BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014839
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 177/293 (60%), Gaps = 22/293 (7%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAAL 100
D R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 101 AIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 220 QSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279
Q +++K L ED N+ +P+N TVY G ++S +T + + F
Sbjct: 184 QENNTKQ----------LRFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFS 226
Query: 280 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G I ++RV +KG+ FVR+STH AA AI N + G +KC WG +
Sbjct: 227 PF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 277
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 46/221 (20%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
ED ++VG+LS +VT+ + FS C +++ + + + FV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKS 246
A +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN----------------------- 95
Query: 247 NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFV 300
+ V+VG+LS E+T+ D+ F G I D RV +D KG+GFV
Sbjct: 96 ----------HFHVFVGDLSPEITTEDIKSAFAPF--GKISDARVVKDMATGKSKGYGFV 143
Query: 301 RYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 341
+ +A AI + L G+ I+ +W ++ PP ST
Sbjct: 144 SFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKST 183
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 39/310 (12%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---------------- 86
D R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 87 ---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSP 142
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSP
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 143 EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202
E+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 203 QIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYV 262
QIR NWA + + Q +++K L ED N+ +P+N TVY
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQ----------LRFED---VVNQSSPKN----CTVYC 226
Query: 263 GNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG 322
G ++S +T + + F G I ++RV +KG+ FVR+STH AA AI N + G
Sbjct: 227 GGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 284
Query: 323 KPIKCSWGSK 332
+KC WG +
Sbjct: 285 HVVKCYWGKE 294
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 59/236 (25%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELT 231
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN-------- 112
Query: 232 NGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 291
+ V+VG+LS E+T+ D+ F G I D RV
Sbjct: 113 -------------------------HFHVFVGDLSPEITTEDIKSAFAPF--GKISDARV 145
Query: 292 QRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 341
+D KG+GFV + +A AI + L G+ I+ +W ++ PP ST
Sbjct: 146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKST 200
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 171/299 (57%), Gaps = 33/299 (11%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273
+ S++K Q +E +++P TVY G ++S +T
Sbjct: 187 PAPKSTYESNTK-----------------QLSYDEVVSQSSPNNCTVYCGGVTSGLTEQL 229
Query: 274 LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
+ + F G I ++RV DKG+ FVR+S+H AA AI N + G +KC WG +
Sbjct: 230 MRQTFSPF--GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 35/213 (16%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
NG+ + ++++ NWA T +K+ + S +VV + + +
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV---------------------STQRS 102
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEA 308
+ V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 309 ALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 341
AIQ + L G+ I+ +W ++ PP ST
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWATR-KPPAPKST 192
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 171/299 (57%), Gaps = 33/299 (11%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273
+ S++K + E N+ +P N TVY G ++S +T
Sbjct: 187 PAPKSTYESNTKQLSY-------------DEVVNQSSPSN----CTVYCGGVTSGLTEQL 229
Query: 274 LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
+ + F G I ++RV DKG+ FVR+++H AA AI N + G +KC WG +
Sbjct: 230 MRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 35/213 (16%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
NG+ + ++++ NWA T +K+ + S +VV + + +
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV---------------------STQRS 102
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEA 308
+ V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 309 ALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 341
AIQ + L G+ I+ +W ++ PP ST
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWATR-KPPAPKST 192
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALA 101
++ R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A
Sbjct: 72 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA 131
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+ TLNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+
Sbjct: 132 LQTLNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 190
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
VMWD +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWAAK
Sbjct: 191 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+L +T+ L F V ++ ++M D K ++ + FV + DA A+ L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 135
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
NGK + N ++ NWA + Q+ S++D
Sbjct: 136 NGKQIENNIVKINWAFQ------------------------------SQQSSSDDT---- 161
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHA----LCVGTIEDVRVQRDKGFGFVRYSTHPEAAL 310
++VG+L+ V L F L + D++ +G+GFV +++ +A
Sbjct: 162 ---FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 218
Query: 311 AIQMGNARILCGKPIKCSWGSK 332
A+ + L G+P++ +W +K
Sbjct: 219 AMDSMQGQDLNGRPLRINWAAK 240
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 314
P+ TT Y+GN+ T DL F G I D + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 395
Query: 315 GNARILCGKPIKCSWGSK 332
G+ ++ WG +
Sbjct: 396 LANFPFQGRNLRTGWGKE 413
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-----FGFVRYSTHPEAALAIQ 313
+YVGNL +T L ++F G I ++++ DK + FV Y +A +A+Q
Sbjct: 76 VLYVGNLDKAITEDILKQYFQ--VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 133
Query: 314 MGNARILCGKPIKCSW 329
N + + +K +W
Sbjct: 134 TLNGKQIENNIVKINW 149
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 150/295 (50%), Gaps = 15/295 (5%)
Query: 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAI 102
R++++G++ V L FS TG L K+I+ + YGF+++ +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 103 VTLNGRHIFGQPI--KVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV-FPT 158
T NG + G + ++NWA + S Q+ D ++FVGDL+P+VTD L F V + +
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TGRS+G+GFV F + + A+ ++NG + R +R + A G +
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQ 202
Query: 219 KQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 278
+Q V + ++V A ++ PE++ TT+ V NL VT +L + F
Sbjct: 203 QQ-----YVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAF 257
Query: 279 HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333
L G + V++ KG+G+V++ T P A A+Q +++ + ++ SW P
Sbjct: 258 SQL--GEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKDKS----SYGFVDYFDR 95
+ DA S++VG++ P VT+ LLQE F + G K++ + YGFV + +
Sbjct: 109 KVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEE 168
Query: 96 RSAALAIVTLNGRHIFGQPIKVN--------------------------------WAYAS 123
A+ +NG + +P++++ AY +
Sbjct: 169 SERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVA 228
Query: 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN 183
D + + V +L VT+ L FS V++ K ++G+G+V F+
Sbjct: 229 PPESDVTCT-TISVANLDQNVTEEELKKAFSQL-----GEVIY-VKIPATKGYGYVQFKT 281
Query: 184 QEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
+ A+ A+ + G+ +G + +R +W+ G
Sbjct: 282 RPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDG 314
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 157/297 (52%), Gaps = 23/297 (7%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++++G++ + + L FS G + K+I+ ++ YGFV++ +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 104 TLNGRHI--FGQPIKVNWAYASS--QREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+ NG + QP ++NWA S+ +R +T F++FVGDL+ +VTD L F S +P+
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TG S+G+GFV F ++ + A+ ++NG + +R +R A S E
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 219 KQSSDSKSVVELTNGISVLFAEDG--QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276
+ SS + V L+ G +A +G S D +N TT++VG L SEVT +L +
Sbjct: 264 QYSSQA---VILSGG----YASNGAATHGSQSDGDSSN---TTIFVGGLDSEVTDEELRQ 313
Query: 277 HFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333
F+ G + V++ KG GFV++S A AIQ + I+ + ++ SWG P
Sbjct: 314 SFNQF--GEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSP 368
