Query 014841
Match_columns 417
No_of_seqs 113 out of 229
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 8E-109 2E-113 806.3 19.8 402 1-417 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 4.6E-51 1E-55 415.0 32.6 374 10-409 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 1.4E-28 3E-33 244.9 25.7 309 7-415 2-310 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 1.2E-26 2.5E-31 231.6 26.8 316 6-411 2-319 (321)
5 PRK09903 putative transporter 99.9 3.4E-24 7.5E-29 213.5 29.5 310 5-416 3-313 (314)
6 TIGR00841 bass bile acid trans 97.4 0.00096 2.1E-08 66.0 10.8 112 297-414 10-122 (286)
7 PF01758 SBF: Sodium Bile acid 94.0 0.32 7E-06 44.8 8.8 108 300-413 3-112 (187)
8 COG0385 Predicted Na+-dependen 92.5 0.78 1.7E-05 46.2 9.5 110 298-414 41-152 (319)
9 TIGR00841 bass bile acid trans 92.5 2.8 6.1E-05 41.4 13.4 133 10-161 137-273 (286)
10 PF13593 DUF4137: SBF-like CPA 90.7 2.1 4.5E-05 43.0 10.4 141 260-413 4-147 (313)
11 TIGR00832 acr3 arsenical-resis 90.5 5.4 0.00012 40.4 13.3 106 303-414 51-158 (328)
12 TIGR00832 acr3 arsenical-resis 77.5 5.5 0.00012 40.3 6.3 108 16-127 183-297 (328)
13 COG0385 Predicted Na+-dependen 73.5 13 0.00028 37.6 7.5 45 74-118 224-268 (319)
14 PF05684 DUF819: Protein of un 68.2 16 0.00034 37.8 7.1 85 17-104 28-116 (378)
15 PF03806 ABG_transport: AbgT p 62.2 70 0.0015 34.4 10.6 80 13-94 79-164 (502)
16 PRK11339 abgT putative aminobe 59.1 35 0.00076 36.7 7.8 80 13-94 89-174 (508)
17 PF05684 DUF819: Protein of un 50.8 1E+02 0.0023 31.8 9.6 132 14-164 240-372 (378)
18 TIGR00819 ydaH p-Aminobenzoyl- 45.8 2.4E+02 0.0052 30.5 11.5 78 15-94 87-170 (513)
19 PF03616 Glt_symporter: Sodium 41.9 4.1E+02 0.0088 27.3 13.1 107 56-172 73-187 (368)
20 PF13593 DUF4137: SBF-like CPA 41.4 1.2E+02 0.0026 30.5 8.1 105 13-124 163-274 (313)
21 COG2978 AbgT Putative p-aminob 40.8 91 0.002 33.2 7.2 71 13-86 91-161 (516)
22 KOG2262 Sexual differentiation 40.8 6.9 0.00015 43.0 -0.9 100 58-169 432-533 (761)
23 PRK11677 hypothetical protein; 38.5 33 0.00072 30.3 3.2 21 79-99 6-26 (134)
24 TIGR03802 Asp_Ala_antiprt aspa 37.3 82 0.0018 34.3 6.7 176 3-196 3-212 (562)
25 PRK03818 putative transporter; 36.8 1.3E+02 0.0027 32.9 7.9 132 32-172 50-186 (552)
26 PF06305 DUF1049: Protein of u 34.9 54 0.0012 24.6 3.5 26 73-98 18-43 (68)
27 PRK12460 2-keto-3-deoxyglucona 34.4 1E+02 0.0023 31.1 6.3 102 13-123 165-267 (312)
28 TIGR00783 ccs citrate carrier 33.9 1.7E+02 0.0037 30.1 7.8 82 17-101 207-294 (347)
29 PF06295 DUF1043: Protein of u 33.4 40 0.00087 29.3 2.9 22 79-100 2-23 (128)
30 PF03956 DUF340: Membrane prot 28.5 46 0.00099 31.1 2.5 91 19-114 3-95 (191)
31 COG3763 Uncharacterized protei 27.9 94 0.002 24.4 3.7 25 71-95 2-26 (71)
32 TIGR00939 2a57 Equilibrative N 27.6 7.3E+02 0.016 26.0 21.2 18 325-342 339-356 (437)
33 PF11120 DUF2636: Protein of u 27.2 65 0.0014 24.7 2.7 28 65-98 2-29 (62)
34 COG5505 Predicted integral mem 26.0 3.6E+02 0.0079 27.4 8.3 113 17-158 250-365 (384)
35 TIGR03082 Gneg_AbrB_dup membra 25.8 1.3E+02 0.0029 26.8 5.0 47 55-101 55-105 (156)
36 PRK05326 potassium/proton anti 25.7 3.4E+02 0.0073 29.4 9.0 97 22-124 252-350 (562)
37 PRK05274 2-keto-3-deoxyglucona 23.9 1.3E+02 0.0029 30.4 5.1 100 15-122 174-274 (326)
38 PF03390 2HCT: 2-hydroxycarbox 23.9 2.3E+02 0.0049 29.9 6.8 112 11-127 50-178 (414)
39 COG3493 CitS Na+/citrate sympo 22.5 4.9E+02 0.011 27.3 8.7 103 20-127 82-195 (438)
40 PRK01844 hypothetical protein; 21.8 1.4E+02 0.0031 23.6 3.7 24 72-95 3-26 (72)
41 COG2323 Predicted membrane pro 21.6 2.8E+02 0.0061 26.7 6.5 81 14-101 8-88 (224)
42 PRK04972 putative transporter; 21.4 2.7E+02 0.0058 30.4 7.1 153 13-178 13-195 (558)
43 COG3180 AbrB Putative ammonia 21.4 1.5E+02 0.0032 30.5 4.8 47 55-101 66-116 (352)
44 COG0475 KefB Kef-type K+ trans 21.3 2.3E+02 0.0051 29.3 6.4 64 37-101 264-328 (397)
45 TIGR00210 gltS sodium--glutama 21.2 4.4E+02 0.0095 27.5 8.4 114 18-141 249-370 (398)
46 PF06376 DUF1070: Protein of u 20.7 1E+02 0.0022 20.8 2.3 20 140-159 12-31 (34)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.8e-109 Score=806.33 Aligned_cols=402 Identities=47% Similarity=0.842 Sum_probs=345.0
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHH
Q 014841 1 MEILDLFEVAL--MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN 78 (417)
Q Consensus 1 m~~~~l~~~a~--~pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~ 78 (417)
|||++++..|. +|++||++++.+|+++|+||.|+|++|+||.+|+++|++|+|||||+|+|+++|+|++.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHH
Q 014841 79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (417)
Q Consensus 79 ~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i 158 (417)
+++++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++|||++|+|.+||++|++++||+|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhcccccc-cccCCCCCCccc-cccCCCCCCcccccccCcCCCCCCCCCCCCCcchhhhhhcccCCCcchh
Q 014841 159 YIWTYVYYVMSLYLNKS-VSDAGTNKDSRI-HIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFL 236 (417)
Q Consensus 159 ~~~t~~~~ll~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (417)
++|||+||++.+...+. +...+..-|... ....++. ++.++++++++...+.+++ +++. ...+
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~---e~~~~~~~k~~ll~~~en~--~~~~----------~g~~ 226 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSV---ESDEDSTCKTLLLASKENR--NNQV----------VGRE 226 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCc---ccccccccccccccccccC--CCce----------eecc
Confidence 99999999776653221 111100000000 0000000 0011111222211111111 1111 0122
Q ss_pred HHHHHHHHHHhhhhhhhcccChhHHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhccccc
Q 014841 237 DKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGL 316 (417)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~g~ 316 (417)
.+.+++.+...++.+++++++||++|+++|+++|.|||||+++|++++|++++|||++++|+++|||++++|||||.+|+
T Consensus 227 ~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~ 306 (408)
T KOG2722|consen 227 GKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGL 306 (408)
T ss_pred ccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCc
Confidence 22333333333444579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCC-CChHHHHHHHhccCCchhHHHHHHHHhcCCCcchhHHHHH
Q 014841 317 KRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG-SDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILL 395 (417)
Q Consensus 317 ~~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~-~Dpl~~FVl~L~~~~PpA~~l~~i~~l~~~~e~e~s~il~ 395 (417)
++|.++.|++++++++||+++|..|+++|..++|+|.++ |||+|+||++||+++|||||++++||+||.+|+|||++||
T Consensus 307 ~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~ 386 (408)
T KOG2722|consen 307 RSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILF 386 (408)
T ss_pred hhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 014841 396 WTYAVAAFALTLWITFYIWLLT 417 (417)
Q Consensus 396 wqY~~~~vslt~~~~~~l~l~~ 417 (417)
|+|+++.+++|+|+++|+|++.
