Query 014839
Match_columns 417
No_of_seqs 289 out of 2663
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 18:44:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.1E-47 1E-51 350.2 30.0 238 46-333 21-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2E-46 6.8E-51 346.2 26.7 247 40-333 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6.2E-35 2.1E-39 256.1 19.1 166 129-333 12-181 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 5.7E-34 1.9E-38 240.2 20.1 162 48-210 1-165 (166)
5 4f02_A Polyadenylate-binding p 100.0 2.9E-34 9.8E-39 251.9 16.6 166 44-212 12-181 (213)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-33 1.5E-37 235.3 20.4 159 131-330 2-168 (168)
7 1b7f_A Protein (SXL-lethal pro 100.0 3.5E-33 1.2E-37 235.9 19.6 161 46-209 2-168 (168)
8 3md3_A Nuclear and cytoplasmic 100.0 6.9E-33 2.4E-37 233.5 20.3 160 133-332 1-166 (166)
9 2qfj_A FBP-interacting repress 100.0 4.1E-33 1.4E-37 245.5 19.6 169 45-213 26-206 (216)
10 2qfj_A FBP-interacting repress 100.0 1E-33 3.4E-38 249.4 15.2 175 131-335 27-207 (216)
11 1l3k_A Heterogeneous nuclear r 100.0 4.8E-33 1.6E-37 241.2 19.1 172 43-216 9-187 (196)
12 1fxl_A Paraneoplastic encephal 100.0 1.1E-32 3.7E-37 232.6 20.6 158 132-330 2-167 (167)
13 1fxl_A Paraneoplastic encephal 100.0 7.5E-33 2.6E-37 233.5 18.8 161 46-209 1-167 (167)
14 1l3k_A Heterogeneous nuclear r 100.0 1E-32 3.6E-37 239.1 20.1 173 127-336 8-186 (196)
15 3nmr_A Cugbp ELAV-like family 100.0 3.1E-32 1.1E-36 231.6 18.8 163 45-210 1-175 (175)
16 2g4b_A Splicing factor U2AF 65 100.0 2.6E-32 9.1E-37 231.4 18.2 160 45-210 2-172 (172)
17 3nmr_A Cugbp ELAV-like family 100.0 5.5E-32 1.9E-36 230.1 19.2 161 131-331 2-175 (175)
18 2yh0_A Splicing factor U2AF 65 100.0 5.6E-32 1.9E-36 234.9 18.6 166 45-213 2-195 (198)
19 3pgw_A U1-A; protein-RNA compl 100.0 3.5E-31 1.2E-35 242.8 24.7 200 128-332 5-282 (282)
20 2adc_A Polypyrimidine tract-bi 100.0 1.4E-31 4.9E-36 237.4 21.1 196 127-333 29-228 (229)
21 2cjk_A Nuclear polyadenylated 100.0 9.5E-33 3.3E-37 233.0 12.6 159 131-333 2-166 (167)
22 3tyt_A Heterogeneous nuclear r 100.0 7.2E-32 2.5E-36 234.0 16.9 162 45-209 2-204 (205)
23 1qm9_A Polypyrimidine tract-bi 100.0 1.9E-31 6.5E-36 231.5 18.9 192 131-333 2-197 (198)
24 2cjk_A Nuclear polyadenylated 100.0 1.3E-32 4.4E-37 232.2 10.6 161 46-212 2-166 (167)
25 3tyt_A Heterogeneous nuclear r 100.0 4.1E-31 1.4E-35 229.3 18.4 188 130-330 2-204 (205)
26 2adc_A Polypyrimidine tract-bi 100.0 8E-31 2.8E-35 232.6 20.2 164 43-212 30-228 (229)
27 1fje_B Nucleolin RBD12, protei 100.0 1.2E-31 4E-36 228.1 13.3 164 128-333 9-174 (175)
28 3smz_A Protein raver-1, ribonu 100.0 1.6E-30 5.5E-35 238.7 20.9 168 46-214 94-266 (284)
29 1fje_B Nucleolin RBD12, protei 100.0 9E-31 3.1E-35 222.6 17.8 164 42-212 8-174 (175)
30 2yh0_A Splicing factor U2AF 65 100.0 3.3E-30 1.1E-34 223.7 20.8 177 131-335 3-196 (198)
31 3pgw_A U1-A; protein-RNA compl 100.0 3.2E-30 1.1E-34 236.4 21.6 163 43-210 5-281 (282)
32 2g4b_A Splicing factor U2AF 65 100.0 2.2E-30 7.6E-35 219.5 18.1 153 131-331 3-172 (172)
33 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-30 4.1E-35 226.5 16.5 161 46-212 2-197 (198)
34 3sde_A Paraspeckle component 1 100.0 3.8E-30 1.3E-34 232.8 20.0 160 41-212 16-179 (261)
35 2ghp_A U4/U6 snRNA-associated 100.0 2.8E-30 9.4E-35 238.1 17.9 167 45-212 115-291 (292)
36 3sde_A Paraspeckle component 1 100.0 1E-28 3.4E-33 223.5 19.7 154 128-334 18-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 6.4E-23 2.2E-27 170.8 14.0 139 76-214 2-152 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 3.7E-22 1.3E-26 166.2 15.2 146 161-336 2-153 (158)
39 2i2y_A Fusion protein consists 99.9 1.2E-22 4.2E-27 167.4 11.5 137 171-333 10-148 (150)
40 4f25_A Polyadenylate-binding p 99.9 4.8E-22 1.6E-26 155.9 10.5 110 131-273 4-113 (115)
41 2i2y_A Fusion protein consists 99.9 9.9E-22 3.4E-26 162.0 11.3 123 84-212 12-148 (150)
42 4f25_A Polyadenylate-binding p 99.9 1.2E-21 3.9E-26 153.7 9.9 103 46-148 4-113 (115)
43 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-20 4.1E-25 143.3 11.2 81 131-211 18-98 (99)
44 2lxi_A RNA-binding protein 10; 99.8 2.3E-20 7.8E-25 139.6 7.3 85 132-216 1-87 (91)
45 3s8s_A Histone-lysine N-methyl 99.8 1.7E-19 5.7E-24 139.7 11.8 83 130-212 4-86 (110)
46 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-19 3.8E-24 137.5 10.5 81 254-336 13-95 (105)
47 2lea_A Serine/arginine-rich sp 99.8 3.1E-20 1.1E-24 149.6 7.6 125 87-215 6-130 (135)
48 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5.1E-24 135.4 10.5 83 249-333 13-97 (100)
49 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4.2E-24 137.7 10.1 75 256-332 18-98 (99)
50 2wbr_A GW182, gawky, LD47780P; 99.8 3E-19 1E-23 128.6 10.1 73 257-331 7-79 (89)
51 2lkz_A RNA-binding protein 5; 99.8 1E-19 3.6E-24 136.5 8.0 82 130-211 7-94 (95)
52 1x4d_A Matrin 3; structural ge 99.8 4.5E-19 1.5E-23 134.3 10.9 78 255-334 13-93 (102)
53 2cq1_A PTB-like protein L; RRM 99.8 2E-18 7E-23 130.8 13.7 82 253-336 11-94 (101)
54 3lqv_A PRE-mRNA branch site pr 99.8 2.4E-19 8.3E-24 140.6 8.4 104 44-158 5-109 (115)
55 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.4E-19 2.5E-23 130.5 10.5 83 130-212 4-86 (87)
56 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.6E-23 127.8 11.7 81 133-213 2-82 (83)
57 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-18 8.1E-23 134.9 13.8 92 125-216 8-99 (115)
58 2ad9_A Polypyrimidine tract-bi 99.8 8.9E-19 3E-23 136.1 10.9 82 253-336 27-110 (119)
59 2cq0_A Eukaryotic translation 99.8 2.2E-18 7.6E-23 132.2 13.0 89 126-214 9-97 (103)
60 2hvz_A Splicing factor, argini 99.8 7.1E-19 2.4E-23 134.5 9.9 93 48-141 1-100 (101)
61 2cqc_A Arginine/serine-rich sp 99.8 1.9E-18 6.6E-23 130.5 11.9 87 125-211 8-94 (95)
62 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9E-19 3.1E-23 146.5 11.1 125 90-214 11-154 (165)
63 1whw_A Hypothetical protein ri 99.8 2.2E-18 7.5E-23 131.3 12.2 87 129-215 5-91 (99)
64 1wex_A Hypothetical protein (r 99.8 2.2E-18 7.5E-23 131.5 12.0 81 253-335 11-93 (104)
65 2dgo_A Cytotoxic granule-assoc 99.8 6.5E-18 2.2E-22 132.4 15.0 83 254-338 12-100 (115)
66 2dgs_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 130.3 12.8 87 128-215 6-92 (99)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5.1E-23 128.2 10.5 82 129-210 4-85 (85)
68 2do4_A Squamous cell carcinoma 99.8 3.8E-18 1.3E-22 130.2 12.9 86 127-213 12-97 (100)
69 2x1f_A MRNA 3'-END-processing 99.8 2E-18 6.8E-23 130.7 11.1 83 131-213 1-83 (96)
70 2dnz_A Probable RNA-binding pr 99.8 2.6E-18 9E-23 129.8 11.7 85 130-214 3-87 (95)
71 2cpz_A CUG triplet repeat RNA- 99.8 2.7E-18 9.1E-23 134.6 12.2 88 127-214 20-107 (115)
72 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3E-18 1E-22 131.3 12.0 88 128-215 8-95 (102)
73 1x5t_A Splicing factor 3B subu 99.8 2E-18 6.7E-23 130.8 10.8 86 130-215 3-89 (96)
74 2e5h_A Zinc finger CCHC-type a 99.8 3.5E-18 1.2E-22 128.8 12.0 84 127-210 11-94 (94)
75 1x5u_A Splicing factor 3B subu 99.8 2.9E-18 1E-22 132.1 11.6 89 126-214 9-97 (105)
76 2do0_A HnRNP M, heterogeneous 99.8 1.1E-17 3.7E-22 130.9 14.9 82 254-337 12-98 (114)
77 2dnm_A SRP46 splicing factor; 99.8 2.3E-18 7.7E-23 132.2 10.7 89 126-214 7-95 (103)
78 3r27_A HnRNP L, heterogeneous 99.8 2.6E-18 9E-23 128.6 10.6 85 38-124 12-98 (100)
79 1x4h_A RNA-binding protein 28; 99.8 5.2E-18 1.8E-22 132.1 12.7 89 127-215 10-104 (111)
80 1why_A Hypothetical protein ri 99.8 4.9E-18 1.7E-22 128.7 12.2 80 254-335 14-95 (97)
81 2jrs_A RNA-binding protein 39; 99.8 2.7E-18 9.1E-23 132.7 10.9 87 126-212 20-106 (108)
82 1x4f_A Matrin 3; structural ge 99.8 2E-18 6.9E-23 132.5 10.0 80 254-335 22-104 (112)
83 1p27_B RNA-binding protein 8A; 99.8 2.4E-18 8.1E-23 132.9 10.5 86 127-212 18-103 (106)
84 2cpj_A Non-POU domain-containi 99.8 4.5E-18 1.5E-22 129.5 11.8 81 253-335 11-91 (99)
85 3p5t_L Cleavage and polyadenyl 99.8 4.2E-19 1.4E-23 132.6 5.8 81 133-213 2-84 (90)
86 2la6_A RNA-binding protein FUS 99.8 4.5E-18 1.5E-22 129.5 11.5 85 126-210 7-99 (99)
87 2ytc_A PRE-mRNA-splicing facto 99.8 4.2E-18 1.4E-22 125.8 10.9 77 253-331 8-85 (85)
88 1x4d_A Matrin 3; structural ge 99.8 2.3E-18 8E-23 130.3 9.7 87 37-125 5-94 (102)
89 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.1E-17 3.9E-22 128.3 13.7 83 253-337 11-97 (103)
90 2dnh_A Bruno-like 5, RNA bindi 99.8 7.2E-18 2.4E-22 129.9 12.5 89 126-215 9-100 (105)
91 1x4g_A Nucleolysin TIAR; struc 99.8 6.5E-18 2.2E-22 131.0 12.4 80 255-336 23-102 (109)
92 1sjq_A Polypyrimidine tract-bi 99.8 1.9E-18 6.5E-23 130.8 8.9 83 43-127 12-96 (105)
93 2cqi_A Nucleolysin TIAR; RNA r 99.8 8E-18 2.7E-22 129.1 12.5 89 40-128 8-98 (103)
94 3ns6_A Eukaryotic translation 99.8 8.7E-19 3E-23 133.5 6.8 82 130-211 4-92 (100)
95 2dgx_A KIAA0430 protein; RRM d 99.8 6.8E-18 2.3E-22 127.6 11.7 78 256-335 8-92 (96)
96 2cph_A RNA binding motif prote 99.8 8.6E-18 2.9E-22 129.9 12.6 89 126-214 9-99 (107)
97 2cq1_A PTB-like protein L; RRM 99.8 7E-18 2.4E-22 127.9 11.7 86 40-127 8-95 (101)
98 2d9p_A Polyadenylate-binding p 99.8 9.8E-18 3.4E-22 128.6 12.7 88 126-215 9-96 (103)
99 2lxi_A RNA-binding protein 10; 99.8 1E-18 3.4E-23 130.6 6.9 76 258-335 2-85 (91)
100 2cpf_A RNA binding motif prote 99.8 4.6E-18 1.6E-22 129.2 10.7 86 130-215 3-91 (98)
101 2khc_A Testis-specific RNP-typ 99.8 2.7E-18 9.3E-23 135.2 9.8 85 126-210 34-118 (118)
102 1x5s_A Cold-inducible RNA-bind 99.8 4.1E-18 1.4E-22 130.5 10.5 88 128-215 8-95 (102)
103 2lea_A Serine/arginine-rich sp 99.8 1.5E-18 5E-23 139.7 8.2 119 176-336 6-130 (135)
104 3s8s_A Histone-lysine N-methyl 99.8 4.9E-18 1.7E-22 131.4 10.8 77 255-333 4-86 (110)
105 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-18 9.2E-23 134.6 9.3 104 128-281 4-107 (115)
106 2fy1_A RNA-binding motif prote 99.8 7E-18 2.4E-22 132.1 11.6 85 129-214 4-88 (116)
107 2dng_A Eukaryotic translation 99.8 1.3E-17 4.6E-22 127.8 12.9 87 126-214 9-95 (103)
108 2cq3_A RNA-binding protein 9; 99.8 2.1E-17 7.2E-22 126.7 14.0 81 253-335 11-95 (103)
109 2lkz_A RNA-binding protein 5; 99.8 1.7E-18 5.8E-23 129.8 7.7 76 255-332 7-94 (95)
110 2cq0_A Eukaryotic translation 99.8 1.1E-17 3.6E-22 128.4 12.3 83 253-337 11-99 (103)
111 2cpe_A RNA-binding protein EWS 99.8 1E-17 3.5E-22 130.9 12.4 89 126-214 9-105 (113)
112 2dnq_A RNA-binding protein 4B; 99.8 1.2E-17 4.1E-22 124.7 12.2 79 254-336 5-83 (90)
113 1wex_A Hypothetical protein (r 99.7 1.2E-17 3.9E-22 127.5 12.2 83 42-126 10-94 (104)
114 1oo0_B CG8781-PA, drosophila Y 99.7 6.2E-18 2.1E-22 131.4 10.9 87 127-213 21-107 (110)
115 3s7r_A Heterogeneous nuclear r 99.7 7.5E-18 2.6E-22 125.0 10.9 81 128-209 7-87 (87)
116 2d9p_A Polyadenylate-binding p 99.7 9.4E-18 3.2E-22 128.7 11.7 90 39-128 7-98 (103)
117 1whw_A Hypothetical protein ri 99.7 1.4E-17 4.6E-22 126.9 12.4 80 255-336 6-91 (99)
118 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-17 4.3E-22 128.2 12.3 88 126-215 9-97 (104)
119 2dnz_A Probable RNA-binding pr 99.7 1.3E-17 4.4E-22 125.9 12.1 80 256-337 4-89 (95)
120 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-17 5.4E-22 130.2 13.0 82 252-335 20-107 (115)
121 2cq3_A RNA-binding protein 9; 99.7 1.8E-17 6E-22 127.2 13.0 89 39-127 7-97 (103)
122 2dhg_A TRNA selenocysteine ass 99.7 5.1E-18 1.8E-22 130.5 10.0 87 128-215 5-93 (104)
123 2kxn_B Transformer-2 protein h 99.7 4.6E-18 1.6E-22 135.6 10.0 88 126-213 40-127 (129)
124 2div_A TRNA selenocysteine ass 99.7 6E-18 2E-22 128.8 10.1 84 129-212 6-94 (99)
125 2dgp_A Bruno-like 4, RNA bindi 99.7 7.1E-18 2.4E-22 130.1 10.7 89 126-214 7-98 (106)
126 1x4c_A Splicing factor, argini 99.7 2.7E-17 9.2E-22 127.2 13.9 79 255-336 13-96 (108)
127 2cqd_A RNA-binding region cont 99.7 1.3E-17 4.3E-22 131.0 12.1 89 126-215 11-99 (116)
128 2dgu_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 125.7 13.9 79 255-337 9-87 (103)
129 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-17 4.6E-22 129.4 11.9 86 42-129 26-113 (119)
130 1x5u_A Splicing factor 3B subu 99.7 1.4E-17 4.8E-22 128.2 11.9 88 39-126 7-98 (105)
131 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-17 8.2E-22 126.9 13.1 86 42-127 10-101 (105)
132 1x4a_A Splicing factor, argini 99.7 3.1E-17 1.1E-21 127.1 13.8 80 254-335 19-101 (109)
133 2cqp_A RNA-binding protein 12; 99.7 7.2E-18 2.5E-22 128.1 10.0 85 128-212 11-95 (98)
134 2ywk_A Putative RNA-binding pr 99.7 8.5E-18 2.9E-22 126.9 10.1 84 127-211 11-94 (95)
135 2cpf_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 126.2 11.6 79 256-336 4-91 (98)
136 2jwn_A Embryonic polyadenylate 99.7 5.3E-19 1.8E-23 140.7 3.5 81 131-212 35-115 (124)
137 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-17 5.2E-22 135.0 12.2 88 128-215 38-125 (139)
138 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4.2E-22 122.7 10.6 75 258-334 2-82 (83)
139 2cq2_A Hypothetical protein LO 99.7 1.2E-17 4E-22 128.3 10.8 79 255-335 23-108 (114)
140 2cqg_A TDP-43, TAR DNA-binding 99.7 3E-17 1E-21 125.9 13.2 89 125-215 8-96 (103)
141 1x4a_A Splicing factor, argini 99.7 2.6E-17 9E-22 127.6 12.9 88 40-127 15-103 (109)
142 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.8E-18 3.3E-22 124.4 10.0 76 256-333 5-86 (87)
143 2cph_A RNA binding motif prote 99.7 2.4E-17 8.2E-22 127.4 12.6 82 253-336 11-100 (107)
144 2do4_A Squamous cell carcinoma 99.7 2.3E-17 7.9E-22 125.8 12.3 80 254-335 14-98 (100)
145 2cqd_A RNA-binding region cont 99.7 4.6E-17 1.6E-21 127.7 14.4 83 252-337 12-100 (116)
146 2jvr_A Nucleolar protein 3; RN 99.7 6.2E-18 2.1E-22 130.3 9.1 77 256-334 27-106 (111)
147 3ulh_A THO complex subunit 4; 99.7 1.5E-17 5.1E-22 128.6 11.4 84 126-210 23-106 (107)
148 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.3E-17 4.5E-22 123.1 10.6 75 255-331 5-85 (85)
149 2la4_A Nuclear and cytoplasmic 99.7 6E-18 2.1E-22 129.3 9.0 76 256-333 26-101 (101)
150 2dh8_A DAZ-associated protein 99.7 9E-18 3.1E-22 129.3 10.0 88 127-215 11-98 (105)
151 2e5h_A Zinc finger CCHC-type a 99.7 1.9E-17 6.3E-22 124.8 11.5 77 253-331 12-94 (94)
152 2dgs_A DAZ-associated protein 99.7 2.6E-17 9.1E-22 125.2 12.5 80 254-336 7-92 (99)
153 2e5j_A Methenyltetrahydrofolat 99.7 3E-17 1E-21 124.3 12.7 82 42-124 14-95 (97)
154 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.5E-22 129.0 10.9 87 127-214 20-106 (109)
155 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.9E-22 124.3 10.2 82 131-212 3-85 (88)
156 1s79_A Lupus LA protein; RRM, 99.7 5.6E-18 1.9E-22 129.3 8.6 83 127-211 6-88 (103)
157 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.5E-17 5.1E-22 127.4 11.0 80 255-336 10-95 (102)
158 1x5s_A Cold-inducible RNA-bind 99.7 2.7E-17 9.1E-22 125.9 12.4 85 43-127 8-96 (102)
159 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-17 4E-22 125.4 10.1 80 254-335 5-88 (92)
160 2do0_A HnRNP M, heterogeneous 99.7 5.2E-17 1.8E-21 127.0 14.2 86 127-213 10-95 (114)
161 3n9u_C Cleavage and polyadenyl 99.7 7.7E-18 2.6E-22 138.7 9.9 82 131-212 54-137 (156)
162 3ucg_A Polyadenylate-binding p 99.7 1.4E-17 4.7E-22 124.2 10.3 80 132-212 6-85 (89)
163 2dnm_A SRP46 splicing factor; 99.7 1.8E-17 6.2E-22 127.1 11.1 81 253-335 9-95 (103)
164 1x4e_A RNA binding motif, sing 99.7 2.6E-18 9E-23 126.9 6.1 81 130-210 3-83 (85)
165 2cqc_A Arginine/serine-rich sp 99.7 2.4E-17 8.2E-22 124.4 11.4 79 252-332 10-94 (95)
166 2dgt_A RNA-binding protein 30; 99.7 3.8E-17 1.3E-21 122.5 12.3 79 254-336 7-85 (92)
167 2cpj_A Non-POU domain-containi 99.7 3.1E-17 1.1E-21 124.8 12.0 84 40-125 8-91 (99)
168 2dnq_A RNA-binding protein 4B; 99.7 3.3E-17 1.1E-21 122.3 11.7 80 44-127 5-84 (90)
169 2ek1_A RNA-binding protein 12; 99.7 7.1E-18 2.4E-22 127.4 8.2 82 130-211 13-94 (95)
170 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-17 4E-22 120.3 8.8 73 46-120 6-78 (89)
171 2x1f_A MRNA 3'-END-processing 99.7 2E-17 7E-22 125.0 10.6 76 257-334 2-83 (96)
172 2dgv_A HnRNP M, heterogeneous 99.7 2.1E-17 7.3E-22 123.9 10.6 84 129-214 5-88 (92)
173 2dgw_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 122.4 11.9 83 128-213 6-88 (91)
174 1x5t_A Splicing factor 3B subu 99.7 1.7E-17 5.8E-22 125.5 10.1 79 256-336 4-89 (96)
175 2dnp_A RNA-binding protein 14; 99.7 4.6E-17 1.6E-21 121.5 12.1 77 255-335 7-83 (90)
176 1whx_A Hypothetical protein ri 99.7 1.5E-17 5.1E-22 129.1 9.7 76 257-334 10-85 (111)
177 2dhg_A TRNA selenocysteine ass 99.7 2.1E-17 7.2E-22 127.0 10.5 82 255-338 7-95 (104)
178 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.4E-22 138.9 10.6 137 179-336 11-155 (165)
179 2jrs_A RNA-binding protein 39; 99.7 3.6E-17 1.2E-21 126.3 11.8 83 250-334 19-107 (108)
180 2fy1_A RNA-binding motif prote 99.7 4.2E-17 1.5E-21 127.6 12.3 80 256-337 6-90 (116)
181 3pgw_S U1-70K; protein-RNA com 99.7 2.8E-18 9.6E-23 164.9 6.7 86 129-214 99-184 (437)
182 2kxn_B Transformer-2 protein h 99.7 1.9E-17 6.5E-22 132.0 10.4 87 38-124 37-127 (129)
183 2mss_A Protein (musashi1); RNA 99.7 5.5E-18 1.9E-22 121.9 6.6 75 134-209 1-75 (75)
184 2ywk_A Putative RNA-binding pr 99.7 2.1E-17 7.3E-22 124.7 10.2 78 253-332 12-94 (95)
185 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.5E-18 2.6E-22 128.4 7.6 84 127-212 14-98 (100)
186 2dgx_A KIAA0430 protein; RRM d 99.7 2.8E-17 9.5E-22 124.2 10.7 82 129-213 6-91 (96)
187 2cpd_A Apobec-1 stimulating pr 99.7 8.6E-17 2.9E-21 122.3 13.4 81 253-335 11-91 (99)
188 2m2b_A RNA-binding protein 10; 99.7 8.4E-18 2.9E-22 134.8 8.1 86 127-213 18-109 (131)
189 3p5t_L Cleavage and polyadenyl 99.7 3.4E-18 1.2E-22 127.7 5.4 76 258-335 2-85 (90)
190 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-17 5.5E-22 124.9 9.1 78 255-335 6-85 (93)
191 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4.2E-22 128.3 8.6 83 131-213 7-89 (104)
192 4a8x_A RNA-binding protein wit 99.7 3.4E-17 1.2E-21 121.7 10.8 76 257-334 4-86 (88)
193 1x4f_A Matrin 3; structural ge 99.7 4.5E-17 1.5E-21 125.0 11.5 82 42-125 20-104 (112)
194 1x4h_A RNA-binding protein 28; 99.7 6.9E-17 2.4E-21 125.7 12.8 81 253-335 11-103 (111)
195 2err_A Ataxin-2-binding protei 99.7 2.4E-17 8.1E-22 127.7 9.9 82 42-123 24-107 (109)
196 1p27_B RNA-binding protein 8A; 99.7 2.4E-17 8.3E-22 127.1 9.9 80 254-335 20-105 (106)
197 2err_A Ataxin-2-binding protei 99.7 2E-17 7E-22 128.0 9.5 80 252-333 24-107 (109)
198 2kt5_A RNA and export factor-b 99.7 5.7E-17 2E-21 128.8 12.4 86 128-214 31-116 (124)
199 3ex7_B RNA-binding protein 8A; 99.7 2.6E-17 8.8E-22 131.2 10.3 89 127-215 17-105 (126)
200 1oo0_B CG8781-PA, drosophila Y 99.7 3.8E-17 1.3E-21 126.9 10.9 80 254-335 23-108 (110)
201 2khc_A Testis-specific RNP-typ 99.7 2.3E-17 7.9E-22 129.9 9.7 80 42-121 35-118 (118)
202 1h2v_Z 20 kDa nuclear CAP bind 99.7 5E-17 1.7E-21 134.6 12.2 88 127-214 34-121 (156)
203 1u6f_A Tcubp1, RNA-binding pro 99.7 9.6E-17 3.3E-21 130.2 13.6 86 42-127 37-126 (139)
204 2dis_A Unnamed protein product 99.7 3E-17 1E-21 127.3 10.1 87 129-215 5-95 (109)
205 1why_A Hypothetical protein ri 99.7 6.2E-17 2.1E-21 122.6 11.5 79 44-124 14-94 (97)
206 2dgp_A Bruno-like 4, RNA bindi 99.7 6.2E-17 2.1E-21 124.8 11.7 81 253-335 9-98 (106)
207 2dng_A Eukaryotic translation 99.7 9.6E-17 3.3E-21 123.0 12.7 79 254-336 12-96 (103)
208 2cpi_A CCR4-NOT transcription 99.7 5.2E-17 1.8E-21 126.2 11.3 86 128-213 11-102 (111)
209 1x4c_A Splicing factor, argini 99.7 6.4E-17 2.2E-21 125.1 11.7 80 44-126 12-96 (108)
210 1x5p_A Negative elongation fac 99.7 1.4E-16 4.9E-21 120.6 13.4 77 255-335 13-89 (97)
211 2jvo_A Nucleolar protein 3; nu 99.7 3.5E-17 1.2E-21 126.3 10.1 78 253-334 27-104 (108)
212 2la6_A RNA-binding protein FUS 99.7 3.8E-17 1.3E-21 124.3 10.1 79 251-331 7-99 (99)
213 2xnq_A Nuclear polyadenylated 99.7 6.6E-17 2.3E-21 122.2 11.3 77 253-333 18-95 (97)
214 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-17 5.4E-22 128.1 8.0 79 45-123 26-105 (111)
215 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-17 3.4E-22 121.2 6.5 76 133-209 1-76 (77)
216 2hvz_A Splicing factor, argini 99.7 3.5E-17 1.2E-21 125.0 9.8 77 258-336 1-78 (101)
217 1wg5_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 124.4 11.0 84 128-213 11-95 (104)
218 2a3j_A U1 small nuclear ribonu 99.7 4.1E-17 1.4E-21 129.1 10.4 79 254-334 26-111 (127)
219 2m2b_A RNA-binding protein 10; 99.7 3.5E-17 1.2E-21 131.2 10.1 81 252-335 18-110 (131)
220 1x4b_A Heterogeneous nuclear r 99.7 5.7E-17 2E-21 127.2 11.0 84 131-215 26-109 (116)
221 2cpy_A RNA-binding protein 12; 99.7 3E-17 1E-21 128.2 9.3 83 128-212 11-94 (114)
222 2cpe_A RNA-binding protein EWS 99.7 9.6E-17 3.3E-21 125.3 12.0 81 254-336 12-106 (113)
223 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-16 5E-21 122.2 12.7 78 255-336 13-97 (104)
224 2e5i_A Heterogeneous nuclear r 99.7 1.5E-16 5.3E-21 124.5 13.0 76 257-334 25-103 (124)
225 1sjr_A Polypyrimidine tract-bi 99.7 8E-17 2.7E-21 131.4 11.8 81 44-124 43-125 (164)
226 2cpi_A CCR4-NOT transcription 99.7 7.8E-17 2.7E-21 125.2 11.2 77 256-334 14-102 (111)
227 1x5o_A RNA binding motif, sing 99.7 8.9E-17 3E-21 125.7 11.4 85 127-212 20-112 (114)
228 2dgt_A RNA-binding protein 30; 99.7 9.6E-17 3.3E-21 120.3 11.0 81 43-127 6-86 (92)
229 2jvo_A Nucleolar protein 3; nu 99.7 5.2E-17 1.8E-21 125.3 9.8 79 43-125 27-105 (108)
230 2la4_A Nuclear and cytoplasmic 99.7 1.2E-17 4.2E-22 127.5 6.1 77 44-122 24-100 (101)
231 2div_A TRNA selenocysteine ass 99.7 5.8E-17 2E-21 123.3 9.8 79 255-335 7-96 (99)
232 1wez_A HnRNP H', FTP-3, hetero 99.7 4.1E-17 1.4E-21 124.5 8.9 83 128-213 11-93 (102)
233 2xnq_A Nuclear polyadenylated 99.7 8E-17 2.7E-21 121.8 10.5 78 42-123 17-95 (97)
234 1wf1_A RNA-binding protein RAL 99.7 6.9E-17 2.3E-21 125.4 10.4 96 110-213 5-101 (110)
235 2cq4_A RNA binding motif prote 99.7 4E-17 1.4E-21 127.7 9.1 81 131-212 24-104 (114)
236 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.4E-17 2.2E-21 131.5 10.7 83 127-209 58-140 (140)
237 2ki2_A SS-DNA binding protein 99.7 5.3E-18 1.8E-22 126.7 3.8 81 133-214 2-82 (90)
238 3ns6_A Eukaryotic translation 99.7 3E-17 1E-21 124.9 8.1 74 257-332 6-92 (100)
239 1nu4_A U1A RNA binding domain; 99.7 7.3E-17 2.5E-21 122.3 10.2 78 255-334 6-90 (97)
240 2e5j_A Methenyltetrahydrofolat 99.7 6.9E-17 2.4E-21 122.3 10.0 77 255-334 17-95 (97)
241 2db1_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 127.3 9.7 83 128-212 13-98 (118)
242 1x4g_A Nucleolysin TIAR; struc 99.7 8.1E-17 2.8E-21 124.8 10.4 83 44-128 22-104 (109)
243 2a3j_A U1 small nuclear ribonu 99.7 8.3E-17 2.8E-21 127.3 10.5 81 44-124 26-111 (127)
244 1wf1_A RNA-binding protein RAL 99.7 1.9E-16 6.6E-21 122.8 12.4 76 256-335 26-102 (110)
245 2ytc_A PRE-mRNA-splicing facto 99.7 6.8E-17 2.3E-21 119.2 9.3 77 43-121 8-85 (85)
246 2fc9_A NCL protein; structure 99.7 2E-16 6.9E-21 120.7 12.3 83 128-214 11-93 (101)
247 2hgl_A HNRPF protein, heteroge 99.7 3.9E-17 1.3E-21 130.7 8.5 82 128-211 40-124 (136)
248 2dnp_A RNA-binding protein 14; 99.7 9.7E-17 3.3E-21 119.7 10.1 80 43-126 5-84 (90)
249 1sjr_A Polypyrimidine tract-bi 99.7 1.8E-16 6.1E-21 129.4 12.4 77 256-334 45-125 (164)
250 2fc8_A NCL protein; structure 99.7 2.3E-16 8E-21 120.6 12.5 86 126-214 9-94 (102)
251 3ucg_A Polyadenylate-binding p 99.7 8.7E-17 3E-21 119.8 9.8 74 257-333 6-85 (89)
252 2fc9_A NCL protein; structure 99.7 2.2E-16 7.6E-21 120.5 12.2 79 253-336 11-94 (101)
253 2kvi_A Nuclear polyadenylated 99.7 4.8E-17 1.7E-21 122.9 8.3 79 254-336 7-86 (96)
254 2e44_A Insulin-like growth fac 99.7 1.3E-16 4.3E-21 120.7 10.6 80 44-123 12-92 (96)
255 3ulh_A THO complex subunit 4; 99.7 1.2E-16 4E-21 123.5 10.7 77 253-331 25-106 (107)
256 2dh8_A DAZ-associated protein 99.7 9.2E-17 3.2E-21 123.6 10.0 80 253-335 12-97 (105)
257 3ex7_B RNA-binding protein 8A; 99.7 8E-17 2.7E-21 128.3 10.0 82 253-336 18-105 (126)
258 2nlw_A Eukaryotic translation 99.7 5.8E-17 2E-21 124.6 8.8 83 128-212 11-100 (105)
259 2dis_A Unnamed protein product 99.7 2E-16 6.7E-21 122.7 11.7 79 256-336 7-95 (109)
260 1wel_A RNA-binding protein 12; 99.7 3E-17 1E-21 130.3 7.0 84 128-212 21-104 (124)
261 2dgu_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 121.3 11.1 79 44-126 8-86 (103)
262 2kt5_A RNA and export factor-b 99.7 4.7E-16 1.6E-20 123.5 13.6 84 42-125 30-116 (124)
263 1p1t_A Cleavage stimulation fa 99.7 3.9E-17 1.3E-21 125.5 7.0 77 256-334 7-89 (104)
264 2kvi_A Nuclear polyadenylated 99.7 1.3E-16 4.5E-21 120.5 9.8 79 44-126 7-86 (96)
265 2cqp_A RNA-binding protein 12; 99.7 1.5E-16 5E-21 120.8 10.0 81 43-123 11-95 (98)
266 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-17 7.3E-22 118.8 5.0 75 134-209 1-75 (75)
267 2cpd_A Apobec-1 stimulating pr 99.7 3.5E-16 1.2E-20 118.9 12.0 80 43-126 11-92 (99)
268 2dnn_A RNA-binding protein 12; 99.7 1.2E-16 4.3E-21 122.8 9.5 78 131-211 15-92 (109)
269 1s79_A Lupus LA protein; RRM, 99.7 7.9E-17 2.7E-21 122.9 8.3 73 256-331 10-87 (103)
270 3zzy_A Polypyrimidine tract-bi 99.7 2E-16 6.9E-21 124.3 10.8 78 255-334 26-107 (130)
271 2cq4_A RNA binding motif prote 99.7 2.6E-17 8.8E-22 128.7 5.6 76 255-333 23-104 (114)
272 2cpx_A Hypothetical protein FL 99.7 4.3E-16 1.5E-20 121.9 12.6 81 254-336 22-108 (115)
273 2cpx_A Hypothetical protein FL 99.7 3.7E-16 1.3E-20 122.3 12.2 85 44-128 22-110 (115)
274 2hgn_A Heterogeneous nuclear r 99.7 2.1E-17 7.3E-22 132.7 5.0 123 86-213 2-124 (139)
275 3s7r_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 118.0 8.9 78 42-120 6-87 (87)
276 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-16 5.3E-21 119.4 9.2 80 44-126 5-86 (93)
277 2diu_A KIAA0430 protein; struc 99.7 3.2E-16 1.1E-20 113.8 10.4 75 256-336 7-87 (96)
278 2lmi_A GRSF-1, G-rich sequence 99.7 5.1E-17 1.8E-21 125.3 6.6 83 127-211 6-91 (107)
279 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4E-17 1.4E-21 124.3 6.0 80 42-123 14-98 (100)