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 42/219 (19%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSS----YGFVDYFDR 95
R + + S++VG++ VT+ +L++ F+S P L+G K++ + YGFV + D
Sbjct: 170 RAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDE 229
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWA---------------------YAS-------SQRE 127
+ A+ +NG + + +++ A YAS SQ +
Sbjct: 230 SERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSD 289
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
S + +FVG L EVTD L F+ F ++ +G GFV F ++ A
Sbjct: 290 GDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSDRSSA 343
Query: 188 QSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKS 226
Q AI L+G +G + +R +W G + +++ +DS S
Sbjct: 344 QEAIQKLSGAIIGKQAVRLSW---GRSPANKQMRTDSGS 379
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 150/304 (49%), Gaps = 19/304 (6%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRR 96
R ++++VG++ + L FS TG + K+I+ +S YGFV++ R
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160
Query: 97 SAALAIVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFA 151
+A + +G + QP ++NWA S+ +R +G +VFVGDLSP+VTD L
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 152 CFS-VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
FS +P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + NRQ+R A
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280
Query: 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVT 270
+++Q S ++ +G + Q D N T++VG + +V
Sbjct: 281 PKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQ----SDGESTN---ATIFVGGIDPDVI 333
Query: 271 SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330
DL + F G + V++ KG GFV+++ A AI+ N ++ ++ SWG
Sbjct: 334 DEDLRQPFSQF--GEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 391
Query: 331 SKPT 334
P
Sbjct: 392 RSPN 395
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIV 103
ST +++VG I P V + L++ FS G + K+ + K GFV + DR+SA AI
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK---GCGFVQFADRKSAEDAIE 374
Query: 104 TLNGRHIFGQPIKVNWAYASSQ--REDTSGHFN 134
+LNG I ++++W + ++ R D+ +N
Sbjct: 375 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 155/299 (51%), Gaps = 28/299 (9%)
Query: 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAI 102
++++VG++ + L FS T + K+I+ ++ YGFV++ R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 103 VTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACFS-VF 156
+ +G + QP ++NWA S+ +R +G ++FVGDL+P+V+DA L F+ +
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA--KGAT 214
P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + +RQ+R A + A
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 215 SGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDL 274
G Q + S+++ L G S D NN +T++VG L ++VT DL
Sbjct: 298 YG---QQNGSQAL--------TLAGGHGGNGSMSDGESNN---STIFVGGLDADVTEEDL 343
Query: 275 HRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333
+ F G + V++ KG GFV+++ A AI N ++ ++ SWG P
Sbjct: 344 MQPFSDF--GEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIV 103
S +++VG + VT L + FS G + K+ + K GFV + +R+SA AI
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK---GCGFVQFANRQSAEEAIG 380
Query: 104 TLNGRHIFGQPIKVNWAYASSQ--REDTSGHFN 134
LNG I ++++W + ++ R D+ +N
Sbjct: 381 NLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWN 413
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 147/298 (49%), Gaps = 33/298 (11%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++H + A L F+S E K+I+ + YGFV++ A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS---QREDTSGHFNVFVGDLSPEVTDATLFACFS-V 155
+ NG + QP ++NWA S+ + E+ ++FVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 216 GDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
G ++Q + NG PE + TT++VG L S VT DL
Sbjct: 281 GYQQQGG------YMPNGTLT-------------RPEGDIMNTTIFVGGLDSSVTDEDLK 321
Query: 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333
+ F+ G I V++ KG GFV++ P A A++ N ++ + ++ SWG P
Sbjct: 322 QPFNEF--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 377
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
S++VG++ P V++ LL E FS P ++ K++ + YGFV + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 104 TLNGRHIFGQPIKVNWAYAS-----------------SQREDTSGHFNVFVGDLSPEVTD 146
+NG + +++ A ++ E + +FVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L F+ F ++ +G GFV F N+ +A+ A+ LNG +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 207 NWAAKGAT 214
+W A
Sbjct: 372 SWGRNPAN 379
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+++VG + VT+ L++ F+ G + K+ + K GFV + +R +A A+ LNG
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK---GCGFVQFVNRPNAEEALEKLNG 361
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
I Q ++++W + ++ + N +V
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGNQWV 391
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------G 296
Q + N+ N + T++VG+L + L+ F + I V+V R+K G
Sbjct: 86 QSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEG 145
Query: 297 FGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGS 331
+GFV + +H A ++ N + +P + +W S
Sbjct: 146 YGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS 182
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAA 99
A RS+++G++ P + L VF TG K+I+ ++ Y GF+++ + +A
Sbjct: 76 AGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAE 135
Query: 100 LAIVTLNGRHIFG--QPIKVNWAY--ASSQREDTSGHFNVFVGDLSPEVTDATLFACF-S 154
+ T NG + Q ++NWA A +R+ VFVGDL+P+VTD L F +
Sbjct: 136 RNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKA 195
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214
V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ +R +R AA
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAA---- 251
Query: 215 SGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDL 274
++K + + + T G ++ E++P TT++VG + VT DL
Sbjct: 252 --NKKPLTMQPASYQNTQG---------------NSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 275 HRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334
F G + V++ K GFV+Y+ A A+ + N L G+ I+ SWG P+
Sbjct: 295 KSVFGQF--GELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPS 352
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+++GDL P + + L F + + A+V+ +++ G S G+GF+ F N A+ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 195 NGKWLGNRQ--IRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPE 252
NG + + + R NWA GA G+ +Q+ + PE
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGA--GERRQA---------------------------EGPE 172
Query: 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHAL-----CVGTIEDVRVQRDKGFGFVRYSTHPE 307
+ TV+VG+L+ +VT L F A+ + D R KG+GFVR++ E
Sbjct: 173 H-----TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESE 227
Query: 308 AALAIQMGNARILCGKPIKCSWGSKPTPPGTSSTPLPPPPAPH 350
A+ N + +P++ T P + PL PA +
Sbjct: 228 QIRAMTEMNGQYCSSRPMR-------TGPAANKKPLTMQPASY 263
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
T +++VG + VT L+ VF G L K+ + GFV Y +R A A+ L
Sbjct: 276 TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC--GFVQYANRACAEQALSVL 333
Query: 106 NGRHIFGQPIKVNWAYASSQRE 127
NG + GQ I+++W + S ++
Sbjct: 334 NGTQLGGQSIRLSWGRSPSNKQ 355
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 148/301 (49%), Gaps = 32/301 (10%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAA 99
AS +S+++G++ + + VF+ +G K+I+ YGF+++ A
Sbjct: 56 ASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAE 115
Query: 100 LAIVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACF- 153
+ T NG + Q ++NWA A + +R T G +FVGDL+PEVTD L F
Sbjct: 116 RVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFK 175
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ R +R AA
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA--- 232
Query: 214 TSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273
+K+ + + + Q +A +N+P TT++VG L + VT +
Sbjct: 233 ----------NKNALPMQPAMY-------QNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 274 LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333
L F G + V++ K GFV+Y+ A A+ + N L G+ I+ SWG P
Sbjct: 276 LKSIFGQF--GELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP 333
Query: 334 T 334
Sbjct: 334 N 334
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 49 SVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++VG++ P+VT+ +L + F + G ++G K++ + YGFV + D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 104 TLNGRHIFGQPIKVNWA------------YASSQR----EDTSGHFNVFVGDLSPEVTDA 147
+NG++ +P+++ A Y ++Q ++ + +FVG L VTD
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 148 TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207
L + F F ++ ++ G FV + N+ A+ A++ LNG LG + IR +
Sbjct: 275 ELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Query: 208 WAAKGATSGDEKQ 220
W D+ Q
Sbjct: 329 WGRSPNKQSDQAQ 341
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 152/326 (46%), Gaps = 44/326 (13%)