T Consensus 387 W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 387 WTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHhC
Confidence 9999999999999999999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.6e-51 Score=415.03 Aligned_cols=374 Identities=31% Similarity=0.465 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHH
Q 014841 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSAL 89 (417)
Q Consensus 10 a~~pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ig~~l 89 (417)
++++++++++++++|++++ |.|+++++.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHhhhhhhhhh
Q 014841 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (417)
Q Consensus 90 g~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~~~~ll~ 169 (417)
+|++.|++|.|+++|+.+..+|+|+|++++|+.++++++++ +|.+|++++.++..++.|++++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999753 88899999999999999999999887
Q ss_pred cccccccccCCCCC--Ccccccc-CCCC-----CC-cccccc-cCcCCCCCCCCCCCCCcchhhhhhcccCCCcchhHHH
Q 014841 170 LYLNKSVSDAGTNK--DSRIHII-SSGE-----SS-TNIFLE-SSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKM 239 (417)
Q Consensus 170 ~~~~~~~~~~~~~~--~~~~~~~-~~~~-----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (417)
.+.++.+++++.++ ++..+.+ ++++ ++ ...+++ .+++.+.....+.+.+.++..+..++.+.....+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKS 226 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhh
Confidence 66443221110000 0000000 0000 00 000000 0000000000000000000000000000111112222
Q ss_pred HHHHHHHhhhhhhhcccChhHHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhcccccccC
Q 014841 240 RQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRS 319 (417)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~g~~~s 319 (417)
++..+....+...+.++|||++|+++|++++++|+++.++++ .+++++++++|++++|++++++|++|+++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~ 301 (385)
T PF03547_consen 227 SNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKS 301 (385)
T ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Confidence 222222222222589999999999999999999999999998 899999999999999999999999999988888
Q ss_pred CCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHHHHHhcCCCcchhHHHHHHHHH
Q 014841 320 GVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYA 399 (417)
Q Consensus 320 ~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~i~~l~~~~e~e~s~il~wqY~ 399 (417)
+.+.+.....+++|++++|++++++++.+. -|+....+++++.++|||++...+++.||.+++++|..++|+|+
T Consensus 302 ~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~ 375 (385)
T PF03547_consen 302 ALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTL 375 (385)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888899888999999999999999999764 36667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 014841 400 VAAFALTLWI 409 (417)
Q Consensus 400 ~~~vslt~~~ 409 (417)
++.+++|+|+
T Consensus 376 ~~~~~~~~~~ 385 (385)
T PF03547_consen 376 LSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHC
Confidence 9999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=244.93 Aligned_cols=309 Identities=21% Similarity=0.326 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHH
Q 014841 7 FEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG 86 (417)
Q Consensus 7 ~~~a~~pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ig 86 (417)
++..+.+++++++++++|++++ |.|.++++..|.+|++++++++|||+|++++++-..++ +++..+++..+.+.+.+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4667899999999999999999 99999999999999999999999999999999987666 88888888888888888
Q ss_pred HHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHhhhhhh
Q 014841 87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYY 166 (417)
Q Consensus 87 ~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~~~~ 166 (417)
.+..++..|.+|.|+++++....+.+|+|+|++++.+..++ || ++|++|.++++.+++++.|++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G------~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FG------EKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cC------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999997766665 44 778999999999999999999988
Q ss_pred hhhcccccccccCCCCCCccccccCCCCCCcccccccCcCCCCCCCCCCCCCcchhhhhhcccCCCcchhHHHHHHHHHH
Q 014841 167 VMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKF 246 (417)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 246 (417)
.+.+... + .+. ..+ +.
T Consensus 146 ~l~~~~~---------~-----------------------------------~~~----------------~~~----~~ 161 (311)
T COG0679 146 LLARSGG---------G-----------------------------------TNK----------------SLL----SV 161 (311)
T ss_pred HHHHhcC---------C-----------------------------------chh----------------HHH----HH
Confidence 7754310 0 000 011 11
Q ss_pred hhhhhhhcccChhHHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhcccccccCCCCchhh
Q 014841 247 TEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLI 326 (417)
Q Consensus 247 ~~~~~l~~~~~Pp~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~g~~~s~l~~~~i 326 (417)
. .+-+.||+.+|.++|++..... ...+ .++.++.+++|++++|++++++|..|+. .+.++...+.+
T Consensus 162 ~----~~~~~nP~i~a~i~g~~~~~~~----i~lP-----~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~ 227 (311)
T COG0679 162 L----KKLLTNPLIIALILGLLLNLLG----ISLP-----APLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPII 227 (311)
T ss_pred H----HHHHhCcHHHHHHHHHHHHHcC----CCCc-----HHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhH
Confidence 1 1556789999999999887655 1111 2899999999999999999999999987 55677788888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Q 014841 327 MGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALT 406 (417)
Q Consensus 327 v~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~i~~l~~~~e~e~s~il~wqY~~~~vslt 406 (417)
......|+++.|++..++.+.. | + ++...-|+.++.++|+|.+-..+++-+|..++..+...+-+-.++.+++|
T Consensus 228 ~~~~~~kll~~Pl~~~~~~~~~---~-l--~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p 301 (311)
T COG0679 228 LIALSLKLLLAPLVALLVAKLL---G-L--SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLP 301 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---C-C--ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999966644 2 2 44444899999999999999999999988888888888899999999999
Q ss_pred HHHHHHHhh
Q 014841 407 LWITFYIWL 415 (417)
Q Consensus 407 ~~~~~~l~l 415 (417)
.|..++.+.