280 1x5o_A RNA binding motif, sing 99.7 4.6E-16 1.6E-20 121.6 11.8 77 255-333 23-112 (114)
281 1x5p_A Negative elongation fac 99.7 5.5E-16 1.9E-20 117.3 11.9 86 38-127 6-91 (97)
282 1fj7_A Nucleolin RBD1, protein 99.7 1.8E-17 6.3E-22 126.6 3.6 84 129-214 14-97 (101)
283 2cqg_A TDP-43, TAR DNA-binding 99.7 8.8E-16 3E-20 117.6 13.0 79 254-336 12-96 (103)
284 3n9u_C Cleavage and polyadenyl 99.7 1.5E-16 5.2E-21 131.0 9.3 75 256-332 54-136 (156)
285 2fc8_A NCL protein; structure 99.7 5.7E-16 2E-20 118.5 11.9 81 254-336 12-95 (102)
286 1x4b_A Heterogeneous nuclear r 99.7 2.5E-16 8.4E-21 123.5 10.1 79 255-336 25-109 (116)
287 2rs2_A Musashi-1, RNA-binding 99.7 2.9E-16 9.9E-21 121.4 10.3 80 253-335 21-106 (109)
288 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.2E-16 1.4E-20 129.0 11.9 80 254-335 36-121 (156)
289 1x4e_A RNA binding motif, sing 99.7 4.4E-17 1.5E-21 120.2 5.3 74 256-331 4-83 (85)
290 2j8a_A Histone-lysine N-methyl 99.7 1.3E-16 4.3E-21 122.7 7.9 80 133-212 3-96 (136)
291 2nlw_A Eukaryotic translation 99.7 2.9E-16 9.9E-21 120.6 10.0 78 255-334 13-101 (105)
292 2ek1_A RNA-binding protein 12; 99.7 7.4E-17 2.5E-21 121.7 6.5 76 255-332 13-94 (95)
293 2krb_A Eukaryotic translation 99.7 5.7E-17 2E-21 118.4 5.7 73 132-206 1-80 (81)
294 1whx_A Hypothetical protein ri 99.7 1.7E-16 5.7E-21 123.2 8.6 79 44-124 7-85 (111)
295 1nu4_A U1A RNA binding domain; 99.7 1.2E-16 4E-21 121.1 7.5 82 129-213 5-90 (97)
296 2diu_A KIAA0430 protein; struc 99.7 6.8E-16 2.3E-20 112.1 11.1 75 46-126 7-87 (96)
297 3q2s_C Cleavage and polyadenyl 99.7 1.2E-16 4.1E-21 140.4 8.1 81 131-211 67-149 (229)
298 2e44_A Insulin-like growth fac 99.7 5.9E-16 2E-20 117.0 10.9 76 256-333 14-92 (96)
299 2e5g_A U6 snRNA-specific termi 99.7 7.1E-16 2.4E-20 116.0 11.0 77 256-335 7-84 (94)
300 3beg_B Splicing factor, argini 99.7 3.2E-16 1.1E-20 122.5 9.3 77 256-335 15-96 (115)
301 1fjc_A Nucleolin RBD2, protein 99.7 6.1E-16 2.1E-20 116.9 10.6 81 253-335 12-93 (96)
302 2dgw_A Probable RNA-binding pr 99.7 6.5E-16 2.2E-20 115.5 10.6 80 43-124 6-88 (91)
303 1fj7_A Nucleolin RBD1, protein 99.7 1.7E-16 5.9E-21 121.1 7.5 77 255-335 15-97 (101)
304 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.3E-21 114.7 6.3 69 259-330 1-75 (75)
305 1wg1_A KIAA1579 protein, homol 99.7 5.9E-16 2E-20 114.8 10.1 74 257-333 5-78 (88)
306 2dha_A FLJ20171 protein; RRM d 99.7 1.5E-16 5.1E-21 125.0 7.2 80 130-211 21-104 (123)
307 2ki2_A SS-DNA binding protein 99.7 5.2E-17 1.8E-21 121.2 4.3 75 258-335 2-82 (90)
308 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7E-16 2.4E-20 125.3 11.3 76 253-330 59-140 (140)
309 2lcw_A RNA-binding protein FUS 99.5 9.1E-18 3.1E-22 131.7 0.0 87 128-214 3-97 (116)
310 2jwn_A Embryonic polyadenylate 99.7 4.9E-16 1.7E-20 123.4 10.0 75 257-334 36-116 (124)
311 1fjc_A Nucleolin RBD2, protein 99.6 2.9E-16 9.8E-21 118.7 8.2 82 127-213 11-92 (96)
312 2cpy_A RNA-binding protein 12; 99.6 3.5E-16 1.2E-20 122.1 8.8 81 42-123 10-94 (114)
313 2e5i_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 118.2 13.0 75 48-124 26-103 (124)
314 3zzy_A Polypyrimidine tract-bi 99.6 7.5E-16 2.6E-20 121.0 10.4 79 45-124 26-107 (130)
315 1wg5_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 116.8 11.4 77 255-334 13-95 (104)
316 2xs2_A Deleted in azoospermia- 99.6 1.3E-16 4.5E-21 122.0 5.7 81 130-213 7-87 (102)
317 3pgw_S U1-70K; protein-RNA com 99.6 1.7E-17 6E-22 159.4 0.8 78 255-334 100-183 (437)
318 2hgm_A HNRPF protein, heteroge 99.6 2.7E-16 9.4E-21 123.7 7.3 81 128-211 38-120 (126)
319 2hzc_A Splicing factor U2AF 65 99.6 7.5E-16 2.5E-20 114.1 9.3 73 256-329 5-86 (87)
320 1wg1_A KIAA1579 protein, homol 99.6 4.6E-16 1.6E-20 115.4 8.1 77 45-124 3-79 (88)
321 2db1_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 122.3 8.3 75 255-332 15-97 (118)
322 2krb_A Eukaryotic translation 99.6 2.5E-16 8.7E-21 114.9 6.4 69 258-328 2-81 (81)
323 1wez_A HnRNP H', FTP-3, hetero 99.6 9.8E-16 3.3E-20 116.8 9.8 76 255-334 13-93 (102)
324 2bz2_A Negative elongation fac 99.6 8.5E-16 2.9E-20 120.9 9.2 76 255-334 37-112 (121)
325 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.6E-16 9E-21 113.7 5.7 70 258-330 1-76 (77)
326 2cq2_A Hypothetical protein LO 99.6 8.1E-16 2.8E-20 118.0 8.7 78 44-123 22-106 (114)
327 2f3j_A RNA and export factor b 99.6 7.7E-16 2.6E-20 129.6 9.4 83 129-212 85-167 (177)
328 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.3E-20 113.1 9.4 75 254-334 8-85 (89)
329 2hgl_A HNRPF protein, heteroge 99.6 9.2E-16 3.2E-20 122.7 9.0 78 43-121 40-123 (136)
330 3beg_B Splicing factor, argini 99.6 9.4E-16 3.2E-20 119.8 8.6 77 45-124 14-95 (115)
331 2dnn_A RNA-binding protein 12; 99.6 1.5E-15 5.3E-20 116.7 9.6 73 256-332 15-92 (109)
332 2e5g_A U6 snRNA-specific termi 99.6 2.3E-15 8E-20 113.1 10.3 78 130-213 6-83 (94)
333 3u1l_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.6E-20 132.8 9.8 80 254-335 131-231 (240)
334 1wel_A RNA-binding protein 12; 99.6 4.2E-16 1.5E-20 123.6 6.0 75 255-332 23-103 (124)
335 2lmi_A GRSF-1, G-rich sequence 99.6 8.7E-16 3E-20 118.4 7.2 79 43-122 7-91 (107)
336 3egn_A RNA-binding protein 40; 99.6 4.8E-16 1.6E-20 126.7 5.9 87 128-214 41-132 (143)
337 2lcw_A RNA-binding protein FUS 99.4 6.1E-17 2.1E-21 127.0 0.0 80 255-336 5-98 (116)
338 2bz2_A Negative elongation fac 99.6 4.9E-15 1.7E-19 116.5 10.9 80 42-125 34-113 (121)
339 2voo_A Lupus LA protein; RNA-b 99.6 5.1E-15 1.7E-19 126.5 11.5 117 94-212 63-187 (193)
340 2hzc_A Splicing factor U2AF 65 99.6 1.6E-15 5.4E-20 112.3 7.0 73 44-119 3-86 (87)
341 1iqt_A AUF1, heterogeneous nuc 99.6 7.5E-16 2.6E-20 110.6 4.9 69 259-330 1-75 (75)
342 3egn_A RNA-binding protein 40; 99.6 2.3E-15 7.8E-20 122.6 8.4 80 254-335 42-132 (143)
343 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-15 7.3E-20 111.9 7.4 76 256-335 4-80 (88)
344 2pe8_A Splicing factor 45; RRM 99.6 8E-15 2.7E-19 111.9 10.7 83 129-211 5-93 (105)
345 3q2s_C Cleavage and polyadenyl 99.6 1.6E-15 5.5E-20 133.2 7.7 75 256-332 67-149 (229)
346 3d2w_A TAR DNA-binding protein 99.6 6.5E-15 2.2E-19 109.2 9.2 77 128-213 7-85 (89)
347 2xs2_A Deleted in azoospermia- 99.6 1.7E-15 6E-20 115.7 6.0 76 255-334 7-87 (102)
348 2f3j_A RNA and export factor b 99.6 7E-15 2.4E-19 123.8 10.3 82 43-124 84-168 (177)
349 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-14 3.8E-19 113.5 10.4 79 129-210 5-86 (114)
350 1wf0_A TDP-43, TAR DNA-binding 99.6 1.9E-15 6.5E-20 112.1 5.7 80 45-127 3-82 (88)
351 2hgn_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 122.5 4.7 75 256-334 45-124 (139)
352 2dha_A FLJ20171 protein; RRM d 99.6 4.2E-15 1.4E-19 116.7 7.1 76 45-121 21-103 (123)
353 2dit_A HIV TAT specific factor 99.6 3.6E-14 1.2E-18 110.2 12.1 84 42-125 10-104 (112)
354 2pe8_A Splicing factor 45; RRM 99.6 2.3E-14 8E-19 109.3 10.6 75 256-332 7-93 (105)
355 2hgm_A HNRPF protein, heteroge 99.6 6.4E-15 2.2E-19 115.9 7.4 75 255-332 40-120 (126)
356 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.7E-18 107.5 12.8 80 254-335 12-104 (112)
357 2dnl_A Cytoplasmic polyadenyla 99.5 5.5E-14 1.9E-18 109.6 9.3 73 44-119 5-84 (114)
358 2voo_A Lupus LA protein; RNA-b 99.5 1.4E-13 4.8E-18 117.5 12.7 73 257-332 109-186 (193)
359 3u1l_A PRE-mRNA-splicing facto 99.5 4E-14 1.4E-18 123.5 9.4 80 43-124 130-230 (240)
360 2j8a_A Histone-lysine N-methyl 99.5 2.7E-14 9.3E-19 109.8 6.5 72 258-331 3-94 (136)
361 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4.1E-18 105.4 9.6 82 130-211 3-96 (105)
362 3v4m_A Splicing factor U2AF 65 99.5 1.5E-13 5.2E-18 104.8 9.9 75 255-331 3-95 (105)
363 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5.1E-18 106.9 9.2 81 131-211 19-108 (118)
364 1jmt_A Splicing factor U2AF 35 99.4 6.3E-14 2.2E-18 106.8 4.9 72 137-209 20-103 (104)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 2E-12 6.9E-17 97.2 12.1 73 258-334 11-91 (100)
366 1jmt_A Splicing factor U2AF 35 99.4 1.8E-13 6E-18 104.4 5.9 67 262-330 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.4 7.5E-13 2.6E-17 102.9 9.5 74 256-331 19-107 (118)
368 3tht_A Alkylated DNA repair pr 99.4 6.2E-13 2.1E-17 122.4 10.5 78 252-331 13-97 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.9E-12 1E-16 96.3 11.5 79 45-126 8-93 (100)
370 3s6e_A RNA-binding protein 39; 99.4 1.4E-12 4.9E-17 100.6 9.4 74 256-331 6-91 (114)
371 3s6e_A RNA-binding protein 39; 99.4 1.7E-12 5.9E-17 100.1 9.4 77 45-121 5-91 (114)
372 3tht_A Alkylated DNA repair pr 99.3 6.2E-12 2.1E-16 115.7 8.3 78 42-121 13-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 2.8E-11 9.7E-16 87.0 8.8 75 254-333 4-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 7.6E-11 2.6E-15 90.9 9.7 78 251-330 12-93 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.6E-10 5.6E-15 83.4 7.3 75 252-331 10-93 (95)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 4.2E-10 1.4E-14 80.9 8.0 75 129-212 4-86 (91)
377 1owx_A Lupus LA protein, SS-B, 99.0 1.5E-09 5.3E-14 83.5 9.3 76 44-121 15-94 (121)
378 3dxb_A Thioredoxin N-terminall 98.9 8.3E-09 2.8E-13 90.2 12.7 68 144-211 141-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 2.1E-09 7.3E-14 77.6 5.9 71 46-121 14-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4.1E-13 89.1 7.5 61 269-331 141-211 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.7 8.6E-07 2.9E-11 64.8 13.0 91 256-349 7-100 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.6 2.2E-07 7.6E-12 68.3 8.8 75 128-208 17-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.6 2.9E-07 9.9E-12 67.7 9.1 74 44-119 18-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.5 1.4E-06 4.9E-11 63.6 10.7 90 44-145 5-99 (104)
385 1wey_A Calcipressin 1; structu 98.4 2.4E-06 8.2E-11 62.8 9.5 74 258-333 6-84 (104)
386 1whv_A Poly(A)-specific ribonu 97.8 0.00012 4.3E-09 52.7 8.9 57 45-106 14-70 (100)
387 1wey_A Calcipressin 1; structu 97.7 8.7E-05 3E-09 54.6 6.2 74 47-122 5-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00011 3.6E-09 53.3 6.5 65 48-112 2-72 (91)
389 1uw4_A UPF3X; nonsense mediate 97.6 0.00016 5.5E-09 52.3 7.0 63 258-322 2-72 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.4 0.0009 3.1E-08 50.6 9.3 72 256-331 23-95 (119)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.0009 3.1E-08 50.7 8.1 74 44-121 21-95 (119)
392 3ctr_A Poly(A)-specific ribonu 97.3 0.00019 6.6E-09 51.9 4.2 53 49-106 8-60 (101)
393 1whv_A Poly(A)-specific ribonu 96.9 0.0031 1.1E-07 45.5 7.0 54 258-316 17-70 (100)
394 2l08_A Regulator of nonsense t 96.9 0.00052 1.8E-08 49.9 2.9 67 46-112 8-80 (97)
395 2l08_A Regulator of nonsense t 96.9 0.001 3.5E-08 48.3 4.4 63 258-322 10-80 (97)
396 3p3d_A Nucleoporin 53; structu 96.7 0.0022 7.6E-08 49.2 5.0 70 258-331 8-97 (132)
397 3p3d_A Nucleoporin 53; structu 96.5 0.0035 1.2E-07 48.1 4.9 73 47-121 7-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.4 0.0018 6.1E-08 61.7 3.7 54 48-103 54-107 (464)
399 3ctr_A Poly(A)-specific ribonu 96.4 0.0049 1.7E-07 44.6 5.0 54 258-316 7-60 (101)
400 3pq1_A Poly(A) RNA polymerase; 95.7 0.0056 1.9E-07 58.2 3.4 54 258-314 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 89.6 0.97 3.3E-05 43.8 8.3 56 47-107 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 80.7 5.9 0.0002 38.3 8.8 56 257-317 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 64.1 7.8 0.00027 26.3 3.9 61 268-331 12-75 (76)
404 4e8u_A Putative uncharacterize 49.1 29 0.00098 27.8 5.2 49 49-98 14-75 (172)
405 4eyt_A Telomerase associated p 47.7 68 0.0023 22.3 8.5 67 257-327 12-85 (129)
406 2g0c_A ATP-dependent RNA helic 46.4 18 0.00062 24.3 3.4 62 58-120 12-74 (76)
407 4e8u_A Putative uncharacterize 38.5 53 0.0018 26.3 5.2 55 135-192 15-81 (172)
408 2cu1_A Mitogen-activated prote 33.8 98 0.0034 22.2 5.4 68 262-333 21-88 (103)
409 4a4j_A Pacszia, cation-transpo 31.0 1E+02 0.0034 19.4 5.3 55 258-314 4-61 (69)
410 3ts2_A Protein LIN-28 homolog 28.3 19 0.00064 28.2 1.1 28 272-303 2-29 (148)
411 4eyt_A Telomerase associated p 26.5 1.6E+02 0.0056 20.4 8.6 58 45-106 10-67 (129)
412 3fry_A Probable copper-exporti 25.7 1.4E+02 0.0046 19.2 6.2 55 47-104 6-60 (73)
413 3dxs_X Copper-transporting ATP 20.8 1.7E+02 0.0058 18.5 7.3 56 258-315 4-63 (74)
414 3j21_T 50S ribosomal protein L 20.6 1.7E+02 0.0058 20.3 4.7 55 260-314 25-82 (86)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.1e-47 Score=350.24 Aligned_cols=238 Identities=21% Similarity=0.332 Sum_probs=218.8
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCC
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ 125 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~ 125 (417)
++++|||+|||+++++++|+++|+.|| |.+|++ .+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 468999999999999999999999999 988888 6678999999999999999999999999999999999854
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
..++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|.
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccc-cHHHHHHhhhhcCcc
Q 014839 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEV-TSVDLHRHFHALCVG 284 (417)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~~~G 284 (417)
|.++.++.... .....++|||+|||.++ |+++|+++|+.| |
T Consensus 169 v~~a~~~~~~~------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G 210 (284)
T 3smz_A 169 VHWTDAGQLTP------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAV--H 210 (284)
T ss_dssp EEECCGGGCCT------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSS--S
T ss_pred EEECCCCCCCc------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCC--C
Confidence 99987542211 11334789999999995 999999999999 9
Q ss_pred ceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 285 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 285 ~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 9999999886 799999999999999999999999999999999999754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2e-46 Score=346.20 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=210.3
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 40 ~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
......+.++|||+|||+++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++ ++|..+.|+.|.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 33456778999999999999999999999999999999999864 46899999999999999995 9999999999999
Q ss_pred EecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 014839 118 NWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196 (417)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g 196 (417)
.++ ..++|||+|||+++++++|+++|+.|| .|.+++++.++. |.++|||||+|.+.++|.+|++.|+|
T Consensus 113 ~~~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 113 SHL----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEC----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEC----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCC
Confidence 986 357899999999999999999999999 999999998854 88999999999999999999999999
Q ss_pred ceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCcc-ccHHHHH
Q 014839 197 KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSE-VTSVDLH 275 (417)
Q Consensus 197 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~ 275 (417)
..+.|+.|.|.++.+....... .....+.++|||+|||.. +|+++|+
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~--------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~ 229 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT--------------------------------DSATLEGREIMIRNLSTELLDENLLR 229 (292)
T ss_dssp CEETTEECEEEECCCC-----------------------------------------CCTTTEEEEEEECTTTCCHHHHH
T ss_pred CEeCCcEEEEEECCCCcccccc--------------------------------cccCCCCceEEEECCCcccCCHHHHH
Confidence 9999999999999765332211 112234578999999999 9999999
Q ss_pred HhhhhcCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 276 RHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 276 ~~F~~~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
++|+.| |.|.+|+++++ +|+|||+|.+.++|.+|+ .|||..|+|++|+|.|++++
T Consensus 230 ~~F~~~--G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 230 ESFEGF--GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHGGG--SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHhcc--CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999 99999999764 689999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.2e-35 Score=256.15 Aligned_cols=166 Identities=28% Similarity=0.457 Sum_probs=149.4
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE
Q 014839 209 AAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED 288 (417)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~ 288 (417)
+....... .....+|||+|||+++|+++|+++|+.| |.|.+
T Consensus 92 ~~~~~~~~-------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~ 132 (213)
T 4f02_A 92 SQRDPSLR-------------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAF--GNILS 132 (213)
T ss_dssp CCCCTHHH-------------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGG--SCEEE
T ss_pred cccccccc-------------------------------------ccccccceECCcccccHHHHHHHHHhhc--CCeEE
Confidence 86432110 0012579999999999999999999999 99999
Q ss_pred EEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 289 VRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 289 v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
|+|+++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 133 ~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 133 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred EEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999876 789999999999999999999999999999999999764
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=240.19 Aligned_cols=162 Identities=43% Similarity=0.812 Sum_probs=152.1
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~ 124 (417)
|+|||+|||.++++++|+++|+.||+|.+|++++++ ++|+|||+|.+.++|.+|++.|+|..+.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999998775 46899999999999999999999999999999999987654
Q ss_pred CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
. ....+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|+|..++|++|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 3 345567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcc
Q 014839 205 RCNWAA 210 (417)
Q Consensus 205 ~v~~~~ 210 (417)
+|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.9e-34 Score=251.91 Aligned_cols=166 Identities=31% Similarity=0.568 Sum_probs=148.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
..+.+||||+|||++++|++|+++|++||+|.+|+|++++ ++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4457899999999999999999999999999999999875 368999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014839 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 199 (417)
+...... ......+|||+|||+++++++|+++|+.||.|.+++|++|. +.++|||||+|.+.++|.+|++.|||..|
T Consensus 92 ~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 92 SQRDPSL-RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCCCTHH-HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccc-cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 8654322 22345689999999999999999999999999999999884 45799999999999999999999999999
Q ss_pred CCeEEEEEEccCC
Q 014839 200 GNRQIRCNWAAKG 212 (417)
Q Consensus 200 ~g~~i~v~~~~~~ 212 (417)
+|++|.|.++.++
T Consensus 169 ~g~~i~V~~a~~~ 181 (213)
T 4f02_A 169 NDRKVFVGRFKSR 181 (213)
T ss_dssp TTEECEEEECCCH
T ss_pred CCEEEEEEEcCCC
Confidence 9999999999764
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.3e-33 Score=235.33 Aligned_cols=159 Identities=34% Similarity=0.527 Sum_probs=147.5
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
++++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
+... ..+.++|||+|||..+++++|+++|+.| |.|.++.
T Consensus 82 ~~~~---------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~ 120 (168)
T 1b7f_A 82 PGGE---------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKN 120 (168)
T ss_dssp CCSS---------------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEE
T ss_pred CCcc---------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEE
Confidence 5422 1123689999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeec
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWG 330 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 330 (417)
+.++ +|+|||+|.+.++|.+|++.|||..|.| ++|+|+||
T Consensus 121 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 121 ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9876 4899999999999999999999999988 99999986
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.5e-33 Score=235.91 Aligned_cols=161 Identities=26% Similarity=0.476 Sum_probs=150.3
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
++++|||+|||+++++++|+++|+.||+|.+|++++++ ++|+|||+|.+.++|.+|++.|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999998875 35899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
+.. .....++|+|+|||.++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGG---ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCS---STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCc---ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 654 34556899999999999999999999999999999999998899999999999999999999999999999988
Q ss_pred --eEEEEEEc
Q 014839 202 --RQIRCNWA 209 (417)
Q Consensus 202 --~~i~v~~~ 209 (417)
++|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999985
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-33 Score=233.51 Aligned_cols=160 Identities=26% Similarity=0.523 Sum_probs=145.7
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
++|||+|||+++++++|+++|+.||.|.++++++++ +++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999885 5789999999999999999999999999999999999998654
Q ss_pred CCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee
Q 014839 213 ATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 292 (417)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~ 292 (417)
... ...+.++|||+|||..+|+++|+++|+.| |.|.++.+.
T Consensus 80 ~~~-------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~ 120 (166)
T 3md3_A 80 QQS-------------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVM 120 (166)
T ss_dssp CCC-------------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEE
T ss_pred CCC-------------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEE
Confidence 321 12234789999999999999999999999 999999998
Q ss_pred cc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 293 RD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 293 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+++
T Consensus 121 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 121 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 66 68999999999999999999999999999999999863
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.1e-33 Score=245.47 Aligned_cols=169 Identities=22% Similarity=0.429 Sum_probs=153.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
.+.++|||+|||.++++++|+++|+.||+|.+|++++++ .+|||||+|.+.++|.+|++.|+|..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346899999999999999999999999999999998764 5799999999999999999999999999999999987
Q ss_pred ccCCCCC--------CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014839 121 YASSQRE--------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (417)
Q Consensus 121 ~~~~~~~--------~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (417)
....... .....++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6543221 23456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCC
Q 014839 193 DLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 193 ~l~g~~~~g~~i~v~~~~~~~ 213 (417)
.|+|..++|+.|.|.|+....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999998753
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1e-33 Score=249.41 Aligned_cols=175 Identities=25% Similarity=0.444 Sum_probs=148.8
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
..++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
........ ... ........++|||+|||.++|+++|+++|+.| |.|.+|+
T Consensus 107 ~~~~~~~~---------~~~-------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~ 156 (216)
T 2qfj_A 107 NIGQAQPI---------IDQ-------------------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSAT 156 (216)
T ss_dssp CCGGGHHH---------HHH-------------------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEE
T ss_pred Cccccchh---------hhh-------------------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEE
Confidence 43211000 000 00011234789999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 335 (417)
+.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|++++..
T Consensus 157 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 157 LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9876 78999999999999999999999999999999999987643
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.8e-33 Score=241.23 Aligned_cols=172 Identities=17% Similarity=0.354 Sum_probs=148.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
++.+.++|||+|||+++++++|+++|+.||+|.+|++++++. +|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 456788999999999999999999999999999999998753 6799999999999999996 59999999999999
Q ss_pred ecccCCCCC---CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014839 119 WAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (417)
Q Consensus 119 ~~~~~~~~~---~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (417)
++....... .....++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 987654322 234558999999999999999999999999999999999988999999999999999999999995 8
Q ss_pred CceeCCeEEEEEEccCCCCCC
Q 014839 196 GKWLGNRQIRCNWAAKGATSG 216 (417)
Q Consensus 196 g~~~~g~~i~v~~~~~~~~~~ 216 (417)
+..++|+.|.|.|+.++....