Query: 20 YHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL 79
++P A P ++P A R++++G++ + L F+ TG + K+
Sbjct: 43 WNPQAAAPPSVQPTT---------ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKV 93
Query: 80 IKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASS-QREDTSG 131
I+ ++ YGF+++ +A + T N I P ++NWA SS + D S
Sbjct: 94 IRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP 153
Query: 132 HFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190
+ +FVGDL+ +VTD L F + +P+ A+V+ D+ TGR++G+GFV F ++ + A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 191 INDLNGKWLGNRQIRCNWAA--KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNE 248
+ ++NG R +R AA KG T + S + V
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTT------------------- 254
Query: 249 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEA 308
+N+P TTV+VG L + VT L F G I V++ K GFV++S A
Sbjct: 255 ---DNDPNNTTVFVGGLDASVTDDHLKNVFSQY--GEIVHVKIPAGKRCGFVQFSEKSCA 309
Query: 309 ALAIQMGNARILCGKPIKCSWGSKPT 334
A++M N L G ++ SWG P+
Sbjct: 310 EEALRMLNGVQLGGTTVRLSWGRSPS 335
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR 108
+V+VG + VT+ L+ VFS G + K+ + GFV + ++ A A+ LNG
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC--GFVQFSEKSCAEEALRMLNGV 319
Query: 109 HIFGQPIKVNWAYASSQRE 127
+ G ++++W + S ++
Sbjct: 320 QLGGTTVRLSWGRSPSNKQ 338
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 33/298 (11%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++ + A L F+S E K+I+ + YGFV++ A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS---QREDTSGHFNVFVGDLSPEVTDATLFACFS-V 155
+ NG + QP ++NWA S+ + E+ ++FVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 216 GDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
G ++Q + G +E N TT++VG L S VT DL
Sbjct: 283 GYQQQGG---------------YMPSGAFTRSEGDTIN----TTIFVGGLDSSVTDEDLK 323
Query: 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333
+ F G I V++ KG GFV++ P A A++ N ++ + ++ SWG P
Sbjct: 324 QPFSEF--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 379
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+++VG + VT+ L++ FS G + K+ + K GFV + +R +A A+ LNG
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK---GCGFVQFVNRPNAEEALEKLNG 363
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
I Q ++++W + ++ + N +V
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGNQWV 393
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 243 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------G 296
Q + N+ N + T++VG+L + + L+ F + I ++V R+K G
Sbjct: 88 QSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEG 147
Query: 297 FGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGS 331
+GFV + +H A +Q N + +P + +W S
Sbjct: 148 YGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWAS 184
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 30/313 (9%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDY 92
N P + + RS+++G++ + L F TG L K+I+ ++ YGF+++
Sbjct: 73 NPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEF 132
Query: 93 FDRRSAALAIVTLNGRHI--FGQPIKVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATL 149
+A + T NG + Q ++NWA + +R D S +FVGDL+ +VTD L
Sbjct: 133 RSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYIL 192
Query: 150 FACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208
F SV+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG R +R
Sbjct: 193 QETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGP 252
Query: 209 AAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSE 268
AA G ++++ + T G E++P TT++VG L
Sbjct: 253 AANKKPVGTPQKATYQNP--QATQG------------------ESDPNNTTIFVGGLDPT 292
Query: 269 VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
V L + F G + V++ K GFV++ T A A+ N L G+ I+ S
Sbjct: 293 VAEEHLRQVFSPY--GELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLS 350
Query: 329 WGSKPTPPGTSST 341
WG P+ T T
Sbjct: 351 WGRSPSSKQTDQT 363
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 141/304 (46%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +GRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
E+QS + F + QE+ N Q +YV NL +
Sbjct: 270 I----ERQSELKRK-----------FEQIKQERINRY------QGVNLYVKNLDDGIDDD 308
Query: 273 DLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F L GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 132/296 (44%), Gaps = 51/296 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S SY ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F E A AI +NG L +R++
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF------------ 173
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
S+ EL G V+ ++T VY+ N ++ L F A
Sbjct: 174 -KSRRERELEYGAKVM------------------EFTNVYIKNFGEDMDDKRLREIFSAF 214
Query: 282 CVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G V+V R +GFGFV Y H EA A+ N + + G+ I K
Sbjct: 215 --GNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 24/298 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVT 104
++++G + P VT A +Q+V+++ G KLI+ + Y FV++ A+ A+ +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 105 LNGRHIFG--QPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+N + I G K+NWA RE + + +++FVGDLSP V + +++ F S + +
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
C A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G+R IR A + +
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA--- 269
Query: 219 KQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPE-NNPQYTTVYVGNLSSEVTSVDLHRH 277
V N + V G + + P+ + +TV+VG LS V+ +L
Sbjct: 270 -------HVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYL 322
Query: 278 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335
F G I V++ KG GFV++ A +AI L I+ SWG P
Sbjct: 323 FQNF--GEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNP 378
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180
Y SS+ E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 181 FRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFA 239
F + +A SA++ N G N + NWA+ G
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGL------------------------- 175
Query: 240 EDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH-----RHFHALCVGTIEDVRVQRD 294
+EKS A E +++VG+LS V D++ R+ + D +
Sbjct: 176 ---REKSISKASE-----YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVS 227
Query: 295 KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327
+G+GFVR++ + A+ +I +PI+
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 139/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D TGRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
+E + F + QE+ N Q +YV NL +
Sbjct: 270 ---------------IERQGELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDD 308
Query: 273 DLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPY--GTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 132/296 (44%), Gaps = 51/296 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F QE A AI +NG L +R++
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF------------ 173
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
S+ EL G V+ ++T VY+ N ++ L F A
Sbjct: 174 -KSRRERELEYGAKVM------------------EFTNVYIKNFGEDMDDKRLREIFSAF 214
Query: 282 CVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G V+V R +GFGFV Y H EA A+ N + + G+ I K
Sbjct: 215 --GNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 131/295 (44%), Gaps = 49/295 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGEDMDDERLKELFGKF 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
AL V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 131/295 (44%), Gaps = 49/295 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGEDMDDERLKELFGKF 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
AL V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 144/300 (48%), Gaps = 26/300 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAI 102
++++G++ P + +Q++++S K+++ SS Y FV + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 103 VTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SV 155
+ N I G K+NWA + + F++FVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+C+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA------ 259
Query: 216 GDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275
S S++ + + + ++ + N+D +P TTV+VG L+S ++ DL
Sbjct: 260 -----SPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQ 314
Query: 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335
F G I ++++ KG GFV+YS A AI ++ I+ +WG P
Sbjct: 315 VCFQPF--GRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHNTLP 372
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 130/295 (44%), Gaps = 49/295 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP T A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGEDMDDERLKDLFGKF 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
