Query 014839
Match_columns 417
No_of_seqs 289 out of 2663
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-47 7.1E-52 361.8 34.3 284 46-334 2-350 (352)
2 KOG0148 Apoptosis-promoting RN 100.0 4.3E-44 9.3E-49 301.0 20.9 238 44-337 3-242 (321)
3 KOG0145 RNA-binding protein EL 100.0 3.1E-43 6.6E-48 293.9 25.9 293 36-333 29-358 (360)
4 TIGR01628 PABP-1234 polyadenyl 100.0 4.6E-42 1E-46 344.9 30.1 266 44-333 85-364 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.8E-42 1E-46 344.8 29.7 248 49-334 2-262 (562)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.2E-41 6.9E-46 330.3 33.4 280 46-333 1-351 (481)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-41 3.1E-46 329.5 29.8 246 45-335 56-309 (578)
8 KOG0117 Heterogeneous nuclear 100.0 1.1E-41 2.3E-46 305.3 25.5 244 45-335 81-333 (506)
9 TIGR01645 half-pint poly-U bin 100.0 3.1E-40 6.6E-45 320.4 34.5 167 46-212 106-284 (612)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.6E-40 1.2E-44 321.6 34.0 277 47-333 96-480 (481)
11 TIGR01622 SF-CC1 splicing fact 100.0 2.1E-39 4.6E-44 318.6 33.3 285 44-331 86-446 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.4E-39 7.4E-44 321.5 32.9 274 42-331 170-500 (509)
13 KOG0127 Nucleolar protein fibr 100.0 2.1E-37 4.5E-42 283.9 25.6 283 48-333 6-378 (678)
14 KOG0144 RNA-binding protein CU 100.0 1E-36 2.2E-41 272.1 18.9 288 44-336 31-507 (510)
15 TIGR01645 half-pint poly-U bin 100.0 1.1E-33 2.3E-38 275.0 24.2 174 131-334 106-285 (612)
16 KOG0123 Polyadenylate-binding 100.0 5.8E-33 1.3E-37 258.3 22.4 238 48-332 2-245 (369)
17 TIGR01659 sex-lethal sex-letha 100.0 1.3E-32 2.8E-37 254.9 23.6 171 42-215 102-278 (346)
18 TIGR01659 sex-lethal sex-letha 100.0 9.2E-33 2E-37 255.9 21.3 168 127-335 102-277 (346)
19 KOG0124 Polypyrimidine tract-b 100.0 2.3E-31 5E-36 232.9 21.7 163 48-210 114-288 (544)
20 KOG0123 Polyadenylate-binding 100.0 9.3E-32 2E-36 250.3 19.4 258 50-332 79-348 (369)
21 KOG0110 RNA-binding protein (R 100.0 1.4E-30 3E-35 246.9 19.1 257 43-333 381-693 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.7E-29 3.7E-34 240.2 21.1 163 131-334 2-172 (352)
23 KOG0147 Transcriptional coacti 100.0 8.3E-30 1.8E-34 235.5 16.0 286 43-331 175-526 (549)
24 KOG0127 Nucleolar protein fibr 100.0 2E-29 4.2E-34 231.7 16.1 269 47-315 117-516 (678)
25 TIGR01622 SF-CC1 splicing fact 100.0 2.8E-28 6.1E-33 239.7 24.1 176 129-334 86-267 (457)
26 KOG0144 RNA-binding protein CU 100.0 2.6E-29 5.6E-34 224.9 13.5 166 129-334 31-207 (510)
27 KOG0148 Apoptosis-promoting RN 100.0 1.3E-27 2.8E-32 201.8 18.6 172 38-215 53-241 (321)
28 KOG0145 RNA-binding protein EL 100.0 5E-28 1.1E-32 202.9 14.6 167 129-336 38-212 (360)
29 TIGR01648 hnRNP-R-Q heterogene 100.0 2.9E-27 6.3E-32 230.0 21.3 194 94-334 18-223 (578)
30 KOG0124 Polypyrimidine tract-b 99.9 6.1E-28 1.3E-32 211.5 11.2 171 133-333 114-290 (544)
31 KOG0131 Splicing factor 3b, su 99.9 6.9E-27 1.5E-31 186.2 13.4 171 44-216 6-181 (203)
32 KOG0131 Splicing factor 3b, su 99.9 5.4E-27 1.2E-31 186.8 12.2 169 129-337 6-181 (203)
33 KOG4212 RNA-binding protein hn 99.9 4.5E-25 9.7E-30 197.8 25.5 162 46-208 43-290 (608)
34 KOG0117 Heterogeneous nuclear 99.9 4.7E-25 1E-29 198.6 19.9 196 92-338 41-253 (506)
35 KOG1190 Polypyrimidine tract-b 99.9 1.1E-23 2.4E-28 187.7 23.5 277 46-332 149-490 (492)
36 KOG0109 RNA-binding protein LA 99.9 2.4E-25 5.2E-30 189.9 11.7 149 133-334 3-151 (346)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.6E-24 1.2E-28 212.2 22.1 187 128-333 171-375 (509)
38 KOG4211 Splicing factor hnRNP- 99.9 9.8E-23 2.1E-27 186.4 22.6 279 44-330 7-355 (510)
39 KOG0109 RNA-binding protein LA 99.9 2E-24 4.4E-29 184.3 10.6 149 49-214 4-152 (346)
40 KOG1190 Polypyrimidine tract-b 99.9 1.3E-21 2.8E-26 174.5 21.0 283 43-334 24-374 (492)
41 KOG0110 RNA-binding protein (R 99.9 2E-22 4.4E-27 191.8 12.8 165 49-213 517-694 (725)
42 KOG0147 Transcriptional coacti 99.9 9.1E-23 2E-27 189.1 9.3 180 131-338 178-363 (549)
43 KOG0146 RNA-binding protein ET 99.9 2.2E-22 4.7E-27 169.8 9.5 219 112-336 2-368 (371)
44 KOG0105 Alternative splicing f 99.9 7.1E-21 1.5E-25 152.1 15.8 173 130-321 4-176 (241)
45 KOG1456 Heterogeneous nuclear 99.9 1.5E-19 3.3E-24 159.5 25.7 266 52-332 127-490 (494)
46 KOG0120 Splicing factor U2AF, 99.9 3.5E-21 7.6E-26 181.2 15.5 267 44-330 172-489 (500)
47 KOG0146 RNA-binding protein ET 99.9 2.1E-21 4.6E-26 163.8 12.5 176 39-214 11-367 (371)
48 KOG4205 RNA-binding protein mu 99.9 2.4E-21 5.2E-26 174.1 10.8 168 131-335 5-178 (311)
49 KOG1456 Heterogeneous nuclear 99.9 8.1E-19 1.8E-23 154.9 25.9 284 42-334 26-364 (494)
50 KOG0105 Alternative splicing f 99.9 1.5E-20 3.3E-25 150.2 13.2 148 45-199 4-175 (241)
51 KOG4205 RNA-binding protein mu 99.8 5.9E-21 1.3E-25 171.6 10.8 170 46-217 5-181 (311)
52 KOG4206 Spliceosomal protein s 99.8 1.7E-19 3.6E-24 150.3 17.4 194 131-331 8-220 (221)
53 KOG4206 Spliceosomal protein s 99.8 1.6E-18 3.4E-23 144.5 15.7 161 45-210 7-220 (221)
54 KOG4212 RNA-binding protein hn 99.8 1.1E-17 2.4E-22 150.7 18.2 199 130-331 42-292 (608)
55 KOG1365 RNA-binding protein Fu 99.8 8.8E-19 1.9E-23 155.2 10.4 276 44-331 57-360 (508)
56 KOG1457 RNA binding protein (c 99.8 1.1E-17 2.4E-22 137.9 15.0 189 130-320 32-273 (284)
57 PLN03134 glycine-rich RNA-bind 99.8 9E-18 2E-22 136.5 12.6 86 129-214 31-116 (144)
58 KOG4211 Splicing factor hnRNP- 99.7 2.7E-17 6E-22 151.0 15.1 167 130-331 8-180 (510)
59 KOG1548 Transcription elongati 99.7 3.8E-16 8.2E-21 137.2 16.3 189 132-330 134-349 (382)
60 KOG0106 Alternative splicing f 99.7 2.8E-17 6.2E-22 138.7 8.4 165 134-330 3-168 (216)
61 KOG0106 Alternative splicing f 99.7 2.3E-17 5.1E-22 139.2 7.4 151 48-210 2-169 (216)
62 KOG1457 RNA binding protein (c 99.7 9.9E-16 2.1E-20 126.5 15.7 154 42-199 29-273 (284)
63 PLN03134 glycine-rich RNA-bind 99.7 4.9E-16 1.1E-20 126.3 13.7 78 256-335 33-116 (144)
64 KOG0122 Translation initiation 99.6 1.1E-15 2.3E-20 128.3 9.8 83 130-212 187-269 (270)
65 KOG1548 Transcription elongati 99.6 3.8E-14 8.3E-19 124.8 17.3 165 44-212 131-352 (382)
66 PF00076 RRM_1: RNA recognitio 99.6 4.9E-15 1.1E-19 105.8 9.2 70 135-205 1-70 (70)
67 KOG0149 Predicted RNA-binding 99.6 2.5E-15 5.5E-20 125.7 6.9 80 132-212 12-91 (247)
68 KOG0107 Alternative splicing f 99.6 1E-14 2.3E-19 116.2 9.0 79 46-125 9-87 (195)
69 PF14259 RRM_6: RNA recognitio 99.6 3.2E-14 6.9E-19 101.5 9.4 70 135-205 1-70 (70)
70 KOG0125 Ataxin 2-binding prote 99.6 1.8E-14 3.9E-19 125.8 9.6 103 105-212 72-174 (376)
71 KOG0114 Predicted RNA-binding 99.6 3.8E-14 8.3E-19 102.7 9.6 88 36-123 7-95 (124)
72 PF00076 RRM_1: RNA recognitio 99.5 2.3E-14 4.9E-19 102.3 8.3 65 260-326 1-70 (70)
73 KOG0125 Ataxin 2-binding prote 99.5 4E-14 8.6E-19 123.7 11.2 79 255-335 94-176 (376)
74 PLN03120 nucleic acid binding 99.5 5.5E-14 1.2E-18 122.1 11.5 74 258-334 5-81 (260)
75 KOG0126 Predicted RNA-binding 99.5 1.6E-15 3.4E-20 121.4 1.0 86 130-215 33-118 (219)
76 COG0724 RNA-binding proteins ( 99.5 1.6E-13 3.6E-18 126.3 14.5 146 132-294 115-260 (306)
77 PLN03120 nucleic acid binding 99.5 7.8E-14 1.7E-18 121.2 11.0 76 47-123 4-80 (260)
78 KOG0113 U1 small nuclear ribon 99.5 5.9E-14 1.3E-18 121.2 10.0 90 124-213 93-182 (335)
79 KOG0114 Predicted RNA-binding 99.5 9.8E-14 2.1E-18 100.6 9.0 73 257-331 18-93 (124)
80 KOG0108 mRNA cleavage and poly 99.5 1.9E-14 4.2E-19 135.4 6.7 83 133-215 19-101 (435)
81 KOG4307 RNA binding protein RB 99.5 5.8E-13 1.3E-17 127.0 16.0 191 134-329 313-510 (944)
82 KOG4207 Predicted splicing fac 99.5 3.4E-14 7.3E-19 116.1 6.4 88 127-214 8-95 (256)
83 PLN03213 repressor of silencin 99.5 5.8E-14 1.3E-18 128.8 7.9 78 46-123 9-88 (759)
84 KOG4307 RNA binding protein RB 99.5 6.7E-13 1.4E-17 126.6 15.2 161 46-209 310-511 (944)
85 KOG0107 Alternative splicing f 99.5 1.1E-13 2.3E-18 110.5 7.3 75 257-333 10-85 (195)
86 PF14259 RRM_6: RNA recognitio 99.5 2.5E-13 5.3E-18 96.9 8.6 65 260-326 1-70 (70)
87 KOG0122 Translation initiation 99.5 2.8E-13 6E-18 113.9 10.0 77 255-333 187-269 (270)
88 KOG0121 Nuclear cap-binding pr 99.5 1.4E-13 2.9E-18 103.9 6.8 82 131-212 35-116 (153)
89 KOG1365 RNA-binding protein Fu 99.5 2E-13 4.3E-18 121.6 8.5 164 46-211 160-361 (508)
90 KOG0120 Splicing factor U2AF, 99.5 1.2E-12 2.6E-17 124.0 14.2 169 44-212 286-492 (500)
91 KOG0111 Cyclophilin-type pepti 99.4 1.4E-13 3E-18 113.6 5.2 87 130-216 8-94 (298)
92 COG0724 RNA-binding proteins ( 99.4 1.7E-12 3.6E-17 119.5 13.3 146 47-192 115-285 (306)
93 KOG4207 Predicted splicing fac 99.4 3.3E-13 7.2E-18 110.4 6.9 79 252-332 8-92 (256)
94 PLN03121 nucleic acid binding 99.4 1.2E-12 2.7E-17 111.7 10.7 78 131-212 4-81 (243)
95 KOG0121 Nuclear cap-binding pr 99.4 5.1E-13 1.1E-17 100.8 6.6 73 256-330 35-113 (153)
96 PLN03213 repressor of silencin 99.4 8.9E-13 1.9E-17 121.2 9.1 75 256-332 9-87 (759)
97 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 5E-17 92.0 9.4 72 134-207 1-72 (72)
98 KOG0130 RNA-binding protein RB 99.4 7.5E-13 1.6E-17 100.8 6.6 84 129-212 69-152 (170)
99 KOG4660 Protein Mei2, essentia 99.4 1.2E-11 2.7E-16 116.0 15.8 159 44-211 72-249 (549)
100 PLN03121 nucleic acid binding 99.4 2.7E-12 5.8E-17 109.7 10.2 73 257-332 5-80 (243)
101 PF13893 RRM_5: RNA recognitio 99.4 2.8E-12 6.2E-17 86.8 8.4 55 274-330 1-56 (56)
102 smart00362 RRM_2 RNA recogniti 99.4 3.4E-12 7.3E-17 91.1 9.0 68 259-328 1-72 (72)
103 smart00360 RRM RNA recognition 99.4 3E-12 6.4E-17 91.1 8.5 71 137-207 1-71 (71)
104 KOG0128 RNA-binding protein SA 99.3 1.3E-13 2.8E-18 134.8 -0.1 229 45-332 569-814 (881)
105 KOG0111 Cyclophilin-type pepti 99.3 1.2E-12 2.6E-17 108.1 5.6 86 256-343 9-100 (298)
106 KOG0149 Predicted RNA-binding 99.3 6.5E-12 1.4E-16 105.4 9.2 74 256-332 11-90 (247)
107 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.2E-16 87.6 9.9 74 134-208 1-74 (74)
108 KOG0130 RNA-binding protein RB 99.3 6.6E-12 1.4E-16 95.7 7.1 79 256-336 71-155 (170)
109 KOG0113 U1 small nuclear ribon 99.3 1.6E-11 3.5E-16 106.3 10.1 79 253-333 97-181 (335)
110 PF13893 RRM_5: RNA recognitio 99.3 9.1E-12 2E-16 84.3 6.9 56 64-120 1-56 (56)
111 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.1E-16 87.7 9.0 71 49-119 1-74 (74)
112 smart00361 RRM_1 RNA recogniti 99.3 2E-11 4.4E-16 86.6 8.3 61 146-206 2-69 (70)
113 KOG0129 Predicted RNA-binding 99.3 1.2E-10 2.5E-15 108.6 15.3 149 43-192 255-431 (520)
114 smart00360 RRM RNA recognition 99.3 1.8E-11 3.8E-16 87.0 7.7 67 52-118 1-71 (71)
115 KOG0126 Predicted RNA-binding 99.2 8.7E-13 1.9E-17 105.8 -0.5 81 44-124 32-116 (219)
116 KOG0129 Predicted RNA-binding 99.2 2.5E-10 5.5E-15 106.4 15.2 161 128-314 255-432 (520)
117 KOG4454 RNA binding protein (R 99.2 2.7E-12 5.9E-17 106.1 1.5 147 45-204 7-155 (267)
118 KOG0108 mRNA cleavage and poly 99.2 4E-11 8.8E-16 113.2 7.5 75 258-334 19-99 (435)
119 KOG0226 RNA-binding proteins [ 99.2 3E-11 6.5E-16 102.3 5.4 162 50-211 99-269 (290)
120 KOG4208 Nucleolar RNA-binding 99.1 2.4E-10 5.3E-15 94.2 8.7 86 127-212 44-130 (214)
121 KOG0128 RNA-binding protein SA 99.1 2.1E-11 4.6E-16 119.5 2.9 146 45-211 665-814 (881)
122 KOG0415 Predicted peptidyl pro 99.1 1.5E-10 3.3E-15 102.4 6.3 84 129-212 236-319 (479)
123 KOG0132 RNA polymerase II C-te 99.1 2.9E-10 6.3E-15 110.4 8.0 105 48-154 422-528 (894)
124 smart00361 RRM_1 RNA recogniti 99.1 4.8E-10 1E-14 79.5 7.3 56 271-328 2-70 (70)
125 KOG0153 Predicted RNA-binding 99.1 6.2E-10 1.4E-14 98.6 9.1 80 251-332 222-302 (377)
126 KOG0112 Large RNA-binding prot 99.0 1.7E-10 3.6E-15 113.9 5.3 162 130-335 370-533 (975)
127 KOG0132 RNA polymerase II C-te 99.0 4.2E-10 9.1E-15 109.3 7.9 79 256-336 420-498 (894)
128 KOG0153 Predicted RNA-binding 99.0 2.3E-09 5E-14 95.1 8.8 82 39-122 220-302 (377)
129 KOG0112 Large RNA-binding prot 99.0 5.7E-10 1.2E-14 110.2 4.9 162 41-213 366-532 (975)
130 KOG4454 RNA binding protein (R 98.9 2.5E-10 5.5E-15 94.6 1.9 142 130-327 7-157 (267)
131 KOG4210 Nuclear localization s 98.9 1.1E-09 2.4E-14 98.9 5.8 167 45-213 86-265 (285)
132 KOG4210 Nuclear localization s 98.9 2E-09 4.3E-14 97.3 5.4 173 131-334 87-265 (285)
133 KOG4661 Hsp27-ERE-TATA-binding 98.8 1E-08 2.2E-13 96.4 7.8 81 131-211 404-484 (940)
134 KOG0226 RNA-binding proteins [ 98.8 7.2E-09 1.6E-13 88.1 5.3 161 133-329 97-266 (290)
135 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.3E-08 7.2E-13 93.0 10.2 77 256-334 404-486 (940)
136 KOG4660 Protein Mei2, essentia 98.8 8.8E-09 1.9E-13 97.2 5.9 180 127-332 70-249 (549)
137 KOG4208 Nucleolar RNA-binding 98.8 2.1E-08 4.5E-13 83.0 6.9 75 258-333 50-130 (214)
138 PF04059 RRM_2: RNA recognitio 98.8 5.8E-08 1.3E-12 72.1 8.6 78 133-210 2-85 (97)
139 KOG0533 RRM motif-containing p 98.7 5.1E-08 1.1E-12 84.9 8.4 87 128-215 79-165 (243)
140 KOG0415 Predicted peptidyl pro 98.7 2.3E-08 5E-13 88.9 5.9 78 253-332 235-318 (479)
141 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.3E-12 70.7 8.1 75 258-332 2-86 (97)
142 PF11608 Limkain-b1: Limkain b 98.6 2.3E-07 5E-12 65.3 7.7 72 48-125 3-79 (90)
143 KOG2193 IGF-II mRNA-binding pr 98.6 4.5E-09 9.7E-14 95.4 -1.3 149 133-330 2-154 (584)
144 PF11608 Limkain-b1: Limkain b 98.5 6.5E-07 1.4E-11 63.1 7.6 70 258-332 3-76 (90)
145 KOG0533 RRM motif-containing p 98.5 4E-07 8.7E-12 79.4 8.1 77 256-334 82-163 (243)
146 KOG0151 Predicted splicing reg 98.5 6.8E-07 1.5E-11 86.6 10.2 75 47-121 174-255 (877)
147 KOG0116 RasGAP SH3 binding pro 98.5 4E-07 8.7E-12 85.9 8.2 82 132-214 288-369 (419)
148 KOG0151 Predicted splicing reg 98.5 6E-07 1.3E-11 87.0 9.1 81 252-334 169-258 (877)
149 KOG0116 RasGAP SH3 binding pro 98.5 2.1E-07 4.6E-12 87.7 5.5 77 45-122 286-366 (419)
150 KOG2193 IGF-II mRNA-binding pr 98.4 2.8E-08 6E-13 90.3 -1.1 154 48-212 2-157 (584)
151 KOG4209 Splicing factor RNPS1, 98.4 4.5E-07 9.7E-12 79.3 6.4 84 128-212 97-180 (231)
152 KOG4676 Splicing factor, argin 98.3 7.4E-07 1.6E-11 80.5 4.8 191 133-327 8-220 (479)
153 PF08777 RRM_3: RNA binding mo 98.2 2.9E-06 6.4E-11 64.7 5.8 69 258-328 2-75 (105)
154 KOG4676 Splicing factor, argin 98.2 1.1E-06 2.3E-11 79.5 3.6 147 48-200 8-214 (479)
155 KOG4209 Splicing factor RNPS1, 98.2 4.1E-06 8.8E-11 73.4 6.1 74 257-333 101-180 (231)
156 PF08777 RRM_3: RNA binding mo 97.7 7.9E-05 1.7E-09 56.9 6.1 69 48-118 2-75 (105)
157 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.0001 2.3E-09 48.5 5.2 52 258-312 2-53 (53)
158 COG5175 MOT2 Transcriptional r 97.7 7.4E-05 1.6E-09 66.5 5.7 106 48-153 115-241 (480)
159 KOG0115 RNA-binding protein p5 97.7 0.00013 2.9E-09 62.8 6.6 101 97-208 6-110 (275)
160 KOG1995 Conserved Zn-finger pr 97.6 5E-05 1.1E-09 68.6 4.2 86 129-214 63-156 (351)
161 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00026 5.6E-09 53.1 7.1 70 258-331 7-90 (100)
162 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.5E-09 65.3 6.0 73 258-332 115-202 (480)
163 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.8E-09 47.4 5.1 53 47-102 1-53 (53)
164 KOG3152 TBP-binding protein, a 97.5 6.7E-05 1.5E-09 64.5 2.6 73 131-203 73-157 (278)
165 KOG1995 Conserved Zn-finger pr 97.4 0.00021 4.6E-09 64.7 4.7 80 254-335 63-156 (351)
166 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00082 1.8E-08 50.5 6.8 74 46-121 5-90 (100)
167 KOG0115 RNA-binding protein p5 97.3 0.00049 1.1E-08 59.4 6.2 95 186-328 6-109 (275)
168 KOG1855 Predicted RNA-binding 97.3 0.00027 5.8E-09 65.2 4.7 68 44-111 228-312 (484)
169 KOG3152 TBP-binding protein, a 97.2 0.00026 5.7E-09 60.9 2.7 68 47-114 74-157 (278)
170 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.5E-08 58.1 6.5 61 61-121 300-365 (378)
171 KOG1855 Predicted RNA-binding 97.1 0.00055 1.2E-08 63.2 4.7 63 254-318 228-309 (484)
172 KOG2202 U2 snRNP splicing fact 97.1 0.00023 5.1E-09 61.4 2.1 58 272-331 83-146 (260)
173 PF10309 DUF2414: Protein of u 97.1 0.0033 7.1E-08 42.4 6.6 53 48-105 6-62 (62)
174 KOG1996 mRNA splicing factor [ 97.1 0.0015 3.3E-08 57.3 6.4 58 271-330 300-364 (378)
175 KOG2416 Acinus (induces apopto 97.0 0.00094 2E-08 64.2 5.3 77 43-121 440-520 (718)
176 KOG2314 Translation initiation 97.0 0.0025 5.4E-08 61.0 7.4 78 130-208 56-140 (698)
177 KOG2202 U2 snRNP splicing fact 97.0 0.00058 1.3E-08 59.0 2.9 60 62-121 83-146 (260)
178 PF08952 DUF1866: Domain of un 96.9 0.0068 1.5E-07 48.4 8.0 76 253-333 23-107 (146)
179 KOG4849 mRNA cleavage factor I 96.8 0.0011 2.3E-08 59.6 3.7 77 131-207 79-157 (498)
180 KOG2416 Acinus (induces apopto 96.8 0.0015 3.3E-08 62.8 4.3 81 250-331 437-520 (718)
181 PF08952 DUF1866: Domain of un 96.7 0.0072 1.6E-07 48.3 7.2 75 129-212 24-107 (146)
182 KOG2591 c-Mpl binding protein, 96.7 0.0042 9.1E-08 59.4 6.5 69 258-327 176-246 (684)
183 KOG2314 Translation initiation 96.5 0.007 1.5E-07 58.1 6.7 69 258-328 59-139 (698)
184 PF08675 RNA_bind: RNA binding 96.5 0.014 3.1E-07 41.5 6.4 55 48-107 10-64 (87)
185 PF10567 Nab6_mRNP_bdg: RNA-re 96.2 0.19 4.2E-06 44.7 13.6 159 38-197 6-214 (309)
186 KOG2135 Proteins containing th 96.1 0.0054 1.2E-07 57.7 3.7 81 256-339 371-452 (526)
187 PF07576 BRAP2: BRCA1-associat 96.1 0.07 1.5E-06 41.0 9.1 68 45-112 11-81 (110)
188 KOG4849 mRNA cleavage factor I 96.0 0.0074 1.6E-07 54.4 3.9 73 255-327 78-156 (498)
189 PF04847 Calcipressin: Calcipr 95.9 0.023 4.9E-07 48.1 6.4 62 270-333 8-71 (184)
190 PF15023 DUF4523: Protein of u 95.9 0.044 9.5E-07 43.2 7.1 74 253-330 82-159 (166)
191 PF07576 BRAP2: BRCA1-associat 95.8 0.086 1.9E-06 40.4 8.6 64 258-322 14-81 (110)
192 PF10309 DUF2414: Protein of u 95.8 0.057 1.2E-06 36.4 6.4 56 258-315 6-62 (62)
193 PF15023 DUF4523: Protein of u 95.3 0.13 2.9E-06 40.6 8.0 75 43-121 82-160 (166)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.021 4.6E-07 48.1 3.9 73 257-331 7-96 (176)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.04 8.7E-07 46.4 4.9 81 131-211 6-97 (176)
196 KOG0804 Cytoplasmic Zn-finger 95.0 0.086 1.9E-06 49.6 7.1 69 44-112 71-142 (493)
197 KOG2068 MOT2 transcription fac 94.9 0.011 2.5E-07 53.4 1.3 81 133-213 78-164 (327)
198 PF08675 RNA_bind: RNA binding 94.6 0.18 3.9E-06 36.1 6.4 54 134-195 10-63 (87)
199 PF10567 Nab6_mRNP_bdg: RNA-re 94.4 2.4 5.1E-05 38.1 14.3 178 127-318 10-214 (309)
200 KOG0804 Cytoplasmic Zn-finger 94.2 0.2 4.2E-06 47.3 7.6 69 130-200 72-141 (493)
201 PF07292 NID: Nmi/IFP 35 domai 93.9 0.076 1.7E-06 38.7 3.5 67 88-154 1-74 (88)
202 KOG2068 MOT2 transcription fac 93.8 0.027 5.8E-07 51.1 1.1 74 258-333 78-163 (327)
203 PF07292 NID: Nmi/IFP 35 domai 93.7 0.097 2.1E-06 38.2 3.7 74 177-280 1-75 (88)
204 KOG4574 RNA-binding protein (c 93.7 0.048 1E-06 55.1 2.8 74 259-334 300-375 (1007)
205 KOG2591 c-Mpl binding protein, 93.5 0.21 4.6E-06 48.3 6.6 69 130-205 173-245 (684)
206 KOG4285 Mitotic phosphoprotein 93.5 0.15 3.2E-06 45.5 5.2 74 257-334 197-271 (350)
207 PF11767 SET_assoc: Histone ly 93.5 0.3 6.5E-06 33.6 5.6 55 58-117 11-65 (66)
208 KOG4285 Mitotic phosphoprotein 93.4 0.25 5.5E-06 44.1 6.4 72 48-123 198-270 (350)
209 KOG2253 U1 snRNP complex, subu 93.4 0.052 1.1E-06 53.5 2.5 110 44-158 37-161 (668)
210 KOG2253 U1 snRNP complex, subu 92.7 0.12 2.6E-06 51.1 3.8 72 253-329 36-107 (668)
211 PF04847 Calcipressin: Calcipr 92.5 0.43 9.3E-06 40.4 6.4 62 145-212 8-71 (184)
212 KOG2135 Proteins containing th 92.3 0.098 2.1E-06 49.5 2.5 77 45-124 370-447 (526)
213 KOG4574 RNA-binding protein (c 92.1 0.11 2.5E-06 52.6 3.0 71 50-122 301-373 (1007)
214 PF11767 SET_assoc: Histone ly 91.8 0.85 1.8E-05 31.4 6.1 55 268-327 11-65 (66)
215 PF03880 DbpA: DbpA RNA bindin 91.7 0.83 1.8E-05 32.3 6.2 61 267-330 11-74 (74)
216 KOG4019 Calcineurin-mediated s 91.6 0.3 6.5E-06 40.3 4.3 78 258-337 11-94 (193)
217 PF03880 DbpA: DbpA RNA bindin 90.2 0.8 1.7E-05 32.4 5.0 59 57-120 11-74 (74)
218 PF14111 DUF4283: Domain of un 87.0 0.79 1.7E-05 37.5 3.8 106 58-165 28-138 (153)
219 KOG4410 5-formyltetrahydrofola 86.9 2.1 4.5E-05 38.0 6.3 50 46-96 329-378 (396)
220 KOG2318 Uncharacterized conser 84.6 4.2 9E-05 40.0 7.6 85 129-213 171-309 (650)
221 KOG2318 Uncharacterized conser 83.6 5.8 0.00013 39.1 8.1 76 254-329 171-304 (650)
222 PF14111 DUF4283: Domain of un 80.7 1.8 4E-05 35.4 3.3 85 174-294 55-140 (153)
223 KOG4410 5-formyltetrahydrofola 80.3 12 0.00027 33.4 8.2 50 255-305 328-377 (396)
224 KOG4483 Uncharacterized conser 73.1 12 0.00026 35.1 6.5 55 46-103 390-445 (528)
225 PF03468 XS: XS domain; Inter 70.4 6.3 0.00014 30.6 3.6 49 49-98 10-69 (116)
226 KOG2891 Surface glycoprotein [ 70.1 3.4 7.4E-05 36.5 2.3 74 258-333 150-268 (445)
227 KOG3648 Golgi apparatus protei 68.8 5.3 0.00012 39.8 3.5 13 5-17 71-83 (1179)
228 KOG2891 Surface glycoprotein [ 65.5 18 0.0004 32.1 5.8 139 58-199 48-247 (445)
229 PF14893 PNMA: PNMA 61.7 5.6 0.00012 37.1 2.1 51 45-95 16-72 (331)
230 PF03468 XS: XS domain; Inter 60.8 14 0.00031 28.7 3.9 46 259-306 10-67 (116)
231 PRK14548 50S ribosomal protein 60.8 29 0.00063 25.2 5.2 56 50-105 23-81 (84)
232 PF04624 Dec-1: Dec-1 repeat; 54.4 14 0.0003 19.9 1.9 12 1-12 6-17 (27)
233 KOG4369 RTK signaling protein 52.9 13 0.00027 40.2 3.1 13 9-21 1875-1887(2131)
234 TIGR03636 L23_arch archaeal ri 52.4 52 0.0011 23.4 5.3 55 50-104 16-73 (77)
235 PF07530 PRE_C2HC: Associated 48.8 36 0.00079 23.5 4.0 63 147-212 2-65 (68)
236 KOG2295 C2H2 Zn-finger protein 48.4 2.7 5.9E-05 41.0 -2.2 71 132-202 231-301 (648)
237 KOG1295 Nonsense-mediated deca 47.5 22 0.00048 33.4 3.5 62 258-320 8-77 (376)
238 COG5638 Uncharacterized conser 46.5 70 0.0015 30.4 6.5 84 128-211 142-297 (622)
239 KOG4483 Uncharacterized conser 46.3 48 0.001 31.4 5.4 55 258-314 392-446 (528)
240 COG5624 TAF61 Transcription in 45.9 22 0.00047 33.6 3.2 13 30-42 255-267 (505)
241 PF02714 DUF221: Domain of unk 45.8 42 0.00091 31.3 5.3 56 88-154 1-56 (325)
242 PF15513 DUF4651: Domain of un 44.8 45 0.00097 22.5 3.7 19 147-165 9-27 (62)
243 COG5638 Uncharacterized conser 44.6 73 0.0016 30.2 6.3 72 251-322 140-285 (622)
244 KOG1295 Nonsense-mediated deca 44.5 24 0.00053 33.1 3.3 66 47-112 7-79 (376)
245 PF06752 E_Pc_C: Enhancer of P 43.0 12 0.00027 32.3 1.1 6 2-7 8-13 (230)
246 PRK14548 50S ribosomal protein 42.4 72 0.0016 23.2 4.8 56 260-315 23-81 (84)
247 smart00596 PRE_C2HC PRE_C2HC d 41.5 43 0.00092 23.2 3.3 63 147-212 2-65 (69)
248 TIGR03636 L23_arch archaeal ri 41.3 82 0.0018 22.4 4.9 55 260-314 16-73 (77)
249 PF00403 HMA: Heavy-metal-asso 40.4 1.1E+02 0.0023 20.2 6.9 54 259-314 1-58 (62)
250 PF00403 HMA: Heavy-metal-asso 39.0 1.1E+02 0.0024 20.1 6.3 53 49-103 1-57 (62)
251 PF08734 GYD: GYD domain; Int 37.6 1.5E+02 0.0032 21.8 6.1 45 271-316 22-68 (91)
252 cd04889 ACT_PDH-BS-like C-term 37.6 1.1E+02 0.0024 19.6 5.2 41 62-102 13-55 (56)
253 TIGR02542 B_forsyth_147 Bacter 36.6 52 0.0011 25.2 3.4 112 55-184 11-129 (145)
254 PF03439 Spt5-NGN: Early trans 36.3 71 0.0015 23.1 4.1 34 285-318 33-67 (84)
255 KOG2295 C2H2 Zn-finger protein 36.0 9.3 0.0002 37.5 -0.7 68 256-325 230-303 (648)
256 COG5193 LHP1 La protein, small 35.0 21 0.00045 33.7 1.4 61 132-192 174-244 (438)
257 PF08734 GYD: GYD domain; Int 33.6 1.5E+02 0.0034 21.7 5.6 45 61-105 22-67 (91)
258 cd04908 ACT_Bt0572_1 N-termina 33.3 1.5E+02 0.0033 19.8 6.3 43 61-103 15-58 (66)
259 PF08544 GHMP_kinases_C: GHMP 33.2 1.7E+02 0.0037 20.5 5.9 42 271-315 36-79 (85)
260 PF08544 GHMP_kinases_C: GHMP 32.2 1.8E+02 0.0039 20.4 6.0 44 62-106 37-80 (85)
261 PF02166 Androgen_recep: Andro 31.9 15 0.00033 33.6 0.0 11 317-327 335-345 (423)
262 KOG4019 Calcineurin-mediated s 30.7 1.2E+02 0.0026 25.5 4.9 75 134-214 12-92 (193)
263 PF02714 DUF221: Domain of unk 29.8 60 0.0013 30.3 3.6 31 298-330 1-31 (325)
264 PF13046 DUF3906: Protein of u 29.5 73 0.0016 21.6 2.9 32 59-90 30-63 (64)
265 PF03439 Spt5-NGN: Early trans 29.3 98 0.0021 22.3 3.9 33 73-106 33-65 (84)
266 PF14893 PNMA: PNMA 27.5 48 0.001 31.0 2.4 55 130-186 16-74 (331)
267 KOG4213 RNA-binding protein La 27.1 76 0.0017 26.6 3.2 54 47-104 111-169 (205)
268 KOG3424 40S ribosomal protein 26.9 1.5E+02 0.0033 22.9 4.5 46 143-189 34-84 (132)
269 PRK10629 EnvZ/OmpR regulon mod 25.3 3.4E+02 0.0074 21.4 8.6 70 47-120 35-108 (127)
270 COG2608 CopZ Copper chaperone 25.3 1.9E+02 0.0042 19.9 4.7 55 258-314 4-62 (71)
271 KOG4369 RTK signaling protein 24.6 58 0.0013 35.6 2.6 14 11-24 1873-1886(2131)
272 PF11823 DUF3343: Protein of u 24.4 97 0.0021 21.5 3.0 30 296-325 2-31 (73)
273 PRK11901 hypothetical protein; 24.2 1.4E+02 0.0031 27.7 4.7 48 59-107 254-306 (327)
274 PTZ00191 60S ribosomal protein 23.2 2E+02 0.0043 23.4 4.8 56 259-314 83-141 (145)
275 KOG4008 rRNA processing protei 22.7 70 0.0015 28.0 2.3 34 256-291 39-72 (261)
276 PF03249 TSA: Type specific an 22.5 17 0.00036 33.9 -1.5 25 1-25 306-330 (503)
277 KOG4008 rRNA processing protei 20.9 99 0.0022 27.1 2.9 36 42-77 35-70 (261)
278 PRK10629 EnvZ/OmpR regulon mod 20.8 4.3E+02 0.0093 20.9 6.5 70 258-330 36-108 (127)
279 COG0445 GidA Flavin-dependent 20.2 4.3E+02 0.0094 26.8 7.3 82 85-166 236-335 (621)
280 PF11411 DNA_ligase_IV: DNA li 20.1 84 0.0018 18.7 1.6 16 57-72 19-34 (36)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.3e-47 Score=361.84 Aligned_cols=284 Identities=27% Similarity=0.436 Sum_probs=225.7
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
+..+|||+|||++++|++|+++|+.||+|.+|+|++++ ++|||||+|.+.++|.+||+.|||..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36789999999999999999999999999999999875 46899999999999999999999999999999999986
Q ss_pred cCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
+... .....+|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred cccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 5432 3345689999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred --eEEEEEEccCCCCCCCCcCCC-------CCccc--h----------hccc------Ccccc-------------cc--
Q 014839 202 --RQIRCNWAAKGATSGDEKQSS-------DSKSV--V----------ELTN------GISVL-------------FA-- 239 (417)
Q Consensus 202 --~~i~v~~~~~~~~~~~~~~~~-------~~~~~--~----------~~~~------~~~~~-------------~~-- 239 (417)
++|.|.|+............. ..... . .... ..... ..