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CCEETTEECEEEECC------
T ss_pred CcEECCEEEEEEecCChhHhc
Confidence 999999999999998775543
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-32 Score=232.57 Aligned_cols=158 Identities=29% Similarity=0.484 Sum_probs=145.6
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
.++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEe
Q 014839 212 GATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 291 (417)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i 291 (417)
.... ...++|||+|||..+++++|+++|+.| |.|.++++
T Consensus 82 ~~~~---------------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i 120 (167)
T 1fxl_A 82 SSAS---------------------------------------IRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRI 120 (167)
T ss_dssp CCGG---------------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEE
T ss_pred Cccc---------------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEE
Confidence 3211 122679999999999999999999999 99999999
Q ss_pred ecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCee--eEEeec
Q 014839 292 QRD------KGFGFVRYSTHPEAALAIQMGNARILCGKP--IKCSWG 330 (417)
Q Consensus 292 ~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--l~v~~a 330 (417)
.++ +|+|||+|.+.++|.+|++.|||..|+|+. |+|+||
T Consensus 121 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 121 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 876 689999999999999999999999999975 899886
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.5e-33 Score=233.53 Aligned_cols=161 Identities=34% Similarity=0.543 Sum_probs=148.7
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
++++|||+|||+++++++|+++|+.||+|.+|++++++ ++|+|||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999876 24899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
+... ....++|||+|||.++++++|+++|+.||.|.+++++.+..+|+++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 81 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 81 PSSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp CCCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 5442 3456789999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eE--EEEEEc
Q 014839 202 RQ--IRCNWA 209 (417)
Q Consensus 202 ~~--i~v~~~ 209 (417)
+. |+|.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 75 888875
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1e-32 Score=239.08 Aligned_cols=173 Identities=25% Similarity=0.416 Sum_probs=147.5
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
......++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++ .++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeee
Confidence 345567899999999999999999999999999999999999999999999999999999999998 4999999999999
Q ss_pred EEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccce
Q 014839 207 NWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 286 (417)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i 286 (417)
.++........ +......++|||+|||.++|+++|+++|+.| |.|
T Consensus 87 ~~~~~~~~~~~---------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i 131 (196)
T 1l3k_A 87 KRAVSREDSQR---------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY--GKI 131 (196)
T ss_dssp EECCC--------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTT--SCE
T ss_pred ecccCcccccc---------------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcC--CCe
Confidence 99865432110 1112334789999999999999999999999 999
Q ss_pred EEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC
Q 014839 287 EDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 336 (417)
Q Consensus 287 ~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 336 (417)
.+|++.++ +|||||+|.+.++|.+|++. +|..|+|+.|.|.|+.++...
T Consensus 132 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99999876 68999999999999999987 899999999999999876543
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.1e-32 Score=231.62 Aligned_cols=163 Identities=22% Similarity=0.388 Sum_probs=146.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC------CCCEEEEEecCHHHHHHHHHHhcCCCCC---CceE
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIF---GQPI 115 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~------~~g~afV~F~~~~~A~~Al~~l~g~~i~---g~~l 115 (417)
+++++|||+|||+++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.|+|..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999999874 4579999999999999999999998876 6778
Q ss_pred EEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014839 116 KVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (417)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (417)
.+.++.... ......++|||+|||+++++++|+++|+.||.|.+++++++ .+|+++|||||+|.+.++|.+|++.|+
T Consensus 81 ~~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 81 QMKPADSEK--NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEEECGGGC--CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEccccccc--cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 888776544 33446789999999999999999999999999999999998 468999999999999999999999999
Q ss_pred CceeC---CeEEEEEEcc
Q 014839 196 GKWLG---NRQIRCNWAA 210 (417)
Q Consensus 196 g~~~~---g~~i~v~~~~ 210 (417)
|..+. |++|.|.|+.
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 98775 4999999973
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.6e-32 Score=231.42 Aligned_cols=160 Identities=23% Similarity=0.445 Sum_probs=145.8
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhcc----C-------CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCc
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~----G-------~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 113 (417)
+++++|||+|||+++++++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .++|..+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 357899999999999999999999999 6 66666553 46799999999999999999 7999999999
Q ss_pred eEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014839 114 PIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (417)
Q Consensus 114 ~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~ 193 (417)
.|+|.++.... .....++|||+|||+++++++|+++|++||.|.++++.+++.+|+++|||||+|.+.++|.+|++.
T Consensus 79 ~i~v~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 79 SLKIRRPHDYQ---PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp ECEEECCSSCC---CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeeecCCcccC---CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 99999876543 334578999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEcc
Q 014839 194 LNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 194 l~g~~~~g~~i~v~~~~ 210 (417)
|+|..++|++|.|.|+.
T Consensus 156 l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred cCCCEECCeEEEEEeCC
Confidence 99999999999999973
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.5e-32 Score=230.10 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=143.8
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTG--RSRGFGFVSFRNQEDAQSAINDLNGKWLG---NRQIR 205 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~~i~ 205 (417)
+.++|||+|||+++++++|+++|+.||+|.++++++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998887 89999999999999999999999998875 67788
Q ss_pred EEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccc
Q 014839 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 285 (417)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~ 285 (417)
+.++...... ....++|||+|||.++|+++|+++|+.| |.
T Consensus 82 ~~~~~~~~~~--------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~ 121 (175)
T 3nmr_A 82 MKPADSEKNN--------------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSF--GQ 121 (175)
T ss_dssp EEECGGGCCS--------------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGG--SC
T ss_pred Eccccccccc--------------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhC--CC
Confidence 8877543221 1133689999999999999999999999 99
Q ss_pred eEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeC---CeeeEEeecC
Q 014839 286 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC---GKPIKCSWGS 331 (417)
Q Consensus 286 i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 331 (417)
|.++++.++ +|+|||+|.+.++|.+|++.|||..+. |++|+|+||.
T Consensus 122 i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 122 IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999887 789999999999999999999999775 4999999973
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=5.6e-32 Score=234.89 Aligned_cols=166 Identities=22% Similarity=0.426 Sum_probs=147.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhcc----C-------CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCc
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~----G-------~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 113 (417)
+.+++|||+|||+++++++|+++|+.| | .|.++++ .+++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 457899999999999999999999999 4 4555544 456899999999999999999 7999999999
Q ss_pred eEEEEecccCCCC-----------------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccE
Q 014839 114 PIKVNWAYASSQR-----------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (417)
Q Consensus 114 ~l~v~~~~~~~~~-----------------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~ 176 (417)
.|+|.++...... ......++|||+|||+++++++|+++|+.||.|.++++.+++.+|+++||
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 9999998654221 11245689999999999999999999999999999999999889999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 014839 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~ 213 (417)
|||+|.+.++|.+|++.|+|..++|+.|+|.|+.++.
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999998764
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=3.5e-31 Score=242.84 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=151.8
Q ss_pred CCCCCceEEECCCCccCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLF----ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 203 (417)
+..+.++|||+|||+++++++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.++|..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45667899999999999999976 8999999999999884 6889999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCcCCCCCcc----------------c---hh---------cccCc--------------------c
Q 014839 204 IRCNWAAKGATSGDEKQSSDSKS----------------V---VE---------LTNGI--------------------S 235 (417)
Q Consensus 204 i~v~~~~~~~~~~~~~~~~~~~~----------------~---~~---------~~~~~--------------------~ 235 (417)
|+|.|+................. . .. ...+. .
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999976543110000000000 0 00 00000 0
Q ss_pred ccccccC------------------------cCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEe
Q 014839 236 VLFAEDG------------------------QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 291 (417)
Q Consensus 236 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i 291 (417)
....... ............++.++|||+|||..+|+++|+++|+.| |.|.+|++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~ 239 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEE
Confidence 0000000 000000111344567899999999999999999999999 99999999
Q ss_pred eccc-cEEEEEeCCHHHHHHHHHHhCCCeeC-CeeeEEeecCC
Q 014839 292 QRDK-GFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSK 332 (417)
Q Consensus 292 ~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 332 (417)
.+++ |+|||+|.+.++|.+|++.|||..|+ |+.|+|.|++.
T Consensus 240 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 9886 99999999999999999999999999 99999999873
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.4e-31 Score=237.42 Aligned_cols=196 Identities=18% Similarity=0.294 Sum_probs=152.3
Q ss_pred CCCCCCceEEECCCCc-cCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 127 EDTSGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
....+.++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.++|..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456678999999999 99999999999999999999999774 78999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCcc-
Q 014839 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG- 284 (417)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G- 284 (417)
|.++........................ .................++.++|||+|||..+++++|+++|+.| |
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~ 177 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNS----PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GG 177 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTC----SSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT--SC
T ss_pred EEEecCccccCccccccccccccccccC----cccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc--CC
Confidence 9999765332211110000000000000 00000000000111223456899999999999999999999999 9
Q ss_pred ceEEEEeec-cccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeeEEeecCCC
Q 014839 285 TIEDVRVQR-DKGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSKP 333 (417)
Q Consensus 285 ~i~~v~i~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~ 333 (417)
.|.+|++.+ ++|+|||+|.+.++|.+|++.|||..|+ |++|+|.|++++
T Consensus 178 ~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999955 7999999999999999999999999999 999999999864
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=9.5e-33 Score=232.99 Aligned_cols=159 Identities=26% Similarity=0.453 Sum_probs=144.3
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
+.++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999 4678999999998875
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEE
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 290 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~ 290 (417)
+... ..+..+|||+|||.++|+++|+++|+.| |.|.+++
T Consensus 80 ~~~~---------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~ 118 (167)
T 2cjk_A 80 PRDE---------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQ 118 (167)
T ss_dssp CHHH---------------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEE
T ss_pred chhh---------------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEE
Confidence 4210 0123689999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 291 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 291 i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
+.++ +|+|||+|.+.++|.+|++ ++|..|+|++|+|.|++++
T Consensus 119 i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 119 LMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9876 5899999999999999998 8999999999999999865
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=7.2e-32 Score=234.04 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=141.4
Q ss_pred CCCCeEEEcCCC-ccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 45 STCRSVYVGNIH-PQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 45 ~~~~~v~v~nLp-~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.++++|||+||| +++++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|..|++.|||..+.|+.|+|.++...
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 357899999999 89999999999999999999999876 4799999999999999999999999999999999998632
Q ss_pred CCCC----------------------------------CCCCCceEEECCCCccCCHHHHHHhhcCCCCe--eEEEEeec
Q 014839 124 SQRE----------------------------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTC--SDARVMWD 167 (417)
Q Consensus 124 ~~~~----------------------------------~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v--~~v~~~~d 167 (417)
.... ...+.++|||+|||+++++++|+++|+.||.| .+++++.+
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 2100 01245689999999999999999999999999 89998877
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe----EEEEEEc
Q 014839 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR----QIRCNWA 209 (417)
Q Consensus 168 ~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~----~i~v~~~ 209 (417)
+ +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 161 ~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 K--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp C--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred C--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 4 55679999999999999999999999999886 5666654
No 23
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=1.9e-31 Score=231.52 Aligned_cols=192 Identities=18% Similarity=0.291 Sum_probs=150.1
Q ss_pred CCceEEECCCCc-cCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 131 GHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 131 ~~~~l~v~nlp~-~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.++|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357899999999 99999999999999999999999774 789999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCcc-ceEE
Q 014839 210 AKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIED 288 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G-~i~~ 288 (417)
...................... ...................++.++|||+|||..+++++|+++|+.| | .|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~ 150 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYG----NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKG 150 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESS----CCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCE
T ss_pred cCCCcCCCCcCCcccccccccc----CCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc--CCCceE
Confidence 8654322111111000000000 0000000011111112233567899999999999999999999999 9 9999
Q ss_pred EEeec-cccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeeEEeecCCC
Q 014839 289 VRVQR-DKGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSKP 333 (417)
Q Consensus 289 v~i~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~ 333 (417)
+++.+ ++|+|||+|.+.++|.+|++.|||..|+ |++|+|.|++++
T Consensus 151 v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 151 FKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99965 6999999999999999999999999999 999999999764
No 24
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.3e-32 Score=232.21 Aligned_cols=161 Identities=24% Similarity=0.400 Sum_probs=147.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
++++|||+|||+++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 57899999999999999999999999999999998864 46899999999999999997 4678999999999876
Q ss_pred cCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
+.. .....++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++ +++..++|
T Consensus 80 ~~~---~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRD---EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHH---HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chh---hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 432 22345789999999999999999999999999999999998899999999999999999999999 89999999
Q ss_pred eEEEEEEccCC
Q 014839 202 RQIRCNWAAKG 212 (417)
Q Consensus 202 ~~i~v~~~~~~ 212 (417)
++|.|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999764
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.1e-31 Score=229.26 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=142.9
Q ss_pred CCCceEEECCCC-ccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 130 SGHFNVFVGDLS-PEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 130 ~~~~~l~v~nlp-~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
.++++|||+||| +++++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|++.|||..+.|++|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356789999999 89999999999999999999999865 379999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCCCCCccchhcccCcccccccc-CcCCCC---CCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCcc
Q 014839 209 AAKGATSGDEKQSSDSKSVVELTNGISVLFAED-GQEKSN---EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 284 (417)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G 284 (417)
+................... ...+... ...... .......++.++|||+|||+++|+++|+++|++| |
T Consensus 77 s~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~--G 148 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCS------YKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL--G 148 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBS------EEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH--T
T ss_pred ccCCccCCCcccccccCCcc------ccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc--C
Confidence 97544311100000000000 0000000 000000 0001123456889999999999999999999999 9
Q ss_pred ce--EEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe----eeEEeec
Q 014839 285 TI--EDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK----PIKCSWG 330 (417)
Q Consensus 285 ~i--~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~a 330 (417)
.| .++++..+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|+|+
T Consensus 149 ~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 149 VKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98 89999876 58999999999999999999999999886 5777664
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=8e-31 Score=232.57 Aligned_cols=164 Identities=21% Similarity=0.361 Sum_probs=146.5
Q ss_pred CCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 43 DASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~-~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
...++++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..|.|+.|+|.++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345688999999999 99999999999999999999998876 7899999999999999999999999999999999987
Q ss_pred cCCCC--------------------------------CCCCCCceEEECCCCccCCHHHHHHhhcCCC-CeeEEEEeecC
Q 014839 122 ASSQR--------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQ 168 (417)
Q Consensus 122 ~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~v~~v~~~~d~ 168 (417)
..... ....+.++|||+|||.++++++|+++|+.|| .|.+++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 54110 0123368899999999999999999999999 9999998743
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 014839 169 KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKG 212 (417)
Q Consensus 169 ~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~i~v~~~~~~ 212 (417)
.+|||||+|.+.++|.+|++.|+|..+. |++|+|.|+.+.
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3789999999999999999999999999 999999998763
No 27
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.2e-31 Score=228.12 Aligned_cols=164 Identities=23% Similarity=0.382 Sum_probs=143.6
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||+++++++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ ++|..+.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4566789999999999999999999999998876 345566788999999999999999999996 99999999999999
Q ss_pred EccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceE
Q 014839 208 WAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 287 (417)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~ 287 (417)
++...... ...+.++|||+|||.++|+++|+++|+.| |.|.
T Consensus 87 ~~~~~~~~-------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~ 127 (175)
T 1fje_B 87 KPKGRDSK-------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIR 127 (175)
T ss_dssp CCCCSSCS-------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEE
T ss_pred cCCCcccc-------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEE
Confidence 98764221 11234789999999999999999999999 9998
Q ss_pred EEEee--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 288 DVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 288 ~v~i~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
.+ .. +.+|+|||+|.+.++|.+|++.|||..|+|++|+|+|++++
T Consensus 128 ~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred Ee-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 88 21 23899999999999999999999999999999999999865
No 28
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.6e-30 Score=238.65 Aligned_cols=168 Identities=25% Similarity=0.405 Sum_probs=156.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
..++|||+|||+++++++|+++|+.||.|..|+++.++ ++|+|||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999998875 36899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCceEEECCCCccC-CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 122 ASSQREDTSGHFNVFVGDLSPEV-TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~-~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
+..........++|||+|||.++ ++++|+++|+.||.|.+++++.+. +|+++|+|||+|.+.++|.+|+..|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 88777777788999999999995 999999999999999999999885 8999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 014839 201 NRQIRCNWAAKGAT 214 (417)
Q Consensus 201 g~~i~v~~~~~~~~ 214 (417)
|++|.|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999987643
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=9e-31 Score=222.62 Aligned_cols=164 Identities=18% Similarity=0.345 Sum_probs=144.0
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEE---EecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i---~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
....+.++|||+|||+++++++|+++|+.||.+..+.+ ...+++|||||+|.+.++|.+|++ |+|..|.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 45667899999999999999999999999987655222 224578999999999999999994 99999999999999
Q ss_pred ecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014839 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (417)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (417)
++..... ......++|||+|||+++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|+|..
T Consensus 87 ~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 87 KPKGRDS-KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp CCCCSSC-STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred cCCCccc-cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 9876543 334567899999999999999999999999988766 4678999999999999999999999999999
Q ss_pred eCCeEEEEEEccCC
Q 014839 199 LGNRQIRCNWAAKG 212 (417)
Q Consensus 199 ~~g~~i~v~~~~~~ 212 (417)
++|+.|.|.|+.++
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999999764
No 30
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.3e-30 Score=223.69 Aligned_cols=177 Identities=14% Similarity=0.252 Sum_probs=143.3
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCC-----------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFP-----------TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G-----------~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 199 (417)
..++|||+|||+++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 457999999999999999999999994 4555444 466899999999999999999 7999999
Q ss_pred CCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhh
Q 014839 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279 (417)
Q Consensus 200 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 279 (417)
.|+.|.|.++.............. .............+.++|||+|||..+++++|+++|+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 136 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPS-------------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 136 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSS-------------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred cCceEEEeCCCCCCCCCCCcCCCc-------------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 999999999876533221100000 0000011112234568999999999999999999999
Q ss_pred hcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q 014839 280 ALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 335 (417)
Q Consensus 280 ~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 335 (417)
.| |.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++..
T Consensus 137 ~~--G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 137 SF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TB--SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred Hc--CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99 99999999876 78999999999999999999999999999999999987643
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.2e-30 Score=236.44 Aligned_cols=163 Identities=20% Similarity=0.401 Sum_probs=145.4
Q ss_pred CCCCCCeEEEcCCCccCCHHHHH----HHHhccCCcceEEEEec-CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~----~~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
+..++++|||+|||+++++++|+ ++|+.||.|.+|++.+. +++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45668999999999999999976 89999999999998864 35799999999999999999999999999999999
Q ss_pred EecccCCCC-----------------------------------------------------------------------
Q 014839 118 NWAYASSQR----------------------------------------------------------------------- 126 (417)
Q Consensus 118 ~~~~~~~~~----------------------------------------------------------------------- 126 (417)
.|+......
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654310
Q ss_pred -------------------------------------CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCC
Q 014839 127 -------------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK 169 (417)
Q Consensus 127 -------------------------------------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~ 169 (417)
....+.++|||+|||.++++++|+++|+.||.|.+++++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 122345789999999999999999999999999999999653
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 014839 170 TGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAA 210 (417)
Q Consensus 170 ~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~i~v~~~~ 210 (417)
+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999985
No 32
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.2e-30 Score=219.53 Aligned_cols=153 Identities=16% Similarity=0.347 Sum_probs=136.8
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVF----P-------TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~----G-------~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 199 (417)
+.++|||+|||+++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 66666655 45899999999999999999 7999999
Q ss_pred CCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhh
Q 014839 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 279 (417)
Q Consensus 200 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 279 (417)
.|++|.|.++...... ...++|||+|||.++|+++|+++|+
T Consensus 76 ~g~~i~v~~~~~~~~~---------------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~ 116 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL---------------------------------------PGAHKLFIGGLPNYLNDDQVKELLT 116 (172)
T ss_dssp TTEECEEECCSSCCCC---------------------------------------TTTTCEEEECCCTTCCHHHHHHHHH
T ss_pred cCceeeecCCcccCCC---------------------------------------CCCCEEEEEcCCCcCCHHHHHHHHH
Confidence 9999999987543211 1137899999999999999999999
Q ss_pred hcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 280 ALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 280 ~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
+| |.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|+||.
T Consensus 117 ~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 117 SF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TT--SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred hc--CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99 99999999877 6899999999999999999999999999999999973
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.2e-30 Score=226.48 Aligned_cols=161 Identities=22% Similarity=0.365 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCC
Q 014839 46 TCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (417)
Q Consensus 46 ~~~~v~v~nLp~-~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~ 124 (417)
.+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 368999999999 99999999999999999999998876 7899999999999999999999999999999999986432
Q ss_pred CC--------------------------------CCCCCCceEEECCCCccCCHHHHHHhhcCCC-CeeEEEEeecCCCC
Q 014839 125 QR--------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTG 171 (417)
Q Consensus 125 ~~--------------------------------~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~v~~v~~~~d~~~~ 171 (417)
.. ....+.++|||+|||.++++++|+++|+.|| .|.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---- 156 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 156 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----
Confidence 10 0113478899999999999999999999999 9999999754
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 014839 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKG 212 (417)
Q Consensus 172 ~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~i~v~~~~~~ 212 (417)
.+|+|||+|.+.++|.+|++.|+|..+. |++|+|.|+.++
T Consensus 157 -~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2799999999999999999999999999 999999998753
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.8e-30 Score=232.77 Aligned_cols=160 Identities=24% Similarity=0.385 Sum_probs=146.6
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 41 ~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
.......++|||+|||+++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|+..|+|..|.|+.|+|.++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34456678999999999999999999999999999999854 5789999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCcee
Q 014839 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWL 199 (417)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~ 199 (417)
.+ .++|||+|||+++++++|+++|+.||.|.++.++.| .+|+++|||||+|.+.++|.+|+..+ ++..+
T Consensus 94 ~~---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 94 TH---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CC---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cc---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 64 458999999999999999999999999999999999 68999999999999999999999999 55555
Q ss_pred C---CeEEEEEEccCC
Q 014839 200 G---NRQIRCNWAAKG 212 (417)
Q Consensus 200 ~---g~~i~v~~~~~~ 212 (417)
. +++|.|.++...
T Consensus 164 ~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSSCCBCEEEECCCE
T ss_pred ecCCCceEEEeecccc
Confidence 5 999999999764
No 35
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.8e-30 Score=238.08 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=147.8
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G-~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
...++|||+|||+++++++|+++|+.|| .|..|+++.++ ++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999 99999998765 6799999999999999999999999999999999998
Q ss_pred ccCCCCC----CCCCCceEEECCCCcc-CCHHHHHHhhcCCCCeeEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHh
Q 014839 121 YASSQRE----DTSGHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQK-TGRSRGFGFVSFRNQEDAQSAINDL 194 (417)
Q Consensus 121 ~~~~~~~----~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~v~~v~~~~d~~-~~~~~g~afV~f~~~~~A~~a~~~l 194 (417)
.+..... .....++|||+|||++ +++++|+++|+.||.|.+++++++.. ||+++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 7665432 3456789999999999 99999999999999999999999865 5999999999999999999999 89
Q ss_pred CCceeCCeEEEEEEccCC
Q 014839 195 NGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 195 ~g~~~~g~~i~v~~~~~~ 212 (417)
+|..+.|+.|.|.|+.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999865
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1e-28 Score=223.46 Aligned_cols=154 Identities=27% Similarity=0.440 Sum_probs=139.9
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||+++++++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|..|+..++|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345668999999999999999999999999999999874 47999999999999999999999999999999999
Q ss_pred EccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceE
Q 014839 208 WAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 287 (417)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~ 287 (417)
++.+. .+|||+|||..+|+++|+++|+.| |.|.
T Consensus 92 ~a~~~---------------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~--G~i~ 124 (261)
T 3sde_A 92 FATHG---------------------------------------------AALTVKNLSPVVSNELLEQAFSQF--GPVE 124 (261)
T ss_dssp ECCCS---------------------------------------------SEEEEESCCTTCCHHHHHHHHGGG--SCEE
T ss_pred ecccC---------------------------------------------CcccccCCCCCCCHHHHHHHHHhc--CCeE
Confidence 98531 579999999999999999999999 9999
Q ss_pred EEEeecc-----ccEEEEEeCCHHHHHHHHHHhC-CCeeC---CeeeEEeecCCCC
Q 014839 288 DVRVQRD-----KGFGFVRYSTHPEAALAIQMGN-ARILC---GKPIKCSWGSKPT 334 (417)
Q Consensus 288 ~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~-g~~~~---g~~l~v~~a~~~~ 334 (417)
+|.++.+ +|+|||+|.+.++|.+|+..|| |..+. |++|.|.++.+..
T Consensus 125 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 125 KAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999877 7999999999999999999995 44554 9999999987643
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=6.4e-23 Score=170.84 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=113.1
Q ss_pred eEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE-------eccc---CCCCCCCCCCceEEECCCCcc
Q 014839 76 GCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN-------WAYA---SSQREDTSGHFNVFVGDLSPE 143 (417)
Q Consensus 76 ~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~-------~~~~---~~~~~~~~~~~~l~v~nlp~~ 143 (417)
.++++.++ .+|||||+|.+.++|.+|++.+++....+..+.+. .... ..........++|||+|||++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 35666654 57999999999999999998887643333222222 2111 112233355689999999999
Q ss_pred CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 014839 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (417)
Q Consensus 144 ~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~ 214 (417)
+++++|+++|+.||.|.++++++|+.+|+++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.++..
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999987543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=3.7e-22 Score=166.20 Aligned_cols=146 Identities=20% Similarity=0.292 Sum_probs=108.2
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccc
Q 014839 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAE 240 (417)
Q Consensus 161 ~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
.++++.+.. +++|||||+|.+.++|++|++.+++....+..+.+.........
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 54 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV------------------------- 54 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-------------------------
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-------------------------
Confidence 456676643 68999999999999999999887764432222222211100000
Q ss_pred cCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHH
Q 014839 241 DGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~ 314 (417)
................++|||+|||+++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.
T Consensus 55 -~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 55 -TEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp -ECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred -cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 0000001111223445899999999999999999999999 99999999876 68999999999999999999
Q ss_pred hCCCeeCCeeeEEeecCCCCCC
Q 014839 315 GNARILCGKPIKCSWGSKPTPP 336 (417)
Q Consensus 315 l~g~~~~g~~l~v~~a~~~~~~ 336 (417)
|||..|+|++|+|.|+++..++
T Consensus 132 l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 132 MDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp STTEESSSSEEEEEEECCSSCC
T ss_pred hCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999875443
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=1.2e-22 Score=167.43 Aligned_cols=137 Identities=23% Similarity=0.339 Sum_probs=113.3
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCC
Q 014839 171 GRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNED 249 (417)
Q Consensus 171 ~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
...+|+++|+|.+.++|++|++.+ +|..++| .+.+.++.......... .......
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-----------------------~~~~~~~ 65 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-----------------------HHHHHHM 65 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-----------------------SSCCCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-----------------------ccccccc
Confidence 467899999999999999999999 9999999 99999875432110000 0000111
Q ss_pred CCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 250 APENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 250 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
......+.++|||+|||+++|+++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 12233455899999999999999999999999 99999999998 9999999999999999999999999999999999
Q ss_pred ecCCC
Q 014839 329 WGSKP 333 (417)
Q Consensus 329 ~a~~~ 333 (417)
|++++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99865
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.8e-22 Score=155.86 Aligned_cols=110 Identities=28% Similarity=0.510 Sum_probs=74.9
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
...+|||+|||+++++++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999985 4589999999999999999999999999999999999987
Q ss_pred CCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHH
Q 014839 211 KGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 273 (417)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 273 (417)
++....... ........+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~-------------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL-------------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-----------------------------------------------------------
T ss_pred Ccccccccc-------------------------------ccccCCCCceEeCCCCCCccccc
Confidence 643221110 01112235799999999999874
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=9.9e-22 Score=161.99 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=111.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHh-cCCCCCCceEEEEecccC-------------CCCCCCCCCceEEECCCCccCCHHHH
Q 014839 84 KSSYGFVDYFDRRSAALAIVTL-NGRHIFGQPIKVNWAYAS-------------SQREDTSGHFNVFVGDLSPEVTDATL 149 (417)
Q Consensus 84 ~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~~~~~~-------------~~~~~~~~~~~l~v~nlp~~~~e~~l 149 (417)
-+|+++|+|.+.++|.+|++.+ ||..+.| .+.+.++... .........++|||+|||+++++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 4789999999999999999999 9999999 9999987642 12334456789999999999999999
Q ss_pred HHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 150 FACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 150 ~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
+++|+.||.|.+++++++ ++|||||+|.+.++|.+|++.|+|..+.|++|+|.|+.++
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999866 5899999999999999999999999999999999999765
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.2e-21 Score=153.66 Aligned_cols=103 Identities=24% Similarity=0.460 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC--CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~--~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.+++|||+|||+++++++|+++|+.||.|.+|+|++++. +|||||+|.+.++|.+|++.|+|..|.|+.|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 356899999999999999999999999999999998764 689999999999999999999999999999999998765
Q ss_pred CCCCC-----CCCCceEEECCCCccCCHHH
Q 014839 124 SQRED-----TSGHFNVFVGDLSPEVTDAT 148 (417)
Q Consensus 124 ~~~~~-----~~~~~~l~v~nlp~~~~e~~ 148 (417)
..+.. ....++|||+|||+++|++-
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 44322 23345799999999998863
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=143.34 Aligned_cols=81 Identities=32% Similarity=0.514 Sum_probs=77.9
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
.+++|||+|||+++++++|+++|+.||.|.++++++|+.+|+++|||||+|.+.++|.+|++.|+|..+.|++|+|+|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 014839 211 K 211 (417)
Q Consensus 211 ~ 211 (417)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=139.57 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=77.8
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEc
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 209 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G-~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~i~v~~~ 209 (417)
+++|||+|||++++|++|+++|+.|| .|.+|++++|+.+|+++|||||+|.+.++|.+|++.+ ++..++|++|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999877 456799999999999
Q ss_pred cCCCCCC
Q 014839 210 AKGATSG 216 (417)
Q Consensus 210 ~~~~~~~ 216 (417)
.++....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8765443
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=139.66 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.+.++|||+|||+++++++|+++|++||.|.+++|++|+.|++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 014839 210 AKG 212 (417)
Q Consensus 210 ~~~ 212 (417)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 46
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=137.54 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=74.1
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC--CeeCCeeeEEeecC
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWGS 331 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~ 331 (417)
.++.++|||+|||+++|+++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|++ ..|.|++|+|.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 3455899999999999999999999999 9999999999999999999999999999998864 78999999999998
Q ss_pred CCCCC
Q 014839 332 KPTPP 336 (417)
Q Consensus 332 ~~~~~ 336 (417)
++...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 75443
No 47
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.1e-20 Score=149.57 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=84.0
Q ss_pred EEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEee
Q 014839 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW 166 (417)
Q Consensus 87 ~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~ 166 (417)
++|++|.+...+..|+..++|....|+. .+.+. ....+..+.++|||+|||+++++++|+++|+.||.|.++++++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~---~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG---RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSC---CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcC---CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 6788999999999999999987766653 12222 2233445578999999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q 014839 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215 (417)
Q Consensus 167 d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 215 (417)
++.+++++|||||+|.+.++|.+|++.|+|..+.|++|+|.|+.++...
