Query 014843
Match_columns 417
No_of_seqs 196 out of 255
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02463 lycopene beta cyclase 100.0 2.9E-33 6.4E-38 291.3 26.9 305 34-369 110-443 (447)
2 PLN02697 lycopene epsilon cycl 100.0 3.7E-30 8E-35 273.0 26.2 306 34-369 188-527 (529)
3 TIGR01790 carotene-cycl lycope 99.9 1.7E-25 3.6E-30 225.4 25.9 291 34-352 81-387 (388)
4 COG0644 FixC Dehydrogenases (f 99.9 1E-24 2.2E-29 222.7 26.7 244 30-291 87-333 (396)
5 PLN00093 geranylgeranyl diphos 99.9 2.6E-23 5.6E-28 216.8 24.1 248 33-313 127-398 (450)
6 TIGR02028 ChlP geranylgeranyl 99.9 5.1E-23 1.1E-27 210.7 24.2 250 33-315 88-361 (398)
7 PF05834 Lycopene_cycl: Lycope 99.9 4.5E-23 9.8E-28 209.5 22.3 273 34-344 83-367 (374)
8 PRK10015 oxidoreductase; Provi 99.9 1E-22 2.2E-27 210.7 21.7 267 32-311 102-393 (429)
9 TIGR02023 BchP-ChlP geranylger 99.9 5.2E-22 1.1E-26 201.5 25.4 232 33-290 87-336 (388)
10 PRK10157 putative oxidoreducta 99.9 4.3E-21 9.3E-26 198.4 20.6 268 31-311 101-392 (428)
11 TIGR02032 GG-red-SF geranylger 99.8 2.6E-18 5.7E-23 164.3 22.4 207 31-254 84-294 (295)
12 TIGR01789 lycopene_cycl lycope 99.8 3.8E-18 8.3E-23 173.7 19.8 249 33-339 84-359 (370)
13 PRK11445 putative oxidoreducta 99.8 2E-17 4.3E-22 166.3 21.3 200 34-259 95-302 (351)
14 TIGR01988 Ubi-OHases Ubiquinon 99.7 2E-15 4.4E-20 150.7 19.4 219 32-270 100-327 (385)
15 PRK07333 2-octaprenyl-6-methox 99.6 2E-14 4.3E-19 145.4 19.8 223 31-276 104-334 (403)
16 PRK07608 ubiquinone biosynthes 99.6 2E-14 4.2E-19 144.7 19.0 222 33-277 106-334 (388)
17 PRK09126 hypothetical protein; 99.6 1.4E-14 3.1E-19 146.1 18.0 220 31-270 103-331 (392)
18 PF01494 FAD_binding_3: FAD bi 99.6 6.8E-15 1.5E-19 143.3 14.2 232 29-277 102-343 (356)
19 PF04820 Trp_halogenase: Trypt 99.6 8.6E-15 1.9E-19 153.2 15.4 266 27-345 143-415 (454)
20 PRK08020 ubiF 2-octaprenyl-3-m 99.6 1.7E-13 3.6E-18 138.5 20.6 209 32-262 106-322 (391)
21 PRK06185 hypothetical protein; 99.6 2.2E-13 4.7E-18 138.4 21.3 225 31-276 101-336 (407)
22 PRK08243 4-hydroxybenzoate 3-m 99.6 5.3E-13 1.1E-17 135.8 24.0 240 35-294 100-355 (392)
23 PRK08013 oxidoreductase; Provi 99.6 1.2E-13 2.6E-18 141.0 19.4 226 31-277 104-337 (400)
24 PRK07045 putative monooxygenas 99.6 2.6E-13 5.6E-18 137.4 20.8 212 34-262 102-326 (388)
25 TIGR01984 UbiH 2-polyprenyl-6- 99.6 3.6E-13 7.9E-18 135.2 21.4 208 33-259 100-314 (382)
26 PRK08773 2-octaprenyl-3-methyl 99.6 2.2E-13 4.7E-18 138.1 19.7 227 31-277 106-337 (392)
27 PRK05732 2-octaprenyl-6-methox 99.5 3.2E-13 7E-18 136.0 18.8 211 33-262 107-323 (395)
28 PRK07364 2-octaprenyl-6-methox 99.5 5.3E-13 1.1E-17 135.7 19.7 224 31-277 114-349 (415)
29 PRK05714 2-octaprenyl-3-methyl 99.5 2.8E-12 6E-17 130.6 22.4 226 32-277 106-340 (405)
30 PRK08850 2-octaprenyl-6-methox 99.5 1.6E-12 3.6E-17 132.6 19.3 213 31-262 104-323 (405)
31 PRK07494 2-octaprenyl-6-methox 99.5 1.5E-12 3.3E-17 131.4 18.4 223 31-277 104-332 (388)
32 PRK08244 hypothetical protein; 99.5 5.9E-12 1.3E-16 132.1 22.8 221 32-276 94-323 (493)
33 COG0654 UbiH 2-polyprenyl-6-me 99.4 1.4E-11 2.9E-16 125.7 21.5 225 29-276 95-329 (387)
34 PRK06617 2-octaprenyl-6-methox 99.4 4.9E-12 1.1E-16 128.1 16.6 204 31-255 97-307 (374)
35 TIGR01989 COQ6 Ubiquinone bios 99.4 2E-11 4.3E-16 126.5 21.5 231 30-277 109-388 (437)
36 PRK08849 2-octaprenyl-3-methyl 99.4 5.2E-11 1.1E-15 120.9 20.3 221 31-277 103-329 (384)
37 PRK07190 hypothetical protein; 99.4 1.5E-10 3.4E-15 122.2 24.1 234 34-293 105-351 (487)
38 PRK06753 hypothetical protein; 99.3 3E-11 6.4E-16 121.2 17.3 203 32-255 92-304 (373)
39 PRK06183 mhpA 3-(3-hydroxyphen 99.3 1.7E-10 3.8E-15 122.6 23.9 237 32-291 107-360 (538)
40 PRK07588 hypothetical protein; 99.3 5.1E-10 1.1E-14 113.5 24.7 208 34-257 99-315 (391)
41 PRK06184 hypothetical protein; 99.3 2.6E-10 5.6E-15 120.1 21.9 211 33-261 104-321 (502)
42 PRK06996 hypothetical protein; 99.3 2.7E-10 5.8E-15 116.3 20.8 209 31-257 108-327 (398)
43 PRK08163 salicylate hydroxylas 99.3 1.9E-10 4.1E-15 116.3 18.7 206 34-256 105-321 (396)
44 PTZ00367 squalene epoxidase; P 99.3 4.3E-10 9.3E-15 121.2 22.4 287 35-381 128-475 (567)
45 PRK06834 hypothetical protein; 99.3 8E-10 1.7E-14 116.8 23.5 220 30-276 92-316 (488)
46 PRK07538 hypothetical protein; 99.3 3.8E-10 8.2E-15 115.7 19.8 211 34-257 98-333 (413)
47 PRK06847 hypothetical protein; 99.3 1.3E-09 2.9E-14 109.3 23.0 203 34-256 103-317 (375)
48 PRK05868 hypothetical protein; 99.2 6.7E-10 1.4E-14 113.0 20.8 206 35-257 102-318 (372)
49 PRK08294 phenol 2-monooxygenas 99.2 3.2E-09 6.8E-14 115.8 25.9 275 34-329 137-454 (634)
50 PRK08132 FAD-dependent oxidore 99.2 1.6E-09 3.6E-14 115.3 22.5 219 35-276 122-350 (547)
51 PRK06475 salicylate hydroxylas 99.2 7.3E-10 1.6E-14 113.1 18.4 206 34-256 103-327 (400)
52 PLN02985 squalene monooxygenas 99.2 6E-10 1.3E-14 118.6 18.0 297 32-380 141-460 (514)
53 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 2E-09 4.4E-14 110.0 19.6 240 36-293 101-354 (390)
54 TIGR03219 salicylate_mono sali 99.1 8.5E-09 1.8E-13 105.7 20.0 209 34-259 101-338 (414)
55 PRK06126 hypothetical protein; 99.0 2.8E-08 6.1E-13 105.7 21.8 220 33-276 121-354 (545)
56 PRK07236 hypothetical protein; 99.0 2.3E-08 5E-13 101.5 18.0 66 35-102 97-162 (386)
57 PF08491 SE: Squalene epoxidas 98.8 4.8E-07 1E-11 89.6 17.7 247 83-381 2-264 (276)
58 PLN02927 antheraxanthin epoxid 98.6 1.4E-06 3.1E-11 95.7 19.2 209 32-261 188-407 (668)
59 KOG2614 Kynurenine 3-monooxyge 98.2 8.3E-06 1.8E-10 84.4 11.7 209 35-261 99-328 (420)
60 PF01266 DAO: FAD dependent ox 98.2 3E-05 6.6E-10 75.6 15.1 65 33-98 142-207 (358)
61 PRK08255 salicylyl-CoA 5-hydro 98.2 8.6E-06 1.9E-10 90.9 12.7 198 34-258 93-306 (765)
62 TIGR02352 thiamin_ThiO glycine 98.1 0.00013 2.9E-09 71.5 16.7 63 34-97 133-196 (337)
63 KOG1298 Squalene monooxygenase 97.9 0.0003 6.4E-09 72.8 15.4 289 35-381 144-461 (509)
64 TIGR03197 MnmC_Cterm tRNA U-34 97.9 0.0006 1.3E-08 69.3 17.0 63 34-97 131-193 (381)
65 KOG2415 Electron transfer flav 97.9 0.00026 5.5E-09 73.9 13.8 241 34-292 179-455 (621)
66 PRK12266 glpD glycerol-3-phosp 97.8 0.0041 8.8E-08 66.4 21.6 201 35-259 152-375 (508)
67 PRK11259 solA N-methyltryptoph 97.7 0.0058 1.3E-07 61.3 20.3 61 34-95 145-205 (376)
68 PRK04176 ribulose-1,5-biphosph 97.6 0.00015 3.2E-09 71.0 7.9 72 33-104 99-183 (257)
69 TIGR00292 thiazole biosynthesi 97.6 0.00015 3.2E-09 71.0 7.9 70 34-103 96-179 (254)
70 TIGR01377 soxA_mon sarcosine o 97.6 0.013 2.8E-07 58.9 21.7 68 34-102 141-209 (380)
71 PRK13369 glycerol-3-phosphate 97.6 0.0083 1.8E-07 63.8 21.1 160 35-212 152-326 (502)
72 PRK12409 D-amino acid dehydrog 97.5 0.012 2.6E-07 60.2 19.7 66 35-100 194-265 (410)
73 KOG3855 Monooxygenase involved 97.4 0.0012 2.6E-08 68.8 11.6 72 30-101 142-224 (481)
74 PRK01747 mnmC bifunctional tRN 97.4 0.0061 1.3E-07 67.0 17.4 62 34-96 404-465 (662)
75 PF13738 Pyr_redox_3: Pyridine 97.2 0.0012 2.6E-08 60.3 8.0 60 34-93 78-137 (203)
76 TIGR01373 soxB sarcosine oxida 97.1 0.022 4.7E-07 58.3 16.6 69 34-103 179-250 (407)
77 PRK11728 hydroxyglutarate oxid 97.1 0.004 8.6E-08 63.6 10.9 82 34-117 145-227 (393)
78 PRK00711 D-amino acid dehydrog 97.0 0.066 1.4E-06 54.7 18.9 61 34-95 197-258 (416)
79 PF01946 Thi4: Thi4 family; PD 97.0 0.0036 7.7E-08 60.6 8.8 71 31-101 89-172 (230)
80 COG0579 Predicted dehydrogenas 96.8 0.0081 1.8E-07 63.3 10.1 82 34-115 149-232 (429)
81 COG1635 THI4 Ribulose 1,5-bisp 96.8 0.0047 1E-07 60.1 7.6 72 32-103 103-187 (262)
82 TIGR03377 glycerol3P_GlpA glyc 96.3 0.34 7.4E-06 51.7 19.3 66 34-99 124-195 (516)
83 PRK07233 hypothetical protein; 96.3 1 2.2E-05 45.8 21.6 55 38-92 198-252 (434)
84 TIGR01320 mal_quin_oxido malat 96.2 0.023 5E-07 60.6 9.4 84 34-117 174-265 (483)
85 PTZ00383 malate:quinone oxidor 96.1 0.029 6.3E-07 60.2 9.7 81 34-116 207-295 (497)
86 PRK12416 protoporphyrinogen ox 96.1 0.52 1.1E-05 49.2 18.9 58 39-100 227-284 (463)
87 PF01134 GIDA: Glucose inhibit 96.0 0.022 4.9E-07 59.4 8.0 61 32-92 89-150 (392)
88 PLN02612 phytoene desaturase 96.0 0.65 1.4E-05 50.6 19.5 60 38-99 308-369 (567)
89 PRK05257 malate:quinone oxidor 95.8 0.042 9.2E-07 58.8 9.3 69 34-102 179-255 (494)
90 TIGR03329 Phn_aa_oxid putative 95.7 0.029 6.2E-07 58.9 7.8 64 34-99 179-243 (460)
91 PLN02676 polyamine oxidase 95.7 0.63 1.4E-05 49.7 17.9 55 38-92 224-284 (487)
92 PF12831 FAD_oxidored: FAD dep 95.7 0.0029 6.3E-08 66.0 0.0 66 34-100 86-155 (428)
93 PRK05192 tRNA uridine 5-carbox 95.7 0.029 6.4E-07 61.7 7.7 60 34-94 96-157 (618)
94 TIGR00562 proto_IX_ox protopor 95.5 1.2 2.5E-05 46.3 18.4 40 53-92 238-277 (462)
95 COG0665 DadA Glycine/D-amino a 95.4 1.9 4E-05 43.3 19.1 64 34-98 152-216 (387)
96 KOG2844 Dimethylglycine dehydr 95.4 0.18 3.9E-06 55.8 12.2 203 35-266 184-405 (856)
97 TIGR00275 flavoprotein, HI0933 95.2 0.098 2.1E-06 54.2 9.2 67 36-103 103-180 (400)
98 PF03486 HI0933_like: HI0933-l 95.1 0.073 1.6E-06 55.8 8.2 59 36-94 107-166 (409)
99 COG2081 Predicted flavoprotein 94.9 0.099 2.1E-06 54.7 8.2 59 36-94 109-167 (408)
100 TIGR03467 HpnE squalene-associ 94.7 3.2 7E-05 41.8 18.6 52 40-91 199-251 (419)
101 PRK13339 malate:quinone oxidor 94.7 0.2 4.4E-06 53.8 10.2 83 35-117 181-272 (497)
102 PRK11101 glpA sn-glycerol-3-ph 94.6 0.078 1.7E-06 57.3 7.1 64 34-97 145-214 (546)
103 COG0578 GlpA Glycerol-3-phosph 94.5 2.3 5E-05 46.3 17.6 67 35-101 161-232 (532)
104 PLN02464 glycerol-3-phosphate 94.2 0.25 5.4E-06 54.5 10.0 65 35-99 229-301 (627)
105 TIGR03378 glycerol3P_GlpB glyc 94.1 0.16 3.5E-06 53.5 7.9 65 35-99 260-329 (419)
106 PRK15317 alkyl hydroperoxide r 94.1 0.27 5.9E-06 52.6 9.7 60 35-94 263-322 (517)
107 TIGR00136 gidA glucose-inhibit 93.8 0.19 4.1E-06 55.5 8.0 61 34-94 92-154 (617)
108 TIGR01292 TRX_reduct thioredox 93.4 0.35 7.6E-06 46.4 8.4 60 35-95 54-113 (300)
109 TIGR03364 HpnW_proposed FAD de 93.3 0.24 5.3E-06 49.7 7.2 57 34-95 141-198 (365)
110 PRK11883 protoporphyrinogen ox 93.1 12 0.00025 38.5 20.3 38 54-91 235-272 (451)
111 COG1231 Monoamine oxidase [Ami 92.7 11 0.00023 40.4 18.6 195 42-261 209-449 (450)
112 KOG2820 FAD-dependent oxidored 92.6 6.2 0.00014 41.0 16.0 59 35-93 150-211 (399)
113 TIGR03862 flavo_PP4765 unchara 92.5 0.59 1.3E-05 48.7 9.0 68 35-104 83-162 (376)
114 TIGR01813 flavo_cyto_c flavocy 92.1 0.54 1.2E-05 48.8 8.1 60 36-95 128-193 (439)
115 TIGR03140 AhpF alkyl hydropero 92.0 0.95 2.1E-05 48.5 10.1 60 35-94 264-323 (515)
116 PF13454 NAD_binding_9: FAD-NA 91.5 0.99 2.1E-05 40.5 8.2 78 16-93 68-156 (156)
117 PRK09897 hypothetical protein; 91.4 0.72 1.6E-05 50.1 8.4 52 44-95 113-167 (534)
118 PLN02661 Putative thiazole syn 91.1 0.51 1.1E-05 48.9 6.6 64 36-99 170-249 (357)
119 TIGR02734 crtI_fam phytoene de 91.0 0.76 1.6E-05 48.6 8.0 57 38-94 219-276 (502)
120 PRK07804 L-aspartate oxidase; 90.8 0.71 1.5E-05 49.9 7.6 59 38-96 144-212 (541)
121 COG2509 Uncharacterized FAD-de 90.8 0.74 1.6E-05 49.1 7.4 57 39-95 174-231 (486)
122 TIGR01812 sdhA_frdA_Gneg succi 90.4 0.83 1.8E-05 49.4 7.8 59 38-96 129-193 (566)
123 TIGR02485 CobZ_N-term precorri 90.3 1 2.2E-05 46.9 8.0 58 38-95 123-184 (432)
124 TIGR02730 carot_isom carotene 90.1 0.92 2E-05 48.1 7.7 60 38-97 229-289 (493)
125 PLN02172 flavin-containing mon 89.5 1.2 2.7E-05 47.3 8.0 60 35-94 108-173 (461)
126 PF00890 FAD_binding_2: FAD bi 89.4 1.6 3.5E-05 44.7 8.5 64 36-99 139-209 (417)
127 PRK04965 NADH:flavorubredoxin 89.3 1.3 2.9E-05 45.0 7.8 57 39-95 184-240 (377)
128 PRK06134 putative FAD-binding 88.9 1.8 3.9E-05 47.3 8.9 61 35-95 214-279 (581)
129 PTZ00363 rab-GDP dissociation 88.2 8.1 0.00018 41.1 13.0 56 40-95 234-291 (443)
130 COG0492 TrxB Thioredoxin reduc 88.1 2 4.4E-05 43.4 8.1 89 7-99 26-120 (305)
131 COG1233 Phytoene dehydrogenase 87.9 1.2 2.6E-05 47.5 6.7 55 38-92 224-279 (487)
132 PRK05945 sdhA succinate dehydr 87.9 2.4 5.2E-05 46.2 9.1 72 25-96 120-199 (575)
133 TIGR00551 nadB L-aspartate oxi 87.5 1.7 3.6E-05 46.3 7.5 68 29-96 117-191 (488)
134 PRK05249 soluble pyridine nucl 87.1 2.7 5.9E-05 43.9 8.7 63 33-96 212-274 (461)
135 PRK08274 tricarballylate dehyd 86.9 1.9 4.2E-05 45.1 7.5 59 37-95 130-193 (466)
136 PLN02976 amine oxidase 86.8 26 0.00056 43.0 17.0 36 54-89 947-992 (1713)
137 PRK06481 fumarate reductase fl 86.6 2.4 5.2E-05 45.4 8.1 58 38-95 190-252 (506)
138 PRK09231 fumarate reductase fl 86.5 2.9 6.2E-05 45.8 8.7 73 25-97 118-199 (582)
139 PRK09754 phenylpropionate diox 86.4 2.7 5.8E-05 43.2 8.0 58 37-95 185-242 (396)
140 PF01593 Amino_oxidase: Flavin 86.4 1.7 3.8E-05 42.7 6.5 51 43-93 214-264 (450)
141 PRK07121 hypothetical protein; 85.4 3.5 7.6E-05 43.8 8.5 60 36-95 175-240 (492)
142 PF00070 Pyr_redox: Pyridine n 85.3 3.1 6.8E-05 32.8 6.2 41 38-78 40-80 (80)
143 PLN02487 zeta-carotene desatur 85.2 65 0.0014 35.5 19.2 64 30-93 285-359 (569)
144 PRK06854 adenylylsulfate reduc 85.2 3.1 6.6E-05 45.8 8.2 61 35-95 129-196 (608)
145 TIGR02732 zeta_caro_desat caro 85.1 33 0.00071 36.5 15.7 55 39-93 220-283 (474)
146 PLN02576 protoporphyrinogen ox 85.0 53 0.0012 34.5 17.1 40 51-90 249-293 (496)
147 PRK06263 sdhA succinate dehydr 84.8 2.7 5.9E-05 45.3 7.5 59 38-96 134-199 (543)
148 PRK06175 L-aspartate oxidase; 84.6 3.2 6.9E-05 43.6 7.7 59 37-95 127-190 (433)
149 KOG0042 Glycerol-3-phosphate d 84.0 5 0.00011 44.0 8.8 206 37-267 223-454 (680)
150 PRK06069 sdhA succinate dehydr 83.4 3.5 7.6E-05 44.9 7.6 60 38-97 137-203 (577)
151 PRK08275 putative oxidoreducta 83.2 3.8 8.3E-05 44.4 7.8 59 38-96 137-202 (554)
152 PRK06116 glutathione reductase 83.1 4.9 0.00011 42.0 8.3 58 40-97 210-268 (450)
153 PLN02529 lysine-specific histo 83.0 60 0.0013 37.0 17.2 37 52-89 366-402 (738)
154 PRK12839 hypothetical protein; 82.8 5.2 0.00011 43.7 8.7 62 34-95 210-277 (572)
155 TIGR01176 fum_red_Fp fumarate 82.1 6.5 0.00014 43.1 9.1 72 25-96 117-197 (580)
156 PRK10262 thioredoxin reductase 82.0 9.8 0.00021 37.7 9.6 58 35-94 60-117 (321)
157 PRK08401 L-aspartate oxidase; 81.8 5.3 0.00011 42.3 8.1 60 37-98 119-179 (466)
158 PTZ00139 Succinate dehydrogena 81.8 5 0.00011 44.3 8.1 67 29-95 155-230 (617)
159 TIGR01350 lipoamide_DH dihydro 81.8 6.1 0.00013 41.2 8.5 59 39-97 212-272 (461)
160 PLN02328 lysine-specific histo 81.1 79 0.0017 36.5 17.4 36 54-90 448-483 (808)
161 PRK12843 putative FAD-binding 79.9 7 0.00015 42.7 8.4 61 36-96 219-284 (578)
162 TIGR01816 sdhA_forward succina 79.9 7.2 0.00016 42.5 8.5 68 29-96 108-183 (565)
163 PF13434 K_oxygenase: L-lysine 79.8 3.6 7.8E-05 42.1 5.8 60 35-94 92-159 (341)
164 PRK07057 sdhA succinate dehydr 78.9 6.7 0.00015 43.0 7.9 59 38-96 148-213 (591)
165 PLN02268 probable polyamine ox 78.9 3.7 8.1E-05 42.4 5.7 41 50-90 208-248 (435)
166 PRK08205 sdhA succinate dehydr 78.8 7.3 0.00016 42.6 8.2 59 38-96 140-208 (583)
167 PRK07573 sdhA succinate dehydr 78.8 6.7 0.00015 43.5 7.9 56 41-96 173-234 (640)
168 PRK08626 fumarate reductase fl 78.5 6.6 0.00014 43.8 7.8 71 26-96 144-222 (657)
169 PRK12842 putative succinate de 78.4 8.5 0.00018 41.9 8.5 57 38-94 214-275 (574)
170 PRK06416 dihydrolipoamide dehy 78.4 8.7 0.00019 40.2 8.3 58 39-96 214-274 (462)
171 TIGR01424 gluta_reduc_2 glutat 78.3 8.4 0.00018 40.3 8.2 61 35-96 205-265 (446)
172 PLN03000 amine oxidase 77.2 1.3E+02 0.0028 35.1 17.6 36 54-90 392-427 (881)
173 PRK05329 anaerobic glycerol-3- 77.2 9.7 0.00021 40.3 8.2 57 37-93 258-317 (422)
174 PRK09078 sdhA succinate dehydr 77.0 8.1 0.00018 42.4 7.9 67 29-95 138-213 (598)
175 TIGR03143 AhpF_homolog putativ 76.5 12 0.00025 40.7 8.9 58 35-94 57-114 (555)
176 PRK12844 3-ketosteroid-delta-1 76.3 12 0.00025 40.8 8.7 58 38-95 208-270 (557)
177 PF06039 Mqo: Malate:quinone o 76.2 5.9 0.00013 42.6 6.2 65 35-99 178-250 (488)
178 TIGR02731 phytoene_desat phyto 75.8 7.5 0.00016 40.5 6.9 55 38-92 213-274 (453)
179 TIGR02733 desat_CrtD C-3',4' d 75.6 9.1 0.0002 40.4 7.6 55 38-92 232-292 (492)
180 PRK07845 flavoprotein disulfid 75.4 13 0.00028 39.2 8.7 58 40-97 220-277 (466)
181 KOG4254 Phytoene desaturase [C 75.4 4.2 9E-05 43.7 4.8 50 41-90 267-317 (561)
182 PLN02507 glutathione reductase 74.5 13 0.00028 39.8 8.5 62 35-97 242-303 (499)
183 PRK06452 sdhA succinate dehydr 74.2 12 0.00027 40.7 8.3 59 38-96 136-200 (566)
184 TIGR01811 sdhA_Bsu succinate d 73.4 9.9 0.00022 41.9 7.4 57 39-95 130-197 (603)
185 PRK07512 L-aspartate oxidase; 73.3 7.7 0.00017 41.7 6.4 60 37-96 135-199 (513)
186 PRK05675 sdhA succinate dehydr 73.2 12 0.00026 40.9 7.9 67 30-96 116-191 (570)
187 TIGR02053 MerA mercuric reduct 73.1 15 0.00033 38.5 8.4 62 35-97 205-269 (463)
188 PLN00128 Succinate dehydrogena 72.9 11 0.00024 41.9 7.6 59 38-96 187-252 (635)
189 PLN02568 polyamine oxidase 72.7 11 0.00023 41.2 7.3 51 39-91 243-293 (539)
190 PRK08071 L-aspartate oxidase; 72.6 9.9 0.00021 40.9 7.0 58 37-95 129-191 (510)
191 PRK08958 sdhA succinate dehydr 72.0 12 0.00027 41.0 7.7 67 30-96 133-208 (588)
192 PRK12845 3-ketosteroid-delta-1 70.9 15 0.00032 40.2 8.0 58 39-96 218-280 (564)
193 PRK07843 3-ketosteroid-delta-1 69.4 20 0.00042 39.1 8.5 58 38-95 208-270 (557)
194 PRK09564 coenzyme A disulfide 69.1 17 0.00037 37.6 7.7 57 38-95 191-247 (444)
195 PRK07251 pyridine nucleotide-d 69.0 20 0.00044 37.2 8.2 57 39-96 199-255 (438)
196 COG3075 GlpB Anaerobic glycero 68.8 8.8 0.00019 39.9 5.2 55 39-93 259-316 (421)
197 TIGR01423 trypano_reduc trypan 66.9 23 0.0005 37.9 8.3 65 31-96 225-290 (486)
198 PRK14727 putative mercuric red 65.7 26 0.00056 37.1 8.4 61 35-97 226-286 (479)
199 PRK12835 3-ketosteroid-delta-1 65.6 23 0.0005 38.9 8.1 56 40-95 215-276 (584)
200 PRK07208 hypothetical protein; 65.2 21 0.00044 37.4 7.4 55 38-92 218-278 (479)
201 PRK08010 pyridine nucleotide-d 64.8 28 0.0006 36.3 8.2 57 39-96 200-256 (441)
202 TIGR01421 gluta_reduc_1 glutat 64.2 30 0.00065 36.4 8.4 66 31-97 201-268 (450)
203 PRK07818 dihydrolipoamide dehy 64.2 30 0.00064 36.4 8.4 61 35-96 211-275 (466)
204 PRK06327 dihydrolipoamide dehy 64.0 29 0.00062 36.7 8.3 60 38-97 224-287 (475)
205 PRK07845 flavoprotein disulfid 63.1 20 0.00044 37.8 6.9 52 42-94 96-151 (466)
206 PRK07803 sdhA succinate dehydr 62.8 26 0.00057 38.7 8.0 58 38-95 138-214 (626)
207 PRK06370 mercuric reductase; V 62.6 33 0.00072 36.0 8.4 58 39-96 213-273 (463)
208 PRK14694 putative mercuric red 61.7 35 0.00076 36.0 8.4 57 39-96 219-275 (468)
209 PRK09077 L-aspartate oxidase; 61.6 33 0.00071 37.1 8.3 72 26-97 124-210 (536)
210 PRK06115 dihydrolipoamide dehy 61.0 37 0.00079 35.9 8.4 60 35-95 213-277 (466)
211 PRK07846 mycothione reductase; 60.7 35 0.00075 36.0 8.2 62 34-97 204-265 (451)
212 PRK09564 coenzyme A disulfide 59.9 19 0.00041 37.3 5.9 57 39-95 57-116 (444)
213 TIGR03169 Nterm_to_SelD pyridi 59.4 18 0.00039 36.3 5.6 59 35-96 51-109 (364)