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 678888886544211100000 00000 0 0000 00000 00
Q ss_pred ---ccCcCC----------CCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEE
Q 014839 240 ---EDGQEK----------SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFV 300 (417)
Q Consensus 240 ---~~~~~~----------~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV 300 (417)
...... .....+.....+.+|||+|||+++++++|+++|++| |.|.+++|++| ||||||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f--G~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF--GAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeEcCCCCCccceEEE
Confidence 000000 000011112334579999999999999999999999 99999999876 799999
Q ss_pred EeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 301 RYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 301 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
+|.+.++|.+|++.|||..|+||.|+|.|..++.
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999987654
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-44 Score=300.97 Aligned_cols=238 Identities=40% Similarity=0.727 Sum_probs=204.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
+.+.|||||+||..++||+-|..+|+..|+|.+++++.+ +++|.|+...
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p 51 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAP 51 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCc
Confidence 467899999999999999999999999999999999876 5667766544
Q ss_pred CC--CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 124 SQ--REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 124 ~~--~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
.. ......+..|||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||-|-+.++|++||..++|..|++
T Consensus 52 ~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 52 GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 22 2233346789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhc
Q 014839 202 RQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281 (417)
Q Consensus 202 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 281 (417)
|.|+-+|++.+......+. .. -.+.-....+..++|||+||+..+||++|++.|+.|
T Consensus 132 R~IRTNWATRKp~e~n~~~----lt-------------------fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f 188 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMNGKP----LT-------------------FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF 188 (321)
T ss_pred ceeeccccccCccccCCCC----cc-------------------HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC
Confidence 9999999998762211110 00 001112234455899999999999999999999999
Q ss_pred CccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC
Q 014839 282 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPG 337 (417)
Q Consensus 282 ~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 337 (417)
|.|.+|++.+++||+||.|++.|.|.+||..||+.+|+|..++|.|.+......
T Consensus 189 --G~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 189 --GPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred --CcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999999999999999999999999999999998765443
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-43 Score=293.93 Aligned_cols=293 Identities=30% Similarity=0.432 Sum_probs=232.8
Q ss_pred CCCCCCCCCCCC-CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CCEEEEEecCHHHHHHHHHHhcCCCC
Q 014839 36 GNLPPRFDASTC-RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHI 110 (417)
Q Consensus 36 ~~~~~~~~~~~~-~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~Al~~l~g~~i 110 (417)
....+..+..++ +.|.|.-||.++|++||+.+|...|+|++|++++|+. -||+||.|.+++||.+|+..|||..+
T Consensus 29 ~~~~~~~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL 108 (360)
T KOG0145|consen 29 NNCSSGNDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL 108 (360)
T ss_pred CcCCCCCCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee
Confidence 334444433444 4488888999999999999999999999999999974 58999999999999999999999999
Q ss_pred CCceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 014839 111 FGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (417)
Q Consensus 111 ~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a 190 (417)
..++|+|.|+.+++. ...+.+|||++||..++..||..+|++||.|...+|+.|..||.+||.+||+|...++|++|
T Consensus 109 Q~KTIKVSyARPSs~---~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 109 QNKTIKVSYARPSSD---SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred ccceEEEEeccCChh---hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 999999999987663 34456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCC--eEEEEEEccCCCCCCCCcCCC---------------CCccchhcccCccc-----ccccc----CcC
Q 014839 191 INDLNGKWLGN--RQIRCNWAAKGATSGDEKQSS---------------DSKSVVELTNGISV-----LFAED----GQE 244 (417)
Q Consensus 191 ~~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~----~~~ 244 (417)
++.|||..-.| -+|.|+++............. .......+.+.... .++.- ...
T Consensus 186 Ik~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~ 265 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSG 265 (360)
T ss_pred HHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccce
Confidence 99999999877 479999986553221110000 00000000000000 00000 000
Q ss_pred CCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCC
Q 014839 245 KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNAR 318 (417)
Q Consensus 245 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~ 318 (417)
......+.......+|||-||.++.+|.-|+++|.+| |.|..|++++| |||+||++.+.++|..|+..|||.
T Consensus 266 l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF--GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy 343 (360)
T KOG0145|consen 266 LAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 343 (360)
T ss_pred eeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc--cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc
Confidence 0111223344456899999999999999999999999 99999999998 899999999999999999999999
Q ss_pred eeCCeeeEEeecCCC
Q 014839 319 ILCGKPIKCSWGSKP 333 (417)
Q Consensus 319 ~~~g~~l~v~~a~~~ 333 (417)
.+++|.|.|+|...+
T Consensus 344 ~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 344 RLGDRVLQVSFKTNK 358 (360)
T ss_pred cccceEEEEEEecCC
Confidence 999999999997654
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.6e-42 Score=344.91 Aligned_cols=266 Identities=32% Similarity=0.495 Sum_probs=225.9
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
.....+|||+|||.++++++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|++.+||..+.|+.|.|...
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 3445679999999999999999999999999999998864 5799999999999999999999999999999999877
Q ss_pred ccCCCCC--CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014839 121 YASSQRE--DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (417)
Q Consensus 121 ~~~~~~~--~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (417)
..+..+. .....++|||+|||.++++++|+++|+.||.|.++.++++ .+|+++|||||+|.+.++|.+|++.++|..
T Consensus 165 ~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 165 IKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred ccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 6554442 3445578999999999999999999999999999999988 578999999999999999999999999999
Q ss_pred eC----CeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHH
Q 014839 199 LG----NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDL 274 (417)
Q Consensus 199 ~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 274 (417)
+. |+.+.|.++..+............. ............+|||+||+.++|+++|
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~---------------------~~~~~~~~~~~~~l~V~nl~~~~~~~~L 302 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRKFEE---------------------LQQERKMKAQGVNLYVKNLDDTVTDEKL 302 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhhHHh---------------------hhhhhhcccCCCEEEEeCCCCccCHHHH
Confidence 99 9999998886654321110000000 0000011223467999999999999999
Q ss_pred HHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 275 HRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 275 ~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
+++|+.| |.|++|+++.+ +|||||+|.+.++|.+|++.|||+.|+|++|.|.|+..+
T Consensus 303 ~~~F~~~--G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 303 RELFSEC--GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHhc--CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9999999 99999999876 699999999999999999999999999999999999864
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.8e-42 Score=344.80 Aligned_cols=248 Identities=31% Similarity=0.562 Sum_probs=218.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCC
Q 014839 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (417)
Q Consensus 49 ~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~ 124 (417)
+|||+|||.+++|++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.+++..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999865 46899999999999999999999999999999999986433
Q ss_pred CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
.. .....++|||+|||.++++++|+++|+.||.|.+|++..| .+|+++|||||+|.+.++|.+|++.++|..+.|+.|
T Consensus 82 ~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2234568999999999999999999999999999999988 578899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCcc
Q 014839 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 284 (417)
Q Consensus 205 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G 284 (417)
.|.....+.... .......++|||+|||.++|+++|+++|+.| |
T Consensus 160 ~v~~~~~~~~~~----------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f--G 203 (562)
T TIGR01628 160 YVGRFIKKHERE----------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF--G 203 (562)
T ss_pred EEeccccccccc----------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhc--C
Confidence 997654432211 0011223679999999999999999999999 9
Q ss_pred ceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeC----CeeeEEeecCCCC
Q 014839 285 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC----GKPIKCSWGSKPT 334 (417)
Q Consensus 285 ~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~~ 334 (417)
.|.++.+.++ +|||||+|.+.++|.+|++.|||..|. |+.|.|.++.++.
T Consensus 204 ~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 204 EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 9999999876 789999999999999999999999999 9999999876543
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.2e-41 Score=330.34 Aligned_cols=280 Identities=20% Similarity=0.241 Sum_probs=214.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHh--cCCCCCCceEEEEecccC
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL--NGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l--~g~~i~g~~l~v~~~~~~ 123 (417)
++++|||+|||++++|++|+++|+.||+|.+|+++++ +++|||+|.+.++|.+|++.+ ++..+.|+.|+|.|+...
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~--k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG--KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC--CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 4789999999999999999999999999999999864 579999999999999999864 788999999999998654
Q ss_pred CCCCC---------CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 014839 124 SQRED---------TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (417)
Q Consensus 124 ~~~~~---------~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l 194 (417)
..... .....+|+|.||++.+++++|+++|+.||.|.+|.++++. .+++|||+|.+.++|.+|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 31111 1122479999999999999999999999999999998763 2478999999999999999999
Q ss_pred CCceeCC--eEEEEEEccCCCCC-----CCCcCCCCC-cc---ch--------hcc------------cCcc------cc
Q 014839 195 NGKWLGN--RQIRCNWAAKGATS-----GDEKQSSDS-KS---VV--------ELT------------NGIS------VL 237 (417)
Q Consensus 195 ~g~~~~g--~~i~v~~~~~~~~~-----~~~~~~~~~-~~---~~--------~~~------------~~~~------~~ 237 (417)
||..|.| +.|+|+|++..... ...+..... .. .. ... .+.. ..
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999964 58999998754321 000000000 00 00 000 0000 00
Q ss_pred ccccC---------cC------------CCCCCCCCCCCccceEEeeCCCc-cccHHHHHHhhhhcCccceEEEEeecc-
Q 014839 238 FAEDG---------QE------------KSNEDAPENNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRD- 294 (417)
Q Consensus 238 ~~~~~---------~~------------~~~~~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~~~G~i~~v~i~~~- 294 (417)
..... .. ......+...++.++|||+||+. .+|+++|+++|+.| |.|.+|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCC
Confidence 00000 00 00000011234668999999998 69999999999999 99999999887
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 295 KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 295 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
+|+|||+|.+.++|.+|+..|||..|.|++|+|.+++..
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 699999999999999999999999999999999998754
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.4e-41 Score=329.50 Aligned_cols=246 Identities=23% Similarity=0.366 Sum_probs=208.4
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec---CCCCEEEEEecCHHHHHHHHHHhcCCCCC-CceEEEEec
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIF-GQPIKVNWA 120 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~---~~~g~afV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~~~ 120 (417)
...++|||+|||++++|++|+++|+.||+|.+|+|+++ +++|||||+|.+.++|.+||+.||+..|. |+.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34588999999999999999999999999999999986 35799999999999999999999999886 777777665
Q ss_pred ccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCC-eeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--
Q 014839 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLNG-- 196 (417)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-v~~v~~~-~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g-- 196 (417)
. ..++|||+|||.++++++|.+.|++++. +.++.+. .+...++++|||||+|.++++|..|++.|+.
T Consensus 136 ~---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 136 V---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred c---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3 2468999999999999999999999864 4444333 2334567899999999999999999988753
Q ss_pred ceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHH
Q 014839 197 KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 276 (417)
Q Consensus 197 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~ 276 (417)
..+.|+.|.|+|+.+...... ......++|||+||+.++|+++|++
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~----------------------------------~~~~~~k~LfVgNL~~~~tee~L~~ 252 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDE----------------------------------DVMAKVKILYVRNLMTTTTEEIIEK 252 (578)
T ss_pred eEecCceEEEEeecccccccc----------------------------------cccccccEEEEeCCCCCCCHHHHHH
Confidence 458999999999976432211 0111236899999999999999999
Q ss_pred hhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q 014839 277 HFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335 (417)
Q Consensus 277 ~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 335 (417)
+|+.|..|.|++|++++ +||||+|.+.++|.+|++.|||.+|+|+.|+|+|++++..
T Consensus 253 ~F~~f~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 253 SFSEFKPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhcCCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999668999998764 5999999999999999999999999999999999987643
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=305.35 Aligned_cols=244 Identities=24% Similarity=0.409 Sum_probs=214.9
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCC-CceEEEEe
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIF-GQPIKVNW 119 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~~ 119 (417)
..-+.|||+.||.++.|+||..+|++.|+|-+++++.++ ++|||||.|++.+.|.+|++.||+..|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 345679999999999999999999999999999999984 6899999999999999999999999996 89999987
Q ss_pred cccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCC-eeEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHh-CC
Q 014839 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVMWDQK-TGRSRGFGFVSFRNQEDAQSAINDL-NG 196 (417)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-v~~v~~~~d~~-~~~~~g~afV~f~~~~~A~~a~~~l-~g 196 (417)
+-. +++|||+|||.+.++++|.+.|++.++ |.+|.+..++. ..++||||||+|.+...|.-|-+.| ++
T Consensus 161 Sva---------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 161 SVA---------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred eee---------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 654 457999999999999999999999975 67777766543 3578999999999999999998877 33
Q ss_pred -ceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHH
Q 014839 197 -KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275 (417)
Q Consensus 197 -~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 275 (417)
..+.|..+.|.|+.+....... .....+.|||+||+.++|+|.|+
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded----------------------------------~ms~VKvLYVRNL~~~tTeE~lk 277 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDED----------------------------------TMSKVKVLYVRNLMESTTEETLK 277 (506)
T ss_pred ceeecCCcceeeccCcccCCChh----------------------------------hhhheeeeeeeccchhhhHHHHH
Confidence 4589999999999876433221 22233679999999999999999
Q ss_pred HhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q 014839 276 RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335 (417)
Q Consensus 276 ~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 335 (417)
++|+.| |.|+.|+.++| ||||.|.+.++|.+||+.|||.+|+|..|.|.+|++...
T Consensus 278 ~~F~~~--G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 278 KLFNEF--GKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHhc--cceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 999999 99999999988 999999999999999999999999999999999998664
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.1e-40 Score=320.45 Aligned_cols=167 Identities=22% Similarity=0.413 Sum_probs=151.3
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
..++|||+|||+++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35789999999999999999999999999999998874 68999999999999999999999999999999999764
Q ss_pred cCCC--------CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014839 122 ASSQ--------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (417)
Q Consensus 122 ~~~~--------~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~ 193 (417)
.... .......++|||+|||+++++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 3221 11223457899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEccCC
Q 014839 194 LNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 194 l~g~~~~g~~i~v~~~~~~ 212 (417)
+|+..++|+.|+|.++..+
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998753
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.6e-40 Score=321.57 Aligned_cols=277 Identities=19% Similarity=0.245 Sum_probs=215.2
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC--ceEEEEecccCC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASS 124 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~~~~~ 124 (417)
..+|+|+||++++++++|+++|+.||.|.+|++++++..++|||+|.+.++|.+|++.|||..|.| ..|+|.|++...
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 457999999999999999999999999999999988777899999999999999999999999975 478888875311
Q ss_pred C--------------------C-----------C----------------------------------------------
Q 014839 125 Q--------------------R-----------E---------------------------------------------- 127 (417)
Q Consensus 125 ~--------------------~-----------~---------------------------------------------- 127 (417)
- + .
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence 0 0 0
Q ss_pred ---------------CCCCCceEEECCCCc-cCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 014839 128 ---------------DTSGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (417)
Q Consensus 128 ---------------~~~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~ 191 (417)
...++.+|||+||++ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLAL 330 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 012446899999998 69999999999999999999999763 699999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCCCCCCCcCC-CCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCcccc
Q 014839 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQS-SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVT 270 (417)
Q Consensus 192 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 270 (417)
..|+|..|.|++|+|.++............ ....... .........+.............++..+|||+|||.++|
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~t 407 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSY---KDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVS 407 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCccc---ccccCCccccCCCcccccccccCCCCcEEEEecCCCCCC
Confidence 999999999999999998654322111100 0000000 000000000000000000011235678999999999999
Q ss_pred HHHHHHhhhhcCccc--eEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCee------eEEeecCCC
Q 014839 271 SVDLHRHFHALCVGT--IEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKP------IKCSWGSKP 333 (417)
Q Consensus 271 ~~~L~~~F~~~~~G~--i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~------l~v~~a~~~ 333 (417)
+++|+++|+.| |. |+.+++..+ +++|||+|.+.++|.+|+..|||+.|.|+. |+|+|++++
T Consensus 408 ee~L~~lF~~~--G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 408 EEDLKELFAEN--GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHHhc--CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999999 87 899988755 599999999999999999999999999985 999998764
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.1e-39 Score=318.58 Aligned_cols=285 Identities=27% Similarity=0.413 Sum_probs=220.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
..+.++|||+|||..+++++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+||. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4567899999999999999999999999999999999874 47899999999999999995 999999999999998
Q ss_pred cccCCCC---------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 014839 120 AYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (417)
Q Consensus 120 ~~~~~~~---------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a 190 (417)
+...... ......++|||+|||..+++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6533211 1123358999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCCeEEEEEEccCCCCCCCCcCCC--------CCc-----cchh----c----------ccCccc------c
Q 014839 191 INDLNGKWLGNRQIRCNWAAKGATSGDEKQSS--------DSK-----SVVE----L----------TNGISV------L 237 (417)
Q Consensus 191 ~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~--------~~~-----~~~~----~----------~~~~~~------~ 237 (417)
++.|+|..+.|++|.|.|+............. ... .... . ..+... .
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 99999999999999999976332111100000 000 0000 0 000000 0
Q ss_pred ccccC------------cC----CCCCCCCC--CCCccceEEeeCCCcccc----------HHHHHHhhhhcCccceEEE
Q 014839 238 FAEDG------------QE----KSNEDAPE--NNPQYTTVYVGNLSSEVT----------SVDLHRHFHALCVGTIEDV 289 (417)
Q Consensus 238 ~~~~~------------~~----~~~~~~~~--~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~~~G~i~~v 289 (417)
..... .. ......+. ...+..+|+|.||....+ .+||++.|++| |.|..|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~--G~v~~v 402 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY--GGVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc--CCeeEE
Confidence 00000 00 00000011 235668999999955443 37899999999 999999
Q ss_pred Eeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 290 RVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 290 ~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
.+... .|++||+|.+.++|.+|++.|||+.|+|+.|.+.|..
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 99743 7999999999999999999999999999999999864
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.4e-39 Score=321.51 Aligned_cols=274 Identities=18% Similarity=0.280 Sum_probs=213.6
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhcc------------CCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCC
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSST------------GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH 109 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~------------G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~ 109 (417)
......++|||+|||+++++++|+++|..+ ++|..+.+ .+.+|||||+|.+.++|..|| .|+|..
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 345677999999999999999999999975 23444433 346789999999999999999 599999
Q ss_pred CCCceEEEEecccCCCC--------------------------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEE
Q 014839 110 IFGQPIKVNWAYASSQR--------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163 (417)
Q Consensus 110 i~g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~ 163 (417)
|.|+.|+|.+....... ......++|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 99999999864322100 0123357899999999999999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCc
Q 014839 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQ 243 (417)
Q Consensus 164 ~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
++++..+|.++|||||+|.+.++|..|++.|+|..|.|+.|.|.++.......................
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~----------- 395 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAK----------- 395 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccc-----------
Confidence 999999999999999999999999999999999999999999999875533222111100000000000
Q ss_pred CCCCCCCCCCCCccceEEeeCCCcc----------ccHHHHHHhhhhcCccceEEEEeecc---------ccEEEEEeCC
Q 014839 244 EKSNEDAPENNPQYTTVYVGNLSSE----------VTSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYST 304 (417)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~V~nLp~~----------~t~~~L~~~F~~~~~G~i~~v~i~~~---------~g~afV~f~~ 304 (417)
............+..+|+|.||... ...++|+++|++| |.|..|.|+++ .|++||+|.+
T Consensus 396 ~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~--G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~ 473 (509)
T TIGR01642 396 ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY--GPLINIVIPRPNGDRNSTPGVGKVFLEYAD 473 (509)
T ss_pred cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc--CCeeEEEeeccCcCCCcCCCcceEEEEECC
Confidence 0000001122345678999999642 1236899999999 99999999864 4899999999
Q ss_pred HHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 305 HPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 305 ~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
.++|.+|+..|||+.|+|+.|.|.|..
T Consensus 474 ~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 474 VRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 999999999999999999999999964
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=283.90 Aligned_cols=283 Identities=25% Similarity=0.413 Sum_probs=220.7
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.||||++||++++.++|.++|+.+|+|..+.++.++ ++||+||.|.-.+|+..|+...+++.|.|+.|+|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999998865 4799999999999999999999999999999999988654
Q ss_pred CCCC---------------------C--CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEE
Q 014839 124 SQRE---------------------D--TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180 (417)
Q Consensus 124 ~~~~---------------------~--~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~ 180 (417)
.... . ..+..+|.|+|||+.+.+.+|..+|+.||.|.+|.|++. ..|+..|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEE
Confidence 3221 0 112567999999999999999999999999999999966 456666999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcC-------------------CCCCccc-----------hhc
Q 014839 181 FRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ-------------------SSDSKSV-----------VEL 230 (417)
Q Consensus 181 f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~-------------------~~~~~~~-----------~~~ 230 (417)
|.+..+|..|++.+|+..|+||+|-|.|+.++........ ..++... ...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 9999999999999999999999999999976643322110 0000000 000
Q ss_pred ccCccc---------------cccc-cCcC-----CCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEE
Q 014839 231 TNGISV---------------LFAE-DGQE-----KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 289 (417)
Q Consensus 231 ~~~~~~---------------~~~~-~~~~-----~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v 289 (417)
..+.+- .... ++.. ..+...++...-..+|||+|||+++|+++|.++|++| |.|.++
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF--G~v~ya 322 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF--GEVKYA 322 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh--ccceeE
Confidence 000000 0000 0000 0001112233345799999999999999999999999 999999
Q ss_pred Eeecc------ccEEEEEeCCHHHHHHHHHHh-----CC-CeeCCeeeEEeecCCC
Q 014839 290 RVQRD------KGFGFVRYSTHPEAALAIQMG-----NA-RILCGKPIKCSWGSKP 333 (417)
Q Consensus 290 ~i~~~------~g~afV~f~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~a~~~ 333 (417)
.++.+ +|+|||.|.+..+|..||+.- .| ..++||.|.|..|-.+
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99866 799999999999999999976 33 5789999999987643
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=272.12 Aligned_cols=288 Identities=26% Similarity=0.392 Sum_probs=226.5
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CCEEEEEecCHHHHHHHHHHhcCCC-CCC--ceEE
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRH-IFG--QPIK 116 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~Al~~l~g~~-i~g--~~l~ 116 (417)
+.+.-++||+.||..++|.||+++|++||.|.+|.+++|+. +|||||.|.+.++|.+|+..||+.. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 46667899999999999999999999999999999999984 7899999999999999999998854 555 6788
Q ss_pred EEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 014839 117 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196 (417)
Q Consensus 117 v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g 196 (417)
|+++.....+. ..+++|||+.|+..++|.|++++|++||.|++|+|++| ..+.+||||||.|.+.|.|..||+.|||
T Consensus 111 vk~Ad~E~er~--~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERERI--VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhcc--ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhcc
Confidence 88886655443 56788999999999999999999999999999999999 6789999999999999999999999999
Q ss_pred ce-eCC--eEEEEEEccCCCCCCCCcCC----------------------------------------------------
Q 014839 197 KW-LGN--RQIRCNWAAKGATSGDEKQS---------------------------------------------------- 221 (417)
Q Consensus 197 ~~-~~g--~~i~v~~~~~~~~~~~~~~~---------------------------------------------------- 221 (417)
.. +.| .+|.|+|++.+.....+...
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~ 267 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLG 267 (510)
T ss_pred ceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCC
Confidence 65 666 58999999776543221110
Q ss_pred ---------------------CCCccchh--cccCcccc----c-----cccCc--------------------------
Q 014839 222 ---------------------SDSKSVVE--LTNGISVL----F-----AEDGQ-------------------------- 243 (417)
Q Consensus 222 ---------------------~~~~~~~~--~~~~~~~~----~-----~~~~~-------------------------- 243 (417)
....+... +....+.. . .....
T Consensus 268 ~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~ 347 (510)
T KOG0144|consen 268 PLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNL 347 (510)
T ss_pred CcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccc
Confidence 00000000 00000000 0 00000
Q ss_pred ---------------------------------------------------------------CCCCCCCCCCCCccceE
Q 014839 244 ---------------------------------------------------------------EKSNEDAPENNPQYTTV 260 (417)
Q Consensus 244 ---------------------------------------------------------------~~~~~~~~~~~~~~~~l 260 (417)
...........+.+..|
T Consensus 348 ~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanl 427 (510)
T KOG0144|consen 348 AGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANL 427 (510)
T ss_pred ccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccce
Confidence 00000011244566789
Q ss_pred EeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 261 YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 261 ~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
||.+||.+.-+.+|...|..| |.|.+.++..| +.|+||.|++..+|..||..|||+.|++++|+|...+++.