AL V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 131/295 (44%), Gaps = 49/295 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGEDMDDERLKDLFGKF 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
AL V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 131/295 (44%), Gaps = 49/295 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGEDMDDERLKDLFGKF 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
AL V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 138/304 (45%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +GRSRGFGFV++ N E+AQ A+ ++NGK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
+E + F + QE+ N Q +YV NL +
Sbjct: 270 ---------------IERQGELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDD 308
Query: 273 DLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFSPY--GTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 132/296 (44%), Gaps = 51/296 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F QE A AI +NG L +R++
Sbjct: 128 CKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF------------ 173
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
S+ EL G V+ ++T VY+ N ++ L F A
Sbjct: 174 -KSRRERELEYGAKVM------------------EFTNVYIKNFGEDMDDKRLKEIFSAF 214
Query: 282 CVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G V+V R +GFGFV Y H EA A+ N + + G+ + K
Sbjct: 215 --GNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 136/304 (44%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + N L + S+ G + C ++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + G+ + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRTFEQMKQDRITRY------QVVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 128/295 (43%), Gaps = 49/295 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + LI S+Y +V++ + A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+FV +L + + L+ S F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
V+ D+ S+G+GFV F E A+ AI +NG L R++ S E+++
Sbjct: 128 CNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQ----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E N VY+ N ++ L F
Sbjct: 182 ELGARAKEFPN---------------------------VYIKNFGEDMDDERLKDLFGKF 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
AL V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 255 PQYTT--VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHP 306
P Y T +YVG+L +VT L+ F G I +R+ RD + +V +
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSP--AGPILSIRICRDLITSGSSNYAYVNFQHTK 63
Query: 307 EAALAIQMGNARILCGKPIKCSWGSK 332
+A A+ N ++ GKP++ W +
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQR 89
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 51/287 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPL---EGCKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N + GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ SRGFGFV F E AQ AIN +NG L +R++ S E+++
Sbjct: 128 CKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH----FKSRREREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
+E TN +YV NL +V L F
Sbjct: 182 ELGARALEFTN---------------------------IYVKNLPVDVDEQGLQDLFSQF 214
Query: 282 CVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 323
G + V+V RD + FGFV + H EA A+ N + + G+
Sbjct: 215 --GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 131/302 (43%), Gaps = 31/302 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK+ + S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G N++V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +G SR FGFV+F E+AQ A+ +NGK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE N + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQNELKRRFEQMKQDRLRRY------QGVNLYVKNLDDSIDDD 308
Query: 273 DLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330
L + F V T V + KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 KLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 331 SK 332
+
Sbjct: 369 QR 370
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 259 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 314
++YVG+L +VT L+ F L + DV +R G+ ++ + +A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 315 GNARILCGKPIKCSWGSK 332
N +L G+PI+ W +
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVGTKPLYVALAQRKEERK 375
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 51/289 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+ FV F QE A AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
E TN VY+ N EV L F
Sbjct: 182 ELGAKAKEFTN---------------------------VYIKNFGEEVDDESLKELFSQF 214
Query: 282 CVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
G V+V RD KGFGFV Y H +A A++ N + + GK I
Sbjct: 215 --GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 136/304 (44%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + EV D +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
E+Q+ + +L QE+ + Q +Y+ NL +
Sbjct: 270 V----ERQAELKRKFEQLK-----------QERISRY------QGVNLYIKNLDDTIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F G+I +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 KLRKEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 259 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 314
++YVG+L S+VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 315 GNARILCGKPIKCSWGSK 332
N ++ GKPI+ W +
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++Y+ N+ + + L++ FS G + K++ +D S +GFV + A A+ +N
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVGSKPLYVALAQRKEERK 375
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 128/284 (45%), Gaps = 54/284 (19%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P +T ALL +VFS GP+ ++ + K Y +V+Y D + AI
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 105 LNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN I G+P ++ W+ + R+ SG N+F+ +L P + + L FS F +
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
V D+ G SRGFGFV F+ + DA+ AI +NG
Sbjct: 169 VALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGM-------------------------- 201
Query: 224 SKSVVELTNGISVLFAEDGQEKSN----EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279
L NG+ V A +K E+A N +T +YV N+ E T + + F
Sbjct: 202 ------LMNGLEVYVAMHVPKKDRISKLEEAKAN---FTNIYVKNIDVETTDEEFEQLFS 252
Query: 280 ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 318
G I +++D KGFGFV + H AA A++ N +
Sbjct: 253 QY--GEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGK 294
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 37/297 (12%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L E FS+ G + CK+ + + +GFV + + A AI +
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + G + V R E+ +F N++V ++ E TD FS +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D + G+ +GFGFV+F + A A+ +LNGK ++ + A K +E +
Sbjct: 259 SAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELK 317
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E Q +++ NL + L F
Sbjct: 318 KQYEQYRLEKLAKF---------------------QGVNLFIKNLDDSIDDEKLKEEFAP 356
Query: 281 LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
GTI RV RD KGFGFV +S+ EA A+ N +I+ GKP+ + +
Sbjct: 357 Y--GTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQR 411
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTH 305
ENN ++YVG L +T L+ F L G I +RV RD G+ +V Y+ +
Sbjct: 46 ENN--NASLYVGELDPNITEALLYDVFSPL--GPISSIRVCRDAVTKASLGYAYVNYTDY 101
Query: 306 PEAALAIQMGNARILCGKPIKCSWGSK 332
AIQ N + G+P + W +
Sbjct: 102 EAGKKAIQELNYAEINGRPCRIMWSER 128
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 134/304 (44%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +VM D G+SRGFGFVSF EDAQ A++D+NGK L + I A K
Sbjct: 211 FGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F G+I +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEFTPF--GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 131/288 (45%), Gaps = 49/288 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF--- 278
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGEDMDDERLKEWFGQY 214
Query: 279 -HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
AL V + D + +GFGFV + H +A A+ N + L GK I
Sbjct: 215 GAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 259 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 314
++YVG+L +VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 315 GNARILCGKPIKCSWGSK 332
N ++ GKP++ W +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F+ G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 35/304 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +VM D G+S+GFGFVSF EDAQ A++++NGK + + + A K
Sbjct: 211 FGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
VE + F + Q++ Q +YV NL +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDE 308
Query: 273 DLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328
L + F L GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ +
Sbjct: 309 RLRKEF--LPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 329 WGSK 332
+
