BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014843
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3M8T9|LEU3_ANAVT 3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=leuB PE=3 SV=1
Length = 362
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 29/208 (13%)
Query: 96 VVKQIRSG---RKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPA 152
VV+++ G KP G+ RG + ++Y+ S + ++G ++ +E
Sbjct: 134 VVRELTGGIYFGKPRGIFTTETGEKRGV-----NTMVYTESEIDRIG----RIAFETARK 184
Query: 153 GSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYR 212
G L Q ++ +L + Y D+ E + +DN +Q V
Sbjct: 185 RRGKLCSVDKANVLDVSQLWRDRITKLSQEYPDV--ELSHLYVDNAAMQLV--------- 233
Query: 213 DSPLPAAFNRILQ---FGDASGIQSPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYS 268
P F+ I+ FGD + + G G L + LG GV+E V G D
Sbjct: 234 --RAPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAG 291
Query: 269 LSLLNPYMPNLSASWLFQRAMSAKQQSD 296
L NP LSA+ + + A++ Q +D
Sbjct: 292 LDKANPLAQVLSAAMMLRYALNQPQAAD 319
>sp|Q27UB0|PGXC_ASPNG Exopolygalacturonase C OS=Aspergillus niger GN=pgxC PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 140 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLE 199
DS Q +W+A PAGS +D ++ ++ QA W++ Q +T+ +
Sbjct: 136 DSYGQPWWDANPAGSSGIDNRPHLMSFKSSQATMKYFRSRKPIAWNVKLHGQDITVSHAI 195
Query: 200 IQRVIYGIFPTYRD 213
I G FP D
Sbjct: 196 IDATSTGSFPFNTD 209
>sp|A2QEW2|PGXC_ASPNC Probable exopolygalacturonase C OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgxC PE=3 SV=2
Length = 440
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 140 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLE 199
DS Q +W+A PAGS +D ++ ++ QA W++ Q +T+ +
Sbjct: 136 DSYGQPWWDANPAGSSGIDNRPHLMSFKSSQATMKYFRSRKPIAWNVKLHGQDITVSHAI 195
Query: 200 IQRVIYGIFPTYRD 213
I G FP D
Sbjct: 196 IDATSTGSFPFNTD 209
>sp|A0QRG8|MGTA_MYCS2 GDP-mannose-dependent alpha-mannosyltransferase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=mgtA PE=3
SV=1
Length = 375
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 196 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQF-----GDASGIQSPVSFGGFGSL--TRHL 248
D + + RV +FP PL R++ D + SP G +G L RHL
Sbjct: 54 DGVRVHRVPSRMFPKITSLPLGVPRPRMIGVLRGFDPDVVHLASPALLG-YGGLHAARHL 112
Query: 249 GRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSP 299
G S V++ F +SY + + + A+W + R + ++ ++P
Sbjct: 113 GVPSVAVFQTDVAGFAESYGMGVAS------RAAWAWTRHLHSRADRTLAP 157
>sp|C4R8P2|GATB_PICPG Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial
OS=Komagataella pastoris (strain GS115 / ATCC 20864)
GN=PET112 PE=3 SV=1
Length = 492
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 57 EGYSVSSICTYENAAVLLLAEGKILS--SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVG 114
EG + I YE V + + ++L+ +I D + + +VK+++ G KP + ++G
Sbjct: 406 EGPIIDLITKYELGEVDVTNDSELLAQVDSIIDDVLDTYPAIVKELQEGNKPGSINYLLG 465
Query: 115 SCAR 118
C R
Sbjct: 466 QCMR 469
>sp|Q9EVH5|LEU3_BUCUE 3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp.