T Consensus 428 fiyhlPqefgdq~l~~~f~pf--G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 428 FIYHLPQEFGDQDLIATFQPF--GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred eeeeCchhhhhHHHHHHhccc--cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999 99999998877 6899999999999999999999999999999999877654
Q ss_pred CC
Q 014839 335 PP 336 (417)
Q Consensus 335 ~~ 336 (417)
.+
T Consensus 506 np 507 (510)
T KOG0144|consen 506 NP 507 (510)
T ss_pred CC
Confidence 43
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-33 Score=274.98 Aligned_cols=174 Identities=26% Similarity=0.485 Sum_probs=150.1
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
..++|||+|||+++++++|+++|+.||+|.+|++++|+.+|+++|||||+|.+.++|.+|++.+||..+.||.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
........ ...........++|||+|||+++++++|+++|+.| |.|.+++
T Consensus 186 ~~p~a~~~----------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F--G~I~svr 235 (612)
T TIGR01645 186 NMPQAQPI----------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQ 235 (612)
T ss_pred cccccccc----------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhc--CCeeEEE
Confidence 22110000 00000111234689999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
+.++ ||||||+|.+.++|.+|++.|||..|+|+.|+|.++..+.
T Consensus 236 l~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 236 LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9875 7999999999999999999999999999999999988654
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-33 Score=258.32 Aligned_cols=238 Identities=32% Similarity=0.557 Sum_probs=212.0
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~ 126 (417)
.+|||+ +++||..|.++|+.+|+|.+|+++++- +-|||||.|.++++|.+||+++|...+.|++|++.|+......
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 358998 899999999999999999999999876 4489999999999999999999999999999999998655433
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
|||.||+++++..+|.+.|+.||.|.+|++..|. .| ++|| ||+|.+++.|.+|++.+||..+.|++|.|
T Consensus 79 --------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 --------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred --------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 9999999999999999999999999999999984 45 9999 99999999999999999999999999999
Q ss_pred EEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccce
Q 014839 207 NWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 286 (417)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i 286 (417)
.....+......... .......++|.|++.+++++.|..+|..+ |.|
T Consensus 148 g~~~~~~er~~~~~~-------------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~--g~i 194 (369)
T KOG0123|consen 148 GLFERKEEREAPLGE-------------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAY--GSI 194 (369)
T ss_pred eeccchhhhcccccc-------------------------------hhhhhhhhheeccccccchHHHHHhhccc--Ccc
Confidence 887665443322211 11122569999999999999999999999 999
Q ss_pred EEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 287 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 287 ~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
.++.++++ +||+||.|.++++|..|++.||+..+++..+.|..+.+
T Consensus 195 ~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 195 TSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999886 79999999999999999999999999999999987765
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.3e-32 Score=254.94 Aligned_cols=171 Identities=25% Similarity=0.429 Sum_probs=154.7
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
.+....++|||+|||++++|++|+++|+.||+|++|+|++++ ++|||||+|.++++|.+|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345677899999999999999999999999999999999874 4689999999999999999999999999999999
Q ss_pred EecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 014839 118 NWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (417)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (417)
.++.+... ....++|||+|||++++|++|+++|++||.|..++|++|+.+++++|||||+|.+.++|++|++.|++.
T Consensus 182 ~~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 182 SYARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred eccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 99865432 234568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCC--eEEEEEEccCCCCC
Q 014839 198 WLGN--RQIRCNWAAKGATS 215 (417)
Q Consensus 198 ~~~g--~~i~v~~~~~~~~~ 215 (417)
.+.+ ++|+|.++......
T Consensus 259 ~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred ccCCCceeEEEEECCccccc
Confidence 9876 78999998765443
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.2e-33 Score=255.88 Aligned_cols=168 Identities=32% Similarity=0.503 Sum_probs=151.6
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
......++|||+|||+++++++|+++|+.||+|.+|+|++|+.+++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccce
Q 014839 207 NWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 286 (417)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i 286 (417)
.|+.+.... ...++|||+|||.++|+++|+++|++| |.|
T Consensus 182 ~~a~p~~~~---------------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~f--G~V 220 (346)
T TIGR01659 182 SYARPGGES---------------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKY--GQI 220 (346)
T ss_pred ecccccccc---------------------------------------cccceeEEeCCCCcccHHHHHHHHHhc--CCE
Confidence 998642110 012579999999999999999999999 999
Q ss_pred EEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeecCCCCC
Q 014839 287 EDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTP 335 (417)
Q Consensus 287 ~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 335 (417)
+.++|+++ +|+|||+|.+.++|.+|++.||+..|.| ++|+|.|++....
T Consensus 221 ~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 221 VQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999877 5899999999999999999999998866 7999999987544
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=232.94 Aligned_cols=163 Identities=21% Similarity=0.421 Sum_probs=147.3
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
++|||+.|.+.+.|+.|+..|..||+|++|.+-+|. ++|||||+|+-+|.|..|++.+||..+.||.|+|.+..+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 469999999999999999999999999999998874 6899999999999999999999999999999999966543
Q ss_pred CCCC--------CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014839 124 SQRE--------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (417)
Q Consensus 124 ~~~~--------~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (417)
.... +...-++|||..+.++.+|+||+..|+.||+|.+|.+-+++.++.+|||+|++|.+..+-.+|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 2211 12334789999999999999999999999999999999998888999999999999999999999999
Q ss_pred CceeCCeEEEEEEcc
Q 014839 196 GKWLGNRQIRCNWAA 210 (417)
Q Consensus 196 g~~~~g~~i~v~~~~ 210 (417)
=..++|..|+|..+.
T Consensus 274 lFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCV 288 (544)
T ss_pred hhhcccceEeccccc
Confidence 999999999997764
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-32 Score=250.26 Aligned_cols=258 Identities=32% Similarity=0.519 Sum_probs=218.5
Q ss_pred EEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCC
Q 014839 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (417)
Q Consensus 50 v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~ 127 (417)
|||.||+.+++.++|.++|+.||+|++|++..+. ++|| ||+|.+++.|.+|++.+||..+.|+.|.|.....+..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999999999999999999999999999999875 5789 999999999999999999999999999999877654433
Q ss_pred CC-----CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014839 128 DT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (417)
Q Consensus 128 ~~-----~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 202 (417)
.. ..-..++|.+++.++++++|.++|..+|.|.++.++.+ ..++++||+||+|.+.++|..|++.+++..+.+.
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 22 22356999999999999999999999999999999988 5677999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcC
Q 014839 203 QIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 282 (417)
Q Consensus 203 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~ 282 (417)
.+.|..+..+......-... .......+........|||.|++..++.+.|+++|+.+
T Consensus 237 ~~~V~~aqkk~e~~~~l~~~---------------------~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~- 294 (369)
T KOG0123|consen 237 ELYVGRAQKKSEREAELKRK---------------------FEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSF- 294 (369)
T ss_pred ceeecccccchhhHHHHhhh---------------------hHhhhhhccccccccccccccCccccchhHHHHHHhcc-
Confidence 99998876632221100000 00000011112234679999999999999999999999
Q ss_pred ccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 283 VGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 283 ~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
|.|.+++|..+ +|++||.|.+.++|.+|+..+|+..+.+++|.|.++..
T Consensus 295 -GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 295 -GEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred -cceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 99999999875 89999999999999999999999999999999988763
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=246.90 Aligned_cols=257 Identities=24% Similarity=0.343 Sum_probs=212.4
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
..+..+.++|+|||..+..++|...|..||+|..|.+. +....|+|+|.++.+|..|.+.|.++.+...++.+.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 35667889999999999999999999999999988443 4445799999999999999999999999888888887641
Q ss_pred CCC-----------------------C-----------C-------------CCCCCceEEECCCCccCCHHHHHHhhcC
Q 014839 123 SSQ-----------------------R-----------E-------------DTSGHFNVFVGDLSPEVTDATLFACFSV 155 (417)
Q Consensus 123 ~~~-----------------------~-----------~-------------~~~~~~~l~v~nlp~~~~e~~l~~~f~~ 155 (417)
..- + . .....++|||.||+++.+.++|...|..
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 100 0 0 0011234999999999999999999999
Q ss_pred CCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhccc
Q 014839 156 FPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTN 232 (417)
Q Consensus 156 ~G~v~~v~~~~d~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
.|.|.++.|...+.. -.+.|||||+|.+.++|..|++.|+|+.|+|+.|.|.++..+......+
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK------------- 605 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGK------------- 605 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccc-------------
Confidence 999999988754322 1356999999999999999999999999999999999997322211110
Q ss_pred CccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHH
Q 014839 233 GISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHP 306 (417)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~ 306 (417)
.-.....+++|+|+|||+..+..+++.+|..| |.|.+|+|++. +|||||+|-++.
T Consensus 606 -----------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF--GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 606 -----------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAF--GQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred -----------------ccccccccceeeeeccchHHHHHHHHHHHhcc--cceeeeccchhhcchhhccceeeeccCcH
Confidence 00111225789999999999999999999999 99999999876 899999999999
Q ss_pred HHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 307 EAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 307 ~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
+|.+|+..|.++.+.||+|.+.|++..
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccc
Confidence 999999999999999999999999753
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.7e-29 Score=240.23 Aligned_cols=163 Identities=31% Similarity=0.532 Sum_probs=148.0
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
+..+|||+|||++++|++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
+.... ...++|||+|||..+++++|+++|+.| |.|..++
T Consensus 82 ~~~~~---------------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~~~ 120 (352)
T TIGR01661 82 PSSDS---------------------------------------IKGANLYVSGLPKTMTQHELESIFSPF--GQIITSR 120 (352)
T ss_pred ccccc---------------------------------------cccceEEECCccccCCHHHHHHHHhcc--CCEEEEE
Confidence 53211 012579999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeecCCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPT 334 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 334 (417)
+..+ +|+|||+|.+.++|.+|++.|||..+.| ++|.|.|+..+.
T Consensus 121 ~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 121 ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 8765 7899999999999999999999999877 679999987654
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.97 E-value=8.3e-30 Score=235.52 Aligned_cols=286 Identities=24% Similarity=0.387 Sum_probs=219.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
..+..+||++-.|+..+++.||.+||+.+|.|..|.++.++ ++|.|||+|.+.+....|| .|.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 45667899999999999999999999999999999999875 5799999999999999999 599999999999999
Q ss_pred ecccCCCC-----------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHH
Q 014839 119 WAYASSQR-----------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187 (417)
Q Consensus 119 ~~~~~~~~-----------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A 187 (417)
.......+ .-..+-..|||+||..++++++|+.+|++||.|+.|.+.+|.+||.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 76432211 1122233499999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEccCCCCCCCC-cCC--CC----------Cccch----hcccCccccc------------
Q 014839 188 QSAINDLNGKWLGNRQIRCNWAAKGATSGDE-KQS--SD----------SKSVV----ELTNGISVLF------------ 238 (417)
Q Consensus 188 ~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~-~~~--~~----------~~~~~----~~~~~~~~~~------------ 238 (417)
.+|+..|||.+|-|+.|+|............ ... .+ ..+.. .+..+.....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~ 413 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLA 413 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhcc
Confidence 9999999999999999999766544333221 000 00 00000 0000000000
Q ss_pred -------ccc----CcCCCCCCCCCCCCccceEEeeCCCcccc----------HHHHHHhhhhcCccceEEEEeeccc-c
Q 014839 239 -------AED----GQEKSNEDAPENNPQYTTVYVGNLSSEVT----------SVDLHRHFHALCVGTIEDVRVQRDK-G 296 (417)
Q Consensus 239 -------~~~----~~~~~~~~~~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~~~G~i~~v~i~~~~-g 296 (417)
... ....+....+.-..+..|+.+.|+-..-| .||+.+.+.+| |.|..|.|.+.. |
T Consensus 414 ~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~--g~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 414 KLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH--GKVCHIFVDKNSAG 491 (549)
T ss_pred ccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc--CCeeEEEEccCCCc
Confidence 000 00000001122235677888998843322 37888999999 999999998885 9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 297 FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 297 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
+.||.|.+.+.|..|+..|||++|.||.|..+|-.
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 99999999999999999999999999999999853
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2e-29 Score=231.72 Aligned_cols=269 Identities=25% Similarity=0.372 Sum_probs=197.1
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
..+|.|+|||+.+.+.+|..+|+.||.|.+|.|.+.+. .|||||+|.+..+|.+|++.+|+..|.|++|-|.|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56799999999999999999999999999999987543 489999999999999999999999999999999998421
Q ss_pred CC------------------------------------------------------------------------------
Q 014839 124 SQ------------------------------------------------------------------------------ 125 (417)
Q Consensus 124 ~~------------------------------------------------------------------------------ 125 (417)
..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 00
Q ss_pred ---------CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--
Q 014839 126 ---------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-- 194 (417)
Q Consensus 126 ---------~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l-- 194 (417)
+.+.....+|||+|||++++|++|.+.|+.||+|....++.++.|++++|.|||.|.+..++..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 001112367999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---CC-ceeCCeEEEEEEccCCCCCCCCcCCCC-----CccchhcccCccccccccCcCC-----------------CCC
Q 014839 195 ---NG-KWLGNRQIRCNWAAKGATSGDEKQSSD-----SKSVVELTNGISVLFAEDGQEK-----------------SNE 248 (417)
Q Consensus 195 ---~g-~~~~g~~i~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 248 (417)
.| ..++||.|.|..+..+........... .....-+.+-............ ...
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 34 678999999999876543322111100 0000000000000000000000 001
Q ss_pred CCCCCCCccceEEeeCCCccccHHHHHHhhhhcCcc---c-eEEEEeecc---------ccEEEEEeCCHHHHHHHHHHh
Q 014839 249 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG---T-IEDVRVQRD---------KGFGFVRYSTHPEAALAIQMG 315 (417)
Q Consensus 249 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G---~-i~~v~i~~~---------~g~afV~f~~~~~A~~A~~~l 315 (417)
..+.-.-..++|.|.|||..++...|..+......| . +..++.+++ .||+|+.|...+.|.+|+..+
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 112223344789999999999999999887654111 2 222333322 699999999999999999875
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2.8e-28 Score=239.74 Aligned_cols=176 Identities=30% Similarity=0.527 Sum_probs=150.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
....++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|+. ++|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred ccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE
Q 014839 209 AAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED 288 (417)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~ 288 (417)
+........... .......+...+|||+|||..+|+++|+++|+.| |.|..
T Consensus 165 ~~~~~~~~~~~~---------------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~--G~i~~ 215 (457)
T TIGR01622 165 SQAEKNRAAKAA---------------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF--GDIED 215 (457)
T ss_pred cchhhhhhhhcc---------------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeEE
Confidence 654322111000 0000011225789999999999999999999999 99999
Q ss_pred EEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 289 VRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 289 v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
|.+.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.|+....
T Consensus 216 v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 216 VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence 999854 6899999999999999999999999999999999987543
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=224.88 Aligned_cols=166 Identities=25% Similarity=0.440 Sum_probs=147.3
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCC--eEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGN--RQIR 205 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g--~~i~ 205 (417)
+.+.-++||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|++.. +.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3556789999999999999999999999999999999999999999999999999999999999998866 544 6888
Q ss_pred EEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccc
Q 014839 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 285 (417)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~ 285 (417)
|+|++...+.- ...++|||+-|+..+||.|++++|++| |.
T Consensus 111 vk~Ad~E~er~--------------------------------------~~e~KLFvg~lsK~~te~evr~iFs~f--G~ 150 (510)
T KOG0144|consen 111 VKYADGERERI--------------------------------------VEERKLFVGMLSKQCTENEVREIFSRF--GH 150 (510)
T ss_pred ecccchhhhcc--------------------------------------ccchhhhhhhccccccHHHHHHHHHhh--Cc
Confidence 99987643321 112679999999999999999999999 99
Q ss_pred eEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCC-eeC--CeeeEEeecCCCC
Q 014839 286 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR-ILC--GKPIKCSWGSKPT 334 (417)
Q Consensus 286 i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~-~~~--g~~l~v~~a~~~~ 334 (417)
|++|.|.+| ||||||+|.+.+.|..||+.|||. .+. ..+|.|+||.+..
T Consensus 151 Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 151 IEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred cchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 999999997 999999999999999999999999 354 4689999998654
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-27 Score=201.76 Aligned_cols=172 Identities=28% Similarity=0.581 Sum_probs=154.3
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec----CCCCEEEEEecCHHHHHHHHHHhcCCCCCCc
Q 014839 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (417)
Q Consensus 38 ~~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~----~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 113 (417)
..+..+.+.+--|+|+.|...++.++|++.|.+||+|.++++++| +++||+||.|.+.++|++||..|||.=|.+|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 334444555677999999999999999999999999999999998 4689999999999999999999999999999
Q ss_pred eEEEEecccCCCC-------------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEE
Q 014839 114 PIKVNWAYASSQR-------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180 (417)
Q Consensus 114 ~l~v~~~~~~~~~-------------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~ 180 (417)
.|+-.|+..+..+ .....+++|||+||+.-++|++|++.|+.||.|.+|++.+| +||+||+
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 9999999876533 23355689999999999999999999999999999999977 7999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q 014839 181 FRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215 (417)
Q Consensus 181 f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 215 (417)
|.+.|+|..||..+|+.++.|..++|.|-+.....
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999999999998765443
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5e-28 Score=202.86 Aligned_cols=167 Identities=30% Similarity=0.503 Sum_probs=150.9
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
.+..++|.|.-||..++++||+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE
Q 014839 209 AAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED 288 (417)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~ 288 (417)
+++....- ....|||.+||..+|..||.++|++| |.|.-
T Consensus 118 ARPSs~~I---------------------------------------k~aNLYvSGlPktMtqkelE~iFs~f--GrIIt 156 (360)
T KOG0145|consen 118 ARPSSDSI---------------------------------------KDANLYVSGLPKTMTQKELEQIFSPF--GRIIT 156 (360)
T ss_pred ccCChhhh---------------------------------------cccceEEecCCccchHHHHHHHHHHh--hhhhh
Confidence 98753221 12469999999999999999999999 99988
Q ss_pred EEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeecCCCCCC
Q 014839 289 VRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTPP 336 (417)
Q Consensus 289 v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 336 (417)
-+|..| ||.+||.|...++|++|++.|||..-.| .+|.|+|+..+...
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 888776 8999999999999999999999997655 57999999877543
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=2.9e-27 Score=230.01 Aligned_cols=194 Identities=22% Similarity=0.373 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhcCCCCCCceEEEEecccCCC--CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCC
Q 014839 94 DRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ--REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTG 171 (417)
Q Consensus 94 ~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~--~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~ 171 (417)
-.+.|.+||..++|-.+........+..+... .......++|||+|||++++|++|+++|+.||.|.+++|++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 46788999988888877766666666544332 222344689999999999999999999999999999999999 899
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCC
Q 014839 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDA 250 (417)
Q Consensus 172 ~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (417)
+++|||||+|.+.++|++|++.|++..+. |+.|.|.++..
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~--------------------------------------- 137 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD--------------------------------------- 137 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc---------------------------------------
Confidence 99999999999999999999999999885 77777765432
Q ss_pred CCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee-------ccccEEEEEeCCHHHHHHHHHHhCC--CeeC
Q 014839 251 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-------RDKGFGFVRYSTHPEAALAIQMGNA--RILC 321 (417)
Q Consensus 251 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~-------~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 321 (417)
.++|||+|||.++++++|+++|++++. .+.++.+. +++|||||+|.+.++|.+|++.|+. ..+.
T Consensus 138 ------~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 138 ------NCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred ------CceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 167999999999999999999999942 34444443 2379999999999999999998864 3689
Q ss_pred CeeeEEeecCCCC
Q 014839 322 GKPIKCSWGSKPT 334 (417)
Q Consensus 322 g~~l~v~~a~~~~ 334 (417)
|+.|.|.|+.+..
T Consensus 211 Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 211 GHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeecccc
Confidence 9999999998654
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.1e-28 Score=211.52 Aligned_cols=171 Identities=27% Similarity=0.546 Sum_probs=147.2
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
++|||+.|.+.+.|+.|+..|.+||+|.++.+.||+.|++++|||||+|+-.|.|..|++.+||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999843221
Q ss_pred CCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee
Q 014839 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 292 (417)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~ 292 (417)
... ...+++ ..+.....++|||..++++++++||+.+|+.| |+|.+|.+-
T Consensus 194 pQA---------QpiID~-------------------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF--G~I~~C~LA 243 (544)
T KOG0124|consen 194 PQA---------QPIIDM-------------------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLA 243 (544)
T ss_pred ccc---------chHHHH-------------------HHHHHHhhheEEeeecCCCccHHHHHHHHHhh--cceeeEEee
Confidence 110 001110 01122234789999999999999999999999 999999998
Q ss_pred cc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 293 RD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 293 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
++ |||+||+|.+...-..|+..||-+.++|..|+|..+..+
T Consensus 244 r~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 244 RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred ccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 76 899999999999999999999999999999999776543
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=6.9e-27 Score=186.23 Aligned_cols=171 Identities=35% Similarity=0.636 Sum_probs=153.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
.....||||+||+..++++-|.++|-+.|+|..+++.+++ .+|||||+|.++|+|+-|++-||...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3445689999999999999999999999999999998875 579999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014839 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (417)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v-~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (417)
+. ........+.++||+||.++++|.-|.+.|+.||.+... ++++|..||.++||+||.|.+.|.+.+|++.++|+.
T Consensus 86 as--~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 86 AS--AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred cc--cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 87 222333445789999999999999999999999998653 788999999999999999999999999999999999
Q ss_pred eCCeEEEEEEccCCCCCC
Q 014839 199 LGNRQIRCNWAAKGATSG 216 (417)
Q Consensus 199 ~~g~~i~v~~~~~~~~~~ 216 (417)
+.++++.|.|+..+....
T Consensus 164 l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hcCCceEEEEEEecCCCc
Confidence 999999999997765443
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=5.4e-27 Score=186.81 Aligned_cols=169 Identities=32% Similarity=0.504 Sum_probs=148.9
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
.....+|||+||+..++++-|.++|-..|+|.++++.+|+.+..++||||++|.++|+|+-|++-|+...+.||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE
Q 014839 209 AAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED 288 (417)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~ 288 (417)
+...... ...+.+|||+||.+.+++..|.+.|+.| |.+..
T Consensus 86 as~~~~n--------------------------------------l~vganlfvgNLd~~vDe~~L~dtFsaf--G~l~~ 125 (203)
T KOG0131|consen 86 ASAHQKN--------------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAF--GVLIS 125 (203)
T ss_pred ccccccc--------------------------------------ccccccccccccCcchhHHHHHHHHHhc--ccccc
Confidence 8632111 1112579999999999999999999999 88766
Q ss_pred E-Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC
Q 014839 289 V-RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPG 337 (417)
Q Consensus 289 v-~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 337 (417)
. .++++ +||+||.|.+.+.+.+|+..|||..++++++.|+|+..+...+
T Consensus 126 ~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 126 PPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 3 45544 7899999999999999999999999999999999998765443
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=197.85 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=136.2
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHh-ccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~-~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
-.|.|||.|||+++...+|+++|. +.|+|+.|.++.|. .+|||.|+|+++|.+++|++.||...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999998 56799999999874 58999999999999999999999999999999999654
Q ss_pred cCC-------------------------------------------CC--------------------------------
Q 014839 122 ASS-------------------------------------------QR-------------------------------- 126 (417)
Q Consensus 122 ~~~-------------------------------------------~~-------------------------------- 126 (417)
... .+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 200 00
Q ss_pred -------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014839 127 -------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 127 -------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 199 (417)
-..+-..++||.||.+.+....|++.|.--|.|..+.+-.|+ .|.++|++.++|.+.-.|..|+..+++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 011224569999999999999999999999999999998885 568999999999999999999998987666
Q ss_pred CCeEEEEEE
Q 014839 200 GNRQIRCNW 208 (417)
Q Consensus 200 ~g~~i~v~~ 208 (417)
..++..+..
T Consensus 282 ~~~~~~~Rl 290 (608)
T KOG4212|consen 282 FDRRMTVRL 290 (608)
T ss_pred ccccceeec
Confidence 556555544
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.7e-25 Score=198.65 Aligned_cols=196 Identities=23% Similarity=0.398 Sum_probs=159.9
Q ss_pred ecCHHHHHHHHHHhcCCCCCCceEEEEeccc-------CCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEE
Q 014839 92 YFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-------SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164 (417)
Q Consensus 92 F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~-------~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~ 164 (417)
..+.|+|.++|....| ..|.|+-... ........-..-|||+.||.++.|+||.-+|++.|+|-++++
T Consensus 41 ~~~~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL 115 (506)
T KOG0117|consen 41 VQSEEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL 115 (506)
T ss_pred cccHHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEE
Confidence 3457788888854433 2333433221 112222344567999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCc
Q 014839 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQ 243 (417)
Q Consensus 165 ~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
+.|+.+|.+||||||.|.+.++|++|++.||+.+| .|+.|.|..+..+
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------------------------- 164 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------------------------- 164 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec-------------------------------
Confidence 99999999999999999999999999999999998 6899999887654
Q ss_pred CCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHh-
Q 014839 244 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMG- 315 (417)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~A~~~l- 315 (417)
++|||+|||.+.++++|++.|++.+ --|.+|.+..+ ||||||+|.+...|..|...|
T Consensus 165 --------------~RLFiG~IPK~k~keeIlee~~kVt-eGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 165 --------------CRLFIGNIPKTKKKEEILEEMKKVT-EGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred --------------ceeEeccCCccccHHHHHHHHHhhC-CCeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 7899999999999999999999994 34777777643 899999999999999987766
Q ss_pred CCC-eeCCeeeEEeecCCCCCCCC
Q 014839 316 NAR-ILCGKPIKCSWGSKPTPPGT 338 (417)
Q Consensus 316 ~g~-~~~g~~l~v~~a~~~~~~~~ 338 (417)
+|+ .+-|..+.|.||.+...+..
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~de 253 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPDE 253 (506)
T ss_pred CCceeecCCcceeeccCcccCCCh
Confidence 444 57999999999998765543
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.93 E-value=1.1e-23 Score=187.67 Aligned_cols=277 Identities=19% Similarity=0.293 Sum_probs=207.6
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC--ceEEEEeccc-
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYA- 122 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~~~- 122 (417)
.--++.|.|+-+.++-|-|..+|++||.|..|.-+.+.+.-.|+|+|.+.+.|..|...|+|..|.. ..|+|.+++-
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 3456889999999999999999999999987755554444469999999999999999999999875 4566666531
Q ss_pred ---------CCC------------------------------------------------CCCCC--CCceEEECCCCcc
Q 014839 123 ---------SSQ------------------------------------------------REDTS--GHFNVFVGDLSPE 143 (417)
Q Consensus 123 ---------~~~------------------------------------------------~~~~~--~~~~l~v~nlp~~ 143 (417)
+++ ..-.. .+..|.|.||...
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 000 00001 1356888888765
Q ss_pred -CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCC
Q 014839 144 -VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222 (417)
Q Consensus 144 -~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~ 222 (417)
+|.+-|..+|+-||+|..|+|+++++ --|.|+|.+...|.-|++.|+|..+.|++|+|.+++.....-......
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~ 383 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQE 383 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCc
Confidence 89999999999999999999998753 359999999999999999999999999999999998764432221111
Q ss_pred CCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeec-cccEEEEE
Q 014839 223 DSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-DKGFGFVR 301 (417)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~-~~g~afV~ 301 (417)
+ .++..+....-..+...+.......-.+++.+|++.|+|.+++||+|+.+|...+ |.|+..++.. |+.++++.
T Consensus 384 d----~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g-~~vkafkff~kd~kmal~q 458 (492)
T KOG1190|consen 384 D----QGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPG-GQVKAFKFFQKDRKMALPQ 458 (492)
T ss_pred c----ccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCC-ceEEeeeecCCCcceeecc
Confidence 1 0111111100001111111222223447788999999999999999999999984 5667777654 68999999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCe-eeEEeecCC
Q 014839 302 YSTHPEAALAIQMGNARILCGK-PIKCSWGSK 332 (417)
Q Consensus 302 f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~~ 332 (417)
+.+.|+|..|+-.+|.+.+++. .|+|+|.+.
T Consensus 459 ~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 459 LESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999998765 899999874
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=189.93 Aligned_cols=149 Identities=23% Similarity=0.425 Sum_probs=138.3
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
.+|||+|||..+++.+|+.+|++||.|.+|.|+ |.||||..++...++.|+++|+|..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999999 459999999999999999999999999999999988765
Q ss_pred CCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee
Q 014839 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 292 (417)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~ 292 (417)
.. ...+|+|+||.+.++.+||+..|++| |+|.+|+|+
T Consensus 75 sk-----------------------------------------~stkl~vgNis~tctn~ElRa~fe~y--gpviecdiv 111 (346)
T KOG0109|consen 75 SK-----------------------------------------ASTKLHVGNISPTCTNQELRAKFEKY--GPVIECDIV 111 (346)
T ss_pred CC-----------------------------------------CccccccCCCCccccCHHHhhhhccc--CCceeeeee
Confidence 22 12679999999999999999999999 999999999
Q ss_pred ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 293 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 293 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
+| ++||.|...++|..|++.|++++|.|++++|....++-
T Consensus 112 kd--y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 112 KD--YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cc--eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 88 99999999999999999999999999999999877554
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.6e-24 Score=212.22 Aligned_cols=187 Identities=17% Similarity=0.287 Sum_probs=137.7
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCC------------CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVF------------PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~------------G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (417)
.....++|||+|||+.+++++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34556899999999999999999999864 23333433 3568999999999999999996 99
Q ss_pred CceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHH
Q 014839 196 GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 275 (417)
Q Consensus 196 g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 275 (417)
|..+.|+.|+|.+................... ... ..... ............++|||+|||..+|+++|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~ 313 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNP--DDN-------AKNVE-KLVNSTTVLDSKDRIYIGNLPLYLGEDQIK 313 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCC--ccc-------ccccc-cccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 99999999999755433211100000000000 000 00000 000011112344789999999999999999
Q ss_pred HhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 276 RHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 276 ~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
++|+.| |.|..+.++++ +|||||+|.+.++|..|++.|||..|+|+.|+|.++...
T Consensus 314 ~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 314 ELLESF--GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred HHHHhc--CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999 99999999765 799999999999999999999999999999999998654
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.91 E-value=9.8e-23 Score=186.40 Aligned_cols=279 Identities=18% Similarity=0.205 Sum_probs=197.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec--CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~--~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
..+..-|.+++|||++|++||++||+.++ |..+++.+. +..|-|||+|+++|++.+|++ .+...+..+.|.|.-+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 44566799999999999999999999985 888877775 457999999999999999996 88899999999998775
Q ss_pred cCC--------CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014839 122 ASS--------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (417)
Q Consensus 122 ~~~--------~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~-v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (417)
... ..........|.+++||+.++++||.+||+..-.|.+ +.++.| ..+++.|.|||.|++.+.|+.|+.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 432 1222345678999999999999999999999877766 344545 567899999999999999999998
Q ss_pred HhCCceeCCeEEEEEEccCCCCCCCC-----cCC--------CCCccchhcccCcc------------------------
Q 014839 193 DLNGKWLGNRQIRCNWAAKGATSGDE-----KQS--------SDSKSVVELTNGIS------------------------ 235 (417)
Q Consensus 193 ~l~g~~~~g~~i~v~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~------------------------ 235 (417)
-+...|..|.|.|..+......... ... ...........+..
T Consensus 164 -rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 -RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred -HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 5777788888888665321110000 000 00000000000000
Q ss_pred c-------cccccCcCCCC---------C-CCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee--cc--
Q 014839 236 V-------LFAEDGQEKSN---------E-DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RD-- 294 (417)
Q Consensus 236 ~-------~~~~~~~~~~~---------~-~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~--~~-- 294 (417)
. ........... . ......+....++.++||+..++.++..+|+.. ....|+|. .+
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl---~p~~v~i~ig~dGr 319 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL---NPYRVHIEIGPDGR 319 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC---CceeEEEEeCCCCc
Confidence 0 00000000000 0 000112223678999999999999999999986 33455553 33
Q ss_pred -ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 295 -KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 295 -~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.|-|+|+|.+.++|..|+.. ++..+..+.|.+...