Sbjct: 367 LAQR 370
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 49/286 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-- 279
E TN VY+ N ++ L F
Sbjct: 182 ELGARAKEFTN---------------------------VYIKNFGDDMNDERLKEMFGKY 214
Query: 280 --ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK 323
AL V + D + KGFGFV + H +A A+ N + + GK
Sbjct: 215 GPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 259 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 314
++YVG+L +VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 315 GNARILCGKPIKCSWGSK 332
N ++ G+P++ W +
Sbjct: 72 MNFDVIKGRPVRIMWSQR 89
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 54/298 (18%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ P V+ A L ++FS G + ++ I K Y +V++ D +A AI
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+ ++ W SQR+ + G N+F+ +L P++ + L+ FSVF
Sbjct: 96 LNFTPIKGKLCRIMW----SQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
++V D+ TG+S+GFG+V F E A AI+ LNG L ++I G
Sbjct: 152 SKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV---------GPHLSK 201
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
+ +S E E +T VY+ N+++E T + F L
Sbjct: 202 KERESKFE----------------------EMKANFTNVYIKNINTETTD----KEFEEL 235
Query: 282 CV--GTIEDVRVQR-----DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G + V ++R +KGFGFV + H +A ++ N G+P+ + K
Sbjct: 236 VAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 127/299 (42%), Gaps = 37/299 (12%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRR 96
P ++++ N+HP + N L + FS G + K+ + +G+V + +
Sbjct: 115 PSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDE 174
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFA 151
SA+ AI LNG + GQ I V + +RE + +F NV++ +++ E TD
Sbjct: 175 SASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEE 234
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ F +D+ V+ G ++GFGFV+F N EDA + +LN + + N A K
Sbjct: 235 LVAKFGK-TDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Query: 212 GATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTS 271
E + + +E Q +++ NL +
Sbjct: 294 KYERQQELKKQYEATRMEKMAKY---------------------QGINLFIKNLDDSIDD 332
Query: 272 VDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
L F GTI +V + KGFGFV +ST EA AI N +I+ GKP+
Sbjct: 333 KKLEEEFAPY--GTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 389
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 129/301 (42%), Gaps = 50/301 (16%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAA 99
A S+YVG ++P V A L E+FS G + ++ + K Y +V+Y
Sbjct: 63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGE 122
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVF 156
AI LN + G+P ++ W SQR+ + SG N+F+ +L P + + L FS F
Sbjct: 123 KAIEELNYTPVEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAF 178
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
+V D G+S+ FGFV + +E AQ+AI +NG L +R++ G
Sbjct: 179 GKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV---------G 228
Query: 217 DEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276
D +S +E E YT +YV N+ T +
Sbjct: 229 KHVSKKDRESKLE----------------------EMKANYTNIYVKNIDLAYTEKEFEE 266
Query: 277 HFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331
F G I + +++D KGFGFV + H AA A++ N + + G+ I
Sbjct: 267 LFAPF--GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 332 K 332
K
Sbjct: 325 K 325
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 135/308 (43%), Gaps = 43/308 (13%)
Query: 43 DASTCRS----VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDR 95
D S RS +++ N+HP + N L + FS+ G + K+ D +GFV Y
Sbjct: 146 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETE 205
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLF 150
+A AI ++NG + + + V + RE + + N++V ++ T+
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ F + + D + G+S+GFGFV+F E A A+ +LN K + ++I A
Sbjct: 266 ELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 211 KGATSGDE-KQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEV 269
K +E K+ ++ + +L+ Q ++V NL ++
Sbjct: 325 KKRERTEELKKQYEAVRLEKLSKY----------------------QGVNLFVKNLDEQI 362
Query: 270 TSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKP 324
S L F GTI +V D KGFGFV +ST EA AI N R++ GKP
Sbjct: 363 DSEKLEEEFKPF--GTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKP 420
Query: 325 IKCSWGSK 332
+ + +
Sbjct: 421 LYVALAQR 428
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+++V N+ Q+ + L+E F G + K++ D +GFV + A AI +
Sbjct: 352 NLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEM 411
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N R + G+P+ V A +QR+D
Sbjct: 412 NQRMVNGKPLYV----ALAQRKDV 431
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 46/298 (15%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAAL 100
++ S+YVG++ P V+ A L ++FS G + ++ I K Y +V++ D +
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 101 AIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
AI LN I G+ ++ W+ S R+ SG N+F+ +L P++ + L+ FSVF
Sbjct: 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDI 152
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
+++ D+ G+S+GFGFV F + A+ AI+ LNG L ++I + A + +
Sbjct: 153 LSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI---YVAPHLS----R 204
Query: 220 QSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279
+ DS+ E YT +YV N++SE T F
Sbjct: 205 KERDSQ------------------------LEETKAHYTNLYVKNINSETTDEQFQELFA 240
Query: 280 ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G I +++D KGFGFV Y H +A A++ N L G+ + K
Sbjct: 241 KF--GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 127/292 (43%), Gaps = 41/292 (14%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS G + K+ + +GFV + + +A AI L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 106 NGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + GQ I V + SQ E+T H+ N++V +++ E TD F+ F
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D G+ +GFGFV++ EDA A+ LN L ++ A K
Sbjct: 247 SASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK--------- 296
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTV--YVGNLSSEVTSVDLHRHF 278
++ V++ L E +Y V +V NL V L F
Sbjct: 297 KNERMHVLKKQYEAYRL--------------EKMAKYQGVNLFVKNLDDSVDDEKLEEEF 342
Query: 279 HALCVGTIEDVRVQR-----DKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
GTI +V R KGFGFV +ST EA AI N +I+ GKP+
Sbjct: 343 APY--GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++YV NI+ + T+ QE+F+ GP+ L K +GFV+Y A A+ L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 106 NGRHIFGQPIKVNWAYASSQR-------------EDTSGH--FNVFVGDLSPEVTDATLF 150
N + G+ + V A ++R E + + N+FV +L V D L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ + T + A+VM + G+S+GFGFV F E+A AI + N + + + + A
Sbjct: 340 EEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 211 K 211
+
Sbjct: 399 R 399
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+++V N+ V + L+E F+ G + K+++ + +GFV + A AI
Sbjct: 323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N + + G+P+ V A +QR+D
Sbjct: 383 NQQIVAGKPLYV----AIAQRKDV 402
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 39/298 (13%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS+ G + CK+ + +GFV Y +A AI +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENV 206
Query: 106 NGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + RE + +F NV+V +L+PEV +A F F +
Sbjct: 207 NGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVT 266
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-K 219
+ DQ+ G+SRGFGFV+F N E A +A+ ++N K + +++ A K DE K
Sbjct: 267 SVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELK 325
Query: 220 QSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279
+ +S + +L+ Q ++V NL + S L F
Sbjct: 326 RLYESTRLEKLSKY----------------------QGVNLFVKNLDDSIDSEKLEEEFK 363
Query: 280 ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
GTI RV D KGFGFV +S+ EA AI N R++ GKP+ + +
Sbjct: 364 PF--GTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 50/295 (16%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTL 105
+YVG ++P V ALL E+FS G + ++ + K Y +V++ + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N + G+P ++ W SQR+ + +G N+F+ +L P + + L FS F
Sbjct: 120 NYSLVDGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSC 175
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D+ G+S+ FGFV + E A++AI ++NG L +R++ G
Sbjct: 176 KVATDE-LGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV---------GKHVSKR 225
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 282
D +S E E +T VYV NL+ EV + F
Sbjct: 226 DRESKFE----------------------EMKANFTNVYVKNLAPEVDNAKFEEIFKPF- 262
Query: 283 VGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G + V ++ D +GFGFV + H A A++ N + + G+ + K
Sbjct: 263 -GPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+++V N+ + + L+E F G + +++ D +GFV + A AI +