214 PF00743 FMO-like: Flavin-bind 59.3 43 0.00093 36.5 8.7 62 33-94 79-150 (531)
215 TIGR03452 mycothione_red mycot 58.2 44 0.00095 35.2 8.4 49 48-96 219-267 (452)
216 PTZ00318 NADH dehydrogenase-li 58.2 29 0.00063 36.1 7.0 52 39-94 229-280 (424)
217 PRK06912 acoL dihydrolipoamide 57.4 47 0.001 34.9 8.4 58 39-96 212-270 (458)
218 PRK12837 3-ketosteroid-delta-1 55.9 46 0.001 35.7 8.2 54 39-92 174-234 (513)
219 COG2072 TrkA Predicted flavopr 55.7 19 0.00041 38.1 5.2 55 40-94 84-144 (443)
220 PRK13748 putative mercuric red 55.6 48 0.001 35.6 8.3 56 40-96 312-367 (561)
221 TIGR03385 CoA_CoA_reduc CoA-di 55.4 42 0.0009 34.7 7.6 55 39-95 180-234 (427)
222 PF07992 Pyr_redox_2: Pyridine 55.0 17 0.00037 32.6 4.2 51 43-93 63-121 (201)
223 KOG1346 Programmed cell death 54.9 16 0.00034 39.2 4.3 59 35-93 390-448 (659)
224 COG0445 GidA Flavin-dependent 54.9 12 0.00026 41.2 3.5 60 34-93 96-157 (621)
225 PTZ00052 thioredoxin reductase 53.5 53 0.0012 35.2 8.2 61 35-96 220-280 (499)
226 TIGR03169 Nterm_to_SelD pyridi 53.2 37 0.0008 34.1 6.6 52 39-94 192-243 (364)
227 PTZ00306 NADH-dependent fumara 52.7 42 0.00092 40.0 7.9 56 40-95 546-621 (1167)
228 PF00732 GMC_oxred_N: GMC oxid 52.1 50 0.0011 32.0 7.1 62 36-97 191-262 (296)
229 PRK05976 dihydrolipoamide dehy 51.8 59 0.0013 34.3 8.1 57 40-96 223-283 (472)
230 PRK12834 putative FAD-binding 50.7 59 0.0013 35.2 8.1 58 39-96 149-229 (549)
231 TIGR03385 CoA_CoA_reduc CoA-di 50.4 32 0.00069 35.5 5.8 50 45-94 50-103 (427)
232 COG1252 Ndh NADH dehydrogenase 49.8 36 0.00077 36.1 6.0 66 30-100 202-269 (405)
233 TIGR02374 nitri_red_nirB nitri 47.5 57 0.0012 37.2 7.6 57 40-96 184-240 (785)
234 TIGR01810 betA choline dehydro 47.1 52 0.0011 35.3 7.0 60 40-100 196-262 (532)
235 KOG2665 Predicted FAD-dependen 44.7 44 0.00094 34.9 5.5 67 34-100 192-263 (453)
236 PLN02815 L-aspartate oxidase 43.6 71 0.0015 35.3 7.4 70 27-96 142-224 (594)
237 PF00996 GDI: GDP dissociation 43.5 2.8E+02 0.006 29.8 11.5 53 38-91 233-286 (438)
238 PRK04965 NADH:flavorubredoxin 42.8 78 0.0017 32.1 7.1 56 36-94 55-111 (377)
239 TIGR01438 TGR thioredoxin and 41.1 1.1E+02 0.0024 32.7 8.3 65 31-96 214-281 (484)
240 TIGR02061 aprA adenosine phosp 39.9 94 0.002 34.6 7.7 56 39-94 127-191 (614)
241 PRK05249 soluble pyridine nucl 39.4 95 0.0021 32.4 7.3 49 43-94 99-149 (461)
242 KOG0404 Thioredoxin reductase 37.8 68 0.0015 32.0 5.4 63 35-102 67-129 (322)
243 PLN02507 glutathione reductase 37.8 1E+02 0.0023 33.0 7.5 48 44-94 130-179 (499)
244 PRK08641 sdhA succinate dehydr 37.1 1.2E+02 0.0025 33.4 7.8 60 37-96 132-202 (589)
245 PTZ00318 NADH dehydrogenase-li 36.6 1.1E+02 0.0024 31.9 7.2 62 32-94 56-125 (424)
246 KOG2355 Predicted ABC-type tra 35.7 43 0.00093 33.1 3.6 51 22-72 159-219 (291)
247 PRK07395 L-aspartate oxidase; 34.9 70 0.0015 34.9 5.6 58 38-95 134-198 (553)
248 PRK14989 nitrite reductase sub 34.1 1.4E+02 0.003 34.6 8.1 55 42-96 191-247 (847)
249 PRK06467 dihydrolipoamide dehy 33.7 1.1E+02 0.0023 32.5 6.7 45 47-94 102-148 (471)
250 PRK13512 coenzyme A disulfide 33.5 83 0.0018 32.9 5.7 51 45-95 64-118 (438)
251 PRK09754 phenylpropionate diox 33.4 86 0.0019 32.1 5.8 45 48-94 68-112 (396)
252 TIGR01292 TRX_reduct thioredox 32.5 1.5E+02 0.0033 28.1 7.0 54 41-94 179-238 (300)
253 PRK13800 putative oxidoreducta 32.0 1.3E+02 0.0029 34.8 7.5 57 40-96 145-207 (897)
254 COG0029 NadB Aspartate oxidase 31.7 71 0.0015 34.9 4.9 75 25-99 118-201 (518)
255 KOG1399 Flavin-containing mono 31.6 1.6E+02 0.0034 31.6 7.5 60 35-94 87-153 (448)
256 TIGR02374 nitri_red_nirB nitri 31.4 70 0.0015 36.5 5.1 48 45-94 61-108 (785)
257 COG0446 HcaD Uncharacterized N 30.0 2E+02 0.0044 28.5 7.7 58 38-95 178-238 (415)
258 PRK06416 dihydrolipoamide dehy 29.7 1.7E+02 0.0036 30.7 7.3 48 44-94 98-146 (462)
259 PLN02546 glutathione reductase 29.6 1.8E+02 0.004 31.9 7.8 58 40-97 295-353 (558)
260 PRK13512 coenzyme A disulfide 29.1 1.7E+02 0.0037 30.5 7.3 52 40-95 191-242 (438)
261 PRK06467 dihydrolipoamide dehy 28.9 2.3E+02 0.0049 30.0 8.2 64 32-97 210-277 (471)
262 PTZ00058 glutathione reductase 28.9 2.3E+02 0.0049 31.2 8.3 64 31-95 272-337 (561)
263 PRK05976 dihydrolipoamide dehy 28.7 1.4E+02 0.0031 31.4 6.6 48 46-94 100-154 (472)
264 TIGR01424 gluta_reduc_2 glutat 28.6 1.7E+02 0.0037 30.6 7.1 51 40-94 92-142 (446)
265 PTZ00058 glutathione reductase 28.3 1.1E+02 0.0024 33.6 5.8 52 43-94 140-214 (561)
266 PRK14989 nitrite reductase sub 26.4 1E+02 0.0022 35.7 5.3 47 46-94 67-113 (847)
267 PRK13977 myosin-cross-reactive 26.2 1.8E+02 0.0038 32.4 6.9 56 38-93 226-292 (576)
268 PRK06116 glutathione reductase 26.0 1.8E+02 0.0039 30.3 6.7 45 44-94 99-143 (450)
269 PF13434 K_oxygenase: L-lysine 25.8 1.6E+02 0.0035 30.0 6.2 75 17-92 254-339 (341)
270 COG1249 Lpd Pyruvate/2-oxoglut 25.5 2.9E+02 0.0063 29.7 8.2 63 30-93 207-271 (454)
271 PRK06327 dihydrolipoamide dehy 24.1 1.8E+02 0.0039 30.8 6.3 47 47-94 109-157 (475)
272 TIGR01421 gluta_reduc_1 glutat 23.7 2.1E+02 0.0045 30.1 6.7 48 41-94 94-141 (450)
273 KOG2853 Possible oxidoreductas 23.7 4.3E+02 0.0092 28.2 8.6 68 35-103 240-330 (509)
274 PF05186 Dpy-30: Dpy-30 motif; 23.0 63 0.0014 23.3 1.8 35 322-369 3-37 (42)
275 PRK09897 hypothetical protein; 22.9 1.9E+02 0.004 31.8 6.3 51 47-98 400-451 (534)
276 COG3634 AhpF Alkyl hydroperoxi 22.7 1.2E+02 0.0027 32.1 4.6 59 35-93 263-324 (520)
277 PRK06292 dihydrolipoamide dehy 21.4 3.8E+02 0.0083 27.9 8.1 57 40-97 212-271 (460)
278 PRK06115 dihydrolipoamide dehy 20.4 3E+02 0.0066 29.0 7.1 44 48-94 103-148 (466)
No 1
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=2.9e-33 Score=291.28 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=221.0
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCC--CCceee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK--PDGVCL 111 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~--~~~vc~ 111 (417)
.|+|..|++.|.++|.+.|+++. .++|++++..++++.|++.+|++++|++||||+|++|++.+....... +..+..
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~~~g~Q~a~Gi 188 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPFNPGYQVAYGI 188 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCCCccceeeeeE
Confidence 48999999999999999998886 579999999999999999888899999999999999998753111100 001111
Q ss_pred eeeeeeecCCCCCcce-EEEecccccc--------cCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC--CCC-----C
Q 014843 112 VVGSCARGFKDNSTSD-VIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--GSP-----K 175 (417)
Q Consensus 112 ~vg~~a~G~~d~~~ge-i~fs~~~v~~--------~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~--~~p-----s 175 (417)
+++.....++ ... ++.++..... .+..-++|+| +||.+++ . .+ .|+++ .+| .
T Consensus 189 ~~ev~~~p~d---~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~---~-~~----vEeT~l~s~~~~~~~~ 256 (447)
T PLN02463 189 LAEVDSHPFD---LDKMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSN---R-IF----LEETSLVARPGLPMDD 256 (447)
T ss_pred EeecCCCCcc---cccchhhhcChhhccccchhhhccCCCCceEE-EEecCCC---e-EE----EEeeeeecCCCCCHHH
Confidence 1111111121 111 1111111110 0011257999 9999865 1 11 22221 111 4
Q ss_pred HHHHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHH
Q 014843 176 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 255 (417)
Q Consensus 176 L~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI 255 (417)
+++.+.+|++.+ |+... ++.+.+.|.||+.. +.+...+|+++||||||++||.|||||++++++++.+|+.|
T Consensus 257 lk~~L~~~l~~~----Gi~~~--~i~~~E~~~IPmg~--~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~ 328 (447)
T PLN02463 257 IQERMVARLRHL----GIKVK--SVEEDEKCVIPMGG--PLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAI 328 (447)
T ss_pred HHHHHHHHHHHC----CCCcc--eeeeeeeeEeeCCC--CCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHH
Confidence 444555555433 54333 46888999999954 55667899999999999999999999999999999999999
Q ss_pred HHHHhCCCC---ChhhHhh-----hcCCCc---cchHHHHHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhhccc
Q 014843 256 YEAVRGDFV---DSYSLSL-----LNPYMP---NLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPF 324 (417)
Q Consensus 256 ~~AL~~~~l---sa~~L~~-----l~~Yq~---nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~f 324 (417)
.+||+++.. +..+++. +-+|+. .--...++.++|.++.. .++.||.+||+||+++|.+|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~----------~~~~ff~~ff~l~~~~~~gf 398 (447)
T PLN02463 329 VEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLD----------GTRRFFDAFFDLEPHYWHGF 398 (447)
T ss_pred HHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChH----------HHHHHHHHHHcCCHHHcccc
Confidence 999997765 3333332 222221 11122489999999998 89999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCChHHHHhhcCchhhhhhhHHHH
Q 014843 325 LQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 369 (417)
Q Consensus 325 l~d~~~~~~l~~~m~~~~~~~P~~v~~~~~~~g~~~~~~w~~~~~ 369 (417)
|.++++..+|+.+|+++|...|+.+|+.+-..|+.+++.-+++++
T Consensus 399 l~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~ 443 (447)
T PLN02463 399 LSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLI 443 (447)
T ss_pred ccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhc
Confidence 999999999999999999999999999999999999999888765
No 2
>PLN02697 lycopene epsilon cyclase
Probab=99.97 E-value=3.7e-30 Score=272.95 Aligned_cols=306 Identities=14% Similarity=0.135 Sum_probs=209.6
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEE-EecCCcEEEEEEEEeccCCCch-hhhhhhcCCC-CCcee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSP-VVKQIRSGRK-PDGVC 110 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V-~t~~g~~~~ARlVIDA~G~~Sp-iarql~~g~~-~~~vc 110 (417)
.|+|..|++.|.++|.+.|+++ .+++|++++.+++++.+ .+.+|.+++|++||+|+|+.|. .+.....+.. .-..+
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a 266 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTA 266 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEE
Confidence 4999999999999999999988 67799999988887664 4556789999999999999993 3221111110 01111
Q ss_pred eeeeeeee--cCC-CCCcceEEEecccc-----cccCCCCCceeeeecCCCCCCCCceEEE-EEeeCCCCCCC--CHHHH
Q 014843 111 LVVGSCAR--GFK-DNSTSDVIYSSSSV-----KKVGDSEVQLFWEAFPAGSGPLDRTTYM-FTYIDPQAGSP--KLEEL 179 (417)
Q Consensus 111 ~~vg~~a~--G~~-d~~~gei~fs~~~v-----~~~~~~~~qy~We~FP~~dg~~e~ttyL-f~y~~~~~~~p--sL~~l 179 (417)
.|..++ ..+ +.+. .++.++... +......+.|+| +||.+++ ..++ +|+.-..+.-+ .+++-
T Consensus 267 --~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~l~~~~~l~~~~l~~~ 338 (529)
T PLN02697 267 --YGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETCLASKDAMPFDLLKKR 338 (529)
T ss_pred --EEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEeeeccCCCCCHHHHHHH
Confidence 111111 111 2222 234343211 001122467999 9999864 3333 33321111111 44444
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
+++|++. +|+. ..++.+.+.|.||+.+ +.+...+++++||||||++||.|||||++.++.++.+|+.|++||
T Consensus 339 L~~~l~~----~Gi~--~~~i~~~E~g~iPm~g--~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l 410 (529)
T PLN02697 339 LMSRLET----MGIR--ILKTYEEEWSYIPVGG--SLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARIL 410 (529)
T ss_pred HHHHHHh----CCCC--cceEEEEEeeeecCCC--CCcccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHh
Confidence 5555543 3553 3346889999999955 444458999999999999999999999999999999999999999
Q ss_pred hCCC---------CChhhHhhhcCCCccchH---------HHHHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhh
Q 014843 260 RGDF---------VDSYSLSLLNPYMPNLSA---------SWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVL 321 (417)
Q Consensus 260 ~~~~---------lsa~~L~~l~~Yq~nl~~---------~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~ 321 (417)
++++ .++.+++ .|+..+.. ..+++.+|.++++ .++.||+.||+||+++|
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~---~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~----------~~~~ff~~ff~L~~~~~ 477 (529)
T PLN02697 411 KNVSSGGKLGTSNSSNISMQ---AWNTLWPQERKRQRAFFLFGLALILQLDTE----------GIRTFFVTFFRLPKWMW 477 (529)
T ss_pred hCCccccccccccchHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHCCCHHHH
Confidence 9886 4455554 33222211 2357778888877 89999999999999999
Q ss_pred cccccccCChhHHHHHHHHHHHhCCCChHHHHhh--cCchhhhhhhHHHH
Q 014843 322 RPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFF 369 (417)
Q Consensus 322 ~~fl~d~~~~~~l~~~m~~~~~~~P~~v~~~~~~--~g~~~~~~w~~~~~ 369 (417)
++||.++++..+++.+|+++|...|+.+++.+-. .+-.....=++.|+
T Consensus 478 ~~Fl~~~l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 527 (529)
T PLN02697 478 QGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYL 527 (529)
T ss_pred hhHhhccCCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhh
Confidence 9999999999999999999999999999977643 33233344444444
No 3
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=1.7e-25 Score=225.45 Aligned_cols=291 Identities=18% Similarity=0.142 Sum_probs=194.2
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEE-CCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCC-CCceee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK-PDGVCL 111 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~-~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~-~~~vc~ 111 (417)
.+++..|+++|.+++.+.|++++ .+++++++.+ ++++.|++.+|++++|++||+|+|..|.+.+ ...+.. .-..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~-~~~~~~~~~q~~- 157 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQY-VRFPLNVGFQVA- 157 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhccc-ccCCCCceEEEE-
Confidence 49999999999999999988886 5578888877 6788888877889999999999999984422 221111 00111
Q ss_pred eeeeeee--cCC-CCCcceEEEeccccccc-C---CCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCC-CHHHHHHHH
Q 014843 112 VVGSCAR--GFK-DNSTSDVIYSSSSVKKV-G---DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP-KLEELLERY 183 (417)
Q Consensus 112 ~vg~~a~--G~~-d~~~gei~fs~~~v~~~-~---~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~p-sL~~l~e~y 183 (417)
.|..++ ... +.+ ..+++++...+.. . +..++|+| .||.+++ ...+.-..+.......+ .+++.+.+|
T Consensus 158 -~G~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~--~~~v~~~~~~~~~~~~~~~~~~~l~~~ 232 (388)
T TIGR01790 158 -YGVEARLSRPPHGPS-SMVIMDARVDQLAAPELKGYRPTFLY-AMPLGST--RVFIEETSLADRPALPRDRLRQRILAR 232 (388)
T ss_pred -EEEEEEEcCCCCCCC-ceEEEeccccccccccccCCCCceEE-EeecCCC--eEEEEeccccCCCCCCHHHHHHHHHHH
Confidence 111111 111 212 2345554322110 0 01134999 9999864 22222111111010111 455666666
Q ss_pred HHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCC
Q 014843 184 WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF 263 (417)
Q Consensus 184 ~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~ 263 (417)
++.+ +.... ++.+.+.|.+|+.... +.+.+|++++||||++++|+||+||..+++++..+|+.|.+|++.+
T Consensus 233 ~~~~----g~~~~--~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~- 303 (388)
T TIGR01790 233 LNAQ----GWQIK--TIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS- 303 (388)
T ss_pred HHHc----CCeee--EEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-
Confidence 6544 33222 3467778999996532 3478999999999999999999999999999999999999999877
Q ss_pred CChhhHhhhcCCCc-----cchHHHHHHhh-cccccCCCCChhHHHHHHHHHHHHHhhcChhhhcccccccCChhHHHHH
Q 014843 264 VDSYSLSLLNPYMP-----NLSASWLFQRA-MSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKT 337 (417)
Q Consensus 264 lsa~~L~~l~~Yq~-----nl~~~~~lqk~-M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~fl~d~~~~~~l~~~ 337 (417)
++..++.+..+.. .+...|.-..+ +..++. .++.+|..||++|++.+..||.++.++.+++++
T Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~ 372 (388)
T TIGR01790 304 -SELATAAWDGLWPTERRRQRYFRLLGRMLFLALEPE----------ERRRFFQRFFGLPEELWERFLAARLSLPDLLRV 372 (388)
T ss_pred -HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHCCCHHHHhhhhcCCCCHHHHHHH
Confidence 3444543332221 22233332222 233332 788899999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHH
Q 014843 338 LGLVMLNKPQIIPSI 352 (417)
Q Consensus 338 m~~~~~~~P~~v~~~ 352 (417)
|+++|.+-|..+++.
T Consensus 373 ~~~~~~~~~~~~~~~ 387 (388)
T TIGR01790 373 LLRMFGQPPNPVRSA 387 (388)
T ss_pred HHHHhCcCChhhhhc
Confidence 999999999988764
No 4
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.94 E-value=1e-24 Score=222.69 Aligned_cols=244 Identities=21% Similarity=0.265 Sum_probs=179.1
Q ss_pred ceeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC-CcEEEEEEEEeccCCCchhhhhhhcC-CCCC
Q 014843 30 SILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVKQIRSG-RKPD 107 (417)
Q Consensus 30 ~~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~-g~~~~ARlVIDA~G~~Spiarql~~g-~~~~ 107 (417)
.....|+|.+||++|.++|.++|++++.+++++++..+++++++.+.. +.+++||+||+|+|.+|.++++++.. .+++
T Consensus 87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~ 166 (396)
T COG0644 87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPE 166 (396)
T ss_pred CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChh
Confidence 457779999999999999999999999999999999999998877653 36899999999999999999998777 2233
Q ss_pred ceeeeeeeeeecCC-CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHHHHHHHHh
Q 014843 108 GVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDL 186 (417)
Q Consensus 108 ~vc~~vg~~a~G~~-d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l~e~y~~~ 186 (417)
.++..+... ..++ +.+..+.++...... ..+|.| +||.+++ ..++|++.+.+.....|.+ +++++|...
T Consensus 167 ~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~--~~~VG~g~~~~~~~~~~~~-~~l~~f~~~ 236 (396)
T COG0644 167 DYAIGVKEV-IEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDG--HANVGIGVLLDDPSLSPFL-ELLERFKEH 236 (396)
T ss_pred heeEEeEEE-EecCCCCceEEEEecCCccC-----CCceEE-EEECCCc--eEEEEEEEecCCcCCCchH-HHHHHHHhC
Confidence 222211111 1332 223334333333344 379999 9999976 4999999776541222344 888888875
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCCh
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDS 266 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~lsa 266 (417)
.+ .+... ...+..+...|.+|.++....++..++++++||||++++|+||+||..++.++.-+|+.|.+|++.+ +
T Consensus 237 ~~-~~~~~-~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~---~ 311 (396)
T COG0644 237 PA-IRKLL-LGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG---E 311 (396)
T ss_pred cc-cchhc-cCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC---h
Confidence 43 22211 1134566777899998743333889999999999999999999999999999888999999999988 5
Q ss_pred hhHhhhcCCCccchHHHHHHhhccc
Q 014843 267 YSLSLLNPYMPNLSASWLFQRAMSA 291 (417)
Q Consensus 267 ~~L~~l~~Yq~nl~~~~~lqk~M~~ 291 (417)
++|+ .|+..+..++.....+..
