Query 014841
Match_columns 417
No_of_seqs 113 out of 229
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.4 0.001 3.5E-08 65.8 12.5 136 259-413 20-156 (332)
2 3zux_A Transporter, ASBTNM; tr 89.7 1 3.6E-05 44.0 8.8 47 77-124 232-278 (332)
3 4f4l_A ION transport protein; 12.1 3.3E+02 0.011 21.5 5.3 51 113-163 36-88 (112)
4 1zcd_A Na(+)/H(+) antiporter 1 11.0 1.5E+02 0.005 29.5 3.2 97 36-132 248-353 (388)
5 2k1a_A Integrin alpha-IIB; sin 6.9 5.9E+02 0.02 16.9 4.6 34 318-355 5-38 (42)
6 1q90_G Cytochrome B6F complex 6.6 1.8E+02 0.0062 19.0 1.1 10 264-273 6-15 (37)
7 1q90_M Cytochrome B6F complex 5.7 6.9E+02 0.023 16.4 4.1 23 76-98 10-32 (39)
8 2nwl_A GLTPH, glutamate sympor 5.4 8.1E+02 0.028 24.1 5.8 54 49-102 55-112 (422)
9 1vf5_F Protein PET M; photosyn 5.0 7.3E+02 0.025 15.9 3.9 22 77-98 10-31 (35)
10 2knc_A Integrin alpha-IIB; tra 4.8 9.2E+02 0.031 16.9 4.4 36 316-355 5-40 (54)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.44 E-value=0.001 Score=65.78 Aligned_cols=136 Identities=7% Similarity=-0.008 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHhcchhhhhccccCCCChhhhHHHHHHhhhhhhhHHHHhhhhhccc-ccccCCCCchhhHHHHHHHHHHH
Q 014841 259 STIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILL 337 (417)
Q Consensus 259 p~ia~ilg~iig~iP~Lr~lff~~~~pL~~i~ds~~~lG~a~VP~~llvLGa~L~~-g~~~s~l~~~~iv~i~~~Rliil 337 (417)
-++..+++.++|..-|=. ..++. ..-...+.++++..|.++.. .+++.--.+|......+.+++++
T Consensus 20 ~~l~i~~~~~lg~~~P~~---------~~~~~----~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~ 86 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDT---------FKWAG----PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIM 86 (332)
T ss_dssp HHHHHHHHHHHHHHCGGG---------TGGGG----GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchh---------hhhhH----HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 366777777777653321 11121 12245788999999999973 22222235677888899999999
Q ss_pred hHHHHHHHHHHHHhCCCCCChHHHHHHHhccCCchhHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014841 338 PLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 413 (417)
Q Consensus 338 Piigi~iv~~~~k~g~i~~Dpl~~FVl~L~~~~PpA~~l~~i~~l~~~~e~e~s~il~wqY~~~~vslt~~~~~~l 413 (417)
|+++.++.+.. +.||.+.-.+++..+.|++.+-..+|++.|....-+.+.-..+-+++.+.+|+|..+++
T Consensus 87 Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 87 PATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988753 67999999999999999999877889988655444555555889999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=89.72 E-value=1 Score=44.03 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcCeeEEEeecCCcchhHHHHH
Q 014841 77 VNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (417)
Q Consensus 77 v~~ll~~~ig~~lg~l~~~i~~~P~~~~~~vv~~~~fgN~~~LPl~li 124 (417)
+..++.+.+|+.+||.+.|.+|.|++.+.-+.-.|+..|++ +-+.+.
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~-lai~lA 278 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSG-LAAALA 278 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHH-HHHHHH
Confidence 34667789999999999999999998888777778899983 444443
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=12.09 E-value=3.3e+02 Score=21.52 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=29.0
Q ss_pred cCCcchhHHHHHHHhhhcC-CC-CCCCchhhhhhhhHHHHHHHHHhHHHHhhh
Q 014841 113 AGNMGNLLLIIVPAVCEES-NS-PFGDTSVCSSYGKAYASLSMAVGAIYIWTY 163 (417)
Q Consensus 113 fgN~~~LPl~li~sl~~~~-~~-pfg~~~~~~~~G~aYi~~~~~v~~i~~~t~ 163 (417)
|+|.++=-+.+.+-++.|+ .. -..+.......+..|+..+..+++.+.-..