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9889999999999999999999999999999999999999999876443
No 48
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=135.40 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=74.5
Q ss_pred CCCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCe--eCCeeeE
Q 014839 249 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARI--LCGKPIK 326 (417)
Q Consensus 249 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~ 326 (417)
......++.++|||+|||+++|+++|+++|++| |.|.+|+++++||+|||+|.+.++|.+|++.|++.. |+||+|+
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 344555677899999999999999999999999 999999999999999999999999999999999885 7899999
Q ss_pred EeecCCC
Q 014839 327 CSWGSKP 333 (417)
Q Consensus 327 v~~a~~~ 333 (417)
|.|++++
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999865
No 49
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=137.71 Aligned_cols=75 Identities=35% Similarity=0.498 Sum_probs=70.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
.+++|||+|||.++|+++|+++|++| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34789999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCC
Q 014839 330 GSK 332 (417)
Q Consensus 330 a~~ 332 (417)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 50
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3e-19 Score=128.55 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
...|+|+||++.+|+++|+++|.+| |+|.++++..+||||||+|.++++|.+|++.||+..++||+|+|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4679999999999999999999999 999999999999999999999999999999999999999999999984
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=136.45 Aligned_cols=82 Identities=18% Similarity=0.395 Sum_probs=75.9
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCC--eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPT--CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK----WLGNRQ 203 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~--v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~~~g~~ 203 (417)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.+|++||||||+|.+.++|.+|++.|+|. .++||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34468999999999999999999999995 679999999999999999999999999999999999986 589999
Q ss_pred EEEEEccC
Q 014839 204 IRCNWAAK 211 (417)
Q Consensus 204 i~v~~~~~ 211 (417)
|.|+|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=134.28 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=72.5
Q ss_pred CccceEEeeCCCc-cccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC--eeCCeeeEEeecC
Q 014839 255 PQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCSWGS 331 (417)
Q Consensus 255 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~ 331 (417)
.+.++|||+|||+ ++|+++|+++|++| |.|.+|.+++++|||||+|.+.++|.+|++.||+. .|.||+|+|.|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 3568999999999 99999999999999 99999999999999999999999999999999865 5999999999998
Q ss_pred CCC
Q 014839 332 KPT 334 (417)
Q Consensus 332 ~~~ 334 (417)
+..
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 644
No 53
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-18 Score=130.84 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHh--CCCeeCCeeeEEeec
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG--NARILCGKPIKCSWG 330 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~a 330 (417)
..++.++|||+|||+++++++|+++|++| |.|.+|.++++||||||+|.+.++|.+|++.| ++..|.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34456899999999999999999999999 99999999999999999999999999999977 567899999999999
Q ss_pred CCCCCC
Q 014839 331 SKPTPP 336 (417)
Q Consensus 331 ~~~~~~ 336 (417)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 54
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=2.4e-19 Score=140.61 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=93.7
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
+.++++|||+|||+++++++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4457899999999999999999999999999999998765 478999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCC
Q 014839 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT 158 (417)
Q Consensus 123 ~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~ 158 (417)
.... .+++...++++|.++|++||.
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 5432 577888999999999999975
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=130.49 Aligned_cols=83 Identities=57% Similarity=0.977 Sum_probs=77.2
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.+.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 014839 210 AKG 212 (417)
Q Consensus 210 ~~~ 212 (417)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.3e-18 Score=127.85 Aligned_cols=81 Identities=52% Similarity=0.897 Sum_probs=77.9
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
.+|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.++|..++|++|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 014839 213 A 213 (417)
Q Consensus 213 ~ 213 (417)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=2.4e-18 Score=134.95 Aligned_cols=92 Identities=54% Similarity=0.923 Sum_probs=84.9
Q ss_pred CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
...+..+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEccCCCCCC
Q 014839 205 RCNWAAKGATSG 216 (417)
Q Consensus 205 ~v~~~~~~~~~~ 216 (417)
+|.|+.++....
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999998765543
No 58
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=136.08 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=75.1
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC--CeeCCeeeEEeec
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWG 330 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a 330 (417)
..++.++|||+|||+++|+++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|++ ..|.|++|+|.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 44566899999999999999999999999 9999999999999999999999999999999874 6899999999999
Q ss_pred CCCCCC
Q 014839 331 SKPTPP 336 (417)
Q Consensus 331 ~~~~~~ 336 (417)
+++...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876544
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=132.24 Aligned_cols=89 Identities=27% Similarity=0.446 Sum_probs=83.1
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 014839 206 CNWAAKGAT 214 (417)
Q Consensus 206 v~~~~~~~~ 214 (417)
|.|+.++..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987644
No 60
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=134.50 Aligned_cols=93 Identities=28% Similarity=0.443 Sum_probs=82.5
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~ 127 (417)
++|||+|||+++++++|+++|+.||+|.+|++..+ ++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999888 78999999999999999999999999999999999997654322
Q ss_pred C-------CCCCceEEECCCC
Q 014839 128 D-------TSGHFNVFVGDLS 141 (417)
Q Consensus 128 ~-------~~~~~~l~v~nlp 141 (417)
. .....+|||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 1 1225689999997
No 61
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=130.53 Aligned_cols=87 Identities=33% Similarity=0.454 Sum_probs=81.6
Q ss_pred CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
.+....+.++|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|+|..+.|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC
Q 014839 205 RCNWAAK 211 (417)
Q Consensus 205 ~v~~~~~ 211 (417)
+|.|+..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 62
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=9e-19 Score=146.48 Aligned_cols=125 Identities=17% Similarity=0.304 Sum_probs=80.4
Q ss_pred EEecCHHHHHHHHHHhcCCCCC--CceEEEEecccC-----------------CCCCCCCCCceEEECCCCccCCHHHHH
Q 014839 90 VDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAYAS-----------------SQREDTSGHFNVFVGDLSPEVTDATLF 150 (417)
Q Consensus 90 V~F~~~~~A~~Al~~l~g~~i~--g~~l~v~~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~~e~~l~ 150 (417)
.+|.+.++|..++..|++.... |+.+...+.... .........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987765 665555543211 111223456789999999999999999
Q ss_pred HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 014839 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (417)
Q Consensus 151 ~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~ 214 (417)
++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999976543
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=131.26 Aligned_cols=87 Identities=25% Similarity=0.345 Sum_probs=81.6
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..+.++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014839 209 AAKGATS 215 (417)
Q Consensus 209 ~~~~~~~ 215 (417)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 64
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=131.54 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC--eeCCeeeEEeec
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCSWG 330 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a 330 (417)
..++.++|||+|||+++++++|+++|++| |.|.+|.++++||||||+|.+.++|.+|++.|++. .|+|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 44566899999999999999999999999 99999999999999999999999999999988765 599999999999
Q ss_pred CCCCC
Q 014839 331 SKPTP 335 (417)
Q Consensus 331 ~~~~~ 335 (417)
+++..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87543
No 65
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=6.5e-18 Score=132.43 Aligned_cols=83 Identities=35% Similarity=0.635 Sum_probs=76.0
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455899999999999999999999999 99999999876 689999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 014839 328 SWGSKPTPPGT 338 (417)
Q Consensus 328 ~~a~~~~~~~~ 338 (417)
.|++++.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99987765443
No 66
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=130.27 Aligned_cols=87 Identities=21% Similarity=0.454 Sum_probs=81.3
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||.++++++|+++|+.||.|.++++++|+.+++++|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EccCCCCC
Q 014839 208 WAAKGATS 215 (417)
Q Consensus 208 ~~~~~~~~ 215 (417)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.5e-18 Score=128.22 Aligned_cols=82 Identities=38% Similarity=0.546 Sum_probs=78.2
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..+.++|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.++|..+.|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 014839 209 AA 210 (417)
Q Consensus 209 ~~ 210 (417)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=130.18 Aligned_cols=86 Identities=19% Similarity=0.377 Sum_probs=80.4
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014839 207 NWAAKGA 213 (417)
Q Consensus 207 ~~~~~~~ 213 (417)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998754
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2e-18 Score=130.65 Aligned_cols=83 Identities=29% Similarity=0.608 Sum_probs=79.2
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
++++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 014839 211 KGA 213 (417)
Q Consensus 211 ~~~ 213 (417)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 70
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=129.77 Aligned_cols=85 Identities=33% Similarity=0.555 Sum_probs=80.7
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.+.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014839 210 AKGAT 214 (417)
Q Consensus 210 ~~~~~ 214 (417)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87644
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.7e-18 Score=134.60 Aligned_cols=88 Identities=30% Similarity=0.473 Sum_probs=82.1
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456689999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014839 207 NWAAKGAT 214 (417)
Q Consensus 207 ~~~~~~~~ 214 (417)
.|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987644
No 72
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=131.30 Aligned_cols=88 Identities=35% Similarity=0.478 Sum_probs=82.2
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
...+.++|||+|||+++++++|+++|+.||.|.++++++|+.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014839 208 WAAKGATS 215 (417)
Q Consensus 208 ~~~~~~~~ 215 (417)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=130.76 Aligned_cols=86 Identities=34% Similarity=0.694 Sum_probs=81.0
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v-~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
.+.++|||+|||+++++++|+++|+.||.|.++ ++++|+.+++++|||||+|.+.++|.+|++.|+|..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014839 209 AAKGATS 215 (417)
Q Consensus 209 ~~~~~~~ 215 (417)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=128.78 Aligned_cols=84 Identities=26% Similarity=0.416 Sum_probs=79.2
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcc
Q 014839 207 NWAA 210 (417)
Q Consensus 207 ~~~~ 210 (417)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 75
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=132.08 Aligned_cols=89 Identities=28% Similarity=0.406 Sum_probs=83.1
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.......++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 014839 206 CNWAAKGAT 214 (417)
Q Consensus 206 v~~~~~~~~ 214 (417)
|.++.++..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987654
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=130.93 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
..+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456899999999999999999999999 99999999886 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 014839 329 WGSKPTPPG 337 (417)
Q Consensus 329 ~a~~~~~~~ 337 (417)
|++...+..
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2do0_A 90 MDERALPKG 98 (114)
T ss_dssp ECSCCCCCS
T ss_pred EcccCCCCC
Confidence 998655443
No 77
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=132.21 Aligned_cols=89 Identities=27% Similarity=0.429 Sum_probs=82.7
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 014839 206 CNWAAKGAT 214 (417)
Q Consensus 206 v~~~~~~~~ 214 (417)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999987543
No 78
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=128.61 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCC--CCCceE
Q 014839 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH--IFGQPI 115 (417)
Q Consensus 38 ~~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~--i~g~~l 115 (417)
.++.....++++|||+|||+++++++|+++|++||.|.+|++++ .+|+|||+|.+.++|.+|++.|++.. |.|++|
T Consensus 12 ~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 12 YDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 44455566789999999999999999999999999999999975 56899999999999999999999876 789999
Q ss_pred EEEecccCC
Q 014839 116 KVNWAYASS 124 (417)
Q Consensus 116 ~v~~~~~~~ 124 (417)
+|.+++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999987543
No 79
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=132.11 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=82.8
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------CceeC
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN------GKWLG 200 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~------g~~~~ 200 (417)
....+.++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++.++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445667899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEEccCCCCC
Q 014839 201 NRQIRCNWAAKGATS 215 (417)
Q Consensus 201 g~~i~v~~~~~~~~~ 215 (417)
|+.|+|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876443
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=128.73 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeC--CeeeEEeecC
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILC--GKPIKCSWGS 331 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~ 331 (417)
.++.++|||+|||.++|+++|+++|+.| |.|.+|.+.+++|||||+|.+.++|.+|++.|||..|. |++|+|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3455899999999999999999999999 99999999999999999999999999999999999999 9999999998
Q ss_pred CCCC
Q 014839 332 KPTP 335 (417)
Q Consensus 332 ~~~~ 335 (417)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 81
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=132.68 Aligned_cols=87 Identities=30% Similarity=0.583 Sum_probs=81.9
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 014839 206 CNWAAKG 212 (417)
Q Consensus 206 v~~~~~~ 212 (417)
|.++.++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999765
No 82
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=132.55 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCccceEEeeCCCcc-ccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC--CeeCCeeeEEeec
Q 014839 254 NPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWG 330 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a 330 (417)
..+.++|||+|||++ +|+++|+++|++| |.|.+|.+.++||||||+|.+.++|.+|++.|++ ..|.||+|+|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 445689999999998 9999999999999 9999999999999999999999999999998864 5699999999999
Q ss_pred CCCCC
Q 014839 331 SKPTP 335 (417)
Q Consensus 331 ~~~~~ 335 (417)
++...
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 86544
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=132.85 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=80.8
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCC
Q 014839 207 NWAAKG 212 (417)
Q Consensus 207 ~~~~~~ 212 (417)
.|+.++
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 999765
No 84
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=129.49 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=75.7
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
...+.++|||+|||..+|+++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|+|++|+|.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34456899999999999999999999999 9999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 014839 333 PTP 335 (417)
Q Consensus 333 ~~~ 335 (417)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 85
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.2e-19 Score=132.63 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=72.9
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G--~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
.+|||+|||+++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.++|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 014839 211 KGA 213 (417)
Q Consensus 211 ~~~ 213 (417)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=129.47 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=79.8
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~--------v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (417)
.......++|||+|||+++++++|+++|+.||.|.+ +++++|+.+|+++|||||+|.+.++|.+|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345566789999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEcc
Q 014839 198 WLGNRQIRCNWAA 210 (417)
Q Consensus 198 ~~~g~~i~v~~~~ 210 (417)
.+.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=125.77 Aligned_cols=77 Identities=30% Similarity=0.614 Sum_probs=72.6
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHh-CCCeeCCeeeEEeecC
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSWGS 331 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~a~ 331 (417)
...+.++|||+|||.++++++|+++|+.| |.|.++++.+++|+|||+|.+.++|.+|++.| +|..++|++|+|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34455899999999999999999999999 99999999999999999999999999999998 9999999999999985
No 88
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=130.32 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCC--CCCCc
Q 014839 37 NLPPRFDASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQ 113 (417)
Q Consensus 37 ~~~~~~~~~~~~~v~v~nLp~-~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~--~i~g~ 113 (417)
+........++++|||+|||+ +++++||+++|++||.|.+|+++++ ++||||+|.+.++|..|++.|++. .|.|+
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 5 SSGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 334445566789999999999 9999999999999999999999865 479999999999999999999865 49999
Q ss_pred eEEEEecccCCC
Q 014839 114 PIKVNWAYASSQ 125 (417)
Q Consensus 114 ~l~v~~~~~~~~ 125 (417)
+|+|.++.....
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 1x4d_A 83 PVRVHLSQKYKR 94 (102)
T ss_dssp ECEEEEECCCTT
T ss_pred EEEEEECCCCCC
Confidence 999999986543
No 89
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=128.26 Aligned_cols=83 Identities=31% Similarity=0.570 Sum_probs=75.8
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34456899999999999999999999999 99999999885 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 014839 329 WGSKPTPPG 337 (417)
Q Consensus 329 ~a~~~~~~~ 337 (417)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 998765443
No 90
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=7.2e-18 Score=129.89 Aligned_cols=89 Identities=24% Similarity=0.399 Sum_probs=81.4
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---e
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN---R 202 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g---~ 202 (417)
.......++|||+|||+++++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.|+|..+.| +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3445567899999999999999999999999999999999996 89999999999999999999999999999988 9
Q ss_pred EEEEEEccCCCCC
Q 014839 203 QIRCNWAAKGATS 215 (417)
Q Consensus 203 ~i~v~~~~~~~~~ 215 (417)
.|.|.|+..+...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999876543
No 91
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-18 Score=130.98 Aligned_cols=80 Identities=38% Similarity=0.671 Sum_probs=75.3
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
...++|||+|||..+++++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|+|++|+|.|+++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 345799999999999999999999999 999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 014839 335 PP 336 (417)
Q Consensus 335 ~~ 336 (417)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=130.76 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC--CCCCCceEEEEec
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNWA 120 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~v~~~ 120 (417)
.+.+.++|||+|||++++|++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++ ..|.|++|+|.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4566889999999999999999999999999999999875 68999999999999999998864 7899999999999
Q ss_pred ccCCCCC
Q 014839 121 YASSQRE 127 (417)
Q Consensus 121 ~~~~~~~ 127 (417)
..+....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 7765443
No 93
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8e-18 Score=129.10 Aligned_cols=89 Identities=38% Similarity=0.762 Sum_probs=79.5
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 40 ~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
........++|||+|||+++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34456678999999999999999999999999999999999864 4689999999999999999999999999999999
Q ss_pred EecccCCCCCC
Q 014839 118 NWAYASSQRED 128 (417)
Q Consensus 118 ~~~~~~~~~~~ 128 (417)
.++.+...+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99987665443
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=8.7e-19 Score=133.53 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=78.3
Q ss_pred CCCceEEECCCCc------cCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 014839 130 SGHFNVFVGDLSP------EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN-R 202 (417)
Q Consensus 130 ~~~~~l~v~nlp~------~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g-~ 202 (417)
..+++|||+|||+ ++++++|+++|++||.|.++++++|+.||+++|||||+|.+.++|.+|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEccC
Q 014839 203 QIRCNWAAK 211 (417)
Q Consensus 203 ~i~v~~~~~ 211 (417)
.|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 95
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=127.58 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=73.1
Q ss_pred ccceEEeeCCCccccHHHHH----HhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 256 QYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~----~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
..++|||+|||.++++++|+ ++|++| |.|.+|+++.+ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44789999999999999999 999999 99999999977 8999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 014839 329 WGSKPTP 335 (417)
Q Consensus 329 ~a~~~~~ 335 (417)
|+++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9986543
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-18 Score=129.93 Aligned_cols=89 Identities=27% Similarity=0.434 Sum_probs=82.5
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD-QKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQ 203 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d-~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~ 203 (417)
.......++|||+|||+++++++|+++|+.||.|.+|+++++ +.+++++|||||+|.+.++|.+|++.| ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344566789999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred EEEEEccCCCC
Q 014839 204 IRCNWAAKGAT 214 (417)
Q Consensus 204 i~v~~~~~~~~ 214 (417)
|+|.|+.++..
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987644
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=127.89 Aligned_cols=86 Identities=14% Similarity=0.244 Sum_probs=75.6
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc--CCCCCCceEEE
Q 014839 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN--GRHIFGQPIKV 117 (417)
Q Consensus 40 ~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~--g~~i~g~~l~v 117 (417)
.+....++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|+ +..+.|++|+|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3455667899999999999999999999999999999988765 7899999999999999998774 67799999999
Q ss_pred EecccCCCCC
Q 014839 118 NWAYASSQRE 127 (417)
Q Consensus 118 ~~~~~~~~~~ 127 (417)
.|+..+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998765443
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.8e-18 Score=128.61 Aligned_cols=88 Identities=32% Similarity=0.562 Sum_probs=81.2
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
+....+.++|||+|||+++++++|+++|+.||.|.+++++.+ +++++|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 444567789999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 014839 206 CNWAAKGATS 215 (417)
Q Consensus 206 v~~~~~~~~~ 215 (417)
|.|+.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876543
No 99
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=130.57 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=69.4
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCcc-ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHh-CCCeeCCeeeEEee
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSW 329 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G-~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~ 329 (417)
++|||+|||+++|+++|+++|+.| | .|.+|+++++ ||||||+|.+.++|.+|++.| ++..|+|++|+|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~--G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH--GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH--TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh--CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 689999999999999999999999 8 8999999876 799999999999999999987 45689999999999
Q ss_pred cCCCCC
Q 014839 330 GSKPTP 335 (417)
Q Consensus 330 a~~~~~ 335 (417)
++++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987643
No 100
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=129.21 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=79.5
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK---TGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
.+.++|||+|||+++++++|+++|+.||.|.++++++++. +++++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 014839 207 NWAAKGATS 215 (417)
Q Consensus 207 ~~~~~~~~~ 215 (417)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876443
No 101
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.7e-18 Score=135.25 Aligned_cols=85 Identities=33% Similarity=0.514 Sum_probs=79.3
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
..+..+.++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.|+|..++|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc
Q 014839 206 CNWAA 210 (417)
Q Consensus 206 v~~~~ 210 (417)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 102
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=130.53 Aligned_cols=88 Identities=40% Similarity=0.585 Sum_probs=82.1
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
...+.++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014839 208 WAAKGATS 215 (417)
Q Consensus 208 ~~~~~~~~ 215 (417)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 103
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.5e-18 Score=139.74 Aligned_cols=119 Identities=23% Similarity=0.368 Sum_probs=75.0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCC
Q 014839 176 FGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNP 255 (417)
Q Consensus 176 ~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
+.|++|.+...+..|+..++|....|+.- +.+. ..+....
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~---------------------------------------~~~~~~~ 45 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG---------------------------------------RPPPDVE 45 (135)
T ss_dssp ------------------------------CCSC---------------------------------------CSCSSGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC---------------------------------------CCCCCCC
Confidence 57788888888888888887765544321 0000 0112223
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
+.++|||+|||.++|+++|+++|+.| |.|..|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44789999999999999999999999 99999999865 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014839 330 GSKPTPP 336 (417)
Q Consensus 330 a~~~~~~ 336 (417)
+++..++
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 104
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=131.37 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=71.9
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
++.++|||+|||+++++++|+++|++| |.|.+|+|++| +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345799999999999999999999999 99999999866 6899999999999999999999999999999999
Q ss_pred ecCCC
Q 014839 329 WGSKP 333 (417)
Q Consensus 329 ~a~~~ 333 (417)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98654
No 105
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.7e-18 Score=134.60 Aligned_cols=104 Identities=15% Similarity=0.247 Sum_probs=92.9
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
+....++|||+|||+++++++|+++|+.||.|.++.++++ +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999965 5669999999999999999999999999999999999
Q ss_pred EccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCccceEEeeCCCccccHHHHHHhhhhc
Q 014839 208 WAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 281 (417)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 281 (417)
|+.+... -.+++...++++|.++|++|
T Consensus 81 ~a~~~~~-----------------------------------------------~~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 81 YYNANRA-----------------------------------------------FQKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp ECCHHHH-----------------------------------------------TTTSCHHHHHHHHHHHHHHH
T ss_pred EecCChh-----------------------------------------------hhhhhHhHhHHHHHHHHHHh
Confidence 9865311 14778889999999999999
No 106
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=132.11 Aligned_cols=85 Identities=33% Similarity=0.512 Sum_probs=79.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014839 209 AAKGAT 214 (417)
Q Consensus 209 ~~~~~~ 214 (417)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986543
No 107
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=127.82 Aligned_cols=87 Identities=23% Similarity=0.442 Sum_probs=80.3
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.|| |.+|++++++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34455678999999999999999999999997 999999999999999999999999999999999 7999999999999
Q ss_pred EEEccCCCC
Q 014839 206 CNWAAKGAT 214 (417)
Q Consensus 206 v~~~~~~~~ 214 (417)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987644
No 108
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=126.74 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=75.1
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
.....++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999 99999999987 7999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 014839 329 WGSKPTP 335 (417)
Q Consensus 329 ~a~~~~~ 335 (417)
|++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9987644
No 109
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=129.80 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=69.2
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCC----eeCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNAR----ILCG 322 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G--~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~----~~~g 322 (417)
..-.+|||+|||+++|+++|+++|++| | .|.+|++++| ||||||+|.+.++|.+|++.|||. .|+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~--G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPY--ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTT--CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhh--CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 344789999999999999999999999 8 4678999876 799999999999999999999997 4899
Q ss_pred eeeEEeecCC
Q 014839 323 KPIKCSWGSK 332 (417)
Q Consensus 323 ~~l~v~~a~~ 332 (417)
|+|+|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 110
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=128.41 Aligned_cols=83 Identities=27% Similarity=0.431 Sum_probs=75.5
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
...+.++|||+|||.++++++|+++|+.| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456899999999999999999999999 99999999876 58999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 014839 327 CSWGSKPTPPG 337 (417)
Q Consensus 327 v~~a~~~~~~~ 337 (417)
|.|++++....
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99998765443
No 111
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=130.86 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=82.6
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~--------~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (417)
..+....++|||+|||+++++++|+++|+.||.|. .+++++|+.+++++|||||+|.+.++|.+|++.|+|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556778999999999999999999999999999 6999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCCC
Q 014839 198 WLGNRQIRCNWAAKGAT 214 (417)
Q Consensus 198 ~~~g~~i~v~~~~~~~~ 214 (417)
.+.|+.|+|.++.++..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999987654
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=124.68 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=73.2
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
..+.++|||+|||.++++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 3455899999999999999999999999 999999998 789999999999999999999999999999999999876
Q ss_pred CCC
Q 014839 334 TPP 336 (417)
Q Consensus 334 ~~~ 336 (417)
...
T Consensus 81 ~~~ 83 (90)
T 2dnq_A 81 SKA 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 113
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=127.51 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCC--CCCCceEEEEe
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQPIKVNW 119 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~~ 119 (417)
....++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++. .|.|++|+|.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34556789999999999999999999999999999998764 789999999999999999988764 48999999999
Q ss_pred cccCCCC
Q 014839 120 AYASSQR 126 (417)
Q Consensus 120 ~~~~~~~ 126 (417)
+..+...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9765543
No 114
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=6.2e-18 Score=131.40 Aligned_cols=87 Identities=20% Similarity=0.397 Sum_probs=81.3
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014839 207 NWAAKGA 213 (417)
Q Consensus 207 ~~~~~~~ 213 (417)
.|+.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997653
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=7.5e-18 Score=125.00 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=76.2
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
...+.++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999997 68889999999998
Q ss_pred Ec
Q 014839 208 WA 209 (417)
Q Consensus 208 ~~ 209 (417)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 116
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=128.71 Aligned_cols=90 Identities=23% Similarity=0.433 Sum_probs=80.3
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec--CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 39 ~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~--~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
..+....+.++|||+|||+++++++|+++|+.||.|.+|+++.+ +.++||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34455667889999999999999999999999999999999987 4568999999999999999999999999999999
Q ss_pred EEecccCCCCCC
Q 014839 117 VNWAYASSQRED 128 (417)
Q Consensus 117 v~~~~~~~~~~~ 128 (417)
|.++.++..+..
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2d9p_A 87 VALAQRKEERQS 98 (103)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEecccccCCC
Confidence 999987665443
No 117
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=126.85 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=74.2
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
.+.++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999876 5999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 014839 329 WGSKPTPP 336 (417)
Q Consensus 329 ~a~~~~~~ 336 (417)
|++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876544
No 118
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=128.22 Aligned_cols=88 Identities=28% Similarity=0.494 Sum_probs=80.7
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
.....+.++|||+|||+++++++|+++|+.|| |.+|++++++.+ ++++|||||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34455678999999999999999999999999 999999999887 999999999999999999999 899999999999
Q ss_pred EEEEccCCCCC
Q 014839 205 RCNWAAKGATS 215 (417)
Q Consensus 205 ~v~~~~~~~~~ 215 (417)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 119
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=125.95 Aligned_cols=80 Identities=28% Similarity=0.493 Sum_probs=74.2
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
+.++|||+|||.++++++|+++|+.| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45799999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 014839 330 GSKPTPPG 337 (417)
Q Consensus 330 a~~~~~~~ 337 (417)
++++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98765543
No 120
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.6e-17 Score=130.17 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=74.8
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
...++.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344456899999999999999999999999 99999999876 4899999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 014839 326 KCSWGSKPTP 335 (417)
Q Consensus 326 ~v~~a~~~~~ 335 (417)
+|.|++++..
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999987654
No 121
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=127.19 Aligned_cols=89 Identities=25% Similarity=0.311 Sum_probs=79.5
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 39 ~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
.......+.++|||+|||+++++++|+++|+.||+|.+|+++.++ .++||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334456678999999999999999999999999999999999875 478999999999999999999999999999999
Q ss_pred EEecccCCCCC
Q 014839 117 VNWAYASSQRE 127 (417)
Q Consensus 117 v~~~~~~~~~~ 127 (417)
|.++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998765443
No 122
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=130.47 Aligned_cols=87 Identities=34% Similarity=0.741 Sum_probs=80.9
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcC-CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSV-FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIR 205 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~-~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g~~i~ 205 (417)
+..+.++|||+|||+++++++|+++|+. ||.|.++++++|+ +++++|||||+|.+.++|.+|++.+++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999997 99999999999999999999999999999 9999999
Q ss_pred EEEccCCCCC
Q 014839 206 CNWAAKGATS 215 (417)
Q Consensus 206 v~~~~~~~~~ 215 (417)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999766543
No 123
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=4.6e-18 Score=135.61 Aligned_cols=88 Identities=33% Similarity=0.469 Sum_probs=82.2
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.|+|..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC
Q 014839 206 CNWAAKGA 213 (417)
Q Consensus 206 v~~~~~~~ 213 (417)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997653
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=128.84 Aligned_cols=84 Identities=21% Similarity=0.432 Sum_probs=79.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCee-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE----
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCS-DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ---- 203 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~-~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~---- 203 (417)
....++|||+|||+++++++|+++|+.||.|. ++++++|+.+++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 014839 204 IRCNWAAKG 212 (417)
Q Consensus 204 i~v~~~~~~ 212 (417)
|+|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999765
No 125
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=7.1e-18 Score=130.14 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=82.4
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCe
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL---GNR 202 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~---~g~ 202 (417)
.......++|||+|||.++++++|+++|+.||.|.+|+++.|+.+++++|||||+|.+.++|.+|++.|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999987 899
Q ss_pred EEEEEEccCCCC
Q 014839 203 QIRCNWAAKGAT 214 (417)
Q Consensus 203 ~i~v~~~~~~~~ 214 (417)
+|+|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987644
No 126
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-17 Score=127.19 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=74.1
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC-----eeeEEee
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG-----KPIKCSW 329 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~l~v~~ 329 (417)
...++|||+|||+++|+++|+++|+.| |.|.+|.++.+ |||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 345899999999999999999999999 99999999998 999999999999999999999999999 9999999
Q ss_pred cCCCCCC
Q 014839 330 GSKPTPP 336 (417)
Q Consensus 330 a~~~~~~ 336 (417)
++++...
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9876543
No 127
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=130.96 Aligned_cols=89 Identities=34% Similarity=0.515 Sum_probs=81.6
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.......++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEEccCCCCC
Q 014839 206 CNWAAKGATS 215 (417)
Q Consensus 206 v~~~~~~~~~ 215 (417)
|+++......
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765443
No 128
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=3.1e-17 Score=125.72 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=72.7
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
.+.++|||+|||.++|+++|+++|+.| |.|.+|++. ++||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 445889999999999999999999999 999999998 4599999999999999999999999999999999998765
Q ss_pred CCC
Q 014839 335 PPG 337 (417)
Q Consensus 335 ~~~ 337 (417)
...
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=129.40 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc--CCCCCCceEEEEe
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN--GRHIFGQPIKVNW 119 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~--g~~i~g~~l~v~~ 119 (417)
....++++|||+|||++++|++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.++ +..|.|++|+|.+
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34566899999999999999999999999999999999876 6899999999999999999887 4689999999999
Q ss_pred cccCCCCCCC
Q 014839 120 AYASSQREDT 129 (417)
Q Consensus 120 ~~~~~~~~~~ 129 (417)
+..+......
T Consensus 104 a~~k~~~~~~ 113 (119)
T 2ad9_A 104 SNHKELKTDS 113 (119)
T ss_dssp CSSSSCCCCC
T ss_pred ccCCCCCccc
Confidence 9876654433
No 130
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=128.24 Aligned_cols=88 Identities=31% Similarity=0.572 Sum_probs=79.0
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCce
Q 014839 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (417)
Q Consensus 39 ~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 114 (417)
.+.....+.++|||+|||+++++++|+++|+.||+|..|+++.++ .+|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344556678999999999999999999999999999999998865 4689999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q 014839 115 IKVNWAYASSQR 126 (417)
Q Consensus 115 l~v~~~~~~~~~ 126 (417)
|+|.++.+....