T Consensus 320 ~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred cCCcceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 78999999999999999987 888999999888654
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=2e-24 Score=184.28 Aligned_cols=149 Identities=26% Similarity=0.470 Sum_probs=139.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCCC
Q 014839 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED 128 (417)
Q Consensus 49 ~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~~ 128 (417)
+|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||..++...|..||..|||-.|.|..|+|+-++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEecccc-----
Confidence 6999999999999999999999999999999764 9999999999999999999999999999999988765
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
...+.+|+|+||.+..+..||+..|++||+|.+|+|++ +|+||.|...++|..|++.|++.++.|++++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 45667899999999999999999999999999999994 4999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014839 209 AAKGAT 214 (417)
Q Consensus 209 ~~~~~~ 214 (417)
++..-.
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 976543
No 40
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.89 E-value=1.3e-21 Score=174.53 Aligned_cols=283 Identities=19% Similarity=0.231 Sum_probs=198.0
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC--CCCCCceEEEEec
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNWA 120 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~v~~~ 120 (417)
...+++.|.+||||++++|+||..++.+||.|..+++.+.++ .||++|.+++.|...+..... -.+.|++|.|.|+
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 345789999999999999999999999999999998887666 999999999999885533222 2356777777776
Q ss_pred ccC------------------------------CC-----CCCCC--CCceEEECCCCccCCHHHHHHhhcCCCCeeEEE
Q 014839 121 YAS------------------------------SQ-----REDTS--GHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163 (417)
Q Consensus 121 ~~~------------------------------~~-----~~~~~--~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~ 163 (417)
.-. .. ..... .--+++|.++-+.++-+-|..+|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 411 00 00000 113578999999999999999999999998886
Q ss_pred EeecCCCCCccc-EEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCCCC------CCCcCCCCCccchhcccCc
Q 014839 164 VMWDQKTGRSRG-FGFVSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAKGATS------GDEKQSSDSKSVVELTNGI 234 (417)
Q Consensus 164 ~~~d~~~~~~~g-~afV~f~~~~~A~~a~~~l~g~~~~--g~~i~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 234 (417)
-+. ++-| -|.|+|.+.+.|..|...|+|+.|. .+.|++.|+.-..-. ..+.......+..+.....
T Consensus 182 TF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l 256 (492)
T KOG1190|consen 182 TFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSL 256 (492)
T ss_pred EEe-----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcccccc
Confidence 552 2223 3999999999999999999999873 378888888533211 0000000000000000000
Q ss_pred ---------c-------ccccccCcCCCCCCCCCCCC--ccceEEeeCCCc-cccHHHHHHhhhhcCccceEEEEeeccc
Q 014839 235 ---------S-------VLFAEDGQEKSNEDAPENNP--QYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDK 295 (417)
Q Consensus 235 ---------~-------~~~~~~~~~~~~~~~~~~~~--~~~~l~V~nLp~-~~t~~~L~~~F~~~~~G~i~~v~i~~~~ 295 (417)
+ ....+............-.. ....|.|.||.. .+|.+.|..+|.-| |+|.+|+|..++
T Consensus 257 ~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY--GdVqRVkil~nk 334 (492)
T KOG1190|consen 257 DQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY--GDVQRVKILYNK 334 (492)
T ss_pred chhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh--cceEEEEeeecC
Confidence 0 00000000000001011111 147788888865 67999999999999 999999999885
Q ss_pred c-EEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 296 G-FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 296 g-~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
+ -|+|+|.|...|.-|++.|+|..+.|++|+|.+.+...
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 4 69999999999999999999999999999999988543
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=2e-22 Score=191.76 Aligned_cols=165 Identities=24% Similarity=0.419 Sum_probs=146.5
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-------CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-------SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 49 ~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~-------~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
+|||.||+++.+.++|...|..+|.|.++.|...+. .|||||+|.++++|+.|++.|+|+.+.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998877653 3999999999999999999999999999999999998
Q ss_pred cCC------CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014839 122 ASS------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (417)
Q Consensus 122 ~~~------~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (417)
... ........+.|+|+|||+..+..+++.+|..||.|.+|+++.....+.++|||||+|.+..+|.+|++.|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 221 11222335789999999999999999999999999999999764556689999999999999999999999
Q ss_pred CceeCCeEEEEEEccCCC
Q 014839 196 GKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 196 g~~~~g~~i~v~~~~~~~ 213 (417)
.+-+.||.|.++|+....
T Consensus 677 STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ccceechhhheehhccch
Confidence 999999999999997654
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=9.1e-23 Score=189.10 Aligned_cols=180 Identities=25% Similarity=0.376 Sum_probs=151.0
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
..+++|+.-|+...++.||.++|+.+|.|.+|+++.|+.+++++|.+||+|.+.+....|+. |.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 45789999999999999999999999999999999999999999999999999999999997 99999999999998775
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
......... .....+.....+...|||+||++++++++|+.+|+.| |.|..|.
T Consensus 257 aeknr~a~~-------------------------s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf--g~Ie~v~ 309 (549)
T KOG0147|consen 257 AEKNRAANA-------------------------SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF--GKIENVQ 309 (549)
T ss_pred HHHHHHHhc-------------------------cccccccccccchhhhhhcccccCchHHHHhhhccCc--ccceeee
Confidence 432220000 0000001111223449999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGT 338 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 338 (417)
+.+| +||+||+|.+.++|.+|++.|||.+|.|+.|+|...........
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~ 363 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKE 363 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccc
Confidence 9887 79999999999999999999999999999999988776554443
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.2e-22 Score=169.77 Aligned_cols=219 Identities=24% Similarity=0.347 Sum_probs=160.5
Q ss_pred CceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 014839 112 GQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (417)
Q Consensus 112 g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~ 191 (417)
+|.|.|+.+.... ....+++|||+.|...-+|+|++.+|..||+|++|.+.+. ..|.+||++||.|.+.-+|..||
T Consensus 2 nrpiqvkpadses---rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSES---RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCcccccccccc---CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 4566776554333 3346789999999999999999999999999999999987 57899999999999999999999
Q ss_pred HHhCCce-eCC--eEEEEEEccCCCCCCCCcCC-----------------------------------------------
Q 014839 192 NDLNGKW-LGN--RQIRCNWAAKGATSGDEKQS----------------------------------------------- 221 (417)
Q Consensus 192 ~~l~g~~-~~g--~~i~v~~~~~~~~~~~~~~~----------------------------------------------- 221 (417)
..|+|.. +-| ..|.|+|++.+++....+..
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999865 444 67889998655332111100
Q ss_pred -------------C---CCccc-----------------hhc-----ccCcccc-------------ccccCcCC-----
Q 014839 222 -------------S---DSKSV-----------------VEL-----TNGISVL-------------FAEDGQEK----- 245 (417)
Q Consensus 222 -------------~---~~~~~-----------------~~~-----~~~~~~~-------------~~~~~~~~----- 245 (417)
. ..... ... .++.... ........
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 0 00000 000 0000000 00000000
Q ss_pred ------------------------------------CCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEE
Q 014839 246 ------------------------------------SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 289 (417)
Q Consensus 246 ------------------------------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v 289 (417)
.-.......+.+|+|||..||.+..+.||.++|-.| |.|.+.
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF--GhivSa 315 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF--GHIVSA 315 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc--cceeee
Confidence 000011255778999999999999999999999999 999999
Q ss_pred Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC
Q 014839 290 RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 336 (417)
Q Consensus 290 ~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 336 (417)
++..| |.|+||.|.++..|..||..|||+.|+-++|+|.+.+++...
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99876 789999999999999999999999999999999998876543
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=7.1e-21 Score=152.06 Aligned_cols=173 Identities=21% Similarity=0.324 Sum_probs=138.0
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
..+++|||+|||.++.+.||.++|.+||.|..|.+... -....||||+|++..+|+.|+..-+|..++|+.|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45678999999999999999999999999999987633 245689999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEE
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 289 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v 289 (417)
..........-...... ...........+.......+|.|.+||.+-+|+||++++.+. |.|...
T Consensus 81 rggr~s~~~~G~y~ggg-------------rgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea--GdvCfa 145 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGG-------------RGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA--GDVCFA 145 (241)
T ss_pred cCCCcccccccccCCCC-------------CCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh--CCeeee
Confidence 87653332221111111 011111122223334445789999999999999999999999 999999
Q ss_pred EeeccccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 014839 290 RVQRDKGFGFVRYSTHPEAALAIQMGNARILC 321 (417)
Q Consensus 290 ~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 321 (417)
.+.+| |.+.|+|...|+.+.|+..|+...+.
T Consensus 146 dv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 146 DVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 99998 69999999999999999999888764
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=1.5e-19 Score=159.52 Aligned_cols=266 Identities=16% Similarity=0.159 Sum_probs=198.7
Q ss_pred EcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC--ceEEEEecccCCCC---
Q 014839 52 VGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASSQR--- 126 (417)
Q Consensus 52 v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~~~~~~~--- 126 (417)
|-|--+.+|.|-|..++...|+|..|.|+++ +.-.|.|||++.+.|++|.+.|||..|.. .+|+|+|+++.+-.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeee
Confidence 4466678999999999999999999988876 55689999999999999999999999873 57899988742000
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 014839 127 ----------------------------------------------------------------------------EDTS 130 (417)
Q Consensus 127 ----------------------------------------------------------------------------~~~~ 130 (417)
....
T Consensus 206 nd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~ 285 (494)
T KOG1456|consen 206 NDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGA 285 (494)
T ss_pred cCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCC
Confidence 0011
Q ss_pred CCceEEECCCCcc-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 131 GHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 131 ~~~~l~v~nlp~~-~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
++..++|.+|... +.-+.|.++|..||.|+.|++++.+ .|.|.|++.+....++|+..|++..+.|.+|.|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 2345899999876 6778999999999999999999764 578999999999999999999999999999999988
Q ss_pred cCCCCCCCCcCCCCCccchhcccCcccccccc---CcCC---CCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCc
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAED---GQEK---SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 283 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~ 283 (417)
+........ ...+..+........ ..+. .......-.++.+.|..-|.|..+|||.|.++|....
T Consensus 361 kQ~~v~~~~--------pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~- 431 (494)
T KOG1456|consen 361 KQNFVSPVQ--------PFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD- 431 (494)
T ss_pred cccccccCC--------ceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC-
Confidence 654433221 111111111111000 0111 1111122346778999999999999999999999874
Q ss_pred cceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe------eeEEeecCC
Q 014839 284 GTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK------PIKCSWGSK 332 (417)
Q Consensus 284 G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~------~l~v~~a~~ 332 (417)
-...++++... ...+.++|++.++|..|+..+|...|.+. .|++.|+.+
T Consensus 432 v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 432 VPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred CCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 23667777654 34689999999999999999999988652 355555543
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.5e-21 Score=181.18 Aligned_cols=267 Identities=21% Similarity=0.335 Sum_probs=206.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhcc-----------C-CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSST-----------G-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF 111 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~-----------G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~ 111 (417)
....+.++|+++|+.++++....+|..- | .|..|.+ +..+++||++|.+.++|..|+. +++..+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~--n~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL--NLEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee--cccccceeEEecCCCchhhhhc-ccchhhC
Confidence 3556789999999999999999999853 3 3666655 4455699999999999999994 9999999
Q ss_pred CceEEEEecccCC--------------------CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCC
Q 014839 112 GQPIKVNWAYASS--------------------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTG 171 (417)
Q Consensus 112 g~~l~v~~~~~~~--------------------~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~ 171 (417)
|..+++....... ..........++|++||...++..+.++...||++....++.|..+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9988887654221 11122334679999999999999999999999999999999999999
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCC
Q 014839 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAP 251 (417)
Q Consensus 172 ~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (417)
.++||||.+|.+......|+..|+|..+.++++.|..+................... ........
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~---------------~i~~~~~q 393 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVP---------------GIPLLMTQ 393 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccc---------------cchhhhcc
Confidence 999999999999999999999999999999999999987766554433331100000 00111112
Q ss_pred CCCCccceEEeeCCC--ccc--------cHHHHHHhhhhcCccceEEEEeecc---------ccEEEEEeCCHHHHHHHH
Q 014839 252 ENNPQYTTVYVGNLS--SEV--------TSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAI 312 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp--~~~--------t~~~L~~~F~~~~~G~i~~v~i~~~---------~g~afV~f~~~~~A~~A~ 312 (417)
....+...|.+.|+= .++ --|+++..+.+| |.|.+|.++++ .|..||+|.+.+++.+|+
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~--g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF--GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc--CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 233334445555541 111 125667778889 99999999887 578999999999999999
Q ss_pred HHhCCCeeCCeeeEEeec
Q 014839 313 QMGNARILCGKPIKCSWG 330 (417)
Q Consensus 313 ~~l~g~~~~g~~l~v~~a 330 (417)
+.|+|+.|.||.|..+|-
T Consensus 472 ~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 472 EELTGRKFANRTVVASYY 489 (500)
T ss_pred HHccCceeCCcEEEEEec
Confidence 999999999999999884
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.1e-21 Score=163.81 Aligned_cols=176 Identities=27% Similarity=0.450 Sum_probs=153.1
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCC-CCC--
Q 014839 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRH-IFG-- 112 (417)
Q Consensus 39 ~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~-i~g-- 112 (417)
++.....+.|+|||+-|...-.|+|++.+|..||+|++|.+.+.. ++|||||+|.+.-+|..||..|||.. +.|
T Consensus 11 dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 11 DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 334444567899999999999999999999999999999999864 58999999999999999999999965 444
Q ss_pred ceEEEEecccC---------------------------------------------------------------------
Q 014839 113 QPIKVNWAYAS--------------------------------------------------------------------- 123 (417)
Q Consensus 113 ~~l~v~~~~~~--------------------------------------------------------------------- 123 (417)
..|.|+++...
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 57888887510
Q ss_pred --------------------------------------------------------------------------------
Q 014839 124 -------------------------------------------------------------------------------- 123 (417)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (417)
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence
Q ss_pred --------------------------CCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEE
Q 014839 124 --------------------------SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFG 177 (417)
Q Consensus 124 --------------------------~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~a 177 (417)
...+...++++|||..||.+..+.||...|-+||.|.+.++..|+.|+.+|.|+
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFG 330 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFG 330 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccccccee
Confidence 001234556789999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 014839 178 FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (417)
Q Consensus 178 fV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~ 214 (417)
||.|.+..++..||..+||..|+=++|+|...+++..
T Consensus 331 FVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 331 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999999998887653
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=2.4e-21 Score=174.09 Aligned_cols=168 Identities=28% Similarity=0.452 Sum_probs=148.4
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
...+|||++|+++++++.|+++|..||+|.+|.+++|+.+++++||+||+|.+.+...+++. ...+.|+|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56789999999999999999999999999999999999999999999999999999999998 56788999999999887
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
+......... .....+|||++||.++++++|+++|++| |.|..+.
T Consensus 84 ~r~~~~~~~~---------------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~--g~v~~~~ 128 (311)
T KOG4205|consen 84 SREDQTKVGR---------------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQF--GKVADVV 128 (311)
T ss_pred Cccccccccc---------------------------------ccceeEEEecCcCCCCchHHHhhhhhcc--ceeEeeE
Confidence 7644332211 1134789999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 335 (417)
++.| +||+||+|.+++..++++.. +-+.|+|+.+.|..|.++..
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred EeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhh
Confidence 8876 79999999999999998765 88899999999999987654
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.85 E-value=8.1e-19 Score=154.94 Aligned_cols=284 Identities=17% Similarity=0.166 Sum_probs=207.9
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHH--hcCCCCCCceEEEEe
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT--LNGRHIFGQPIKVNW 119 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~--l~g~~i~g~~l~v~~ 119 (417)
.....+..|.|++|-..++|.||.+.++.||+|.-|.++.. ++.|+|+|++.+.|.+++.- -+...+.|..-.+.+
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~--~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH--KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc--cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 34566778999999999999999999999999997777654 45899999999999999842 345677888888888
Q ss_pred cccCCCCCCCC----CCceE--EECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014839 120 AYASSQREDTS----GHFNV--FVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (417)
Q Consensus 120 ~~~~~~~~~~~----~~~~l--~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~ 193 (417)
++....++... ++..| .|-|--+.+|.+-|..+....|.|..|.|++. +|. -|.|||++.+.|++|.+.
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhh
Confidence 86544333222 22223 35565677999999999999999999988843 333 599999999999999999
Q ss_pred hCCcee--CCeEEEEEEccCCCCC-----CCCcCCCC---------Ccc---c-----------hhcccCccccccc---
Q 014839 194 LNGKWL--GNRQIRCNWAAKGATS-----GDEKQSSD---------SKS---V-----------VELTNGISVLFAE--- 240 (417)
Q Consensus 194 l~g~~~--~g~~i~v~~~~~~~~~-----~~~~~~~~---------~~~---~-----------~~~~~~~~~~~~~--- 240 (417)
|||..| +.+.|+|+|+++.... .+.+.... ... . .....+.+.....
T Consensus 179 lNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~ 258 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRH 258 (494)
T ss_pred cccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccC
Confidence 999887 4589999999776322 11111100 000 0 0000000000000
Q ss_pred -------cC-----cCCCCCCCCCCCCccceEEeeCCCc-cccHHHHHHhhhhcCccceEEEEeecc-ccEEEEEeCCHH
Q 014839 241 -------DG-----QEKSNEDAPENNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHP 306 (417)
Q Consensus 241 -------~~-----~~~~~~~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~ 306 (417)
.. ........+....+++.+.|.+|.. .++.+.|..+|..| |.|..|++++. .|.|.|++.|..
T Consensus 259 ~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY--GNV~rvkFmkTk~gtamVemgd~~ 336 (494)
T KOG1456|consen 259 GPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY--GNVERVKFMKTKPGTAMVEMGDAY 336 (494)
T ss_pred CCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc--CceeeEEEeecccceeEEEcCcHH
Confidence 00 0000111224456778999999987 56889999999999 99999999988 599999999999
Q ss_pred HHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 307 EAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 307 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
+.++|+..||+..+.|.+|.|.+++...
T Consensus 337 aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 337 AVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHHHHhccCccccceEEEeeccccc
Confidence 9999999999999999999999887543
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.5e-20 Score=150.18 Aligned_cols=148 Identities=22% Similarity=0.363 Sum_probs=129.4
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~-~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
+.+++|||+|||.++.|.||.++|-+||.|..|.+...+. ..||||+|+++.+|..||.-.+|-.+.|..|+|++...-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4578899999999999999999999999999998866543 679999999999999999999999999999999998643
Q ss_pred CC-----------------------CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEE
Q 014839 124 SQ-----------------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180 (417)
Q Consensus 124 ~~-----------------------~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~ 180 (417)
.. ........+|.|++||++.+|+||++.+.+-|.|....+.+| |++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeee
Confidence 21 111223467999999999999999999999999998888877 479999
Q ss_pred eCCHHHHHHHHHHhCCcee
Q 014839 181 FRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 181 f~~~~~A~~a~~~l~g~~~ 199 (417)
|...|+.+-|+.+|+...+
T Consensus 157 ~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeehhhHHHHHHhhccccc
Confidence 9999999999999987765
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=5.9e-21 Score=171.60 Aligned_cols=170 Identities=20% Similarity=0.419 Sum_probs=153.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
+..+|+|++|+|+++++.|+++|..||.|.+|.+++++ +++|+||+|.+++....++. ...+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999975 57899999999999999984 66688999999999988
Q ss_pred cCCCCCCCC---CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014839 122 ASSQREDTS---GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (417)
Q Consensus 122 ~~~~~~~~~---~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (417)
++....... ...+|||++||.++++++++++|.+||.|..+.++.|..+.+++||+||.|.+++.+++++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 766444333 35689999999999999999999999999999999999999999999999999999999998 78889
Q ss_pred eCCeEEEEEEccCCCCCCC
Q 014839 199 LGNRQIRCNWAAKGATSGD 217 (417)
Q Consensus 199 ~~g~~i~v~~~~~~~~~~~ 217 (417)
|.|+.+.|..+.++.....
T Consensus 163 ~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ecCceeeEeeccchhhccc
Confidence 9999999999988765543
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=150.32 Aligned_cols=194 Identities=19% Similarity=0.263 Sum_probs=149.6
Q ss_pred CCceEEECCCCccCCHHHHHH----hhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 131 GHFNVFVGDLSPEVTDATLFA----CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~----~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
+..+|||.||+..+..++|+. +|+.||.|.+|... ++.+.||-|||.|.+.+.|-.|++.|+|..+.|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999988 99999999999888 56799999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCcCC----CCCccchhcc----cCccccc-----cccCcCCCCCCCCCCCCccceEEeeCCCccccHHH
Q 014839 207 NWAAKGATSGDEKQS----SDSKSVVELT----NGISVLF-----AEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273 (417)
Q Consensus 207 ~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 273 (417)
.|+..+...-..... .......... ....... ......... .....++...|++.|||..++.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~--~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF--LAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc--cccCCCCceEEEEecCCcchhHHH
Confidence 999876544332111 0000000000 0000000 000000001 123367778999999999999999
Q ss_pred HHHhhhhcCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeeEEeecC
Q 014839 274 LHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGS 331 (417)
Q Consensus 274 L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~ 331 (417)
|..+|++| ...+.++++.. ++.|||+|.+...|..|...|.|..|- ...++|.+++
T Consensus 163 l~~lf~qf--~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQF--PGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhC--cccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999 88999999886 789999999999999999999999886 8889998875
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=1.6e-18 Score=144.53 Aligned_cols=161 Identities=20% Similarity=0.396 Sum_probs=138.9
Q ss_pred CCCCeEEEcCCCccCCHHHHHH----HHhccCCcceEEEEec-CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 45 STCRSVYVGNIHPQVTNALLQE----VFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~----~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
.++.||||+||...+..++|++ +|+.||.|..|..++. +.+|.|||.|++.+.|..|+..|+|..|.|++++|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3455999999999999999998 9999999999988865 4689999999999999999999999999999999999
Q ss_pred cccCCCC-----------------------------------------------CCCCCCceEEECCCCccCCHHHHHHh
Q 014839 120 AYASSQR-----------------------------------------------EDTSGHFNVFVGDLSPEVTDATLFAC 152 (417)
Q Consensus 120 ~~~~~~~-----------------------------------------------~~~~~~~~l~v~nlp~~~~e~~l~~~ 152 (417)
++.+... ....++..+|+.|||..++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 8743110 11344567999999999999999999
Q ss_pred hcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 014839 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAA 210 (417)
Q Consensus 153 f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~i~v~~~~ 210 (417)
|..|.-...++++..+ ++.|||+|.++..+..|...+++..+. ...+.|.++.
T Consensus 167 f~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999988542 678999999999999999999998886 6777777664
No 54
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=150.74 Aligned_cols=199 Identities=20% Similarity=0.250 Sum_probs=147.5
Q ss_pred CCCceEEECCCCccCCHHHHHHhhc-CCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFS-VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~-~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
...+.+||.|||+++.|.||+++|. +.|+|+.|.++.| ++|++||+|.|||+++|.+++|++.|+.+.+.||+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3446699999999999999999994 6799999999999 7899999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCcCCCCCccc-----------hhc----------ccCccccccccCc------------------------
Q 014839 209 AAKGATSGDEKQSSDSKSV-----------VEL----------TNGISVLFAEDGQ------------------------ 243 (417)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~------------------------ 243 (417)
..........+.-...... ..+ .++.+....+...
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 6553322111111000000 000 0000000000000
Q ss_pred -CCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCC
Q 014839 244 -EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNA 317 (417)
Q Consensus 244 -~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g 317 (417)
........-..|-..++||.||.+.+....|++.|.-. |.|+.+.+..| +|++.++|.++-+|..|+..|++
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA--Gkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA--GKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc--eeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 00000011234556789999999999999999999999 99999988765 79999999999999999999999
Q ss_pred CeeCCeeeEEeecC
Q 014839 318 RILCGKPIKCSWGS 331 (417)
Q Consensus 318 ~~~~g~~l~v~~a~ 331 (417)
.-+..++..+.+.+
T Consensus 279 ~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDR 292 (608)
T ss_pred CCCccccceeeccc
Confidence 88888888888754
No 55
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.78 E-value=8.8e-19 Score=155.23 Aligned_cols=276 Identities=17% Similarity=0.152 Sum_probs=190.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhcc----CCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~----G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
...+..|..++|||..++.+|..||+.. |-+.-|.....+..|.+.|.|.|.|.-+.|++ .+...+.++.|.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeec
Confidence 4556678899999999999999999853 22333334445677999999999999999996 777888899999887
Q ss_pred cccCCC----------C---CCCCCCceEEECCCCccCCHHHHHHhhcCC----CCeeEEEEeecCCCCCcccEEEEEeC
Q 014839 120 AYASSQ----------R---EDTSGHFNVFVGDLSPEVTDATLFACFSVF----PTCSDARVMWDQKTGRSRGFGFVSFR 182 (417)
Q Consensus 120 ~~~~~~----------~---~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~----G~v~~v~~~~d~~~~~~~g~afV~f~ 182 (417)
+....- . -...+---|.+++||++.++.|+.++|..- |..+.+.+++ +.+|+..|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEec
Confidence 654321 0 111223457899999999999999999643 3445555554 357899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEe
Q 014839 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYV 262 (417)
Q Consensus 183 ~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 262 (417)
.+++|+.|+. -+...++-|.|.+-.++.......-...... .+..+........ ... ..-.......+|.+
T Consensus 215 ~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~----pLi~~~~sp~~p~---~p~-~~~p~~~~kdcvRL 285 (508)
T KOG1365|consen 215 CEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSE----PLIPGLTSPLLPG---GPA-RLVPPTRSKDCVRL 285 (508)
T ss_pred CHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccc----cccCCCCCCCCCC---Ccc-ccCCCCCCCCeeEe
Confidence 9999999998 4656677677776655432211100000000 0100000000000 000 11111222578999
Q ss_pred eCCCccccHHHHHHhhhhcCccceEE--EEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 263 GNLSSEVTSVDLHRHFHALCVGTIED--VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 263 ~nLp~~~t~~~L~~~F~~~~~G~i~~--v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
++||+..+.|+|.++|..|. -.|.. |++..+ .|-|||+|.+.++|..|....|.+...+|.|.|--+.
T Consensus 286 RGLPy~AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 286 RGLPYEATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred cCCChhhhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 99999999999999999983 24544 666544 6899999999999999999988888889999996553
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=137.88 Aligned_cols=189 Identities=15% Similarity=0.225 Sum_probs=132.8
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD-QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG---NRQIR 205 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d-~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~~i~ 205 (417)
..-++|||.+||.++...||+.+|..|--.+.+.+... +.....+-+|||.|.+..+|..|+..|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34589999999999999999999999977777766543 333356789999999999999999999999985 78999
Q ss_pred EEEccCCCCCCCCcCCCCCccchhccc---------------------Cccccccc--------------------cCcC
Q 014839 206 CNWAAKGATSGDEKQSSDSKSVVELTN---------------------GISVLFAE--------------------DGQE 244 (417)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~--------------------~~~~ 244 (417)
+++++........+......+...+.. +....... .+..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 999977655544433332111100000 00000000 0000
Q ss_pred CCC------CCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhC
Q 014839 245 KSN------EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGN 316 (417)
Q Consensus 245 ~~~------~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~ 316 (417)
..+ .........+.+|||.||..++||++|+.+|+.| .....++|... -..||++|++.+.|..||..|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~--~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY--PGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC--CCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 000 0011233456799999999999999999999999 55555555444 4579999999999999999999
Q ss_pred CCee
Q 014839 317 ARIL 320 (417)
Q Consensus 317 g~~~ 320 (417)
|..|
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 9876
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=9e-18 Score=136.48 Aligned_cols=86 Identities=41% Similarity=0.621 Sum_probs=80.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
....++|||+|||++++|++|+++|++||.|.++++++|+.+++++|||||+|.+.++|+.|++.+++..|.|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014839 209 AAKGAT 214 (417)
Q Consensus 209 ~~~~~~ 214 (417)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=2.7e-17 Score=150.97 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=130.5
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
....-|.+++||+++|++||.+||+.++ |+++.+. +.+|+..|-|||+|.++|++++|++ .+...+..|.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 4456789999999999999999999984 5664444 4679999999999999999999999 7888899999999877
Q ss_pred cCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE-
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED- 288 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~- 288 (417)
........-+... +........|.+++||+.||++||.++|+.. -.|..
T Consensus 84 ~~~e~d~~~~~~g----------------------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~g 133 (510)
T KOG4211|consen 84 GGAEADWVMRPGG----------------------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDG 133 (510)
T ss_pred CCccccccccCCC----------------------------CCCCCCCceEEecCCCccCcHHHHHHHhcCC--cccccc
Confidence 6554322211111 1111233579999999999999999999988 33333
Q ss_pred EEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 289 VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 289 v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
+.++.+ .|-|||+|++.+.|++|+.. |...|+.|.|.|..+.
T Consensus 134 i~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 134 ILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred eeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 334433 58899999999999999988 8889999999996543
No 59
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.71 E-value=3.8e-16 Score=137.22 Aligned_cols=189 Identities=20% Similarity=0.266 Sum_probs=139.6
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~--------~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 203 (417)
+..|||+|||.++|.+++.++|+++|.|. .|++.++ ..|..+|=|.+.|...+++..|++.|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45699999999999999999999999874 4677877 45999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCcCC------CCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCc----ccc---
Q 014839 204 IRCNWAAKGATSGDEKQS------SDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSS----EVT--- 270 (417)
Q Consensus 204 i~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t--- 270 (417)
|+|+.+.-.......... ........+... .-++ .+....++.....++|.+.|+-. ..+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k-----~~dw--~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQK-----LLDW--RPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHh-----hccc--CCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 999988533222111000 000000000000 0000 01112233344457899999842 112
Q ss_pred ----HHHHHHhhhhcCccceEEEEee--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 271 ----SVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 271 ----~~~L~~~F~~~~~G~i~~v~i~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.++|++-+++| |.|..|.|. ...|.+-|.|.+.++|..+++.|+|+.|+||.|.-+.-
T Consensus 286 ~~dlkedl~eec~K~--G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKF--GQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHHHHHh--CCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 46778889999 999999998 44899999999999999999999999999999987654
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.8e-17 Score=138.69 Aligned_cols=165 Identities=26% Similarity=0.416 Sum_probs=132.9
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~ 213 (417)
.+||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+..+|..|+..+++.++.|-.+.|+|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999999999999999999999999877 5789999999999999999999999999889999987542
Q ss_pred CCCCCcCCCCCccchhcccCccccccccCcCCC-CCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee
Q 014839 214 TSGDEKQSSDSKSVVELTNGISVLFAEDGQEKS-NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 292 (417)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~ 292 (417)
...-. + ..+.... ...-.......+.|.|.|+...+.+.+|.++|+.+ |.+.....
T Consensus 75 ~~~g~-------~-------------~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~--g~~~~~~~- 131 (216)
T KOG0106|consen 75 RGRGR-------P-------------RGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA--GEVTYVDA- 131 (216)
T ss_pred cccCC-------C-------------CCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc--CCCchhhh-
Confidence 22100 0 0000000 00111112233789999999999999999999999 99966666
Q ss_pred ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 293 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 293 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.++++||+|.+.++|.+|++.|+|..+.|+.|.+...
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 6679999999999999999999999999999999543
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.3e-17 Score=139.19 Aligned_cols=151 Identities=28% Similarity=0.478 Sum_probs=130.2
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCC--
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ-- 125 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~-- 125 (417)
..|||++||+.+.+.+|..||..||.+..+.+ ..+|+||+|.+..+|..|+..||++.|.|..+.|.|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 35999999999999999999999999998876 457999999999999999999999999998899998874210
Q ss_pred ---------------CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 014839 126 ---------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (417)
Q Consensus 126 ---------------~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a 190 (417)
.........+.|.+++..+.+.+|.+.|..+|.+..... .++++||+|.+.+++.+|
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhc
Confidence 011234567999999999999999999999999955544 367899999999999999
Q ss_pred HHHhCCceeCCeEEEEEEcc
Q 014839 191 INDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 191 ~~~l~g~~~~g~~i~v~~~~ 210 (417)
+..|++..+.|+.|.+.+..