Uroleucon erigeronensis GN=leuB PE=3 SV=1
Length = 364
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 177 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQ 233
+E++E+ + Y V L +L I I I P+ F+ IL FGD +
Sbjct: 206 KEIVEK---ISKNYPDVHLSHLYIDNAIMQIIKD------PSQFDVILCSNLFGDIVSDE 256
Query: 234 SPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 292
G G L + L + G+YE G D ++ NP LS S L + M+ K
Sbjct: 257 CAAITGSIGMLPSASLNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSVSMLVRHGMNLK 316
Query: 293 QQSD 296
+ +D
Sbjct: 317 KIAD 320
>sp|Q8KA30|PMBA_BUCAP Protein PmbA homolog OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=pmbA PE=3 SV=1
Length = 447
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 73 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 132
++ +EG S+H+ I N +++Q +S R + C++ KDNST +S
Sbjct: 152 IINSEGSFFSNHITIKVFANSLGMLEQYKSTRYSNYNCMIA-------KDNSTMQRDFSY 204
Query: 133 SSVKKVGDSE 142
S+ +K+ D E
Sbjct: 205 STSRKLDDLE 214
>sp|Q8YXA2|LEU3_NOSS1 3-isopropylmalate dehydrogenase OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=leuB PE=3 SV=1
Length = 362
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 181 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 237
+R +L EY V L +L + + P F+ I+ FGD + +
Sbjct: 206 DRITNLSQEYPDVELSHLYVDNAAMQLVRA------PKQFDTIVTGNLFGDILSDAAAML 259
Query: 238 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 296
G G L + LG GV+E V G D NP LSA+ + + A+ Q +D
Sbjct: 260 TGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYALDQPQAAD 319
>sp|Q2JTN8|LEU3_SYNJA 3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=leuB PE=3 SV=1
Length = 381
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 181 ERYWDLMPEYQGVTL-----DNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGI 232
ER + EY V L DN +Q V + P F+ IL FGD
Sbjct: 212 ERVTAIAAEYPDVELSHLYVDNAAMQLVRW-----------PKQFDVILTENLFGDILSD 260
Query: 233 QSPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA 291
++ + G G L + LG GVYE V G D NP LS + L + ++
Sbjct: 261 EAAMLTGSIGMLPSASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLRYSLDQ 320
Query: 292 KQQSDVSPDFINELLYVNFQC 312
Q +D + +L ++
Sbjct: 321 PQAADRIEQAVEAVLAQGYRT 341
>sp|Q9SA14|LEU31_ARATH 3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis
thaliana GN=IMDH1 PE=1 SV=2
Length = 404
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 181 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 237
+R L EY V L ++ + + RD P F+ I+ FGD ++ +
Sbjct: 245 KRVTALASEYPDVELSHMYVDNAAMQLV---RD---PKQFDTIVTNNIFGDILSDEASMI 298
Query: 238 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 296
G G L + LG G++E + G D NP LSA+ L + + ++ +
Sbjct: 299 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 358
Query: 297 VSPDFINELLYVNFQC 312
+ D + + L F+
Sbjct: 359 MIEDAVVDALNKGFRT 374
>sp|Q7VC80|LEU3_PROMA 3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain
SARG / CCMP1375 / SS120) GN=leuB PE=3 SV=1
Length = 362
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 217 PAAFNRILQ---FGDASGIQSPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLL 272
PA F+ IL FGD ++ + G G L + LG GV+E V G D +L
Sbjct: 235 PAQFDVILTSNLFGDIISDEAAMLTGSIGMLPSASLGEDGPGVFEPVHGSAPDIAHKNLA 294
Query: 273 NPYMPNLSASWLFQRA-MSAKQQSDVSPDFINELLYVNFQCM 313
NP LS + + + M K +D+ + I+++L F+ +
Sbjct: 295 NPIAMILSTAMMLRTGLMEYKAATDLE-NAIDKVLGKGFRTI 335
>sp|Q9FMT1|LEU33_ARATH 3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis
thaliana GN=IMDH3 PE=1 SV=1
Length = 409
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 181 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 237
+R L EY V L ++ + + RD P F+ I+ FGD ++ +
Sbjct: 248 KRVTALASEYPDVELSHMYVDNAAMQLI---RD---PKQFDTIVTNNIFGDILSDEASMI 301
Query: 238 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAM----SAK 292
G G L + LG G++E + G D NP LSA+ L + + +AK
Sbjct: 302 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 361
Query: 293 QQSDVSPDFINE 304
+ D D +N+
Sbjct: 362 RIEDAVVDALNK 373
>sp|Q845W3|LEU3_BURM1 3-isopropylmalate dehydrogenase OS=Burkholderia multivorans (strain
ATCC 17616 / 249) GN=leuB PE=3 SV=1
Length = 355
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVSFGGF 241
D+ EY V L ++ + + + P F+ I+ FGD ++ + G
Sbjct: 206 DVSKEYADVELSHMYVDNAAMQL------AKAPKQFDVIVTGNMFGDILSDEASMLTGSI 259
Query: 242 GSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 296
G L + L + + G+YE G D + NP LSA+ L + +++ +Q+D
Sbjct: 260 GMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLATILSAAMLLRYSLNRAEQAD 315
>sp|B0CJG1|MNMG_BRUSI tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
GN=mnmG PE=3 SV=1
Length = 636
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 110
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 111 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 170
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 171 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 226
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 227 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 286
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|Q8FY28|MNMG_BRUSU tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella suis biovar 1 (strain 1330) GN=mnmG PE=3
SV=1
Length = 636
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 110
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 111 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 170
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 171 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 226
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 227 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 286
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|A9M9E4|MNMG_BRUC2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=mnmG PE=3 SV=1
Length = 636
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 110
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 111 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 170
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 171 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 226
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 227 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 286
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|Q57AJ7|MNMG_BRUAB tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella abortus biovar 1 (strain 9-941) GN=mnmG PE=3
SV=1
Length = 636
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 110
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 111 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 170
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 171 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 226
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 227 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 286
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|Q2YR12|MNMG_BRUA2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella abortus (strain 2308) GN=mnmG PE=3 SV=1
Length = 636
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 110
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 111 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 170
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 171 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 226
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 227 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 286
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,555,403
Number of Sequences: 539616
Number of extensions: 7056424
Number of successful extensions: 14827
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 14806
Number of HSP's gapped (non-prelim): 57
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)