T Consensus 302 ~~~~~l~~~ 310 (311)
T COG0679 302 LLILLLLRS 310 (311)
T ss_pred HHHHHHhcc
Confidence 998877653
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.95 E-value=1.2e-26 Score=231.63 Aligned_cols=316 Identities=17% Similarity=0.188 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHH
Q 014841 6 LFEVALMPILKVLLVTALGLVL-AIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFL 84 (417)
Q Consensus 6 l~~~a~~pvlkVlli~~~G~~l-A~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ 84 (417)
.+|..+..++.++++.+.|+++ . |.++++++..|.+|++++++.+|||+|+++.+.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999 8 999999999999999999999999999999985333234444444454556667
Q ss_pred HHHHHHHHHHH-hhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHhhh
Q 014841 85 IGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTY 163 (417)
Q Consensus 85 ig~~lg~l~~~-i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~ 163 (417)
..++++|++.| .+|.+++.++....+++++|++.+-+-+++++- |++. ..+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-------G~~~---~~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-------GEEG---AKILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-------cccc---hhhhHHHHHHHhccchhHHHH
Confidence 78899999988 889999999999999999999999999999994 3221 113566666666666788998
Q ss_pred hhhhhhcccccccccCCCCCCccccccCCCCCCcccccccCcCCCCCCCCCCCCCcchhhhhhcccCCCcchhHHHHHHH
Q 014841 164 VYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRI 243 (417)
Q Consensus 164 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (417)
++.+...... . ++ ++. ++.++..++.+
T Consensus 150 ~~~~~~~~~~-----~--~~-----------------------------------~~~-----------~~~~~~~~~~~ 176 (321)
T TIGR00946 150 GLFLVSEDGA-----G--GE-----------------------------------GSG-----------ESTRLMLIFVW 176 (321)
T ss_pred HHHHhccccc-----c--cc-----------------------------------ccc-----------hhHHHHHHHHH
Confidence 8754321100 0 00 000 00111111111
Q ss_pred HHHhhhhhhhcccChhHHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhcccccccCCCCc
Q 014841 244 NKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGV 323 (417)
Q Consensus 244 ~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~g~~~s~l~~ 323 (417)
+ +-+.||+.+|.++|+++...+. + -| .++.|+++++|++++|+.++++|..|.. ++.+.++
T Consensus 177 ~--------~~~~nP~iia~i~Gl~~~~~~i-~-------lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~ 237 (321)
T TIGR00946 177 K--------KLIKFPPLWAPLLSVILSLVGF-K-------MP-GLILKSISILSGATTPMALFSLGLALSP--RKIKLGV 237 (321)
T ss_pred H--------HHHhCCChHHHHHHHHHHHHhh-c-------Cc-HHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccCh
Confidence 1 3457899999999999998753 1 11 5899999999999999999999999863 3333456
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Q 014841 324 SLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAF 403 (417)
Q Consensus 324 ~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~i~~l~~~~e~e~s~il~wqY~~~~v 403 (417)
+.+...++.|+++.|++..++.+.. +-|+..+-+++++.++|||.+-..+++.||.++++.+...+++.+++.+
T Consensus 238 ~~~~~~~~~klil~P~i~~~~~~~~------~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~ 311 (321)
T TIGR00946 238 RDAILALIVRFLVQPAVMAGISKLI------GLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLI 311 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 7888999999999999997776532 4478889999999999999999999999999998899999999999999
Q ss_pred HHHHHHHH
Q 014841 404 ALTLWITF 411 (417)
Q Consensus 404 slt~~~~~ 411 (417)
++|+|+.+
T Consensus 312 tlp~~~~l 319 (321)
T TIGR00946 312 SLPLFIIL 319 (321)
T ss_pred HHHHHHHH
Confidence 99999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.94 E-value=3.4e-24 Score=213.47 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHH
Q 014841 5 DLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFL 84 (417)
Q Consensus 5 ~l~~~a~~pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ 84 (417)
+.+..++.| +.+++++|+++. |+|+++++..|.+|++++++.+||++|+++.+. +.++..+-|.+.+..++.+.
T Consensus 3 ~~~~~~ilp---if~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (314)
T PRK09903 3 TFFIGDLLP---IIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIV 76 (314)
T ss_pred HHHHHHHHH---HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHH
Confidence 445555444 558889999999 999999999999999999999999999999875 55655533445677778888
Q ss_pred HHHHHHHHHHH-hhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHhhh
Q 014841 85 IGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTY 163 (417)
Q Consensus 85 ig~~lg~l~~~-i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~ 163 (417)
+.++++|++.+ ..|-+++.++....+++++|+|++-+-+++++ ||++. .-|+.|..++ .+.+++.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~---~~~~~~a~~~-~~~~~~~~~~ 145 (314)
T PRK09903 77 GCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV---STGLVVAIIS-IIVNAITIPI 145 (314)
T ss_pred HHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh---hhhhHHHHHH-HHHHHHHHHH
Confidence 88888888864 66777777777888889999999999999998 44321 1155555544 3578899999
Q ss_pred hhhhhhcccccccccCCCCCCccccccCCCCCCcccccccCcCCCCCCCCCCCCCcchhhhhhcccCCCcchhHHHHHHH
Q 014841 164 VYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRI 243 (417)
Q Consensus 164 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (417)
+..+++.... . ++ +.+ ..++.+
T Consensus 146 g~~~~~~~~~-----~--~~-----------------------------------~~~----------------~~~~~l 167 (314)
T PRK09903 146 GLYLLNPSSG-----A--DG-----------------------------------KKN----------------SNLSAL 167 (314)
T ss_pred HHHHHccccc-----c--cc-----------------------------------ccc----------------hHHHHH
Confidence 8776653210 0 00 000 001112
Q ss_pred HHHhhhhhhhcccChhHHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhcccccccCCCCc
Q 014841 244 NKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGV 323 (417)
Q Consensus 244 ~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~g~~~s~l~~ 323 (417)
+ +-+.||+.+|.++|+++-+.. =.-| .++.++++++|++++|+.++.+|+.|++...+ ..
T Consensus 168 ~--------~~~~nP~iia~~~gl~~~l~~--------i~lP-~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~- 227 (314)
T PRK09903 168 I--------SAAKEPVVWAPVLATILVLVG--------VKIP-AAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS- 227 (314)
T ss_pred H--------HHHhchHHHHHHHHHHHHHcC--------CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-
Confidence 2 335679999999999876421 1111 59999999999999999999999999873222 22
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Q 014841 324 SLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAF 403 (417)
Q Consensus 324 ~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~i~~l~~~~e~e~s~il~wqY~~~~v 403 (417)
+......+.|+++.|++..++... .|+ |+...=+++++.++|+|.+-.-+++-||.+.+.++...+.+-.++.+
T Consensus 228 ~~~~~~~~~Kli~~P~i~~~~~~~---~~l---~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~i 301 (314)
T PRK09903 228 AEIAYNTFLKLILMPLALLLVGMA---CHL---NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVV 301 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---cCC---CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 345677889999999988665543 233 66777799999999999999999999988777788888899999999
Q ss_pred HHHHHHHHHHhhc
Q 014841 404 ALTLWITFYIWLL 416 (417)
Q Consensus 404 slt~~~~~~l~l~ 416 (417)
++|+|+.+ ++++
T Consensus 302 Tlpl~~~l-~~~~ 313 (314)
T PRK09903 302 TAPLWIYV-SRLV 313 (314)
T ss_pred HHHHHHHH-HHhh
Confidence 99999985 5554
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.45 E-value=0.00096 Score=66.03 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=90.4
Q ss_pred hhhhhhHHHHhhhhhccc-ccccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHH
Q 014841 297 GEAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALA 375 (417)
Q Consensus 297 G~a~VP~~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~ 375 (417)
....+..+++.+|.+|.. .+++..-.+|.+...++.|++++|++..++.+.. +.||.+...+++..+.|+|.+
T Consensus 10 ~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 10 LLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchH
Confidence 344477889999999973 2323334557888888899999999998877643 468999999999999999999
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 014841 376 VGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIW 414 (417)
Q Consensus 376 l~~i~~l~~~~e~e~s~il~wqY~~~~vslt~~~~~~l~ 414 (417)
--.+|+.+|....-.+.....+-+++.+++|+|+.++..
T Consensus 84 s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 84 SNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988999996666566777779999999999999988764
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.97 E-value=0.32 Score=44.84 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=74.7
Q ss_pred hhhHHHHhhhhhccc-ccccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHH
Q 014841 300 AIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGT 378 (417)
Q Consensus 300 ~VP~~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~ 378 (417)
.+-..++.+|.++.. -.++..-.+|.++...+..++++|+++.++.+.+ .+.||-+..-+++..+.|.+..--.
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHH
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHH
Confidence 355677888888762 2333223468888888999999999999998444 3678999999999999999998777
Q ss_pred HHHhcCCCcchhHHH-HHHHHHHHHHHHHHHHHHHH
Q 014841 379 IIQLFETSESECSVI-LLWTYAVAAFALTLWITFYI 413 (417)
Q Consensus 379 i~~l~~~~e~e~s~i-l~wqY~~~~vslt~~~~~~l 413 (417)
+|.+.| |+.+.|+. -...-..+.+.+|+|..++.
T Consensus 78 ~t~l~~-Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 78 FTYLAG-GDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 777764 44454443 34777889999999988775
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=92.53 E-value=0.78 Score=46.16 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=83.7
Q ss_pred hhhhhHHHHhhhhhccc-ccccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHH
Q 014841 298 EAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAV 376 (417)
Q Consensus 298 ~a~VP~~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l 376 (417)
...+-.+++..|.+|.+ -.+..--+||..+...+.-|+++|++|+++.+... -||-+.-=+++..|.|..++-
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------LPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHhHHheeeCCCchhH
Confidence 45677888999999974 12223367889999999999999999999998653 588888888899999999998
Q ss_pred HHHHHhcCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHh
Q 014841 377 GTIIQLFETSESECSVIL-LWTYAVAAFALTLWITFYIW 414 (417)
Q Consensus 377 ~~i~~l~~~~e~e~s~il-~wqY~~~~vslt~~~~~~l~ 414 (417)
-.+|.+.+ |.--.|+.. .-.-++..+..|+++.+|+.