T Consensus 87 l~v~~a~~~~~~ 98 (105)
T 1x5u_A 87 IRVNKASAHNKN 98 (105)
T ss_dssp CEEEETTTTSCC
T ss_pred EEEEECCCCCcC
Confidence 999999876543
No 131
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.4e-17 Score=126.93 Aligned_cols=86 Identities=19% Similarity=0.373 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CCEEEEEecCHHHHHHHHHHhcCCCCCC---ceE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFG---QPI 115 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~Al~~l~g~~i~g---~~l 115 (417)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3445689999999999999999999999999999999998753 6899999999999999999999999998 999
Q ss_pred EEEecccCCCCC
Q 014839 116 KVNWAYASSQRE 127 (417)
Q Consensus 116 ~v~~~~~~~~~~ 127 (417)
+|.++.+...+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998766543
No 132
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-17 Score=127.13 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=73.9
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..+.++|||+|||.++|+++|+++|+.| |.|..|.+..+ +|||||+|.+.++|.+|++.||+..|+|++|+|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3455899999999999999999999999 99999999876 689999999999999999999999999999999999
Q ss_pred CCCCC
Q 014839 331 SKPTP 335 (417)
Q Consensus 331 ~~~~~ 335 (417)
++...
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87644
No 133
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=128.12 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 014839 208 WAAKG 212 (417)
Q Consensus 208 ~~~~~ 212 (417)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 134
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=126.94 Aligned_cols=84 Identities=29% Similarity=0.462 Sum_probs=77.8
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
......++|||+|||+++++++|+++|+.||.|.++++++++. ++++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3445678999999999999999999999999999999999964 899999999999999999999999999999999999
Q ss_pred EEccC
Q 014839 207 NWAAK 211 (417)
Q Consensus 207 ~~~~~ 211 (417)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 135
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=126.22 Aligned_cols=79 Identities=23% Similarity=0.435 Sum_probs=72.7
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 44789999999999999999999999 99999999853 57999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 014839 327 CSWGSKPTPP 336 (417)
Q Consensus 327 v~~a~~~~~~ 336 (417)
|.|+++...+
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876544
No 136
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=5.3e-19 Score=140.66 Aligned_cols=81 Identities=19% Similarity=0.368 Sum_probs=77.3
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
..++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|+ .++|..+.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4578999999999999999999999999999999999999999999999999999999999 699999999999999997
Q ss_pred CC
Q 014839 211 KG 212 (417)
Q Consensus 211 ~~ 212 (417)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 137
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=135.00 Aligned_cols=88 Identities=28% Similarity=0.463 Sum_probs=82.2
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014839 208 WAAKGATS 215 (417)
Q Consensus 208 ~~~~~~~~ 215 (417)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 138
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.2e-17 Score=122.67 Aligned_cols=75 Identities=25% Similarity=0.533 Sum_probs=71.3
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
.+|||+|||.++++++|+++|+.| |.|.++.+.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 689999999999999999999999 99999999877 7999999999999999999999999999999999998
Q ss_pred CCC
Q 014839 332 KPT 334 (417)
Q Consensus 332 ~~~ 334 (417)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 139
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=128.27 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=73.0
Q ss_pred CccceEEe--eCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee-----CCeeeEE
Q 014839 255 PQYTTVYV--GNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL-----CGKPIKC 327 (417)
Q Consensus 255 ~~~~~l~V--~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~g~~l~v 327 (417)
.+.++||| +||+.++++++|+++|++| |.|.+|.++.+||||||+|.+.++|.+|++.|||++| .|++|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34578999 6799999999999999999 9999999999999999999999999999999999998 7999999
Q ss_pred eecCCCCC
Q 014839 328 SWGSKPTP 335 (417)
Q Consensus 328 ~~a~~~~~ 335 (417)
.|++....
T Consensus 101 ~~a~~~p~ 108 (114)
T 2cq2_A 101 NFVEKVQW 108 (114)
T ss_dssp EEESCCCC
T ss_pred EecccCcc
Confidence 99986543
No 140
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-17 Score=125.85 Aligned_cols=89 Identities=25% Similarity=0.356 Sum_probs=81.1
Q ss_pred CCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
......+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++ ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34455667899999999999999999999999999999999999999999999999999999999999 5789999999
Q ss_pred EEEEccCCCCC
Q 014839 205 RCNWAAKGATS 215 (417)
Q Consensus 205 ~v~~~~~~~~~ 215 (417)
.|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999876543
No 141
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=127.57 Aligned_cols=88 Identities=20% Similarity=0.374 Sum_probs=78.4
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 40 ~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
......+.++|||+|||+++++++|+++|+.||.|..|++..++ +++||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33445678899999999999999999999999999999997765 47899999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 014839 119 WAYASSQRE 127 (417)
Q Consensus 119 ~~~~~~~~~ 127 (417)
++.+.....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4a_A 95 FPRSGRGTG 103 (109)
T ss_dssp CCCCCCCCC
T ss_pred EcccCCCCC
Confidence 998765443
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=124.39 Aligned_cols=76 Identities=36% Similarity=0.639 Sum_probs=70.2
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCC
Q 014839 330 GSKP 333 (417)
Q Consensus 330 a~~~ 333 (417)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9864
No 143
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=127.40 Aligned_cols=82 Identities=21% Similarity=0.465 Sum_probs=75.2
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHh-CCCeeCCee
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMG-NARILCGKP 324 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~ 324 (417)
.....++|||+|||..+++++|+++|+.| |.|..|++.++ +|||||+|.+.++|.+|++.| ||..|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34455899999999999999999999999 99999999877 799999999999999999999 999999999
Q ss_pred eEEeecCCCCCC
Q 014839 325 IKCSWGSKPTPP 336 (417)
Q Consensus 325 l~v~~a~~~~~~ 336 (417)
|+|.|+++....
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 144
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=125.78 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=73.7
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
..+.++|||+|||.++|+++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455889999999999999999999999 99999999876 4999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 014839 329 WGSKPTP 335 (417)
Q Consensus 329 ~a~~~~~ 335 (417)
|++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987543
No 145
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-17 Score=127.70 Aligned_cols=83 Identities=27% Similarity=0.495 Sum_probs=74.7
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
....+.++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|++ .|.|++|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 344556899999999999999999999999 99999999876 68999999999999999999998 8999999
Q ss_pred EEeecCCCCCCC
Q 014839 326 KCSWGSKPTPPG 337 (417)
Q Consensus 326 ~v~~a~~~~~~~ 337 (417)
+|.|+++...+.
T Consensus 89 ~V~~a~~~~~~~ 100 (116)
T 2cqd_A 89 NVNLAYLGAKPR 100 (116)
T ss_dssp EEEESTTTCCCC
T ss_pred EEEEcccCCCcc
Confidence 999998755443
No 146
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=6.2e-18 Score=130.34 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=70.4
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCcc-ceEEEEeec--cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQR--DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G-~i~~v~i~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
..++|||+|||+++++++|+++|+.| | .|..+.+.. .+|||||+|.+.++|.+|++.|||..|+|+.|+|.+++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~--G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN--SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH--TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh--CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44799999999999999999999999 9 899999963 489999999999999999999999999999999999875
Q ss_pred CC
Q 014839 333 PT 334 (417)
Q Consensus 333 ~~ 334 (417)
+.
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 43
No 147
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.5e-17 Score=128.56 Aligned_cols=84 Identities=29% Similarity=0.371 Sum_probs=78.7
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.||.|.+++++.++ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445677899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred EEEcc
Q 014839 206 CNWAA 210 (417)
Q Consensus 206 v~~~~ 210 (417)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99975
No 148
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.3e-17 Score=123.12 Aligned_cols=75 Identities=33% Similarity=0.561 Sum_probs=70.6
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
.+.++|||+|||.++++++|+++|+.| |.|.++.++++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999765 7999999999999999999999999999999999
Q ss_pred ecC
Q 014839 329 WGS 331 (417)
Q Consensus 329 ~a~ 331 (417)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 149
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=6e-18 Score=129.31 Aligned_cols=76 Identities=32% Similarity=0.545 Sum_probs=72.7
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
..++|||+|||.++++++|+++|+.| |.|.++++.+++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 34799999999999999999999999 99999999999999999999999999999999999999999999999763
No 150
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=129.31 Aligned_cols=88 Identities=27% Similarity=0.381 Sum_probs=81.7
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred EEccCCCCC
Q 014839 207 NWAAKGATS 215 (417)
Q Consensus 207 ~~~~~~~~~ 215 (417)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 151
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=124.81 Aligned_cols=77 Identities=32% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
..++.++|||+|||.++++++|+++|+.| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..|+|++|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456899999999999999999999999 99999999875 68999999999999999999999999999999
Q ss_pred EeecC
Q 014839 327 CSWGS 331 (417)
Q Consensus 327 v~~a~ 331 (417)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 152
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=125.20 Aligned_cols=80 Identities=18% Similarity=0.424 Sum_probs=73.2
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||.++++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++ ||+..|+|++|+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3455899999999999999999999999 99999999875 7999999999999999998 8999999999999
Q ss_pred eecCCCCCC
Q 014839 328 SWGSKPTPP 336 (417)
Q Consensus 328 ~~a~~~~~~ 336 (417)
.|++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876543
No 153
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=124.35 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
.....+++|||+|||+++++++|+++|+.||.|. +.++.++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3455678999999999999999999999999997 788888889999999999999999999999999999999999987
Q ss_pred cCC
Q 014839 122 ASS 124 (417)
Q Consensus 122 ~~~ 124 (417)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 154
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=129.03 Aligned_cols=87 Identities=30% Similarity=0.386 Sum_probs=76.4
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+ +..++|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999965 69999999999
Q ss_pred EEccCCCC
Q 014839 207 NWAAKGAT 214 (417)
Q Consensus 207 ~~~~~~~~ 214 (417)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.31 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=77.0
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR-SRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~-~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
..++|||+|||+++++++|+++|+.||.|.++.++.++.++. ++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999977766 8999999999999999999999999999999999999
Q ss_pred cCC
Q 014839 210 AKG 212 (417)
Q Consensus 210 ~~~ 212 (417)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 156
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=129.29 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
......++|||+|||+++++++|+++|+.||+|.+|++++|+. |+++|||||+|.+.++|..|+. +++..+.|+.|.|
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999976 9999999999999999999999 8999999999999
Q ss_pred EEccC
Q 014839 207 NWAAK 211 (417)
Q Consensus 207 ~~~~~ 211 (417)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98754
No 157
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=127.38 Aligned_cols=80 Identities=31% Similarity=0.500 Sum_probs=74.0
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
.+.++|||+|||.++++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355899999999999999999999999 99999999776 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 014839 329 WGSKPTPP 336 (417)
Q Consensus 329 ~a~~~~~~ 336 (417)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 158
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=125.94 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
...+.++|||+|||+++++++|+++|+.||+|..|++++++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35567899999999999999999999999999999998864 46899999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 014839 119 WAYASSQRE 127 (417)
Q Consensus 119 ~~~~~~~~~ 127 (417)
++.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998766543
No 159
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.2e-17 Score=125.39 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=74.0
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
..+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3455899999999999999999999999 99999999874 79999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014839 330 GSKPTP 335 (417)
Q Consensus 330 a~~~~~ 335 (417)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 160
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.2e-17 Score=127.05 Aligned_cols=86 Identities=28% Similarity=0.366 Sum_probs=79.5
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
......++|||+|||+++++++|+++|+.||.|.++++++++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567899999999999999999999999999999999996 6999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014839 207 NWAAKGA 213 (417)
Q Consensus 207 ~~~~~~~ 213 (417)
+++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9987543
No 161
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=138.72 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G--~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..++|||+|||+++++++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014839 209 AAKG 212 (417)
Q Consensus 209 ~~~~ 212 (417)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 162
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.4e-17 Score=124.16 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=76.6
Q ss_pred CceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 132 ~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
.++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|+ .++|..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 7999999999999999876
Q ss_pred C
Q 014839 212 G 212 (417)
Q Consensus 212 ~ 212 (417)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 163
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=127.10 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=74.2
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
...+.++|||+|||.++++++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|+|++|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 33455899999999999999999999999 99999999875 68999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 014839 327 CSWGSKPTP 335 (417)
Q Consensus 327 v~~a~~~~~ 335 (417)
|.|+++..+
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999986543
No 164
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-18 Score=126.87 Aligned_cols=81 Identities=22% Similarity=0.423 Sum_probs=76.7
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
.+.++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|+|..+.|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 014839 210 A 210 (417)
Q Consensus 210 ~ 210 (417)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=124.45 Aligned_cols=79 Identities=32% Similarity=0.344 Sum_probs=72.9
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
...++.++|||+|||.++++++|+++|+.| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..|+|++|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344566899999999999999999999999 99999999865 6899999999999999999999999999999
Q ss_pred EEeecCC
Q 014839 326 KCSWGSK 332 (417)
Q Consensus 326 ~v~~a~~ 332 (417)
+|.|+++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 166
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=122.48 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=72.6
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
..+.++|||+|||.++++++|+++|+.| |.|.+|.+.++ ||||+|.+.++|.+|++.|||..|+|+.|+|.|++++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 3455899999999999999999999999 99999999855 9999999999999999999999999999999999876
Q ss_pred CCC
Q 014839 334 TPP 336 (417)
Q Consensus 334 ~~~ 336 (417)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 167
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=124.76 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=75.8
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 40 ~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
......+.++|||+|||+++++++|+++|++||+|..|++.+ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 334456778999999999999999999999999999999875 478999999999999999999999999999999999
Q ss_pred cccCCC
Q 014839 120 AYASSQ 125 (417)
Q Consensus 120 ~~~~~~ 125 (417)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 977554
No 168
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=122.29 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
..+.++|||+|||+++++++|+++|+.||+|.+|++. ++||||+|.+.++|.+|++.|||..|.|+.|+|.++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4567899999999999999999999999999999997 689999999999999999999999999999999999876
Q ss_pred CCCC
Q 014839 124 SQRE 127 (417)
Q Consensus 124 ~~~~ 127 (417)
....
T Consensus 81 ~~~~ 84 (90)
T 2dnq_A 81 SKAS 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 169
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=7.1e-18 Score=127.37 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=76.3
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 014839 210 AK 211 (417)
Q Consensus 210 ~~ 211 (417)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 170
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.2e-17 Score=120.27 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
.+..|+|+||++.++|++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 466799999999999999999999999999999965 7899999999999999999999999999999999976
No 171
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=2e-17 Score=125.04 Aligned_cols=76 Identities=21% Similarity=0.421 Sum_probs=72.0
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.++|||+|||.++++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4789999999999999999999999 99999999876 799999999999999999999999999999999999
Q ss_pred CCCC
Q 014839 331 SKPT 334 (417)
Q Consensus 331 ~~~~ 334 (417)
+++.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8754
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.1e-17 Score=123.91 Aligned_cols=84 Identities=27% Similarity=0.356 Sum_probs=77.9
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..+.++|||+|||+++++++|+++|+.||.|.+++++++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999974 789999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014839 209 AAKGAT 214 (417)
Q Consensus 209 ~~~~~~ 214 (417)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987543
No 173
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=122.36 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=77.7
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||+++++++|+++|+.| .|.+++++++ .+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 889999999999999999999999 99999999999999
Q ss_pred EccCCC
Q 014839 208 WAAKGA 213 (417)
Q Consensus 208 ~~~~~~ 213 (417)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997753
No 174
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=125.54 Aligned_cols=79 Identities=29% Similarity=0.585 Sum_probs=73.5
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEE-Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV-RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v-~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
+.++|||+|||.++++++|+++|+.| |.|.++ +++++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45899999999999999999999999 999999 99876 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 014839 329 WGSKPTPP 336 (417)
Q Consensus 329 ~a~~~~~~ 336 (417)
|++++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876544
No 175
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-17 Score=121.52 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=71.6
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
.+.++|||+|||.++|+++|+++|+.| |.|.++++.++ ||||+|.+.++|.+|++.|||..|+|++|+|.|+++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 445789999999999999999999999 99999999855 99999999999999999999999999999999998764
Q ss_pred C
Q 014839 335 P 335 (417)
Q Consensus 335 ~ 335 (417)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 176
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=129.15 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
.++|||+|||+++++++|+++|++| |.|.+|.+.+++|||||+|.+.++|.+|++.|||..|+|++|+|.|++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4789999999999999999999999 999999999999999999999999999999999999999999999997643
No 177
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=126.99 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=75.0
Q ss_pred CccceEEeeCCCccccHHHHHHhhhh-cCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCe-eCCeeeEE
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHA-LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARI-LCGKPIKC 327 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l~v 327 (417)
.+.++|||+|||.++|+++|+++|+. | |.|.+|+++++ +|||||+|.+.++|.+|++.|||.. |+|++|+|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~--G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY--PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC--TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 34578999999999999999999999 9 99999999886 7999999999999999999999999 99999999
Q ss_pred eecCCCCCCCC
Q 014839 328 SWGSKPTPPGT 338 (417)
Q Consensus 328 ~~a~~~~~~~~ 338 (417)
.|++++.....
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99987655443
No 178
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.6e-17 Score=138.87 Aligned_cols=137 Identities=22% Similarity=0.367 Sum_probs=74.4
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCCCCCCCcCCCCCccchhcccCccccccccCcCCCCCCCCCCCCc
Q 014839 179 VSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISVLFAEDGQEKSNEDAPENNPQ 256 (417)
Q Consensus 179 V~f~~~~~A~~a~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (417)
.+|.+.+++..++..+++.... |+.+...+........... . ...........+....+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~--~-----------------~~s~~~~~~~~~~~~~~ 71 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYER--V-----------------RNEDDDELEPGPQRSVE 71 (165)
T ss_dssp --------------------------------------------------------------------------CCCCC-
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccc--c-----------------ccCCCCCCCCCCCCCCC
Confidence 7899999999999988876654 5555555432111000000 0 00000001112233445
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.++|||+|||..+++++|+++|+.| |.|..|.|..+ +|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 6899999999999999999999999 99999999876 699999999999999999999999999999999999
Q ss_pred CCCCCC
Q 014839 331 SKPTPP 336 (417)
Q Consensus 331 ~~~~~~ 336 (417)
++..+.
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 179
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=126.30 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=75.7
Q ss_pred CCCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 014839 250 APENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGK 323 (417)
Q Consensus 250 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 323 (417)
.+...++.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34455666899999999999999999999999 99999999866 68999999999999999999999999999
Q ss_pred eeEEeecCCCC
Q 014839 324 PIKCSWGSKPT 334 (417)
Q Consensus 324 ~l~v~~a~~~~ 334 (417)
+|+|.|++++.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998753
No 180
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=127.62 Aligned_cols=80 Identities=28% Similarity=0.450 Sum_probs=74.1
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..++|||+|||.++|+++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34789999999999999999999999 99999999986 499999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 014839 331 SKPTPPG 337 (417)
Q Consensus 331 ~~~~~~~ 337 (417)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8766443
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.8e-18 Score=164.88 Aligned_cols=86 Identities=19% Similarity=0.438 Sum_probs=80.9
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|+|..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014839 209 AAKGAT 214 (417)
Q Consensus 209 ~~~~~~ 214 (417)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986543
No 182
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.9e-17 Score=132.01 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=78.3
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCc
Q 014839 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (417)
Q Consensus 38 ~~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 113 (417)
........+.++|||+|||+++++++|+++|+.||+|..|+++.++ .+|||||+|.+.++|.+|++.|+|..|.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3344556778999999999999999999999999999999999763 578999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 014839 114 PIKVNWAYASS 124 (417)
Q Consensus 114 ~l~v~~~~~~~ 124 (417)
.|+|.++.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 183
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=5.5e-18 Score=121.93 Aligned_cols=75 Identities=32% Similarity=0.577 Sum_probs=72.3
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
+|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++|++ +++..++|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999875
No 184
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=124.72 Aligned_cols=78 Identities=33% Similarity=0.469 Sum_probs=72.8
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
...+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 34556899999999999999999999999 99999999876 789999999999999999999999999999999
Q ss_pred eecCC
Q 014839 328 SWGSK 332 (417)
Q Consensus 328 ~~a~~ 332 (417)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 185
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=128.38 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=74.9
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
......++|||+|||+++++++|+++|+.|| |.++++++++ .+|+++|||||+|.+.++|.+|+ .++|..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445678999999999999999999999999 9999999997 68999999999999999999999 7999999999999
Q ss_pred EEEccCC
Q 014839 206 CNWAAKG 212 (417)
Q Consensus 206 v~~~~~~ 212 (417)
|+++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999764
No 186
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=124.21 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCCCceEEECCCCccCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLF----ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
..+.++|||+|||+++++++|+ ++|+.||.|.++++++|+.+ +|||||+|.+.++|.+|++.++|..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456789999999999999999 99999999999999988655 8999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 014839 205 RCNWAAKGA 213 (417)
Q Consensus 205 ~v~~~~~~~ 213 (417)
+|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997653
No 187
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.6e-17 Score=122.33 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=72.6
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
...+.++|||+|||..+|+++|+++|+.|+.|.|.++++. +|||||+|.+.++|.+|++.|||..|+|++|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3445689999999999999999999999955678888775 67999999999999999999999999999999999987
Q ss_pred CCC
Q 014839 333 PTP 335 (417)
Q Consensus 333 ~~~ 335 (417)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 188
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=8.4e-18 Score=134.85 Aligned_cols=86 Identities=19% Similarity=0.374 Sum_probs=79.8
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeC
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK----WLG 200 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~--v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~~~ 200 (417)
......++|||+|||+++++++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|+|. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 99999999999999999999999 999999999999 999
Q ss_pred CeEEEEEEccCCC
Q 014839 201 NRQIRCNWAAKGA 213 (417)
Q Consensus 201 g~~i~v~~~~~~~ 213 (417)
|+.|+|+++.+..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999997754
No 189
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3.4e-18 Score=127.66 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=65.8
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G--~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
.+|||+|||.++|+++|+++|+.| | .|.+++++.+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~--G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT--TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh--CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 479999999999999999999999 9 9999999876 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014839 330 GSKPTP 335 (417)
Q Consensus 330 a~~~~~ 335 (417)
+.++.+
T Consensus 80 ~~~~~~ 85 (90)
T 3p5t_L 80 SNKLEH 85 (90)
T ss_dssp C-----
T ss_pred CCCCcc
Confidence 986543
No 190
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=124.86 Aligned_cols=78 Identities=26% Similarity=0.358 Sum_probs=70.0
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccc-eEEEEeeccccEEEEEeCCHHHHHHHHHHhCC-CeeCCeeeEEeecCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGT-IEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA-RILCGKPIKCSWGSK 332 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~-i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~~ 332 (417)
.+.++|||+|||.++|+++|+++|+.| |. |..+.+ .++|||||+|.+.++|.+|++.||| ..|+|++|+|.|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR--KLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT--TCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 345789999999999999999999999 99 555555 6789999999999999999999999 999999999999987
Q ss_pred CCC
Q 014839 333 PTP 335 (417)
Q Consensus 333 ~~~ 335 (417)
+..
T Consensus 83 ~~~ 85 (93)
T 2cqh_A 83 KKL 85 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 644
No 191
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=128.34 Aligned_cols=83 Identities=34% Similarity=0.585 Sum_probs=79.1
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
+.++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred CCC
Q 014839 211 KGA 213 (417)
Q Consensus 211 ~~~ 213 (417)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 192
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=121.72 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=70.9
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeec-------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
.++|||+|||.++|+++|+++|+.| |.|.++.+.. .+|+|||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3789999999999999999999999 9999999965 378999999999999999999999999999999999
Q ss_pred cCCCC
Q 014839 330 GSKPT 334 (417)
Q Consensus 330 a~~~~ 334 (417)
++++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 193
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=125.03 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCcc-CCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC--CCCCCceEEEE
Q 014839 42 FDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVN 118 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~-~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~v~ 118 (417)
.+..++++|||+|||++ +++++|+++|++||.|.+|++++ ++|||||+|.+.++|.+|++.|++ ..|.|++|+|.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34667899999999998 99999999999999999999974 578999999999999999998864 56999999999
Q ss_pred ecccCCC
Q 014839 119 WAYASSQ 125 (417)
Q Consensus 119 ~~~~~~~ 125 (417)
++.....
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9976554
No 194
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-17 Score=125.69 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=74.4
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhC------CCee
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGN------ARIL 320 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~------g~~~ 320 (417)
...+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|| |..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34456899999999999999999999999 99999999865 7999999999999999999999 9999
Q ss_pred CCeeeEEeecCCCCC
Q 014839 321 CGKPIKCSWGSKPTP 335 (417)
Q Consensus 321 ~g~~l~v~~a~~~~~ 335 (417)
+|++|+|.|++++..
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999987644
No 195
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=127.66 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
......++|||+|||.++++++|+++|+.||+|.+|++..++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445677899999999999999999999999999999998764 479999999999999999999999999999999999
Q ss_pred cccC
Q 014839 120 AYAS 123 (417)
Q Consensus 120 ~~~~ 123 (417)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 196
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=127.13 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=73.7
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||..+++++|+++|+.| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3455899999999999999999999999 99999999866 689999999999999999999999999999999
Q ss_pred eecCCCCC
Q 014839 328 SWGSKPTP 335 (417)
Q Consensus 328 ~~a~~~~~ 335 (417)
.|++++.+
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99986543
No 197
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=128.01 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=74.3
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
......++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344556899999999999999999999999 99999999877 799999999999999999999999999999999
Q ss_pred eecCCC
Q 014839 328 SWGSKP 333 (417)
Q Consensus 328 ~~a~~~ 333 (417)
.|++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999764
No 198
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=5.7e-17 Score=128.75 Aligned_cols=86 Identities=28% Similarity=0.357 Sum_probs=80.2
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||+++++++|+++|+.||.|.++++++++ +|+++|||||+|.+.++|.+|++.++|..+.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014839 208 WAAKGAT 214 (417)
Q Consensus 208 ~~~~~~~ 214 (417)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987543
No 199
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=2.6e-17 Score=131.23 Aligned_cols=89 Identities=21% Similarity=0.427 Sum_probs=82.4
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
......++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 014839 207 NWAAKGATS 215 (417)
Q Consensus 207 ~~~~~~~~~ 215 (417)
.|+.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999765443
No 200
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3.8e-17 Score=126.94 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=74.0
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||..+|+++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456899999999999999999999999 99999999876 699999999999999999999999999999999
Q ss_pred eecCCCCC
Q 014839 328 SWGSKPTP 335 (417)
Q Consensus 328 ~~a~~~~~ 335 (417)
.|++++.+
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987543
No 201
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.3e-17 Score=129.89 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
.+..+.++|||+|||+++++++|+++|++||+|.+|+++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445677999999999999999999999999999999998764 4789999999999999999999999999999999
Q ss_pred Eecc
Q 014839 118 NWAY 121 (417)
Q Consensus 118 ~~~~ 121 (417)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9863
No 202
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=5e-17 Score=134.60 Aligned_cols=88 Identities=26% Similarity=0.398 Sum_probs=82.2
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.+|.|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014839 207 NWAAKGAT 214 (417)
Q Consensus 207 ~~~~~~~~ 214 (417)
+|+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987544
No 203
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=9.6e-17 Score=130.23 Aligned_cols=86 Identities=31% Similarity=0.497 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
.+....++|||+|||+++++++|+++|+.||+|.+|+++.++. +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456678999999999999999999999999999999998753 689999999999999999999999999999999
Q ss_pred EecccCCCCC
Q 014839 118 NWAYASSQRE 127 (417)
Q Consensus 118 ~~~~~~~~~~ 127 (417)
.++.+...+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765443
No 204
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=127.29 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=79.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCC-eeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLN--GKWLGNRQI 204 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-v~~v~~~-~d~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~i 204 (417)
..+.++|||+|||+++++++|+++|+.||. |.++.++ .++.+|+++|||||+|.+.++|..|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEEccCCCCC
Q 014839 205 RCNWAAKGATS 215 (417)
Q Consensus 205 ~v~~~~~~~~~ 215 (417)
+|.|+.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 205
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-17 Score=122.61 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCC--CceEEEEecc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAY 121 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~--g~~l~v~~~~ 121 (417)
..++++|||+|||+++++++|+++|++||+|.+|++..+ ++||||+|.+.++|.+|++.|||..|. |+.|+|.++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 455689999999999999999999999999999998765 789999999999999999999999999 9999999997
Q ss_pred cCC
Q 014839 122 ASS 124 (417)
Q Consensus 122 ~~~ 124 (417)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 206
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=6.2e-17 Score=124.84 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=74.1
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCee---CCe
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARIL---CGK 323 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 323 (417)
...+.++|||+|||.++++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34456899999999999999999999999 99999999875 68999999999999999999999988 899
Q ss_pred eeEEeecCCCCC
Q 014839 324 PIKCSWGSKPTP 335 (417)
Q Consensus 324 ~l~v~~a~~~~~ 335 (417)
+|+|.|++++..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 207
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=9.6e-17 Score=123.00 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=72.0
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||.++++++|+++|+.| | |.+|+++++ +|||||+|.+.++|.+|+ .|||..|+|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456899999999999999999999999 8 999999876 689999999999999999 89999999999999
Q ss_pred eecCCCCCC
Q 014839 328 SWGSKPTPP 336 (417)
Q Consensus 328 ~~a~~~~~~ 336 (417)
.|++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 208
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=126.20 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=78.3
Q ss_pred CCCCCceEEECCCCccCCHHHHH---HhhcCCCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLF---ACFSVFPTCSDARVMWDQKTG---RSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~---~~f~~~G~v~~v~~~~d~~~~---~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
.....++|||+|||+++++++|+ ++|+.||.|.++.+++++.++ +++|||||+|.+.++|.+|++.|+|..++|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456789999999999999999 999999999999999887654 566999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 014839 202 RQIRCNWAAKGA 213 (417)
Q Consensus 202 ~~i~v~~~~~~~ 213 (417)
++|+|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 209
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.4e-17 Score=125.06 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC-----ceEEEE
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG-----QPIKVN 118 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g-----~~l~v~ 118 (417)
....++|||+|||+++++++|+++|+.||+|..|+++.+ |||||+|.+.++|.+||+.|||..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 456789999999999999999999999999999999887 899999999999999999999999999 999999
Q ss_pred ecccCCCC
Q 014839 119 WAYASSQR 126 (417)
Q Consensus 119 ~~~~~~~~ 126 (417)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99876543
No 210
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=120.55 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=72.0
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
.+.++|||+|| ++|+++|+++|+.| |.|.+|.+.+.+|||||+|.+.++|.+|++.|||..|+|++|+|.|++++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 45589999996 89999999999999 999999999999999999999999999999999999999999999998764
Q ss_pred C
Q 014839 335 P 335 (417)
Q Consensus 335 ~ 335 (417)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 211
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.5e-17 Score=126.29 Aligned_cols=78 Identities=22% Similarity=0.481 Sum_probs=72.6
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
...+.++|||+|||.++|+++|+++|+.| |.|.+|.+. +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 44556899999999999999999999999 999999998 89999999999999999999999999999999999987
Q ss_pred CC
Q 014839 333 PT 334 (417)
Q Consensus 333 ~~ 334 (417)
+.