T Consensus 150 ~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred chhccchhhcCceeeecccC
Confidence 99999999999999995443
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.69 E-value=9.9e-16 Score=126.49 Aligned_cols=154 Identities=21% Similarity=0.364 Sum_probs=122.0
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-----CCEEEEEecCHHHHHHHHHHhcCCCCC---Cc
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIVTLNGRHIF---GQ 113 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~-----~g~afV~F~~~~~A~~Al~~l~g~~i~---g~ 113 (417)
.....-|||||.+||.++...||..+|..|-..+...+....+ +.+|||.|.+..+|..|+..|||..|. +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3455689999999999999999999999988777776654322 369999999999999999999999986 78
Q ss_pred eEEEEecccCCCCC------------------------------------------------------------------
Q 014839 114 PIKVNWAYASSQRE------------------------------------------------------------------ 127 (417)
Q Consensus 114 ~l~v~~~~~~~~~~------------------------------------------------------------------ 127 (417)
.|+++.++.+....
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 89999876321100
Q ss_pred -----------------CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 014839 128 -----------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (417)
Q Consensus 128 -----------------~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a 190 (417)
......+|||.||..+++|++|+.+|+.|.-..-.+|. . + .....||++|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~-~--~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-A-R--GGMPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-c-C--CCcceEeecHHHHHHHHHH
Confidence 00012459999999999999999999999666555544 1 1 2345799999999999999
Q ss_pred HHHhCCcee
Q 014839 191 INDLNGKWL 199 (417)
Q Consensus 191 ~~~l~g~~~ 199 (417)
|..|+|..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999998876
No 63
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=4.9e-16 Score=126.32 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=72.5
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..++|||+|||+++|+++|+++|++| |.|.+++++.+ +|||||+|.+.++|.+|++.||+..|+|++|+|+|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF--GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34789999999999999999999999 99999999865 79999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014839 330 GSKPTP 335 (417)
Q Consensus 330 a~~~~~ 335 (417)
++++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986543
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.1e-15 Score=128.28 Aligned_cols=83 Identities=33% Similarity=0.521 Sum_probs=80.0
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.+..+|.|.||+.+++|+||+++|.+||.|..+.+.+|++||.+||||||.|.+.++|.+||+.|+|.-+++-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014839 210 AKG 212 (417)
Q Consensus 210 ~~~ 212 (417)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=3.8e-14 Score=124.75 Aligned_cols=165 Identities=24% Similarity=0.354 Sum_probs=132.7
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcc--------eEEEEecCC---CCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--------GCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~--------~v~i~~~~~---~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
+.-++.|||.|||.++|.+++.++|+++|.|. .|++.++.. +|-|++.|-..++...|++-|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 55667799999999999999999999999653 366766543 6899999999999999999999999999
Q ss_pred ceEEEEecccCC-----------------------------------CCCCCCCCceEEECCCC--c--cCC-------H
Q 014839 113 QPIKVNWAYASS-----------------------------------QREDTSGHFNVFVGDLS--P--EVT-------D 146 (417)
Q Consensus 113 ~~l~v~~~~~~~-----------------------------------~~~~~~~~~~l~v~nlp--~--~~~-------e 146 (417)
+.|+|..+.-.. ........++|.+.|+= . ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999875110 01112345779999882 1 122 3
Q ss_pred HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 147 ~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
+||++-..+||.|.+|.|. | ..+.|.+-|.|.+.++|..|++.|+|..++||.|.......+
T Consensus 291 edl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 5667778999999999776 3 256889999999999999999999999999999998776554
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=4.9e-15 Score=105.78 Aligned_cols=70 Identities=41% Similarity=0.798 Sum_probs=67.5
Q ss_pred EEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 135 l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
|||+|||+++++++|+++|+.||.|..+.+..+ .+++.+|+|||+|.+.++|+.|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 7889999999999999999999999999999999985
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.5e-15 Score=125.67 Aligned_cols=80 Identities=38% Similarity=0.588 Sum_probs=74.4
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
-++|||+||++++..++|+++|+.||+|++..|+.|+.+|++||||||+|++.+.|.+|++ -.+-.|+||+..|+.+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 3579999999999999999999999999999999999999999999999999999999999 456779999999998865
Q ss_pred C
Q 014839 212 G 212 (417)
Q Consensus 212 ~ 212 (417)
.
T Consensus 91 g 91 (247)
T KOG0149|consen 91 G 91 (247)
T ss_pred c
Confidence 3
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1e-14 Score=116.20 Aligned_cols=79 Identities=30% Similarity=0.533 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCC
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ 125 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~ 125 (417)
-.++|||+||+..+++.||+..|..||+|.+|+|-. ...|||||+|+++.||..|+..|+|+.|.|..|+|++++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 367899999999999999999999999999998877 4579999999999999999999999999999999999986554
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=3.2e-14 Score=101.50 Aligned_cols=70 Identities=39% Similarity=0.705 Sum_probs=64.9
Q ss_pred EEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 135 l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
|+|+|||+++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 89999999999999999999999999999999885
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=125.84 Aligned_cols=103 Identities=28% Similarity=0.426 Sum_probs=86.4
Q ss_pred hcCCCCCCceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCH
Q 014839 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (417)
Q Consensus 105 l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~ 184 (417)
-++....|..+.+..+. ........++|+|+|||+...|-||+..|++||.|.+|.|+.+. .-+||||||+|++.
T Consensus 72 ~~~~~t~g~~~~~~~st---~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~ 146 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPST---NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENP 146 (376)
T ss_pred cCCCCCCCCccccCCCC---cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecCh
Confidence 34555666665555432 22334556789999999999999999999999999999999873 35799999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 185 EDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 185 ~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
+||++|-++|+|..+.||+|.|+.++..
T Consensus 147 ~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 147 ADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hhHHHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999999999876
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.8e-14 Score=102.67 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCCEEEEEecCHHHHHHHHHHhcCCCCCCce
Q 014839 36 GNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (417)
Q Consensus 36 ~~~~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 114 (417)
...+.+-++..++.|||+|||+++|.++..++|.+||+|..|+|-..+ .+|.|||.|++..+|.+|++.|+|..+.++.
T Consensus 7 ~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred ccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 344556667788999999999999999999999999999999997765 4799999999999999999999999999999
Q ss_pred EEEEecccC
Q 014839 115 IKVNWAYAS 123 (417)
Q Consensus 115 l~v~~~~~~ 123 (417)
+.|.+..+.
T Consensus 87 l~vlyyq~~ 95 (124)
T KOG0114|consen 87 LVVLYYQPE 95 (124)
T ss_pred EEEEecCHH
Confidence 999987654
No 72
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2.3e-14 Score=102.30 Aligned_cols=65 Identities=35% Similarity=0.709 Sum_probs=62.4
Q ss_pred EEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 260 l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
|||+|||.++|+++|+++|+.| |.|..+.+..+ +++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF--GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT--STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh--hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 99999999884 79999999999999999999999999999986
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=4e-14 Score=123.72 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=73.0
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
...++|+|.|||+...+-||+.+|++| |.|.+|.|+-+ ||||||+|++.+||++|.+.|||..+.||+|.|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kf--G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKF--GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhh--CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345799999999999999999999999 99999999754 899999999999999999999999999999999998
Q ss_pred CCCCC
Q 014839 331 SKPTP 335 (417)
Q Consensus 331 ~~~~~ 335 (417)
..+..
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 86643
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=5.5e-14 Score=122.10 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=69.5
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
++|||+|||+.+|+++|+++|+.| |.|.+|+|.++ +|||||+|.++++|..|+. |||..|.|+.|+|.++..-.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~--G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFS--GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 689999999999999999999999 99999999887 6999999999999999995 89999999999999987543
No 75
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.6e-15 Score=121.42 Aligned_cols=86 Identities=27% Similarity=0.525 Sum_probs=79.7
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.++.-|||+|||++.||.||.-.|+.||+|.+|.+++|+.||+++||||+.|++..+...|+.+|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCCCC
Q 014839 210 AKGATS 215 (417)
Q Consensus 210 ~~~~~~ 215 (417)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 554433
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=126.27 Aligned_cols=146 Identities=29% Similarity=0.452 Sum_probs=113.5
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
.++|||+|||.++++++|+++|..||.|..+.+..|+.+++++|||||+|.+.+++..|+..++|..+.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999764
Q ss_pred CCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEe
Q 014839 212 GATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 291 (417)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i 291 (417)
........... ......................+++.+++..++..++...|..+ |.+....+
T Consensus 195 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNN---------------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR--GDIVRASL 257 (306)
T ss_pred ccccccccccc---------------cchhhhccccccccccccccceeeccccccccchhHHHHhcccc--ccceeeec
Confidence 00000000000 00000000011222233445789999999999999999999999 89977777
Q ss_pred ecc
Q 014839 292 QRD 294 (417)
Q Consensus 292 ~~~ 294 (417)
...
T Consensus 258 ~~~ 260 (306)
T COG0724 258 PPS 260 (306)
T ss_pred cCC
Confidence 655
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.8e-14 Score=121.15 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=71.1
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.++|||+|||+.++|++|+++|+.||.|.+|+|..++ .+|||||+|.++++|..|+. |+|..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5799999999999999999999999999999999886 57999999999999999995 9999999999999997643
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=5.9e-14 Score=121.15 Aligned_cols=90 Identities=20% Similarity=0.371 Sum_probs=82.9
Q ss_pred CCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014839 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (417)
Q Consensus 124 ~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 203 (417)
.......+-+||||.-|+++++|.+|+..|+.||+|..|+|++|+.||+++|||||+|+++.+...|.+..+|..|+|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 33444577789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 014839 204 IRCNWAAKGA 213 (417)
Q Consensus 204 i~v~~~~~~~ 213 (417)
|.|.+-....
T Consensus 173 i~VDvERgRT 182 (335)
T KOG0113|consen 173 ILVDVERGRT 182 (335)
T ss_pred EEEEeccccc
Confidence 9999876543
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=9.8e-14 Score=100.57 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=68.5
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
.+.|||+|||+++|.|+..++|.+| |.|..|+|... +|.|||.|++..+|++|+..|+|..+.++.|.|-|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGky--g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKY--GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcc--cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3679999999999999999999999 99999999765 8999999999999999999999999999999998743
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.51 E-value=1.9e-14 Score=135.45 Aligned_cols=83 Identities=34% Similarity=0.641 Sum_probs=79.9
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.||+++||||++|.+.+++.+|++.|+|..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCC
Q 014839 213 ATS 215 (417)
Q Consensus 213 ~~~ 215 (417)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 553
No 81
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.50 E-value=5.8e-13 Score=126.96 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=126.9
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~ 213 (417)
.+-+.+++++.++.|++++|... .+....|..+...+...|.++|+|....++.+|+. -+...+-.|.+.+.......
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccc
Confidence 37788999999999999999754 34555666665555558899999999999999988 45566667777776554332
Q ss_pred CCCCCcC-CCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE-EEe
Q 014839 214 TSGDEKQ-SSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRV 291 (417)
Q Consensus 214 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~-v~i 291 (417)
....... ............+... .............+.....+.+|||..||..+++.++.++|... -.|++ |.|
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~-~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~--~~Ved~I~l 467 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPI-APPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA--AAVEDFIEL 467 (944)
T ss_pred cccCccccccCCCCcccccCCCCC-CCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh--hhhhheeEe
Confidence 2211110 0000000000000000 00011111111233445566899999999999999999999987 56666 555
Q ss_pred ecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 292 QRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 292 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
-+. ++.|||.|.+++++.+|...-+.+.++.|.|+|.-
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 432 68999999999999999887778888999999964
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=3.4e-14 Score=116.15 Aligned_cols=88 Identities=28% Similarity=0.479 Sum_probs=81.6
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
.+.+.-.+|.|.||-+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|.+|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014839 207 NWAAKGAT 214 (417)
Q Consensus 207 ~~~~~~~~ 214 (417)
..+.-...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 98865543
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=5.8e-14 Score=128.83 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCH--HHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDR--RSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~--~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
...+|||+||++.++++||...|..||.|.+|.|++...+|||||+|.+. .++.+||..|||..+.|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 44679999999999999999999999999999999888899999999987 7899999999999999999999998753
No 84
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.49 E-value=6.7e-13 Score=126.58 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=124.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
+...+-+.+++++..+.|+++||... .|..+.+..+. ..|-++|+|....++.+|++ .|...+..+.+.+....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34568888999999999999999753 35555554432 36899999999999999995 77788888887776543
Q ss_pred cC------------------------------------CCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeE-EEE
Q 014839 122 AS------------------------------------SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARV 164 (417)
Q Consensus 122 ~~------------------------------------~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~-v~~ 164 (417)
.. ..+.....+.+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 11 00112234578999999999999999999999888887 555
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 165 ~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
-+. -+++.++.|||+|..++.+..|...-+.+.++.|.|+|+-+
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 444 56788999999999999998888766677788889999766
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.1e-13 Score=110.49 Aligned_cols=75 Identities=33% Similarity=0.589 Sum_probs=70.2
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
.++|||+||+..+++.||..+|..| |.|..|-|.+. .|||||+|+++.+|..|+..|+|..|+|..|+|++.+-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y--G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY--GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc--CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4789999999999999999999999 99999988766 799999999999999999999999999999999987643
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.5e-13 Score=96.87 Aligned_cols=65 Identities=32% Similarity=0.672 Sum_probs=60.2
Q ss_pred EEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 260 l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
|+|+|||.++++++|+++|+.+ |.|..+++..+ +|+|||+|.+.++|.+|++.++|..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~--g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF--GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS--SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999 99999999887 69999999999999999999999999999985
No 87
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.8e-13 Score=113.92 Aligned_cols=77 Identities=32% Similarity=0.458 Sum_probs=73.1
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...++|.|.||+.++++++|.++|.+| |.|..+.|.+| ||||||.|.+.++|.+||+.|||+-++.-.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~f--g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPF--GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhcc--CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 355789999999999999999999999 99999999988 8999999999999999999999999999999999
Q ss_pred ecCCC
Q 014839 329 WGSKP 333 (417)
Q Consensus 329 ~a~~~ 333 (417)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.4e-13 Score=103.88 Aligned_cols=82 Identities=28% Similarity=0.448 Sum_probs=77.3
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
.+.+|||+||+..++|+.|.++|+++|+|..|.|-.|+.+..+=|||||+|-+.++|..|++.++|..++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45789999999999999999999999999999999998888899999999999999999999999999999999999875
Q ss_pred CC
Q 014839 211 KG 212 (417)
Q Consensus 211 ~~ 212 (417)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 44
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=2e-13 Score=121.58 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=126.6
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhcc----CCcceEEEEec---CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~----G~v~~v~i~~~---~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
..-.|.+++||+++++.|+.+||..- |..+.|.++.. +..|-|||.|..+++|..|+. .|...|.-|.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34568999999999999999999632 24455666654 346899999999999999995 55556665666665
Q ss_pred ecccC----------------------------CCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCC-e--eEEEEeec
Q 014839 119 WAYAS----------------------------SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-C--SDARVMWD 167 (417)
Q Consensus 119 ~~~~~----------------------------~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-v--~~v~~~~d 167 (417)
+++.. ..-.......+|.+++||++.+.+||.++|..|.. | ..|.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 54310 11112233568999999999999999999998853 3 33777777
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 168 ~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
.-|+..|-|||+|.++|+|..|....+++...+|.|.|-.+..
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 6789999999999999999999999998888899999876643
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.2e-12 Score=123.97 Aligned_cols=169 Identities=21% Similarity=0.347 Sum_probs=132.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
.-...+++|++||..++++.++++...||++....++.+. ++||||.+|.++.....|+..|||..+.++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4455679999999999999999999999999999998875 479999999999999999999999999999999998
Q ss_pred cccCCCCC---------------------CCCCCceEEECCC--Ccc-CCH-------HHHHHhhcCCCCeeEEEEeecC
Q 014839 120 AYASSQRE---------------------DTSGHFNVFVGDL--SPE-VTD-------ATLFACFSVFPTCSDARVMWDQ 168 (417)
Q Consensus 120 ~~~~~~~~---------------------~~~~~~~l~v~nl--p~~-~~e-------~~l~~~f~~~G~v~~v~~~~d~ 168 (417)
+....... ...+...|.+.|+ |.+ .++ ++++.-+++||.|.+|.+.++.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 75432111 1112222333333 111 112 3455667899999999998762
Q ss_pred ---CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 169 ---KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 169 ---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
......|..||+|.+.+++++|++.|+|..+.||.+...|-...
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 22345678999999999999999999999999999999987643
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-13 Score=113.60 Aligned_cols=87 Identities=36% Similarity=0.539 Sum_probs=81.7
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
...++|||++|..+++|.-|...|=+||.|.+|.+..|.+++++|||+||+|.-.|||..||.++|+.++.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014839 210 AKGATSG 216 (417)
Q Consensus 210 ~~~~~~~ 216 (417)
.+.....
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8765443
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1.7e-12 Score=119.52 Aligned_cols=146 Identities=25% Similarity=0.375 Sum_probs=115.0
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc-
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY- 121 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~- 121 (417)
.++|||+|||+++++++|.++|..||.|..+.+..++ .+|+|||+|.+.++|..|++.++|..|.|+.|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999998874 57999999999999999999999999999999999953
Q ss_pred ---cCCCCC-----------------CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEe
Q 014839 122 ---ASSQRE-----------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181 (417)
Q Consensus 122 ---~~~~~~-----------------~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f 181 (417)
...... .......+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 221111 123346799999999999999999999999997776665433333444444444
Q ss_pred CCHHHHHHHHH
Q 014839 182 RNQEDAQSAIN 192 (417)
Q Consensus 182 ~~~~~A~~a~~ 192 (417)
.....+.....
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 44444444443
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=3.3e-13 Score=110.41 Aligned_cols=79 Identities=28% Similarity=0.487 Sum_probs=72.9
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
........|.|.||.+.++.++|+.+|++| |.|-+|.|++| +|||||.|.+..+|+.|++.|+|..++|+.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekY--G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKY--GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHh--CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 344455789999999999999999999999 99999999988 7999999999999999999999999999999
Q ss_pred EEeecCC
Q 014839 326 KCSWGSK 332 (417)
Q Consensus 326 ~v~~a~~ 332 (417)
+|.+|+-
T Consensus 86 rVq~ary 92 (256)
T KOG4207|consen 86 RVQMARY 92 (256)
T ss_pred eehhhhc
Confidence 9988763
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=111.74 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
...+|+|+||++++++++|+++|+.||.|.+|+|++| ++.++||||+|.++++++.|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4578999999999999999999999999999999987 4556899999999999999997 99999999999998775
Q ss_pred CC
Q 014839 211 KG 212 (417)
Q Consensus 211 ~~ 212 (417)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 95
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.1e-13 Score=100.81 Aligned_cols=73 Identities=33% Similarity=0.494 Sum_probs=68.6
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..++|||+||++.++||.|.++|+.. |+|..|.+--| -|||||+|.+.++|..|++.++|..++.++|++.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c--G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC--GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc--cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 44899999999999999999999999 99999988766 38999999999999999999999999999999998
Q ss_pred c
Q 014839 330 G 330 (417)
Q Consensus 330 a 330 (417)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=8.9e-13 Score=121.16 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=70.3
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCH--HHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTH--PEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
...+|||+||++.++++||+.+|+.| |.|.+|.|++. ||||||+|.+. .++.+||..|||..+.||.|+|..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF--GsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM--GTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 44789999999999999999999999 99999999987 89999999987 68999999999999999999999887
Q ss_pred C
Q 014839 332 K 332 (417)
Q Consensus 332 ~ 332 (417)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.3e-12 Score=91.98 Aligned_cols=72 Identities=43% Similarity=0.762 Sum_probs=67.4
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
+|+|+|||..+++++|+++|..||.|..+.+..++ +.++|+|||+|.+.++|..|++.+++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999775 7889999999999999999999999999999998873
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=7.5e-13 Score=100.76 Aligned_cols=84 Identities=23% Similarity=0.457 Sum_probs=78.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
...+.-|||.++....+|++|.+.|..||+|.++.+-.|+.||-.+||++|+|.+.+.|..|+..+||..+.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014839 209 AAKG 212 (417)
Q Consensus 209 ~~~~ 212 (417)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8543
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.2e-11 Score=116.02 Aligned_cols=159 Identities=22% Similarity=0.210 Sum_probs=109.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
....++|+|-|||.++++++|+.+|+.||+|..|+.-.. .++.+||+|-|..+|..|++.|++..|.|+.|+.......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 455789999999999999999999999999998655333 4689999999999999999999999999998882211110
Q ss_pred C-------------------CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCH
Q 014839 124 S-------------------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (417)
Q Consensus 124 ~-------------------~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~ 184 (417)
. .....-....++.- |++..+..-++-.+.-+|.+.. + +++.-...-|++|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~-----~~~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-R-----ETPLLNHQRFVEFADN 223 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-c-----cccchhhhhhhhhccc
Confidence 0 00111112234443 8888777556666666676654 2 2222222567888888
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 185 EDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 185 ~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
.++..+... .|..+.|....+.++.+
T Consensus 224 ~s~a~~~~~-~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 224 RSYAFSEPR-GGFLISNSSGVITFSGP 249 (549)
T ss_pred cchhhcccC-CceecCCCCceEEecCC
Confidence 888666552 36666666666666544
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=2.7e-12 Score=109.74 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=67.7
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
+.+|+|+||++.+|+++|+++|+.| |.|.+|+|.+| +++|||+|.++++|..|+ .|+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~--G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHC--GAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhc--CCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4789999999999999999999999 99999999988 589999999999999998 6899999999999987553
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.38 E-value=2.8e-12 Score=86.78 Aligned_cols=55 Identities=31% Similarity=0.652 Sum_probs=52.0
Q ss_pred HHHhhhhcCccceEEEEeeccc-cEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 274 LHRHFHALCVGTIEDVRVQRDK-GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 274 L~~~F~~~~~G~i~~v~i~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
|+++|++| |.|..+.+.+++ ++|||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 1 L~~~f~~f--G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF--GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT--S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc--ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999 999999999987 99999999999999999999999999999999985
No 102
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.4e-12 Score=91.11 Aligned_cols=68 Identities=38% Similarity=0.719 Sum_probs=64.5
Q ss_pred eEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccc----cEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK----GFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 259 ~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
+|+|+|||..+++++|+++|+.| |.|.++.+..++ |+|||+|.+.++|.+|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~--g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF--GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999 999999999875 999999999999999999999999999999874
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=3e-12 Score=91.07 Aligned_cols=71 Identities=42% Similarity=0.746 Sum_probs=67.0
Q ss_pred ECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 137 VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 137 v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999998873
No 104
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.3e-13 Score=134.77 Aligned_cols=229 Identities=20% Similarity=0.208 Sum_probs=187.5
Q ss_pred CCCCeEEEcCCCccCCHH-HHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 45 STCRSVYVGNIHPQVTNA-LLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~-~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
...+...+.++.+...+. ..+..|..+|.|+.|++...+ ...+.++.+....++..+.. ..+..+.++...|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 344567777887776665 677899999999999887633 23488899999999999984 888889998888887
Q ss_pred cccCCCCCCC-------CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014839 120 AYASSQREDT-------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (417)
Q Consensus 120 ~~~~~~~~~~-------~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (417)
+.++...... ....++||+||++.+.+.||...|..+|.+..+++......++.||+||++|.+.+++.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 7665433222 223579999999999999999999999999888877666778999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHH
Q 014839 193 DLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 272 (417)
Q Consensus 193 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 272 (417)
..++..++ ...|+|.|.|+..|.+
T Consensus 728 f~d~~~~g--------------------------------------------------------K~~v~i~g~pf~gt~e 751 (881)
T KOG0128|consen 728 FRDSCFFG--------------------------------------------------------KISVAISGPPFQGTKE 751 (881)
T ss_pred hhhhhhhh--------------------------------------------------------hhhhheeCCCCCCchH
Confidence 55544333 0459999999999999
Q ss_pred HHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 273 DLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 273 ~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
+|+.+|+++ |.+++++++.. +|.++|.|.++.++.++...+++..+.-+.+.|..+.+
T Consensus 752 ~~k~l~~~~--gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 752 ELKSLASKT--GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred HHHhhcccc--CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999 99999987654 79999999999999999998888888888888877655
No 105
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-12 Score=108.07 Aligned_cols=86 Identities=36% Similarity=0.575 Sum_probs=78.7
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..++|||++|..++++.-|...|=+| |.|.+|.++.| |||+||+|...|+|..||..||+.++.||.|+|.|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPF--GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPF--GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccc--cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34789999999999999999999999 99999999877 89999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCC
Q 014839 330 GSKPTPPGTSSTPL 343 (417)
Q Consensus 330 a~~~~~~~~~~~~~ 343 (417)
|+|......+..|.
T Consensus 87 AkP~kikegsqkPv 100 (298)
T KOG0111|consen 87 AKPEKIKEGSQKPV 100 (298)
T ss_pred cCCccccCCCCCCc
Confidence 99887666555554
No 106
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=6.5e-12 Score=105.43 Aligned_cols=74 Identities=31% Similarity=0.540 Sum_probs=67.0
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..++|||++|+..++.|+|+++|++| |+|.++.|+.| |||+||+|.|.+.|.+|++- -.-.|+||+..|.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf--GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF--GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh--CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34789999999999999999999999 99999999866 89999999999999999986 45689999999988
Q ss_pred cCC
Q 014839 330 GSK 332 (417)
Q Consensus 330 a~~ 332 (417)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 764
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.9e-11 Score=87.61 Aligned_cols=74 Identities=43% Similarity=0.800 Sum_probs=68.6
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 7799999999999999999999999999999999864
No 108
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=6.6e-12 Score=95.66 Aligned_cols=79 Identities=29% Similarity=0.493 Sum_probs=72.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
.+..|||.+++...|+++|.+.|..| |.|+.+++-.| +|||+|+|++.++|..|+..|||..|.|..|.|.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dy--GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADY--GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhc--ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34689999999999999999999999 99999998766 79999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014839 330 GSKPTPP 336 (417)
Q Consensus 330 a~~~~~~ 336 (417)
+-.+.++
T Consensus 149 ~Fv~gp~ 155 (170)
T KOG0130|consen 149 CFVKGPE 155 (170)
T ss_pred EEecCCc
Confidence 9765553
No 109
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.6e-11 Score=106.28 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=73.6
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
...+.+||||.-|+++++|.+|+..|+.| |.|+.|+|++| +|||||+|+++.+...|.+..+|..|+|+.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~Y--G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKY--GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhc--CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 34677999999999999999999999999 99999999988 79999999999999999999999999999999
Q ss_pred EeecCCC
Q 014839 327 CSWGSKP 333 (417)
Q Consensus 327 v~~a~~~ 333 (417)
|.+-+-.
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 9886543
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=9.1e-12 Score=84.29 Aligned_cols=56 Identities=38% Similarity=0.653 Sum_probs=51.3
Q ss_pred HHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 64 LQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 64 L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
|+++|++||+|.++++.+++ +++|||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997766 689999999999999999999999999999999985
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=1.9e-11 Score=87.66 Aligned_cols=71 Identities=32% Similarity=0.717 Sum_probs=66.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 49 ~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
+|+|+|||..+++++|+++|+.+|+|..+.+..++. .++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999988763 78999999999999999999999999999998864
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=2e-11 Score=86.59 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=55.9
Q ss_pred HHHHHHhhc----CCCCeeEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 146 DATLFACFS----VFPTCSDAR-VMWDQKT--GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 146 e~~l~~~f~----~~G~v~~v~-~~~d~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
+++|+++|+ .||.|.++. ++.++.+ ++++||+||+|.+.++|.+|++.|+|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999995 7777666 899999999999999999999999999999999976
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.2e-10 Score=108.61 Aligned_cols=149 Identities=22% Similarity=0.279 Sum_probs=116.8
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec-------CCCC---EEEEEecCHHHHHHHHHHhcC---C-
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK-------DKSS---YGFVDYFDRRSAALAIVTLNG---R- 108 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~-------~~~g---~afV~F~~~~~A~~Al~~l~g---~- 108 (417)
..+-+++|||++||++++|+.|...|..||.+. |.+..+ ..+| |+|+-|+++.....-+..+.- .
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 356678999999999999999999999999776 555421 1245 999999999999887765432 1
Q ss_pred -------CCCCceEEEEeccc------CCCCCCCCCCceEEECCCCccCCHHHHHHhhc-CCCCeeEEEEeecCCCCCcc
Q 014839 109 -------HIFGQPIKVNWAYA------SSQREDTSGHFNVFVGDLSPEVTDATLFACFS-VFPTCSDARVMWDQKTGRSR 174 (417)
Q Consensus 109 -------~i~g~~l~v~~~~~------~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~-~~G~v~~v~~~~d~~~~~~~ 174 (417)
.+..+.|.|..... ......-++.+||||++||.-++.++|-.+|+ -||.|..+-|..|++-+.++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 11223333332111 01223456789999999999999999999998 79999999999999999999
Q ss_pred cEEEEEeCCHHHHHHHHH
Q 014839 175 GFGFVSFRNQEDAQSAIN 192 (417)
Q Consensus 175 g~afV~f~~~~~A~~a~~ 192 (417)
|-|-|.|.+...-.+||.
T Consensus 414 GaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcceeeecccHHHHHHHh
Confidence 999999999999999998
No 114
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=1.8e-11 Score=86.99 Aligned_cols=67 Identities=36% Similarity=0.701 Sum_probs=61.9
Q ss_pred EcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 52 VGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 52 v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
|+|||..+++++|+++|+.||+|..+++..++. +++|||+|.+.++|..|++.+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988654 6899999999999999999999999999998873
No 115
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=8.7e-13 Score=105.83 Aligned_cols=81 Identities=28% Similarity=0.479 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
-..+.-|||+|||++.||.||.-.|++||.|+.|.+++|+ ++||||+.|++..+...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 4567789999999999999999999999999999999986 579999999999999999999999999999999998
Q ss_pred cccCC
Q 014839 120 AYASS 124 (417)
Q Consensus 120 ~~~~~ 124 (417)
.....
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65443
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.5e-10 Score=106.41 Aligned_cols=161 Identities=23% Similarity=0.297 Sum_probs=112.8
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEe-ecCCCC--Cccc---EEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM-WDQKTG--RSRG---FGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~-~d~~~~--~~~g---~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
.....++|||++||++++|+.|...|..||.+. |... +....+ .++| |+|+-|+++..+..-+..+.- ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 344568899999999999999999999999874 2222 111111 3567 999999999999888776543 33
Q ss_pred eEEEEEEccCCCCCCC----CcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHh
Q 014839 202 RQIRCNWAAKGATSGD----EKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 277 (417)
Q Consensus 202 ~~i~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 277 (417)
..+.+..+.+...... .+...+.. . -........+.+||||++||..++.++|-.+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~-------------------f-v~d~sq~lDprrTVFVGgvprpl~A~eLA~i 390 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSD-------------------F-VLDHNQPIDPRRTVFVGGLPRPLTAEELAMI 390 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccch-------------------h-hhccCcccCccceEEecCCCCcchHHHHHHH
Confidence 3343433332222111 00000000 0 0012334456689999999999999999999
Q ss_pred hh-hcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHH
Q 014839 278 FH-ALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 278 F~-~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~ 314 (417)
|+ -| |.|.++.|..| +|-|-|+|.+...-.+||..