Sbjct: 343 NLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N R I G+P+ V A +QR+D
Sbjct: 403 NQRMIQGKPLYV----ALAQRKDV 422
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 52/326 (15%)
Query: 21 HPSLLAAPQIEPILSGN--LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCK 78
+P+ +AP++ + S + P + S+YVG + P VT A+L E+FSS G + +
Sbjct: 23 NPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 79 L----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE---DTSG 131
+ + + Y +V+Y + A+ LN I G+P ++ W SQR+ +G
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTG 138
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAI 197
Query: 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAP 251
+NG L ++++ G D +S E
Sbjct: 198 KHVNGMLLNDKKVFV---------GHHISKKDRQSKFE---------------------- 226
Query: 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHP 306
E +T VY+ N+ EVT + + F G I + RD +GFGFV +STH
Sbjct: 227 EMKANFTNVYIKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 307 EAALAIQMGNARILCGKPIKCSWGSK 332
A A+ N + + G+ + K
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQK 310
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 137/342 (40%), Gaps = 82/342 (23%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ ++ EVTD F F +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F + AQ+A++++N K + +++ A K +E +
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E + Q +YV NL+ +V L F
Sbjct: 320 KQYEAARLEKASKY---------------------QGVNLYVKNLTDDVDDEKLRELFSP 358
Query: 281 LCVGTIEDVRVQRD---------------------------------------------- 294
GTI +V RD
Sbjct: 359 F--GTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKI 416
Query: 295 ----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 417 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 458
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGIS 235
++ ++ N +S
Sbjct: 191 AERLLAAQNPLS 202
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 45/204 (22%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK---------------------NLDVGAN- 101
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEA 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ +
Sbjct: 102 -----IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDAS 155
Query: 309 ALAIQMGNARILCGKPIKCSWGSK 332
AI+ N + LC +PI S+ K
Sbjct: 156 DAAIEAMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 309
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 310 LAIQMGNARILCGKPIKCSWGS 331
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGIS 235
++ ++ N +S
Sbjct: 191 AERLLAAQNPLS 202
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 45/204 (22%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK---------------------NLDVGAN- 101
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEA 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ +
Sbjct: 102 -----IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDAS 155
Query: 309 ALAIQMGNARILCGKPIKCSWGSK 332
AI+ N + LC +PI S+ K
Sbjct: 156 DAAIEAMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 309
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 310 LAIQMGNARILCGKPIKCSWGS 331
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGIS 235
++ ++ N +S
Sbjct: 191 AERLLAAQNPLS 202
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 45/204 (22%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK---------------------NLDVGAN- 101
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEA 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ +
Sbjct: 102 -----IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDAS 155
Query: 309 ALAIQMGNARILCGKPIKCSWGSK 332
AI+ N + LC +PI S+ K
Sbjct: 156 DAAIEAMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 309
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 310 LAIQMGNARILCGKPIKCSWGS 331
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDR 95
P A T S+YVG + P VT A+L E+F+S GP+ ++ + + Y +V++ +
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFAC 152
A+ LN I G+P ++ W SQR+ + G NVF+ +L P + + L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMW----SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +V D+ G ++G+GFV F + E A +AI +NG L ++++
Sbjct: 188 FSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH---- 242
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
S E+QS + L A +T VY+ NL +E+T
Sbjct: 243 HVSRRERQSK-----------VEALKA----------------NFTNVYIKNLDTEITEQ 275
Query: 273 DLHRHFHALC-VGTIEDVRVQRDK--GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329
+ F + ++ V+ Q DK GFGFV Y+ H A A+ N + GK +
Sbjct: 276 EFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGR 335
Query: 330 GSK 332
K
Sbjct: 336 AQK 338
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 37/297 (12%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ P + N L + FS+ G + CK+ + YGFV + SA AI +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + +R E +F NV++ +L E+T+ F F +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
++ DQ + RGFGFV++ N E AQ A+++LN K +++ A K +E +
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E N Q +++ NL EV L F A
Sbjct: 348 KRYEQMKLEKMNKY---------------------QGVNLFIKNLQDEVDDERLKAEFSA 386
Query: 281 LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
GTI ++ D KGFGFV Y+T EA A+ N R+L GKP+ + +
Sbjct: 387 F--GTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+ +V + L+ FS+ G + K++ ++ +GFV Y A A+ +
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 106 NGRHIFGQPIKVNWAYASSQR 126
N R + G+P+ V A R
Sbjct: 425 NQRMLAGKPLYVALAQRKEVR 445
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 112/215 (52%), Gaps = 11/215 (5%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG + +V+ ++L E+ GP+ + + + +GFV++ A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-R 163
LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G E+ +
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKG-ERHGTA 190
Query: 224 SKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYT 258
++ ++ N LF +D + D P P T
Sbjct: 191 AERMLAAQN---PLFPKDRPHQVFSDVPLGVPANT 222
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 87/232 (37%), Gaps = 54/232 (23%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG L +V+++ L+ + D+ T +GFGFV F +EDA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
N L + I+ N A S EK N D N
Sbjct: 75 NMIKLYGKPIKVNKA-----SAHEK---------------------------NMDVGAN- 101
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCV-----GTIEDVRVQRDKGFGFVRYSTHPEAA 309
++VGNL EV L+ F A V + DV KGF F+ +++ +
Sbjct: 102 -----IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASD 156
Query: 310 LAIQMGNARILCGKPIKCSWGSKPTPPG-----------TSSTPLPPPPAPH 350
A++ N + LC + I S+ K G + PL P PH
Sbjct: 157 TALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPH 208
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 309
Q T+YVG L +V+ L + G + V + +D+ GFGFV + +A
Sbjct: 11 QDATIYVGGLDEKVSESILWELM--VQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68
Query: 310 LAIQMGNARILCGKPIKCSWGS 331
AI++ N L GKPIK + S
Sbjct: 69 YAIKILNMIKLYGKPIKVNKAS 90
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 50/296 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 113 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 169 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 218
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
D +S E E +T VY+ N+ EVT + + F
Sbjct: 219 KDRQSKFE----------------------EMKANFTNVYIKNIDQEVTDEEFRKMFEKF 256
Query: 282 CVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G I + RD +GFGFV +STH A A+ N + + G+ + K
Sbjct: 257 --GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 137/344 (39%), Gaps = 84/344 (24%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ ++ EVTD F F +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F + AQ+A++++N K + +++ A K +E +
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E + Q +YV NL+ +V L F
Sbjct: 320 KQYEAARLEKASKY---------------------QGVNLYVKNLTDDVDDEKLRELFSP 358
Query: 281 LCVGTIEDVRVQRD---------------------------------------------- 294
GTI +V RD
Sbjct: 359 F--GTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEK 416
Query: 295 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 417 KILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 460
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 308
P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+ +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 309 ALAIQMGNARILCGKPIKCSWGSK 332
A++ N ++ GKP + W +
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQR 130
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 47/314 (14%)
Query: 29 QIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDK 84
Q P + + P+ + S S+YVG + P V+ ALL ++FS G + ++ I
Sbjct: 20 QTAPTTTESETPKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTS 78
Query: 85 SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPE 143