T Consensus 115 ~~~t~lAk-GnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 115 NAMTYLAK-GNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88898883 333333332 36677888888888887763
No 9
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.50 E-value=2.8 Score=41.42 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChhHHhh---hhhhhHhhhhhHHHHHhhcccccccch-hhhhHHHHHHHHHHHH
Q 014841 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVTHS---LNNLVFYVFNPALIGSNLAETITYQSL-ISLWFMPVNILLSFLI 85 (417)
Q Consensus 10 a~~pvlkVlli~~~G~~lA~~r~~iL~~~~~k~---lS~lv~~vflP~LiFs~l~~~it~~~i-~~~w~ipv~~ll~~~i 85 (417)
..+ ..-+++-...|..+. |.- ++ .+|. ++.+... ++=++++.-++.+.. ++ .+.|.+-+-.++.+.+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r--~~~--p~-~~~~~~~~~~~s~~-~l~liv~~~~~~~~~--~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVK--HKL--PQ-IAKIILKVGLISVF-LLSVIIAVVGGINVE--NLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHH--HHh--HH-HHHHHHhCchHHHH-HHHHHHHHHHHhhHH--HHHHhhHHHHHHHHHHHHH
Confidence 344 677888899998777 321 22 2222 3333222 222344444443321 12 2233344447778899
Q ss_pred HHHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHh
Q 014841 86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIW 161 (417)
Q Consensus 86 g~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~ 161 (417)
|+.+||.+.|.+|.+++.+.-+.-.++..|.+ +-+.+..+. |+ ++ ...-...|.......+.++.+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~-~~-~a~~~~~~~v~~~~~~~~~a~ 273 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FS-PE-VAVPSAIFPLIYALFQLAFAL 273 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cC-hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 444443332 33 21 222233555555555555443
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.67 E-value=2.1 Score=43.05 Aligned_cols=141 Identities=16% Similarity=0.251 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhccc-ccccCCCCchhhHHHHHHHHHHHh
Q 014841 260 TIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLP 338 (417)
Q Consensus 260 ~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilP 338 (417)
.++.++++.+|..=|-. +...+++.. ++.-...|..+.++-|.+|.. .++..--.+|....+...=|++.|
T Consensus 4 l~~l~~ai~la~~~P~~------g~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAP------GAAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcc------cccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 55666666666543332 122223320 123334488899999988863 233344677889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHH-HHHHhcCCCcchhHHHH-HHHHHHHHHHHHHHHHHHH
Q 014841 339 LLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVG-TIIQLFETSESECSVIL-LWTYAVAAFALTLWITFYI 413 (417)
Q Consensus 339 iigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~-~i~~l~~~~e~e~s~il-~wqY~~~~vslt~~~~~~l 413 (417)
+++.++...... + .|+-++.=+++..|+||.++.+ .+|+.-|-.+ ..+.+. .-.-.+.++..|+|+..++
T Consensus 76 ll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999998887652 2 4566888999999999987764 5677663333 222222 2678888899999998876
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=90.54 E-value=5.4 Score=40.36 Aligned_cols=106 Identities=16% Similarity=0.022 Sum_probs=76.9
Q ss_pred HHHHhhhhhcc-cccccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHHHHH
Q 014841 303 AMTLVIGANLL-SGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQ 381 (417)
Q Consensus 303 ~~llvLGa~L~-~g~~~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~i~~ 381 (417)
.+++.+|.+|. +-.++.--.+|.+....+.-++++|+++.++.+.+ .+.+|-+.-=+++..|.|.+..-..+|.
T Consensus 51 ~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 51 LMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 57788888885 22333334678899999999999999999988754 2557889999999999999987666677
Q ss_pred hcCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHh
Q 014841 382 LFETSESECSVILL-WTYAVAAFALTLWITFYIW 414 (417)
Q Consensus 382 l~~~~e~e~s~il~-wqY~~~~vslt~~~~~~l~ 414 (417)
+. .|+...|..+- ..-.++.+..|.+..+|+.
T Consensus 126 lA-kGnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 126 LA-KGDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 44445555543 5556666777777666553
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=77.53 E-value=5.5 Score=40.30 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhcc-----CCCChhHHhhhhhhhHhhhhhHHHHHhhcccc--cccchhhhhHHHHHHHHHHHHHHH
Q 014841 16 KVLLVTALGLVLAIDRI-----DLLGHSVTHSLNNLVFYVFNPALIGSNLAETI--TYQSLISLWFMPVNILLSFLIGSA 88 (417)
Q Consensus 16 kVlli~~~G~~lA~~r~-----~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~i--t~~~i~~~w~ipv~~ll~~~ig~~ 88 (417)
-+++-...|..+.+-.. +...++.++.++.+.. +++=..++...+.+- -.++..+.+.+-.-.++.+.+|+.
T Consensus 183 ~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~ 261 (328)
T TIGR00832 183 YLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFF 261 (328)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 34555667766653111 1222233344454433 233334444444432 112222233333346688899999
Q ss_pred HHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHh
Q 014841 89 LAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (417)
Q Consensus 89 lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl 127 (417)
+||.+.|.+|.+++.|.-+.-+++..|. .+++.-|.
T Consensus 262 lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 262 LTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 9999999999999999999999998875 35555444
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=73.51 E-value=13 Score=37.63 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCeeEEEeecCCcch
Q 014841 74 FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGN 118 (417)
Q Consensus 74 ~ipv~~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~ 118 (417)
.+-+.+.++..+|+.+||...|.++.++..|.-+.-|++-.|.+.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 567778888899999999999999999999999999999999863
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=68.16 E-value=16 Score=37.84 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhh----HHHHHHHHHHHHHHHHHHH
Q 014841 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW----FMPVNILLSFLIGSALAWI 92 (417)
Q Consensus 17 Vlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w----~ipv~~ll~~~ig~~lg~l 92 (417)
++++...|.+++ ..|+++.+....+.+.+.+.++|.-++-=|=+ .+++++.+.. .+-+-..+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~-~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLS-ADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999 89999656666788888888888766654433 3444444433 3334445555677777666
Q ss_pred HHHhhcCCCCCc
Q 014841 93 LIKITRTPPHLQ 104 (417)
Q Consensus 93 ~~~i~~~P~~~~ 104 (417)
+.+-.--|+.|+
T Consensus 105 l~~~~l~~~~wk 116 (378)
T PF05684_consen 105 LFGGFLGPEGWK 116 (378)
T ss_pred HHhhcccchHHH
Confidence 655443344333
No 15
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=62.18 E-value=70 Score=34.42 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHH------HHH
Q 014841 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF------LIG 86 (417)
Q Consensus 13 pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~------~ig 86 (417)
|-+.+++++..|+-.| +|.|+++.-.||.+++.-=.+.+|.++|.-+-+++-.| .--+-.+|+-+++.. +.|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasD-Ag~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASD-AGYVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccc-ceeEeHHhhHHHHHHHcCCChHHH
Confidence 5567777777786666 37999999999999999999999999999999888544 444556888777766 778
Q ss_pred HHHHHHHH
Q 014841 87 SALAWILI 94 (417)
Q Consensus 87 ~~lg~l~~ 94 (417)
...|+..+
T Consensus 157 i~~afa~v 164 (502)
T PF03806_consen 157 IAAAFAGV 164 (502)
T ss_pred HHHHHHHH
Confidence 88888765
No 16
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=59.12 E-value=35 Score=36.73 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHH------HHH
Q 014841 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF------LIG 86 (417)
Q Consensus 13 pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~------~ig 86 (417)