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNL 88 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNL 88 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777778787664 11 111111122345567777777777665544
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=11.03 E-value=1.5e+02 Score=29.50 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=62.0
Q ss_pred ChhHHhhhhhhhHhhhhhHHHHHhhccccccc---chhhh--hHHHHHHHHHHHHH-HHHHHHHHHhh--cCCCCCcC-e
Q 014841 36 GHSVTHSLNNLVFYVFNPALIGSNLAETITYQ---SLISL--WFMPVNILLSFLIG-SALAWILIKIT--RTPPHLQG-L 106 (417)
Q Consensus 36 ~~~~~k~lS~lv~~vflP~LiFs~l~~~it~~---~i~~~--w~ipv~~ll~~~ig-~~lg~l~~~i~--~~P~~~~~-~ 106 (417)
.++-.+.+...+-.+++|---|.|.|=+++.+ ++.+- |-+-+-.++.=.+| +..+|+..|.. |.|+.++. .
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 46678888999999999999999999999874 33221 11111111111334 23356666555 78876533 4
Q ss_pred eEEEeecCCcchhHHHHHHHhhhcCC
Q 014841 107 VIGCCSAGNMGNLLLIIVPAVCEESN 132 (417)
Q Consensus 107 vv~~~~fgN~~~LPl~li~sl~~~~~ 132 (417)
..+.+.-.|++-..=.++.+++-+++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~~ 353 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGSV 353 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHhccchHHHHHHHHHhccCC
Confidence 45556667888877788888876543
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.87 E-value=5.9e+02 Score=16.91 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=24.3
Q ss_pred cCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 014841 318 RSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG 355 (417)
Q Consensus 318 ~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~ 355 (417)
..++|++.++..+++=++++. +++..++|.|+..
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~----li~~~LwK~GFFk 38 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLT----ILVLAMWKVGFFK 38 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHTTTTC
T ss_pred cCCcchHHHHHHHHHHHHHHH----HHHHHHHHcCccc
Confidence 356888888887777776654 4556778888865
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=6.63 E-value=1.8e+02 Score=18.98 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=6.6
Q ss_pred HHHHHHhcch
Q 014841 264 IIGFVIGTIS 273 (417)
Q Consensus 264 ilg~iig~iP 273 (417)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4566777776
No 7
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.67 E-value=6.9e+02 Score=16.44 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 014841 76 PVNILLSFLIGSALAWILIKITR 98 (417)
Q Consensus 76 pv~~ll~~~ig~~lg~l~~~i~~ 98 (417)
..-+...+.+|..+|+++-|+-+
T Consensus 10 A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 10 ALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 33345566889999999988753
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=5.45 E-value=8.1e+02 Score=24.15 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred hhhhhHHHHHhhccccc-c--cchhhh-hHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014841 49 YVFNPALIGSNLAETIT-Y--QSLISL-WFMPVNILLSFLIGSALAWILIKITRTPPH 102 (417)
Q Consensus 49 ~vflP~LiFs~l~~~it-~--~~i~~~-w~ipv~~ll~~~ig~~lg~l~~~i~~~P~~ 102 (417)
....|=|+|..+...+. . ++..++ +-.-.+.++++.++..+|.++..++++-..
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45667789999988884 4 444444 356667788889999999999999987653
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.00 E-value=7.3e+02 Score=15.93 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 014841 77 VNILLSFLIGSALAWILIKITR 98 (417)
Q Consensus 77 v~~ll~~~ig~~lg~l~~~i~~ 98 (417)
+-+...+.+|..+|+++-|+-.
T Consensus 10 ~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 10 LLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhheeec
Confidence 3344566889999999888753
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.81 E-value=9.2e+02 Score=16.88 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=24.2
Q ss_pred cccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 014841 316 LKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG 355 (417)
Q Consensus 316 ~~~s~l~~~~iv~i~~~RliilPiigi~iv~~~~k~g~i~ 355 (417)
.+...+|++.++..+++=++++.+ ++..++|.|+..
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~l----i~~~LwK~GFFk 40 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTI----LVLAMWKVGFFK 40 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred ccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHcCccc
Confidence 345678888888888777776654 445556666654
Done!