BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014843
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EJQ|A Chain A, Conserved Hypothetical Protein (Ttha0227) From Thermo
Thermophilus Hb8
pdb|2EJQ|B Chain B, Conserved Hypothetical Protein (Ttha0227) From Thermo
Thermophilus Hb8
Length = 130
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 178 ELLERYWDLMPEYQGVTLDNLEIQRVIYGI--FPTYRDSPLPAAFNRILQFGDASGIQSP 235
EL+ER W+ +PE + +R + G+ FP + P R+ ++ D P
Sbjct: 8 ELVERLWEEVPE---------DFKRGLQGVHVFPEAKPEPGLEGVWRLGEYLDPG---PP 55
Query: 236 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVD 265
+FGGF L RH+ L G + V G+ D
Sbjct: 56 SAFGGFEDLGRHIA-LYYGSFLEVAGEGFD 84
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVSFGGF 241
D+ EY V L ++ + + + P F+ I+ FGD ++ + G
Sbjct: 214 DVSKEYADVELSHMYVDNAAMQL------AKAPKQFDVIVTGNMFGDILSDEASMLTGSI 267
Query: 242 GSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 296
G L + L + + G+YE G D + NP LSA+ L + +++ +Q+D
Sbjct: 268 GMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLATILSAAMLLRYSLNRAEQAD 323
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 177 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQ 233
EE+ + Y D+ E + + +DN +Q + R+ P F+ I+ FGD +
Sbjct: 226 EEVAKEYPDV--ELEHMLVDNAAMQLI--------RN---PRQFDVIVTENMFGDILSDE 272
Query: 234 SPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 292
+ + G G L + L G+YE V G D + NP LSA+ + + + +
Sbjct: 273 ASMITGSLGMLPSASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLE 332
Query: 293 QQSDVSPDFINELLYVNFQC 312
+++ + ++L ++
Sbjct: 333 EEAKAIEKAVEKVLAEGYRT 352
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 176 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGI 232
+EE+ Y D+ E+Q V + + R PA F+ ++ FGD
Sbjct: 199 VEEVGRGYPDVALEHQYVDAAAMHLVRS-------------PARFDVVVTGNIFGDILSD 245
Query: 233 QSPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRA 288
+ V G G L + LGR T V+E V G D + NP LSA+ + + A
Sbjct: 246 LASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHA 301
>pdb|2Q7S|A Chain A, Crystal Structure Of N-Formylglutamate Amidohydrolase
(Yp_297560.1) From Ralstonia Eutropha Jmp134 At 2.00 A
Resolution
pdb|2Q7S|B Chain B, Crystal Structure Of N-Formylglutamate Amidohydrolase
(Yp_297560.1) From Ralstonia Eutropha Jmp134 At 2.00 A
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 140 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 170
D+ V WEA P G L T+ YIDP
Sbjct: 55 DTHVDALWEAVPRVGGTLLAATFPRVYIDPN 85
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 236 VSFGGFGSLTRHLGRLSTGVYEAV-RGDFVDSYSLSLLNPYMPNLSASWLFQ--RAMSAK 292
V G G G L+TG Y+ V RGDFV ++ L P L + L + RA+ A+
Sbjct: 195 VMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRAR 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,797,371
Number of Sequences: 62578
Number of extensions: 552803
Number of successful extensions: 1029
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 19
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)