|-+.+++++..|.-.|. |.|.++.-.||.+.+.-=...+|..+|.-+-+++- +|.--+-++|+-+.+.. +.|
T Consensus 89 ~pLG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 55778888888876663 79999999999999998888888888766666554 23333778999877776 566
Q ss_pred HHHHHHHH
Q 014841 87 SALAWILI 94 (417)
Q Consensus 87 ~~lg~l~~ 94 (417)
.+.++..+
T Consensus 167 ia~~fagv 174 (508)
T PRK11339 167 LLAAIAGV 174 (508)
T ss_pred HHHHHHHH
Confidence 77776643
No 17
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=50.80 E-value=1e+02 Score=31.83 Aligned_cols=132 Identities=18% Similarity=0.149 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCh-hHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 014841 14 ILKVLLVTALGLVLAIDRIDLLGH-SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWI 92 (417)
Q Consensus 14 vlkVlli~~~G~~lA~~r~~iL~~-~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ig~~lg~l 92 (417)
...+++++.+|...+ ....... .....++....++| |.-+|..-+++++.+-..+.+..++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 446677788887776 3333333 56677777777765 788899999999999544556666666777777888
Q ss_pred HHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHhhhh
Q 014841 93 LIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV 164 (417)
Q Consensus 93 ~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~~ 164 (417)
+.|++|.|. ..+.-++=.|+|.=+.+-+.|-.+. . + =..-|+.--.+..++|+-+-+..+
T Consensus 313 ~~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~a~~--~-----~-Lv~pgvL~gvlGyaiGty~G~~va 372 (378)
T PF05684_consen 313 LGKLFKIDL----FELLVASNANIGGPATAPAVAAAKG--P-----S-LVPPGVLMGVLGYAIGTYLGLAVA 372 (378)
T ss_pred HHHHHCCCH----HHHHHHhhcccCCcchHHHHHHhcC--C-----c-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999987 5555555667777766644444332 1 0 233344444555566665555444
No 18
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=45.84 E-value=2.4e+02 Score=30.54 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHH------HHHHH
Q 014841 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF------LIGSA 88 (417)
Q Consensus 15 lkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~------~ig~~ 88 (417)
+.++++..+|+-.| +|.|.++.-.||.++|.-=...+|..+|.-+=+++- +|.--+-++|+.+.+.. +.|.+
T Consensus 87 Lg~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a~if~a~Gr~PlaGia 164 (513)
T TIGR00819 87 LGAILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGALIFHALGRHPLAGLA 164 (513)
T ss_pred HHHHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHHHH
Confidence 34444444554444 379999999999999988888888887765555543 23333778999888777 66777
Q ss_pred HHHHHH
Q 014841 89 LAWILI 94 (417)
Q Consensus 89 lg~l~~ 94 (417)
.+++.+
T Consensus 165 ~~fagv 170 (513)
T TIGR00819 165 AAFAGV 170 (513)
T ss_pred HHHHHH
Confidence 777654
No 19
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=41.86 E-value=4.1e+02 Score=27.34 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=60.5
Q ss_pred HHHhhcccccccchhhhhH--HHHH--HHHHHHHHHHHHHHHHHhhcCCCCCcCeeEE----EeecCCcchhHHHHHHHh
Q 014841 56 IGSNLAETITYQSLISLWF--MPVN--ILLSFLIGSALAWILIKITRTPPHLQGLVIG----CCSAGNMGNLLLIIVPAV 127 (417)
Q Consensus 56 iFs~l~~~it~~~i~~~w~--ipv~--~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~----~~~fgN~~~LPl~li~sl 127 (417)
.|+.++=+-+.+++++-|- .+.+ +.+...+..++|..+.+++..++. .|.... .++.|..... =+..
T Consensus 73 fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~----g~~f 147 (368)
T PF03616_consen 73 FFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAF----GPTF 147 (368)
T ss_pred HHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHH----HHHH
Confidence 3666666666777766551 2221 223346788888888899888764 343332 2233333222 1233
Q ss_pred hhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHhhhhhhhhhccc
Q 014841 128 CEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYL 172 (417)
Q Consensus 128 ~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~~~~ll~~~~ 172 (417)
++. +| -+.+.+-|+++.-+....|.++-=-.+-+..|+..
T Consensus 148 e~~----~G-~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 148 EEL----YG-WEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHh----cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 221 23 23377889999988887777765545545666653
No 20
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=41.43 E-value=1.2e+02 Score=30.46 Aligned_cols=105 Identities=22% Similarity=0.220 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHH--hhhhhhhHhhhhhHHHHHhhccccccc---ch--hhhhHHHHHHHHHHHH
Q 014841 13 PILKVLLVTALGLVLAIDRIDLLGHSVT--HSLNNLVFYVFNPALIGSNLAETITYQ---SL--ISLWFMPVNILLSFLI 85 (417)
Q Consensus 13 pvlkVlli~~~G~~lA~~r~~iL~~~~~--k~lS~lv~~vflP~LiFs~l~~~it~~---~i--~~~w~ipv~~ll~~~i 85 (417)
=++++++-..+|-.+. |. +.+... |..-+.+=...+-.++++...++...+ +. .+...+-+..+....+
T Consensus 163 L~~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV 238 (313)
T ss_pred HHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence 3566777777886665 22 223221 222223344445566666666653222 22 2233333345566688
Q ss_pred HHHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHH
Q 014841 86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (417)
Q Consensus 86 g~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li 124 (417)
.+.++|...|.++.+++.|--++.|++- -|+|+++.
T Consensus 239 ~l~~~~~~~r~~~~~~~d~iA~~F~gs~---Ksl~~gvp 274 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDRIAVLFCGSQ---KSLALGVP 274 (313)
T ss_pred HHHHHHHHHhhcCCChhhEEEEEEEcCc---CcchhHHH
Confidence 8899999999999999988777777664 44555554
No 21
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=40.81 E-value=91 Score=33.24 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHH
Q 014841 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG 86 (417)
Q Consensus 13 pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ig 86 (417)
|.-.|+ ....|.-.| +|.|+++.-.||.+++.-=.+.+|..+|.-+.++. .+|..-+..+|+.+.+...+|
T Consensus 91 PLG~VL-v~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~-asDaayVVlpPlaAmiF~a~G 161 (516)
T COG2978 91 PLGTVL-VVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHI-ASDAAYVVLPPLAAMIFIALG 161 (516)
T ss_pred chHHHH-HHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHH-HhhcceeEecchHHHHHHHhC
Confidence 333343 334443334 38999999999999999999999999999998875 455566667888777776443
No 22
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=40.77 E-value=6.9 Score=42.99 Aligned_cols=100 Identities=16% Similarity=0.291 Sum_probs=67.5
Q ss_pred HhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCC
Q 014841 58 SNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRT--PPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPF 135 (417)
Q Consensus 58 s~l~~~it~~~i~~~w~ipv~~ll~~~ig~~lg~l~~~i~~~--P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pf 135 (417)
+||=|. .+++-+||+..+ .++..++|..++...+- --+|. +++.||+++=...+|+.++||...+. .
T Consensus 432 trlMkk--YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwW-g~~va~~ia~vf~iPigii~AtTNq~---~ 500 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWW-GLLVACAIAFVFTIPIGIIQATTNQT---P 500 (761)
T ss_pred HHHHHH--hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchH-HHHHHHHHHHHHhccHHHhhhhccCC---c
Confidence 444444 788889998655 23345555555555544 22333 35667788889999999999997652 2
Q ss_pred CCchhhhhhhhHHHHHHHHHhHHHHhhhhhhhhh
Q 014841 136 GDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (417)
Q Consensus 136 g~~~~~~~~G~aYi~~~~~v~~i~~~t~~~~ll~ 169 (417)
|- ..-.+.=+.|+.=...+.+++.-+|||.-|+
T Consensus 501 GL-NiitE~i~Gy~~PgrPiAn~~FK~yGyism~ 533 (761)
T KOG2262|consen 501 GL-NIITEYIIGYIYPGRPIANLCFKTYGYISMT 533 (761)
T ss_pred cH-HHHHHHHHHhhcCCchHHHHHHHHhchhhHH
Confidence 21 1244666677777778999999999998665
No 23
>PRK11677 hypothetical protein; Provisional
Probab=38.54 E-value=33 Score=30.30 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 014841 79 ILLSFLIGSALAWILIKITRT 99 (417)
Q Consensus 79 ~ll~~~ig~~lg~l~~~i~~~ 99 (417)
+++.+++|.++|+++.|++..