Y +V++ D + AI LN I G+P ++ W+ S R+ SG N+++ +L P
Sbjct: 79 LGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPA 136
Query: 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
+ + +L FS F +V D+ G SRGFGFV F N+ DA+ AI ++G + +++
Sbjct: 137 IDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQE 195
Query: 204 IRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVG 263
+ D +S +E E ++T VYV
Sbjct: 196 VYVALHVS---------KKDRQSKLE----------------------EVKAKFTNVYVK 224
Query: 264 NLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 318
N+ E + + F G I +++D +GFGFV + H AA A+ N
Sbjct: 225 NIDQETSQEEFEELFGKY--GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNEL 282
Query: 319 ILCGKPIKCSWGSK 332
G+ + K
Sbjct: 283 EFKGQKLYVGRAQK 296
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTL 105
++Y+ N+HP + N L E FS+ G + CK+ + +GFV + + A AI +
Sbjct: 127 NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAV 186
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
+G + Q + V + R E+ F NV+V ++ E + F + +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKIT 246
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-K 219
A V+ G+ RGFGFV+F + A A+++LN +++ A K E K
Sbjct: 247 SA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELK 305
Query: 220 QSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279
+ ++ + +L Q ++V NL + L F
Sbjct: 306 KQYEAARLEKLAKY----------------------QGVNLFVKNLDDSIDDEKLKEEFA 343
Query: 280 ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
GTI +V RD +GFGFV +ST EA AI N +I+ GKP+
Sbjct: 344 PF--GTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VYV NI + + +E+F G + L K + +GFV++ D +AA A+ L
Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
N GQ + V A Y +++ E + + N+FV +L + D L
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLK 339
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ F T + A+VM D+ TG SRGFGFV F E+A AI + N + + + + A
Sbjct: 340 EEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 211 K 211
+
Sbjct: 399 R 399
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 154/341 (45%), Gaps = 62/341 (18%)
Query: 36 GNLPPRFDASTCRSVYVG------NIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGF 89
G+L P +D +T R ++ N+ N L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 90 VDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQRE-------DTSGHFNVFVGD 139
VD+ AA A++ NG I P +K+NWA +S + + ++FVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 140 LSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198
L+P VT++ LF F + + + S A+++ DQ TG S+G+GFV F N ++ Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 199 LGNRQIRCNWAAKGATSGDEKQSSD----SKSVVELTN-GISVLFAEDGQE--------- 244
L R I+ G TSG ++ S ++S L N + F GQ
Sbjct: 230 LNGRAIKV-----GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNM 284
Query: 245 --KSN---------EDAPENN----PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 289
K N + P N P TTV++G LSS VT +L +F GTI V
Sbjct: 285 GFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYV 342
Query: 290 RVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330
++ K GFV+Y A AI + ++ SWG
Sbjct: 343 KIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWG 383
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+V++G + VT L+ F G + K+ + K GFV Y DR SA AI + G
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGK---CCGFVQYVDRLSAEAAIAGMQG 370
Query: 108 RHIFGQPIKVNWAYASSQ 125
I ++++W ++ Q
Sbjct: 371 FPIANSRVRLSWGRSAKQ 388
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 50/296 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 109 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 165 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 214
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
D +S E E +T VY+ NL E++ + + F
Sbjct: 215 KDRQSKFE----------------------EMKANFTNVYIKNLDQEISEEEFRQMFEKF 252
Query: 282 CVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
G I + RD +GFGFV YSTH A A+ N + + G+ + K
Sbjct: 253 --GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQK 306
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 32/254 (12%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ +L E+++ F F +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEIT 256
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV++ + AQ+A++++N K + +++ A K +E +
Sbjct: 257 SATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELR 315
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E + Q +YV NL+ ++ L F
Sbjct: 316 KQYEAARLEKASKY---------------------QGVNLYVKNLTDDIDDEKLREMFAP 354
Query: 281 LCVGTIEDVRVQRD 294
GTI +V RD
Sbjct: 355 Y--GTITSAKVMRD 366
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 68/231 (29%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VY+ N+ +++ +++F G + L + + +GFV+Y SA A+ +
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEM 289
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLF 150
N + + GQ + V A +RE+ N++V +L+ ++ D L
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 151 ACFSVFPTCSDARVMWD---QKT------------------------------------- 170
F+ + T + A+VM D ++T
Sbjct: 350 EMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDK 409
Query: 171 ----------GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 410 ENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 308
P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+ +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 309 ALAIQMGNARILCGKPIKCSWGSK 332
A++ N ++ GKP + W +
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQR 126
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 293 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 421 KSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 49/279 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
S+YVG++ P V + L ++F+ P L C+ + Y +V++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N I +PI++ S R+ + SG NVF+ +L + + L+ FS F T
Sbjct: 120 NYAPIRDRPIRIML----SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D GRS+G+GFV F +E AQ+AI+ LNG L ++Q+ + ++ S
Sbjct: 176 KVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARS 230
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 282
+S +V P +T VYV NL E+T +L + F
Sbjct: 231 ESGAV---------------------------PSFTNVYVKNLPKEITDDELKKTFGKY- 262
Query: 283 VGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGN 316
G I V +D + FGFV + + AA+A++ N
Sbjct: 263 -GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 129/313 (41%), Gaps = 37/313 (11%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGF 89
I+ N P S +V++ N+ + N L E FSS G + CK+ + YGF
Sbjct: 131 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGF 190
Query: 90 VDYFDRRSAALAIVTLNG-----RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEV 144
V + +A AI LNG + +F A S+ NV+V +L E+
Sbjct: 191 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 250
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
TD L F + S A VM DQ +G SR FGFV+F + E A A+ +NG LG +
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGN 264
A K + +E + + + + Q + +Y+ N
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKL---------------------QGSNLYLKN 348
Query: 265 LSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARI 319
L V L F G + +V + +GFGFV YS EA LA++ N ++
Sbjct: 349 LDDSVNDEKLKEMFSEY--GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKM 406
Query: 320 LCGKPIKCSWGSK 332
+ KP+ + +
Sbjct: 407 IGRKPLYVALAQR 419
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 45/196 (22%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P V ++ L F+ + RV D T RS G+ +V+F N EDA A+ L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENN 254
N + +R IR SN D
Sbjct: 120 NYAPIRDRPIRIML-------------------------------------SNRDPSTRL 142
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEAA 309
V++ NL + + + L+ F + GTI +V R KG+GFV++ A
Sbjct: 143 SGKGNVFIKNLDASIDNKALYETFSSF--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQ 200
Query: 310 LAIQMGNARILCGKPI 325
AI N +L K +
Sbjct: 201 AAIDKLNGMLLNDKQV 216
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 50/282 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 115 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 171 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 220
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281
D +S E E +T VY+ NL SE+ + + F
Sbjct: 221 KDRQSKFE----------------------EMKANFTNVYIKNLDSEIDDDEFRKMFEKF 258
Query: 282 CVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 318
G I + RD +GFGFV +STH A A++ N +
Sbjct: 259 --GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDK 298
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 32/254 (12%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ +L E+ D F F +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEIT 262
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K +E +