T Consensus 312 ~~l~---~Y~~~~~~~~~~~~~~~~ 333 (396)
T COG0644 312 EALA---EYERLLRKSLAREDLKSL 333 (396)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHh
Confidence 5554 377766666664443333
No 5
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.92 E-value=2.6e-23 Score=216.84 Aligned_cols=248 Identities=17% Similarity=0.159 Sum_probs=170.1
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEEC---CeEEEEecC-------C--cEEEEEEEEeccCCCchhhhhh
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAE-------G--KILSSHLIIDAMGNFSPVVKQI 100 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~---d~v~V~t~~-------g--~~~~ARlVIDA~G~~Spiarql 100 (417)
.+|+|..||++|.++|.++|++++.+ .++++.... ++++|++.+ | .+++||+||+|||.+|.+++++
T Consensus 127 ~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 127 GMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred EEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHh
Confidence 35999999999999999999999865 587876532 456665422 3 4899999999999999999998
Q ss_pred hcCCCCCceeeeeeeeeecCC-----CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCC
Q 014843 101 RSGRKPDGVCLVVGSCARGFK-----DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 175 (417)
Q Consensus 101 ~~g~~~~~vc~~vg~~a~G~~-----d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~ps 175 (417)
+.+.. ..+..+......-. +.+..++++.+. +.+ ++|.| +||+++. .++++++... +++
T Consensus 206 g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~---~~VG~g~~~~----~~~ 269 (450)
T PLN00093 206 DAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH---VAVGTGTVVN----KPA 269 (450)
T ss_pred CCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc---EEEEEEEccC----CCC
Confidence 76532 23333332221111 122345555543 333 57999 9999954 6788876432 124
Q ss_pred HHHHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHH
Q 014843 176 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 255 (417)
Q Consensus 176 L~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI 255 (417)
++++.+.+.+.+++ .+.+.++.+...+.+|.+. ..+...+|++++||||++++|+||+||..+++++..+|+.|
T Consensus 270 ~~~~~~~l~~~~~~----~l~~~~~~~~~~~~ip~~~--~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i 343 (450)
T PLN00093 270 IKKYQRATRNRAKD----KIAGGKIIRVEAHPIPEHP--RPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 343 (450)
T ss_pred hHHHHHHHHHHhhh----hcCCCeEEEEEEEEccccc--ccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHH
Confidence 55554444333321 1222334566668889832 33566889999999999999999999999999988899999
Q ss_pred HHHHhCC--CCChhhHhhhc-----CCCccchHHHHHHhhcccccCCCCChhHHHHHHHHHHHHH
Q 014843 256 YEAVRGD--FVDSYSLSLLN-----PYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCM 313 (417)
Q Consensus 256 ~~AL~~~--~lsa~~L~~l~-----~Yq~nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~ 313 (417)
.++++.+ +.+.+.|+.+. .|.++++.+..+++++.-+.. .++.|+..+
T Consensus 344 ~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~----------~~~~~~~~~ 398 (450)
T PLN00093 344 VEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNP----------AREAFVEMC 398 (450)
T ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH----------HHHHHHHHh
Confidence 9999876 45666775421 455788888889999876222 555666655
No 6
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.91 E-value=5.1e-23 Score=210.69 Aligned_cols=250 Identities=17% Similarity=0.152 Sum_probs=171.4
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEE---ECCeEEEEe--cC-----C--cEEEEEEEEeccCCCchhhhhh
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLL--AE-----G--KILSSHLIIDAMGNFSPVVKQI 100 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~---~~d~v~V~t--~~-----g--~~~~ARlVIDA~G~~Spiarql 100 (417)
.+|+|..||++|.++|.++|++++.++ +++++. .++.+.|+. .+ | .+++||+||+|||.+|.+++++
T Consensus 88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 469999999999999999999998885 777753 234555542 21 3 3799999999999999999998
Q ss_pred hcCCCCCceeeeeeeeeec----CC-CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCC
Q 014843 101 RSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 175 (417)
Q Consensus 101 ~~g~~~~~vc~~vg~~a~G----~~-d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~ps 175 (417)
+... ...+..+..+.+- .+ +.+..++++.. .+.+ .+|.| +||+++. .+++++... ..++
T Consensus 167 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~p-----~gY~W-ifP~~~~---~~VG~g~~~----~~~~ 230 (398)
T TIGR02028 167 DAGD--YSYAIAFQERIRLPDEKMAYYDDLAEMYVGD-DVSP-----DFYGW-VFPKCDH---VAVGTGTVA----AKPE 230 (398)
T ss_pred CCCC--cceEEEEEEEeeCChhhcccCCCeEEEEeCC-CCCC-----CceEE-EEECCCe---EEEEEEeCC----CCcc
Confidence 6542 2334333333221 10 11234444443 3443 57999 9999954 678887532 1224
Q ss_pred HHHHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHH
Q 014843 176 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 255 (417)
Q Consensus 176 L~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI 255 (417)
++++.+.+....+ .+ +.+.++.+...+.+|.+. ..+...+|++++||||+++||+||+||..+++++..+|+.|
T Consensus 231 ~~~~~~~l~~~~~-~~---~~~~~~~~~~~~~ip~~~--~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i 304 (398)
T TIGR02028 231 IKRLQSGIRARAA-GK---VAGGRIIRVEAHPIPEHP--RPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 304 (398)
T ss_pred HHHHHHhhhhhhh-hc---cCCCcEEEEEEEeccccc--cccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHH
Confidence 5554443322211 00 112233455557888842 33566899999999999999999999999999988899999
Q ss_pred HHHHhCCC--CChhhHhhhc-----CCCccchHHHHHHhhcccccCCCCChhHHHHHHHHHHHHHhh
Q 014843 256 YEAVRGDF--VDSYSLSLLN-----PYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQK 315 (417)
Q Consensus 256 ~~AL~~~~--lsa~~L~~l~-----~Yq~nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~ 315 (417)
.+|++.++ .++++|+.+. .|.++++.+..+++++.- .+ +.++.++..+.+
T Consensus 305 ~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~ 361 (398)
T TIGR02028 305 VEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR-SN---------AGREAFVEMCAD 361 (398)
T ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc---------HHHHHHHHHhcC
Confidence 99998876 5677776422 566788899999999986 33 377788877744
No 7
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.91 E-value=4.5e-23 Score=209.46 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=182.2
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCCceeeee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVV 113 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~~vc~~v 113 (417)
.||+..|+++|.+++. .+++++.+++|++|+..++++.|.+.+|++++||+||||+|..++..+.... ....++ .+
T Consensus 83 ~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~-Q~f~G~--~v 158 (374)
T PF05834_consen 83 MIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGL-QHFYGW--EV 158 (374)
T ss_pred EEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccccccccccc-ceeEEE--EE
Confidence 5999999999999999 6678999999999999999999999889999999999999988774432211 112221 22
Q ss_pred eeeeecCCCCCcceEEEecccccccCC-CCCceeeeecCCCCCCCCceEEEE--EeeCCCC-CCC-CHHHHHHHHHHhCC
Q 014843 114 GSCARGFKDNSTSDVIYSSSSVKKVGD-SEVQLFWEAFPAGSGPLDRTTYMF--TYIDPQA-GSP-KLEELLERYWDLMP 188 (417)
Q Consensus 114 g~~a~G~~d~~~gei~fs~~~v~~~~~-~~~qy~We~FP~~dg~~e~ttyLf--~y~~~~~-~~p-sL~~l~e~y~~~LP 188 (417)
++-..-+ +.+... +.++. +.. . .++.|+| ++|-+++ ..|. |+-..++ ... .+++-+.+|++.
T Consensus 159 ~~~~~~f-~~~~~~-lMD~r-~~~--~~~~~~F~Y-~lP~~~~-----~alvE~T~fs~~~~~~~~~~~~~l~~~l~~-- 225 (374)
T PF05834_consen 159 ETDEPVF-DPDTAT-LMDFR-VPQ--SADGPSFLY-VLPFSED-----RALVEETSFSPRPALPEEELKARLRRYLER-- 225 (374)
T ss_pred eccCCCC-CCCceE-EEEec-ccC--CCCCceEEE-EEEcCCC-----eEEEEEEEEcCCCCCCHHHHHHHHHHHHHH--
Confidence 2111112 212222 12332 221 1 3578999 9999854 2222 1111122 111 455555555554
Q ss_pred cccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCChhh
Q 014843 189 EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS 268 (417)
Q Consensus 189 ~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~lsa~~ 268 (417)
.|++ ..++.+.|.|.|||....+.+..+++++.+|+|||+++|.|||+|.++.|.+. .|+++|+++..+...
T Consensus 226 --~g~~--~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~----~ia~~l~~~~~~~~~ 297 (374)
T PF05834_consen 226 --LGID--DYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQAD----AIADALAKGGAPLRA 297 (374)
T ss_pred --cCCC--ceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHH----HHHHHHhhccccccc
Confidence 3554 45678999999999543455677888999999999999999999999999755 455555543222221
Q ss_pred HhhhcCCCcc--chHHH-----HHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhhcccccccCChhHHHHHHHHH
Q 014843 269 LSLLNPYMPN--LSASW-----LFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLV 341 (417)
Q Consensus 269 L~~l~~Yq~n--l~~~~-----~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~fl~d~~~~~~l~~~m~~~ 341 (417)
. .++.+. ....+ +++-++..++. ....||+.|++||++.+..||.++.++.+.+++|+.+
T Consensus 298 ~---~~~~~~~~~~~~~flr~l~~~~l~~~~~~----------~~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~~~~ 364 (374)
T PF05834_consen 298 W---SPLWPRERWRDRRFLRVLGLEVLLRLPPD----------GRRIFFRMFFRLPPDRIARFLSERSSLADDLRIMLAL 364 (374)
T ss_pred c---ccccHHHHHHHHHHHHHhcchhhcccChh----------HHHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHHHhC
Confidence 1 111110 00111 13344556665 7899999999999999999999999999999999876
Q ss_pred HHh
Q 014843 342 MLN 344 (417)
Q Consensus 342 ~~~ 344 (417)
+..
T Consensus 365 p~~ 367 (374)
T PF05834_consen 365 PKR 367 (374)
T ss_pred CCc
Confidence 544
No 8
>PRK10015 oxidoreductase; Provisional
Probab=99.90 E-value=1e-22 Score=210.71 Aligned_cols=267 Identities=14% Similarity=0.109 Sum_probs=178.7
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC--CCCce
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR--KPDGV 109 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~--~~~~v 109 (417)
...|+|..||++|.++|.+.|++++.+++|+++..+++++++...++.+++|++||+|+|.+|.++++++... ++.++
T Consensus 102 ~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~ 181 (429)
T PRK10015 102 SYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHY 181 (429)
T ss_pred ceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeE
Confidence 4568999999999999999999999999999999887777633334568999999999999999999876543 23333
Q ss_pred eeeeeeeeecCCCC----------CcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC-CCCCHHH
Q 014843 110 CLVVGSCARGFKDN----------STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA-GSPKLEE 178 (417)
Q Consensus 110 c~~vg~~a~G~~d~----------~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~-~~psL~~ 178 (417)
+..+.... +++.. ..|...+..+.... .-.++.| .||..|. .++|++.+..... ...++.+
T Consensus 182 ~~gvk~~~-~~~~~~i~~~~~~~~~~g~~w~~~g~~~~---g~~g~G~-~~~~~d~---v~vGv~~~~~~~~~~~~~~~~ 253 (429)
T PRK10015 182 AVGVKEVI-GLTPEQINDRFNITGEEGAAWLFAGSPSD---GLMGGGF-LYTNKDS---ISLGLVCGLGDIAHAQKSVPQ 253 (429)
T ss_pred EEEEEEEE-eCCHHHhhHhhcCCCCCCeEEEecCccCC---CCCCceE-EEEcCCc---EEEEEEEehhhhccCCCCHHH
Confidence 33333222 22210 11333333332221 1134667 6777654 8888876543211 2237888
Q ss_pred HHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCC-CCCCCCCCEEEEcCCCCCCCC--ccccchhHHHhhHHHHHHHH
Q 014843 179 LLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSP--VSFGGFGSLTRHLGRLSTGV 255 (417)
Q Consensus 179 l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~-p~~~~~driLlvGDAAglvdP--lSg~GfGs~lR~l~rla~gI 255 (417)
++++|. ..|..+.. ++..+..+...+.+|.++.. ..+++.+|+|++||||+++|| +|+.||..+++++..+|+.|
T Consensus 254 ~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i 331 (429)
T PRK10015 254 MLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTV 331 (429)
T ss_pred HHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHH
Confidence 888884 44443332 23334455556788976421 226789999999999999995 69999999999988899999
Q ss_pred HHHHhCCCCChhhHhhhcCCCccchHH---------HHHHhhcccccCCCCChhHHHHHHHHHHH
Q 014843 256 YEAVRGDFVDSYSLSLLNPYMPNLSAS---------WLFQRAMSAKQQSDVSPDFINELLYVNFQ 311 (417)
Q Consensus 256 ~~AL~~~~lsa~~L~~l~~Yq~nl~~~---------~~lqk~M~~~~~~~~~p~~in~ll~~~F~ 311 (417)
.+|++.+++|++.| +.|+..+.-+ ..++++|.-+.-.+.-|+.+|+.++.+|.
T Consensus 332 ~~a~~~~d~s~~~l---~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (429)
T PRK10015 332 IAAKERADFSASSL---AQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFT 393 (429)
T ss_pred HHHHhcCCCccccH---HHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhcc
Confidence 99999999999988 4555544433 33445554332223346666666666665
No 9
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.90 E-value=5.2e-22 Score=201.53 Aligned_cols=232 Identities=17% Similarity=0.161 Sum_probs=159.3
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC------C--cEEEEEEEEeccCCCchhhhhhhcCC
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDAMGNFSPVVKQIRSGR 104 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~------g--~~~~ARlVIDA~G~~Spiarql~~g~ 104 (417)
.+++|..|+++|.++|.+.|++++.. +|+++..+++++.|++.+ | .+++||+||+|||..|.++++++...
T Consensus 87 ~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~ 165 (388)
T TIGR02023 87 GMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPK 165 (388)
T ss_pred EeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCC
Confidence 35999999999999999999999865 699999999988887542 2 37999999999999999999987653
Q ss_pred CCCceeeeeeeeeecC----C-CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHH
Q 014843 105 KPDGVCLVVGSCARGF----K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL 179 (417)
Q Consensus 105 ~~~~vc~~vg~~a~G~----~-d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l 179 (417)
+.. .+..+......- . +.+..++++.. ++.+ .+|.| .||.++. .++++++.. + ..+.+++
T Consensus 166 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~y~w-v~P~~~~---~~vg~~~~~--~--~~~~~~~ 230 (388)
T TIGR02023 166 NLP-RVIAYQERIKLPDDKMAYYEELADVYYGG-EVSP-----DFYGW-VFPKGDH---IAVGTGTGT--H--GFDAKQL 230 (388)
T ss_pred CCc-EEEEEEEEecCCchhcccCCCeEEEEECC-CcCC-----CceEE-EeeCCCe---eEEeEEECC--C--CCCHHHH
Confidence 222 222233332110 0 12234444443 3333 47999 9999853 677776532 1 1256677
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
.+.+.+.++ + +..+..+.+.+.+|+.. .+ +...+|++++||||++++|+||+||..+++++..+|+.|.+++
T Consensus 231 ~~~l~~~~~----~--~~~~~~~~~~~~ip~~~-~~-~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 231 QANLRRRAG----L--DGGQTIRREAAPIPMKP-RP-RWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred HHHHHHhhC----C--CCceEeeeeeEeccccc-cc-cccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 776666543 1 12223445557888832 23 4567899999999999999999999999999999999999999
Q ss_pred hCCCCChhhHhhh-----cCCCccchHHHHHHhhcc
Q 014843 260 RGDFVDSYSLSLL-----NPYMPNLSASWLFQRAMS 290 (417)
Q Consensus 260 ~~~~lsa~~L~~l-----~~Yq~nl~~~~~lqk~M~ 290 (417)
++++ +++|+.+ +.|.+.+..+..++++..
T Consensus 303 ~~~~--~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~ 336 (388)
T TIGR02023 303 QNGD--ATDLRHYERKFMKLYGTTFRVLRVLQMVYY 336 (388)
T ss_pred hcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8763 4555421 134444444444555553
No 10
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.87 E-value=4.3e-21 Score=198.36 Aligned_cols=268 Identities=13% Similarity=0.113 Sum_probs=170.8
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC--CCCc
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR--KPDG 108 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~--~~~~ 108 (417)
....|+|.+||++|.++|.+.|++++++++|++++.+++.+++.+.+|.+++|++||+|+|.+|.++++++... ++..
T Consensus 101 ~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~ 180 (428)
T PRK10157 101 RSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTD 180 (428)
T ss_pred CceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCCCcE
Confidence 34568999999999999999999999999999999888776544446778999999999999999999976542 3343
Q ss_pred eeeeeeeeeec----------CCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC-CCCCCCHH
Q 014843 109 VCLVVGSCARG----------FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QAGSPKLE 177 (417)
Q Consensus 109 vc~~vg~~a~G----------~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~-~~~~psL~ 177 (417)
++..+....+. +++ ..|.+.+..+...+ + .-|+.| .||..+. .++++.+..+. ...+.+..
T Consensus 181 ~av~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~--g-~~ggG~-~~~~~~~---~svG~~~~~~~~~~~~~~~~ 252 (428)
T PRK10157 181 VAVGVKELIELPKSVIEDRFQLQG-NQGAACLFAGSPTD--G-LMGGGF-LYTNENT---LSLGLVCGLHHLHDAKKSVP 252 (428)
T ss_pred EEEEEEEEEEcCHHHHHHhhccCC-CCCeEEEEEECCCC--C-CcCcee-EEEcCCe---EEEEEEEehHHhcccCCCHH
Confidence 43322222111 011 11222222221111 1 234567 7887653 77777654331 11223677
Q ss_pred HHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCC-CCCCCCCCCEEEEcCCCCCCCC--ccccchhHHHhhHHHHHHH
Q 014843 178 ELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP--VSFGGFGSLTRHLGRLSTG 254 (417)
Q Consensus 178 ~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~-~p~~~~~driLlvGDAAglvdP--lSg~GfGs~lR~l~rla~g 254 (417)
++++++ ...|..+.. ++..+......+.+|..+. ...+...++++++||||+++|| +|+.||..+++++..+|+.
T Consensus 253 ~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAea 330 (428)
T PRK10157 253 QMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKT 330 (428)
T ss_pred HHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHH
Confidence 777765 445432211 1111222222345675431 1226778999999999999998 5999999999998889999
Q ss_pred HHHHHhCCCCChhhHhhhcCCCccchHHH--------HHHhhcccccCCCCChhHHHHHHHHHHH
Q 014843 255 VYEAVRGDFVDSYSLSLLNPYMPNLSASW--------LFQRAMSAKQQSDVSPDFINELLYVNFQ 311 (417)
Q Consensus 255 I~~AL~~~~lsa~~L~~l~~Yq~nl~~~~--------~lqk~M~~~~~~~~~p~~in~ll~~~F~ 311 (417)
|.+|++.++.+++.|+ .|+..+..++ .+.++|..+.=-+.-|+.+|+.+..+|.
T Consensus 331 i~~a~~~~~~s~~~l~---~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (428)
T PRK10157 331 VLSAMKSDDFSKQKLA---EYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFT 392 (428)
T ss_pred HHHHHhcCCcchhhHH---HHHHHHHHhHHHHHHHHhccHHHhcCccHHHHHHHHHHHHHHHhee
Confidence 9999999999998884 5555554443 1333344321112235556666555554
No 11
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.81 E-value=2.6e-18 Score=164.28 Aligned_cols=207 Identities=18% Similarity=0.210 Sum_probs=150.0
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC-CcEEEEEEEEeccCCCchhhhhhhcCCCCCce
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVKQIRSGRKPDGV 109 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~-g~~~~ARlVIDA~G~~Spiarql~~g~~~~~v 109 (417)
-...++|.+|.+.|.+++.+.|++++.+++++++..+++++.|...+ +.+++|++||+|+|..|++.++++....+...
T Consensus 84 ~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~ 163 (295)
T TIGR02032 84 LAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPREL 163 (295)
T ss_pred cEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcce
Confidence 34569999999999999999999999999999999999988876543 46899999999999999999988655434444
Q ss_pred eeeeeeeeecC--C-CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHHHHHHHHh
Q 014843 110 CLVVGSCARGF--K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDL 186 (417)
Q Consensus 110 c~~vg~~a~G~--~-d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l~e~y~~~ 186 (417)
+.....+...- . +.+...+++.+.. . .++|.| .||.+++ ..++++....+. ..+++++.++++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~-~~P~~~~--~~~v~~~~~~~~--~~~~~~~~~~~~~~~ 232 (295)
T TIGR02032 164 GVAARAEVEMPDEEVDEDFVEVYIDRGI-S-----PGGYGW-VFPKGDG--TANVGVGSRSAE--EGEDLKKYLKDFLAR 232 (295)
T ss_pred eeEEEEEEecCCcccCcceEEEEcCCCc-C-----CCceEE-EEeCCCC--eEEEeeeeccCC--CCCCHHHHHHHHHHh
Confidence 43333332211 1 1122333333322 2 258999 8999865 355655433221 234899999999988
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHH
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 254 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~g 254 (417)
.|. +++.++.+...+.+|...+ ..+...+|++++||||+.+||++|.|+..+++++.-+|+.
T Consensus 233 ~~~-----l~~~~~~~~~~~~~~~~~~-~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 233 RPE-----LKDAETVEVIGAPIPIGRP-DDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEV 294 (295)
T ss_pred Ccc-----cccCcEEeeeceeeccCCC-CCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhh
Confidence 874 3344456666678888653 4467889999999999999999999999999986656554
No 12
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.79 E-value=3.8e-18 Score=173.71 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=159.2
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCCceeee
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 112 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~~vc~~ 112 (417)
.++++..|.++|.+++.. + ++.+++|+++ ++++|++ .+|++++|++||||+|+.|+-... .
T Consensus 84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~------------~ 144 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLK------------G 144 (370)
T ss_pred eEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCcccc------------c
Confidence 568899999999987743 3 7779999987 6677666 478899999999999999763332 1
Q ss_pred eeeeeecCCCCCcceEEEecccccccCCCCCceeeeecC--CCCCCCCceEEEEEee--------CCCC--CCC--CHHH
Q 014843 113 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFP--AGSGPLDRTTYMFTYI--------DPQA--GSP--KLEE 178 (417)
Q Consensus 113 vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP--~~dg~~e~ttyLf~y~--------~~~~--~~p--sL~~ 178 (417)
.-|++.|+. .+ ++ .|..+ ....-|+|= .++ -++|+|++. |.|. .+| +.++
T Consensus 145 ~~Q~f~G~~----~r--~~-~p~~~-----~~~~lMD~~~~q~~----g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~ 208 (370)
T TIGR01789 145 GFQVFLGRE----MR--LQ-EPHGL-----ENPIIMDATVDQLA----GYRFVYVLPLGSHDLLIEDTYYADDPLLDRNA 208 (370)
T ss_pred eeeEEEEEE----EE--Ec-CCCCC-----CccEEEeeeccCCC----CceEEEECcCCCCeEEEEEEeccCCCCCCHHH
Confidence 224555542 11 22 12222 344445552 121 233444222 3222 212 4444
Q ss_pred H---HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCC---CCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHH
Q 014843 179 L---LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLP---AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 252 (417)
Q Consensus 179 l---~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~---~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla 252 (417)
+ +++|.+.. ++. .-++.+.+.|.||+-...+.+ ...++++++||||++++|.||+||..+++. |
T Consensus 209 l~~~l~~~~~~~----g~~--~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~----a 278 (370)
T TIGR01789 209 LSQRIDQYARAN----GWQ--NGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVEN----A 278 (370)
T ss_pred HHHHHHHHHHHh----CCC--ceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHH----H
Confidence 4 55554322 443 334678888999982211111 225669999999999999999999999987 5
Q ss_pred HHHHHHHh-CC-CCChhhHhhhcCCCcc-----chHHHHHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhhcccc
Q 014843 253 TGVYEAVR-GD-FVDSYSLSLLNPYMPN-----LSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFL 325 (417)
Q Consensus 253 ~gI~~AL~-~~-~lsa~~L~~l~~Yq~n-----l~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~fl 325 (417)
+.|+++++ ++ .+.+ ++ ..|... =...|+...+|..... +.-..||..||+||++.+..||
T Consensus 279 ~~la~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~f~~~f~l~~~~~~rFl 345 (370)
T TIGR01789 279 DALAAQPDLSSEQLAA-FI---DSRARRHWSKTGYYRLLNRMLFFAAKP---------EKRVRVFQRFYGLREGLIERFY 345 (370)
T ss_pred HHHHhccCcCccchhh-hh---hHHHHHHHHHhHHHHHHHHHHhccCCc---------hhHHHHHHHHhCCCHHHHHHHH
Confidence 55555554 33 2221 11 222222 2455577777755544 2459999999999999999999
Q ss_pred cccCChhHHHHHHH
Q 014843 326 QDVIKFGPLAKTLG 339 (417)
Q Consensus 326 ~d~~~~~~l~~~m~ 339 (417)
.++.++.+.+++|.
T Consensus 346 ~~~~~~~~~~~i~~ 359 (370)
T TIGR01789 346 AARSNTFDKLRVLW 359 (370)
T ss_pred hcCCCHHHHHHHHc
Confidence 99999999999885
No 13
>PRK11445 putative oxidoreductase; Provisional
Probab=99.78 E-value=2e-17 Score=166.27 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=127.4
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEe-cCCc--EEEEEEEEeccCCCchhhhhhhcCCCC-Cce
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFSPVVKQIRSGRKP-DGV 109 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t-~~g~--~~~ARlVIDA~G~~Spiarql~~g~~~-~~v 109 (417)
.+||..|+++|.+. .+.|++++.++++++++.+++++.|+. .+|+ +++|++||+|||.+|.+.+++....+. ..+
T Consensus 95 ~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~~ 173 (351)
T PRK11445 95 NIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKYV 173 (351)
T ss_pred cccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhEE
Confidence 49999999999984 577899999999999999999998875 4554 799999999999999999988654322 222
Q ss_pred eeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHHHH---HHHHh
Q 014843 110 CLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLE---RYWDL 186 (417)
Q Consensus 110 c~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l~e---~y~~~ 186 (417)
+ +.+....-...+.-.++|+.. . ..+|.| .||+++. .+.+ +++.. . +.++.++ +++++
T Consensus 174 ~--~~~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~---~~~g-~~~~~---~--~~~~~~~~l~~~l~~ 234 (351)
T PRK11445 174 A--IQQWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY---FIFG-GAYPM---K--DGRERFETLKEKLSA 234 (351)
T ss_pred E--EEEEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc---EEec-ccccc---c--chHHHHHHHHHHHHh
Confidence 1 222211111112222334432 2 248999 8999753 3332 33321 1 1223333 33333
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCC-CCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~-~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
+ +....+ ..+.+.+.++...+.+. ....+|++++||||+.+||+||+||..+++++..+++.|.+++
T Consensus 235 ~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 235 F----GFQFGK--PVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred c----cccccc--ccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 3 111112 12222244433211121 2346899999999999999999999999999888888887655
No 14
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.68 E-value=2e-15 Score=150.71 Aligned_cols=219 Identities=15% Similarity=0.091 Sum_probs=141.9
Q ss_pred eeccChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC---C
Q 014843 32 LEFREPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP---D 107 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~---~ 107 (417)
...++|..|++.|.+++.+.| ++++.+++|++++..++++.|++.+|+++++++||+|||..|.+.++++...+. .