T Consensus 6 a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 348889999999999997543
No 24
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=37.34 E-value=82 Score=34.33 Aligned_cols=176 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhh-hHhhhhhHHHHHhhcccccccchhhhh--------
Q 014841 3 ILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNL-VFYVFNPALIGSNLAETITYQSLISLW-------- 73 (417)
Q Consensus 3 ~~~l~~~a~~pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~l-v~~vflP~LiFs~l~~~it~~~i~~~w-------- 73 (417)
+.+++ .-.|++-+.+++++|+++. |..+ |.+|-= +--++.=.|++.+++.++... +++..
T Consensus 3 ~~~~l--~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~-v~~~gl~lFvy~v 71 (562)
T TIGR03802 3 LHNLL--RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPG-VKAVFFALFIFAI 71 (562)
T ss_pred HHHHH--HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHh
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCC
Q 014841 74 -----------------FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFG 136 (417)
Q Consensus 74 -----------------~ipv~~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg 136 (417)
-.-+.+++..++|.++.|...|++..|. ...+-...|=.+|=|-. =.|...-+..+.+
T Consensus 72 G~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~----~~~~Gl~aGalT~tp~l-~aA~~a~~~~~~~ 146 (562)
T TIGR03802 72 GYEVGPQFFASLKKDGLREIILALVFAVSGLITVYALAKIFGLDK----GTAAGLAAGGLTQSAVI-GTAGDAIEKLGLS 146 (562)
T ss_pred hhccCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHhchhhccHHH-HHHHHHHHhcCCC
Q ss_pred Cc-------hhhhhhhhHHHHHHHHHhHH-HHhhhhhhhhhcccccccccCCCCCCccccccCCCCCC
Q 014841 137 DT-------SVCSSYGKAYASLSMAVGAI-YIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESS 196 (417)
Q Consensus 137 ~~-------~~~~~~G~aYi~~~~~v~~i-~~~t~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (417)
++ +....++++|. +-.+|.+ +.-...++++|.+.++..++.+++.+...+..+.++..
T Consensus 147 ~~~~~~~~~~~avgYav~Yp--fGvig~i~~~~~~~p~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 212 (562)
T TIGR03802 147 PEQKTAYQGNVAVAYAVTYI--FGTIGVIIVLVNILPWLMGIDLREAAKKLEAELHGGNDVLGVGQSA 212 (562)
T ss_pred cchhhccccccceeeehhhh--hHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccCcccccccccc
No 25
>PRK03818 putative transporter; Validated
Probab=36.82 E-value=1.3e+02 Score=32.87 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=70.7
Q ss_pred cCC-CChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhh-hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCeeEE
Q 014841 32 IDL-LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIG 109 (417)
Q Consensus 32 ~~i-L~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~-~w~ipv~~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~ 109 (417)
.|. .++.+..-+.++-+.+|+=|. -.+-|+++- +++++ =|-..+..++.++++.+++|+..++++.|. ...+
T Consensus 50 ~~~~~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f~-~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 123 (552)
T PRK03818 50 FGLTLDSDMLHFIQEFGLILFVYTI-GIQVGPGFF-SSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL----PVML 123 (552)
T ss_pred cCcccChHHHHHHHHHHHHHHHHHH-hhcccHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHH
Confidence 344 445555556666666666442 334444441 23443 244555677888899999999999999998 4444
Q ss_pred EeecCCcchhHH-HHH-HHhhhcCCCC-CCCchhhhhhhhHHHHHHHHHhHHHHhhhhhhhhhccc
Q 014841 110 CCSAGNMGNLLL-IIV-PAVCEESNSP-FGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYL 172 (417)
Q Consensus 110 ~~~fgN~~~LPl-~li-~sl~~~~~~p-fg~~~~~~~~G~aYi~~~~~v~~i~~~t~~~~ll~~~~ 172 (417)
-...|-.+|=|- .-. +++ ++.+.. -..++....++++|.. -.++.++.-.+.++++|.+.
T Consensus 124 G~~aGa~T~tp~l~aa~~~~-~~~~~~~~~~~~~a~gYa~~Yp~--g~i~~il~~~~~~~~~~~~~ 186 (552)
T PRK03818 124 GIFSGAVTNTPALGAGQQIL-RDLGTPGDLVDQMGMGYAMAYPF--GICGILLSMWLIRLIFRINV 186 (552)
T ss_pred HHhhccccccHHHHHHHHHH-hccCCCccccCCcchhhHhHhHH--HHHHHHHHHHHHHHHhCCCh
Confidence 444454555443 222 233 211110 0112234666666653 23444543336677777653
No 26
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.92 E-value=54 Score=24.63 Aligned_cols=26 Identities=35% Similarity=0.678 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014841 73 WFMPVNILLSFLIGSALAWILIKITR 98 (417)
Q Consensus 73 w~ipv~~ll~~~ig~~lg~l~~~i~~ 98 (417)
++..+.+++++++|+++||++....+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788899999999998875443
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=34.36 E-value=1e+02 Score=31.07 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhH-HHHHHHHHHHHHHHHHH
Q 014841 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSALAW 91 (417)
Q Consensus 13 pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~-ipv~~ll~~~ig~~lg~ 91 (417)
.++..++-..+|.++. . ++++.|+.+++=+- +..|-.+ --+|-+++++++.+.++ .-+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG--N---ld~~~~~~l~~Gi~-f~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG--N---LDPDMRKFLTKGGP-LLIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh--c---cchhhHHHHhccce-EeHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466788888998887 3 66666666665533 2334333 35899999999999864 44445566678888888
Q ss_pred HHHHhhcCCCCCcCeeEEEeecCCcchhHHHH
Q 014841 92 ILIKITRTPPHLQGLVIGCCSAGNMGNLLLII 123 (417)
Q Consensus 92 l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~l 123 (417)
.+.|.+|.+++. ....+...||.=-=|-++
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAV 267 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAI 267 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHH
Confidence 888999888744 222222267765445443
No 28
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=33.86 E-value=1.7e+02 Score=30.05 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhh---hhhhHhhhhhHHHHHhhc-ccccccchhhhhHHH-HHHHHHHHHHHHH-H
Q 014841 17 VLLVTALGLVLAIDRIDLLGHSVTHSL---NNLVFYVFNPALIGSNLA-ETITYQSLISLWFMP-VNILLSFLIGSAL-A 90 (417)
Q Consensus 17 Vlli~~~G~~lA~~r~~iL~~~~~k~l---S~lv~~vflP~LiFs~l~-~~it~~~i~~~w~ip-v~~ll~~~ig~~l-g 90 (417)
-..+...|+++. ..|+++++..... +|.+...+++.+++- ++ ...+++++.+.-=.| +-..+..++|..+ +
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 345667788887 8999998776554 445555577766652 23 446888888764112 2233334555444 4
Q ss_pred HHHHHhhcCCC
Q 014841 91 WILIKITRTPP 101 (417)
Q Consensus 91 ~l~~~i~~~P~ 101 (417)
+++.|+++.=+
T Consensus 284 ~lvGKllG~YP 294 (347)
T TIGR00783 284 AFLGKLMGMYP 294 (347)
T ss_pred HHHHHHhCCCh
Confidence 57888888766
No 29
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.40 E-value=40 Score=29.35 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 014841 79 ILLSFLIGSALAWILIKITRTP 100 (417)
Q Consensus 79 ~ll~~~ig~~lg~l~~~i~~~P 100 (417)
+++.+++|+++|+++.|++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999887654
No 30
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=28.53 E-value=46 Score=31.11 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhccc-ccccchhhhhHHHHHHHHHHHHHHHH-HHHHHHh
Q 014841 19 LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET-ITYQSLISLWFMPVNILLSFLIGSAL-AWILIKI 96 (417)
Q Consensus 19 li~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~-it~~~i~~~w~ipv~~ll~~~ig~~l-g~l~~~i 96 (417)
.....|+++. +....+.+-..++++...++ |=.++--+++++ ...+++++...--+..-+.+++|.++ |++..++
T Consensus 3 ~~li~Gi~lG--~~~~~~~~~~~~~~~~~L~l-LLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 3 IALILGILLG--YFLRPPFSLIDKISTYALYL-LLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeHHHHHHHH--HHhcccccccccHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455676666 55555522223444444333 224556688877 67778885553333334444445444 4555666
Q ss_pred hcCCCCCcCeeEEEeecC
Q 014841 97 TRTPPHLQGLVIGCCSAG 114 (417)
Q Consensus 97 ~~~P~~~~~~vv~~~~fg 114 (417)
++.|- +...-.+.+||
T Consensus 80 l~~~~--~~~lav~sG~G 95 (191)
T PF03956_consen 80 LGLSL--KESLAVASGFG 95 (191)
T ss_pred hcCCH--HHHHHHHccCc
Confidence 65443 33333344444
No 31
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.90 E-value=94 Score=24.42 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 014841 71 SLWFMPVNILLSFLIGSALAWILIK 95 (417)
Q Consensus 71 ~~w~ipv~~ll~~~ig~~lg~l~~~ 95 (417)
+.|...+.+.++.++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565558888889999999987663
No 32
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=27.58 E-value=7.3e+02 Score=26.00 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHhHHHH
Q 014841 325 LIMGIIAIRYILLPLLGI 342 (417)
Q Consensus 325 ~iv~i~~~RliilPiigi 342 (417)
.+....+.|++..|++-+
T Consensus 339 ~l~i~s~~R~iFIPlf~l 356 (437)
T TIGR00939 339 WLPILSFLRVLFIPLFLL 356 (437)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 677788999999999843
No 33
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=27.24 E-value=65 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=19.3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014841 65 TYQSLISLWFMPVNILLSFLIGSALAWILIKITR 98 (417)
Q Consensus 65 t~~~i~~~w~ipv~~ll~~~ig~~lg~l~~~i~~ 98 (417)
+++|+.++ ++++.++.+.+||+..+-++
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHhH
Confidence 56777777 44566677778888776554
No 34
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=26.01 E-value=3.6e+02 Score=27.44 Aligned_cols=113 Identities=18% Similarity=0.367 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHH---HHHHHHHHHH
Q 014841 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF---LIGSALAWIL 93 (417)
Q Consensus 17 Vlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~---~ig~~lg~l~ 93 (417)
.++++..|.++|.--++-+ .+...++++..+. +++-+|+.=+..++.+ .|++++..+ +.-.++.+..