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 212
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=124.27 Aligned_cols=79 Identities=27% Similarity=0.456 Sum_probs=72.3
Q ss_pred CCCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE--------EEeecc------ccEEEEEeCCHHHHHHHHHHhC
Q 014839 251 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQRD------KGFGFVRYSTHPEAALAIQMGN 316 (417)
Q Consensus 251 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~--------v~i~~~------~g~afV~f~~~~~A~~A~~~l~ 316 (417)
+...++.++|||+|||.++++++|+++|+.| |.|.+ +++..+ +|+|||+|.+.++|.+|++.||
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTT--SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 3445566899999999999999999999999 99999 988866 6899999999999999999999
Q ss_pred CCeeCCeeeEEeecC
Q 014839 317 ARILCGKPIKCSWGS 331 (417)
Q Consensus 317 g~~~~g~~l~v~~a~ 331 (417)
|..|+|++|+|.||+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999974
No 213
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.6e-17 Score=122.25 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=71.3
Q ss_pred CCCccceEEeeCCCc-cccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 253 NNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
..++.++|||+|||. ++++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.|||..|+|++|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 445668999999998 99999999999999 999999995 8999999999999999999999999999999999997
Q ss_pred CC
Q 014839 332 KP 333 (417)
Q Consensus 332 ~~ 333 (417)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 214
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.6e-17 Score=128.08 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
....+|||+|||+++++++|+++|+.|| .|..+++..++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3467899999999999999999999999 899999876678899999999999999999999999999999999998654
No 215
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1e-17 Score=121.24 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=73.1
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
++|||+|||+++++++|+++|+.||+|.++.+++++.+|+++|||||+|.+.++|.+|++.++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999888 9999999999986
No 216
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=125.03 Aligned_cols=77 Identities=26% Similarity=0.524 Sum_probs=73.0
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 336 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 336 (417)
++|||+|||.++|+++|+++|+.| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999 99999999997 999999999999999999999999999999999999876543
No 217
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=124.42 Aligned_cols=84 Identities=25% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~-v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
+....++|||+|||+++++++|+++|+.||.|.+ ++|+++ .+|+++|||||+|.+.++|.+|++. ++..++||.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 8999999999999999999999996 999999999999
Q ss_pred EEccCCC
Q 014839 207 NWAAKGA 213 (417)
Q Consensus 207 ~~~~~~~ 213 (417)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987643
No 218
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=129.06 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCccceEEeeCCCccccHHHHH----HhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
.++.++|||+|||+.+++++|+ ++|++| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456899999999999999876 699999 99999998653 89999999999999999999999999999999
Q ss_pred EeecCCCC
Q 014839 327 CSWGSKPT 334 (417)
Q Consensus 327 v~~a~~~~ 334 (417)
|.|++++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 219
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=131.24 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=73.3
Q ss_pred CCCCccceEEeeCCCccccHHHHHHhhhhcCccceEE--EEeecc------ccEEEEEeCCHHHHHHHHHHhCCC----e
Q 014839 252 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--VRVQRD------KGFGFVRYSTHPEAALAIQMGNAR----I 319 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~--v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~----~ 319 (417)
....+.++|||+|||+++|+++|+++|+.| |.|.. |+|++| ||||||+|.+. +|.+|++.|||. .
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPY--AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGG--CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 344566899999999999999999999999 99977 999876 69999999999 999999999999 9
Q ss_pred eCCeeeEEeecCCCCC
Q 014839 320 LCGKPIKCSWGSKPTP 335 (417)
Q Consensus 320 ~~g~~l~v~~a~~~~~ 335 (417)
|+|+.|+|.|+++...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999987543
No 220
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=127.18 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=78.9
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
..++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 457899999999999999999999999999999999999999999999999999999999996 9999999999999998
Q ss_pred CCCCC
Q 014839 211 KGATS 215 (417)
Q Consensus 211 ~~~~~ 215 (417)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=128.19 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=77.5
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v-~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
.....++|||+|||+++++++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|.+|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 899999997 999999999999999999999996 999999999999
Q ss_pred EEccCC
Q 014839 207 NWAAKG 212 (417)
Q Consensus 207 ~~~~~~ 212 (417)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 222
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.6e-17 Score=125.28 Aligned_cols=81 Identities=27% Similarity=0.410 Sum_probs=73.9
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceE--------EEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCe
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE--------DVRVQRD------KGFGFVRYSTHPEAALAIQMGNARI 319 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~--------~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~ 319 (417)
....++|||+|||.++|+++|+++|+.| |.|. .|++..+ +|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC--GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT--SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456899999999999999999999999 9999 6888876 6899999999999999999999999
Q ss_pred eCCeeeEEeecCCCCCC
Q 014839 320 LCGKPIKCSWGSKPTPP 336 (417)
Q Consensus 320 ~~g~~l~v~~a~~~~~~ 336 (417)
|+|++|+|.|++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=122.23 Aligned_cols=78 Identities=27% Similarity=0.438 Sum_probs=71.7
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
.+.++|||+|||.++++++|+++|+.| | |.+|+++++ +|||||+|.+.++|.+|+ .|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 455899999999999999999999999 9 999999765 689999999999999999 99999999999999
Q ss_pred eecCCCCCC
Q 014839 328 SWGSKPTPP 336 (417)
Q Consensus 328 ~~a~~~~~~ 336 (417)
.|++++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 224
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.5e-16 Score=124.51 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=70.1
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccE-EEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeecCCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGF-GFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKP 333 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~ 333 (417)
...|||+||++.+|+++|+++|++| |.|.+|.+.+.+|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 3557899999999999999999999 99999999876796 9999999999999999999999987 69999999876
Q ss_pred C
Q 014839 334 T 334 (417)
Q Consensus 334 ~ 334 (417)
.
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 5
No 225
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=8e-17 Score=131.40 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC--ceEEEEecc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~~ 121 (417)
++...+|||+||++.+++++|+++|++||.|.+|+++.+++++||||+|.+.++|.+|++.|||..|.| ++|+|.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 444567999999999999999999999999999999877777899999999999999999999999976 999999998
Q ss_pred cCC
Q 014839 122 ASS 124 (417)
Q Consensus 122 ~~~ 124 (417)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 226
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=125.20 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=72.0
Q ss_pred ccceEEeeCCCccccHHHHH---HhhhhcCccceEEEEeeccc---------cEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 014839 256 QYTTVYVGNLSSEVTSVDLH---RHFHALCVGTIEDVRVQRDK---------GFGFVRYSTHPEAALAIQMGNARILCGK 323 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~---~~F~~~~~G~i~~v~i~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 323 (417)
..++|||+|||+++++++|+ ++|++| |.|.+|.+.+++ |||||+|.+.++|.+|++.|||..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 34789999999999999999 999999 999999998763 7999999999999999999999999999
Q ss_pred eeEEeecCCCC
Q 014839 324 PIKCSWGSKPT 334 (417)
Q Consensus 324 ~l~v~~a~~~~ 334 (417)
+|+|.|++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 227
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.9e-17 Score=125.68 Aligned_cols=85 Identities=21% Similarity=0.508 Sum_probs=78.3
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-------
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL------- 199 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~------- 199 (417)
......++|||+|||+++++++|+++|+.||.|.++++++++ +++++|||||+|.+.++|.+|++.|+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred -CCeEEEEEEccCC
Q 014839 200 -GNRQIRCNWAAKG 212 (417)
Q Consensus 200 -~g~~i~v~~~~~~ 212 (417)
.+++|.|.|+.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999998754
No 228
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=120.27 Aligned_cols=81 Identities=27% Similarity=0.451 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
...+.++|||+|||+++++++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.|||..|.|+.|+|.++.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 355678999999999999999999999999999999864 4999999999999999999999999999999999987
Q ss_pred CCCCC
Q 014839 123 SSQRE 127 (417)
Q Consensus 123 ~~~~~ 127 (417)
+....
T Consensus 82 ~~~~~ 86 (92)
T 2dgt_A 82 RLRTA 86 (92)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 65443
No 229
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.2e-17 Score=125.33 Aligned_cols=79 Identities=24% Similarity=0.484 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
...+.++|||+|||+++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..|.|+.|+|.++.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 35667899999999999999999999999999999997 78999999999999999999999999999999999876
Q ss_pred CCC
Q 014839 123 SSQ 125 (417)
Q Consensus 123 ~~~ 125 (417)
...
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 230
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-17 Score=127.55 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
...+++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456899999999999999999999999999999997 5678999999999999999999999999999999999865
No 231
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=123.30 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=72.8
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceE-EEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCee---
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE-DVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKP--- 324 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~-~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 324 (417)
.+.++|||+|||.++++++|+++|+.| |.|. +|+++++ +|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345899999999999999999999999 9999 9999876 489999999999999999999999999999
Q ss_pred -eEEeecCCCCC
Q 014839 325 -IKCSWGSKPTP 335 (417)
Q Consensus 325 -l~v~~a~~~~~ 335 (417)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999986543
No 232
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=124.46 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=75.5
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||++++++||+++|+.||.+ +|+|++|+ +++++|||||+|.+.++|++|++ +++..+.||.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556799999999999999999999999955 99999996 89999999999999999999996 79999999999999
Q ss_pred EccCCC
Q 014839 208 WAAKGA 213 (417)
Q Consensus 208 ~~~~~~ 213 (417)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887643
No 233
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8e-17 Score=121.77 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 42 FDASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~-~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
....++++|||+|||+ ++++++|+++|+.||.|.+|++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3455688999999998 9999999999999999999988 3789999999999999999999999999999999998
Q ss_pred ccC
Q 014839 121 YAS 123 (417)
Q Consensus 121 ~~~ 123 (417)
..+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 234
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=6.9e-17 Score=125.41 Aligned_cols=96 Identities=23% Similarity=0.414 Sum_probs=84.8
Q ss_pred CCCceEEEEecccCCCCCCCCCCceEEECCCCcc-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 014839 110 IFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQ 188 (417)
Q Consensus 110 i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~ 188 (417)
..|..+++..+............++|||+|||++ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|.
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3466777777766666666667789999999999 999999999999999999988 4899999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEccCCC
Q 014839 189 SAINDLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 189 ~a~~~l~g~~~~g~~i~v~~~~~~~ 213 (417)
+|++.|++..+.|+.|+|.++....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999997543
No 235
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=127.67 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=76.9
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+.+++++|||||+|.+.++|.+|+ .++|..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3478999999999999999999999999999999999999999999999999999999999 899999999999999986
Q ss_pred CC
Q 014839 211 KG 212 (417)
Q Consensus 211 ~~ 212 (417)
++
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 236
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=131.49 Aligned_cols=83 Identities=37% Similarity=0.540 Sum_probs=77.9
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.++|..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 014839 207 NWA 209 (417)
Q Consensus 207 ~~~ 209 (417)
+++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 237
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=5.3e-18 Score=126.70 Aligned_cols=81 Identities=27% Similarity=0.474 Sum_probs=74.2
Q ss_pred ceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 133 ~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.+ |.+|+..++|..++|++|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999775
Q ss_pred CC
Q 014839 213 AT 214 (417)
Q Consensus 213 ~~ 214 (417)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 238
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=3e-17 Score=124.95 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=70.1
Q ss_pred cceEEeeCCCc------cccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCC-e
Q 014839 257 YTTVYVGNLSS------EVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCG-K 323 (417)
Q Consensus 257 ~~~l~V~nLp~------~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g-~ 323 (417)
.++|||+|||. ++++++|+++|++| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..|.| +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 47899999999 99999999999999 99999999865 6999999999999999999999999999 9
Q ss_pred eeEEeecCC
Q 014839 324 PIKCSWGSK 332 (417)
Q Consensus 324 ~l~v~~a~~ 332 (417)
.|+|.++++
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 239
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=7.3e-17 Score=122.26 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=72.6
Q ss_pred CccceEEeeCCCccccHHHHH----HhhhhcCccceEEEEeec---cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 255 PQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
++.++|||+|||.++++++|+ ++|+.| |.|.+|.+.+ .+|+|||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456899999999999999999 999999 9999999984 4899999999999999999999999999999999
Q ss_pred eecCCCC
Q 014839 328 SWGSKPT 334 (417)
Q Consensus 328 ~~a~~~~ 334 (417)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 240
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=122.33 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=69.4
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEee--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
...++|||+|||.++++++|+++|+.| |.|. +.++ +.+|||||+|.+.++|.+|++.|||..|+|++|+|.|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL--GSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT--TCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc--CCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345799999999999999999999999 9986 5555 4489999999999999999999999999999999999987
Q ss_pred CC
Q 014839 333 PT 334 (417)
Q Consensus 333 ~~ 334 (417)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 241
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=5.6e-17 Score=127.34 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=76.7
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~---v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
.....++|||+|||+++++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++|++ +++..++||.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3455688999999999999999999999999 89999999965 9999999999999999999999 99999999999
Q ss_pred EEEEccCC
Q 014839 205 RCNWAAKG 212 (417)
Q Consensus 205 ~v~~~~~~ 212 (417)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998643
No 242
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.1e-17 Score=124.77 Aligned_cols=83 Identities=30% Similarity=0.527 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
....++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 455789999999999999999999999999999999876 789999999999999999999999999999999999876
Q ss_pred CCCCC
Q 014839 124 SQRED 128 (417)
Q Consensus 124 ~~~~~ 128 (417)
.....
T Consensus 100 ~~~~~ 104 (109)
T 1x4g_A 100 PDMTS 104 (109)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 65433
No 243
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=127.32 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCccCCHHHHH----HHHhccCCcceEEEEec-CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~----~~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
..++++|||+|||+.+++++|+ ++|++||+|.+|.+.+. +++|||||+|.+.++|..|++.|||..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999999876 69999999999988664 568999999999999999999999999999999999
Q ss_pred ecccCC
Q 014839 119 WAYASS 124 (417)
Q Consensus 119 ~~~~~~ 124 (417)
|+..+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 244
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.9e-16 Score=122.83 Aligned_cols=76 Identities=30% Similarity=0.594 Sum_probs=71.2
Q ss_pred ccceEEeeCCCcc-ccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 256 QYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 256 ~~~~l~V~nLp~~-~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
..++|||+|||.. +++++|+++|+.| |.|.+|.+ .+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY--GRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG--SCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 4479999999999 9999999999999 99999999 68999999999999999999999999999999999998654
Q ss_pred C
Q 014839 335 P 335 (417)
Q Consensus 335 ~ 335 (417)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 245
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=119.23 Aligned_cols=77 Identities=21% Similarity=0.444 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHh-cCCCCCCceEEEEecc
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL-NGRHIFGQPIKVNWAY 121 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~~~~ 121 (417)
.....++|||+|||.++++++|+++|+.||+|.+|++.++ +|||||+|.+.++|.+|++.| +|..+.|++|+|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4556789999999999999999999999999999999874 689999999999999999988 9999999999999873
No 246
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=120.74 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=75.4
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
...+.++|||+|||+++++++|+++|+.||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45567899999999999999999999999977 56666 788999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014839 208 WAAKGAT 214 (417)
Q Consensus 208 ~~~~~~~ 214 (417)
|+.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 247
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.9e-17 Score=130.73 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~---v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
+....++|||+|||+++++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++|++ +++..++||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456689999999999999999999999999 89999999976 9999999999999999999999 99999999999
Q ss_pred EEEEccC
Q 014839 205 RCNWAAK 211 (417)
Q Consensus 205 ~v~~~~~ 211 (417)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999854
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=119.73 Aligned_cols=80 Identities=26% Similarity=0.519 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
...+.++|||+|||+++++++|+++|+.||+|.+|++.+ +||||+|.+.++|.+|++.|||..|.|+.|+|.++.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 355678999999999999999999999999999999964 4999999999999999999999999999999999987
Q ss_pred CCCC
Q 014839 123 SSQR 126 (417)
Q Consensus 123 ~~~~ 126 (417)
...+
T Consensus 81 ~~~~ 84 (90)
T 2dnp_A 81 GQKK 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 249
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.8e-16 Score=129.36 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=70.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeecC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGS 331 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~ 331 (417)
...+|||+||++.+|+++|+++|++| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|.| ++|+|.|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34679999999999999999999999 99999999754 6799999999999999999999999965 999999999
Q ss_pred CCC
Q 014839 332 KPT 334 (417)
Q Consensus 332 ~~~ 334 (417)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 250
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=120.64 Aligned_cols=86 Identities=30% Similarity=0.509 Sum_probs=77.8
Q ss_pred CCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....+.++|||+|||+++++++|+++|+.|+ .++++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456778999999999999999999999873 678888888999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 014839 206 CNWAAKGAT 214 (417)
Q Consensus 206 v~~~~~~~~ 214 (417)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987644
No 251
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=8.7e-17 Score=119.75 Aligned_cols=74 Identities=26% Similarity=0.502 Sum_probs=70.0
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|+ .|||..|+|++|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3789999999999999999999999 99999999876 789999999999999999 99999999999999999
Q ss_pred CCC
Q 014839 331 SKP 333 (417)
Q Consensus 331 ~~~ 333 (417)
+++
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 252
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-16 Score=120.51 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=69.7
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
...+.++|||+|||.++|+++|+++|+.| |.| +++++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKA--TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSC--SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 34456899999999999999999999999 988 34433 899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 014839 328 SWGSKPTPP 336 (417)
Q Consensus 328 ~~a~~~~~~ 336 (417)
.|++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 253
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.8e-17 Score=122.90 Aligned_cols=79 Identities=25% Similarity=0.483 Sum_probs=71.5
Q ss_pred CCccceEEeeCCCc-cccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 254 NPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 254 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
.++.++|||+|||. .+++++|+++|+.| |.|.+|.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 34568999999998 99999999999999 999999995 78999999999999999999999999999999999987
Q ss_pred CCCC
Q 014839 333 PTPP 336 (417)
Q Consensus 333 ~~~~ 336 (417)
...+
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 254
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=120.68 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceE-EEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC-KLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v-~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
...+++|||+|||+++++++|+++|+.||+|.+| .++.++..+.|||+|.+.++|.+|++.|||..|.|++|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4456889999999999999999999999999999 488887777799999999999999999999999999999999976
Q ss_pred C
Q 014839 123 S 123 (417)
Q Consensus 123 ~ 123 (417)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 255
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.2e-16 Score=123.50 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=72.1
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
...+.++|||+|||..+|+++|+++|+.| |.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34556899999999999999999999999 99999999866 789999999999999999999999999999999
Q ss_pred eecC
Q 014839 328 SWGS 331 (417)
Q Consensus 328 ~~a~ 331 (417)
.|++
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 256
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=123.59 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
.....++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++. |+..|+|+.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34456899999999999999999999999 99999999886 58999999999999999999 99999999999
Q ss_pred EeecCCCCC
Q 014839 327 CSWGSKPTP 335 (417)
Q Consensus 327 v~~a~~~~~ 335 (417)
|.|++++..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987653
No 257
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=8e-17 Score=128.34 Aligned_cols=82 Identities=30% Similarity=0.523 Sum_probs=75.2
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
.....++|||+|||..+|+++|+++|+.| |.|.+|.++.+ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 33456899999999999999999999999 99999999876 79999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 014839 327 CSWGSKPTPP 336 (417)
Q Consensus 327 v~~a~~~~~~ 336 (417)
|.|+++...+
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876544
No 258
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=124.56 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=76.1
Q ss_pred CCCCCceEEECCCCccC------CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 128 DTSGHFNVFVGDLSPEV------TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~------~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
.....++|||+|||+.+ ++++|+++|+.||.|.++.++ +.+|+++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34456899999999999 789999999999999999988 4789999999999999999999999999999999
Q ss_pred e-EEEEEEccCC
Q 014839 202 R-QIRCNWAAKG 212 (417)
Q Consensus 202 ~-~i~v~~~~~~ 212 (417)
+ +|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998754
No 259
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=122.67 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=72.0
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccc-eEEEEee-------ccccEEEEEeCCHHHHHHHHHHhC--CCeeCCeee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGT-IEDVRVQ-------RDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPI 325 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~-i~~v~i~-------~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l 325 (417)
+.++|||+|||.++|+++|+++|+.| |. |.+|.++ +.+|||||+|.+.++|.+|++.|| +..|+|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV--TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH--STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh--cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45899999999999999999999999 98 9999998 348999999999999999999996 589999999
Q ss_pred EEeecCCCCCC
Q 014839 326 KCSWGSKPTPP 336 (417)
Q Consensus 326 ~v~~a~~~~~~ 336 (417)
+|.|+++...+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 260
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=130.30 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=77.2
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~ 207 (417)
.....++|||+|||+++++++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ +++..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999999987777777899999999999999999999999 99999999999999
Q ss_pred EccCC
Q 014839 208 WAAKG 212 (417)
Q Consensus 208 ~~~~~ 212 (417)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 261
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=1.9e-16 Score=121.27 Aligned_cols=79 Identities=28% Similarity=0.535 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
..+.++|||+|||+++++++|+++|+.||.|..|++. ++||||+|.+.++|.+|++.|||..|.|+.|+|.++.+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4557899999999999999999999999999999886 459999999999999999999999999999999999876
Q ss_pred CCC
Q 014839 124 SQR 126 (417)
Q Consensus 124 ~~~ 126 (417)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 262
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=4.7e-16 Score=123.46 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
....+.++|||+|||+++++++|+++|+.||+|.+|++..++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 455677899999999999999999999999999999999875 57899999999999999999999999999999999
Q ss_pred ecccCCC
Q 014839 119 WAYASSQ 125 (417)
Q Consensus 119 ~~~~~~~ 125 (417)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9976554
No 263
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-17 Score=125.54 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=72.3
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
+.++|||+|||..+++++|+++|+.| |.|.++.+.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 45789999999999999999999999 99999999876 69999999999999999999999999999999999
Q ss_pred cCCCC
Q 014839 330 GSKPT 334 (417)
Q Consensus 330 a~~~~ 334 (417)
+++..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98654
No 264
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-16 Score=120.47 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEeccc
Q 014839 44 ASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (417)
Q Consensus 44 ~~~~~~v~v~nLp~-~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 122 (417)
..+.++|||+|||+ ++++++|+++|+.||+|.+|++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 45688999999998 99999999999999999999984 68999999999999999999999999999999999976
Q ss_pred CCCC
Q 014839 123 SSQR 126 (417)
Q Consensus 123 ~~~~ 126 (417)
....
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 5543
No 265
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=120.82 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
.....++|||+|||+++++++|+++|+.||.|..++++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44557889999999999999999999999999988887764 36899999999999999999999999999999999
Q ss_pred ecccC
Q 014839 119 WAYAS 123 (417)
Q Consensus 119 ~~~~~ 123 (417)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98654
No 266
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.1e-17 Score=118.81 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=71.8
Q ss_pred eEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 134 ~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
+|||+|||+++++++|+++|+.||+|.++.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999 5899999999999875
No 267
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=118.91 Aligned_cols=80 Identities=29% Similarity=0.514 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhcc--CCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSST--GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~--G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
...++++|||+|||+++++++|+++|+.| |.|..|++. ++||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34567899999999999999999999999 889888763 679999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014839 121 YASSQR 126 (417)
Q Consensus 121 ~~~~~~ 126 (417)
.+....
T Consensus 87 ~~~~~~ 92 (99)
T 2cpd_A 87 KPVDKD 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 268
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=122.78 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~ 210 (417)
...+|||+|||++++++||+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|.+|+. +++..++||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 35789999999999999999999999 899999999964 9999999999999999999995 99999999999998875
Q ss_pred C
Q 014839 211 K 211 (417)
Q Consensus 211 ~ 211 (417)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 269
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=122.88 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=68.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..++|||+|||+++|+++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|+. ++|..|+|+.|+|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34789999999999999999999999 99999999875 7999999999999999999 8999999999999987
Q ss_pred C
Q 014839 331 S 331 (417)
Q Consensus 331 ~ 331 (417)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 270
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2e-16 Score=124.28 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=71.6
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-ccE-EEEEeCCHHHHHHHHHHhCCCeeCC--eeeEEeec
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGF-GFVRYSTHPEAALAIQMGNARILCG--KPIKCSWG 330 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 330 (417)
.....|||+||++.+|+++|+++|++| |.|.+|++.++ +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 444678999999999999999999999 99999998765 677 9999999999999999999999988 99999999
Q ss_pred CCCC
Q 014839 331 SKPT 334 (417)
Q Consensus 331 ~~~~ 334 (417)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 271
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-17 Score=128.74 Aligned_cols=76 Identities=29% Similarity=0.446 Sum_probs=70.7
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...++|||+|||.++++++|+++|+.| |.|.+|+++.+ +|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 345799999999999999999999999 99999999865 689999999999999999 999999999999999
Q ss_pred ecCCC
Q 014839 329 WGSKP 333 (417)
Q Consensus 329 ~a~~~ 333 (417)
|+++.
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 98754
No 272
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-16 Score=121.94 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccce----EEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI----EDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i----~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||.++|+++|+++|+.| |.| ..+++... +|||||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH--HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 998 55555533 799999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 014839 328 SWGSKPTPP 336 (417)
Q Consensus 328 ~~a~~~~~~ 336 (417)
.|++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 273
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=122.31 Aligned_cols=85 Identities=18% Similarity=0.349 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCc----ceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPL----EGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v----~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
..++++|||+|||+++++++|+++|+.||.| ..+++...+.+|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999998 556666566789999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 014839 120 AYASSQRED 128 (417)
Q Consensus 120 ~~~~~~~~~ 128 (417)
+.+...+..
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 987665443
No 274
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.1e-17 Score=132.68 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=74.1
Q ss_pred CEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCCCCCCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEe
Q 014839 86 SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (417)
Q Consensus 86 g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~ 165 (417)
++|+.+|..++.+..++...... ..|...--... ...........++|||+|||++++++||+++|+.|| |.+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g-~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC-CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 56788888887777666543322 22222111111 111123345567999999999999999999999999 6799999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 014839 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (417)
Q Consensus 166 ~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~~ 213 (417)
+|+. |+++|||||+|.+.++|++|+ .+++..+.||.|.|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9965 999999999999999999999 589999999999999987654
No 275
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=1.5e-16 Score=117.95 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=70.5
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
....+.++|||+|||+++++++|+++|+.||+|.+|+++.++. +|||||+|.+.++|.+|++ +++..|.|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 4456788999999999999999999999999999999998753 6899999999999999995 6888999999999
Q ss_pred Eec
Q 014839 118 NWA 120 (417)
Q Consensus 118 ~~~ 120 (417)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 276
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=119.40 Aligned_cols=80 Identities=36% Similarity=0.590 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCC-cceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC-CCCCCceEEEEecc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG-RHIFGQPIKVNWAY 121 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~-v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g-~~i~g~~l~v~~~~ 121 (417)
....++|||+|||+++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 345788999999999999999999999999 6766653 468999999999999999999999 99999999999998
Q ss_pred cCCCC
Q 014839 122 ASSQR 126 (417)
Q Consensus 122 ~~~~~ 126 (417)
++..+
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 277
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=113.79 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=66.8
Q ss_pred ccce-EEeeCCCccccHHH----HHHhhhhcCcc-ceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTT-VYVGNLSSEVTSVD----LHRHFHALCVG-TIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~-l~V~nLp~~~t~~~----L~~~F~~~~~G-~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
++.+ |||+|||+.+++++ |+++|+.| | .|.+|. .|+|||+|.+.++|.+|++.|+|..|.||+|+|.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y--GG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNC--GGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTT--TCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHc--CCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3445 99999999999988 55899999 6 999993 39999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014839 330 GSKPTPP 336 (417)
Q Consensus 330 a~~~~~~ 336 (417)
|+.....
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9977643
No 278
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-17 Score=125.33 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~---v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 203 (417)
......++|||+|||+++++++|+++|+.||. |.+|++++|+. |+++|||||+|.+.++|.+|++ +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34456789999999999999999999999998 89999999976 9999999999999999999999 9999999999
Q ss_pred EEEEEccC
Q 014839 204 IRCNWAAK 211 (417)
Q Consensus 204 i~v~~~~~ 211 (417)
|+|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999865
No 279
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=124.30 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~-----~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
......++|||+|||+++++++|+++|+.|| |.+|++..++ ++|||||+|.+.++|.+|+ .|+|..|.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456678999999999999999999999999 9999998765 4789999999999999999 8999999999999
Q ss_pred EEecccC
Q 014839 117 VNWAYAS 123 (417)
Q Consensus 117 v~~~~~~ 123 (417)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998764
No 280
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=121.58 Aligned_cols=77 Identities=22% Similarity=0.485 Sum_probs=71.3
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCee--------C
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARIL--------C 321 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~--------~ 321 (417)
...++|||+|||.++++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..| .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 445899999999999999999999999 99999999876 78999999999999999999999999 6
Q ss_pred CeeeEEeecCCC
Q 014839 322 GKPIKCSWGSKP 333 (417)
Q Consensus 322 g~~l~v~~a~~~ 333 (417)
+++|+|.|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999854
No 281
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-16 Score=117.33 Aligned_cols=86 Identities=26% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 38 ~~~~~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
.+......+.++|||+|| ++++++|+++|+.||+|.+|++. +++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 334445567889999996 99999999999999999999884 67889999999999999999999999999999999
Q ss_pred EecccCCCCC
Q 014839 118 NWAYASSQRE 127 (417)
Q Consensus 118 ~~~~~~~~~~ 127 (417)
.++.++....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9997765443
No 282
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-17 Score=126.58 Aligned_cols=84 Identities=29% Similarity=0.455 Sum_probs=77.0
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
....++|||+|||+++++++|+++|+.||.|.. .++.++.+++++|||||+|.+.++|.+|++ ++|..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 677777889999999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 014839 209 AAKGAT 214 (417)
Q Consensus 209 ~~~~~~ 214 (417)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 283
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.8e-16 Score=117.61 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=71.2
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||.++++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++ ++..|+|+.|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 3445789999999999999999999999 99999999876 6899999999999999998 478999999999
Q ss_pred eecCCCCCC
Q 014839 328 SWGSKPTPP 336 (417)
Q Consensus 328 ~~a~~~~~~ 336 (417)
.|++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876543
No 284
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=130.98 Aligned_cols=75 Identities=17% Similarity=0.344 Sum_probs=69.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G--~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..++|||+|||+++|+++|+++|+.| | .|.+|+++.| +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI--GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT--TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH--CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 44799999999999999999999999 9 9999999876 689999999999999999999999999999999
Q ss_pred eecCC
Q 014839 328 SWGSK 332 (417)
Q Consensus 328 ~~a~~ 332 (417)
.++++
T Consensus 132 ~~a~~ 136 (156)
T 3n9u_C 132 RPATR 136 (156)
T ss_dssp EECCH
T ss_pred EEcCC
Confidence 99864
No 285
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.7e-16 Score=118.46 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=68.8
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeec---cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..+.++|||+|||.++|+++|+++|+.| +.|.-+.-.. .+|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3455899999999999999999999988 6554443321 1699999999999999999999999999999999999
Q ss_pred CCCCCC
Q 014839 331 SKPTPP 336 (417)
Q Consensus 331 ~~~~~~ 336 (417)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876544
No 286
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=123.54 Aligned_cols=79 Identities=27% Similarity=0.486 Sum_probs=72.8
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...++|||+|||.++|+++|+++|+.| |.|..|+++++ +|||||+|.+.++|.+|++. ++..|+|+.|+|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345899999999999999999999999 99999999876 68999999999999999998 9999999999999
Q ss_pred ecCCCCCC
Q 014839 329 WGSKPTPP 336 (417)
Q Consensus 329 ~a~~~~~~ 336 (417)
|++++...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99876543
No 287
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=2.9e-16 Score=121.44 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=69.8
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
.....++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.+ +..|+|+.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 44456899999999999999999999999 99999999876 689999999999999999986 5999999999
Q ss_pred EeecCCCCC
Q 014839 327 CSWGSKPTP 335 (417)
Q Consensus 327 v~~a~~~~~ 335 (417)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999986543
No 288
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=4.2e-16 Score=129.04 Aligned_cols=80 Identities=29% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..+.++|||+|||.++|+++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|.+|++.||+..|+|++|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456899999999999999999999999 99999999876 589999999999999999999999999999999
Q ss_pred eecCCCCC
Q 014839 328 SWGSKPTP 335 (417)
Q Consensus 328 ~~a~~~~~ 335 (417)
.|+++...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986543
No 289
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-17 Score=120.24 Aligned_cols=74 Identities=26% Similarity=0.319 Sum_probs=69.7
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
+.++|||+|||.++++++|+++|+.| |.|.++.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45799999999999999999999999 99999999876 78999999999999999999999999999999987
Q ss_pred cC
Q 014839 330 GS 331 (417)
Q Consensus 330 a~ 331 (417)
.+
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 290
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-16 Score=122.68 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=72.3
Q ss_pred ceEEECCC----CccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 014839 133 FNVFVGDL----SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN----QED----AQSAIN--DLNGKW 198 (417)
Q Consensus 133 ~~l~v~nl----p~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~g~~ 198 (417)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 888888 789999
Q ss_pred eCCeEEEEEEccCC
Q 014839 199 LGNRQIRCNWAAKG 212 (417)
Q Consensus 199 ~~g~~i~v~~~~~~ 212 (417)
|+|++|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 291
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=120.64 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=71.3
Q ss_pred CccceEEeeCCCccc------cHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe-
Q 014839 255 PQYTTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK- 323 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~------t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 323 (417)
...++|||+|||..+ |+++|+++|+.| |.|.+|.+++. +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345789999999999 789999999999 99999999843 79999999999999999999999999998
Q ss_pred eeEEeecCCCC
Q 014839 324 PIKCSWGSKPT 334 (417)
Q Consensus 324 ~l~v~~a~~~~ 334 (417)
+|+|.|+.+..