T Consensus 100 ~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~ 179 (385)
T TIGR01988 100 GYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYG 179 (385)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccC
Confidence 345899999999999999988 899999999999999999999888888999999999999999999987643211 1
Q ss_pred ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHHH
Q 014843 108 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERYW 184 (417)
Q Consensus 108 ~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y~ 184 (417)
..|.+... ..+.. ..+..... +. ..+++| .||..++ ..+++.. ..+... ...+.+++.+++.
T Consensus 180 ~~~~~~~~---~~~~~-~~~~~~~~--~~-----~~g~~~-~~p~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 244 (385)
T TIGR01988 180 QSAVVANV---KHERP-HQGTAWER--FT-----PTGPLA-LLPLPDN--RSSLVWT-LPPEEAERLLALSDEEFLAELQ 244 (385)
T ss_pred CeEEEEEE---EecCC-CCCEEEEE--ec-----CCCCEE-EeECCCC--CeEEEEE-CCHHHHHHHHcCCHHHHHHHHH
Confidence 12222111 11111 11111111 11 146777 7998865 2344333 221110 1113445555554
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC-C
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD-F 263 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~-~ 263 (417)
+.++..-. ++... .....+|.+.....+...+||+++||||..++|++|.|+..+++.+.-|++.|..+++.+ +
T Consensus 245 ~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~ 319 (385)
T TIGR01988 245 RAFGSRLG----AITLV-GERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGED 319 (385)
T ss_pred HHHhhhcC----ceEec-cCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44432211 11111 112445654322335677999999999999999999999999999999999999888654 2
Q ss_pred C-ChhhHh
Q 014843 264 V-DSYSLS 270 (417)
Q Consensus 264 l-sa~~L~ 270 (417)
. .++.|+
T Consensus 320 ~~~~~~l~ 327 (385)
T TIGR01988 320 IGSPRVLQ 327 (385)
T ss_pred CCcHHHHH
Confidence 3 244553
No 15
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.63 E-value=2e-14 Score=145.38 Aligned_cols=223 Identities=18% Similarity=0.136 Sum_probs=138.8
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC---C
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP---D 107 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~---~ 107 (417)
....|++..|++.|.+++.+.|++++.++++++++.+++++.|++.+|++++|++||+|||..|.+.++++..... .
T Consensus 104 ~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~ 183 (403)
T PRK07333 104 FAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYG 183 (403)
T ss_pred cEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCC
Confidence 3456899999999999999999999999999999999999999887888999999999999999998887544211 1
Q ss_pred ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCC---CCCHHHHHHHHH
Q 014843 108 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---SPKLEELLERYW 184 (417)
Q Consensus 108 ~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~---~psL~~l~e~y~ 184 (417)
..|.++... .+..........+. ..+++| .+|.+++ .....+........ ..+-+...+++.
T Consensus 184 ~~~~~~~~~---~~~~~~~~~~~~~~--------~~g~~~-~~Pl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (403)
T PRK07333 184 QSGIVCTVE---HERPHGGRAEEHFL--------PAGPFA-ILPLKGN---RSSLVWTERTADAERLVALDDLVFEAELE 248 (403)
T ss_pred CEEEEEEEE---cCCCCCCEEEEEeC--------CCCceE-EeECCCC---CeEEEEECCHHHHHHHHCCCHHHHHHHHH
Confidence 222221111 11101111111111 147778 7999876 33233321110000 011222223333
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCC-
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF- 263 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~- 263 (417)
+.++.. +..+..... ...+|.......+...+|++++||||...+|++|.|+..+++.+.-|++.|..+++.+.
T Consensus 249 ~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~ 323 (403)
T PRK07333 249 QRFGHR----LGELKVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLD 323 (403)
T ss_pred HHhhhh----cCceEeccC-ccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCC
Confidence 322111 111111100 02244422122345679999999999999999999999999999999999999887542
Q ss_pred -CChhhHhhhcCCC
Q 014843 264 -VDSYSLSLLNPYM 276 (417)
Q Consensus 264 -lsa~~L~~l~~Yq 276 (417)
-+++.| +.|+
T Consensus 324 ~~~~~~L---~~Ye 334 (403)
T PRK07333 324 IGSLDVL---ERYQ 334 (403)
T ss_pred CCCHHHH---HHHH
Confidence 244555 5555
No 16
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.62 E-value=2e-14 Score=144.71 Aligned_cols=222 Identities=17% Similarity=0.099 Sum_probs=134.7
Q ss_pred eccChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC---Cc
Q 014843 33 EFREPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP---DG 108 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~---~~ 108 (417)
..+++..|++.|.+++.+.| ++++ ++++++++.+++++.|++.+|.+++|++||+|+|..|.+.++++...+. .+
T Consensus 106 ~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~ 184 (388)
T PRK07608 106 WIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQ 184 (388)
T ss_pred EEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCC
Confidence 45889999999999999987 7888 9999999999999999987788899999999999999988877544221 12
Q ss_pred eeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHHHH
Q 014843 109 VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERYWD 185 (417)
Q Consensus 109 vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y~~ 185 (417)
.|.++.. + .+.......+..+ . ..+++| .+|..++ ....+ ++...... ...+.+++.+.+..
T Consensus 185 ~~~~~~~--~-~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (388)
T PRK07608 185 TGVVANF--K-AERPHRGTAYQWF---R-----DDGILA-LLPLPDG--HVSMV-WSARTAHADELLALSPEALAARVER 249 (388)
T ss_pred EEEEEEE--E-ecCCCCCEEEEEe---c-----CCCCEE-EeECCCC--CeEEE-EECCHHHHHHHHCCCHHHHHHHHHH
Confidence 2221111 1 1111111111111 1 246777 7898865 22222 22221111 11133333333332
Q ss_pred hCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCC
Q 014843 186 LMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVD 265 (417)
Q Consensus 186 ~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~ls 265 (417)
..+.. +..+...... ..+|.......+...+|++++||||...+|++|.|+..+++.+..||+.|..+...++..
T Consensus 250 ~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~ 324 (388)
T PRK07608 250 ASGGR----LGRLECVTPA-AGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLG 324 (388)
T ss_pred HHHHh----cCCceecCCc-ceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCc
Confidence 22210 1122111122 124443222234567899999999999999999999999999988988887664332332
Q ss_pred hhhHhhhcCCCc
Q 014843 266 SYSLSLLNPYMP 277 (417)
Q Consensus 266 a~~L~~l~~Yq~ 277 (417)
.. +.++.|+.
T Consensus 325 ~~--~~l~~Ye~ 334 (388)
T PRK07608 325 DL--RLLRRYER 334 (388)
T ss_pred cH--HHHHHHHH
Confidence 21 23466665
No 17
>PRK09126 hypothetical protein; Provisional
Probab=99.62 E-value=1.4e-14 Score=146.09 Aligned_cols=220 Identities=16% Similarity=0.106 Sum_probs=135.4
Q ss_pred eeeccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCC--
Q 014843 31 ILEFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD-- 107 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~-- 107 (417)
....+.+..|++.|.+++.+ .|++|..+++|++++.+++++.|++.+|++++|++||+|||..|.+.++++...+..
T Consensus 103 ~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~ 182 (392)
T PRK09126 103 LGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDF 182 (392)
T ss_pred ceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCcccccc
Confidence 44457888899999998865 789999999999999998999998878889999999999999999999875443221
Q ss_pred -ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHH
Q 014843 108 -GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERY 183 (417)
Q Consensus 108 -~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y 183 (417)
..|. +..+.....+ ....+..++ .++++| .||..++ ..+.++ .+..... ...+.+++.+++
T Consensus 183 ~~~~~-~~~~~~~~~~--~~~~~~~~~--------~~~~~~-~~P~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 247 (392)
T PRK09126 183 GRTML-VCRMRHELPH--HHTAWEWFG--------YGQTLA-LLPLNGH--LSSLVL-TLPPDQIEALLALDPEAFAAEV 247 (392)
T ss_pred CCeEE-EEEEeccCCC--CCEEEEEec--------CCCCeE-EeECCCC--CEEEEE-ECCHHHHHHHHcCCHHHHHHHH
Confidence 1121 1111111111 111111121 146788 7998865 244333 2322110 011233333333
Q ss_pred HHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC-
Q 014843 184 WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD- 262 (417)
Q Consensus 184 ~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~- 262 (417)
.+.++.. +......... ...|.+.....+...+|++++||||...+|++|.|+..+++.+..+++.|..+++.+
T Consensus 248 ~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~ 322 (392)
T PRK09126 248 TARFKGR----LGAMRLVSSR-HAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQ 322 (392)
T ss_pred HHHHhhh----ccCeEEcCCC-cEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3333211 1111111000 122332111224567999999999999999999999999999999999999988643
Q ss_pred CC-ChhhHh
Q 014843 263 FV-DSYSLS 270 (417)
Q Consensus 263 ~l-sa~~L~ 270 (417)
+. +++.|+
T Consensus 323 ~~~~~~~l~ 331 (392)
T PRK09126 323 DIGAASLLE 331 (392)
T ss_pred CCccHHHHH
Confidence 33 345553
No 18
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.61 E-value=6.8e-15 Score=143.28 Aligned_cols=232 Identities=20% Similarity=0.201 Sum_probs=135.6
Q ss_pred cceeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC---C--cEEEEEEEEeccCCCchhhhhhhcC
Q 014843 29 FSILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPVVKQIRSG 103 (417)
Q Consensus 29 ~~~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~---g--~~~~ARlVIDA~G~~Spiarql~~g 103 (417)
..-...++|..|++.|.+.+.+.|+.++.++++++++.+++++.+...+ | ++++|++||+|||.+|.+.++++..
T Consensus 102 ~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~ 181 (356)
T PF01494_consen 102 GPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGID 181 (356)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGG
T ss_pred CCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhcccc
Confidence 3444568999999999999999999999999999999999998766532 3 3799999999999999999998655
Q ss_pred CCCCc-e--eeeeeeeee-cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC-CCCCHHH
Q 014843 104 RKPDG-V--CLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA-GSPKLEE 178 (417)
Q Consensus 104 ~~~~~-v--c~~vg~~a~-G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~-~~psL~~ 178 (417)
.+... . +........ ++++.. .+..+-..+ ..+.+| .+|..++ ....+.+......+ .....+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~-~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~ 250 (356)
T PF01494_consen 182 RPGPDTVYRWGWFGIVFDSDLSDPW-EDHCFIYSP-------PSGGFA-IIPLENG--DRSRFVWFLPFDESKEERPEEF 250 (356)
T ss_dssp EEEEEEEEEEEEEEEEEECHSHTTT-SCEEEEEEE-------TTEEEE-EEEETTT--TEEEEEEEEETTTTTCCSTHCH
T ss_pred ccCcccccccccccccccccccccc-ccccccccc-------ccccee-EeeccCC--ccceEEEeeecccccccccccc
Confidence 22111 1 111111111 222211 111111111 235556 7898863 23333333332111 1112222
Q ss_pred HHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHH
Q 014843 179 LLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA 258 (417)
Q Consensus 179 l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~A 258 (417)
..+++++.+++.-+...-...+... -.+|.......+...+||+++||||..++|++|-|+..++..+..|++.|..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~ 328 (356)
T PF01494_consen 251 SPEELFANLPEIFGPDLLETEIDEI--SAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAA 328 (356)
T ss_dssp HHHHHHHHHHHHHHTCHHHHEEEEE--EEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc--cccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHH
Confidence 3333333322221111111111211 12232111112455689999999999999999999999999999999999988
Q ss_pred HhCCCCChhhHhhhcCCCc
Q 014843 259 VRGDFVDSYSLSLLNPYMP 277 (417)
Q Consensus 259 L~~~~lsa~~L~~l~~Yq~ 277 (417)
++ +.-.++.| +.|+.
T Consensus 329 ~~-g~~~~~~l---~~Y~~ 343 (356)
T PF01494_consen 329 LK-GEASEEAL---KAYEQ 343 (356)
T ss_dssp HT-TSSHHHHH---HHHHH
T ss_pred hc-CCcHHHHH---HHHHH
Confidence 86 34344444 56654
No 19
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.61 E-value=8.6e-15 Score=153.21 Aligned_cols=266 Identities=15% Similarity=0.176 Sum_probs=154.2
Q ss_pred cccceeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE--EEecCCcEEEEEEEEeccCCCchhhhhh-hcC
Q 014843 27 KTFSILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAEGKILSSHLIIDAMGNFSPVVKQI-RSG 103 (417)
Q Consensus 27 ~~~~~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~--V~t~~g~~~~ARlVIDA~G~~Spiarql-~~g 103 (417)
...+-...|||.+|+++|+++|++.|+++.+++ |+++..++++.+ |++.+|++++|++||||+|..|+++++. +.+
T Consensus 143 ~~~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~ 221 (454)
T PF04820_consen 143 SPFNYAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVG 221 (454)
T ss_dssp BTSS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EE
T ss_pred CCCCeeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCC
Confidence 345556679999999999999999999999885 889989888754 6677888999999999999999999983 333
Q ss_pred C-CCCceeeeeeeeee---cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHH
Q 014843 104 R-KPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL 179 (417)
Q Consensus 104 ~-~~~~vc~~vg~~a~---G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l 179 (417)
. ......+.-.+.+. ..+..+.-.. ....+ .|++| .+|..++ ...|+ .|....- +-++-
T Consensus 222 ~~~~~~~L~~d~av~~~~~~~~~~~~~T~---~~a~~------~GW~W-~IPL~~~---~~~G~-V~s~~~~---s~~~A 284 (454)
T PF04820_consen 222 FRDWSDWLPNDRAVAVQVPNEDPPEPYTR---STAFE------AGWIW-YIPLQNR---RGSGY-VYSSDFI---SDDEA 284 (454)
T ss_dssp EEEETTTCEEEEEEEEEEE-SSCTTSSEE---EEEES------SEEEE-EEEESSE---EEEEE-EEETTTS---HHHHH
T ss_pred CccccccccccEEEEEecCcCCCCCCcee---EEecC------CceEE-EccCCCc---ceEEE-EeccccC---CHHHH
Confidence 1 11111111112221 1111111111 11222 59999 7999864 44332 3443221 33455
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
++++.+.++.-.... . ...+ +...+ -.+...+|.+++||||+.+||++..||.-++. .++.|.++|
T Consensus 285 ~~~l~~~l~~~~~~~--~-~~i~-----~~~g~--~~~~~~~n~vavGdAAgFiDPL~StGI~la~~----aa~~l~~~l 350 (454)
T PF04820_consen 285 EAELLAYLGGSPEAE--P-RHIR-----FRSGR--RKQFWGKNCVAVGDAAGFIDPLESTGIHLALS----AAEALAEAL 350 (454)
T ss_dssp HHHHHHHHTCHCTTS--C-EEEE------S-EE--ESSSEETTEEE-CCCTEE--GGGSHHHHHHHH----HHHHHHHTH
T ss_pred HHHHHHhcchhhhcc--h-hhhc-----ccccc--hhhcccCCEEEEcchhhccCccccccHHHHHH----HHHHHHHhc
Confidence 555555443221111 1 1121 21111 22566799999999999999999999998888 467777888
Q ss_pred hCCCCChhhHhhhcCCCccchHHHHHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhhcccccccCChhHHHHHHH
Q 014843 260 RGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLG 339 (417)
Q Consensus 260 ~~~~lsa~~L~~l~~Yq~nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~fl~d~~~~~~l~~~m~ 339 (417)
..+..++..+ +.|+..+...| +.+-+.+..++..-..-..+.|+..= .+..++=.+-.+
T Consensus 351 ~~~~~~~~~~---~~Yn~~~~~~~----------------~~~~~fi~~hY~~~~r~ds~FW~~~~--~~~~~~~l~~~l 409 (454)
T PF04820_consen 351 PDDDFSPAAL---DRYNRRMRREY----------------ERIRDFISLHYQLSRRRDSPFWRARR--SMSIPDSLAEKL 409 (454)
T ss_dssp HCTTCCHHHH---HHHHHHHHHHH----------------HHHHHHHHHHHHTHHS-SSHHHHHHC--CSGCHHHHHHHH
T ss_pred ccCCCCHHHH---HHHHHHHHHHH----------------HHHHHHHHHHHccccCCCCHHHHhcc--ccCCCHHHHHHH
Confidence 8887776554 45555222222 33445666666654554446666554 445554444455
Q ss_pred HHHHhC
Q 014843 340 LVMLNK 345 (417)
Q Consensus 340 ~~~~~~ 345 (417)
..+...
T Consensus 410 ~~~~~~ 415 (454)
T PF04820_consen 410 DLWQAR 415 (454)
T ss_dssp HHHHCT
T ss_pred HHHHhc
Confidence 665555
No 20
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.57 E-value=1.7e-13 Score=138.49 Aligned_cols=209 Identities=17% Similarity=0.129 Sum_probs=134.1
Q ss_pred eeccChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC---C
Q 014843 32 LEFREPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP---D 107 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~---~ 107 (417)
...++|..|++.|.+++.+. |++++.++++++++.+++++.|++.+|++++|++||+|||..|++.++++.+... .
T Consensus 106 g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~ 185 (391)
T PRK08020 106 GYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYR 185 (391)
T ss_pred EEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCC
Confidence 45689999999999999875 8999999999999999999999887788999999999999999999987654211 1
Q ss_pred ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC----CCCCHHHHHHHH
Q 014843 108 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSPKLEELLERY 183 (417)
Q Consensus 108 ~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~----~~psL~~l~e~y 183 (417)
..|.++....+. .........+.+ .+.+. .+|..++ . ..+..+..... ...+.+++.+++
T Consensus 186 ~~~~~~~~~~~~---~~~~~~~~~~~~--------~g~~~-~~p~~~~---~-~~~v~~~~~~~~~~~~~~~~~~~~~~l 249 (391)
T PRK08020 186 QSCMLISVKCEN---PPGDSTWQQFTP--------SGPRA-FLPLFDN---W-ASLVWYDSPARIRQLQAMSMAQLQQEI 249 (391)
T ss_pred ceEEEEEEEecC---CCCCEEEEEEcC--------CCCEE-EeECCCC---c-EEEEEECCHHHHHHHHCCCHHHHHHHH
Confidence 223222211111 111111111111 12223 3565533 1 22222221100 011344554444
Q ss_pred HHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC
Q 014843 184 WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 262 (417)
Q Consensus 184 ~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~ 262 (417)
.+.+|+.-+ .+ .....+.+|.+.....+...+|++++||||..++|+.|.|+..+++.+..|++.+.++.+.+
T Consensus 250 ~~~~~~~~~----~~--~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~ 322 (391)
T PRK08020 250 AAHFPARLG----AV--TPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYG 322 (391)
T ss_pred HHHhhhhcc----ce--EeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcC
Confidence 444442211 11 11122566775433335677999999999999999999999999999999999998887654
No 21
>PRK06185 hypothetical protein; Provisional
Probab=99.57 E-value=2.2e-13 Score=138.37 Aligned_cols=225 Identities=14% Similarity=0.069 Sum_probs=141.4
Q ss_pred eeeccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE-E--EecCCc-EEEEEEEEeccCCCchhhhhhhcCCC
Q 014843 31 ILEFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-L--LLAEGK-ILSSHLIIDAMGNFSPVVKQIRSGRK 105 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~-V--~t~~g~-~~~ARlVIDA~G~~Spiarql~~g~~ 105 (417)
....+.+..|.+.|.+++.+ .|++++.++++++++.++++++ | ++.+|+ +++|++||+|||..|.+.++++...+
T Consensus 101 ~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~ 180 (407)
T PRK06185 101 YIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVR 180 (407)
T ss_pred cEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCcc
Confidence 44558899999999999977 5889999999999999888763 3 333554 79999999999999999888755421
Q ss_pred ---CCceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCC---CCCHHHH
Q 014843 106 ---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---SPKLEEL 179 (417)
Q Consensus 106 ---~~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~---~psL~~l 179 (417)
..+.+..+.. .. +..........+ . ..++++ .+|.+ + ...++... ...... ..+.+++
T Consensus 181 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~---~-----~~g~~~-llP~~-~--~~~i~~~~-~~~~~~~~~~~~~~~~ 244 (407)
T PRK06185 181 EFGAPMDVLWFRL--PR-EPDDPESLMGRF---G-----PGQGLI-MIDRG-D--YWQCGYVI-PKGGYAALRAAGLEAF 244 (407)
T ss_pred ccCCCceeEEEec--CC-CCCCCcccceEe---c-----CCcEEE-EEcCC-C--eEEEEEEe-cCCCchhhhhhhHHHH
Confidence 1122211111 11 000001111111 1 257778 68886 3 24444332 222111 1155666
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
.+++.+..|..+.. +..++.... ...+|.....-.+...+|++++||||..+||++|-|+..+++.+..|++.|.+++
T Consensus 245 ~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~ 322 (407)
T PRK06185 245 RERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPL 322 (407)
T ss_pred HHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 66665556654321 111111111 1234443222335667999999999999999999999999999999999999999
Q ss_pred hCCCCChhhHhhhcCCC
Q 014843 260 RGDFVDSYSLSLLNPYM 276 (417)
Q Consensus 260 ~~~~lsa~~L~~l~~Yq 276 (417)
+.++.+++.| +.|+
T Consensus 323 ~~~~~~~~~L---~~Y~ 336 (407)
T PRK06185 323 RRGRVSDRDL---AAVQ 336 (407)
T ss_pred ccCCccHHHH---HHHH
Confidence 8876655545 4555
No 22
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.57 E-value=5.3e-13 Score=135.76 Aligned_cols=240 Identities=16% Similarity=0.169 Sum_probs=140.0
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEE-ECCeEEEEe-cCCc--EEEEEEEEeccCCCchhhhhhhcCCCCC--c
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLL-AEGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPD--G 108 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~-~~d~v~V~t-~~g~--~~~ARlVIDA~G~~Spiarql~~g~~~~--~ 108 (417)
+.+..|++.|.+++.+.|++++.++++++++. +++++.|+. .+|+ +++|++||+|||.+|.+.+++....... +
T Consensus 100 ~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~ 179 (392)
T PRK08243 100 YGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFER 179 (392)
T ss_pred eCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceec
Confidence 45778889999999899999999999999986 677777765 3553 7999999999999999999875432111 1
Q ss_pred eeee--eeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHHHHHHHHh
Q 014843 109 VCLV--VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDL 186 (417)
Q Consensus 109 vc~~--vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l~e~y~~~ 186 (417)
.++. .+..+ ..+ ....++++.. . ++++.| .+|.+++ ....++...........+.++..+.+.+.
T Consensus 180 ~~~~~~~~~~~-~~~-~~~~~~~~~~---~-----~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (392)
T PRK08243 180 VYPFGWLGILA-EAP-PVSDELIYAN---H-----ERGFAL-CSMRSPT--RSRYYLQCPLDDKVEDWSDERFWDELRRR 246 (392)
T ss_pred ccCceEEEEeC-CCC-CCCCceEEee---C-----CCceEE-EecCCCC--cEEEEEEecCCCCcccCChhHHHHHHHHh
Confidence 1110 00000 000 0112222221 1 357777 6665533 23333322111111111344555556555
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCCh
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDS 266 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~lsa 266 (417)
++...+..+....+... ...|.....-.+.+.+|++++||||..++|++|.|+..+++.+.-||+.|..+++.+ .+
T Consensus 247 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~--~~ 322 (392)
T PRK08243 247 LPPEDAERLVTGPSIEK--SIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG--DT 322 (392)
T ss_pred cCcccccccccCccccc--cceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC--CH
Confidence 54321111111011100 112221111124556899999999999999999999999999999999999888754 24
Q ss_pred hhHhhhcCCCc--------cchHHHHHHhhcccccC
Q 014843 267 YSLSLLNPYMP--------NLSASWLFQRAMSAKQQ 294 (417)
Q Consensus 267 ~~L~~l~~Yq~--------nl~~~~~lqk~M~~~~~ 294 (417)
+.| +.|+. ....++.+.+.|...++
T Consensus 323 ~~L---~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~ 355 (392)
T PRK08243 323 ALL---DAYSATALRRVWKAERFSWWMTSMLHRFPD 355 (392)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 444 44543 33444455555555443
No 23
>PRK08013 oxidoreductase; Provisional
Probab=99.57 E-value=1.2e-13 Score=140.97 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=139.0
Q ss_pred eeeccChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC---
Q 014843 31 ILEFREPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP--- 106 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~--- 106 (417)
+...++|..|++.|.+++.+. |++++.++++++++.+++++.|+..+|++++|++||+|||.+|.+.++++.....
T Consensus 104 ~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~ 183 (400)
T PRK08013 104 LGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDY 183 (400)
T ss_pred cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCcccccc
Confidence 445699999999999999884 7899999999999999999999887888999999999999999999998654321
Q ss_pred CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCC---CCCHHHHHHHH
Q 014843 107 DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---SPKLEELLERY 183 (417)
Q Consensus 107 ~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~---~psL~~l~e~y 183 (417)
...|.+.. + .. +....+..+..+. +.++++ .+|..++ . .....+........ ..+.+++.+.+
T Consensus 184 ~~~~~~~~-v-~~-~~~~~~~~~~~~~--------~~g~~~-~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 249 (400)
T PRK08013 184 QHHALVAT-I-RT-EEPHDAVARQVFH--------GDGILA-FLPLSDP-H-LCSIVWSLSPEEAQRMQQAPEEEFNRAL 249 (400)
T ss_pred CcEEEEEE-E-ec-cCCCCCEEEEEEc--------CCCCEE-EEECCCC-C-eEEEEEEcCHHHHHHHHcCCHHHHHHHH
Confidence 23333221 1 11 1111111111111 235666 6787654 1 11222222211100 11222333333
Q ss_pred HHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCC
Q 014843 184 WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF 263 (417)
Q Consensus 184 ~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~ 263 (417)
...++. .+...++.... ..+|.+.....+...+|++++||||-..+|+.|-|+..+++.+.-|++.|..++..+.
