + + F+ G + +LI+ DK + YGFV+ D + +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIR-DKITGKNAGYGFVELADDTAVERCL 61
Query: 103 VTLNGRHIFGQ--PIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV-FPTC 159
+NG+ + G P + + ++ ++ S F++FV DL+P+V D L+ F F +C
Sbjct: 62 RKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSC 121
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIRCNWAAKGATSGDE 218
+++ D G S+ GFVSF ++ + + A+ DL G LG + +R + A+ +
Sbjct: 122 CSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVNK--K 178
Query: 219 KQSSDSK 225
K+SS+++
Sbjct: 179 KESSENQ 185
WARNING: HSPs involving 845 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 417 374 0.00087 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1095
No. of states in DFA: 610 (65 KB)
Total size of DFA: 245 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.07u 0.14s 30.21t Elapsed: 00:00:02
Total cpu time: 30.13u 0.15s 30.28t Elapsed: 00:00:02
Start: Mon May 20 21:44:32 2013 End: Mon May 20 21:44:34 2013
WARNINGS ISSUED: 2