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987543
No 292
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=7.4e-17 Score=121.75 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=68.2
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
++.++|||+|||.++++++|+++|+.| |.|..+.++.+ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS--CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345899999999999999999999999 99988777653 6999999999999999999999999999999999
Q ss_pred ecCC
Q 014839 329 WGSK 332 (417)
Q Consensus 329 ~a~~ 332 (417)
++++
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9753
No 293
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=5.7e-17 Score=118.36 Aligned_cols=73 Identities=16% Similarity=0.330 Sum_probs=67.9
Q ss_pred CceEEECCCCccC------CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 014839 132 HFNVFVGDLSPEV------TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR-QI 204 (417)
Q Consensus 132 ~~~l~v~nlp~~~------~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~i 204 (417)
+++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|.+|++.|+|..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 46899999999999999999999999999999999 88
Q ss_pred EE
Q 014839 205 RC 206 (417)
Q Consensus 205 ~v 206 (417)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=123.17 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 123 (417)
.+..++|||+|||+++++++|+++|++||+|..|.+.+ .++||||+|.+.++|.+|++.|||..|.|+.|+|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34568999999999999999999999999999998864 6789999999999999999999999999999999998754
Q ss_pred C
Q 014839 124 S 124 (417)
Q Consensus 124 ~ 124 (417)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 295
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.2e-16 Score=121.14 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=75.3
Q ss_pred CCCCceEEECCCCccCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLF----ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
..++++|||+|||+++++++|+ ++|+.||.|.++.+.. +|+++|||||+|.+.++|..|++.|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998873 57889999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 014839 205 RCNWAAKGA 213 (417)
Q Consensus 205 ~v~~~~~~~ 213 (417)
+|.|+.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 296
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=112.08 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=66.7
Q ss_pred CCCe-EEEcCCCccCCHHH----HHHHHhccC-CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 46 TCRS-VYVGNIHPQVTNAL----LQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 46 ~~~~-v~v~nLp~~~~e~~----L~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
++.| |||+|||+++++++ |+++|++|| +|.+| ..|+|||+|.+.++|.+|++.|+|..+.||+|+|.+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3566 99999999999988 558999995 99988 239999999999999999999999999999999999
Q ss_pred cccCCCC
Q 014839 120 AYASSQR 126 (417)
Q Consensus 120 ~~~~~~~ 126 (417)
++.++.-
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9876643
No 297
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.2e-16 Score=140.40 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=76.8
Q ss_pred CCceEEECCCCccCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 131 ~~~~l~v~nlp~~~~e~~l~~~f~~~G--~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
..++|||+|||+++++++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 014839 209 AAK 211 (417)
Q Consensus 209 ~~~ 211 (417)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 298
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=116.98 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=70.2
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEE-eecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR-VQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~-i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
..++|||+|||+++++++|+++|+.| |.|.+++ ++.+ .|.|||+|.+.++|.+|++.|||..|+|++|+|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 45789999999999999999999999 9999994 7776 45699999999999999999999999999999999987
Q ss_pred C
Q 014839 333 P 333 (417)
Q Consensus 333 ~ 333 (417)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 299
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=115.98 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=67.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecccc-EEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
..++|||+|||.++|+++|+++|+.| |.|.+|.+.+..| ||||+|.+.++|.+|++ |||..|+|+.|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34789999999999999999999999 9999984433333 99999999999999999 99999999999999987554
Q ss_pred C
Q 014839 335 P 335 (417)
Q Consensus 335 ~ 335 (417)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 300
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=3.2e-16 Score=122.46 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=68.0
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCee-----eEEeec
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP-----IKCSWG 330 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----l~v~~a 330 (417)
..++|||+|||+++++++|+++|+.| |.|.+|.++.+ |||||+|.+.++|.+|++.|||..|+|+. |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 34789999999999999999999999 99999999988 99999999999999999999999999998 777777
Q ss_pred CCCCC
Q 014839 331 SKPTP 335 (417)
Q Consensus 331 ~~~~~ 335 (417)
.+...
T Consensus 92 ~~~~~ 96 (115)
T 3beg_B 92 GPRSP 96 (115)
T ss_dssp C----
T ss_pred CCCCC
Confidence 65443
No 301
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=116.88 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=70.9
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEe-eccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV-QRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
...+.++|||+|||..+++++|+++|+.| |.|..+.. .+.+|||||+|.+.++|.+|++.|||..|+|++|+|.|++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34456899999999999999999999999 99988711 1238999999999999999999999999999999999998
Q ss_pred CCCC
Q 014839 332 KPTP 335 (417)
Q Consensus 332 ~~~~ 335 (417)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 302
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=115.47 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
.....++|||+|||+++++++|+++|+.| .|.+|+++.+. .+|||||+|.+.++|.+|++ |||..|.|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 99999999873 36899999999999999999 999999999999999
Q ss_pred cccCC
Q 014839 120 AYASS 124 (417)
Q Consensus 120 ~~~~~ 124 (417)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87653
No 303
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=121.15 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=68.0
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeec------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
.+.++|||+|||.++|+++|+++|+.| |.|.. .++. .+|||||+|.+.++|.+|++ |||..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL--FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH--HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 345899999999999999999999999 97776 3333 38999999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 014839 329 WGSKPTP 335 (417)
Q Consensus 329 ~a~~~~~ 335 (417)
|++++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987543
No 304
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.3e-16 Score=114.72 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=65.3
Q ss_pred eEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 259 ~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
+|||+|||.++++++|+++|+.| |.|.++.+.++ +|+|||+|.+.++|.+|++ |||..|+|++|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999 99999999876 5899999999999999998 8999999999999985
No 305
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=5.9e-16 Score=114.85 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=69.5
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
.++|||+|||.++++++|+++|++| .|.++++.+.+|||||+|.+.++|.+|++.|||..++|++|+|.|+...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4789999999999999999999998 6888888888999999999999999999999999999999999998654
No 306
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=124.98 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCe----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTC----SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v----~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
....+|||+|||++++++||+++|+.||.| .+|+|++| .+|+++|||||+|.+.++|.+|++. ++..+.||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 446789999999999999999999999975 68999998 5899999999999999999999995 99999999999
Q ss_pred EEEccC
Q 014839 206 CNWAAK 211 (417)
Q Consensus 206 v~~~~~ 211 (417)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 307
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=5.2e-17 Score=121.24 Aligned_cols=75 Identities=28% Similarity=0.460 Sum_probs=67.4
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.+ |.+|++.|||..|+|++|+|+|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 579999999999999999999999 99999999865 789999999999 999999999999999999999998
Q ss_pred CCCC
Q 014839 332 KPTP 335 (417)
Q Consensus 332 ~~~~ 335 (417)
+...
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 308
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=125.30 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=70.5
Q ss_pred CCCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 253 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 253 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
...+.++|||+|||..+++++|+++|+.| |.|.+++++++ +|||||+|.+.++|.+|++.|||..|+|++|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456899999999999999999999999 99999999876 79999999999999999999999999999999
Q ss_pred Eeec
Q 014839 327 CSWG 330 (417)
Q Consensus 327 v~~a 330 (417)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9985
No 309
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.1e-18 Score=131.75 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=80.9
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~--------v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 199 (417)
+..+.++|||+|||+++++++|+++|+.||.|.+ +++++|+.+++++|||||+|.+.++|.+|++.|+|..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 99999988999999999999999999999999999999
Q ss_pred CCeEEEEEEccCCCC
Q 014839 200 GNRQIRCNWAAKGAT 214 (417)
Q Consensus 200 ~g~~i~v~~~~~~~~ 214 (417)
.|++|+|.++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987643
No 310
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=4.9e-16 Score=123.40 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=70.4
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
.++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4789999999999999999999999 99999999876 789999999999999999 79999999999999999
Q ss_pred CCCC
Q 014839 331 SKPT 334 (417)
Q Consensus 331 ~~~~ 334 (417)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 311
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=118.70 Aligned_cols=82 Identities=16% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014839 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (417)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v 206 (417)
....+.++|||+|||+++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.++|..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 357899999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014839 207 NWAAKGA 213 (417)
Q Consensus 207 ~~~~~~~ 213 (417)
.++.++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9997654
No 312
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=122.10 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCc-ceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPL-EGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v-~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
....+.++|||+|||+++++++|+++|+.||.| ..|+++.++ .+|||||+|.+.++|.+||+. |+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 345677899999999999999999999999999 899998865 578999999999999999975 999999999999
Q ss_pred EecccC
Q 014839 118 NWAYAS 123 (417)
Q Consensus 118 ~~~~~~ 123 (417)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 313
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=2e-15 Score=118.18 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=68.0
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCE-EEEEecCHHHHHHHHHHhcCCCCCC--ceEEEEecccCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY-GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASS 124 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~-afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~~~~~ 124 (417)
..|||+|||+.+++++|+++|++||.|.+|+++.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.++.+..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 44679999999999999999999999999999763 486 9999999999999999999999987 689999997664
No 314
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7.5e-16 Score=121.01 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCE-EEEEecCHHHHHHHHHHhcCCCCCC--ceEEEEecc
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY-GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~-afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~~ 121 (417)
+.-.+|||+||++.+++++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 444568899999999999999999999999999888754 566 9999999999999999999999998 899999998
Q ss_pred cCC
Q 014839 122 ASS 124 (417)
Q Consensus 122 ~~~ 124 (417)
...
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 654
No 315
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=116.83 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=69.8
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEE-EEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~-v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...++|||+|||+++|+++|+++|+.| |.|.+ |+++.+ +|||||+|.+.++|.+|++. |+..|+||.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345799999999999999999999999 99987 888754 79999999999999999998 9999999999999
Q ss_pred ecCCCC
Q 014839 329 WGSKPT 334 (417)
Q Consensus 329 ~a~~~~ 334 (417)
++.+..
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 316
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=1.3e-16 Score=122.01 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=76.1
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
...++|||+|||+++++++|+++|+.||.|.++++++|+ +|+++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 445789999999999999999999999999999999997 99999999999999999999999 999999999999999
Q ss_pred cCCC
Q 014839 210 AKGA 213 (417)
Q Consensus 210 ~~~~ 213 (417)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 317
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=1.7e-17 Score=159.37 Aligned_cols=78 Identities=18% Similarity=0.423 Sum_probs=72.7
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
.+.++|||+|||+.+|+++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|.+||+.|||..|+|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999999999999999999 99999999876 7999999999999999999999999999999999
Q ss_pred ecCCCC
Q 014839 329 WGSKPT 334 (417)
Q Consensus 329 ~a~~~~ 334 (417)
|+++..
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998654
No 318
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=2.7e-16 Score=123.70 Aligned_cols=81 Identities=23% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCee--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~--~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
.....++|||+|||+++++++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34456789999999999999999999999 566 899999976 9999999999999999999999 578999999999
Q ss_pred EEEccC
Q 014839 206 CNWAAK 211 (417)
Q Consensus 206 v~~~~~ 211 (417)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 319
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=7.5e-16 Score=114.12 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=67.3
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcC--cc-------ceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALC--VG-------TIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~--~G-------~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
+.++|||+|||.++++++|+++|+.|+ .| .|.++++.+++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 458999999999999999999999981 02 8999999999999999999999999999 9999999999999
Q ss_pred Eee
Q 014839 327 CSW 329 (417)
Q Consensus 327 v~~ 329 (417)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 320
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=4.6e-16 Score=115.45 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCC
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~ 124 (417)
+.+++|||+|||+++++++|+++|++| .|.+|++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 457889999999999999999999999 99999884 678999999999999999999999999999999999986543
No 321
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=4.2e-16 Score=122.31 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=69.1
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccc---eEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeE
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGT---IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 326 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~---i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 326 (417)
...++|||+|||+++|+++|+++|+.| |. |..|+++.+ +|||||+|.+.++|.+|++ |||..|+||.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC--TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS--CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999 88 899999865 7899999999999999999 899999999999
Q ss_pred EeecCC
Q 014839 327 CSWGSK 332 (417)
Q Consensus 327 v~~a~~ 332 (417)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 322
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=114.89 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=64.5
Q ss_pred ceEEeeCCCccc------cHHHHHHhhhhcCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe-eeE
Q 014839 258 TTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK-PIK 326 (417)
Q Consensus 258 ~~l~V~nLp~~~------t~~~L~~~F~~~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~ 326 (417)
++|||+|||..+ |+++|+++|++| |.|.++.++++ +|||||+|.+.++|.+|++.|||..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999 99999999854 79999999999999999999999999999 888
Q ss_pred Ee
Q 014839 327 CS 328 (417)
Q Consensus 327 v~ 328 (417)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 323
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=116.76 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=68.1
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
...++|||+|||+++|+++|+++|+.| |.+ +|+|+.+ +|||||+|.+.++|.+|++ +|+..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL--NPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC--CCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--Cce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345799999999999999999999999 854 9998866 7899999999999999995 699999999999999
Q ss_pred cCCCC
Q 014839 330 GSKPT 334 (417)
Q Consensus 330 a~~~~ 334 (417)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 324
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=8.5e-16 Score=120.90 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=71.3
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
.+.++|||+|+ ++|+++|+++|+.| |.|.+|.+.+.+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 45589999996 69999999999999 999999999999999999999999999999999999999999999998754
No 325
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-16 Score=113.66 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=66.4
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
++|||+|||.++++++|+++|++| |.|.++.+.++ +|+|||+|.+.++|.+|++.++ ..++|++|+|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999 99999999876 6899999999999999999999 9999999999986
No 326
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.1e-16 Score=118.03 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=68.8
Q ss_pred CCCCCeEEE--cCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCC-----CCceEE
Q 014839 44 ASTCRSVYV--GNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI-----FGQPIK 116 (417)
Q Consensus 44 ~~~~~~v~v--~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i-----~g~~l~ 116 (417)
..++++||| +||++++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|++.|||+.+ .|++|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 345788999 77999999999999999999999998864 478999999999999999999999987 578899
Q ss_pred EEecccC
Q 014839 117 VNWAYAS 123 (417)
Q Consensus 117 v~~~~~~ 123 (417)
|.++...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9887643
No 327
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=7.7e-16 Score=129.62 Aligned_cols=83 Identities=29% Similarity=0.373 Sum_probs=78.4
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~ 208 (417)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +++++|||||+|.+.++|.+|++.++|..+.|+.|+|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014839 209 AAKG 212 (417)
Q Consensus 209 ~~~~ 212 (417)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9754
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=113.08 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=62.9
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCe--eCCeeeEEeec
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARI--LCGKPIKCSWG 330 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~v~~a 330 (417)
.++.++|||+|||+++|+++|+++|++| |.|.+|+++++ ||||||+|.+.++|.+ |+|.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3455899999999999999999999999 99999999986 9999999999999984 45664 56999999999
Q ss_pred CCCC
Q 014839 331 SKPT 334 (417)
Q Consensus 331 ~~~~ 334 (417)
+++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8653
No 329
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=9.2e-16 Score=122.72 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCC---cceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~---v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
...+.++|||+|||+++++++|+++|+.||. |.+|+++.++ ++|||||+|.+.++|.+|++ +|+..|.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 4556789999999999999999999999999 8999999875 36899999999999999998 999999999999
Q ss_pred EEecc
Q 014839 117 VNWAY 121 (417)
Q Consensus 117 v~~~~ 121 (417)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99874
No 330
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=9.4e-16 Score=119.78 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCce-----EEEEe
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP-----IKVNW 119 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~-----l~v~~ 119 (417)
...++|||+|||+++++++|+++|+.||+|..|+++.+ |||||+|.+.++|.+||+.|||..|.|+. |+|..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45688999999999999999999999999999999776 89999999999999999999999999988 77877
Q ss_pred cccCC
Q 014839 120 AYASS 124 (417)
Q Consensus 120 ~~~~~ 124 (417)
..+..
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66543
No 331
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=116.67 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=66.7
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
...+|||+|||+++|+++|+++|+.| .|.+|+|+.+ +|||||+|.+.++|.+|+ .||+..|+||.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 44799999999999999999999998 5889999865 799999999999999999 68999999999999887
Q ss_pred CC
Q 014839 331 SK 332 (417)
Q Consensus 331 ~~ 332 (417)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 332
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=113.11 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=70.0
Q ss_pred CCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 014839 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (417)
Q Consensus 130 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~ 209 (417)
...++|||+|||+++++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++ ++|..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 455799999999999999999999999999987 55666665 99999999999999999 9999999999999988
Q ss_pred cCCC
Q 014839 210 AKGA 213 (417)
Q Consensus 210 ~~~~ 213 (417)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 333
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.3e-15 Score=132.82 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=72.4
Q ss_pred CCccceEEeeCCCccc---------cHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee----
Q 014839 254 NPQYTTVYVGNLSSEV---------TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---- 320 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~---- 320 (417)
....++|||+||+..+ ++++|+++|++| |.|.+|+|+.+||||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 3456899999999998 799999999999 9999999999999999999999999999999999999
Q ss_pred --------CCeeeEEeecCCCCC
Q 014839 321 --------CGKPIKCSWGSKPTP 335 (417)
Q Consensus 321 --------~g~~l~v~~a~~~~~ 335 (417)
.|+.|.|.||++...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp STTGGGGGGSCCCEEEECC----
T ss_pred cccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 334
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.2e-16 Score=123.63 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=66.8
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeec------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...++|||+|||+++|+++|+++|+.| |.|.++.++. .+|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL--DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS--CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345899999999999999999999999 9998744432 27999999999999999999 99999999999999
Q ss_pred ecCC
Q 014839 329 WGSK 332 (417)
Q Consensus 329 ~a~~ 332 (417)
++++
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 335
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=8.7e-16 Score=118.40 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCC---cceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~---v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
...+.++|||+|||+++++++|+++|+.||. |.+|+++.++ ++|||||+|.+.++|.+|++ +|+..|.|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999987 8999998764 47899999999999999998 999999999999
Q ss_pred EEeccc
Q 014839 117 VNWAYA 122 (417)
Q Consensus 117 v~~~~~ 122 (417)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998754
No 336
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=126.67 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR--V---MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~--~---~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 202 (417)
...+.++|||+|||+++++++|+++|+.||.|..+. + ++...+|+++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999987741 1 11125789999999999999999999999999999999
Q ss_pred EEEEEEccCCCC
Q 014839 203 QIRCNWAAKGAT 214 (417)
Q Consensus 203 ~i~v~~~~~~~~ 214 (417)
.|.|.|+.....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 337
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=6.1e-17 Score=126.99 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=72.8
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEE--------EEeecc------ccEEEEEeCCHHHHHHHHHHhCCCee
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQRD------KGFGFVRYSTHPEAALAIQMGNARIL 320 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~--------v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~ 320 (417)
.+.++|||+|||.++++++|+++|+.| |.|.. |++..+ +|||||+|.+.++|.+|++.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 345789999999999999999999999 99998 888765 68999999999999999999999999
Q ss_pred CCeeeEEeecCCCCCC
Q 014839 321 CGKPIKCSWGSKPTPP 336 (417)
Q Consensus 321 ~g~~l~v~~a~~~~~~ 336 (417)
.|++|+|.|++++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876543
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=4.9e-15 Score=116.50 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
......++|||+|| ++++++|+++|+.||+|.+|++. +++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 34456889999996 79999999999999999999985 678899999999999999999999999999999999998
Q ss_pred cCCC
Q 014839 122 ASSQ 125 (417)
Q Consensus 122 ~~~~ 125 (417)
+...
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=5.1e-15 Score=126.51 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHh--cCCCCCCceEEEEecccCCCCC------CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEe
Q 014839 94 DRRSAALAIVTL--NGRHIFGQPIKVNWAYASSQRE------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (417)
Q Consensus 94 ~~~~A~~Al~~l--~g~~i~g~~l~v~~~~~~~~~~------~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~ 165 (417)
+.+.+..|+... ....+.+...+|.......... .....++|||+|||+++++++|+++|+.||.|.+|+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667777888655 3445566666676653222111 11235789999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 014839 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (417)
Q Consensus 166 ~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~~ 212 (417)
++. +++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+....
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 984 5899999999999999999999854 56999999999998654
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=1.6e-15 Score=112.32 Aligned_cols=73 Identities=22% Similarity=0.498 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhcc----C-------CcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~----G-------~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
..+.++|||+|||+++++++|+++|+.| | +|.++++.++ +|||||+|.+.++|.+|+ .|||..|.|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3567899999999999999999999999 8 8998888654 789999999999999999 899999999
Q ss_pred ceEEEEe
Q 014839 113 QPIKVNW 119 (417)
Q Consensus 113 ~~l~v~~ 119 (417)
+.|+|++
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999975
No 341
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=7.5e-16 Score=110.61 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=64.9
Q ss_pred eEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 259 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 259 ~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
+|||+|||.++++++|+++|+.| |.|.++.+.++ +|+|||+|.+.++|.+|++. ++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 59999999999999999999999 99999999765 78999999999999999985 899999999999875
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=122.64 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=69.9
Q ss_pred CCccceEEeeCCCccccHHHHHHhhhhcCccceEE--------EEee---ccccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 254 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQ---RDKGFGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~--------v~i~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
..+.++|||+|||+.+|+++|+++|+.| |.|.. +++. +.+|||||+|.+.++|.+|++.|||..|+|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY--VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG--CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3455899999999999999999999999 98765 3333 338999999999999999999999999999
Q ss_pred eeeEEeecCCCCC
Q 014839 323 KPIKCSWGSKPTP 335 (417)
Q Consensus 323 ~~l~v~~a~~~~~ 335 (417)
++|+|.|+++..+
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976543
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=111.85 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=65.6
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 334 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 334 (417)
+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.++... ...+.|++|+|.|++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 34789999999999999999999999 99999999877 99999999999999764321 335699999999998764
Q ss_pred C
Q 014839 335 P 335 (417)
Q Consensus 335 ~ 335 (417)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=8e-15 Score=111.91 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCCCceEEECCCCc-----cCCHHHHHHhhcCCCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014839 129 TSGHFNVFVGDLSP-----EVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (417)
Q Consensus 129 ~~~~~~l~v~nlp~-----~~~e~~l~~~f~~~G~v~~v~~~~d~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 202 (417)
..++++|+|.||.. +-++++|++.|++||.|.++.|++++.+ ++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678899999963 2368999999999999999999998654 68999999999999999999999999999999
Q ss_pred EEEEEEccC
Q 014839 203 QIRCNWAAK 211 (417)
Q Consensus 203 ~i~v~~~~~ 211 (417)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 345
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.6e-15 Score=133.19 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=69.8
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEE
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 327 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G--~i~~v~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 327 (417)
..++|||+|||+++|+++|+++|+.| | .|.+|+|+++ ||||||+|.+.++|.+||+.|||..|+|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT--TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH--CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 44789999999999999999999999 9 9999999876 689999999999999999999999999999999
Q ss_pred eecCC
Q 014839 328 SWGSK 332 (417)
Q Consensus 328 ~~a~~ 332 (417)
.|+++
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=6.5e-15 Score=109.20 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=63.0
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEE
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW--LGNRQIR 205 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--~~g~~i~ 205 (417)
...+..+|||+|||+++++++|+++|++||.|.+++++++ +||||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456689999999999999999999999999999999864 79999999999999984 45554 5699999
Q ss_pred EEEccCCC
Q 014839 206 CNWAAKGA 213 (417)
Q Consensus 206 v~~~~~~~ 213 (417)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997653
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.7e-15 Score=115.72 Aligned_cols=76 Identities=21% Similarity=0.451 Sum_probs=70.2
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
...++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++ ++..|+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 345899999999999999999999999 99999999885 6999999999999999998 99999999999999
Q ss_pred cCCCC
Q 014839 330 GSKPT 334 (417)
Q Consensus 330 a~~~~ 334 (417)
+.++.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87654
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=7e-15 Score=123.76 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEe
Q 014839 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 119 (417)
...+.++|||+|||+++++++|+++|+.||+|.+|.+..++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999998864 468999999999999999999999999999999999
Q ss_pred cccCC
Q 014839 120 AYASS 124 (417)
Q Consensus 120 ~~~~~ 124 (417)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86543
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=113.52 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCCCceEEECCCCccCCHHHHHHhhcCCCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014839 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (417)
Q Consensus 129 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~v~~v~~~~d~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~ 205 (417)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.++ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888888777 7999999999999999999999883 36777777
Q ss_pred EEEcc
Q 014839 206 CNWAA 210 (417)
Q Consensus 206 v~~~~ 210 (417)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66543
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-15 Score=112.11 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecccCC
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~ 124 (417)
.++++|||+|||+++++++|+++|+.||+|.+|+++.+ ++|||||+|.+.++|.+++. ....+.|+.|+|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 45789999999999999999999999999999999865 68999999999999975432 1234589999999987765
Q ss_pred CCC
Q 014839 125 QRE 127 (417)
Q Consensus 125 ~~~ 127 (417)
...
T Consensus 80 ~~~ 82 (88)
T 1wf0_A 80 NSN 82 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 351
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.2e-15 Score=122.50 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=68.4
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 330 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 330 (417)
..++|||+|||+++|+++|+++|+.| | |.+|+|+.+ +|||||+|.+.++|.+|+ .+|+..|+||.|+|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~--G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPL--N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSC--C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34789999999999999999999999 8 679999866 799999999999999999 78999999999999998
Q ss_pred CCCC
Q 014839 331 SKPT 334 (417)
Q Consensus 331 ~~~~ 334 (417)
.++.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=116.70 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCc----ceEEEEecC---CCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPL----EGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v----~~v~i~~~~---~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
.+.++|||+|||++++++||+++|+.||+| ..|+|+.++ ++|||||+|.+.++|.+|++ .|+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEE
Confidence 456899999999999999999999999975 689998764 36899999999999999997 5999999999999
Q ss_pred Eecc
Q 014839 118 NWAY 121 (417)
Q Consensus 118 ~~~~ 121 (417)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-14 Score=110.17 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCccCC-----------HHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCC
Q 014839 42 FDASTCRSVYVGNIHPQVT-----------NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI 110 (417)
Q Consensus 42 ~~~~~~~~v~v~nLp~~~~-----------e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i 110 (417)
..+.++++|+|+||....+ +++|+++|++||+|.+|.|.....+|||||+|.+.++|.+|++.|||..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3566789999999944332 68999999999999999774445689999999999999999999999999
Q ss_pred CCceEEEEecccCCC
Q 014839 111 FGQPIKVNWAYASSQ 125 (417)
Q Consensus 111 ~g~~l~v~~~~~~~~ 125 (417)
.|+.|+|.++.+...
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999876543
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.3e-14 Score=109.32 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=66.9
Q ss_pred ccceEEeeCCCc-----cccHHHHHHhhhhcCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 014839 256 QYTTVYVGNLSS-----EVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCGK 323 (417)
Q Consensus 256 ~~~~l~V~nLp~-----~~t~~~L~~~F~~~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 323 (417)
+.++|+|.||.. +-++++|+++|++| |.|.+|.|+++ +|+|||+|.+.++|.+|++.|||+.|+||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 457899999963 23789999999999 99999999864 69999999999999999999999999999
Q ss_pred eeEEeecCC
Q 014839 324 PIKCSWGSK 332 (417)
Q Consensus 324 ~l~v~~a~~ 332 (417)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999863
No 355
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=6.4e-15 Score=115.88 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=66.3
Q ss_pred CccceEEeeCCCccccHHHHHHhhhhcCccceE-EEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEe
Q 014839 255 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE-DVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 328 (417)
Q Consensus 255 ~~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~-~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 328 (417)
...++|||+|||+++|+++|+++|+.| +.+. +|+|+.+ +|||||+|.+.++|.+|++. ++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 345789999999999999999999999 6443 8998865 79999999999999999985 7899999999998
Q ss_pred ecCC
Q 014839 329 WGSK 332 (417)
Q Consensus 329 ~a~~ 332 (417)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-13 Score=107.47 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCccceEEeeCCCccc-----------cHHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCee
Q 014839 254 NPQYTTVYVGNLSSEV-----------TSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARIL 320 (417)
Q Consensus 254 ~~~~~~l~V~nLp~~~-----------t~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~ 320 (417)
..+.++|+|.||.... ++++|+++|++| |.|.+|.|... +|||||+|.+.++|.+|++.|||+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456899999994332 268999999999 99999977432 89999999999999999999999999
Q ss_pred CCeeeEEeecCCCCC
Q 014839 321 CGKPIKCSWGSKPTP 335 (417)
Q Consensus 321 ~g~~l~v~~a~~~~~ 335 (417)
+||+|+|.|+.+...
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987544
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=109.57 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec-------CCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK-------DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~-------~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
...+++|||+|||+++++++|+++|++||+|. +.++.+ +++|||||+|.+.++|.+|++.|++ +.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 45678999999999999999999999999999 777654 4479999999999999999998842 5566665
Q ss_pred EEe
Q 014839 117 VNW 119 (417)
Q Consensus 117 v~~ 119 (417)
+..