T Consensus 250 ~~~~~~----~l~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~ 324 (400)
T PRK08013 250 AIAFDN----RLGLCELESER-QVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGK 324 (400)
T ss_pred HHHHhH----hhCceEecCCc-cEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCC
Confidence 222221 01111121111 1233332222355679999999999999999999999999999999999988876653
Q ss_pred -CChhhHhhhcCCCc
Q 014843 264 -VDSYSLSLLNPYMP 277 (417)
Q Consensus 264 -lsa~~L~~l~~Yq~ 277 (417)
.+...+ ++.|+.
T Consensus 325 ~~~~~~~--L~~Y~~ 337 (400)
T PRK08013 325 DIGQHLY--LRRYER 337 (400)
T ss_pred CcccHHH--HHHHHH
Confidence 333222 466664
No 24
>PRK07045 putative monooxygenase; Reviewed
Probab=99.56 E-value=2.6e-13 Score=137.35 Aligned_cols=212 Identities=14% Similarity=0.162 Sum_probs=129.1
Q ss_pred ccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeE--EEEecCCcEEEEEEEEeccCCCchhhhhh-hcCC--C-C
Q 014843 34 FREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGR--K-P 106 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v--~V~t~~g~~~~ARlVIDA~G~~Spiarql-~~g~--~-~ 106 (417)
.+.|..|.+.|.+++.+ .|++++.++++++++..++++ .|++.+|++++|++||+|||.+|.+.+++ +... + .
T Consensus 102 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~ 181 (388)
T PRK07045 102 LIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPY 181 (388)
T ss_pred EccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCC
Confidence 37899999999999864 788999999999999988774 56766788999999999999999999985 2221 1 1
Q ss_pred Cceeeeeeeeee-cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCC---C-CCHHHHHH
Q 014843 107 DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---S-PKLEELLE 181 (417)
Q Consensus 107 ~~vc~~vg~~a~-G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~---~-psL~~l~e 181 (417)
.+-|. ++.+.. .. ..+...+++ .+ ..+++| .||.+++ ....++ .+...... . .+.+++.+
T Consensus 182 ~~~~~-~~~~~~~~~-~~~~~~~~~--~~-------~~~~~~-~~p~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 246 (388)
T PRK07045 182 ATPMA-FGTIALTDS-VRECNRLYV--DS-------NQGLAY-FYPIGDQ--ATRLVV-SFPADEMQGYLADTTRTKLLA 246 (388)
T ss_pred Cccee-EEEEeccCC-ccccceEEE--cC-------CCceEE-EEEcCCC--cEEEEE-EeccccchhccCCCCHHHHHH
Confidence 12222 222211 11 011222222 11 257888 7998754 233332 22221111 1 12334333
Q ss_pred HHHHhC-CcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHh
Q 014843 182 RYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 260 (417)
Q Consensus 182 ~y~~~L-P~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~ 260 (417)
++.+.+ |..... ++.+. ....+..+|.+.....+.+.+||+++||||...+|++|.|+..+++.+.-|++.|..++.
T Consensus 247 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~ 324 (388)
T PRK07045 247 RLNEFVGDESADA-MAAIG-AGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLS 324 (388)
T ss_pred HHhhhcCccchHH-HhccC-cccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcC
Confidence 333222 111110 00110 011122334433222356689999999999999999999999999999889999988775
Q ss_pred CC
Q 014843 261 GD 262 (417)
Q Consensus 261 ~~ 262 (417)
.+
T Consensus 325 ~~ 326 (388)
T PRK07045 325 GQ 326 (388)
T ss_pred Cc
Confidence 43
No 25
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.56 E-value=3.6e-13 Score=135.25 Aligned_cols=208 Identities=15% Similarity=0.123 Sum_probs=126.6
Q ss_pred eccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCC---c
Q 014843 33 EFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD---G 108 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~---~ 108 (417)
..++|..|++.|.+++.+ .|++++.+++|++++..+++++|++.+|.+++|++||+|||..|.+.++++...+.. .
T Consensus 100 ~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~ 179 (382)
T TIGR01984 100 YVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQ 179 (382)
T ss_pred EEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCC
Confidence 458999999999999988 599999999999999999999998877888999999999999999999876442211 1
Q ss_pred eeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHHHH
Q 014843 109 VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERYWD 185 (417)
Q Consensus 109 vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y~~ 185 (417)
.|.+ ..+ . .+..........+. ..+.++ .+|-.++. .... .+....... ...+-++..+++.+
T Consensus 180 ~~~~-~~~-~-~~~~~~~~~~~~~~--------~~g~~~-~~p~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (382)
T TIGR01984 180 TALI-ANI-R-HEQPHQGCAFERFT--------PHGPLA-LLPLKDNY-RSSL-VWCLPSKQADTIANLPDAEFLAELQQ 245 (382)
T ss_pred EEEE-EEE-E-ecCCCCCEEEEeeC--------CCCCeE-ECcCCCCC-CEEE-EEECCHHHHHHHHcCCHHHHHHHHHH
Confidence 2221 111 1 11000111111111 123444 57887651 1222 222211000 01123334444444
Q ss_pred hCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 186 LMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 186 ~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
.++.. +.++...... ...|.......+...+|++++||||..++|++|.|+..+++.+..|++.|..++
T Consensus 246 ~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~ 314 (382)
T TIGR01984 246 AFGWR----LGKITQVGER-KTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR 314 (382)
T ss_pred HHhhh----ccCeEEcCCc-cEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc
Confidence 33211 1111111000 123332211224556899999999999999999999999999888888887665
No 26
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.56 E-value=2.2e-13 Score=138.06 Aligned_cols=227 Identities=16% Similarity=0.109 Sum_probs=137.0
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCCcee
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC 110 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~~vc 110 (417)
+...+++..|++.|.+++.+.|++++.++++++++.++++++|++.+|++++|++||+|+|..|.+.++++...+. +-.
T Consensus 106 ~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~-~~~ 184 (392)
T PRK08773 106 LGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSR-HDY 184 (392)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceE-EEe
Confidence 4556899999999999999999999999999999999999999887788999999999999999988876543211 001
Q ss_pred eeeeeeee-cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHHHHh
Q 014843 111 LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERYWDL 186 (417)
Q Consensus 111 ~~vg~~a~-G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y~~~ 186 (417)
...+.++. ..+....+....-+.+ .+.+. .+|..++ ...+..++..... ...+..+..+++.+.
T Consensus 185 ~~~~~~~~v~~~~~~~~~~~~~~~~--------~g~~~-~lP~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (392)
T PRK08773 185 AQRGVVAFVDTEHPHQATAWQRFLP--------TGPLA-LLPFADG---RSSIVWTLPDAEAERVLALDEAAFSRELTQA 252 (392)
T ss_pred ccEEEEEEEEccCCCCCEEEEEeCC--------CCcEE-EEECCCC---ceEEEEECCHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111111 0000111111111111 13333 4566543 2222222221100 001222333333333
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC-CCC
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD-FVD 265 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~-~ls 265 (417)
++..-+ .++.... ...+|.+.....+...+|++++||||..++|+.|-|+..+++.+..|++.|.++++.+ +.+
T Consensus 253 ~~~~~~----~~~~~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~ 327 (392)
T PRK08773 253 FAARLG----EVRVASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWA 327 (392)
T ss_pred Hhhhhc----CeEecCC-ccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcc
Confidence 322111 1111111 1235554433335677999999999999999999999999999999999999988664 222
Q ss_pred hhhHhhhcCCCc
Q 014843 266 SYSLSLLNPYMP 277 (417)
Q Consensus 266 a~~L~~l~~Yq~ 277 (417)
. ...++.|+.
T Consensus 328 ~--~~~l~~y~~ 337 (392)
T PRK08773 328 A--PHRLQRWAR 337 (392)
T ss_pred c--HHHHHHHHH
Confidence 2 223567775
No 27
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.54 E-value=3.2e-13 Score=135.99 Aligned_cols=211 Identities=12% Similarity=0.105 Sum_probs=130.5
Q ss_pred eccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCCc---
Q 014843 33 EFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDG--- 108 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~~--- 108 (417)
..+++..|++.|.+++.+ .|++++.+++++++...++++.|++.+|.+++|++||+|+|..|.+.++++...+...
T Consensus 107 ~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~ 186 (395)
T PRK05732 107 YVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQ 186 (395)
T ss_pred EEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCC
Confidence 458899999999999877 5789999999999999999999988778889999999999999999988755432221
Q ss_pred eeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC--CCCCHHHHHHHHHHh
Q 014843 109 VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--GSPKLEELLERYWDL 186 (417)
Q Consensus 109 vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~--~~psL~~l~e~y~~~ 186 (417)
+|. +..+ .. .....+..+..+. . .+.++ .+|.++++ ...+.+...+... ...+.+++.+++.+.
T Consensus 187 ~~~-~~~~-~~-~~~~~~~~~~~~~--~------~g~~~-~~p~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (395)
T PRK05732 187 VAV-IANV-TT-SEAHQGRAFERFT--E------HGPLA-LLPMSDGR--CSLVWCHPLEDAEEVLSWSDAQFLAELQQA 252 (395)
T ss_pred EEE-EEEE-Ee-cCCCCCEEEEeec--C------CCCEE-EeECCCCC--eEEEEECCHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1111 10 1111122221111 1 34566 68887652 3322221111000 011334455555443
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 262 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~ 262 (417)
++. +-..+.+. .. ....|.......+...+|++++||||...+|++|.|+..+++.+..||+.|..+++.+
T Consensus 253 ~~~-~~~~~~~~--~~--~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~ 323 (395)
T PRK05732 253 FGW-RLGRITHA--GK--RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARG 323 (395)
T ss_pred HHh-hhcceeec--CC--cceecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcC
Confidence 321 10001110 00 0122322112234567899999999999999999999999999999999998888654
No 28
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.53 E-value=5.3e-13 Score=135.72 Aligned_cols=224 Identities=19% Similarity=0.111 Sum_probs=133.9
Q ss_pred eeeccChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEEEEecC-C--cEEEEEEEEeccCCCchhhhhhhcCCCC
Q 014843 31 ILEFREPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHLIIDAMGNFSPVVKQIRSGRKP 106 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~V~t~~-g--~~~~ARlVIDA~G~~Spiarql~~g~~~ 106 (417)
+...+.+..|++.|.+++.+. |++++.+++|++++.+++++.|+..+ + .+++|++||+|||..|.+.++++.....
T Consensus 114 ~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~ 193 (415)
T PRK07364 114 LGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKG 193 (415)
T ss_pred cEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCcee
Confidence 344556667999999998774 68999999999999999998887653 3 3699999999999999999887544211
Q ss_pred ---CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHH
Q 014843 107 ---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELL 180 (417)
Q Consensus 107 ---~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~ 180 (417)
...|..+... .+.......+..+. ..+++| .||..++ ....+ .+...... ...+.+++.
T Consensus 194 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------~~g~~~-~~p~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 258 (415)
T PRK07364 194 WKYWQSCVTATVK---HEAPHNDIAYERFW--------PSGPFA-ILPLPGN--RCQIV-WTAPHAQAKALLALPEAEFL 258 (415)
T ss_pred ecCCCEEEEEEEE---ccCCCCCEEEEEec--------CCCCeE-EeECCCC--CEEEE-EECCHHHHHHHHCCCHHHHH
Confidence 1122211111 01111111111111 136788 7898865 23332 22111100 111334444
Q ss_pred HHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHh
Q 014843 181 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 260 (417)
Q Consensus 181 e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~ 260 (417)
+.+.+.++..-+ +++... ....+|.+.....+...+|++++||||..++|+.|.|+..+++.+..|++.|..+++
T Consensus 259 ~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~ 333 (415)
T PRK07364 259 AELQQRYGDQLG----KLELLG-DRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQ 333 (415)
T ss_pred HHHHHHhhhhhc----CceecC-CCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHh
Confidence 444433322111 111111 012345433222245679999999999999999999999999999999999988886
Q ss_pred CC-CCC-hhhHhhhcCCCc
Q 014843 261 GD-FVD-SYSLSLLNPYMP 277 (417)
Q Consensus 261 ~~-~ls-a~~L~~l~~Yq~ 277 (417)
.+ +++ .+.| +.|+.
T Consensus 334 ~~~~~~~~~~L---~~Y~~ 349 (415)
T PRK07364 334 RGEDIGSLAVL---KRYER 349 (415)
T ss_pred cCCCcccHHHH---HHHHH
Confidence 43 343 3444 55553
No 29
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.50 E-value=2.8e-12 Score=130.56 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=136.6
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCC---c
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD---G 108 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~---~ 108 (417)
...+++..|++.|.+++.+.|++++.++++++++.++++|+|++.+|++++|++||+|||..|.+.++++...+.. +
T Consensus 106 g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~ 185 (405)
T PRK05714 106 GHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLH 185 (405)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCc
Confidence 4568899999999999988899999999999999999999998878889999999999999999988875543221 1
Q ss_pred eeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeC-CCC---CCCCHHHHHHHHH
Q 014843 109 VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID-PQA---GSPKLEELLERYW 184 (417)
Q Consensus 109 vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~-~~~---~~psL~~l~e~y~ 184 (417)
.|.+. .+ . .++........-+.+ .+.++ .+|..++....-..++.... ... ...+.+++.+++.
T Consensus 186 ~~~~~-~~-~-~~~~~~~~~~~~~~~--------~g~~~-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (405)
T PRK05714 186 HAIVT-SV-R-CSEPHRATAWQRFTD--------DGPLA-FLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALE 253 (405)
T ss_pred eEEEE-EE-E-cCCCCCCEEEEEcCC--------CCCeE-EeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHH
Confidence 12111 11 1 111111111111111 24455 57875431111122221111 000 0112333344443
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCC-
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF- 263 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~- 263 (417)
+.++.. +.++.... ....+|.+.....+...+|++++||||...+|+.|-|+..+++.+.-|++.|..++..+.
T Consensus 254 ~~~~~~----~~~~~~~~-~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~ 328 (405)
T PRK05714 254 RAFEGR----LGEVLSAD-PRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGER 328 (405)
T ss_pred HHHHHH----hCCceecC-CccEEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCC
Confidence 333211 11110000 012244443222245678999999999999999999999999999999999988886653
Q ss_pred CC-hhhHhhhcCCCc
Q 014843 264 VD-SYSLSLLNPYMP 277 (417)
Q Consensus 264 ls-a~~L~~l~~Yq~ 277 (417)
.+ .+. ++.|+.
T Consensus 329 ~~~~~~---L~~Ye~ 340 (405)
T PRK05714 329 LADVRV---LSRFER 340 (405)
T ss_pred cccHHH---HHHHHH
Confidence 33 333 456653
No 30
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.49 E-value=1.6e-12 Score=132.55 Aligned_cols=213 Identities=15% Similarity=0.059 Sum_probs=132.4
Q ss_pred eeeccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC---
Q 014843 31 ILEFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP--- 106 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~--- 106 (417)
....+.+..|++.|.+++.+ .|+++..+++|++++.+++++.|+..+|++++|++||+|||.+|.+.++++...+.
T Consensus 104 ~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~ 183 (405)
T PRK08850 104 LGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDY 183 (405)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEee
Confidence 45568889999999999987 47899999999999999999999988888999999999999999999988665321
Q ss_pred CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHH
Q 014843 107 DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERY 183 (417)
Q Consensus 107 ~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y 183 (417)
...|.+ ..+ .. ++......+..+++ .+.++ .+|..++ +.++.+ ........ ...+.+++.+++
T Consensus 184 ~~~~~~-~~v-~~-~~~~~~~~~~~~~~--------~g~~~-~lp~~~~-~~~~~~-w~~~~~~~~~~~~~~~~~~~~~l 249 (405)
T PRK08850 184 GHSALV-ANV-RT-VDPHNSVARQIFTP--------QGPLA-FLPMSEP-NMSSIV-WSTEPLRAEALLAMSDEQFNKAL 249 (405)
T ss_pred ccEEEE-EEE-Ec-cCCCCCEEEEEEcC--------CCceE-EEECCCC-CeEEEE-EECCHHHHHHHHcCCHHHHHHHH
Confidence 122221 111 10 11111111111211 24444 4687643 112221 11111000 111233444444
Q ss_pred HHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC
Q 014843 184 WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 262 (417)
Q Consensus 184 ~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~ 262 (417)
.+.++.. +..++.... ...+|.+.....+...+||+++||||-..+|+.|-|+..+++.+.-|++.|..+++.+
T Consensus 250 ~~~~~~~----~~~~~~~~~-~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~ 323 (405)
T PRK08850 250 TAEFDNR----LGLCEVVGE-RQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQG 323 (405)
T ss_pred HHHHhhh----hCcEEEccc-ccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4433211 111111111 1234554322235667999999999999999999999999999999999998888644
No 31
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.48 E-value=1.5e-12 Score=131.42 Aligned_cols=223 Identities=19% Similarity=0.149 Sum_probs=135.2
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCC---CC
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK---PD 107 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~---~~ 107 (417)
....+++..|++.|.+++.+.|+..+.+++|++++.+++++.|++.+|++++|++||+|||..|.+.++++.... ..
T Consensus 104 ~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~ 183 (388)
T PRK07494 104 FGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYP 183 (388)
T ss_pred cEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCC
Confidence 344589999999999999887766688999999999999999988778899999999999999999888754421 11
Q ss_pred ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHHH
Q 014843 108 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERYW 184 (417)
Q Consensus 108 ~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y~ 184 (417)
..|.++... ...+...... .-+. ..++++ .+|..++ ....+........ ...+.+++.+.+.
T Consensus 184 ~~~~~~~v~-~~~~~~~~~~--~~~~--------~~g~~~-~~Pl~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 248 (388)
T PRK07494 184 QKALVLNFT-HSRPHQNVST--EFHT--------EGGPFT-QVPLPGR---RSSLVWVVRPAEAERLLALSDAALSAAIE 248 (388)
T ss_pred CEEEEEEEe-ccCCCCCEEE--EEeC--------CCCcEE-EEECCCC---cEEEEEECCHHHHHHHHcCCHHHHHHHHH
Confidence 223221111 1111111111 1111 134555 5787654 2222222111110 1123444444443
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCC
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFV 264 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~l 264 (417)
+.++..-+ .++... ....+|.......+...+|++++||||...+|++|.|+..+++.+.-|++.|.... .+.-
T Consensus 249 ~~~~~~l~----~~~~~~-~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~-~~~~ 322 (388)
T PRK07494 249 ERMQSMLG----KLTLEP-GRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP-EDPG 322 (388)
T ss_pred HHHhhhcC----CeEEcc-CCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC-CCcc
Confidence 33432222 111111 11345554322335667999999999999999999999999999888888876532 1222
Q ss_pred ChhhHhhhcCCCc
Q 014843 265 DSYSLSLLNPYMP 277 (417)
Q Consensus 265 sa~~L~~l~~Yq~ 277 (417)
+.+. ++.|+.
T Consensus 323 ~~~~---L~~Y~~ 332 (388)
T PRK07494 323 SAAV---LAAYDR 332 (388)
T ss_pred hHHH---HHHHHH
Confidence 3333 456664
No 32
>PRK08244 hypothetical protein; Provisional
Probab=99.47 E-value=5.9e-12 Score=132.07 Aligned_cols=221 Identities=21% Similarity=0.226 Sum_probs=138.5
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEec--CC-cEEEEEEEEeccCCCchhhhhhhcCC---C
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMGNFSPVVKQIRSGR---K 105 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~--~g-~~~~ARlVIDA~G~~Spiarql~~g~---~ 105 (417)
...+.+..|.+.|.+.+.+.|++++.++++++++.++++++|+.. +| ++++|++||+|||..|.+.++++... +
T Consensus 94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~ 173 (493)
T PRK08244 94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTD 173 (493)
T ss_pred EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCC
Confidence 345889999999999999999999999999999999999887653 35 47999999999999999998875432 1
Q ss_pred CCceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC-C-CCC-CHHHHHHH
Q 014843 106 PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-A-GSP-KLEELLER 182 (417)
Q Consensus 106 ~~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~-~-~~p-sL~~l~e~ 182 (417)
....+. ++.+ -+.+.........+ . ..+.+| .+|..++ ...++........ . ..+ +.+++.+.
T Consensus 174 ~~~~~~-~~~~--~~~~~~~~~~~~~~---~-----~~g~~~-~~P~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
T PRK08244 174 ATFTAM-LGDV--VLKDPPPSSVLSLC---T-----REGGVM-IVPLSGG--IYRVLIIDPERPQVPKDEPVTLEELKTS 239 (493)
T ss_pred cceEEE-EEEE--EecCCCCcceeEEE---e-----CCceEE-EEECCCC--eEEEEEEcCCcccccCCCCCCHHHHHHH
Confidence 121121 1111 11111111111111 1 136677 7999865 2333332111111 1 112 67777776
Q ss_pred HHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC
Q 014843 183 YWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 262 (417)
Q Consensus 183 y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~ 262 (417)
+.+.++..-+. .+..+. ..++...........+||+++||||...+|+.|-|+...++.+.-|+..|+.+++ +
T Consensus 240 l~~~~~~~~~~--~~~~~~----~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~-g 312 (493)
T PRK08244 240 LIRICGTDFGL--NDPVWM----SRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK-G 312 (493)
T ss_pred HHHhhCCCCCc--CCeeEE----EecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHc-C
Confidence 66555321111 111111 1222211111244568999999999999999999999999999999999999885 3
Q ss_pred CCChhhHhhhcCCC
Q 014843 263 FVDSYSLSLLNPYM 276 (417)
Q Consensus 263 ~lsa~~L~~l~~Yq 276 (417)
..++..| ..|+
T Consensus 313 ~~~~~lL---~~Ye 323 (493)
T PRK08244 313 WAPDWLL---DSYH 323 (493)
T ss_pred CCCchhh---hhhH
Confidence 3344444 5555
No 33
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.43 E-value=1.4e-11 Score=125.68 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=143.8
Q ss_pred cceeeccChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCeEEEEec-CCcEEEEEEEEeccCCCchhhhhhhcCC--
Q 014843 29 FSILEFREPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNFSPVVKQIRSGR-- 104 (417)
Q Consensus 29 ~~~~~~Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~v~V~t~-~g~~~~ARlVIDA~G~~Spiarql~~g~-- 104 (417)
......+-+..|++.|.+++.+.+ .+++.+++|+.++.+++++.|+.. +|++++|++||+|||.+|.+-++++...
T Consensus 95 ~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~ 174 (387)
T COG0654 95 GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFS 174 (387)
T ss_pred CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCcc
Confidence 556677999999999999999877 699999999999999999998877 8889999999999999999999988221
Q ss_pred --CCCceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC---CCCCCCHHHH
Q 014843 105 --KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP---QAGSPKLEEL 179 (417)
Q Consensus 105 --~~~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~---~~~~psL~~l 179 (417)
.....|.++....+ .+.......+|.+. +.+.. +|-++. .+..++..... ....-+.++.
T Consensus 175 ~~~y~~~~l~~~~~~~-~~~~~~~~~~~~~~---------~~~~~--~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 239 (387)
T COG0654 175 GRDYGQTALVANVEPE-EPHEGRAGERFTHA---------GPFAL--LPLPDN---RSSVVWSLPPGPAEDLQGLSDEEF 239 (387)
T ss_pred CCCCCceEEEEEeecC-CCCCCeEEEEecCC---------CceEE--EecCCC---ceeEEEECChhhHHHHhcCCHHHH
Confidence 11222322221111 11111111122221 22222 466532 22222211110 1111156666
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHH
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 259 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL 259 (417)
.+++.+.+|.... +...... ...-.+|.-.....+...+|++++||||-.++|+.|-|+.-+++.+--|++.|.++.
T Consensus 240 ~~~l~~~~~~~~~--~~~~~~~-~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~ 316 (387)
T COG0654 240 LRELQRRLGERDP--LGRVTLV-SSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAP 316 (387)
T ss_pred HHHHHHhcCcccc--cceEEEc-cccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 6777777765521 1111111 111234442223346667999999999999999999999999999999999999999
Q ss_pred hC-CCCChhhHhhhcCCC
Q 014843 260 RG-DFVDSYSLSLLNPYM 276 (417)
Q Consensus 260 ~~-~~lsa~~L~~l~~Yq 276 (417)
.. .+ ...| +.|+
T Consensus 317 ~~~~~--~~~L---~~Y~ 329 (387)
T COG0654 317 RPGAD--AAAL---AAYE 329 (387)
T ss_pred hcCcc--HHHH---HHHH
Confidence 84 33 4444 5555
No 34
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.41 E-value=4.9e-12 Score=128.09 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=125.8
Q ss_pred eeeccChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC--CCC
Q 014843 31 ILEFREPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR--KPD 107 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~--~~~ 107 (417)
....|.|..|++.|.+++.+.+ .+++.++++++++.+++++.|+..++ +++|++||+|||.+|.+.++++.+. ++.
T Consensus 97 ~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y 175 (374)
T PRK06617 97 LGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY 175 (374)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC
Confidence 4566999999999999999876 68999999999999999999988655 8999999999999999999875543 222
Q ss_pred ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC---CCCCHHHHHHHHH
Q 014843 108 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---GSPKLEELLERYW 184 (417)
Q Consensus 108 ~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~---~~psL~~l~e~y~ 184 (417)
..|.+.....+. ......+.-+.+ .|.+| .+|..++ .....+.+...... ...+. +.+.+.+
T Consensus 176 ~~~~~~~v~~~~---~~~~~~~~~~~~--------~g~~~-~lPl~~~--~~~~~vw~~~~~~~~~~~~~~~-~~~~~~~ 240 (374)
T PRK06617 176 QTALTFNIKHEK---PHENCAMEHFLP--------LGPFA-LLPLKDQ--YASSVIWSTSSDQAALIVNLPV-EEVRFLT 240 (374)
T ss_pred CeEEEEEEeccC---CCCCEEEEEecC--------CCCEE-EeECCCC--CeEEEEEeCCHHHHHHHHcCCH-HHHHHHH
Confidence 333332221111 111111111111 24577 7898765 11222222211000 00112 2222222
Q ss_pred Hh-CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHH
Q 014843 185 DL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 255 (417)
Q Consensus 185 ~~-LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI 255 (417)
+. .+. .+..+... .....+|.+.....+...+|++++||||..++|+.|-|+.-+++.+.-|++.|
T Consensus 241 ~~~~~~----~~~~i~~~-~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L 307 (374)
T PRK06617 241 QRNAGN----SLGKITID-SEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIV 307 (374)
T ss_pred HHhhch----hcCceeec-cceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHH
Confidence 21 110 01122111 11245666543333567799999999999999999999999999966665544
No 35
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.41 E-value=2e-11 Score=126.46 Aligned_cols=231 Identities=18% Similarity=0.153 Sum_probs=136.4
Q ss_pred ceeeccChHHHHHHHHHHHhhcC---cEEEcCceEEEEEEE-------CCeEEEEecCCcEEEEEEEEeccCCCchhhhh
Q 014843 30 SILEFREPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY-------ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 30 ~~~~~Vdr~~L~~~L~~ka~~~G---g~i~~~t~v~~i~~~-------~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarq 99 (417)
.....+++..|++.|.+++.+.+ +++..+++|++++.. ++++.|+..+|++++|++||+|||.+|.+.++
T Consensus 109 ~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~ 188 (437)
T TIGR01989 109 DMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKA 188 (437)
T ss_pred ceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHH
Confidence 44566899999999999998865 799999999999863 57888888888999999999999999999998
Q ss_pred hhcCCCC---CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCC---C
Q 014843 100 IRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---S 173 (417)
Q Consensus 100 l~~g~~~---~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~---~ 173 (417)
++..... ...|.+.....+... .....+..+.+ .|.++ .+|-+++ .... ..+....... .