Sbjct: 263 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E + Q +YV NL+ ++ L F
Sbjct: 322 KQYEAARLEKASKY---------------------QGVNLYVKNLTDDIDDEKLRELFGP 360
Query: 281 LCVGTIEDVRVQRD 294
GTI +V RD
Sbjct: 361 Y--GTITSAKVMRD 372
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 44/197 (22%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ N D + A+ D
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPEN 253
LN + + R W+ + + GQ
Sbjct: 115 LNYTLIKGKPCRIMWSQRDPA-----------------------LRKTGQ---------- 141
Query: 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEA 308
V++ NL S + + LH F A G I +V +D KG+GFV Y T A
Sbjct: 142 ----GNVFIKNLDSAIDNKALHDTFAAF--GNILSCKVAQDEFGNSKGYGFVHYETAEAA 195
Query: 309 ALAIQMGNARILCGKPI 325
AI+ N +L K +
Sbjct: 196 NNAIKHVNGMLLNDKKV 212
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHP 306
N P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+
Sbjct: 49 NQPHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTA 106
Query: 307 EAALAIQMGNARILCGKPIKCSWGSK 332
+ A++ N ++ GKP + W +
Sbjct: 107 DGERALEDLNYTLIKGKPCRIMWSQR 132
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 74/237 (31%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VY+ N+ ++ + +++F G + L + + +GFV++ SA A+ +
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLF 150
N + I Q + V A +RE+ N++V +L+ ++ D L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 151 ACFSVFPTCS------DARVMWDQKT---------------------------------- 170
F + T + D V DQ
Sbjct: 356 ELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSES 415
Query: 171 ----------------GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 416 SEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 472
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 293 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325
+ KGFGFV +S+ EA+ A+ N R++ GKP+
Sbjct: 433 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 465
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 129/295 (43%), Gaps = 47/295 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 116 LNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E AQ+AI +NG L ++++ G
Sbjct: 172 CKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV---------GHHIAK 221
Query: 222 SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV---DLHRHF 278
D +S E E +T VYV N+ + T DL F
Sbjct: 222 KDRQSKFE----------------------EMKANFTNVYVKNIDQDTTEEEFRDLFEKF 259
Query: 279 HALCVGTI-EDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
+ T+ D + +GFGFV +++H AA A++ N + G+ + K
Sbjct: 260 GEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 31/254 (12%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V A R E+ +F NV+V ++ + T+ F F +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D ++G+SRGFGFV+F + ++A +A+ LN K +++ A K +E +
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 221 SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 280
+ +E + Q +Y+ NLS ++ L F +
Sbjct: 324 KQYEAARIEKASKY---------------------QGVNLYIKNLSDDIDDEKLRELFSS 362
Query: 281 LCVGTIEDVRVQRD 294
GTI +V RD
Sbjct: 363 Y--GTITSAKVMRD 374
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 71/222 (31%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
+VYV NI T +++F G + L + +S +GFV++ +AA A+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATL 149
LN + GQ + V A +RE+ N+++ +LS ++ D L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 150 FACFSVFPTCSDARVMW---------------------------------------DQKT 170
FS + T + A+VM D K
Sbjct: 357 RELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 171 -------------GRSRGFGFVSFRNQEDAQSAINDLNGKWL 199
G+S+GFGFV F + ++A A+ ++N + +
Sbjct: 417 NKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMV 458
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 308
P ++YVG L VT L F + +G + +RV RD G+ +V Y+ +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 109
Query: 309 ALAIQMGNARILCGKPIKCSWGSK 332
A++ N ++ G+P + W +
Sbjct: 110 ERALEDLNYTLIKGRPCRIMWSQR 133
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 293 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 431 KSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 127/280 (45%), Gaps = 50/280 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ VT++ L + F G + + L+ + YG+V++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 105 LNGRHIFGQPIKVNWAY--ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
LN ++G+PI+V +++ S +R SG N+F+ +L + L FS F
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D +G+S+G+GFV + N+E AQ AI LNG L ++Q+ +
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR----------- 201
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 282
+ D+ N ++T VYV NL+ T DL F
Sbjct: 202 ----------------------RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEY- 238
Query: 283 VGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNA 317
G I V +D KGFGFV + +AA A++ N
Sbjct: 239 -GKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 140/305 (45%), Gaps = 37/305 (12%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDR 95
P S ++++ N+ + + L + FSS G + CK + D S YGFV Y +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYGFVQYANE 174
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF---NVFVGDLSPEVTDATLFAC 152
SA AI LNG + + + V +R+ T+ NV+V +L+ TD L
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + + A VM D + G+S+GFGFV+F N +DA A+ LNG +++ W
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYVGR 289
Query: 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272
A E+++ + V + ++ +E +++ Q + +YV NL ++
Sbjct: 290 AQKKSERETE-----------LRVRYEQNLKEAADKF------QSSNLYVKNLDPSISDE 332
Query: 273 DLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327
L F GT+ +V RD KG GFV ++T EA A+ + +++ KP+
Sbjct: 333 KLKEIFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Query: 328 SWGSK 332
+ +
Sbjct: 391 AIAQR 395
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALA 311
T++YVG+L VT L F + GT+ VRV RD G+G+V ++ +AA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQM--GTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 312 IQMGNARILCGKPIKCSW 329
IQ N L GKPI+ +
Sbjct: 94 IQELNYIPLYGKPIRVMY 111
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY---GFVDYF 93
NL D ++YV N+ P +++ L+E+FS G + K+++ + GFV +
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 94 DRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126
A A+ L+G+ I +P+ V A R
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 125/279 (44%), Gaps = 49/279 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTG---PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
S+Y G++ P+VT A L ++F + C+ + Y ++++ + A A+ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N +F +PI++ S R+ + SG N+F+ +L + + LF FS F T
Sbjct: 110 NYTPLFDRPIRIML----SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D TGRS+G+GFV F +E AQ+AI+ LNG + ++Q+
Sbjct: 166 KVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGH-------------- 210
Query: 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 282
F + +E+ P P++T VYV NL E+ +L + F
Sbjct: 211 ---------------FIRRQERARDENTP--TPRFTNVYVKNLPKEIGEDELRKTFGKF- 252
Query: 283 VGTIEDVRVQRDKG-----FGFVRYSTHPEAALAIQMGN 316
G I V RD+ FGFV + AA A++ N
Sbjct: 253 -GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 128/313 (40%), Gaps = 37/313 (11%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGF 89
I+ N P S ++++ N+ + N L E FSS G + CK+ + YGF
Sbjct: 121 IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGF 180
Query: 90 VDYFDRRSAALAIVTLNG-----RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEV 144
V + SA AI LNG + +F A + T NV+V +L E+
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
+ L F F S A VM DQ +G SR FGFV+F E A SA+ +NG LG+ +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL 299
Query: 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGN 264
A K + +E L + QE+ N Q +Y+ N
Sbjct: 300 YVGRAQKKSEREEE------------------LRRKFEQERINR---FEKSQGANLYLKN 338
Query: 265 LSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARI 319
L V L F G + +V + +GFGFV YS EA A+ N ++
Sbjct: 339 LDDSVDDEKLKEMFSEY--GNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 320 LCGKPIKCSWGSK 332
+ KP+ + +
Sbjct: 397 IGRKPLYIALAQR 409
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRS 97
RF+ S ++Y+ N+ V + L+E+FS G + K++ + +GFV Y +
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEE 384
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF 133
A A+ +NG+ I +P+ + A ++ED H
Sbjct: 385 ALRALSEMNGKMIGRKPLYIALA---QRKEDRRAHL 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,175,643
Number of Sequences: 539616
Number of extensions: 6672510
Number of successful extensions: 37609
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 33306
Number of HSP's gapped (non-prelim): 3318
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)