T Consensus 391 md~ly--GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 391 MEDLF--GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHhc--CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99 56 99999999887 79999999999999999885
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2.7e-12 Score=106.07 Aligned_cols=147 Identities=24% Similarity=0.352 Sum_probs=122.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
...+||+|.|+-..++|+-|.++|-..|+|..|.|..++ +..||||+|+++.....|++.+||..+.+.++.+.+-..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 446899999999999999999999999999999887765 345999999999999999999999999999988874332
Q ss_pred CCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014839 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (417)
Q Consensus 123 ~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 202 (417)
... .-|...++++.+...|+.-|+++.+++.++ .+|+++.++|+.+...-..-.++...++....-+
T Consensus 87 ~sh------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 87 NSH------------APLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred CCc------------chhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 211 016667899999999999999999999988 4589999999999988888888887666654433
Q ss_pred EE
Q 014839 203 QI 204 (417)
Q Consensus 203 ~i 204 (417)
++
T Consensus 154 ~~ 155 (267)
T KOG4454|consen 154 KV 155 (267)
T ss_pred Cc
Confidence 33
No 118
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=4e-11 Score=113.20 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=71.1
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
+.+||+|+|+++++++|.++|+.. |.|.++++..| +||||++|.+.++|.+|++.|||.++.||+|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~--g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV--GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc--CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 789999999999999999999999 99999999877 7999999999999999999999999999999999987
Q ss_pred CCC
Q 014839 332 KPT 334 (417)
Q Consensus 332 ~~~ 334 (417)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 543
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.17 E-value=3e-11 Score=102.33 Aligned_cols=162 Identities=30% Similarity=0.461 Sum_probs=127.7
Q ss_pred EEEcCCCccCCHHH-H--HHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 50 VYVGNIHPQVTNAL-L--QEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 50 v~v~nLp~~~~e~~-L--~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.++.++-.++..+- | ...|+.|..+...++++++ ..+++|+.|.....-.++-..-+++++...+|+......-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34445444443332 3 6777777777777777764 3689999999988777777767778887777776654321
Q ss_pred ---CCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 124 ---SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 124 ---~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
...+-...+.+||++.|..+++.+.|...|.+|-.....++++|++||+++||+||-|.+..|+.+|+..++|..++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 12233456789999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccC
Q 014839 201 NRQIRCNWAAK 211 (417)
Q Consensus 201 g~~i~v~~~~~ 211 (417)
.|+|++..+.-
T Consensus 259 srpiklRkS~w 269 (290)
T KOG0226|consen 259 SRPIKLRKSEW 269 (290)
T ss_pred cchhHhhhhhH
Confidence 99998865543
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=2.4e-10 Score=94.20 Aligned_cols=86 Identities=22% Similarity=0.390 Sum_probs=78.8
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCC-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVF-PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.......-+++..+|.-..+.++..+|..| |.|..+++-++++||.++|||||+|++++.|.-|-+.||+..+.|+.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 334445679999999999999999999998 8888899989999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 014839 206 CNWAAKG 212 (417)
Q Consensus 206 v~~~~~~ 212 (417)
|++..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998776
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.1e-11 Score=119.52 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=120.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEE----ecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI----KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~----~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
+...++||+||+..+.+.||...|..+|.+..+.+. .++-+|.|||+|.+++++..|+.-.+ ..+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhhh-------
Confidence 334679999999999999999999999866555443 33457999999999999999997444 444442
Q ss_pred ccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
..|+|+|.|+..|.++++.++.++|.+.+.+++.. ..|+++|.++|.|.++.++.++....+...+.
T Consensus 737 ------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 737 ------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhh
Confidence 35999999999999999999999999999987765 67999999999999999999998877777776
Q ss_pred CeEEEEEEccC
Q 014839 201 NRQIRCNWAAK 211 (417)
Q Consensus 201 g~~i~v~~~~~ 211 (417)
-+.+.|..+.+
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 66666666544
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-10 Score=102.45 Aligned_cols=84 Identities=27% Similarity=0.441 Sum_probs=79.5
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
.++.+.|||..|.+-++.+||.-+|+.||.|.+|.|++|.+||.+..||||+|.+.++++.|.-.+++..|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 014839 209 AAKG 212 (417)
Q Consensus 209 ~~~~ 212 (417)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8543
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.9e-10 Score=110.43 Aligned_cols=105 Identities=23% Similarity=0.327 Sum_probs=85.7
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~ 127 (417)
+||||++|+.+++|.||.++|+.||.|.+|.++. +++||||.+.+-.+|.+|+..|++..+.++.|+|.|+-..-.+.
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 8999999999999999999999999999998865 56799999999999999999999999999999999997665444
Q ss_pred --CCCCCceEEECCCCccCCHHHHHHhhc
Q 014839 128 --DTSGHFNVFVGDLSPEVTDATLFACFS 154 (417)
Q Consensus 128 --~~~~~~~l~v~nlp~~~~e~~l~~~f~ 154 (417)
..--...+=|.-||++.-..|+..++.
T Consensus 500 e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 112223345667777754455666654
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=4.8e-10 Score=79.48 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=49.0
Q ss_pred HHHHHHhhh----hcCccceEEEE-eec--------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 271 SVDLHRHFH----ALCVGTIEDVR-VQR--------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 271 ~~~L~~~F~----~~~~G~i~~v~-i~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
+++|+++|+ .| |.|.++. +.. .+|++||+|.+.++|.+|++.|||+.+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~f--G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF--GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc--CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 99 9999985 332 27999999999999999999999999999999873
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=6.2e-10 Score=98.62 Aligned_cols=80 Identities=31% Similarity=0.600 Sum_probs=71.5
Q ss_pred CCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHh-CCCeeCCeeeEEee
Q 014839 251 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSW 329 (417)
Q Consensus 251 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~ 329 (417)
+.......+|||++|-..+++.+|+++|.+| |.|.++++...+++|||+|.+.+.|..|.+.+ +...|+|++|+|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqy--Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQY--GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhc--CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 3444556899999999999999999999999 99999999999999999999999999987765 44478999999999
Q ss_pred cCC
Q 014839 330 GSK 332 (417)
Q Consensus 330 a~~ 332 (417)
+++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=1.7e-10 Score=113.86 Aligned_cols=162 Identities=19% Similarity=0.325 Sum_probs=138.1
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
..+++||++||+..+++.+|+..|..+|.|.+|.|.+. .-+...-|+||.|.+...+..|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 44688999999999999999999999999999988755 23455668999999999999999989988886655555544
Q ss_pred cCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEE
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 289 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v 289 (417)
..+ ....+.+|+++|+..+....|...|..| |.|..|
T Consensus 449 ~~k-----------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~f--Gpir~I 485 (975)
T KOG0112|consen 449 QPK-----------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRF--GPIRII 485 (975)
T ss_pred ccc-----------------------------------------cccceeeccCCCCCCChHHHHHHHhhcc--Ccceee
Confidence 321 1123679999999999999999999999 999999
Q ss_pred EeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeecCCCCC
Q 014839 290 RVQRDKGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTP 335 (417)
Q Consensus 290 ~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 335 (417)
.+....-|++|.|.+...+..|++.|-|..|+| ++|+|.|+.++..
T Consensus 486 dy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 486 DYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 998888899999999999999999999999976 7799999987653
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.05 E-value=4.2e-10 Score=109.30 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=74.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 335 (417)
..+||||+.|+..+++.||.++|+.| |.|.+|.+...+|||||++.+..+|.+|+..|+...+.++.|+|.|+.....
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feef--GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEF--GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhc--ccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 34799999999999999999999999 9999999999999999999999999999999999999999999999987664
Q ss_pred C
Q 014839 336 P 336 (417)
Q Consensus 336 ~ 336 (417)
.
T Consensus 498 k 498 (894)
T KOG0132|consen 498 K 498 (894)
T ss_pred c
Confidence 3
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=2.3e-09 Score=95.09 Aligned_cols=82 Identities=18% Similarity=0.408 Sum_probs=72.2
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHH-hcCCCCCCceEEE
Q 014839 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT-LNGRHIFGQPIKV 117 (417)
Q Consensus 39 ~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~-l~g~~i~g~~l~v 117 (417)
-.+..+...+||||++|-..++|.+|++.|.+||+|.++.+...+ ++|||+|.+.+.|+.|.+. ++...|.|++|+|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 344567778999999999999999999999999999999997754 5999999999999999855 5667789999999
Q ss_pred Eeccc
Q 014839 118 NWAYA 122 (417)
Q Consensus 118 ~~~~~ 122 (417)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99988
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=5.7e-10 Score=110.19 Aligned_cols=162 Identities=19% Similarity=0.325 Sum_probs=139.8
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 41 ~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
..+...++||+++||+..+++.+|+..|..+|.|.+|.|...+ ...|+||.|.+...+-.|...+.+..|....+++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3456888999999999999999999999999999999886643 2459999999999999999899999998878888
Q ss_pred EecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 014839 118 NWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (417)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (417)
.+... .....+.+++++|+..+....|...|..||.|..|.+. +..-|++|.|++...+..|++.+.|.
T Consensus 446 glG~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 446 GLGQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcC
Confidence 77654 34566789999999999999999999999999887655 33569999999999999999999999
Q ss_pred eeCC--eEEEEEEccCCC
Q 014839 198 WLGN--RQIRCNWAAKGA 213 (417)
Q Consensus 198 ~~~g--~~i~v~~~~~~~ 213 (417)
.++| +.++|.++....
T Consensus 515 p~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 515 PLGGPPRRLRVDLASPPG 532 (975)
T ss_pred cCCCCCcccccccccCCC
Confidence 9976 678888886543
No 130
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.5e-10 Score=94.56 Aligned_cols=142 Identities=24% Similarity=0.296 Sum_probs=116.8
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
+..++|||.|+...++|+-|.++|-.-|+|..|.|..+ ..++.+ ||||+|.++....-|++.+||..+.++.+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 45689999999999999999999999999999988866 556667 9999999999999999999999999988877643
Q ss_pred cCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeC----CCccccHHHHHHhhhhcCccc
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGN----LSSEVTSVDLHRHFHALCVGT 285 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~~~G~ 285 (417)
.++ |...++++.+...|+.. |.
T Consensus 85 ----------------------------------------------------~G~shapld~r~~~ei~~~v~s~a--~p 110 (267)
T KOG4454|consen 85 ----------------------------------------------------CGNSHAPLDERVTEEILYEVFSQA--GP 110 (267)
T ss_pred ----------------------------------------------------cCCCcchhhhhcchhhheeeeccc--CC
Confidence 333 66778899999999999 99
Q ss_pred eEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 286 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 286 i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
+..+++..+ +.++|+.+-..-..-.++..-.+....-+++.+
T Consensus 111 ~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 111 IEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred CCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 999998765 678999887777667777766666554444433
No 131
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.94 E-value=1.1e-09 Score=98.91 Aligned_cols=167 Identities=18% Similarity=0.243 Sum_probs=133.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec----CCCCEEEEEecCHHHHHHHHHHhcCC-CCCCceEEEEe
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGR-HIFGQPIKVNW 119 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~----~~~g~afV~F~~~~~A~~Al~~l~g~-~i~g~~l~v~~ 119 (417)
...++++++++.+++.+.++..++..+|.+........ .++|++++.|...+.+..|+. +.+. ...++.+..-.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCcc
Confidence 46788999999999999999999999996665555442 357999999999999999996 5553 44444333332
Q ss_pred cccC-------CCCCCCCCCceEE-ECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 014839 120 AYAS-------SQREDTSGHFNVF-VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (417)
Q Consensus 120 ~~~~-------~~~~~~~~~~~l~-v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~ 191 (417)
.+.. ..+.......+++ |.+++.++++++|+..|..+|.|..+++..++.++..+||+||.|....+...++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 2211 1122223334455 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCC
Q 014839 192 NDLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 192 ~~l~g~~~~g~~i~v~~~~~~~ 213 (417)
.. +...+.++++.+.+..+..
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hc-ccCcccCcccccccCCCCc
Confidence 87 8889999999999887653
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.88 E-value=2e-09 Score=97.28 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=134.9
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
...++|++++...+.+.+...++...|.+....+........++|++++.|...+.+..++.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45689999999999999999999999988888887777778899999999999999999999444456666666554433
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
......... ......+......+|.|+++.+++++|+.+|..+ |.|..++
T Consensus 167 ~~~~~~~n~----------------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~--~~i~~~r 216 (285)
T KOG4210|consen 167 RRGLRPKNK----------------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS--GEITSVR 216 (285)
T ss_pred cccccccch----------------------------hcccccCccccceeecccccccchHHHhhhccCc--Ccceeec
Confidence 322100000 0011112222334599999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
++.+ +|+++|.|.+..++..++.. ....+.++++.+.+..+..
T Consensus 217 ~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 217 LPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred cCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9866 78999999999999999987 8889999999999987653
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.82 E-value=1e-08 Score=96.38 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=75.9
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
-.++|+|.+|...+...||+++|++||.|...+|+.+..+--.+.|+||++.+.++|.+||.+|+...|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999988777789999999999999999999999999999999999875
Q ss_pred C
Q 014839 211 K 211 (417)
Q Consensus 211 ~ 211 (417)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.79 E-value=7.2e-09 Score=88.10 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=115.5
Q ss_pred ceEEECCCCccCCHHH-H--HHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 133 FNVFVGDLSPEVTDAT-L--FACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~-l--~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
...+++++-..+..+- | ...|+.+-.+...+++++ .-+.-++++|+.|.....-.++-..-+++.+.-+.+++.-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4455666655554443 2 556666666666667766 45677899999999888777776655666666555444322
Q ss_pred cCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEE
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 289 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v 289 (417)
+.-. .+. ..+......+||.+.|..+++++-|-..|.+| ..-...
T Consensus 176 tswe------------------------------dPs---l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf--psf~~a 220 (290)
T KOG0226|consen 176 TSWE------------------------------DPS---LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF--PSFQKA 220 (290)
T ss_pred cccC------------------------------Ccc---cccCccccceeecccccccccHHHHHHHHHhc--cchhhc
Confidence 2110 000 11122233789999999999999999999999 777777
Q ss_pred Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 290 RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 290 ~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
++++| +||+||.|.++.++.+|+..|+|..++.|+|++.-
T Consensus 221 kviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 221 KVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 77776 79999999999999999999999999999998853
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.79 E-value=3.3e-08 Score=93.00 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=71.6
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..+.|||.+|...+...||+.+|++| |.|.-.+|+.+ ++|+||++.+.++|.++|+.||..+|+|+.|.|..
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKy--GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKY--GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHh--cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 45789999999999999999999999 99999999876 78999999999999999999999999999999998
Q ss_pred cCCCC
Q 014839 330 GSKPT 334 (417)
Q Consensus 330 a~~~~ 334 (417)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87543
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=8.8e-09 Score=97.15 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=117.4
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|+|-|||.++++++|+++|+.||+|..|+.- -..+|.+||+|-|..+|+.|++.|++..+.|+.|+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 345667899999999999999999999999999986543 455899999999999999999999999999999882
Q ss_pred EEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccce
Q 014839 207 NWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 286 (417)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i 286 (417)
............. .... ..-........+...+ ...+++ .|++..+..-++..|.-+ |.+
T Consensus 145 ~~~~~~~~~~~~~--------~~~~--------~~~~~p~a~s~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~--~~~ 204 (549)
T KOG4660|consen 145 PGGARRAMGLQSG--------TSFL--------NHFGSPLANSPPGGWP-RGQLFG-MLSPTRSSILLEHISSVD--GSS 204 (549)
T ss_pred CCcccccchhccc--------chhh--------hhccchhhcCCCCCCc-CCccee-eeccchhhhhhhcchhcc--Ccc
Confidence 1111110000000 0000 0000000000111111 122333 388888886666666666 666
Q ss_pred EEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 287 EDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 287 ~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
..-....-+..-|++|.+..++..+...+ |..+.+......+..+
T Consensus 205 ~~~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 205 PGRETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 66222222446788898888887776654 7788888877777665
No 137
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=2.1e-08 Score=82.95 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=68.8
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
..++|..+|..+.+.++..+|.+|+ |.|..+++.|+ +|||||+|++++.|.-|-+.||+..|.|+.|.|.+-.
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4689999999999999999999996 88999999776 7999999999999999999999999999999999865
Q ss_pred CC
Q 014839 332 KP 333 (417)
Q Consensus 332 ~~ 333 (417)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 44
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.76 E-value=5.8e-08 Score=72.15 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=68.0
Q ss_pred ceEEECCCCccCCHHHHHHhhcCC--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVF--PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG----NRQIRC 206 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~--G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~----g~~i~v 206 (417)
++|+|+|||...+.++|.+++... |...-+.++.|..++.+.|||||.|.+.+.+.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888543 77888899999999999999999999999999999999999875 345566
Q ss_pred EEcc
Q 014839 207 NWAA 210 (417)
Q Consensus 207 ~~~~ 210 (417)
.|++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5.1e-08 Score=84.86 Aligned_cols=87 Identities=30% Similarity=0.401 Sum_probs=78.1
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
......+|+|.|||+.++++||+++|..||.+..+-+.+| ..|++.|.|-|.|...+||..|++.++|..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3444578999999999999999999999999999999988 689999999999999999999999999999999999998
Q ss_pred EccCCCCC
Q 014839 208 WAAKGATS 215 (417)
Q Consensus 208 ~~~~~~~~ 215 (417)
........
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 87655443
No 140
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.3e-08 Score=88.87 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=72.4
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccc------cEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
..||.+.|||.-|.+-+|++||.-+|+.| |.|.+|.|++|+ .||||+|.+.++..+|.-.|++..|++++|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrF--G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRF--GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhc--ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45677899999999999999999999999 999999999993 4899999999999999999999999999999
Q ss_pred EeecCC
Q 014839 327 CSWGSK 332 (417)
Q Consensus 327 v~~a~~ 332 (417)
|.|+.+
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 998754
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=1.1e-07 Score=70.70 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=66.2
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeC----CeeeEE
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILC----GKPIKC 327 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 327 (417)
++|.|+|||...|.++|.+++...+.|....+-++.| .|||||.|.+++.|.+-.+.++|+... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999998877788888888776 799999999999999999999999764 566788
Q ss_pred eecCC
Q 014839 328 SWGSK 332 (417)
Q Consensus 328 ~~a~~ 332 (417)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88863
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.62 E-value=2.3e-07 Score=65.30 Aligned_cols=72 Identities=15% Similarity=0.318 Sum_probs=48.8
Q ss_pred CeEEEcCCCccCCHHHHH----HHHhccC-CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 48 RSVYVGNIHPQVTNALLQ----EVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~----~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
..|+|.|||.+.+...|+ +++..+| .|.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999999877665 5555777 56655 357999999999999999999999999999999999865
Q ss_pred CCC
Q 014839 123 SSQ 125 (417)
Q Consensus 123 ~~~ 125 (417)
...
T Consensus 77 ~r~ 79 (90)
T PF11608_consen 77 NRE 79 (90)
T ss_dssp S--
T ss_pred ccc
Confidence 443
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=4.5e-09 Score=95.37 Aligned_cols=149 Identities=22% Similarity=0.314 Sum_probs=121.9
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEEEccC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIRCNWAAK 211 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g~~i~v~~~~~ 211 (417)
+.+|++||.+.++..||..+|...-.-.+-.++ .-.||+||.+.+...|.+|++.++|+. +.|.++.+.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999765211111222 125899999999999999999999876 8999999998876
Q ss_pred CCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEe
Q 014839 212 GATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 291 (417)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i 291 (417)
+.... +++-|+|+|+..-|+.|..++..| |.++.|..
T Consensus 76 kkqrs-----------------------------------------rk~Qirnippql~wevld~Ll~qy--g~ve~~eq 112 (584)
T KOG2193|consen 76 KKQRS-----------------------------------------RKIQIRNIPPQLQWEVLDSLLAQY--GTVENCEQ 112 (584)
T ss_pred HHHHh-----------------------------------------hhhhHhcCCHHHHHHHHHHHHhcc--CCHhHhhh
Confidence 54322 458899999999999999999999 99999876
Q ss_pred ec-ccc--EEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 292 QR-DKG--FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 292 ~~-~~g--~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.. +.- ..-|+|.+.+.+..|+..|+|.-+....++|.|-
T Consensus 113 vnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 113 VNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 43 322 3347899999999999999999999999999985
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.51 E-value=6.5e-07 Score=63.08 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=48.3
Q ss_pred ceEEeeCCCccccHHH----HHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 258 TTVYVGNLSSEVTSVD----LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~----L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
..|+|.|||.+.+... |+.++..+| |.|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG-GkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG-GKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC-CEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999887654 556666665 8898883 58999999999999999999999999999999999743
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=4e-07 Score=79.35 Aligned_cols=77 Identities=31% Similarity=0.409 Sum_probs=69.5
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
...+|+|.|||+.++++||+++|+.| |.++.+-+..+ .|+|-|.|...++|.+|++.+||..++|++|++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~--~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEF--GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHh--ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 33789999999999999999999999 89999888766 589999999999999999999999999999999876
Q ss_pred CCCC
Q 014839 331 SKPT 334 (417)
Q Consensus 331 ~~~~ 334 (417)
.++.
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6543
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.50 E-value=6.8e-07 Score=86.61 Aligned_cols=75 Identities=29% Similarity=0.605 Sum_probs=69.4
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-------CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-------KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-------~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
.+.|||+||++.++|+.|...|..||+|.+|+|+..+ .+.|+||-|-+-.||..|++.|+|..+.+.++++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 3559999999999999999999999999999998753 357999999999999999999999999999999999
Q ss_pred cc
Q 014839 120 AY 121 (417)
Q Consensus 120 ~~ 121 (417)
++
T Consensus 254 gk 255 (877)
T KOG0151|consen 254 GK 255 (877)
T ss_pred cc
Confidence 85
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.49 E-value=4e-07 Score=85.90 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=69.8
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
..+|||+|||.++++.+|+++|..||+|....|......++..+||||+|.+.++++.++. -+-..++++++.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 3559999999999999999999999999988887654345555999999999999999999 457789999999987766
Q ss_pred CCC
Q 014839 212 GAT 214 (417)
Q Consensus 212 ~~~ 214 (417)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 443
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.48 E-value=6e-07 Score=86.97 Aligned_cols=81 Identities=28% Similarity=0.519 Sum_probs=73.1
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeec---------cccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR---------DKGFGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
...+..+.|||+||++.++++.|...|..| |+|.+++|+- ++.|+||-|.+..+|.+|++.|+|..+.+
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrf--gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRF--GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhccc--CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 345666889999999999999999999999 9999999863 26899999999999999999999999999
Q ss_pred eeeEEeecCCCC
Q 014839 323 KPIKCSWGSKPT 334 (417)
Q Consensus 323 ~~l~v~~a~~~~ 334 (417)
..+++.|++.-.
T Consensus 247 ~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 247 YEMKLGWGKAVP 258 (877)
T ss_pred eeeeeccccccc
Confidence 999999997543
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.46 E-value=2.1e-07 Score=87.72 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec----CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~----~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
....+|||+|||.++++++|+++|..||+|+...|... +...||||+|.+.+++..|++ -+...+.++++.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEec
Confidence 34456999999999999999999999999999888763 234799999999999999996 5578888999999965
Q ss_pred cc
Q 014839 121 YA 122 (417)
Q Consensus 121 ~~ 122 (417)
..
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 44
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.43 E-value=2.8e-08 Score=90.33 Aligned_cols=154 Identities=26% Similarity=0.420 Sum_probs=122.5
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCC-CCCCceEEEEecccCCCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR-HIFGQPIKVNWAYASSQR 126 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~-~i~g~~l~v~~~~~~~~~ 126 (417)
.++|++||.+.++.+||..+|....--.+-.++- ..||+||.+.+..-|.+|++.++|+ .+.|+++.+.++-++..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 3689999999999999999998642111111111 3579999999999999999999995 578999999987665432
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~-~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
++.+-|+|+|+...++.|-.++..||.++.|..+ .|.+ .-..-|+|...+.++.|+..++|..+.+..++
T Consensus 80 -----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 80 -----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred -----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 3458999999999999999999999999988653 2222 22344778999999999999999999999999
Q ss_pred EEEccCC
Q 014839 206 CNWAAKG 212 (417)
Q Consensus 206 v~~~~~~ 212 (417)
+.|....
T Consensus 151 ~~YiPde 157 (584)
T KOG2193|consen 151 VGYIPDE 157 (584)
T ss_pred cccCchh
Confidence 9887544
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.43 E-value=4.5e-07 Score=79.35 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=77.3
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
...+...+||+|+.+.++.+++...|+.||.+..+.+..|+.++.++||+||+|.+.+.+..++. |++..+.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34556789999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred EccCC
Q 014839 208 WAAKG 212 (417)
Q Consensus 208 ~~~~~ 212 (417)
+..-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87543
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.30 E-value=7.4e-07 Score=80.51 Aligned_cols=191 Identities=15% Similarity=0.101 Sum_probs=123.6
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK---TGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
..|.|.||.++++.+.++.+|...|.|..+.|+.+.. -......|||.|.+...+..|.. |.++++-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4789999999999999999999999999999875322 12456789999999999999887 7777777777776544
Q ss_pred cCCCCCCC-CcCCC-CCccchhcccCccccccccCcCCCCCC------CCC---------CCCccceEEeeCCCccccHH
Q 014839 210 AKGATSGD-EKQSS-DSKSVVELTNGISVLFAEDGQEKSNED------APE---------NNPQYTTVYVGNLSSEVTSV 272 (417)
Q Consensus 210 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~~~~l~V~nLp~~~t~~ 272 (417)
........ ..... +......+..+......+......+.. .+. ...-..+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 33222111 00000 000011111111100000000000000 000 00112679999999999999
Q ss_pred HHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 273 DLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 273 ~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
++.+.|..+ |.|.+.++--. .-+|.|+|........|+.. +|+++.-....+
T Consensus 167 e~~e~f~r~--Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ 220 (479)
T KOG4676|consen 167 ESGESFERK--GEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRR 220 (479)
T ss_pred hhhhhhhhc--chhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhh
Confidence 999999999 99999887543 56788999998888888765 888877444433
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.21 E-value=2.9e-06 Score=64.72 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=45.7
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC-----eeCCeeeEEe
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR-----ILCGKPIKCS 328 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~~g~~l~v~ 328 (417)
+.|+|.+++..++.++|+++|+.| |.|.+|.+.+....|+|.|.+++.|.+|++.+.-. .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~--g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF--GEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc--CCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568999999999999999999999 99999999998889999999999999999877544 4555555443
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.20 E-value=1.1e-06 Score=79.54 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=117.1
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-------CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-------KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-------~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
..|.|.||.+.++.+.+..+|...|.|.+++++... ....|||.|.+...+.-|-. |.++.|-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 379999999999999999999999999999998743 24699999999999988884 8888888888888765
Q ss_pred ccCCCCC-----------------------------------------------------CCCCCceEEECCCCccCCHH
Q 014839 121 YASSQRE-----------------------------------------------------DTSGHFNVFVGDLSPEVTDA 147 (417)
Q Consensus 121 ~~~~~~~-----------------------------------------------------~~~~~~~l~v~nlp~~~~e~ 147 (417)
.....+. -..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4221100 00112679999999999999
Q ss_pred HHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 148 TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 148 ~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
++.++|..+|.|...++- .+...-+|.|+|........|+. .+|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999998766544 33445678899999999999998 6777664
No 155
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.15 E-value=4.1e-06 Score=73.37 Aligned_cols=74 Identities=28% Similarity=0.429 Sum_probs=67.7
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
...+||+|+.+.+|.+++..+|+.+ |.|..+.++.| +||+||+|.+.+....++. |+|..|.|+.+.|.+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~C--g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESC--GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CceEEEeccccccccchhhheeecc--CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3679999999999999999999999 99998888766 7899999999999999998 8999999999999987
Q ss_pred CCC
Q 014839 331 SKP 333 (417)
Q Consensus 331 ~~~ 333 (417)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 654
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.74 E-value=7.9e-05 Score=56.88 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=43.0
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC-----CCCCCceEEEE
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG-----RHIFGQPIKVN 118 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g-----~~i~g~~l~v~ 118 (417)
..|.|.+++..++-++|++.|+.||.|..|.+.+ ....|+|.|.++++|..|++.+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3689999999999999999999999888777744 445899999999999999987643 34555554444
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.0001 Score=48.46 Aligned_cols=52 Identities=21% Similarity=0.467 Sum_probs=44.9
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHH
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAI 312 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~ 312 (417)
+.|.|.+.+.+..+. +..+|..| |.|..+.+..++...+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~f--GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASF--GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhc--CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 468899999877755 55588899 99999999977889999999999999985
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.68 E-value=7.4e-05 Score=66.54 Aligned_cols=106 Identities=21% Similarity=0.334 Sum_probs=76.7
Q ss_pred CeEEEcCCCccCCHHHH------HHHHhccCCcceEEEEecCC-----CCEE--EEEecCHHHHHHHHHHhcCCCCCCce
Q 014839 48 RSVYVGNIHPQVTNALL------QEVFSSTGPLEGCKLIKKDK-----SSYG--FVDYFDRRSAALAIVTLNGRHIFGQP 114 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L------~~~f~~~G~v~~v~i~~~~~-----~g~a--fV~F~~~~~A~~Al~~l~g~~i~g~~ 114 (417)
.-|||-+||+.+..+++ .++|.+||.|..|.+.+..+ .+++ ||.|.+.|+|..||...+|..+.|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999877773 38999999999887766531 2344 99999999999999999999999999
Q ss_pred EEEEecccC-----CCCCCCCCCceEEECCCCc---cCCHHHHHHhh
Q 014839 115 IKVNWAYAS-----SQREDTSGHFNVFVGDLSP---EVTDATLFACF 153 (417)
Q Consensus 115 l~v~~~~~~-----~~~~~~~~~~~l~v~nlp~---~~~e~~l~~~f 153 (417)
|+..|...+ -+...-.+..+.|+..-.. ..+.+||.+.=
T Consensus 195 lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 195 LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 999987643 1122233344566544332 24566765543
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00013 Score=62.78 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCCCCCceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccE
Q 014839 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (417)
Q Consensus 97 ~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~ 176 (417)
-|..|-..|++....|+.++|.|+... .|+|.||..-++.+.+...|+.||+|+.-.++.| ..+++.+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a----------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA----------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc----------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccccccc
Confidence 356666779999999999999998752 4999999999999999999999999988777766 45788899
Q ss_pred EEEEeCCHHHHHHHHHHhCCce----eCCeEEEEEE
Q 014839 177 GFVSFRNQEDAQSAINDLNGKW----LGNRQIRCNW 208 (417)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g~~----~~g~~i~v~~ 208 (417)
++|+|...-.+.+|...+.-.- ..+++.-|..