T Consensus 189 ~gi~~~g~~y~q~~~v~~v~~~~~~--~~~~~~~~f~~--------~g~~~-~lPl~~~--~~~~-~~~~~~~~~~~~~~ 254 (437)
T TIGR01989 189 ANIDTTGWNYNQHAVVATLKLEEAT--ENDVAWQRFLP--------TGPIA-LLPLPDN--NSTL-VWSTSPEEALRLLS 254 (437)
T ss_pred cCCCccceeeccEEEEEEEEcccCC--CCCeEEEEECC--------CCCEE-EeECCCC--CEEE-EEeCCHHHHHHHHc
Confidence 8655321 112221111111111 11111122211 35566 5687754 1222 1221111000 0
Q ss_pred CCHHHHHHHHHHhC-------Cc-----c--------cCCC---------CCc--cceEEeeeeecCCCCCCCCCCCCCC
Q 014843 174 PKLEELLERYWDLM-------PE-----Y--------QGVT---------LDN--LEIQRVIYGIFPTYRDSPLPAAFNR 222 (417)
Q Consensus 174 psL~~l~e~y~~~L-------P~-----y--------~g~~---------l~~--~~~~~~~~G~~P~~~~~p~~~~~dr 222 (417)
-+-+++.+.+.+.+ |. + .+.. ... .++.......+|.......+...+|
T Consensus 255 ~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 334 (437)
T TIGR01989 255 LPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKR 334 (437)
T ss_pred CCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecccceeEEecccchhhccCCC
Confidence 02223333332222 10 0 0000 000 0001111134555332233566799
Q ss_pred EEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCC-CCh-hhHhhhcCCCc
Q 014843 223 ILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF-VDS-YSLSLLNPYMP 277 (417)
Q Consensus 223 iLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~-lsa-~~L~~l~~Yq~ 277 (417)
++++||||...||+.|-|+..+++.+.-|++.|..+++.+. ++. +. ++.|+.
T Consensus 335 v~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~---L~~Y~~ 388 (437)
T TIGR01989 335 VALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISS---LKPYER 388 (437)
T ss_pred EEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHH---HHHHHH
Confidence 99999999999999999999999999999999999987653 332 33 455653
No 36
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.36 E-value=5.2e-11 Score=120.88 Aligned_cols=221 Identities=13% Similarity=0.092 Sum_probs=129.4
Q ss_pred eeeccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCC---C
Q 014843 31 ILEFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK---P 106 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~---~ 106 (417)
+...+.+..|+..|.+++.+ .|++++.++++++++.++++++|+..+|.+++|++||+|||.+|++.++++.+.. .
T Consensus 103 ~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~ 182 (384)
T PRK08849 103 LGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDY 182 (384)
T ss_pred cEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccC
Confidence 34556777888899888866 5689999999999999999999998888899999999999999999999865421 1
Q ss_pred CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC--CCCCCCHHHHHHHHH
Q 014843 107 DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP--QAGSPKLEELLERYW 184 (417)
Q Consensus 107 ~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~--~~~~psL~~l~e~y~ 184 (417)
.+.|.++.... ..... ...+.-+.+- +-.. ..|-.++ ......+...+. .....+.+++.+++.
T Consensus 183 ~~~~~v~~~~~-~~~~~--~~~~~~~~~~--------g~~~-~~pl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (384)
T PRK08849 183 RQHCMLINVET-EQPQQ--DITWQQFTPS--------GPRS-FLPLCGN--QGSLVWYDSPKRIKQLSAMNPEQLRSEIL 248 (384)
T ss_pred CCeEEEEEEEc-CCCCC--CEEEEEeCCC--------CCEE-EeEcCCC--ceEEEEECCHHHHHHHHcCCHHHHHHHHH
Confidence 22232222111 11111 1111111110 1111 1344322 112221110000 000113455565565
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCC
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFV 264 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~l 264 (417)
+.+|..- .++.+. ....+|.......+...+|++++||||-.++|+.|-|+..+++.+..|++.+.. .+.-
T Consensus 249 ~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~---~~~~ 319 (384)
T PRK08849 249 RHFPAEL----GEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK---QGVL 319 (384)
T ss_pred HHhhhhh----CcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh---cCCC
Confidence 5555321 122111 224555543223356779999999999999999999999999997766655431 2333
Q ss_pred ChhhHhhhcCCCc
Q 014843 265 DSYSLSLLNPYMP 277 (417)
Q Consensus 265 sa~~L~~l~~Yq~ 277 (417)
+++.| +.|+.
T Consensus 320 ~~~~L---~~Ye~ 329 (384)
T PRK08849 320 NDASF---ARYER 329 (384)
T ss_pred cHHHH---HHHHH
Confidence 34444 55554
No 37
>PRK07190 hypothetical protein; Provisional
Probab=99.36 E-value=1.5e-10 Score=122.21 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=147.8
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC---CCCcee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR---KPDGVC 110 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~---~~~~vc 110 (417)
.+.+..+.+.|.+++.+.|++++.+++|++++.++++++|.+.+|++++||+||+|||..|.+.++++-+. .+...+
T Consensus 105 ~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~ 184 (487)
T PRK07190 105 MLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIW 184 (487)
T ss_pred ecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeE
Confidence 47788999999999999999999999999999999999888777789999999999999999999876542 222222
Q ss_pred eeeeeeee-cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHHHHHHHHhCCc
Q 014843 111 LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPE 189 (417)
Q Consensus 111 ~~vg~~a~-G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l~e~y~~~LP~ 189 (417)
.++-.... .+++.. ..+.+.. . .+.+.| +|.+++ ...+..... ...++.+++.+...+.+..
T Consensus 185 ~~~d~~~~~~~~~~~-~~~~~~~---~-----~g~~~~--~p~~~~---~~r~~~~~~---~~~~t~~~~~~~l~~~~~~ 247 (487)
T PRK07190 185 AVIDGVIDTDFPKVP-EIIVFQA---E-----TSDVAW--IPREGE---IDRFYVRMD---TKDFTLEQAIAKINHAMQP 247 (487)
T ss_pred EEEEEEEccCCCCCc-ceEEEEc---C-----CCCEEE--EECCCC---EEEEEEEcC---CCCCCHHHHHHHHHHhcCC
Confidence 22211111 222211 1111111 1 245556 787654 222222121 1223677766666554421
Q ss_pred ccCCCCCccceEEeeeeecCCCCCCCCCCC-CCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCChhh
Q 014843 190 YQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS 268 (417)
Q Consensus 190 y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~-~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~lsa~~ 268 (417)
+. ..+.+..+. ..+|.....-.+.. .+||+++||||-..+|+.|-|+-..++.+.-|+..|+.+++.. ....-
T Consensus 248 ~~-~~~~~~~w~----s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~-a~~~l 321 (487)
T PRK07190 248 HR-LGFKEIVWF----SQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG-ASPEL 321 (487)
T ss_pred CC-CceEEEEEE----EEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC-CcHHH
Confidence 21 222222221 23444321122343 5899999999999999999999999999999999998877643 33333
Q ss_pred HhhhcCCC--------ccchHHHHHHhhccccc
Q 014843 269 LSLLNPYM--------PNLSASWLFQRAMSAKQ 293 (417)
Q Consensus 269 L~~l~~Yq--------~nl~~~~~lqk~M~~~~ 293 (417)
+..|+ ..+..+-.+.++|...+
T Consensus 322 ---LdtY~~eR~p~a~~vl~~t~~~~~~~~~~~ 351 (487)
T PRK07190 322 ---LQSYEAERKPVAQGVIETSGELVRSTKYSA 351 (487)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45555 23444445556665443
No 38
>PRK06753 hypothetical protein; Provisional
Probab=99.35 E-value=3e-11 Score=121.23 Aligned_cols=203 Identities=23% Similarity=0.232 Sum_probs=120.4
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCCceee
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCL 111 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~~vc~ 111 (417)
...|+|..|++.|.+.+.. .+++.++++++++.+++++.|++.+|+++++++||+|||.+|.+.+++....++.. +.
T Consensus 92 ~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~-~g 168 (373)
T PRK06753 92 NVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRY-QG 168 (373)
T ss_pred cccccHHHHHHHHHHhCCC--ceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceE-cc
Confidence 3459999999999998764 58999999999999999999988888899999999999999999999865432221 00
Q ss_pred eeeeeeecCC---CCCc-ceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeC--CC-C-CCCCHHHHHHHH
Q 014843 112 VVGSCARGFK---DNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID--PQ-A-GSPKLEELLERY 183 (417)
Q Consensus 112 ~vg~~a~G~~---d~~~-gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~--~~-~-~~psL~~l~e~y 183 (417)
..+..|.. +... ......+. ..+++| .||..++ .++.+.... .. . ....-++.+.++
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~-~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (373)
T PRK06753 169 --YTCFRGLIDDIDLKLPDCAKEYWG--------TKGRFG-IVPLLNN----QAYWFITINAKERDPKYSSFGKPHLQAY 233 (373)
T ss_pred --eEEEEEEeccccccCccceEEEEc--------CCCEEE-EEEcCCC----eEEEEEEeccccCCcccccccHHHHHHH
Confidence 01111211 1001 11111111 247888 8998764 233332221 11 1 111112223344
Q ss_pred HHhCC-cccCCCCCccceEEeeeeecCCCCCCC-CCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHH
Q 014843 184 WDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 255 (417)
Q Consensus 184 ~~~LP-~y~g~~l~~~~~~~~~~G~~P~~~~~p-~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI 255 (417)
++..| ..+.+ ++... .... -..+.+...+ .+...+|++++||||...+|++|.|+..+++.+..|++.|
T Consensus 234 ~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L 304 (373)
T PRK06753 234 FNHYPNEVREI-LDKQS-ETGI-LHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCL 304 (373)
T ss_pred HhcCChHHHHH-HHhCC-cccc-eeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHh
Confidence 43221 11111 00000 0000 0112221111 1345689999999999999999999999999977666655
No 39
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.35 E-value=1.7e-10 Score=122.60 Aligned_cols=237 Identities=15% Similarity=0.097 Sum_probs=136.7
Q ss_pred eeccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEec--CC--cEEEEEEEEeccCCCchhhhhhhcCCCC
Q 014843 32 LEFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPVVKQIRSGRKP 106 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~--~g--~~~~ARlVIDA~G~~Spiarql~~g~~~ 106 (417)
...+++..|.+.|.+.+.+ .|++|+.++++++++.++++|+|+.. +| ++++|++||+|||.+|.+.++++.....
T Consensus 107 ~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~ 186 (538)
T PRK06183 107 RNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFED 186 (538)
T ss_pred hccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeC
Confidence 3458889999999999877 58999999999999999999998765 45 4799999999999999999988543211
Q ss_pred C---ceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEee-CCCCCCCCHHHHHHH
Q 014843 107 D---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI-DPQAGSPKLEELLER 182 (417)
Q Consensus 107 ~---~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~-~~~~~~psL~~l~e~ 182 (417)
. ..+.++......... ........+ .+ ++.+++ +|..++ ...+.+... +++.....-.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~----~~~~~~--~p~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~ 253 (538)
T PRK06183 187 LTFPERWLVVDVLIANDPL-GGPHTYQYC---DP----ARPYTS--VRLPHG---RRRWEFMLLPGETEEQLASPENVWR 253 (538)
T ss_pred CCccceEEEEEEecccCcc-CCCceEEEE---CC----CCCEEE--EEcCCC---eEEEEEEeCCCCChhhcCCHHHHHH
Confidence 1 112111110000000 000111111 11 223333 566544 222223222 122111111233344
Q ss_pred HHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCC
Q 014843 183 YWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 262 (417)
Q Consensus 183 y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~ 262 (417)
+++... ......++.+...-.+.. ....+...+||+++||||-..+|+.|-|....++.+.-|+..|+..++ +
T Consensus 254 ~l~~~~----~~~~~~~~~~~~~~~~~~--~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~-g 326 (538)
T PRK06183 254 LLAPWG----PTPDDAELIRHAVYTFHA--RVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLR-G 326 (538)
T ss_pred HHHhhC----CCCcceEEEEEEeeeEcc--EEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHc-C
Confidence 444331 111222222211111111 011134568999999999999999999999999999999999886664 3
Q ss_pred CCChhhHhhhcCCC--------ccchHHHHHHhhccc
Q 014843 263 FVDSYSLSLLNPYM--------PNLSASWLFQRAMSA 291 (417)
Q Consensus 263 ~lsa~~L~~l~~Yq--------~nl~~~~~lqk~M~~ 291 (417)
..+++.| ..|+ ..+..+..+.++|+.
T Consensus 327 ~~~~~~L---~~Ye~eR~p~~~~~~~~s~~~~~~~~~ 360 (538)
T PRK06183 327 RAGDALL---DTYEQERRPHARAMIDLAVRLGRVICP 360 (538)
T ss_pred CCcHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 4444555 4444 344455556666543
No 40
>PRK07588 hypothetical protein; Provisional
Probab=99.32 E-value=5.1e-10 Score=113.51 Aligned_cols=208 Identities=15% Similarity=0.101 Sum_probs=117.1
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC-C-ceee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP-D-GVCL 111 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~-~-~vc~ 111 (417)
.+.|..|++.|.+.+ ..|++++.+++|++++..+++|.|++.+|+++++++||+|||.+|.+.+++....+. . ....
T Consensus 99 ~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~ 177 (391)
T PRK07588 99 SLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGC 177 (391)
T ss_pred EEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCc
Confidence 488999999998865 447899999999999999999999988888899999999999999998875332211 1 1111
Q ss_pred ee-eeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCC-C---HHHHHHHHHHh
Q 014843 112 VV-GSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP-K---LEELLERYWDL 186 (417)
Q Consensus 112 ~v-g~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~p-s---L~~l~e~y~~~ 186 (417)
.+ .....+..... ......+. .+ +.++- .||..++ ...+.+.........+ + ..+.+.+.+..
T Consensus 178 ~~~~~~~~~~~~~~-~~~~~~~~--~~-----g~~~~-~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (391)
T PRK07588 178 KVAACVVDGYRPRD-ERTYVLYN--EV-----GRQVA-RVALRGD---RTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGD 245 (391)
T ss_pred EEEEEEcCCCCCCC-CceEEEEe--CC-----CCEEE-EEecCCC---CeEEEEEEEcCCccccCCHHHHHHHHHHHhcc
Confidence 11 11111111000 11111111 11 23554 5787654 2233333322111111 2 22333333321
Q ss_pred C-CcccCCCCCccceEEeeeeecCCCCCCC-CCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHH
Q 014843 187 M-PEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 257 (417)
Q Consensus 187 L-P~y~g~~l~~~~~~~~~~G~~P~~~~~p-~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~ 257 (417)
. +..+.+ ++.+ ....-..++...+.+ .+...+|++++||||...+|+.|-|...+++.+..|++.|..
T Consensus 246 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~ 315 (391)
T PRK07588 246 VGWETPDI-LAAL--DDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR 315 (391)
T ss_pred CCccHHHH-HHhh--hcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence 1 111110 0000 000000011000001 133568999999999999999999999999998888887754
No 41
>PRK06184 hypothetical protein; Provisional
Probab=99.30 E-value=2.6e-10 Score=120.11 Aligned_cols=211 Identities=14% Similarity=0.109 Sum_probs=125.6
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEe---cCCcEEEEEEEEeccCCCchhhhhhhcCCCCC--
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD-- 107 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t---~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~-- 107 (417)
..+.+..|.+.|.+++.+.|++++.++++++++.++++++|+. .++++++|++||+|||.+|.+.++++......
T Consensus 104 ~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~ 183 (502)
T PRK06184 104 LMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETL 183 (502)
T ss_pred eecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcC
Confidence 4588899999999999999999999999999999999988875 34568999999999999999999886443211
Q ss_pred -c-eeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCHHHHHHHHHH
Q 014843 108 -G-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWD 185 (417)
Q Consensus 108 -~-vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL~~l~e~y~~ 185 (417)
. .+.++.....+... +....+.+ . ..+.+ ..+|..++ ..-.+.....+......+.+++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~----~~~~~~~~-~-----~~~~~-~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (502)
T PRK06184 184 GIDRMLVADVSLTGLDR----DAWHQWPD-G-----DMGMI-ALCPLPGT--DLFQIQAPLPPGGEPDLSADGLTALLAE 250 (502)
T ss_pred CCceEEEEEEEeecCCC----cceEEccC-C-----CCcEE-EEEEccCC--CeEEEEEEcCCCccCCCCHHHHHHHHHH
Confidence 1 22222111112111 11111100 0 11222 24666533 1211211122111111234343333332
Q ss_pred hCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhC
Q 014843 186 LMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 261 (417)
Q Consensus 186 ~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~ 261 (417)
..+.. ...+++..+ ...++.......+...+||+++||||-..+|+.|-|+...++.+.-|+..|+.+++.
T Consensus 251 ~~~~~-~~~~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g 321 (502)
T PRK06184 251 RTGRT-DIRLHSVTW----ASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG 321 (502)
T ss_pred hcCCC-Ccceeeeee----eeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC
Confidence 33211 111111111 122222111112345689999999999999999999999999999999999888765
No 42
>PRK06996 hypothetical protein; Provisional
Probab=99.29 E-value=2.7e-10 Score=116.35 Aligned_cols=209 Identities=11% Similarity=0.083 Sum_probs=121.2
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC---cEEEEEEEEeccCC-CchhhhhhhcCCCC
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN-FSPVVKQIRSGRKP 106 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g---~~~~ARlVIDA~G~-~Spiarql~~g~~~ 106 (417)
....|++..|++.|.+++.+.|+++..++++++++.++++|+|+..++ ++++|++||+|||. .|.+.++++...+.
T Consensus 108 ~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~ 187 (398)
T PRK06996 108 LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARR 187 (398)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCcee
Confidence 455699999999999999999999999999999999999999987643 58999999999996 45555655443211
Q ss_pred ---CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC-CC---CCCCHHHH
Q 014843 107 ---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QA---GSPKLEEL 179 (417)
Q Consensus 107 ---~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~-~~---~~psL~~l 179 (417)
...|.+.-...+.- ..+.....+.+ . |.+ ..+|-.++. .....++.+... .. ...+.++.
T Consensus 188 ~~~~~~~~~~~v~~~~~---~~~~~~~~~~~--~------G~~-~~lp~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 254 (398)
T PRK06996 188 RDYGQTAIVGTVTVSAP---RPGWAWERFTH--E------GPL-ALLPLGGPR-QADYALVWCCAPDEAARRAALPDDAF 254 (398)
T ss_pred eecCCeEEEEEEEccCC---CCCEEEEEecC--C------CCe-EEeECCCCC-CCcEEEEEECCHHHHHHHHcCCHHHH
Confidence 12232221111110 01111111111 1 211 134655331 000112111110 00 01123344
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHH
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 257 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~ 257 (417)
.+++.+.++.. +..+...... ..+|.+.....+...+||+++||||-..||+.|-|+..+++.+.-||+.|..
T Consensus 255 ~~~l~~~~~~~----~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 327 (398)
T PRK06996 255 LAELGAAFGTR----MGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD 327 (398)
T ss_pred HHHHHHHhccc----cCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence 44444433221 1122111111 2355543222356678999999999999999999999999997777777743
No 43
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.28 E-value=1.9e-10 Score=116.31 Aligned_cols=206 Identities=13% Similarity=0.103 Sum_probs=123.8
Q ss_pred ccChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC-CCCceee
Q 014843 34 FREPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR-KPDGVCL 111 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~-~~~~vc~ 111 (417)
.++|..|++.|.+++.+.| ++++.++++++++.+++++.|++.+|++++|++||+|||..|.+.+++.... ...+.+.
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~ 184 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVV 184 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCCCCCccccEE
Confidence 5899999999999998865 7999999999999998999998878889999999999999999988764322 2222211
Q ss_pred eeeeeee--cCCCC-CcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC-C---CCC-CHHHHHHHH
Q 014843 112 VVGSCAR--GFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-A---GSP-KLEELLERY 183 (417)
Q Consensus 112 ~vg~~a~--G~~d~-~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~-~---~~p-sL~~l~e~y 183 (417)
...+.. .++.. .......-.+ ..+++| .||..++ ..++... .+.... . ..+ +.+++.+.|
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~-~~p~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 252 (396)
T PRK08163 185 -YRAVIDVDDMPEDLRINAPVLWAG--------PHCHLV-HYPLRGG-EQYNLVV-TFHSREQEEWGVKDGSKEEVLSYF 252 (396)
T ss_pred -EEEEEeHHHCcchhccCccEEEEc--------CCceEE-EEEecCC-eEEEEEE-EECCCCCcccccCCCCHHHHHHHH
Confidence 111111 11100 0011111111 246777 7898765 1122222 222111 1 112 455555444
Q ss_pred HHhCCcccCCCCCccceEEeeeeecCCCCCCCC-CCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHH
Q 014843 184 WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 256 (417)
Q Consensus 184 ~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~-~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~ 256 (417)
-...|..+.+ ++..... -..+.+...+. +.+.+|++++||||...+|++|-|...+++.+.-|++.|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~ 321 (396)
T PRK08163 253 EGIHPRPRQM-LDKPTSW----KRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALE 321 (396)
T ss_pred cCCChHHHHH-HhcCCce----eEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHH
Confidence 3333433221 1110000 01112111121 3456899999999999999999999999999777777664
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=99.28 E-value=4.3e-10 Score=121.16 Aligned_cols=287 Identities=15% Similarity=0.187 Sum_probs=155.2
Q ss_pred cChHHHHHHHHHHH---hhcCcEEEcCceEEEEEEECC-------eEEEEecC-----------------------CcEE
Q 014843 35 REPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE-----------------------GKIL 81 (417)
Q Consensus 35 Vdr~~L~~~L~~ka---~~~Gg~i~~~t~v~~i~~~~d-------~v~V~t~~-----------------------g~~~ 81 (417)
+.+..|.+.|.+++ ...|+++++ ++++++..+++ +++++..+ ++++
T Consensus 128 ~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~ 206 (567)
T PTZ00367 128 FHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVA 206 (567)
T ss_pred eEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEE
Confidence 56788999998887 346778875 47888765543 35555433 5689
Q ss_pred EEEEEEeccCCCchhhhhhhcCCCC-C-ceeeeeeeeeec--CCCCCcceEEEecccccccCCCCCceeeeecCCCCCCC
Q 014843 82 SSHLIIDAMGNFSPVVKQIRSGRKP-D-GVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL 157 (417)
Q Consensus 82 ~ARlVIDA~G~~Spiarql~~g~~~-~-~vc~~vg~~a~G--~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~ 157 (417)
+|++||+|||.+|.+.+++....+. + ..+. ++.+... .+..+.+.+++. ..+.+| .||-+++
T Consensus 207 ~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~-~g~~~~~~~lp~~~~~~v~~g----------~~gpi~-~yPl~~~-- 272 (567)
T PTZ00367 207 TAPLVVMCDGGMSKFKSRYQHYTPASENHSHF-VGLVLKNVRLPKEQHGTVFLG----------KTGPIL-SYRLDDN-- 272 (567)
T ss_pred EeCEEEECCCcchHHHHHccCCCCCcCcceEE-EEEEEecccCCCCCeeEEEEc----------CCceEE-EEEcCCC--
Confidence 9999999999999999998643221 1 1121 2222222 222233443321 147788 7999865
Q ss_pred CceEEEEEeeCCCCCCCCHHHHHHHHHHh-----CCcc-cC-C--CCCc-cceEEeeeeecCCCCCCCCCCCCCCEEEEc
Q 014843 158 DRTTYMFTYIDPQAGSPKLEELLERYWDL-----MPEY-QG-V--TLDN-LEIQRVIYGIFPTYRDSPLPAAFNRILQFG 227 (417)
Q Consensus 158 e~ttyLf~y~~~~~~~psL~~l~e~y~~~-----LP~y-~g-~--~l~~-~~~~~~~~G~~P~~~~~p~~~~~driLlvG 227 (417)
+...++ .+.. +..|+.++. ++++.. +|+- +. . .+++ ..+. ..|.....+.+...+|++++|
T Consensus 273 ~~r~lv-~~~~--~~~p~~~~~-~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~-----~~p~~~~p~~~~~~~gvvLIG 343 (567)
T PTZ00367 273 ELRVLV-DYNK--PTLPSLEEQ-SEWLIEDVAPHLPENMRESFIRASKDTKRIR-----SMPNARYPPAFPSIKGYVGIG 343 (567)
T ss_pred eEEEEE-EecC--CcCCChHHH-HHHHHHhhcccCcHHHHHHHHHhhcccCCeE-----EeeHhhCCCccCCCCCEEEEE
Confidence 233332 2222 112333222 222211 1110 00 0 0000 0011 112222112344668999999
Q ss_pred CCCCCCCCccccchhHHHhhHHHHHHHHHHHHh--CCCCCh-hhH-hhhc----CCCccchHHHHHHhhcccccCCCCCh
Q 014843 228 DASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR--GDFVDS-YSL-SLLN----PYMPNLSASWLFQRAMSAKQQSDVSP 299 (417)
Q Consensus 228 DAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~--~~~lsa-~~L-~~l~----~Yq~nl~~~~~lqk~M~~~~~~~~~p 299 (417)
|||-..||++|.|...+++.+..|++.|..+.+ +.+++. .++ +.++ .|+. .....-
T Consensus 344 DAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~----------------~Rk~~a 407 (567)
T PTZ00367 344 DHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYAR----------------NRKTHA 407 (567)
T ss_pred cccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHH----------------HhhhhH
Confidence 999999999999999999998888888865432 223321 111 1122 3332 222234
Q ss_pred hHHHHHHHHHHHHHhhcChhhhcccccccCChhHHHHHHHHHHHhC------CCChHHHHhhcCchhhhhhhHHHHHHHH
Q 014843 300 DFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNK------PQIIPSIFKQVGIPVLVDWSGHFFMLGY 373 (417)
Q Consensus 300 ~~in~ll~~~F~~~~~Lp~~~~~~fl~d~~~~~~l~~~m~~~~~~~------P~~v~~~~~~~g~~~~~~w~~~~~~~~~ 373 (417)
..||.+-+.+...|.. ..|=+...+-+.+= |--+..++. +.-+--+.||+..++
T Consensus 408 ~~i~~ls~aL~~lf~~----------------~~lr~~~~~y~~~gg~~~~~p~~ll~g~~----~~p~~l~~h~~~v~~ 467 (567)
T PTZ00367 408 STINILSWALYSVFSS----------------PALRDACLDYFSLGGECVTGPMSLLSGLD----PSPGGLLFHYFSVAL 467 (567)
T ss_pred HHHHHHHHHHHHHhCh----------------HHHHHHHHHHHhcCCccccccHHHHcCCC----CCcHHHHHHHHHHHH
Confidence 5677777776666655 12333333333332 333333221 112234679999999
Q ss_pred HHHHHhhh
Q 014843 374 YTLLSTFA 381 (417)
Q Consensus 374 ~~~~~~~~ 381 (417)
|+....+.