T Consensus 82 ~~~ 84 (114)
T 2dnl_A 82 CVS 84 (114)
T ss_dssp EEC
T ss_pred ecc
Confidence 553
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=1.4e-13 Score=117.53 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=67.3
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
.++|||+|||+++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.++ ..|+|++|+|.|++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 3789999999999999999999999 99999999874 7999999999999999998764 59999999999976
Q ss_pred C
Q 014839 332 K 332 (417)
Q Consensus 332 ~ 332 (417)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=4e-14 Score=123.47 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCccC---------CHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCC---
Q 014839 43 DASTCRSVYVGNIHPQV---------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI--- 110 (417)
Q Consensus 43 ~~~~~~~v~v~nLp~~~---------~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i--- 110 (417)
....+++|||+|||..+ +|++|+++|++||+|.+|+++. ++|||||+|.+.++|..|++.|+|..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 35678999999999998 7999999999999999999986 468999999999999999999999999
Q ss_pred ---------CCceEEEEecccCC
Q 014839 111 ---------FGQPIKVNWAYASS 124 (417)
Q Consensus 111 ---------~g~~l~v~~~~~~~ 124 (417)
.|+.|.|+|+....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.7e-14 Score=109.77 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=65.0
Q ss_pred ceEEeeCC----CccccHHHHHHhhhhcCccceEEEEeecc------ccEEEEEeCC----HHH----HHHHHH--HhCC
Q 014839 258 TTVYVGNL----SSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYST----HPE----AALAIQ--MGNA 317 (417)
Q Consensus 258 ~~l~V~nL----p~~~t~~~L~~~F~~~~~G~i~~v~i~~~------~g~afV~f~~----~~~----A~~A~~--~l~g 317 (417)
..|||+|| |+.+++++|+++|+.| |.|.+|.++.| +|||||+|.+ +++ |.+|+. .|+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 57999999 9999999999999999 99999999987 7999999996 433 889988 7899
Q ss_pred CeeCCeeeEEeecC
Q 014839 318 RILCGKPIKCSWGS 331 (417)
Q Consensus 318 ~~~~g~~l~v~~a~ 331 (417)
..|+||+|+|.+.+
T Consensus 81 ~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 81 CFIMGFKFEVILNK 94 (136)
T ss_dssp EEETTEEEEEEECC
T ss_pred CeecCcEEEEEECc
Confidence 99999999999865
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1.2e-13 Score=105.43 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCceEEECCC--CccCC--------HHHHHHhhcCCCCeeEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 014839 130 SGHFNVFVGDL--SPEVT--------DATLFACFSVFPTCSDARVMWDQKT--GRSRGFGFVSFRNQEDAQSAINDLNGK 197 (417)
Q Consensus 130 ~~~~~l~v~nl--p~~~~--------e~~l~~~f~~~G~v~~v~~~~d~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (417)
.+++.|.|.|+ |..+. ++||++.|++||.|.+++|++++.+ ++++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778999998 44443 3689999999999999999988654 468999999999999999999999999
Q ss_pred eeCCeEEEEEEccC
Q 014839 198 WLGNRQIRCNWAAK 211 (417)
Q Consensus 198 ~~~g~~i~v~~~~~ 211 (417)
.++||.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.5e-13 Score=104.83 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=66.0
Q ss_pred CccceEEeeCC--Cccc--------cHHHHHHhhhhcCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhC
Q 014839 255 PQYTTVYVGNL--SSEV--------TSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGN 316 (417)
Q Consensus 255 ~~~~~l~V~nL--p~~~--------t~~~L~~~F~~~~~G~i~~v~i~~~--------~g~afV~f~~~~~A~~A~~~l~ 316 (417)
.++++|.|.|+ |..+ .+++|+++|++| |.|.+|.|+++ +|++||+|.+.++|.+|++.||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 35578999998 3344 347999999999 99999999865 6999999999999999999999
Q ss_pred CCeeCCeeeEEeecC
Q 014839 317 ARILCGKPIKCSWGS 331 (417)
Q Consensus 317 g~~~~g~~l~v~~a~ 331 (417)
|+.|+||.|+|.|..
T Consensus 81 G~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 81 GRKFANRVVVTKYCD 95 (105)
T ss_dssp TCEETTEECEEEEEC
T ss_pred CCEeCCCEEEEEEeC
Confidence 999999999999874
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.5e-13 Score=106.89 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCceEEECCCCc--cC---CHHHHHHhhcCCCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014839 131 GHFNVFVGDLSP--EV---TDATLFACFSVFPTCSDARVMWDQK----TGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (417)
Q Consensus 131 ~~~~l~v~nlp~--~~---~e~~l~~~f~~~G~v~~v~~~~d~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 201 (417)
++++|+|.|+-. ++ .++||++.|++||.|.+|.|++++. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 22 3689999999999999999998864 45788999999999999999999999999999
Q ss_pred eEEEEEEccC
Q 014839 202 RQIRCNWAAK 211 (417)
Q Consensus 202 ~~i~v~~~~~ 211 (417)
|.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=6.3e-14 Score=106.84 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=64.4
Q ss_pred ECCCCccCCHHHHHHhh------------cCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014839 137 VGDLSPEVTDATLFACF------------SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (417)
Q Consensus 137 v~nlp~~~~e~~l~~~f------------~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i 204 (417)
+.||+..+++++|++.| ++||.|.++.|+++. +++++|||||+|.+.++|.+|++.|||..++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56778888888777666 999999999999884 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 014839 205 RCNWA 209 (417)
Q Consensus 205 ~v~~~ 209 (417)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2e-12 Score=97.22 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=62.2
Q ss_pred ceEEeeCCC-------ccccHHHHHHhhhhcCccceEEEEeec-cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEee
Q 014839 258 TTVYVGNLS-------SEVTSVDLHRHFHALCVGTIEDVRVQR-DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 329 (417)
Q Consensus 258 ~~l~V~nLp-------~~~t~~~L~~~F~~~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 329 (417)
.+|.|.-.. ..+++++|+++|++| |.|.+|.+++ .+|||||+|.+.++|.+|++.+++ +.|++|+|.|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEE
Confidence 456665544 468999999999999 9999999984 589999999999999999998554 6899999999
Q ss_pred cCCCC
Q 014839 330 GSKPT 334 (417)
Q Consensus 330 a~~~~ 334 (417)
++++.
T Consensus 87 a~~~~ 91 (100)
T 2d9o_A 87 LEGQP 91 (100)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98664
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=1.8e-13 Score=104.36 Aligned_cols=67 Identities=25% Similarity=0.474 Sum_probs=60.0
Q ss_pred eeCCCccccHHHHHHhh------------hhcCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 014839 262 VGNLSSEVTSVDLHRHF------------HALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKP 324 (417)
Q Consensus 262 V~nLp~~~t~~~L~~~F------------~~~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 324 (417)
+.||+..+++++|+++| ++| |.|.+|.|+++ +|+|||+|.+.++|.+|++.|||+.|+||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~--G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY--GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC--CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777788887777666 999 99999999876 799999999999999999999999999999
Q ss_pred eEEeec
Q 014839 325 IKCSWG 330 (417)
Q Consensus 325 l~v~~a 330 (417)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=7.5e-13 Score=102.91 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.4
Q ss_pred ccceEEeeCCCc--cc---cHHHHHHhhhhcCccceEEEEeecc----------ccEEEEEeCCHHHHHHHHHHhCCCee
Q 014839 256 QYTTVYVGNLSS--EV---TSVDLHRHFHALCVGTIEDVRVQRD----------KGFGFVRYSTHPEAALAIQMGNARIL 320 (417)
Q Consensus 256 ~~~~l~V~nLp~--~~---t~~~L~~~F~~~~~G~i~~v~i~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~ 320 (417)
++++|+|.|+-. ++ .++||++.|++| |.|.+|.|+++ +|++||+|.+.++|.+|++.|||+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 457899999943 22 468999999999 99999999875 38999999999999999999999999
Q ss_pred CCeeeEEeecC
Q 014839 321 CGKPIKCSWGS 331 (417)
Q Consensus 321 ~g~~l~v~~a~ 331 (417)
+||.|+|.|..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999874
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=6.2e-13 Score=122.35 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=69.9
Q ss_pred CCCCccceEEeeC--CCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee---CCe--e
Q 014839 252 ENNPQYTTVYVGN--LSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---CGK--P 324 (417)
Q Consensus 252 ~~~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~--~ 324 (417)
....+..+|||+| |++.+|+++|+++|++| |.|.+|.+.++||||||+|.+.++|.+|++.|||.++ .|+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3455678999999 57899999999999999 9999999999999999999999999999999999987 345 6
Q ss_pred eEEeecC
Q 014839 325 IKCSWGS 331 (417)
Q Consensus 325 l~v~~a~ 331 (417)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8889885
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-12 Score=96.32 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCC-------ccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEE
Q 014839 45 STCRSVYVGNIH-------PQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (417)
Q Consensus 45 ~~~~~v~v~nLp-------~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 117 (417)
...++|.|.-.+ .++++++|+++|++||+|.+|.++ .+++|||||+|.+.++|.+|++.++ .+.|++|+|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V 84 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKI 84 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEE
Confidence 346678887655 458999999999999999999987 4678999999999999999998644 467999999
Q ss_pred EecccCCCC
Q 014839 118 NWAYASSQR 126 (417)
Q Consensus 118 ~~~~~~~~~ 126 (417)
.|+.+....
T Consensus 85 ~~a~~~~~~ 93 (100)
T 2d9o_A 85 SWLEGQPQD 93 (100)
T ss_dssp ECSSCCCCC
T ss_pred EEccCCCCC
Confidence 998766543
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=1.4e-12 Score=100.60 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=65.3
Q ss_pred ccceEEeeCCCcc----------ccHHHHHHhhhhcCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 014839 256 QYTTVYVGNLSSE----------VTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGK 323 (417)
Q Consensus 256 ~~~~l~V~nLp~~----------~t~~~L~~~F~~~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 323 (417)
++++|.|.|+=.. -.++||+++|++| |.|.+|.|.++ +|++||+|.+.++|.+|++.|||+.|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4578999988332 2357899999999 99999999887 79999999999999999999999999999
Q ss_pred eeEEeecC
Q 014839 324 PIKCSWGS 331 (417)
Q Consensus 324 ~l~v~~a~ 331 (417)
.|+|.|..
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999975
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.7e-12 Score=100.11 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCccC----------CHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCce
Q 014839 45 STCRSVYVGNIHPQV----------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~----------~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 114 (417)
.+++.|.|.|+=... -++||++.|++||.|.+|++.++..+|++||+|.+.++|.+|++.|||..|.|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457889999984322 2468899999999999999988777899999999999999999999999999999
Q ss_pred EEEEecc
Q 014839 115 IKVNWAY 121 (417)
Q Consensus 115 l~v~~~~ 121 (417)
|+|.++.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999975
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.2e-12 Score=115.68 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=67.0
Q ss_pred CCCCCCCeEEEcC--CCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCC---Cc--e
Q 014839 42 FDASTCRSVYVGN--IHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF---GQ--P 114 (417)
Q Consensus 42 ~~~~~~~~v~v~n--Lp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~---g~--~ 114 (417)
....++++|||+| |++.++|++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|++.|||+.+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3456788999999 689999999999999999999887754 6799999999999999999999999873 45 5
Q ss_pred EEEEecc
Q 014839 115 IKVNWAY 121 (417)
Q Consensus 115 l~v~~~~ 121 (417)
+.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777763
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-11 Score=87.04 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=64.2
Q ss_pred CCccceEEeeCCC----ccccH----HHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeee
Q 014839 254 NPQYTTVYVGNLS----SEVTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 325 (417)
Q Consensus 254 ~~~~~~l~V~nLp----~~~t~----~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 325 (417)
.|+.-+|+|.-.+ .+... .+|.+.|++| |.|..+++..++ +||+|.+.++|.+|++ |||..++||.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 4556788887766 23333 6799999999 999999999986 8999999999999998 99999999999
Q ss_pred EEeecCCC
Q 014839 326 KCSWGSKP 333 (417)
Q Consensus 326 ~v~~a~~~ 333 (417)
+|.++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=7.6e-11 Score=90.85 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=69.9
Q ss_pred CCCCCccceEEeeCCCcc-ccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCC-HHHHHHHHHHhC--CCeeCCeeeE
Q 014839 251 PENNPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYST-HPEAALAIQMGN--ARILCGKPIK 326 (417)
Q Consensus 251 ~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~g~~l~ 326 (417)
....++++.|+|+||+.. +++++|+++|+.| |.|.+|.+.++...|||+|.+ .++|..|++.|+ +..|+|..++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 344566789999999999 9999999999999 999999999999999999999 899999999994 7789998888
Q ss_pred Eeec
Q 014839 327 CSWG 330 (417)
Q Consensus 327 v~~a 330 (417)
++..
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8653
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.6e-10 Score=83.43 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=64.2
Q ss_pred CCCCccceEEeeCCCcc-----ccH----HHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 252 ENNPQYTTVYVGNLSSE-----VTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 252 ~~~~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
.-.|+.-+|+|.-++.. +.. .+|.+.|+.| |.|..+++..++ +||+|.+.++|.+|++ |||..++|
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 34566678999888632 322 5699999999 999999999997 9999999999999998 99999999
Q ss_pred eeeEEeecC
Q 014839 323 KPIKCSWGS 331 (417)
Q Consensus 323 ~~l~v~~a~ 331 (417)
|.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998854
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=4.2e-10 Score=80.95 Aligned_cols=75 Identities=28% Similarity=0.275 Sum_probs=63.2
Q ss_pred CCCCceEEECCCCc----cCCH----HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014839 129 TSGHFNVFVGDLSP----EVTD----ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (417)
Q Consensus 129 ~~~~~~l~v~nlp~----~~~e----~~l~~~f~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 200 (417)
.++..+|+|.-.+. +.-. .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+|++ |+|..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 35566788877662 2333 6789999999999999999773 8999999999999999 9999999
Q ss_pred CeEEEEEEccCC
Q 014839 201 NRQIRCNWAAKG 212 (417)
Q Consensus 201 g~~i~v~~~~~~ 212 (417)
||.|+|+++++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998764
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.5e-09 Score=83.52 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCcc-CCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecC-HHHHHHHHHHhc--CCCCCCceEEEEe
Q 014839 44 ASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFD-RRSAALAIVTLN--GRHIFGQPIKVNW 119 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~-~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~-~~~A~~Al~~l~--g~~i~g~~l~v~~ 119 (417)
-.....|+|+||+++ +++++|+++|+.||+|..|.+.++.. .|||+|.+ .++|..|++.++ +..|.|..++++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 345678999999999 99999999999999999999977655 79999999 899999999994 7889999888876
Q ss_pred cc
Q 014839 120 AY 121 (417)
Q Consensus 120 ~~ 121 (417)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=8.3e-09 Score=90.19 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=61.1
Q ss_pred CCHHHHHHhhcCCCCeeEEEEeecC----CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 014839 144 VTDATLFACFSVFPTCSDARVMWDQ----KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (417)
Q Consensus 144 ~~e~~l~~~f~~~G~v~~v~~~~d~----~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~i~v~~~~~ 211 (417)
-.+++|++.|++||.|.++.|.++. .+++++|++||+|.+.++|.+|++.|+|..+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999998654 3458999999999999999999999999999999999999753
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.1e-09 Score=77.60 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCcc-----CCH----HHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEE
Q 014839 46 TCRSVYVGNIHPQ-----VTN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (417)
Q Consensus 46 ~~~~v~v~nLp~~-----~~e----~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 116 (417)
+-.||+|.-++.+ +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+||+ |||..+.|+.|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 3568999988743 222 5688999999999999998877 9999999999999997 999999999999
Q ss_pred EEecc
Q 014839 117 VNWAY 121 (417)
Q Consensus 117 v~~~~ 121 (417)
|++-.
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 99754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=1.2e-08 Score=89.13 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=56.0
Q ss_pred ccHHHHHHhhhhcCccceEEEEeec----------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 269 VTSVDLHRHFHALCVGTIEDVRVQR----------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 269 ~t~~~L~~~F~~~~~G~i~~v~i~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
-.+++|++.|++| |.|.++.|.+ .+|++||+|.+.++|.+|++.|||+.|+||.|+|.|..
T Consensus 141 e~~~dl~~e~~~~--G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTT--SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHcc--CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3578999999999 9999999973 36899999999999999999999999999999999964
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=8.6e-07 Score=64.81 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=71.5
Q ss_pred ccceEEeeCCCccccHHHHHHhhhh---cCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHA---LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~---~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
..++|.|.|||..+.++.|.-+|+. -+.|.|.++.... +-|+|+|.+.+.|++.++. ..+.|+|.+|.|.-..+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 3478999999999999999999998 3668999999877 7899999999999999874 47889999999976555
Q ss_pred CCCCCCCCCCCCCCCCC
Q 014839 333 PTPPGTSSTPLPPPPAP 349 (417)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (417)
..+.+---...++.++|
T Consensus 84 ~~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 84 RAPARLLLQGLPPGTSG 100 (104)
T ss_dssp CCCCCCCCCSCCCCCCC
T ss_pred CCcceEeeecCCCCCCC
Confidence 55444333333333333
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.2e-07 Score=68.31 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=67.4
Q ss_pred CCCCCceEEECCCCccCCHHHHHHhhcCC-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014839 128 DTSGHFNVFVGDLSPEVTDATLFACFSVF-----PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (417)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-----G~v~~v~~~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 202 (417)
..+..++|-+.|||..+++..|+.+++++ |.+..+.+..| -+-|+|+|.+...|-+|.-.|+|..|.||
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 34457889999999999999999999999 99999999977 34599999999999999988999999999
Q ss_pred EEEEEE
Q 014839 203 QIRCNW 208 (417)
Q Consensus 203 ~i~v~~ 208 (417)
+|+|.-
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999863
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.9e-07 Score=67.71 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhcc-----CCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSST-----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~-----G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
....++|-|-|||..+++..|+.+.+.+ |.+..|.+..+ .+=|+|+|.|...|-+|.-.|+|..|.|++|++.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD--H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD--FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT--TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC--CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 3457889999999999999999999999 99997777554 4579999999999999998999999999999987
Q ss_pred e
Q 014839 119 W 119 (417)
Q Consensus 119 ~ 119 (417)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.4e-06 Score=63.62 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhc---c--CCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEE
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSS---T--GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~---~--G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 118 (417)
.+..++|.|.|||..++++.|.-+|+. - |+|.+|+... +-|+|+|.+.+.|++.++ .....+.+.+|.|.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 345678999999999999999999997 2 4888887744 689999999999999995 44678889999998
Q ss_pred ecccCCCCCCCCCCceEEECCCCccCC
Q 014839 119 WAYASSQREDTSGHFNVFVGDLSPEVT 145 (417)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nlp~~~~ 145 (417)
...+. ...+|++.+|++.++
T Consensus 80 P~~~~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPR-------APARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCC-------CCCCCCCCSCCCCCC
T ss_pred cCCCC-------CcceEeeecCCCCCC
Confidence 75433 346799999998765
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=2.4e-06 Score=62.84 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=65.8
Q ss_pred ceEEeeCCCccc-c----HHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q 014839 258 TTVYVGNLSSEV-T----SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 332 (417)
Q Consensus 258 ~~l~V~nLp~~~-t----~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 332 (417)
++|+|.||+.++ . .+.++++|..| +++......++=.-..|.|.++++|.+|...||+..|+|++|+|-|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~--~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY--DKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT--CSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh--CcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 689999999877 3 25778999999 8999999999866789999999999999999999999999999999984
Q ss_pred C
Q 014839 333 P 333 (417)
Q Consensus 333 ~ 333 (417)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.83 E-value=0.00012 Score=52.71 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~ 106 (417)
.-...++| ++|..+...||.++|+.||.|. |+++.|. .|||.|.+++.|..|+..++
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 33445666 9999999999999999999776 7777765 79999999999999998764
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=8.7e-05 Score=54.56 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=62.6
Q ss_pred CCeEEEcCCCccC-CH----HHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEecc
Q 014839 47 CRSVYVGNIHPQV-TN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (417)
Q Consensus 47 ~~~v~v~nLp~~~-~e----~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 121 (417)
.++|+|.||+.++ .. +.++++|..|+++.....++. -+=..|.|.++++|.+|-..||+..|.|++++|.++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 5689999998876 22 567899999999888766654 3357999999999999999999999999999999986
Q ss_pred c
Q 014839 122 A 122 (417)
Q Consensus 122 ~ 122 (417)
+
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.67 E-value=0.00011 Score=53.25 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=54.3
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC------CCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK------SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~------~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
.+|.|++||+.+||+++.+.+..+..+.....+..+. ..-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999887766555555431 2479999999999999999999988764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.63 E-value=0.00016 Score=52.27 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=55.1
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
++|.|++||+.+|++++.+.++.. +.+........ -.-|+|.|.+.++...-.+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999998 78877777654 2569999999999999999999998743
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.0009 Score=50.64 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=61.6
Q ss_pred ccceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC-eeeEEeecC
Q 014839 256 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG-KPIKCSWGS 331 (417)
Q Consensus 256 ~~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~ 331 (417)
..+.|.|-+.|... ...+..+|++| |.|.+........+..|+|.+..+|.+|+.. ||..|+| -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~--G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY--GNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT--SCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh--CcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 34789999999986 56788899999 9999999866678999999999999999987 9999985 667777754
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.0009 Score=50.65 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=60.5
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcCCCCCC-ceEEEEecc
Q 014839 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG-QPIKVNWAY 121 (417)
Q Consensus 44 ~~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g-~~l~v~~~~ 121 (417)
....+-|.|-+.|... .+.|.+.|++||.|.+... .....+-.|.|.+..+|.+||. .||..|.| --|-|.++.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4446789999999986 5688899999999997765 4456799999999999999995 89999875 557777654
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.33 E-value=0.00019 Score=51.89 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=45.9
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc
Q 014839 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (417)
Q Consensus 49 ~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~ 106 (417)
.++| ++|..+...||.++|+.||.|. |+++.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3555 9999999999999999999655 7777765 79999999999999998775
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.91 E-value=0.0031 Score=45.48 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=43.1
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 316 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~ 316 (417)
..++| ++|+.+...||.++|+.| | =..|+.+.| -.|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f--g-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF--G-NIQISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT--C-SCCCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc--C-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999 5 223344444 589999999999999999763
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.00052 Score=49.87 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC------CCCEEEEEecCHHHHHHHHHHhcCCCCCC
Q 014839 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (417)
Q Consensus 46 ~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~------~~g~afV~F~~~~~A~~Al~~l~g~~i~g 112 (417)
.+-+|.|+.||+.+||+++.+.+..+-++.....+..+ ...-|||.|.+.++.....+..+|..|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45689999999999999877766654332211111111 12468999999999999999999988754
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.88 E-value=0.001 Score=48.28 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=51.5
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG 322 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 322 (417)
-+|.|+.||+.+||+++.+.++.. -.+........ -..|+|.|.+.++...-.+.++|..|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC--SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc--CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 579999999999999999999887 55554444332 2469999999999999999999998743
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.67 E-value=0.0022 Score=49.17 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEE-EEeec-------------------cccEEEEEeCCHHHHHHHHHHhCC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQR-------------------DKGFGFVRYSTHPEAALAIQMGNA 317 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~-v~i~~-------------------~~g~afV~f~~~~~A~~A~~~l~g 317 (417)
..|.|-+.|++.+.. +.++|++| |.|.+ +...+ ..++..|+|.+..+|.+|+.. ||
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~--G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEF--GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGG--SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred eEEEEEecCHHHHHH-HHHHHHhh--ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 468888997776654 67889999 88877 22211 256789999999999999987 99
Q ss_pred CeeCCeeeEEeecC
Q 014839 318 RILCGKPIKCSWGS 331 (417)
Q Consensus 318 ~~~~g~~l~v~~a~ 331 (417)
..|+|.-|-|...+
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.46 E-value=0.0035 Score=48.07 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcce-EEEEe------------c--C---CCCEEEEEecCHHHHHHHHHHhcCC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEG-CKLIK------------K--D---KSSYGFVDYFDRRSAALAIVTLNGR 108 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~-v~i~~------------~--~---~~g~afV~F~~~~~A~~Al~~l~g~ 108 (417)
...|.|-+.|.+... .+.+.|++||.|.+ +...+ . . ..+|..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 446889999877655 77789999998876 21111 0 1 24688999999999999995 9999
Q ss_pred CCCCceEEEEecc
Q 014839 109 HIFGQPIKVNWAY 121 (417)
Q Consensus 109 ~i~g~~l~v~~~~ 121 (417)
.|.|.-|-|.++.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999888888764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.41 E-value=0.0018 Score=61.66 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=41.3
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHH
Q 014839 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIV 103 (417)
Q Consensus 48 ~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~ 103 (417)
|+|+|. .|..+++.+|.++|++||+|.++.+.+++ +-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 889997 79999999999999999999998775533 3699999999999997764
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.39 E-value=0.0049 Score=44.60 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=44.9
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhC
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 316 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~ 316 (417)
..++| ++|+.+...||.++|+.| | =..|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f--g-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF--G-NIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS--E-EEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc--C-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 44566 999999999999999999 7 344555555 589999999999999999875
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.71 E-value=0.0056 Score=58.25 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=42.9
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeecccc-EEEEEeCCHHHHHHHHHH
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-FGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g-~afV~f~~~~~A~~A~~~ 314 (417)
++|+|. .|..+++.+|.++|++| |+|.++...+++| |+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~--g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF--GPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG--SCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc--CCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 679997 79999999999999999 9999999999976 799999999988876543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.65 E-value=0.97 Score=43.81 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=45.1
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhcC
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~g 107 (417)
...++|+ +|..+...+|.+.|+.||.|. |+++.+ ..|||.|.+.++|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 3456665 999999999999999999654 554443 4799999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.65 E-value=5.9 Score=38.31 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=44.6
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA 317 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g 317 (417)
...++|+ +|..+...+|.++|+.| |. .+|+.+. ...|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f--g~-v~V~wid-dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF--GN-IQISWID-DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG--CC-CEEEECS-SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc--CC-EEEEEEc-CCeEEEEECCHHHHHHHHHHHHh
Confidence 3456665 99999999999999999 74 3555444 45799999999999999998853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.09 E-value=7.8 Score=26.29 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=40.1
Q ss_pred cccHHHHHHhhhhcC---ccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q 014839 268 EVTSVDLHRHFHALC---VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 331 (417)
Q Consensus 268 ~~t~~~L~~~F~~~~---~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 331 (417)
.++..+|..++..-+ ...|-.+++..+ +.||+-.. +.+.++++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 455667777766441 125666677555 88988877 56778899999999999999998764
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.05 E-value=29 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=36.0
Q ss_pred eEEEcCCCcc---------CCHHHHHHHH--hccCCcceEEEEecC--CCCEEEEEecCHHHH
Q 014839 49 SVYVGNIHPQ---------VTNALLQEVF--SSTGPLEGCKLIKKD--KSSYGFVDYFDRRSA 98 (417)
Q Consensus 49 ~v~v~nLp~~---------~~e~~L~~~f--~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A 98 (417)
++.|-|+|.. ....+|++.| ..|.++. |+.+.+. ..|+|.|+|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHH
Confidence 5788898872 3347899977 8998876 6666554 468999999876544
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.71 E-value=68 Score=22.30 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=50.5
Q ss_pred cceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC-------eeCCeeeEE
Q 014839 257 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR-------ILCGKPIKC 327 (417)
Q Consensus 257 ~~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~-------~~~g~~l~v 327 (417)
.+-+.|-|+|..+-..++.-..... |.--+|... .|.|.|.|.+.++-.-|+..|-.+ ++.|....|
T Consensus 12 nclikiinipqgtlkaevvlavrhl--gyefycdyi--dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdv 85 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHL--GYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDV 85 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTT--CCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhc--CeeEeeeee--cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeee
Confidence 3678899999999888887777777 766666654 468999999999999998876322 456665554
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=46.43 E-value=18 Score=24.35 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHhccCCcceEEEEe-cCCCCEEEEEecCHHHHHHHHHHhcCCCCCCceEEEEec
Q 014839 58 QVTNALLQEVFSSTGPLEGCKLIK-KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (417)
Q Consensus 58 ~~~e~~L~~~f~~~G~v~~v~i~~-~~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 120 (417)
.+...+|..++..-+.|..-.|-. +-...|.||+-... .+..+++.|++..+.|+.++|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 456677877777555433222211 11345899998776 588899999999999999988765
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.47 E-value=53 Score=26.31 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=36.9
Q ss_pred EEECCCCc-c--------CCHHHHHHhh--cCCCCeeEEEEeecCCCCCcccEEEEEeCCH-HHHHHHHH
Q 014839 135 VFVGDLSP-E--------VTDATLFACF--SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ-EDAQSAIN 192 (417)
Q Consensus 135 l~v~nlp~-~--------~~e~~l~~~f--~~~G~v~~v~~~~d~~~~~~~g~afV~f~~~-~~A~~a~~ 192 (417)
+.|-|+|. . .+..+|++.| ..|.++. ++.++++ .-++|++.|+|.+. ..-..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 55566665 1 4457899977 9998876 5555553 35789999999854 44444544
No 408
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.82 E-value=98 Score=22.17 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=46.2
Q ss_pred eeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q 014839 262 VGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 333 (417)
Q Consensus 262 V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 333 (417)
|-.++..+.-+||..-....+ |.-.+++... .-..|-..+.+|-++|++.|+.. -.-+.|+|-...++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~f-Gq~ldL~y~n--~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAF-GQSMDLHYTN--NELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHH-SSCEEEEECS--SSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHh-CCeeeEEEec--ceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 345678888888877665432 7766766653 35888999999999999998654 34444555444333
No 409
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.05 E-value=1e+02 Score=19.38 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=43.3
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeC---CHHHHHHHHHH
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS---THPEAALAIQM 314 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~---~~~~A~~A~~~ 314 (417)
.++.|.++.-.--...+...+... ..|..+.+....+.+.|.|. +.++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~--~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTS--TTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcC--CCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 467888888777788899999998 78999999888888999984 34455666665
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.28 E-value=19 Score=28.24 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHHHhhhhcCccceEEEEeeccccEEEEEeC
Q 014839 272 VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS 303 (417)
Q Consensus 272 ~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~ 303 (417)
+|+.++|... |.|+.... ++||+||+-.
T Consensus 2 ~~~~~l~~~~--G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGA--GICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEE--EEEEEEET--TTTEEEEEEE
T ss_pred Ccccccccce--eEEEEEEC--CCCeeEEeeC
Confidence 4566777777 88876653 5789999875
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.51 E-value=1.6e+02 Score=20.37 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=45.9
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHHhc
Q 014839 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (417)
Q Consensus 45 ~~~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~l~ 106 (417)
..++-|.|-|+|..+-..++.-.....|---.| +--.|.|.+.|.+.++-+.|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefyc----dyidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYC----DYIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEE----EECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEee----eeecCeeEEEecCChHHHHHHHHHH
Confidence 446779999999999999888777777733333 3356789999999999999997764
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.69 E-value=1.4e+02 Score=19.18 Aligned_cols=55 Identities=7% Similarity=-0.102 Sum_probs=42.1
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCCEEEEEecCHHHHHHHHHH
Q 014839 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT 104 (417)
Q Consensus 47 ~~~v~v~nLp~~~~e~~L~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~Al~~ 104 (417)
..++.|.++.-.--...|.+.+.. ..|..+.+ +-..+.+.|.|.+.++...+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v--~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKV--DLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEE--CSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEE--EccCCEEEEEECCHHHHHHHHHH
Confidence 346889999888888999999999 88887777 33446788888866666777754
No 413
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.83 E-value=1.7e+02 Score=18.55 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=45.0
Q ss_pred ceEEeeCCCccccHHHHHHhhhhcCccceEEEEeeccccEEEEEeC----CHHHHHHHHHHh
Q 014839 258 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS----THPEAALAIQMG 315 (417)
Q Consensus 258 ~~l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~~g~afV~f~----~~~~A~~A~~~l 315 (417)
.++.|.++.-.--...+...+... ..|..+.+....+.+.|+|. +.++...+++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~--~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNV--NGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTS--TTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcC--CCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 467888888777778899999988 78999998888889999995 456777777763
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.62 E-value=1.7e+02 Score=20.32 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=40.3
Q ss_pred EEeeCCCccccHHHHHHhhhhcCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHH
Q 014839 260 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQM 314 (417)
Q Consensus 260 l~V~nLp~~~t~~~L~~~F~~~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~A~~~ 314 (417)
-++-..+...+..+|++.++.+..-.|..|....- ..-|+|++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 55567788999999999998863347888876542 34599999888777765444
Done!