T Consensus 250 ~v~vsi~gLi~aLtPf~~l--pgs~elgtv~lY~-----~v~vias~Ad~~~i~t---aP~~i~~gf~il~~h~~v~f~~ 319 (384)
T COG5505 250 LVLVSITGLIIALTPFERL--PGSQELGTVLLYL-----FVVVIASPADLRLIVT---APLIILFGFIILISHLAVSFAA 319 (384)
T ss_pred ehHHHHHHHHHHhCccccC--CchhhhhHHHHHH-----HHHHhccchhHHHHHh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777877774223333 4556777776664 5677888877777777 777766655 3344566777
Q ss_pred HHhhcCCCCCcCeeEEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHH
Q 014841 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (417)
Q Consensus 94 ~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~G~aYi~~~~~v~~i 158 (417)
.|++|+. |-...+.|+++-+| |-..+-.+..++.+|+-..+.+|.+
T Consensus 320 ~KlF~~d------------------L~~i~~AslAniGG-~~sAp~~A~A~nr~lv~~gvlmg~l 365 (384)
T COG5505 320 GKLFRVD------------------LEEILLASLANIGG-PTSAPAMAIAKNRELVAPGVLMGTL 365 (384)
T ss_pred HHHHHhH------------------HHHHHHHHHhccCC-ccchhHHHhhcCchhcchHHHHHHH
Confidence 7888874 45566777766544 3444555667778888766655544
No 35
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=25.77 E-value=1.3e+02 Score=26.77 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=35.0
Q ss_pred HHHHhhcccccccchhh---hhH-HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014841 55 LIGSNLAETITYQSLIS---LWF-MPVNILLSFLIGSALAWILIKITRTPP 101 (417)
Q Consensus 55 LiFs~l~~~it~~~i~~---~w~-ipv~~ll~~~ig~~lg~l~~~i~~~P~ 101 (417)
++-..+|.++|.+++++ +|. .-+..+++..++.+.+|+..|.++.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 45678888887766554 443 444456666889999999999999887
No 36
>PRK05326 potassium/proton antiporter; Reviewed
Probab=25.71 E-value=3.4e+02 Score=29.40 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHH-HHHHHHHH-HHHHHHHHHhhcC
Q 014841 22 ALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIG-SALAWILIKITRT 99 (417)
Q Consensus 22 ~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~-~ll~~~ig-~~lg~l~~~i~~~ 99 (417)
..|..++ +......+..++..+-.-.++.|. +|..+|-.++.+++.+.|..-+- .++...++ .+..|+..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4455555 444444444455555556677765 79999999999988776432221 11122222 2333444566677
Q ss_pred CCCCcCeeEEEeecCCcchhHHHHH
Q 014841 100 PPHLQGLVIGCCSAGNMGNLLLIIV 124 (417)
Q Consensus 100 P~~~~~~vv~~~~fgN~~~LPl~li 124 (417)
|.+.+-.+--+ |-=|..|+++-
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 76655443332 45777887665
No 37
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=23.90 E-value=1.3e+02 Score=30.44 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhh-hHHHHHHHHHHHHHHHHHHHH
Q 014841 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWIL 93 (417)
Q Consensus 15 lkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~-w~ipv~~ll~~~ig~~lg~l~ 93 (417)
+++++...+|..+. . ++++-|+..++= .++.+|+-+|. +|.+++++++.+- +..++-.+...++...+++.+
T Consensus 174 i~allplliG~~lg--n---l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG--N---LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH--h---HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 55668888998776 2 666666555544 44499999888 9999999999877 455554444455555556677
Q ss_pred HHhhcCCCCCcCeeEEEeecCCcchhHHH
Q 014841 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLI 122 (417)
Q Consensus 94 ~~i~~~P~~~~~~vv~~~~fgN~~~LPl~ 122 (417)
-|+++..+...+ +-...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g-~a~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAG-AAAGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcch-HHHHHHHHHHHHHHHH
Confidence 788854442221 2222345555444444
No 38
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=23.88 E-value=2.3e+02 Score=29.89 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=77.2
Q ss_pred HHHHHHH------HHHHHHHHHHHhhccCCCChhHHhhhhhhh-----HhhhhhHHHHHhhc---ccccccchhhhhHHH
Q 014841 11 LMPILKV------LLVTALGLVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLA---ETITYQSLISLWFMP 76 (417)
Q Consensus 11 ~~pvlkV------lli~~~G~~lA~~r~~iL~~~~~k~lS~lv-----~~vflP~LiFs~l~---~~it~~~i~~~w~ip 76 (417)
=.|++|= +++.....++. +.|+++++..+.+.+.. .++|.-||+-.++= +.+=.+...++ +|
T Consensus 50 riPi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~--~p 125 (414)
T PF03390_consen 50 RIPILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF--IP 125 (414)
T ss_pred hChhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--HH
Confidence 3477776 66667778888 89999999999998876 46788888876653 33334455555 66
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC--CcCeeEEEeecCC-cchhHHHHHHHh
Q 014841 77 VNILLSFLIGSALAWILIKITRTPPH--LQGLVIGCCSAGN-MGNLLLIIVPAV 127 (417)
Q Consensus 77 v~~ll~~~ig~~lg~l~~~i~~~P~~--~~~~vv~~~~fgN-~~~LPl~li~sl 127 (417)
. ++...+.+.++|-++-.++....+ +.+-+++.-+=|| -|.+|++.+.+=
T Consensus 126 ~-il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~ 178 (414)
T PF03390_consen 126 P-ILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAE 178 (414)
T ss_pred H-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHH
Confidence 6 566666777777777777766543 4445555555555 799999987654
No 39
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=22.50 E-value=4.9e+02 Score=27.27 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhccCCCChhHHhhhhhhh-----HhhhhhHHHHHhhc---ccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 014841 20 VTALGLVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLA---ETITYQSLISLWFMPVNILLSFLIGSALAW 91 (417)
Q Consensus 20 i~~~G~~lA~~r~~iL~~~~~k~lS~lv-----~~vflP~LiFs~l~---~~it~~~i~~~w~ipv~~ll~~~ig~~lg~ 91 (417)
...+-.++- ..|+++++..|..++.. .++|.+||+--++= +.+=.+..+++ +|. ++...+.+.+.|-
T Consensus 82 ~~fvaa~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g~ 156 (438)
T COG3493 82 ALFVAAYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVGI 156 (438)
T ss_pred HHHHHHHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHHH
Confidence 344445566 78999999999998875 68999999987653 23345556666 333 4445555556666
Q ss_pred HHHHhhcCCCC--CcCeeEEEeecCC-cchhHHHHHHHh
Q 014841 92 ILIKITRTPPH--LQGLVIGCCSAGN-MGNLLLIIVPAV 127 (417)
Q Consensus 92 l~~~i~~~P~~--~~~~vv~~~~fgN-~~~LPl~li~sl 127 (417)
++-.++..+.+ +.+-+++.-+=|| -|.+|++.+.|=
T Consensus 157 lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 157 LVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 66666666553 4555555554444 589999988653