T Consensus 468 ~~~~~~~~ 475 (567)
T PTZ00367 468 YGVLNLIM 475 (567)
T ss_pred HHHHHHhc
Confidence 99886554
No 45
>PRK06834 hypothetical protein; Provisional
Probab=99.27 E-value=8e-10 Score=116.78 Aligned_cols=220 Identities=17% Similarity=0.170 Sum_probs=135.1
Q ss_pred ceeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC---CC
Q 014843 30 SILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR---KP 106 (417)
Q Consensus 30 ~~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~---~~ 106 (417)
+....+.+..|.+.|.+++.+.|++++.++++++++.+++++.|++.+|++++|++||+|||..|.+.++++-.. +.
T Consensus 92 ~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~ 171 (488)
T PRK06834 92 NYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDP 171 (488)
T ss_pred CccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCc
Confidence 344457888999999999999999999999999999999999998877779999999999999999888775332 22
Q ss_pred CceeeeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCC-CCCCCceEEEEEeeCCCCC-CCCHHHHHHHHH
Q 014843 107 DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQAG-SPKLEELLERYW 184 (417)
Q Consensus 107 ~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~-dg~~e~ttyLf~y~~~~~~-~psL~~l~e~y~ 184 (417)
...+.++... +++...... .+ . ..+.+. .+|-. ++ ...+.+. ....... .++.+++.+.+.
T Consensus 172 ~~~~~~~dv~---~~~~~~~~~--~~---~-----~~g~~~-~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 234 (488)
T PRK06834 172 TTSYLIAEVE---MTEEPEWGV--HR---D-----ALGIHA-FGRLEDEG--PVRVMVT-EKQVGATGEPTLDDLREALI 234 (488)
T ss_pred ceEEEEEEEE---ecCCCCcce--ee---C-----CCceEE-EeccCCCC--eEEEEEe-cCCCCCCCCCCHHHHHHHHH
Confidence 2222221111 111000000 00 0 123332 24543 23 1222221 1111112 236777766666
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCC
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFV 264 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~l 264 (417)
+.++..-+ .....+. -.++.......+...+||+++||||-..+|+.|-|+...++.+.-|+-.|+..++. ..
T Consensus 235 ~~~g~~~~--~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g-~~ 307 (488)
T PRK06834 235 AVYGTDYG--IHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG-TS 307 (488)
T ss_pred HhhCCCCc--cccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC-CC
Confidence 55531111 1111111 12332111122456799999999999999999999999999999898888888863 33
Q ss_pred ChhhHhhhcCCC
Q 014843 265 DSYSLSLLNPYM 276 (417)
Q Consensus 265 sa~~L~~l~~Yq 276 (417)
..+.| ..|+
T Consensus 308 ~~~lL---d~Ye 316 (488)
T PRK06834 308 PESLL---DTYH 316 (488)
T ss_pred cHHHH---HHHH
Confidence 44444 5565
No 46
>PRK07538 hypothetical protein; Provisional
Probab=99.26 E-value=3.8e-10 Score=115.70 Aligned_cols=211 Identities=18% Similarity=0.167 Sum_probs=114.8
Q ss_pred ccChHHHHHHHHHHHhh-cCc-EEEcCceEEEEEEECCeEEEEecCC-----cEEEEEEEEeccCCCchhhhhhhcCCCC
Q 014843 34 FREPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSPVVKQIRSGRKP 106 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~-~Gg-~i~~~t~v~~i~~~~d~v~V~t~~g-----~~~~ARlVIDA~G~~Spiarql~~g~~~ 106 (417)
.++|..|++.|.+++.+ .|. .|+.+++|++++.++++++|...++ ++++|++||+|||.+|.+.+++.....+
T Consensus 98 ~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~ 177 (413)
T PRK07538 98 SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGP 177 (413)
T ss_pred EEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCC
Confidence 38999999999999976 475 5999999999999988877665432 4899999999999999999998644311
Q ss_pred CceeeeeeeeeecCCCC---CcceEEEecccccccCCCCCceeeeecCCCCC--C-CCceEEE-EEeeCC---C-----C
Q 014843 107 DGVCLVVGSCARGFKDN---STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--P-LDRTTYM-FTYIDP---Q-----A 171 (417)
Q Consensus 107 ~~vc~~vg~~a~G~~d~---~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg--~-~e~ttyL-f~y~~~---~-----~ 171 (417)
...+.. .+..|.... ..+..+...+. ..+.+. .||-.++ + ....... ..+... . .
T Consensus 178 ~~~~g~--~~~~~~~~~~~~~~~~~~~~~g~-------~~~~~~-~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~ 247 (413)
T PRK07538 178 PRWNGV--MMWRGVTEAPPFLTGRSMVMAGH-------LDGKLV-VYPISEPVDADGRQLINWVAEVRVDDAGAPRREDW 247 (413)
T ss_pred Ccccce--EEEEEeecCccccCCCcEEEEcC-------CCCEEE-EEECCCCcccCCceEEEEEEEEcCCccCCCccccc
Confidence 111111 011121100 00100000000 012233 3454321 0 0001111 111111 0 0
Q ss_pred CCC-CHHHHHHHHHHhCCcccCCCCCccceEE-eeeeecCCCCCCCC-CCCCCCEEEEcCCCCCCCCccccchhHHHhhH
Q 014843 172 GSP-KLEELLERYWDLMPEYQGVTLDNLEIQR-VIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRHL 248 (417)
Q Consensus 172 ~~p-sL~~l~e~y~~~LP~y~g~~l~~~~~~~-~~~G~~P~~~~~p~-~~~~driLlvGDAAglvdPlSg~GfGs~lR~l 248 (417)
..+ +.+++.+.|-...+... ++.++ +.. ...-.+|.+...+. +...+||+++||||...+|++|.|+..+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da 324 (413)
T PRK07538 248 NRPGDLEDFLPHFADWRFDWL--DVPAL-IRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDA 324 (413)
T ss_pred CCccCHHHHHHHhcCCCCCcc--cHHHH-HhcCcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHH
Confidence 122 45455433321111100 00000 000 00012466542222 34568999999999999999999999999997
Q ss_pred HHHHHHHHH
Q 014843 249 GRLSTGVYE 257 (417)
Q Consensus 249 ~rla~gI~~ 257 (417)
.-|++.|..
T Consensus 325 ~~La~~L~~ 333 (413)
T PRK07538 325 RALADALAA 333 (413)
T ss_pred HHHHHHHHh
Confidence 777777754
No 47
>PRK06847 hypothetical protein; Provisional
Probab=99.25 E-value=1.3e-09 Score=109.26 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=120.3
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcC-CCCCceeee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG-RKPDGVCLV 112 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g-~~~~~vc~~ 112 (417)
.++|..|.+.|.+++.+.|++++.++++++++..++++.|.+.+|++++|++||.|+|..|.+.+++... ..+.. +
T Consensus 103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~---~ 179 (375)
T PRK06847 103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEY---T 179 (375)
T ss_pred cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCcee---c
Confidence 4889999999999999999999999999999999999999887888999999999999999999887322 11110 0
Q ss_pred eeeeeec-CCCC-CcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC-CC--CCC-CHHHHHHHHHHh
Q 014843 113 VGSCARG-FKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QA--GSP-KLEELLERYWDL 186 (417)
Q Consensus 113 vg~~a~G-~~d~-~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~-~~--~~p-sL~~l~e~y~~~ 186 (417)
-..+..+ ++.. .......-.+ ..+.+. .+|.+++ ..+.+..... .. ..+ ++.+.+++.+..
T Consensus 180 g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (375)
T PRK06847 180 GQGVWRAVLPRPAEVDRSLMYLG--------PTTKAG-VVPLSED----LMYLFVTEPRPDNPRIEPDTLAALLRELLAP 246 (375)
T ss_pred cceEEEEEecCCCCccceEEEeC--------CCcEEE-EEcCCCC----eEEEEEeccCcccccCChHHHHHHHHHHHhh
Confidence 0011111 1110 0001111111 123444 4677643 2233322211 11 011 233444444332
Q ss_pred CCc--ccCC--CCCccceEEeeeeecCCCCC-CCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHH
Q 014843 187 MPE--YQGV--TLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 256 (417)
Q Consensus 187 LP~--y~g~--~l~~~~~~~~~~G~~P~~~~-~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~ 256 (417)
.+. .+.+ .+.+. .. . ...|.+.. .+.+...+||+++||||...+|.+|-|...+++.+.-|++.|.
T Consensus 247 ~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~ 317 (375)
T PRK06847 247 FGGPVLQELREQITDD--AQ-V-VYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELA 317 (375)
T ss_pred cCchHHHHHHHhcCCc--cc-e-eeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHh
Confidence 221 1111 01110 00 0 12233321 1234567899999999999999999999999999766666664
No 48
>PRK05868 hypothetical protein; Validated
Probab=99.25 E-value=6.7e-10 Score=112.97 Aligned_cols=206 Identities=13% Similarity=0.063 Sum_probs=115.0
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCC-C---cee
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKP-D---GVC 110 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~-~---~vc 110 (417)
+.|..|++.|.+ +...|++++.++++++++.+++++.|+..+|.+++|++||+|||.+|.+.+++.....+ . +..
T Consensus 102 i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~ 180 (372)
T PRK05868 102 LLRDDLVELLYG-ATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTH 180 (372)
T ss_pred EEHHHHHHHHHH-hccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceE
Confidence 568888887654 55678999999999999998899999888888999999999999999999987443211 1 111
Q ss_pred eeeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC--CC---CC-CHHHHHHHHH
Q 014843 111 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ--AG---SP-KLEELLERYW 184 (417)
Q Consensus 111 ~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~--~~---~p-sL~~l~e~y~ 184 (417)
..+..+-.-++. +.... +..+ .+.++. .||..++ ...+.++. +.... .. .+ +.+++.+.|.
T Consensus 181 ~~~~~~~~~~~~-~~~~~-~~~g--------~~~~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~f~ 247 (372)
T PRK05868 181 AAIFTVPNFLEL-DYWQT-WHYG--------DSTMAG-VYSARNN-TEARAALA-FMDTELRIDYRDTEAQFAELQRRMA 247 (372)
T ss_pred EEEEEcCCCCCC-CcceE-EEec--------CCcEEE-EEecCCC-CceEEEEE-EecCCcccccCChHHHHHHHHHHHh
Confidence 111111001111 11111 1111 123444 5777654 22333332 22211 11 11 2333443332
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCC-CCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHH
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 257 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p-~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~ 257 (417)
.. .+....+.+. +....--.++...+.+ .+-+.+||+++||||.-.+|++|-|.+-++..+.-||+.|..
T Consensus 248 ~~--~w~~~~l~~~-~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~ 318 (372)
T PRK05868 248 ED--GWVRAQLLHY-MRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKA 318 (372)
T ss_pred hC--CCchHHHHhh-cccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHh
Confidence 10 0000000000 0000000122100111 133468999999999999999999999999998888877743
No 49
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.22 E-value=3.2e-09 Score=115.81 Aligned_cols=275 Identities=14% Similarity=0.124 Sum_probs=169.9
Q ss_pred ccChHHHHHHHHHHHhhcCc--EEEcCceEEEEEEECC---eEEEEec------CC--cEEEEEEEEeccCCCchhhhhh
Q 014843 34 FREPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA------EG--KILSSHLIIDAMGNFSPVVKQI 100 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg--~i~~~t~v~~i~~~~d---~v~V~t~------~g--~~~~ARlVIDA~G~~Spiarql 100 (417)
++.+.++.+.|.+.+.+.|+ ++..++++++++.+++ .|+|+.. +| ++++|++||+|||.+|.+-+++
T Consensus 137 ~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 137 IVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred eeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 48899999999999988775 6788999999988753 3777653 34 5899999999999999999998
Q ss_pred hcCC---CCCceeeeeeeee-ecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC---CC--
Q 014843 101 RSGR---KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP---QA-- 171 (417)
Q Consensus 101 ~~g~---~~~~vc~~vg~~a-~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~---~~-- 171 (417)
+... ..++.|.++-... ..+++....-.+.+ .+ .+..+| +|..++ .....|.. +... ..
T Consensus 217 gi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~----~~----~g~~~~--~P~~~g-~~~r~~~~-~~~~~~~~~~~ 284 (634)
T PRK08294 217 GRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS----AS----EGSILL--IPREGG-YLVRLYVD-LGEVPPDERVA 284 (634)
T ss_pred CCCccCCcccceEEEEEEEEccCCCCcceEEEEec----CC----CceEEE--EECCCC-eEEEEEEe-cCcCCCccccc
Confidence 5542 2334444333222 23332211111111 11 233444 788754 11222221 1111 11
Q ss_pred CCC-CHHHHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCC-----CCC-----CCCCCEEEEcCCCCCCCCccccc
Q 014843 172 GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-----PLP-----AAFNRILQFGDASGIQSPVSFGG 240 (417)
Q Consensus 172 ~~p-sL~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~-----p~~-----~~~driLlvGDAAglvdPlSg~G 240 (417)
..+ +.+++.+.+.+.++.|.. +++++.+. ..++..... ..+ ...+||+++||||-..+|..|-|
T Consensus 285 ~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w~----s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQG 359 (634)
T PRK08294 285 VRNTTVEEVIAKAQRILHPYTL-DVKEVAWW----SVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQG 359 (634)
T ss_pred cccCCHHHHHHHHHHhcCCCCC-ceeEEeEE----ecccccceehhhcccccccccccccCCEEEEecCccCCCCccccc
Confidence 122 788888877766654432 12222221 222221100 000 12479999999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHHHhCCCCChhhHhhhcCCC--------ccchHHHHHHhhcccccCC--CCChhHHHHHHHHHH
Q 014843 241 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM--------PNLSASWLFQRAMSAKQQS--DVSPDFINELLYVNF 310 (417)
Q Consensus 241 fGs~lR~l~rla~gI~~AL~~~~lsa~~L~~l~~Yq--------~nl~~~~~lqk~M~~~~~~--~~~p~~in~ll~~~F 310 (417)
....+..+.-|+..|+..++ +...++.| ..|+ .-+..+..+.++|+-++.. ..+++.+++.+....
T Consensus 360 mN~giqDA~nLawkLa~vl~-g~a~~~lL---~tYe~ERrp~a~~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 435 (634)
T PRK08294 360 MNVSMQDGFNLGWKLAAVLS-GRSPPELL---HTYSAERQAIAQELIDFDREWSTMMAAPPKEGGGVDPAELQDYFVKHG 435 (634)
T ss_pred hhhHHHHHHHHHHHHHHHHc-CCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCHHHHHHHHHHhh
Confidence 99999999999999988875 34445545 4444 4556666678888766542 345666666665556
Q ss_pred HHHhhcChhhhcccccccC
Q 014843 311 QCMQKLGDPVLRPFLQDVI 329 (417)
Q Consensus 311 ~~~~~Lp~~~~~~fl~d~~ 329 (417)
.-+..++-+|-..-|....
T Consensus 436 ~~~sG~~~~Y~~s~l~~~~ 454 (634)
T PRK08294 436 RFTAGTATHYAPSLLTGEA 454 (634)
T ss_pred hhhcccCcccCCccccCCC
Confidence 6777788888777776543
No 50
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.21 E-value=1.6e-09 Score=115.32 Aligned_cols=219 Identities=16% Similarity=0.117 Sum_probs=129.8
Q ss_pred cChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEEEEec--CCc-EEEEEEEEeccCCCchhhhhhhcCCCC---C
Q 014843 35 REPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIIDAMGNFSPVVKQIRSGRKP---D 107 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~V~t~--~g~-~~~ARlVIDA~G~~Spiarql~~g~~~---~ 107 (417)
+.+..|.++|.+++.+. |+++..++++++++.++++++++.. +|. +++|++||+|||.+|.+.++++..... .
T Consensus 122 ~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~ 201 (547)
T PRK08132 122 LQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFE 201 (547)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCcccc
Confidence 78889999999999874 6799999999999999999887643 343 799999999999999998887554221 1
Q ss_pred ceeeeeeeeee-cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeC-CCCC-CCCHHHHHHHHH
Q 014843 108 GVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID-PQAG-SPKLEELLERYW 184 (417)
Q Consensus 108 ~vc~~vg~~a~-G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~-~~~~-~psL~~l~e~y~ 184 (417)
..+.++..... .+++ ..-..+.. +.. ..+++| .+|..++ ..... +.... .... ..+.+++.+...
T Consensus 202 ~~~~~~d~~~~~~~~~--~~~~~~~~-~~~-----~~~~~~-~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 269 (547)
T PRK08132 202 DRFLIADVKMKADFPT--ERWFWFDP-PFH-----PGQSVL-LHRQPDN--VWRID-FQLGWDADPEAEKKPENVIPRVR 269 (547)
T ss_pred ceEEEEEEEecCCCCC--eeeEEEec-cCC-----CCcEEE-EEeCCCC--eEEEE-EecCCCCCchhhcCHHHHHHHHH
Confidence 11222111111 1111 11111221 122 245677 5666543 12211 11111 1111 113444444443
Q ss_pred HhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCC
Q 014843 185 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFV 264 (417)
Q Consensus 185 ~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~l 264 (417)
+.++.. .+.++.. ...++.....-.+...+||+++||||-..+|+.|-|....++.+.-|+..|+..++. ..
T Consensus 270 ~~~~~~-----~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~ 341 (547)
T PRK08132 270 ALLGED-----VPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG-RA 341 (547)
T ss_pred HHcCCC-----CCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC-CC
Confidence 344311 1111111 012222111112345689999999999999999999999999999999999887754 44
Q ss_pred ChhhHhhhcCCC
Q 014843 265 DSYSLSLLNPYM 276 (417)
Q Consensus 265 sa~~L~~l~~Yq 276 (417)
+++.| ..|+
T Consensus 342 ~~~lL---~~Ye 350 (547)
T PRK08132 342 PDSLL---DSYA 350 (547)
T ss_pred cHHHH---HHHH
Confidence 45545 5555
No 51
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.20 E-value=7.3e-10 Score=113.11 Aligned_cols=206 Identities=14% Similarity=0.113 Sum_probs=119.4
Q ss_pred ccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEec---CCcEEEEEEEEeccCCCchhhhhhhcCCCC-Cc
Q 014843 34 FREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFSPVVKQIRSGRKP-DG 108 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~---~g~~~~ARlVIDA~G~~Spiarql~~g~~~-~~ 108 (417)
.+.|..|++.|.+++.+ .|++++.++++++++.+++++.|+.. ++++++|++||+|||.+|.+-+++....+. .+
T Consensus 103 ~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~~~~~~g 182 (400)
T PRK06475 103 VCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFSG 182 (400)
T ss_pred eECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCCCCCcCC
Confidence 48999999999999976 57899999999999999898887752 345799999999999999999987442211 12
Q ss_pred eeeeeeee-eecCCCC------CcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC-C---CCC-CH
Q 014843 109 VCLVVGSC-ARGFKDN------STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-A---GSP-KL 176 (417)
Q Consensus 109 vc~~vg~~-a~G~~d~------~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~-~---~~p-sL 176 (417)
.+...+.+ .+.++.. +.+.+..-+++ .+.+. .||-+++ +.-.++....... + ..+ +.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~~~-~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 251 (400)
T PRK06475 183 HIAWRTTLAADALPASFLSAMPEHKAVSAWLGN--------KAHFI-AYPVKGG--KFFNFVAITGGENPGEVWSKTGDK 251 (400)
T ss_pred ceEEEEEeehhhcchhhhhhcccCCceEEEEcC--------CCEEE-EEEccCC--cEEEEEEEEcCCCCcccCCCCCCH
Confidence 22111111 1112110 01111111111 23444 5788764 1222221111111 1 112 33
Q ss_pred HHHHHHHHHhCCc-ccCCCCCccceEEeeeeecCCCCCCCCCC-CCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHH
Q 014843 177 EELLERYWDLMPE-YQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 254 (417)
Q Consensus 177 ~~l~e~y~~~LP~-y~g~~l~~~~~~~~~~G~~P~~~~~p~~~-~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~g 254 (417)
+.++++++..+. .++. ++... .. ..+|.+...+.+. ..+|++++||||--.+|.+|-|...+++.+.-|++.
T Consensus 252 -~~l~~~~~~~~~~~~~~-i~~~~---~~-~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~ 325 (400)
T PRK06475 252 -AHLKSIYADWNKPVLQI-LAAID---EW-TYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEA 325 (400)
T ss_pred -HHHHHHhcCCChHHHHH-HhcCC---ce-eECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHH
Confidence 333334432211 1111 11111 11 2345554322232 358999999999999999999999999997777766
Q ss_pred HH
Q 014843 255 VY 256 (417)
Q Consensus 255 I~ 256 (417)
|.
T Consensus 326 L~ 327 (400)
T PRK06475 326 LD 327 (400)
T ss_pred Hh
Confidence 63
No 52
>PLN02985 squalene monooxygenase
Probab=99.19 E-value=6e-10 Score=118.64 Aligned_cols=297 Identities=12% Similarity=0.125 Sum_probs=150.6
Q ss_pred eeccChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCe---EEEEecCCc--EEEEEEEEeccCCCchhhhhhhcCCC
Q 014843 32 LEFREPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSSHLIIDAMGNFSPVVKQIRSGRK 105 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~---v~V~t~~g~--~~~ARlVIDA~G~~Spiarql~~g~~ 105 (417)
...+.|..|++.|.+++.+. |+++.+ ++++++..+++. +++.+.+|+ +++|++||+|||.+|.+.+++....+
T Consensus 141 g~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~ 219 (514)
T PLN02985 141 ARSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNA 219 (514)
T ss_pred eeeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCC
Confidence 34689999999999999886 456665 467777665543 333334564 46799999999999999999865433
Q ss_pred CCceeeeeeeeee--cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCH-HHHHHH
Q 014843 106 PDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKL-EELLER 182 (417)
Q Consensus 106 ~~~vc~~vg~~a~--G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL-~~l~e~ 182 (417)
+..-+. ++.... ..++.+.+.+++. .++.++ .||-+++ + +..+..+...+ -|++ ..-+++
T Consensus 220 ~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~--~-~~~~~~~~~~~--~~~~~~~~~~~ 282 (514)
T PLN02985 220 EVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISST--D-VRCVFEVLPDN--IPSIANGEMST 282 (514)
T ss_pred cceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCC--e-EEEEEEEeCCC--CCCcChhhHHH
Confidence 211111 111111 1112222333221 134555 6787754 2 22222222211 1111 011222
Q ss_pred HHHhC--CcccCCCCCcc---ceEE-eeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHH
Q 014843 183 YWDLM--PEYQGVTLDNL---EIQR-VIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 256 (417)
Q Consensus 183 y~~~L--P~y~g~~l~~~---~~~~-~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~ 256 (417)
|++.. |.... .+.+. .+.. ...-..|.+.........+|++++||||-..+|++|.|..-++..+.-|++.|.
T Consensus 283 ~~~~~~~p~~p~-~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~ 361 (514)
T PLN02985 283 FVKNTIAPQVPP-KLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQ 361 (514)
T ss_pred HHHhccccccCH-HHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhh
Confidence 32211 10000 00000 0000 001123443322223345789999999999999999999999999777777775
Q ss_pred HHHhCCCC-ChhhH-hhhcCCCccchHHHHHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhhcccccccCChhHH
Q 014843 257 EAVRGDFV-DSYSL-SLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPL 334 (417)
Q Consensus 257 ~AL~~~~l-sa~~L-~~l~~Yq~nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~fl~d~~~~~~l 334 (417)
.. +++ +..++ +.++.|+. .....-+.||.+=......|..-+++.++. |
T Consensus 362 ~~---~~~~~~~~~~~aL~~y~~----------------~Rk~r~~~i~~la~al~~~f~a~~~~~~~~----------l 412 (514)
T PLN02985 362 PL---SNLGNANKVSEVIKSFYD----------------IRKPMSATVNTLGNAFSQVLVASTDEAKEA----------M 412 (514)
T ss_pred hc---ccccchhHHHHHHHHHHH----------------HhhcchhHHHHHHHHHHHHHHhCCHHHHHH----------H
Confidence 42 122 21121 12344443 122233567777777777765545553332 2
Q ss_pred HHHHHHHHHhC------CCChHHHHhhcCchhhhhhhHHHHHHHHHHHHHhh
Q 014843 335 AKTLGLVMLNK------PQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTF 380 (417)
Q Consensus 335 ~~~m~~~~~~~------P~~v~~~~~~~g~~~~~~w~~~~~~~~~~~~~~~~ 380 (417)
-+--.+-+.+= |--+..++. ..+ +-=+.||+..++|+....+
T Consensus 413 ~~~~f~y~~~g~~~~~~~~~ll~~~~---~~p-~~l~~h~~~v~~~~~~~~~ 460 (514)
T PLN02985 413 RQGCYDYLCSGGFRTSGMMALLGGMN---PRP-LSLIYHLCAITLSSIGHLL 460 (514)
T ss_pred HHHHHHHHHcCCccccccHHHHcCCC---CCc-HHHHHHHHHHHHHHHHHHh
Confidence 22222222222 222222111 111 2235699999999877544
No 53
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.16 E-value=2e-09 Score=109.98 Aligned_cols=240 Identities=13% Similarity=0.078 Sum_probs=125.0
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEE-ECCeEEEEec-CCc--EEEEEEEEeccCCCchhhhhhhcCCCC--Cce
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKP--DGV 109 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~-~~d~v~V~t~-~g~--~~~ARlVIDA~G~~Spiarql~~g~~~--~~v 109 (417)
.+..|+..|.+++.+.|++++.+++++.+.. +++.+.|+.. +|+ +++|++||+|||.+|.+.+++.....+ .+.
