Query 014841
Match_columns 417
No_of_seqs 113 out of 229
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 18:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014841.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014841hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 13.9 34 0.0025 20.1 1.2 29 253-281 5-33 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 6.6 88 0.0064 17.8 1.1 11 264-274 6-16 (30)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 5.0 2.5E+02 0.019 15.5 2.5 20 145-164 3-22 (30)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.2 1.2E+03 0.09 19.7 9.3 63 41-103 33-102 (405)
5 d1tm9a_ a.225.1.1 (A:) Hypothe 3.1 3.8E+02 0.028 19.6 2.9 15 342-356 98-112 (137)
6 d1tbaa_ a.15.1.1 (A:) TAF(II)2 3.0 1.7E+02 0.013 19.7 0.7 15 33-47 36-50 (67)
7 d1v54l_ f.23.6.1 (L:) Mitochon 3.0 5.9E+02 0.043 15.6 3.7 28 69-96 14-41 (46)
8 d1jb0m_ f.23.19.1 (M:) Subunit 2.4 2.8E+02 0.02 15.6 1.0 12 264-275 9-20 (31)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 2.4 5.4E+02 0.039 22.8 3.8 22 253-274 14-35 (444)
10 d1q90r_ f.23.12.1 (R:) ISP sub 2.3 3.3E+02 0.024 16.4 1.2 28 253-280 10-37 (39)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.86 E-value=34 Score=20.12 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=23.7
Q ss_pred hcccChhHHHHHHHHHHhcchhhhhcccc
Q 014841 253 KMIFAPSTIAAIIGFVIGTISPFRKVIVG 281 (417)
Q Consensus 253 ~~~~~Pp~ia~ilg~iig~iP~Lr~lff~ 281 (417)
+.|+|=-+.|.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 55666679999999999999888877764
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.60 E-value=88 Score=17.78 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=7.7
Q ss_pred HHHHHHhcchh
Q 014841 264 IIGFVIGTISP 274 (417)
Q Consensus 264 ilg~iig~iP~ 274 (417)
+.|++.|+||-
T Consensus 6 l~GivlGlipi 16 (30)
T d1q90g_ 6 LCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHhhHHH
Confidence 46777777773
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.97 E-value=2.5e+02 Score=15.49 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHhHHHHhhhh
Q 014841 145 GKAYASLSMAVGAIYIWTYV 164 (417)
Q Consensus 145 G~aYi~~~~~v~~i~~~t~~ 164 (417)
.++|+.+|.-+-+.+.|..-
T Consensus 3 ~i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 36899988876666666543
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.16 E-value=1.2e+03 Score=19.73 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=42.0
Q ss_pred hhhhhhhHh---hhhhHHHHHhhcccc-ccc--chhhhh-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014841 41 HSLNNLVFY---VFNPALIGSNLAETI-TYQ--SLISLW-FMPVNILLSFLIGSALAWILIKITRTPPHL 103 (417)
Q Consensus 41 k~lS~lv~~---vflP~LiFs~l~~~i-t~~--~i~~~w-~ipv~~ll~~~ig~~lg~l~~~i~~~P~~~ 103 (417)
+-++++-.+ ...+=|+|.++...+ +++ +..+.. -.-.+.++++.++..+|+++...+++....
T Consensus 33 ~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~ 102 (405)
T d2nwwa1 33 KPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI 102 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344444433 345667888887777 333 333443 455667788899999999999999987743
No 5
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=3.13 E-value=3.8e+02 Score=19.57 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=11.1
Q ss_pred HHHHHHHHHhCCCCC
Q 014841 342 IVIVKAAYRFGFIGS 356 (417)
Q Consensus 342 i~iv~~~~k~g~i~~ 356 (417)
.-+.+.++|+|++.|
T Consensus 98 fci~yflyhf~fl~d 112 (137)
T d1tm9a_ 98 FCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHTTCSCC
T ss_pred hhHHHHHHHhccccc
Confidence 345677899999885
No 6
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.04 E-value=1.7e+02 Score=19.70 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=13.1
Q ss_pred CCCChhHHhhhhhhh
Q 014841 33 DLLGHSVTHSLNNLV 47 (417)
Q Consensus 33 ~iL~~~~~k~lS~lv 47 (417)
.+|+++.+|+++.+.
T Consensus 36 s~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 36 TGFDAELRENIGSLS 50 (67)
T ss_dssp SSCCTTTHHHHTTCT
T ss_pred cccCHHHHHHHHHHh
Confidence 389999999999876
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.03 E-value=5.9e+02 Score=15.64 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014841 69 LISLWFMPVNILLSFLIGSALAWILIKI 96 (417)
Q Consensus 69 i~~~w~ipv~~ll~~~ig~~lg~l~~~i 96 (417)
+.+=|-+-.-..+++..|++.-++++|-
T Consensus 14 v~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 14 VENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccchHHHHHH
Confidence 3444556666778888999988888763
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=2.41 E-value=2.8e+02 Score=15.61 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=7.0
Q ss_pred HHHHHHhcchhh
Q 014841 264 IIGFVIGTISPF 275 (417)
Q Consensus 264 ilg~iig~iP~L 275 (417)
.++++|+++|-+
T Consensus 9 ~valvial~pg~ 20 (31)
T d1jb0m_ 9 YVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666666644
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=2.41 E-value=5.4e+02 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=14.0
Q ss_pred hcccChhHHHHHHHHHHhcchh
Q 014841 253 KMIFAPSTIAAIIGFVIGTISP 274 (417)
Q Consensus 253 ~~~~~Pp~ia~ilg~iig~iP~ 274 (417)
+.-+.--.++.++|++.|++-.
T Consensus 14 ~~~l~~~~la~liGi~~gl~~~ 35 (444)
T d1otsa_ 14 KTPLAILFMAAVVGTLVGLAAV 35 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4444455677788888886543
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.26 E-value=3.3e+02 Score=16.38 Aligned_cols=28 Identities=7% Similarity=-0.105 Sum_probs=17.2
Q ss_pred hcccChhHHHHHHHHHHhcchhhhhccc
Q 014841 253 KMIFAPSTIAAIIGFVIGTISPFRKVIV 280 (417)
Q Consensus 253 ~~~~~Pp~ia~ilg~iig~iP~Lr~lff 280 (417)
|+++|=-+.|++-+-..|+.-|.-+.|+
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccchhhhhhccceeEEec
Confidence 3344444777777777777666655554
Done!