No 40
>PRK01844 hypothetical protein; Provisional
Probab=21.81 E-value=1.4e+02 Score=23.57 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 014841 72 LWFMPVNILLSFLIGSALAWILIK 95 (417)
Q Consensus 72 ~w~ipv~~ll~~~ig~~lg~l~~~ 95 (417)
.|+..+.+++..++|.+.|+.+.|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555567888899999988764
No 41
>COG2323 Predicted membrane protein [Function unknown]
Probab=21.64 E-value=2.8e+02 Score=26.65 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 014841 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWIL 93 (417)
Q Consensus 14 vlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ig~~lg~l~ 93 (417)
++|-+++..+++++. | -.+||++|++-..=|.=.++...++.....++=...|...+.+++..++..++.|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655 3 467899999999999999999999999988887777777776777778888888888
Q ss_pred HHhhcCCC
Q 014841 94 IKITRTPP 101 (417)
Q Consensus 94 ~~i~~~P~ 101 (417)
.|--++-+
T Consensus 81 ~ks~~~r~ 88 (224)
T COG2323 81 LKSRKLRK 88 (224)
T ss_pred hccHHHHH
Confidence 77665544
No 42
>PRK04972 putative transporter; Provisional
Probab=21.43 E-value=2.7e+02 Score=30.43 Aligned_cols=153 Identities=18% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhhhhH-hhhhhHHHHHhhcccccccchhhhh------------------
Q 014841 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVF-YVFNPALIGSNLAETITYQSLISLW------------------ 73 (417)
Q Consensus 13 pvlkVlli~~~G~~lA~~r~~iL~~~~~k~lS~lv~-~vflP~LiFs~l~~~it~~~i~~~w------------------ 73 (417)
|++-+.+++++|+++. |..+ |.+|-=.. -++.=.|++.+++.++ .+.++++.
T Consensus 13 ~~~~lf~~i~lG~~lG--~i~~------~~~~LG~~~g~L~vgl~~g~~~~~~-~~~~~~~gl~lF~~~vG~~~Gp~F~~ 83 (558)
T PRK04972 13 YILLLFVVLALGLCLG--KLRL------GSIQLGNSIGVLVVSLLLGQQHFSI-NTDALNLGFMLFIFCVGVEAGPNFFS 83 (558)
T ss_pred ChHHHHHHHHHHHhhh--ceEE------eeEecCcchHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHH--HHHHHhhhcCCCCCCCchhhhhh
Q 014841 74 -------FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLL--IIVPAVCEESNSPFGDTSVCSSY 144 (417)
Q Consensus 74 -------~ipv~~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl--~li~sl~~~~~~pfg~~~~~~~~ 144 (417)
-.-+..++.++++.++++...|+++.+. ...+-...|=.+|=|- +-.+++.+..-+|-...+...+-
T Consensus 84 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~aGa~T~tp~l~~a~~~~~~~~~~~~~~~~~~~~~ 159 (558)
T PRK04972 84 IFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI----GLTAGMLAGSMTSTPVLVGAGDTLRHSGAESRQLSLALDNL 159 (558)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhhccccCcHHHHHHHHHHhccCccccchhcccCcc
Q ss_pred hhHHHHHHH--HHhHHHHhhhhhhhhhccccccccc
Q 014841 145 GKAYASLSM--AVGAIYIWTYVYYVMSLYLNKSVSD 178 (417)
Q Consensus 145 G~aYi~~~~--~v~~i~~~t~~~~ll~~~~~~~~~~ 178 (417)
+++|...|- .++.++.=++.++++|.+.++..++
T Consensus 160 ~vgYa~~y~~g~i~~i~~~~~~p~l~ridl~~e~~~ 195 (558)
T PRK04972 160 SLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQ 195 (558)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
No 43
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=21.41 E-value=1.5e+02 Score=30.54 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=34.1
Q ss_pred HHHHhhcccccccc---hhhhhHHHHHHHH-HHHHHHHHHHHHHHhhcCCC
Q 014841 55 LIGSNLAETITYQS---LISLWFMPVNILL-SFLIGSALAWILIKITRTPP 101 (417)
Q Consensus 55 LiFs~l~~~it~~~---i~~~w~ipv~~ll-~~~ig~~lg~l~~~i~~~P~ 101 (417)
.+-.++|.++|.|+ +++.|++-+.+++ +..+|..+||+..|.-+.|+
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~ 116 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPG 116 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44567777776654 5666766555544 44889999999999998886
No 44
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=21.29 E-value=2.3e+02 Score=29.30 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=48.9
Q ss_pred hhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014841 37 HSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM-PVNILLSFLIGSALAWILIKITRTPP 101 (417)
Q Consensus 37 ~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~i-pv~~ll~~~ig~~lg~l~~~i~~~P~ 101 (417)
++..+++..+-..+|.| +-|.+.|-+++++.+.+.|.. .+-+.+....=.+..|+..|.++.++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~ 328 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSK 328 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 67888888888888887 679999999999999998877 33333333444555788889999655
No 45
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=21.19 E-value=4.4e+02 Score=27.53 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--hccCC--CChhHHhhhhhhhHhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 014841 18 LLVTALGLVLAI--DRIDL--LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWIL 93 (417)
Q Consensus 18 lli~~~G~~lA~--~r~~i--L~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~~i~~~w~ipv~~ll~~~ig~~lg~l~ 93 (417)
......|.++.. +|.+. ++.+..+.+|++...+|+=+=+-| +.+.++.++| +|+-+++..-+....-+..
T Consensus 249 v~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~Alms-----L~L~~l~~~a-~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 249 VWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMS-----LQLWELADLA-GPIALILLVQVMFMALYAI 322 (398)
T ss_pred HHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhc-CCCCCcCeeEEEeecCCc-chhHHHHH--HHhhhcCCCCCCCchhh
Q 014841 94 IKITR-TPPHLQGLVIGCCSAGNM-GNLLLIIV--PAVCEESNSPFGDTSVC 141 (417)
Q Consensus 94 ~~i~~-~P~~~~~~vv~~~~fgN~-~~LPl~li--~sl~~~~~~pfg~~~~~ 141 (417)
--.+| .+|+|..-+++++-+|-. |.=|.++. +|+|++ ||.+.++
T Consensus 323 fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~----yg~s~~a 370 (398)
T TIGR00210 323 FVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTER----FGPSHQA 370 (398)
T ss_pred HHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhc----cCCCCcc
No 46
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=20.69 E-value=1e+02 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=14.7
Q ss_pred hhhhhhhHHHHHHHHHhHHH
Q 014841 140 VCSSYGKAYASLSMAVGAIY 159 (417)
Q Consensus 140 ~~~~~G~aYi~~~~~v~~i~ 159 (417)
+..++|++|+++..++...+
T Consensus 12 ~aiDqgiay~Lm~~Al~~ty 31 (34)
T PF06376_consen 12 KAIDQGIAYMLMLVALVVTY 31 (34)
T ss_pred chhhHHHHHHHHHHHHHHHh
Confidence 36799999999877654433
Done!