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred chhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 9999999999999998773222 3455555543
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.65 E-value=5e-05 Score=68.59 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~--------~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
.....+|||-+||..+++++|.++|..+|.|. .|.+.+|++|++.||-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34456899999999999999999999999873 4677889999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 014839 201 NRQIRCNWAAKGAT 214 (417)
Q Consensus 201 g~~i~v~~~~~~~~ 214 (417)
|.+|+|..+.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999988876553
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00026 Score=53.14 Aligned_cols=70 Identities=24% Similarity=0.279 Sum_probs=53.1
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEE-------------eeccccEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR-------------VQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP 324 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~-------------i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 324 (417)
+.|.|-+.|+. ....+.++|++| |.|.+.. .........|+|.++.+|.+|+.. ||..|+|..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~--G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSF--GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCC--S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhc--ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 56889999998 556688999999 9998885 445578899999999999999987 999998854
Q ss_pred -eEEeecC
Q 014839 325 -IKCSWGS 331 (417)
Q Consensus 325 -l~v~~a~ 331 (417)
+-|.|++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5577764
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.62 E-value=0.00012 Score=65.29 Aligned_cols=73 Identities=27% Similarity=0.501 Sum_probs=62.4
Q ss_pred ceEEeeCCCccccHHH----H--HHhhhhcCccceEEEEeecc-------ccE--EEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 258 TTVYVGNLSSEVTSVD----L--HRHFHALCVGTIEDVRVQRD-------KGF--GFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~----L--~~~F~~~~~G~i~~v~i~~~-------~g~--afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
+-+||-+|++.+-.|+ | .++|.+| |.|..|.+-+. .+. .||+|.+.++|.++|...+|..++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQy--GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQY--GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhc--cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4589999999887666 2 5689999 99999998765 232 3999999999999999999999999
Q ss_pred eeeEEeecCC
Q 014839 323 KPIKCSWGSK 332 (417)
Q Consensus 323 ~~l~v~~a~~ 332 (417)
|.|+..|+..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999999763
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00018 Score=47.39 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=43.3
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHH
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAI 102 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al 102 (417)
++.|-|.|.|.+..+ +|..+|..||+|..+.+- ....+.+|+|.+..+|.+|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 357899999987776 555688899999987764 45669999999999999985
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.48 E-value=6.7e-05 Score=64.48 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCce
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT--------GRSR----GFGFVSFRNQEDAQSAINDLNGKW 198 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~--------~~~~----g~afV~f~~~~~A~~a~~~l~g~~ 198 (417)
....||+++||+.++..-|+++|+.||.|-.|.+-....+ |.++ .-|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999998888655433 2222 238999999999999999999999
Q ss_pred eCCeE
Q 014839 199 LGNRQ 203 (417)
Q Consensus 199 ~~g~~ 203 (417)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99865
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.38 E-value=0.00021 Score=64.67 Aligned_cols=80 Identities=28% Similarity=0.377 Sum_probs=68.4
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEE--------Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCe
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV--------RVQRD------KGFGFVRYSTHPEAALAIQMGNARI 319 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v--------~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~ 319 (417)
.....+|||.+||..+++++|.++|.++ |.|..- .|.++ ||-|.|+|.+...|+.|+..++++.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qc--g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQC--GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhc--ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4455789999999999999999999998 766543 23333 7999999999999999999999999
Q ss_pred eCCeeeEEeecCCCCC
Q 014839 320 LCGKPIKCSWGSKPTP 335 (417)
Q Consensus 320 ~~g~~l~v~~a~~~~~ 335 (417)
|+|..|+|.++.....
T Consensus 141 f~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTG 156 (351)
T ss_pred ccCCCchhhhhhhccC
Confidence 9999999999987654
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.00082 Score=50.46 Aligned_cols=74 Identities=20% Similarity=0.124 Sum_probs=53.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEE-E----------EecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCce
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCK-L----------IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~-i----------~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 114 (417)
..+.|.|-+.|.. ....|.+.|++||.|.+.. + .......+..|+|.++.+|.+||. .||..|.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4566999999988 5568889999999988764 0 112245699999999999999995 9999998864
Q ss_pred -EEEEecc
Q 014839 115 -IKVNWAY 121 (417)
Q Consensus 115 -l~v~~~~ 121 (417)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466663
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.00049 Score=59.36 Aligned_cols=95 Identities=25% Similarity=0.401 Sum_probs=77.7
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCC
Q 014839 186 DAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNL 265 (417)
Q Consensus 186 ~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL 265 (417)
-|..|...|++....|+.++|.|+.. ..|+|.||
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------------------------a~l~V~nl 39 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------------------------------------------AELYVVNL 39 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------------------------------------------ceEEEEec
Confidence 45667777999999999999999965 35999999
Q ss_pred CccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCC----eeCCeeeEEe
Q 014839 266 SSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR----ILCGKPIKCS 328 (417)
Q Consensus 266 p~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~----~~~g~~l~v~ 328 (417)
...++.|.|.+.|+.| |+|....+..| .+-++|.|...-.|.+|...+.-. ...+++.-|.
T Consensus 40 ~~~~sndll~~~f~~f--g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 40 MQGASNDLLEQAFRRF--GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred chhhhhHHHHHhhhhc--CccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 9999999999999999 99998777655 467899999999999998876333 3355555553
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=0.00027 Score=65.24 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=58.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----------C-------CCEEEEEecCHHHHHHHHHHhc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----------K-------SSYGFVDYFDRRSAALAIVTLN 106 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----------~-------~g~afV~F~~~~~A~~Al~~l~ 106 (417)
.-.++||.+.|||.+-.-+.|.++|..+|.|..|+|++.. + +-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3578999999999999999999999999999999998751 1 2489999999999999998776
Q ss_pred CCCCC
Q 014839 107 GRHIF 111 (417)
Q Consensus 107 g~~i~ 111 (417)
...-+
T Consensus 308 ~e~~w 312 (484)
T KOG1855|consen 308 PEQNW 312 (484)
T ss_pred hhhhh
Confidence 54433
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.17 E-value=0.00026 Score=60.94 Aligned_cols=68 Identities=29% Similarity=0.412 Sum_probs=58.6
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC------------C----CEEEEEecCHHHHHHHHHHhcCCCC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK------------S----SYGFVDYFDRRSAALAIVTLNGRHI 110 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~------------~----g~afV~F~~~~~A~~Al~~l~g~~i 110 (417)
.-.||+++||+..+..-|+++|+.||.|-.|.+-+... . .-++|+|.+...|..+.+.||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35699999999999999999999999999887754321 1 2478999999999999999999999
Q ss_pred CCce
Q 014839 111 FGQP 114 (417)
Q Consensus 111 ~g~~ 114 (417)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9974
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=58.09 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHHHHHHHhccCCcceEEEEecCCC-----CEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 61 NALLQEVFSSTGPLEGCKLIKKDKS-----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 61 e~~L~~~f~~~G~v~~v~i~~~~~~-----g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
|+++.+.+++||.|..|.|+...+. ---||+|+..++|.+|+-.|||.+|.|+.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4677889999999999998876542 357999999999999999999999999999887764
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.15 E-value=0.00055 Score=63.24 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=55.5
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-------------------ccEEEEEeCCHHHHHHHHHH
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------------------KGFGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-------------------~g~afV~f~~~~~A~~A~~~ 314 (417)
+-+.++|.+.|||.+-.-+-|.++|..+ |.|+.|+|.+. +-+|+|+|.+.+.|.+|.+.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~--G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTV--GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcc--cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3456899999999999999999999999 99999999754 45799999999999999998
Q ss_pred hCCC
Q 014839 315 GNAR 318 (417)
Q Consensus 315 l~g~ 318 (417)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7544
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.13 E-value=0.00023 Score=61.42 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=51.0
Q ss_pred HHHHHhhh-hcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 272 VDLHRHFH-ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 272 ~~L~~~F~-~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
++|...|+ +| |.|+.+.|..+ +|-++|.|...++|.+|++.||++.|.|++|.+.+..
T Consensus 83 Ed~f~E~~~ky--gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKY--GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHh--hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55555666 88 99999988776 7889999999999999999999999999999998864
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.07 E-value=0.0033 Score=42.40 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=44.8
Q ss_pred CeEEEcCCCccCCHHHHHHHHhcc----CCcceEEEEecCCCCEEEEEecCHHHHHHHHHHh
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~----G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l 105 (417)
.+|+|+|+. +++.+||+.+|..| + ...|.++.|.+ |=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 469999995 68888999999999 5 45688888874 899999999999999654
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.06 E-value=0.0015 Score=57.32 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=50.7
Q ss_pred HHHHHHhhhhcCccceEEEEeeccc-------cEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 271 SVDLHRHFHALCVGTIEDVRVQRDK-------GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 271 ~~~L~~~F~~~~~G~i~~v~i~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
++++++.+++| |.|..|.|.... --.||+|...++|.+|+-.|||+.|+||.++..|-
T Consensus 300 ede~keEceKy--g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKY--GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhh--cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 57889999999 999999887541 24799999999999999999999999999987764
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.04 E-value=0.00094 Score=64.22 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhc-cCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCC---CceEEEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSS-TGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF---GQPIKVN 118 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~-~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~---g~~l~v~ 118 (417)
....++.|+|.||--..|...|+.++.+ .|.|++.+| |+-+.+|||.|.+.++|..-...|||..+. ++.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 5567788999999999999999999994 557888755 667779999999999999999999998885 4667777
Q ss_pred ecc
Q 014839 119 WAY 121 (417)
Q Consensus 119 ~~~ 121 (417)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 654
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0025 Score=61.03 Aligned_cols=78 Identities=24% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCceEEECCCCccC--CH----HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 014839 130 SGHFNVFVGDLSPEV--TD----ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NR 202 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~--~e----~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~ 202 (417)
.-...|+|.|+|.-- .- .-|..+|+++|++....+..+..+| ++||.|++|.+..+|+.|++.|||+.++ +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 445689999998632 12 2356789999999999999886555 9999999999999999999999999985 45
Q ss_pred EEEEEE
Q 014839 203 QIRCNW 208 (417)
Q Consensus 203 ~i~v~~ 208 (417)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666643
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.96 E-value=0.00058 Score=59.04 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=50.7
Q ss_pred HHHHHHHh-ccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 62 ALLQEVFS-STGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 62 ~~L~~~f~-~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
+||...|+ +||+|+++++..+. -.|-+||.|..+++|.+|++.||+.-|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 89999999887654 36889999999999999999999999999999998764
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.87 E-value=0.0068 Score=48.40 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCccceEEeeCCC-----ccccH----HHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 014839 253 NNPQYTTVYVGNLS-----SEVTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK 323 (417)
Q Consensus 253 ~~~~~~~l~V~nLp-----~~~t~----~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 323 (417)
-+|+.-+|.|.=+. ..... .+|.+.|..| |.+.-+|+..+ .-.|+|.+-+.|.+|+. |+|..++|+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~--GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY--GEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC--S-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC--CceEEEEEeCC--eEEEEECccHHHHHHHc-cCCcEECCE
Confidence 34455667665544 12222 3677888889 99998888876 79999999999999986 599999999
Q ss_pred eeEEeecCCC
Q 014839 324 PIKCSWGSKP 333 (417)
Q Consensus 324 ~l~v~~a~~~ 333 (417)
.|+|+...+.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999886543
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.84 E-value=0.0011 Score=59.59 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=66.8
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G--~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
...++||+||-|.+|++||.+.+...| .+.+++++.++.+|.+||||+|...+....++-|+.|..+.|.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 345799999999999999999887766 46778888888899999999999999999999999999999998765553
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.76 E-value=0.0015 Score=62.84 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee---CCeeeE
Q 014839 250 APENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---CGKPIK 326 (417)
Q Consensus 250 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 326 (417)
.+..+...+.|+|.||-...|.-.|+.++..-| |.|.+.-|.+=|..|||.|.+.++|.....+|||... +++.|.
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 444667778999999999999999999999664 7787772222378999999999999999999999954 789999
Q ss_pred EeecC
Q 014839 327 CSWGS 331 (417)
Q Consensus 327 v~~a~ 331 (417)
+.|+.
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 99875
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.72 E-value=0.0072 Score=48.25 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=52.5
Q ss_pred CCCCceEEECCCCc------cCCH---HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014839 129 TSGHFNVFVGDLSP------EVTD---ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 129 ~~~~~~l~v~nlp~------~~~e---~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 199 (417)
.++..+|.|.-+.+ ...+ .+|.+.|..||++.-+++..+ .-+|+|.+-++|-+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 44556666655541 1222 367788999999988887733 48999999999999999 999999
Q ss_pred CCeEEEEEEccCC
Q 014839 200 GNRQIRCNWAAKG 212 (417)
Q Consensus 200 ~g~~i~v~~~~~~ 212 (417)
.|+.|+|....+.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999987664
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.0042 Score=59.43 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=56.7
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC--eeCCeeeEE
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKC 327 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v 327 (417)
|.|.++.||..+-.|+++.+|+.-.+..+.+|.+-.+. --||+|++..||..|.+.|.-. +|-|++|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 67899999999999999999987444789999987664 3699999999999999887544 577777643
No 183
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.007 Score=58.10 Aligned_cols=69 Identities=23% Similarity=0.261 Sum_probs=57.0
Q ss_pred ceEEeeCCCccc------cHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeC-Ceee
Q 014839 258 TTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC-GKPI 325 (417)
Q Consensus 258 ~~l~V~nLp~~~------t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l 325 (417)
.+|+|.|+|--- -..-|..+|+++ |+|....++.+ +|+.|++|.+..+|+.|++.|||+.|+ ++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~--gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKA--GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhh--ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 689999998632 234567789999 99999999866 799999999999999999999999875 5566
Q ss_pred EEe
Q 014839 326 KCS 328 (417)
Q Consensus 326 ~v~ 328 (417)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.46 E-value=0.014 Score=41.53 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=42.5
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g 107 (417)
...+|. .|..+...||.++|+.||.|. |.++.+. .|||...+.+.|..++..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 335555 999999999999999999987 6666665 699999999999999987763
No 185
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.23 E-value=0.19 Score=44.73 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----------CCCEEEEEecCHHHHHHH----H
Q 014839 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----------KSSYGFVDYFDRRSAALA----I 102 (417)
Q Consensus 38 ~~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-----------~~g~afV~F~~~~~A~~A----l 102 (417)
+|.+.|.-..|.|.+.|+..+++-..+...|.+||+|++|.++.+. ......+-|-+.+.+-.. +
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 5667778888999999999999999999999999999999999765 135788999999887543 3
Q ss_pred HHhc--CCCCCCceEEEEecccCCC-----------------------CCCCCCCceEEECCCCccCCHHHHHH----hh
Q 014839 103 VTLN--GRHIFGQPIKVNWAYASSQ-----------------------REDTSGHFNVFVGDLSPEVTDATLFA----CF 153 (417)
Q Consensus 103 ~~l~--g~~i~g~~l~v~~~~~~~~-----------------------~~~~~~~~~l~v~nlp~~~~e~~l~~----~f 153 (417)
..|. .+.+....|.+.+..-+-. -.....+|.|.|. +...+.++++.+ ++
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhh
Confidence 3343 2445666777766541100 0112345667663 334444444322 23
Q ss_pred cCCC----CeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCc
Q 014839 154 SVFP----TCSDARVMWDQKTG--RSRGFGFVSFRNQEDAQSAINDLNGK 197 (417)
Q Consensus 154 ~~~G----~v~~v~~~~d~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (417)
..-+ .+++|.++...... -++.||.+.|-+...|.+.++.+...
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 3334 35777777543222 35789999999999999999987643
No 186
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.12 E-value=0.0054 Score=57.67 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=67.0
Q ss_pred ccceEEeeCCCccc-cHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 256 QYTTVYVGNLSSEV-TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 256 ~~~~l~V~nLp~~~-t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
..+.|-+.-.|+.. +-++|..+|.+| |.|..|.+....-.|.|+|.+..+|-+|.. .++..|++|.|+|.|-++..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~f--G~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQF--GEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhc--CccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34567777777776 678999999999 999999998776789999999999988865 49999999999999998765
Q ss_pred CCCCC
Q 014839 335 PPGTS 339 (417)
Q Consensus 335 ~~~~~ 339 (417)
....+
T Consensus 448 ~tn~p 452 (526)
T KOG2135|consen 448 VTNIP 452 (526)
T ss_pred ccCcc
Confidence 43333
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.09 E-value=0.07 Score=40.95 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=52.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCC--CCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G-~v~~v~i~~~~~--~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
.....+.+-..|+.++-++|..+.+.+- .|..++|+++.. +-.++++|.+.++|....+..||+.|..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3345566666666777778877766654 688899999864 3368899999999999999999999864
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.00 E-value=0.0074 Score=54.41 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=60.7
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
....++||+||-..+|++||.+.+...+...+.++++..+ ||||+|...+....++.|+.|-.++|+|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3447899999999999999999988774345666666544 899999999999999999999999999976544
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.95 E-value=0.023 Score=48.05 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=49.4
Q ss_pred cHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhC--CCeeCCeeeEEeecCCC
Q 014839 270 TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPIKCSWGSKP 333 (417)
Q Consensus 270 t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~~~ 333 (417)
..+.|+++|..+ +.+..+..+++=+-..|.|.+.+.|.+|...|+ +..|.|..++|-|+...
T Consensus 8 ~~~~l~~l~~~~--~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTY--DPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhc--CCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999 999999999997789999999999999999999 99999999999998543
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.87 E-value=0.044 Score=43.22 Aligned_cols=74 Identities=22% Similarity=0.377 Sum_probs=57.6
Q ss_pred CCCccceEEeeCCCccc-cHHHHH---HhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 253 NNPQYTTVYVGNLSSEV-TSVDLH---RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~-t~~~L~---~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
..++-.+|.|+=|..++ ..+||+ ..++.| |+|.+|.+.- +-.|.|.|.|...|-+|+.+++. ...|..+.|+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~f--GpI~SVT~cG-rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF--GPIQSVTLCG-RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhc--CCcceeeecC-CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 45566789998776665 234444 456788 9999998753 46799999999999999999876 6788899998
Q ss_pred ec
Q 014839 329 WG 330 (417)
Q Consensus 329 ~a 330 (417)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 85
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.84 E-value=0.086 Score=40.45 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=50.0
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
..+.+...|.-++.++|..+.+.+. ..|..+++.+| +=.++++|.+.+.|+.-.+.+||+.|..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666667777877776663 67889999988 3468999999999999999999998754
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.75 E-value=0.057 Score=36.45 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=44.8
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcC-ccceEEEEeeccccEEEEEeCCHHHHHHHHHHh
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALC-VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG 315 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~-~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l 315 (417)
..|+|+++. +++.++|+.+|..|. ......|..+.| ..|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 569999985 588889999999882 135667777777 45788999999999999865
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.31 E-value=0.13 Score=40.57 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCCCCCeEEEcCCCccCC----HHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 43 DASTCRSVYVGNIHPQVT----NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~----e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
-+.+-.||.|+=|..++. -..|...++.||+|.+|...- +..|.|.|++..+|-+|+..+.. ...|..+...
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 345567899987766653 334556778899999987643 34799999999999999987664 6677777777
Q ss_pred ecc
Q 014839 119 WAY 121 (417)
Q Consensus 119 ~~~ 121 (417)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 753
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.26 E-value=0.021 Score=48.07 Aligned_cols=73 Identities=8% Similarity=0.101 Sum_probs=50.0
Q ss_pred cceEEeeCCCccccHHHHHHhhhh-cCccce---EEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHA-LCVGTI---EDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG-- 322 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~-~~~G~i---~~v~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 322 (417)
..+|.|++||+.+|++++.+.++. + +.- .++.-..+ -.-|+|.|.+.++...-...++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l--~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWL--PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhc--ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 368999999999999999998877 5 444 33331111 2469999999999999999999997733
Q ss_pred ---eeeEEeecC
Q 014839 323 ---KPIKCSWGS 331 (417)
Q Consensus 323 ---~~l~v~~a~ 331 (417)
.+..|.+|-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 345666664
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.03 E-value=0.04 Score=46.43 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=51.6
Q ss_pred CCceEEECCCCccCCHHHHHHhhcC-CCCe---eEEEEeecC-CCC-CcccEEEEEeCCHHHHHHHHHHhCCceeC---C
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSV-FPTC---SDARVMWDQ-KTG-RSRGFGFVSFRNQEDAQSAINDLNGKWLG---N 201 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~-~G~v---~~v~~~~d~-~~~-~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g 201 (417)
...+|.|++||+.++|+++.+.++. ++.- ..+.-.... ... ..-.-|||.|.+.++.......++|+.+. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4458999999999999999998887 5655 333311221 111 12335999999999999999999998862 2
Q ss_pred --eEEEEEEccC
Q 014839 202 --RQIRCNWAAK 211 (417)
Q Consensus 202 --~~i~v~~~~~ 211 (417)
..-.|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3455777754
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.96 E-value=0.086 Score=49.61 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCC--CCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G-~v~~v~i~~~~~--~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
+.+++.|+|-.+|..++-.||..|+..+- .|..+++++++. +-..+|+|.+.++|....+.+||+.|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34488999999999999999999998765 699999999864 3468999999999999999999999874
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.92 E-value=0.011 Score=53.39 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=62.6
Q ss_pred ceEEECCCCccCCHHHHH---HhhcCCCCeeEEEEeecCC--CCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 133 FNVFVGDLSPEVTDATLF---ACFSVFPTCSDARVMWDQK--TGR-SRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~---~~f~~~G~v~~v~~~~d~~--~~~-~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
+-+||-+|+.....+++. ++|..||.|..|.+..+.. .+. ..--++|+|..+++|..+|...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888898886555443 5889999999998887652 111 1122899999999999999999999999999888
Q ss_pred EEccCCC
Q 014839 207 NWAAKGA 213 (417)
Q Consensus 207 ~~~~~~~ 213 (417)
.+.+.+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8776654
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.62 E-value=0.18 Score=36.05 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=39.9
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (417)
.||--..|..+...||.++|+.||.|. |..+-| .-|||...+.+.+..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 455445999999999999999999985 444433 249999999999999998775
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.42 E-value=2.4 Score=38.09 Aligned_cols=178 Identities=9% Similarity=0.101 Sum_probs=100.5
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHHH----HhC
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-------KTGRSRGFGFVSFRNQEDAQSAIN----DLN 195 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~-------~~~~~~g~afV~f~~~~~A~~a~~----~l~ 195 (417)
.+.-.+|.|...|+..+++-..+...|-+||+|++|.++.+. ...+...-..+-|-+.+.+-.... .|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344456789999999999999999999999999999999764 112334568889999888765542 232
Q ss_pred C--ceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHH
Q 014839 196 G--KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273 (417)
Q Consensus 196 g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 273 (417)
. ..+....+.+.+..-+.......... ........ .. .-...-......+.|.|.-- ..+.+++
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~-~~~~~~~~-~~-----------~L~~~i~~~gATRSl~IeF~-~~~~~~d 155 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDE-EADFSDYL-VA-----------SLQYNIINRGATRSLAIEFK-DPVDKDD 155 (309)
T ss_pred HHHHhcCCcceeEEEEEEecccccccccc-ccchhhHH-hh-----------hhhheeecCCcceEEEEEec-CccchhH
Confidence 2 23556667666654221111110000 00000000 00 00000011223356777433 4443333
Q ss_pred -HHHhh---hhcC--ccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCC
Q 014839 274 -LHRHF---HALC--VGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNAR 318 (417)
Q Consensus 274 -L~~~F---~~~~--~G~i~~v~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 318 (417)
+.+.+ ..-+ .-.+++|.++.- +.||.++|-+..-|...+..|.-.
T Consensus 156 l~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 156 LIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred HHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 33322 1110 015677777642 689999999999999998877533
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.23 E-value=0.2 Score=47.31 Aligned_cols=69 Identities=25% Similarity=0.352 Sum_probs=58.8
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCC-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVF-PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
..++.|+|-.+|..++..||..|+..+ -.|.++++++|.. ..+-...|+|++.++|....+.+||..+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 337899999999999999999999877 4678999998632 33556899999999999999999999874
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.94 E-value=0.076 Score=38.72 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=45.9
Q ss_pred EEEEecCHHHHHHHHHHhc-CCCCCCceEEEEecccCC------CCCCCCCCceEEECCCCccCCHHHHHHhhc
Q 014839 88 GFVDYFDRRSAALAIVTLN-GRHIFGQPIKVNWAYASS------QREDTSGHFNVFVGDLSPEVTDATLFACFS 154 (417)
Q Consensus 88 afV~F~~~~~A~~Al~~l~-g~~i~g~~l~v~~~~~~~------~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~ 154 (417)
|+|+|.+++-|++.++.-. ...+.+..+.|.-..-.. .-......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999995321 233445555554332111 112345678999999999999999988764
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.77 E-value=0.027 Score=51.08 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=60.6
Q ss_pred ceEEeeCCCccccHHHHH---HhhhhcCccceEEEEeeccc---------cEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 258 TTVYVGNLSSEVTSVDLH---RHFHALCVGTIEDVRVQRDK---------GFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~---~~F~~~~~G~i~~v~i~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
+-+||-+|+..+-.+.+. +.|.+| |.|..|.+.++. .-++|+|...++|.+||...+|...+|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy--gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY--GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc--ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 447888999887665554 478888 999999887752 237999999999999999999999999999
Q ss_pred EEeecCCC
Q 014839 326 KCSWGSKP 333 (417)
Q Consensus 326 ~v~~a~~~ 333 (417)
+..++..+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88887654
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.71 E-value=0.097 Score=38.19 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=46.9
Q ss_pred EEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCC
Q 014839 177 GFVSFRNQEDAQSAINDLN-GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNP 255 (417)
Q Consensus 177 afV~f~~~~~A~~a~~~l~-g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
|+|+|.+++-|++.++.-. ...++++.+.|....-.......-+ -....
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q------------------------------v~~~v 50 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ------------------------------VFSGV 50 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE------------------------------EEEcc
Confidence 6799999999999998322 2235677776665432111100000 00112
Q ss_pred ccceEEeeCCCccccHHHHHHhhhh
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHA 280 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~ 280 (417)
..++|.|.|||....+|+|++.++-
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEEE
Confidence 3378999999999999999887653
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.69 E-value=0.048 Score=55.15 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=65.6
Q ss_pred eEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee--CCeeeEEeecCCCC
Q 014839 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGSKPT 334 (417)
Q Consensus 259 ~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 334 (417)
+..+.|.+-..+-.-|..+|++| |.|.+....++-..|.|+|...+.|..|++.|+|+++ -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y--g~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY--GSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh--cchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 45566777788889999999999 9999999999999999999999999999999999974 78889999998543
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.51 E-value=0.21 Score=48.27 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=52.6
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcC--CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSV--FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG--KWLGNRQIR 205 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~--~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~~~g~~i~ 205 (417)
.+.+.|.++.||....+++++.+|+. +-.+.+|.+-.+. -=||+|+++.||+.|.+.|.. ++|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34456889999999999999999975 5677778766441 268999999999999987743 335666554
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.47 E-value=0.15 Score=45.46 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=59.3
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCee-eEEeecCCCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP-IKCSWGSKPT 334 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~~~ 334 (417)
..-|.|-++|+.-.. -|..+|+.| |.|.+.....+..+..|.|.+.-+|.+|+.. ||+.|+|.. |-|+-+.++.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~c--G~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRC--GEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhh--CeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 356777788876543 477889999 9999998887778999999999999999998 999998755 5566655443
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.46 E-value=0.3 Score=33.56 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 58 QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 58 ~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
.++-++++..+..|+-.. |..+ ..|| ||.|.+.++|++|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999997332 3333 3455 89999999999999999999988877654
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=0.25 Score=44.08 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=55.5
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCce-EEEEecccC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP-IKVNWAYAS 123 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~-l~v~~~~~~ 123 (417)
.=|-|-++|+... ..|..+|++||.|++...- .+..|-.|.|.+.-+|.+||. .||+.|.|.. |-|+.+..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 3477778876654 4778899999999865443 556799999999999999995 8999998864 666665543
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.40 E-value=0.052 Score=53.49 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
..+.-+|||+|+-..+..+-++.....+|-|.+++... |+|.+|........|+..|+-..+.|..+.+......
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 34456899999999999999999999999888766544 9999999999999999888888888887777653211
Q ss_pred -----CC--------C--CCCCCCceEEECCCCccCCHHHHHHhhcCCCC
Q 014839 124 -----SQ--------R--EDTSGHFNVFVGDLSPEVTDATLFACFSVFPT 158 (417)
Q Consensus 124 -----~~--------~--~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~ 158 (417)
.. . -+....+-.+|.++|-...+......+.-.+.
T Consensus 112 ~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s 161 (668)
T KOG2253|consen 112 IENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSS 161 (668)
T ss_pred hcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccch
Confidence 00 0 01111345667777776666665555544433
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.73 E-value=0.12 Score=51.10 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=64.1
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..++..++||+|+...+..+-++.+...+ |.|.++.... |||+.|.......+|+..++-..++|..+.+.-
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~--g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKS--GFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhC--Ccchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44566789999999999999999999998 8888887655 999999999999999999999999999987765
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.48 E-value=0.43 Score=40.43 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=46.3
Q ss_pred CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEccCC
Q 014839 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN--GKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 145 ~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~i~v~~~~~~ 212 (417)
....|+++|..++.+.....++. -+-..|.|.+.++|.+|...|+ +..+.|..+++-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988888733 4458899999999999999999 99999999999998443
No 212
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.25 E-value=0.098 Score=49.53 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCccCC-HHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 45 STCRSVYVGNIHPQVT-NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~-e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.+++.|-+.-.|+..+ -.+|...|..||.|..|.+-.. .-.|.|+|.+..+|-+|.. .++..|.++.|+|.|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4556777777887764 5799999999999998877443 4589999999999988884 8999999999999998765
Q ss_pred C
Q 014839 124 S 124 (417)
Q Consensus 124 ~ 124 (417)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.14 E-value=0.11 Score=52.58 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=58.8
Q ss_pred EEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCC--CceEEEEeccc
Q 014839 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAYA 122 (417)
Q Consensus 50 v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~--g~~l~v~~~~~ 122 (417)
..+.|.+-..+-.-|.-+|..||.|.+.+.+++-+ .|.|+|.+.+.|..|++.|.|+.+. |-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 33445555667788899999999999998877654 8999999999999999999998865 77888888764
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.85 E-value=0.85 Score=31.35 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=43.6
Q ss_pred cccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 268 EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 268 ~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
.++-++++..+..| .-.+|. .|+--=||.|.+..+|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y---~~~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY---RWDRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC---CcceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56789999999999 344444 34333489999999999999999999998877754
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.65 E-value=0.83 Score=32.32 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=36.9
Q ss_pred ccccHHHHHHhhhhcC---ccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 267 SEVTSVDLHRHFHALC---VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 267 ~~~t~~~L~~~F~~~~---~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..++..+|..++...+ .-.|-.|++..+ |+||+-.. +.|.++++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567888888887662 125667777666 89998876 5888999999999999999999764
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.63 E-value=0.3 Score=40.32 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=60.0
Q ss_pred ceEEeeCCCcccc-----HHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCe-eeEEeecC
Q 014839 258 TTVYVGNLSSEVT-----SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK-PIKCSWGS 331 (417)
Q Consensus 258 ~~l~V~nLp~~~t-----~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~ 331 (417)
..+.+.+++..+- ......+|..| -+..-..+.+..+...|.|.+++.|..|...++++.|.|+ .+++-|+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~--n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQI--NEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhh--CcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 4577778877652 23455667777 5666667778888899999999999999999999999998 89988887
Q ss_pred CCCCCC
Q 014839 332 KPTPPG 337 (417)
Q Consensus 332 ~~~~~~ 337 (417)
+.....
T Consensus 89 ~~~~~~ 94 (193)
T KOG4019|consen 89 PGHPES 94 (193)
T ss_pred CCCccc
Confidence 655443
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.19 E-value=0.8 Score=32.40 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHHhccCCcc-----eEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 57 PQVTNALLQEVFSSTGPLE-----GCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 57 ~~~~e~~L~~~f~~~G~v~-----~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
..++..+|..++...+.|. .|.+ ...|+||+-... .|..+++.|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577889999888765443 4444 345899998766 799999999999999999999853
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=87.01 E-value=0.79 Score=37.55 Aligned_cols=106 Identities=8% Similarity=-0.046 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHhc-cCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCCCC---CCCc
Q 014839 58 QVTNALLQEVFSS-TGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHF 133 (417)
Q Consensus 58 ~~~e~~L~~~f~~-~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~~~---~~~~ 133 (417)
+.+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.++++ ...-.+.|..+.+..-.+....... .-..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~v 105 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPV 105 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccch
Confidence 4556666666654 233223333322 45789999999999999995 5556677887888766644332221 1233
Q ss_pred eEEECCCCcc-CCHHHHHHhhcCCCCeeEEEEe
Q 014839 134 NVFVGDLSPE-VTDATLFACFSVFPTCSDARVM 165 (417)
Q Consensus 134 ~l~v~nlp~~-~~e~~l~~~f~~~G~v~~v~~~ 165 (417)
-|.|.|||.. .+++-++.+-+.+|.+.++...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 4889999998 7888889999999999887655
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.93 E-value=2.1 Score=38.05 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=40.1
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHH
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRR 96 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~ 96 (417)
...-|+++|||.++...||+..+.+.+-+- ..+.+....|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 335599999999999999999999876332 45666778889999998754
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.61 E-value=4.2 Score=40.03 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCCCceEEECCCCcc-CCHHHHHHhhcCC----CCeeEEEEeecC----------CCCC---------------------
Q 014839 129 TSGHFNVFVGDLSPE-VTDATLFACFSVF----PTCSDARVMWDQ----------KTGR--------------------- 172 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~-~~e~~l~~~f~~~----G~v~~v~~~~d~----------~~~~--------------------- 172 (417)
...+++|-|-|+.|+ +.-.||.-+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345688999999998 7889999888766 688888875321 1111
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCC
Q 014839 173 ----------------SRGFGFVSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAKGA 213 (417)
Q Consensus 173 ----------------~~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~i~v~~~~~~~ 213 (417)
.--||.|+|.+.+.|......|+|..+. +..+.+.|.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 0137999999999999999999999985 5677777775543
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=5.8 Score=39.09 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=61.5
Q ss_pred CCccceEEeeCCCcc-ccHHHHHHhhhhcC--ccceEEEEeecc------------------------------------
Q 014839 254 NPQYTTVYVGNLSSE-VTSVDLHRHFHALC--VGTIEDVRVQRD------------------------------------ 294 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~~--~G~i~~v~i~~~------------------------------------ 294 (417)
...+++|-|-||..+ +...||.-+|+.|+ .|.|.+|.|.++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556789999999985 68899999999884 379999998643
Q ss_pred ---------------c--cEEEEEeCCHHHHHHHHHHhCCCeeCCe--eeEEee
Q 014839 295 ---------------K--GFGFVRYSTHPEAALAIQMGNARILCGK--PIKCSW 329 (417)
Q Consensus 295 ---------------~--g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~ 329 (417)
. =||.|+|.+.+.|....+.++|.+|... .|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 1699999999999999999999998654 444444
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.68 E-value=1.8 Score=35.36 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=58.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCC
Q 014839 174 RGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPEN 253 (417)
Q Consensus 174 ~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (417)
.++..+.|.+++++.++++ .....++|..+.+..-.+........ .
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~---------------------------------~ 100 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVK---------------------------------F 100 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccc---------------------------------e
Confidence 4789999999999999988 45555777777665443321111000 0
Q ss_pred CCccceEEeeCCCcc-ccHHHHHHhhhhcCccceEEEEeecc
Q 014839 254 NPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRD 294 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~~~G~i~~v~i~~~ 294 (417)
.....-|.|.|||.. .+++-|+.+.+.+ |.+.++.....
T Consensus 101 ~~~~vWVri~glP~~~~~~~~~~~i~~~i--G~~i~vD~~t~ 140 (153)
T PF14111_consen 101 EHIPVWVRIYGLPLHLWSEEILKAIGSKI--GEPIEVDENTL 140 (153)
T ss_pred eccchhhhhccCCHHHhhhHHHHHHHHhc--CCeEEEEcCCC
Confidence 001134778899997 4888899999999 99999987543
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.27 E-value=12 Score=33.38 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=40.8
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCH
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH 305 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~ 305 (417)
+....|+++||+.++.-.||+..+.+.+ ...-++.+.-..|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~-~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRE-CTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcC-CCceeEeeecCCcceeEecCCc
Confidence 3446699999999999999999999883 3456667767789999999775
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.15 E-value=12 Score=35.12 Aligned_cols=55 Identities=11% Similarity=0.031 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCC-cceEEEEecCCCCEEEEEecCHHHHHHHHH
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSSYGFVDYFDRRSAALAIV 103 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~-v~~v~i~~~~~~g~afV~F~~~~~A~~Al~ 103 (417)
-...|-|.++|.....+||...|+.|+. --.|+++.+. +||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 4567999999999999999999999973 3446666655 79999999999999994
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.44 E-value=6.3 Score=30.63 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=28.7
Q ss_pred eEEEcCCCccC---------CHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHH
Q 014839 49 SVYVGNIHPQV---------TNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSA 98 (417)
Q Consensus 49 ~v~v~nLp~~~---------~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A 98 (417)
++.|-|+|... +.++|++.|..|.++. ++.+.++ ..|+++|+|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHH
Confidence 57778886643 4578999999999876 6666655 368999999876544
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.09 E-value=3.4 Score=36.54 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=50.4
Q ss_pred ceEEeeCCCcc------------ccHHHHHHhhhhcCccceEEEEeecc----------------ccEE---------EE
Q 014839 258 TTVYVGNLSSE------------VTSVDLHRHFHALCVGTIEDVRVQRD----------------KGFG---------FV 300 (417)
Q Consensus 258 ~~l~V~nLp~~------------~t~~~L~~~F~~~~~G~i~~v~i~~~----------------~g~a---------fV 300 (417)
.+|++.+||-. -+++.|+..|+.| |.|..|.|+.- +||+ ||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf--g~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF--GEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHh--ccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 46777777632 3578899999999 99999988632 3443 46
Q ss_pred EeCCHHHHHHHHHHhCCCee----CC----eeeEEeecCCC
Q 014839 301 RYSTHPEAALAIQMGNARIL----CG----KPIKCSWGSKP 333 (417)
Q Consensus 301 ~f~~~~~A~~A~~~l~g~~~----~g----~~l~v~~a~~~ 333 (417)
+|.....-..||..|.|..+ .| -.++|.|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 66666666777888877743 33 34677776543
No 227
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.80 E-value=5.3 Score=39.80 Aligned_cols=13 Identities=46% Similarity=0.440 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 014839 5 RLKQQTMMQQQSL 17 (417)
Q Consensus 5 ~~~~q~~~~qq~~ 17 (417)
|++||+|+|||++
T Consensus 71 ~~~~~~~~~~~~~ 83 (1179)
T KOG3648|consen 71 QLQQQQQQQQQQQ 83 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 228
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.51 E-value=18 Score=32.12 Aligned_cols=139 Identities=20% Similarity=0.311 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHhccC---CcceEEEEecCCCCEEEEEecCH----HHHHHHHHHhcCCCCC--C--ceEEEEecc-----
Q 014839 58 QVTNALLQEVFSSTG---PLEGCKLIKKDKSSYGFVDYFDR----RSAALAIVTLNGRHIF--G--QPIKVNWAY----- 121 (417)
Q Consensus 58 ~~~e~~L~~~f~~~G---~v~~v~i~~~~~~g~afV~F~~~----~~A~~Al~~l~g~~i~--g--~~l~v~~~~----- 121 (417)
+++.=||.+-+...- ...+|+|. ....-||.|.-+ .-..+.+.+|+|..|. | ..++|+-+.
T Consensus 48 sisnwdlmerlk~aid~~q~dsckir---esnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidf 124 (445)
T KOG2891|consen 48 SISNWDLMERLKGAIDNHQFDSCKIR---ESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDF 124 (445)
T ss_pred ccchHHHHHHHHhhcccccccceeec---ccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCC
Confidence 455666766665421 23445442 234668877644 3345566778887654 2 233333221
Q ss_pred cCC--------------CCCCCCCCceEEECCCCcc------------CCHHHHHHhhcCCCCeeEEEEee-----cCCC
Q 014839 122 ASS--------------QREDTSGHFNVFVGDLSPE------------VTDATLFACFSVFPTCSDARVMW-----DQKT 170 (417)
Q Consensus 122 ~~~--------------~~~~~~~~~~l~v~nlp~~------------~~e~~l~~~f~~~G~v~~v~~~~-----d~~~ 170 (417)
+.. .-.+....-+|++.+||-. -+++-|+..|..||.|..|.|.. ..-+
T Consensus 125 psrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn 204 (445)
T KOG2891|consen 125 PSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMN 204 (445)
T ss_pred CcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhc
Confidence 111 1122333457888888743 34678999999999999887742 2233
Q ss_pred CCc-----ccEE---------EEEeCCHHHHHHHHHHhCCcee
Q 014839 171 GRS-----RGFG---------FVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 171 ~~~-----~g~a---------fV~f~~~~~A~~a~~~l~g~~~ 199 (417)
|+. .||+ ||.|..-..-..|+..|.|..+
T Consensus 205 ~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 205 GKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred CccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 443 3333 3444444444556666666543
No 229
>PF14893 PNMA: PNMA
Probab=61.66 E-value=5.6 Score=37.13 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhc----cCC--cceEEEEecCCCCEEEEEecCH
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSS----TGP--LEGCKLIKKDKSSYGFVDYFDR 95 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~----~G~--v~~v~i~~~~~~g~afV~F~~~ 95 (417)
...+.|.|.+||.++++++|.+.+.. .|. |..-.+.++.+...|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 44678999999999999999987764 442 2222122333456889998765
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.85 E-value=14 Score=28.66 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=23.6
Q ss_pred eEEeeCCCccc---------cHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHH
Q 014839 259 TVYVGNLSSEV---------TSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHP 306 (417)
Q Consensus 259 ~l~V~nLp~~~---------t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~ 306 (417)
.+.|.|++... +.++|++.|+.| ..++-..+... +|+++|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f--~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF--NPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc--CCceeEECcCCCCCcEEEEEEECCCh
Confidence 46677775543 568899999999 44432222222 689999998753
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=60.82 E-value=29 Score=25.18 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=43.2
Q ss_pred EEEcCCCccCCHHHHHHHHhc-cC-CcceEEEEecCC-CCEEEEEecCHHHHHHHHHHh
Q 014839 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTL 105 (417)
Q Consensus 50 v~v~nLp~~~~e~~L~~~f~~-~G-~v~~v~i~~~~~-~g~afV~F~~~~~A~~Al~~l 105 (417)
-|.--.+...+..+|++.++. || .|.+|.....+. ..-|||.+...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 455567889999999999997 56 677777766543 357999999999998876543
No 232
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=54.38 E-value=14 Score=19.95 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=6.2
Q ss_pred ChhHHHHHHHHH
Q 014839 1 MQQHRLKQQTMM 12 (417)
Q Consensus 1 ~~q~~~~~q~~~ 12 (417)
|||+|-...+-.
T Consensus 6 MqqRQwsEeqAk 17 (27)
T PF04624_consen 6 MQQRQWSEEQAK 17 (27)
T ss_pred HHHHHhhHHHHH
Confidence 567665533333
No 233
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=52.94 E-value=13 Score=40.21 Aligned_cols=13 Identities=38% Similarity=0.235 Sum_probs=4.9
Q ss_pred HHHHHHHHhhhcC
Q 014839 9 QTMMQQQSLYQYH 21 (417)
Q Consensus 9 q~~~~qq~~~~~~ 21 (417)
|+|.+||-.++|+
T Consensus 1875 qqq~~qq~~~~~~ 1887 (2131)
T KOG4369|consen 1875 QQQRIQQFQQQYQ 1887 (2131)
T ss_pred HHhHHHHHHHHHh
Confidence 3333333333343
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.40 E-value=52 Score=23.43 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=42.1
Q ss_pred EEEcCCCccCCHHHHHHHHhc-cC-CcceEEEEecCC-CCEEEEEecCHHHHHHHHHH
Q 014839 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVT 104 (417)
Q Consensus 50 v~v~nLp~~~~e~~L~~~f~~-~G-~v~~v~i~~~~~-~g~afV~F~~~~~A~~Al~~ 104 (417)
-|+-..+.+.+..+|++.++. || .|.+|.....+. -.-|||.+...+.|.+.-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 566678889999999999986 55 677776665443 35799999999998887643
No 235
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.78 E-value=36 Score=23.53 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 147 ATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 147 ~~l~~~f~~~G-~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
++|.+.|...| +|..+.-+..+.++.....-||+.....+..+++ +=..+.+..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46777777776 5777777777667777888899988776644443 335578889999877654
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.35 E-value=2.7 Score=41.00 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=53.1
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 202 (417)
.++++++|+++.++-.+|..+++.+--+..+-+..+..-.+...+++|.|+..-....|+.+|+++.+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 35699999999999999999999886555554443323334566789999988777888877887766443
No 237
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=47.50 E-value=22 Score=33.40 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=47.5
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCee
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARIL 320 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 320 (417)
+.+.|.+||+..++++|.+-...|. -.+....+... .+.++|.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6799999999999999998887762 23444444322 46799999999997777778888865
No 238
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=46.52 E-value=70 Score=30.37 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=58.9
Q ss_pred CCCCCceEEECCCCcc-CCHHHHHHhhcCC----CCeeEEEEeecC----------------------------------
Q 014839 128 DTSGHFNVFVGDLSPE-VTDATLFACFSVF----PTCSDARVMWDQ---------------------------------- 168 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~----G~v~~v~~~~d~---------------------------------- 168 (417)
....+.+|-|-|+.|+ +...+|.-.|+.| |.+..|.|....
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3556678999999987 7888998888765 667767653210
Q ss_pred ------CCC------Ccc-------------------cEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEccC
Q 014839 169 ------KTG------RSR-------------------GFGFVSFRNQEDAQSAINDLNGKWLGN--RQIRCNWAAK 211 (417)
Q Consensus 169 ------~~~------~~~-------------------g~afV~f~~~~~A~~a~~~l~g~~~~g--~~i~v~~~~~ 211 (417)
..| .-+ -||.|++.+.+.+.....+++|..+.. ..+.+.|...
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 001 011 278999999999999999999998754 5566666543
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.31 E-value=48 Score=31.38 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHH
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~ 314 (417)
..|-|.++|...-.+||...|+.|+ +.=-+|.++.| -.+|-.|.+...|..|+-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq-~kgfdIkWvDd-thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQ-NKGFDIKWVDD-THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhh-cCCceeEEeec-ceeEEeecchHHHHHHhhc
Confidence 6789999999999999999999994 34445555554 5799999999999999865
No 240
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.90 E-value=22 Score=33.60 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=6.0
Q ss_pred CCCCcCCCCCCCC
Q 014839 30 IEPILSGNLPPRF 42 (417)
Q Consensus 30 ~~~~~s~~~~~~~ 42 (417)
+..+.+++.+|..
T Consensus 255 ~~r~~as~~~P~~ 267 (505)
T COG5624 255 MERYEASGMPPPA 267 (505)
T ss_pred hhhhhccCCCCCC
Confidence 4444444444443
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.78 E-value=42 Score=31.30 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=38.6
Q ss_pred EEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhc
Q 014839 88 GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFS 154 (417)
Q Consensus 88 afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~ 154 (417)
|||.|++..+|..|++.+....- +.++++.+.+.. .|.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc---------cccccccCCChHHHHHHHHHH
Confidence 79999999999999986554443 444666554332 366678877777777766554
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.77 E-value=45 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.7
Q ss_pred HHHHHhhcCCCCeeEEEEe
Q 014839 147 ATLFACFSVFPTCSDARVM 165 (417)
Q Consensus 147 ~~l~~~f~~~G~v~~v~~~ 165 (417)
.+|+++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766553
No 243
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=44.61 E-value=73 Score=30.23 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=56.1
Q ss_pred CCCCCccceEEeeCCCcc-ccHHHHHHhhhhcC--ccceEEEEeecc---------------------------------
Q 014839 251 PENNPQYTTVYVGNLSSE-VTSVDLHRHFHALC--VGTIEDVRVQRD--------------------------------- 294 (417)
Q Consensus 251 ~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~~--~G~i~~v~i~~~--------------------------------- 294 (417)
++.+.+..+|-|-||..+ +...+|...|+.|+ .|.|..|.|.++
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 444666788999999984 67889999998874 378888887522
Q ss_pred -------------------cc-------------------EEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 295 -------------------KG-------------------FGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 295 -------------------~g-------------------~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
+| ||.|++.+.+.+......++|.++..
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 12 58899999999999999999987654
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.52 E-value=24 Score=33.13 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCC-cceEEEEe-cC-----CCCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIK-KD-----KSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~-v~~v~i~~-~~-----~~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
...|.|++||+..++.+|.+-...+-+ |.-..+.. +. ..+.|||.|...++.....+..+|..|..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 457999999999999999887776542 22222221 11 13689999999999888777777766543
No 245
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=43.02 E-value=12 Score=32.26 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.8
Q ss_pred hhHHHH
Q 014839 2 QQHRLK 7 (417)
Q Consensus 2 ~q~~~~ 7 (417)
||||+|
T Consensus 8 QqHQqQ 13 (230)
T PF06752_consen 8 QQHQQQ 13 (230)
T ss_pred HHHHHH
Confidence 445444
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.45 E-value=72 Score=23.15 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=42.2
Q ss_pred EEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHh
Q 014839 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMG 315 (417)
Q Consensus 260 l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l 315 (417)
-|+--.+...+..+|++.++....-.|.+|+...- ..-|||++...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 55556788999999999999853247888876543 346999999988888765543
No 247
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.53 E-value=43 Score=23.20 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=43.3
Q ss_pred HHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 147 ATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 147 ~~l~~~f~~~G-~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
.+|.+-|...| ++..+.-+..+.++.....-+|+.....+.... ++=+.++|+++.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---EeehhhCCeeEEEecCccc
Confidence 46777888777 567787777766667777788887766443332 3445578889999876543
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.34 E-value=82 Score=22.42 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=41.4
Q ss_pred EEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHH
Q 014839 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 260 l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~ 314 (417)
-|+-.++...+..+|+..++....-.|.+|+...- ..-|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 56667899999999999998852246777766543 34699999988888776544
No 249
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=40.40 E-value=1.1e+02 Score=20.18 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.7
Q ss_pred eEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCH----HHHHHHHHH
Q 014839 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH----PEAALAIQM 314 (417)
Q Consensus 259 ~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~----~~A~~A~~~ 314 (417)
++.|.||.=.--...+.+.+... -.|.++.+....+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~--~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKL--PGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcC--CCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 46778888777888999999998 7899999999899999999754 455556655
No 250
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=38.97 E-value=1.1e+02 Score=20.06 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=40.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCH----HHHHHHHH
Q 014839 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDR----RSAALAIV 103 (417)
Q Consensus 49 ~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~----~~A~~Al~ 103 (417)
|+.|.||.-.--...|.+.+...-.|.++.+ +...+.+-|.|... ++..++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~v--d~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKV--DLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEE--ETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEE--ECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 5788888888888999999999888888877 55557888888755 44455554
No 251
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.62 E-value=1.5e+02 Score=21.78 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=35.0
Q ss_pred HHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhC
Q 014839 271 SVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGN 316 (417)
Q Consensus 271 ~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~ 316 (417)
.+.++++++.+| |+++++.+... .....+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 567888999986 89999988765 3567889999988887765443
No 252
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=37.61 E-value=1.1e+02 Score=19.57 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=30.0
Q ss_pred HHHHHHHhccC-CcceEEEEecC-CCCEEEEEecCHHHHHHHH
Q 014839 62 ALLQEVFSSTG-PLEGCKLIKKD-KSSYGFVDYFDRRSAALAI 102 (417)
Q Consensus 62 ~~L~~~f~~~G-~v~~v~i~~~~-~~g~afV~F~~~~~A~~Al 102 (417)
.++.+.+.+.| .|..+.+.... ......+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 46667777777 78777776654 4567778888988888775
No 253
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=36.62 E-value=52 Score=25.18 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=57.9
Q ss_pred CCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCC--CCCCceEEEEecccCCC-C-CCCC
Q 014839 55 IHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQPIKVNWAYASSQ-R-EDTS 130 (417)
Q Consensus 55 Lp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~~~~~~~~-~-~~~~ 130 (417)
||+-+ +.|.++|+.=|.|.+|..+..-... .|+-.++|. .+.|+ |++.-...... + ....
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypdn-------------dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPDN-------------DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCCc-------------hhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 55544 3688999999999988655432211 122223332 22333 44443221111 0 1111
Q ss_pred CCceEEECCCCccCCHHHHHHhhcC---CCCeeEEEEeecCCCCCcccEEEEEeCCH
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSV---FPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~---~G~v~~v~~~~d~~~~~~~g~afV~f~~~ 184 (417)
.++.+ .--|+.++-.+++++|+. |--|..-.+.+|-...-+-..||..|...
T Consensus 75 sgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 22222 123678999999999975 33344444554422223455788888765
No 254
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.32 E-value=71 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=24.5
Q ss_pred ceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCC
Q 014839 285 TIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNAR 318 (417)
Q Consensus 285 ~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~ 318 (417)
.|.++-...+ +||-||+=.+..+...|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5667666665 999999999999999999876544
No 255
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.00 E-value=9.3 Score=37.52 Aligned_cols=68 Identities=9% Similarity=0.045 Sum_probs=50.3
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
..++|+++|++++++-.+|..+++.+ .-+..+-+... ..++.|+|.---.-..|+..||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i--~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGI--PGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccC--chheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 34789999999999999999999988 44444444322 4567888887777777777777776655444
No 256
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.96 E-value=21 Score=33.74 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=50.8
Q ss_pred CceEEECCCCccCCHH--------HHHHhhcC--CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014839 132 HFNVFVGDLSPEVTDA--------TLFACFSV--FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~--------~l~~~f~~--~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (417)
.+.+|+.+.+.....+ ++...|.. .+++..++..+|.....++|-.|++|+..+.+++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4568888887765554 89999998 6888888888887778889999999999999999874
No 257
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=33.55 E-value=1.5e+02 Score=21.69 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHHhccC-CcceEEEEecCCCCEEEEEecCHHHHHHHHHHh
Q 014839 61 NALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105 (417)
Q Consensus 61 e~~L~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l 105 (417)
.+.++++++..| .+.++.+...+---...+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456778888887 788888887776678899999999998876443
No 258
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=33.30 E-value=1.5e+02 Score=19.83 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=29.8
Q ss_pred HHHHHHHHhccC-CcceEEEEecCCCCEEEEEecCHHHHHHHHH
Q 014839 61 NALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIV 103 (417)
Q Consensus 61 e~~L~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~ 103 (417)
-.+|.+.|.+.| .|.++.......++.--+.+.+.+.|.++++
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 367888888877 7887776655445555566777767777774
No 259
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.19 E-value=1.7e+02 Score=20.49 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=32.9
Q ss_pred HHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHh
Q 014839 271 SVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMG 315 (417)
Q Consensus 271 ~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l 315 (417)
-+++++.++.+ | +....+.-. .++.|+-+.+.+.+.++.+.+
T Consensus 36 i~~~~~~~~~~--G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 36 IDELKEAAEEN--G-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHHT--T-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--C-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35677778888 7 667777777 778888888999988888776
No 260
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=32.19 E-value=1.8e+02 Score=20.39 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc
Q 014839 62 ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (417)
Q Consensus 62 ~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~ 106 (417)
.+|.+.+..+| +...++.-....++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677778888 444555333236788888889999999887664
No 261
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=31.91 E-value=15 Score=33.63 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCeeCCeeeEE
Q 014839 317 ARILCGKPIKC 327 (417)
Q Consensus 317 g~~~~g~~l~v 327 (417)
++.+.+-+|.+
T Consensus 335 sRDyYnF~laL 345 (423)
T PF02166_consen 335 SRDYYNFPLAL 345 (423)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444444433
No 262
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.69 E-value=1.2e+02 Score=25.49 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=51.8
Q ss_pred eEEECCCCccCC-----HHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 014839 134 NVFVGDLSPEVT-----DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR-QIRCN 207 (417)
Q Consensus 134 ~l~v~nlp~~~~-----e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~i~v~ 207 (417)
++.+.+|+..+- .....++|..|-+..-.+++ ++.+..-|.|.+.+.|..|.-.+++..+.|. .++.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 456666665532 23445667766665555555 3456677899999999999998999999887 77777
Q ss_pred EccCCCC
Q 014839 208 WAAKGAT 214 (417)
Q Consensus 208 ~~~~~~~ 214 (417)
++.+...
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 7765443
No 263
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.80 E-value=60 Score=30.27 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 298 GFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 298 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
|||+|.+..+|..|.+.+.... ++.+++..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999655443 345566655
No 264
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=29.52 E-value=73 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCHHHHHHHHhccCCcceEEEEecC--CCCEEEE
Q 014839 59 VTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFV 90 (417)
Q Consensus 59 ~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV 90 (417)
.-+.+|.+.|-+-..|.++.+..++ .+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 3466788888887889999888765 3677776
No 265
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.26 E-value=98 Score=22.31 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=23.2
Q ss_pred CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc
Q 014839 73 PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (417)
Q Consensus 73 ~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~ 106 (417)
.|.++ +.++.-+||-|||=.+..+...|++.+.
T Consensus 33 ~I~Si-~~~~~lkGyIyVEA~~~~~V~~ai~gi~ 65 (84)
T PF03439_consen 33 NIYSI-FAPDSLKGYIYVEAERESDVKEAIRGIR 65 (84)
T ss_dssp ---EE-EE-TTSTSEEEEEESSHHHHHHHHTT-T
T ss_pred ceEEE-EEeCCCceEEEEEeCCHHHHHHHHhccc
Confidence 45555 4455678999999999999999996554
No 266
>PF14893 PNMA: PNMA
Probab=27.51 E-value=48 Score=31.05 Aligned_cols=55 Identities=9% Similarity=0.147 Sum_probs=34.8
Q ss_pred CCCceEEECCCCccCCHHHHHHhhc----CCCCeeEEEEeecCCCCCcccEEEEEeCCHHH
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFS----VFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~----~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~ 186 (417)
+..+.|.|.+||.++++++|.+.+. ..|...-.--++.+.. ...-++|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccc
Confidence 4456799999999999999988764 4454432222222222 23458888875543
No 267
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.06 E-value=76 Score=26.55 Aligned_cols=54 Identities=19% Similarity=0.037 Sum_probs=36.0
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----CCCEEEEEecCHHHHHHHHHH
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVT 104 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-----~~g~afV~F~~~~~A~~Al~~ 104 (417)
.+++|.. |.+..-++|.++-+ |.+..|...+.. .+|-.||+|.+.+.|..+++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4667776 33333444545444 577777665533 257889999999999998863
No 268
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=26.93 E-value=1.5e+02 Score=22.90 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred cCCHHHHHHhhcCC-C----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 014839 143 EVTDATLFACFSVF-P----TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQS 189 (417)
Q Consensus 143 ~~~e~~l~~~f~~~-G----~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~ 189 (417)
.++.+||++-+... - .|.-..+......|++.|||.| |.+.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46777887766532 1 1222223333456789999987 777776554
No 269
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=25.33 E-value=3.4e+02 Score=21.42 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=47.1
Q ss_pred CCeEEEcCCCcc---CCHHHHHHHHhccC-CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 47 CRSVYVGNIHPQ---VTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 47 ~~~v~v~nLp~~---~~e~~L~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
...|.|+..... .+-..+.+.++.-| .+.++.. ..+...|.|.+.++-.+|.+-|....-.+..|.+...
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~----~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP----ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe----eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 446777776444 56678888998877 4555543 2347899999999998888877755544444444443
No 270
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.29 E-value=1.9e+02 Score=19.91 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCH----HHHHHHHHH
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH----PEAALAIQM 314 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~----~~A~~A~~~ 314 (417)
..+.|.++.=.--...+...++.. ..+..+.+..+++.++|+|.+. ++-..|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v--~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEV--DGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcC--CCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH
Confidence 457777777666778888999988 6799999999999999999883 344444444
No 271
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=24.56 E-value=58 Score=35.57 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=6.0
Q ss_pred HHHHHHhhhcCCcc
Q 014839 11 MMQQQSLYQYHPSL 24 (417)
Q Consensus 11 ~~~qq~~~~~~~~~ 24 (417)
|+|||-++|+++.+
T Consensus 1873 qqqqq~~qq~~~~~ 1886 (2131)
T KOG4369|consen 1873 QQQQQRIQQFQQQY 1886 (2131)
T ss_pred HHHHhHHHHHHHHH
Confidence 33344444454444
No 272
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.36 E-value=97 Score=21.53 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=23.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 296 GFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 296 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
.+.+|.|.+..+|.+|-+.|....+..+-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 368999999999999998887766654443
No 273
>PRK11901 hypothetical protein; Reviewed
Probab=24.22 E-value=1.4e+02 Score=27.71 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCHHHHHHHHhccCCcceEEEEecCC---CCEEEE--EecCHHHHHHHHHHhcC
Q 014839 59 VTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFV--DYFDRRSAALAIVTLNG 107 (417)
Q Consensus 59 ~~e~~L~~~f~~~G~v~~v~i~~~~~---~g~afV--~F~~~~~A~~Al~~l~g 107 (417)
-.++.|..|..+++ +..+++++... ..|.+| .|.+.++|..|+..|-.
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 45888999988875 45566665433 235433 79999999999988753
No 274
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.23 E-value=2e+02 Score=23.36 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=39.5
Q ss_pred eEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-cc--EEEEEeCCHHHHHHHHHH
Q 014839 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KG--FGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 259 ~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g--~afV~f~~~~~A~~A~~~ 314 (417)
.-++--++...+..+|++.++....-.|..|....- .| -|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 356667888999999999999852246777765443 33 599999887776554433
No 275
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.67 E-value=70 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=28.5
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEe
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 291 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i 291 (417)
...+||+-|+|..+|++-|+.+.+.. |.+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsql--g~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQL--GHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHh--hhhhheec
Confidence 34689999999999999999999999 76555544
No 276
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=22.54 E-value=17 Score=33.88 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCccc
Q 014839 1 MQQHRLKQQTMMQQQSLYQYHPSLL 25 (417)
Q Consensus 1 ~~q~~~~~q~~~~qq~~~~~~~~~~ 25 (417)
|.|+++|||.|-|||+-+...++..
T Consensus 306 ipq~~qqqqgqgqqqq~qataqea~ 330 (503)
T PF03249_consen 306 IPQQQQQQQGQGQQQQAQATAQEAA 330 (503)
T ss_pred cchHHHhhhccchhHHHHHHHHHHH
Confidence 4466666666655555555444443
No 277
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.86 E-value=99 Score=27.14 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC 77 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v 77 (417)
....+.+++|+-|+|...+++-|.++.+..|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 344556789999999999999999999999865544
No 278
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.79 E-value=4.3e+02 Score=20.88 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=47.1
Q ss_pred ceEEeeCCCcc---ccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 258 TTVYVGNLSSE---VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 258 ~~l~V~nLp~~---~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..|.|+..... .+-+.+.+.++.-+ -.++++.. +.+...|.|.+.++-.+|.+.|....=++-.|.+..+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~--~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITP--ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEe--eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 34666665333 56678888888872 24555444 4458999999999988888887655545556666554
No 279
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.17 E-value=4.3e+02 Score=26.84 Aligned_cols=82 Identities=10% Similarity=0.196 Sum_probs=54.2
Q ss_pred CCEEEEEecCHHHHHHHHHHhcCCCCCCceEE---EEecc-----------cCCC----CCCCCCCceEEECCCCccCCH
Q 014839 85 SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK---VNWAY-----------ASSQ----REDTSGHFNVFVGDLSPEVTD 146 (417)
Q Consensus 85 ~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~---v~~~~-----------~~~~----~~~~~~~~~l~v~nlp~~~~e 146 (417)
.--||+++.++..-+-..+.|+...+.+-.|. -+|+. ..+. ..+.-....||+.+|+.++.+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 34799999999988888888888776653332 11221 1111 123344567999999999988
Q ss_pred HHHHHhhcCCCCeeEEEEee
Q 014839 147 ATLFACFSVFPTCSDARVMW 166 (417)
Q Consensus 147 ~~l~~~f~~~G~v~~v~~~~ 166 (417)
+-=.++....--++++.|++
T Consensus 316 dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 316 DVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHHhCcccccceeec
Confidence 76666766665566776663
No 280
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.12 E-value=84 Score=18.66 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHHhccC
Q 014839 57 PQVTNALLQEVFSSTG 72 (417)
Q Consensus 57 ~~~~e~~L~~~f~~~G 72 (417)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998764
Done!