T Consensus 101 ~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~ 180 (390)
T TIGR02360 101 GQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERV 180 (390)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeecc
Confidence 4668888899999888999999988888754 5666677664 664 799999999999999999987443211 111
Q ss_pred ee--eeeeeeecCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC-CCCCCHHHHHHHHHHh
Q 014843 110 CL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-AGSPKLEELLERYWDL 186 (417)
Q Consensus 110 c~--~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~-~~~psL~~l~e~y~~~ 186 (417)
.. ..+.... .+. ...++++.. .++++.+ +|..++ .....++. +.... ....+-+.+.+++.++
T Consensus 181 ~~~~~~~l~~~-~~~-~~~~~~~~~--------~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 246 (390)
T TIGR02360 181 YPFGWLGILSE-TPP-VSHELIYSN--------HERGFAL--CSMRSA-TRSRYYVQ-VPLTDKVEDWSDDRFWAELKRR 246 (390)
T ss_pred CCcceEEEecC-CCC-CCCceEEEe--------CCCceEE--EeccCC-CcceEEEE-cCCCCChhhCChhHHHHHHHHh
Confidence 10 0010100 000 011111110 1234444 243322 01112221 11111 1111222333333333
Q ss_pred CCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCCh
Q 014843 187 MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDS 266 (417)
Q Consensus 187 LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~lsa 266 (417)
++..-...+...... .....|.......+...+|++++||||..++|+.|-|+..+++.+.-|++.|.++..++ .+
T Consensus 247 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~--~~ 322 (390)
T TIGR02360 247 LPSEAAERLVTGPSI--EKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEG--SS 322 (390)
T ss_pred cCchhhhhhccCCcc--ceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccC--hH
Confidence 321100000000000 01122221111224667999999999999999999999999999888988887665432 23
Q ss_pred hhHhhh-----cCCCccchHHHHHHhhccccc
Q 014843 267 YSLSLL-----NPYMPNLSASWLFQRAMSAKQ 293 (417)
Q Consensus 267 ~~L~~l-----~~Yq~nl~~~~~lqk~M~~~~ 293 (417)
++|+.+ ...+..+..++.+.+.+.-.+
T Consensus 323 ~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~ 354 (390)
T TIGR02360 323 AGIEGYSARALARVWKAERFSWWMTSLLHRFP 354 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344321 122333445555555544333
No 54
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.09 E-value=8.5e-09 Score=105.65 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=118.8
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcC--C---CC--
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG--R---KP-- 106 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g--~---~~-- 106 (417)
.+.|..|.+.|.+.+.+ ..+..+++|++++.++++|+|...+|.+++|.+||.|||+.|.+.+++..+ . ++
T Consensus 101 ~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~ 178 (414)
T TIGR03219 101 SVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRF 178 (414)
T ss_pred cCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccc
Confidence 48899999999987744 467889999999999999999887888999999999999999988887432 1 11
Q ss_pred Cceeeeeeeee-ecCCC--------CCcce-EEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC------
Q 014843 107 DGVCLVVGSCA-RGFKD--------NSTSD-VIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ------ 170 (417)
Q Consensus 107 ~~vc~~vg~~a-~G~~d--------~~~ge-i~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~------ 170 (417)
.+.+..-+.+- ..+.. ....+ ..... . .+++++ .||..++ ..++...+......
T Consensus 179 ~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~g-~~~~~~~~~~~~~~~~~~~~ 248 (414)
T TIGR03219 179 SGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYL---G-----LDGHIL-TFPVRQG-RLINVVAFISDRSQPKPTWP 248 (414)
T ss_pred cCcEEEEEEeeHHHHhhhhccccccccccccceEEE---c-----CCCeEE-EEECCCC-cEEEEEEEEcCcccccCCCC
Confidence 11111111110 00100 00000 00001 1 245666 6898876 22333333211100
Q ss_pred ---C-CCC-CHHHHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCC-CCCCCCCEEEEcCCCCCCCCccccchhHH
Q 014843 171 ---A-GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSL 244 (417)
Q Consensus 171 ---~-~~p-sL~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p-~~~~~driLlvGDAAglvdPlSg~GfGs~ 244 (417)
+ ... ..+++.+.|-..-|..+.+ ++.. ... -..+.+...+ .+.+.+||+++||||-...|.+|-|...+
T Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~--~~~--~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~A 323 (414)
T TIGR03219 249 SDTPWVREATQREMLDAFAGWGDAARAL-LECI--PAP--TLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQG 323 (414)
T ss_pred CCCcccCccCHHHHHHHhcCCCHHHHHH-HHhC--CCC--CceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhH
Confidence 0 011 3444444431111111111 0000 000 0011111111 13446899999999999999999999999
Q ss_pred HhhHHHHHHHHHHHH
Q 014843 245 TRHLGRLSTGVYEAV 259 (417)
Q Consensus 245 lR~l~rla~gI~~AL 259 (417)
+..+.-|++.|..+.
T Consensus 324 ieDA~~La~~L~~~~ 338 (414)
T TIGR03219 324 LEDAYFLARLLGDTE 338 (414)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999888888776554
No 55
>PRK06126 hypothetical protein; Provisional
Probab=99.03 E-value=2.8e-08 Score=105.68 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=122.9
Q ss_pred eccChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEec---CCc--EEEEEEEEeccCCCchhhhhhhcCCCC
Q 014843 33 EFREPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKP 106 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~---~g~--~~~ARlVIDA~G~~Spiarql~~g~~~ 106 (417)
..+++..|...|.+.+.+ .|++|+.++++++++.++++++|+.. +|+ +++|++||+|||..|.+.++++.....
T Consensus 121 ~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g 200 (545)
T PRK06126 121 HRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEG 200 (545)
T ss_pred ccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCcccc
Confidence 458999999999999986 57899999999999999998887653 353 799999999999999998887543211
Q ss_pred Ccee-eeeeee--eecCC---CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEE-eeCCC-CCCCCHHH
Q 014843 107 DGVC-LVVGSC--ARGFK---DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT-YIDPQ-AGSPKLEE 178 (417)
Q Consensus 107 ~~vc-~~vg~~--a~G~~---d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~-y~~~~-~~~psL~~ 178 (417)
.... ..+... +.++. .......++...| +.... .+|..++ .++.++ +.... ....+-++
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p--------~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 267 (545)
T PRK06126 201 TSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNP--------DRRGV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVD 267 (545)
T ss_pred CCCcceEEEEEEEcCchHHHhcCCCceEEEEECC--------CccEE-EEEECCC----CeEEEEEecCCCCCCCCCHHH
Confidence 1000 000000 00110 0001111111111 01111 1232211 122222 22111 11113333
Q ss_pred HHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHH
Q 014843 179 LLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA 258 (417)
Q Consensus 179 l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~A 258 (417)
..+.+.+.++ ..+ ..++... ...+.......+...+||+++||||-..+|+.|.|....+..+.-|+..|+..
T Consensus 268 ~~~~~~~~~~--~~~---~~~i~~~--~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~ 340 (545)
T PRK06126 268 ARAFVRRGVG--EDI---DYEVLSV--VPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAV 340 (545)
T ss_pred HHHHHHHhcC--CCC---CeEEEee--cccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHH
Confidence 4333333332 111 1112211 11111111112455799999999999999999999999999999999999877
Q ss_pred HhCCCCChhhHhhhcCCC
Q 014843 259 VRGDFVDSYSLSLLNPYM 276 (417)
Q Consensus 259 L~~~~lsa~~L~~l~~Yq 276 (417)
++. .-.++. ++.|+
T Consensus 341 ~~~-~~~~~l---L~~Y~ 354 (545)
T PRK06126 341 LNG-WAGPAL---LDSYE 354 (545)
T ss_pred HcC-CCcHHH---HhhhH
Confidence 743 223333 45555
No 56
>PRK07236 hypothetical protein; Provisional
Probab=98.98 E-value=2.3e-08 Score=101.52 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=57.4
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRS 102 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~ 102 (417)
+.+..|.+.|.+.+ .+.+++.+++|++++.++++|+|...+|++++|++||+|||.+|.+.+++..
T Consensus 97 ~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~ 162 (386)
T PRK07236 97 TSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLP 162 (386)
T ss_pred cCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCC
Confidence 57788888887754 3458999999999999999999988888899999999999999999999843
No 57
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.75 E-value=4.8e-07 Score=89.56 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=141.3
Q ss_pred EEEEEeccCCCchhhhhhhcCCCCCceeeeeeeeee--cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCce
Q 014843 83 SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 160 (417)
Q Consensus 83 ARlVIDA~G~~Spiarql~~g~~~~~vc~~vg~~a~--G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~t 160 (417)
|.++|-|||..|.+-|++. ..++.-.+--+|-+.. ..+...+|+++... .+.++ .|+-+.. -+
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---et 66 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---ET 66 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---ce
Confidence 7899999999999999987 3344433334444443 22344578887655 36677 7988754 34
Q ss_pred EEEEEeeCCCCCCC-----CHHHHHHHHHH-hCCcccCCC----CCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCC
Q 014843 161 TYMFTYIDPQAGSP-----KLEELLERYWD-LMPEYQGVT----LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDAS 230 (417)
Q Consensus 161 tyLf~y~~~~~~~p-----sL~~l~e~y~~-~LP~y~g~~----l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAA 230 (417)
--|..+... +-| ++++.+++... .+|+.=... +++-++ -..|...-.+.+...++++++|||+
T Consensus 67 R~Lvdvp~~--k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri-----rsMPn~~lp~~~~~~~G~vllGDA~ 139 (276)
T PF08491_consen 67 RVLVDVPGP--KLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRI-----RSMPNSFLPASPNWKPGVVLLGDAA 139 (276)
T ss_pred EEEEEeCCC--ccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc-----ceecccccCCCCCCCCCEEEEehhh
Confidence 455444432 122 33333332222 454321111 112111 2345444233455568999999999
Q ss_pred CCCCCccccchhHHHhhHHHHHHHHHHHHhCCCCChh-hH-hhhcCCCccchHHHHHHhhcccccCCCCChhHHHHHHHH
Q 014843 231 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY-SL-SLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYV 308 (417)
Q Consensus 231 glvdPlSg~GfGs~lR~l~rla~gI~~AL~~~~lsa~-~L-~~l~~Yq~nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~ 308 (417)
.+-||+||+|+.-++..+-.+++.|... .+++.. ++ +.++.|.- .++-.---||-|-+.
T Consensus 140 nmrHPLTGgGMTVAl~Dv~lL~~lL~~~---~dl~d~~~v~~~l~~f~~----------------~Rk~~~s~iNiLA~a 200 (276)
T PF08491_consen 140 NMRHPLTGGGMTVALNDVVLLRDLLSPI---PDLSDTKAVLEALKKFHW----------------KRKPLSSVINILAQA 200 (276)
T ss_pred cCcCCccccchhhHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHH----------------HHccchHHHHHHHHH
Confidence 9999999999999999988888877666 344322 22 11222111 111122267777777
Q ss_pred HHHHHhhcChhhhcccccccCChhHHHHHHHHHHHhCCCChHHHHhhcC-c-hhhhhhhHHHHHHHHHHHHHhhh
Q 014843 309 NFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVG-I-PVLVDWSGHFFMLGYYTLLSTFA 381 (417)
Q Consensus 309 ~F~~~~~Lp~~~~~~fl~d~~~~~~l~~~m~~~~~~~P~~v~~~~~~~g-~-~~~~~w~~~~~~~~~~~~~~~~~ 381 (417)
.+.+|.+-.+. +..|-+-..+-+.+-+..+...+..++ + +.-+--+.||+..++|+....+.
T Consensus 201 LY~lF~a~~~~-----------l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L~~Hff~Va~~~i~~~~~ 264 (276)
T PF08491_consen 201 LYSLFAADDDY-----------LKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVLFYHFFAVAFYAIYLNLK 264 (276)
T ss_pred HHHHHhCCCHH-----------HHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHHHHHHHHHHHHHHHHHcc
Confidence 77777654332 233444455555555544443333332 1 11223456999999999987654
No 58
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.65 E-value=1.4e-06 Score=95.69 Aligned_cols=209 Identities=19% Similarity=0.200 Sum_probs=117.2
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCCceee
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCL 111 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~~vc~ 111 (417)
...|.|..|++.|.+.+.. ..++.+++|++++..+++|+|.+.+|++++|++||+|||..|.+.+++-...++. .+.
T Consensus 188 ~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~-~sG 264 (668)
T PLN02927 188 TRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEAT-YSG 264 (668)
T ss_pred EEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCc-ccc
Confidence 4468999999999765422 2467888999999999999999888889999999999999999999874332222 111
Q ss_pred eeeeeeecCCCC------CcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCC--CCCC-CHHHHHHH
Q 014843 112 VVGSCARGFKDN------STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ--AGSP-KLEELLER 182 (417)
Q Consensus 112 ~vg~~a~G~~d~------~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~--~~~p-sL~~l~e~ 182 (417)
. ++..|+.+. ..+...+ .+ .++++= .+|..++ ....+.|. .+.. ...+ ..++.+.+
T Consensus 265 ~--~~~rgi~~~~p~~~~~~~~~~~-~G--------~~~~~v-~~~v~~g--~~~~~~f~-~~p~~~~~~~~~~~e~L~~ 329 (668)
T PLN02927 265 Y--TCYTGIADFIPADIESVGYRVF-LG--------HKQYFV-SSDVGGG--KMQWYAFH-EEPAGGADAPNGMKKRLFE 329 (668)
T ss_pred e--EEEEEEcCCCcccccccceEEE-Ec--------CCeEEE-EEcCCCC--eEEEEEEE-ECCccccccchhHHHHHHH
Confidence 0 111122111 0111111 00 123332 2354433 12222221 1110 0111 12222222
Q ss_pred HHHhC-CcccCCCCCccceEEeeeeecCCCCCCC-CCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHHHHh
Q 014843 183 YWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 260 (417)
Q Consensus 183 y~~~L-P~y~g~~l~~~~~~~~~~G~~P~~~~~p-~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~AL~ 260 (417)
.++.. |..+.+ ++..... .....+.|...+ .+-+.+||+++||||--.+|..|-|..-++..+.-||..|..+++
T Consensus 330 ~f~~w~~~v~el-I~~t~~~--~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~ 406 (668)
T PLN02927 330 IFDGWCDNVLDL-LHATEED--AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWK 406 (668)
T ss_pred HhccCCHHHHHH-HHhCccc--cceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhc
Confidence 22211 222211 0000000 001112222112 123458999999999999999999999999999999999988875
Q ss_pred C
Q 014843 261 G 261 (417)
Q Consensus 261 ~ 261 (417)
.
T Consensus 407 ~ 407 (668)
T PLN02927 407 Q 407 (668)
T ss_pred c
Confidence 4
No 59
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.24 E-value=8.3e-06 Score=84.43 Aligned_cols=209 Identities=16% Similarity=0.134 Sum_probs=117.7
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcC------ceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcC-CCCC
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEG------YSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG-RKPD 107 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~------t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g-~~~~ 107 (417)
+.+..|++-++..|+.. ..|+.. +....++......+|++.+|.++++.++|+|||+.|.|.+++... ++.+
T Consensus 99 ~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~ 177 (420)
T KOG2614|consen 99 INRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYD 177 (420)
T ss_pred HHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcce
Confidence 45667777777777775 345544 366667777777888988899999999999999999999999877 4444
Q ss_pred ceeeeeeeeeecCCCCCc-ceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC-CC------CCC-----
Q 014843 108 GVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QA------GSP----- 174 (417)
Q Consensus 108 ~vc~~vg~~a~G~~d~~~-gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~-~~------~~p----- 174 (417)
+.|..-|-...+. +... ..+. .+.. ++=|+| |.+.. .++.+...+.. ++ ..|
T Consensus 178 ~~~ayrg~~~~~~-~~~~~~~vf----~~~~----~~~~~~---~~~~~---~~~~y~~~~k~~t~t~~~~~~e~~~l~~ 242 (420)
T KOG2614|consen 178 GSQAYRGLGFIPN-GIPFGKKVF----AIYG----NGLHSW---PRPGF---HLIAYWFLDKSLTSTDFAPFDEPEKLKK 242 (420)
T ss_pred eEEEEeeeeeccC-CCCccccee----cccC----CeEEEc---ccCCc---eEEEEEeecCCcccccccCcCCHHHHhh
Confidence 4443222211111 1111 1111 1111 122334 44322 22222222210 10 111
Q ss_pred CHHHHHHHHHHhCCcccC-CCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHHHH
Q 014843 175 KLEELLERYWDLMPEYQG-VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST 253 (417)
Q Consensus 175 sL~~l~e~y~~~LP~y~g-~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rla~ 253 (417)
...++.+.+.+.+|+-=. ++.+.+ .+--+-.-|.|...--+...++++++||||--.=|+-|-|--.++..+--||+
T Consensus 243 ~~~~v~~~~~en~~d~i~~~~~e~i--~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~ 320 (420)
T KOG2614|consen 243 TSLEVVDFFPENFPDIIELTGEESI--VRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAE 320 (420)
T ss_pred hHHHHHHHhHHhHHHHHHhcChHHh--hhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHH
Confidence 223444444333332211 122222 22111223444211113334599999999999999999999999999888999
Q ss_pred HHHHHHhC
Q 014843 254 GVYEAVRG 261 (417)
Q Consensus 254 gI~~AL~~ 261 (417)
-+++|.++
T Consensus 321 ~L~~~~~d 328 (420)
T KOG2614|consen 321 CLDEAIND 328 (420)
T ss_pred HHHHhccc
Confidence 99998874
No 60
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.24 E-value=3e-05 Score=75.61 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=56.3
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEeccCCCchhhh
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK 98 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~G~~Spiar 98 (417)
-.+|+.+|.+.|.+.+++.|++++.+++|+++..++++|+ |+|.+|+ ++|+.||.|.|..++-..
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~ 207 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLL 207 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHH
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeee
Confidence 3479999999999999999999999999999999999998 9998776 999999999999876643
No 61
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.24 E-value=8.6e-06 Score=90.92 Aligned_cols=198 Identities=14% Similarity=0.074 Sum_probs=107.3
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhcCCCCC-ceeee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD-GVCLV 112 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~~~~-~vc~~ 112 (417)
.++|..|++.|.+++.+.|++++.+++++++... ..++.+||+|||.+|.+.+++.....++ .....
T Consensus 93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~ 160 (765)
T PRK08255 93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRC 160 (765)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCC
Confidence 4899999999999999999999999988765321 2478999999999999988764321111 00000
Q ss_pred eeeeeecCCCCCcceEEEecccccccCCCCCceeee-ecCCCCCCCCceEEEEEeeCCC----C-C--CC-CHHHHHHHH
Q 014843 113 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDPQ----A-G--SP-KLEELLERY 183 (417)
Q Consensus 113 vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~We-~FP~~dg~~e~ttyLf~y~~~~----~-~--~p-sL~~l~e~y 183 (417)
....-|.... ...+-+.+.+.. .+.+|. .||-.++ .+++++...+.+ . . .+ ..++.+++.
T Consensus 161 -~~~w~g~~~~-~~~~~~~~~~~~------~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (765)
T PRK08255 161 -RFVWLGTHKV-FDAFTFAFEETE------HGWFQAHAYRFDDD---TSTFIVETPEEVWRAAGLDEMSQEESIAFCEKL 229 (765)
T ss_pred -ceEEecCCCc-ccceeEEEEecC------CceEEEEEeeeCCC---CcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHH
Confidence 0001122110 111111111111 345441 3677654 445555443211 0 0 11 122222333
Q ss_pred HH-hCCcccCCCCCccce-EEeeeeecCCCCCCCCCCCCCC----EEEEcCCCCCCCCccccchhHHHhhHHHHHHHHHH
Q 014843 184 WD-LMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 257 (417)
Q Consensus 184 ~~-~LP~y~g~~l~~~~~-~~~~~G~~P~~~~~p~~~~~dr----iLlvGDAAglvdPlSg~GfGs~lR~l~rla~gI~~ 257 (417)
++ ..|..+-+ .+... ....+..++.- ...+-+..| ++++||||-..+|..|-|.+.+++.+..|++.|..
T Consensus 230 f~~~~~~~~li--~~~~~~~~~~w~~~~~~--~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~ 305 (765)
T PRK08255 230 FADYLDGHPLM--SNASHLRGSAWINFPRV--VCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHE 305 (765)
T ss_pred hHHhcCCCccc--ccccccccceeeeccee--ccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 22 23322111 11100 00001222211 011334456 99999999999999999999999998888888865
Q ss_pred H
Q 014843 258 A 258 (417)
Q Consensus 258 A 258 (417)
+
T Consensus 306 ~ 306 (765)
T PRK08255 306 H 306 (765)
T ss_pred c
Confidence 3
No 62
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.11 E-value=0.00013 Score=71.49 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=55.6
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEeccCCCchhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
.||+.+|...|.+.|.+.|++++.+++|++++.++++|. |.|.+| +++|+.||-|.|..++-.
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhc
Confidence 489999999999999999999999999999999888764 677555 899999999999887654
No 63
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.92 E-value=0.0003 Score=72.82 Aligned_cols=289 Identities=18% Similarity=0.228 Sum_probs=159.8
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EE--ecCCc--EEEEEEEEeccCCCchhhhhhhcCCCCCce
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL--LAEGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDGV 109 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~--t~~g~--~~~ARlVIDA~G~~Spiarql~~g~~~~~v 109 (417)
+-.-+|.+.|+++|...-..-+++.+|+++-.+++.+. |+ +++|+ ++.|-|-|-|||.+|-+-|-+....-
T Consensus 144 FhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v---- 219 (509)
T KOG1298|consen 144 FHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKV---- 219 (509)
T ss_pred eeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcc----
Confidence 55678999999999886677788888888877766222 33 33343 78999999999999999997765321
Q ss_pred eeeeeeeeecCC-------CCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCC-CHHHHHH
Q 014843 110 CLVVGSCARGFK-------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP-KLEELLE 181 (417)
Q Consensus 110 c~~vg~~a~G~~-------d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~p-sL~~l~e 181 (417)
+ +|.++.-|+. ....|.++++.+. .+- .||-+.. -+--+..+.. .+-| ....-+.
T Consensus 220 ~-~V~S~fVG~vl~N~~l~~p~hghvIL~~ps----------pil-~Y~ISSt---EvRcl~~v~g--~~~Psi~~gem~ 282 (509)
T KOG1298|consen 220 E-EVPSYFVGLVLKNCRLPAPNHGHVILSKPS----------PIL-VYQISST---EVRCLVDVPG--QKLPSIANGEMA 282 (509)
T ss_pred c-ccchheeeeeecCCCCCCCCcceEEecCCC----------cEE-EEEecch---heEEEEecCc--ccCCcccchhHH
Confidence 1 2333333443 3457888877532 222 5666542 2223333321 1112 1111122
Q ss_pred HHHHh-----CCcc------cCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHH
Q 014843 182 RYWDL-----MPEY------QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 250 (417)
Q Consensus 182 ~y~~~-----LP~y------~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~r 250 (417)
+|... .|+- +++ ++-.+ -..|.....+.+....+++++|||=-|-||+||+|..-++-..--
T Consensus 283 ~~mk~~v~PqiP~~lR~~F~~av--~~g~i-----rsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~l 355 (509)
T KOG1298|consen 283 TYMKESVAPQIPEKLRESFLEAV--DEGNI-----RSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVL 355 (509)
T ss_pred HHHHHhhCcCCCHHHHHHHHHHh--hccch-----hcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHH
Confidence 22221 1110 011 11111 134554434456777899999999999999999999776665433
Q ss_pred HHHHHHHHHhCCCCChhhHhhhcCCCccchHHHHHHhhcccccCCCCChhHHHHHHHHHHHHHhhcChhhhcccccccCC
Q 014843 251 LSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIK 330 (417)
Q Consensus 251 la~gI~~AL~~~~lsa~~L~~l~~Yq~nl~~~~~lqk~M~~~~~~~~~p~~in~ll~~~F~~~~~Lp~~~~~~fl~d~~~ 330 (417)
+-+.|.. -.+..+.+.+.. | +..=+...|-| .--||-|=+.++++|-.-.++.++++=|--.+
T Consensus 356 Lr~ll~p--l~dL~d~ekv~~---~---i~sFy~~RKp~---------s~tINtLa~Aly~vf~as~dea~~~mr~gCfd 418 (509)
T KOG1298|consen 356 LRRLLKP--LPDLSDAEKVSD---Y---IKSFYWIRKPY---------SATINTLANALYQVFVASTDEARKAMRKGCFD 418 (509)
T ss_pred HHHHhcc--ccccccHHHHHH---H---HHHHHHhhcch---------hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3333322 012223333321 0 00111123333 23578888899999888888877765443222
Q ss_pred ---hhHHH--HHHHHHHHhCCCChHHHHhhcCchhhhhhhHHHHHHHHHHHHHhhh
Q 014843 331 ---FGPLA--KTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFA 381 (417)
Q Consensus 331 ---~~~l~--~~m~~~~~~~P~~v~~~~~~~g~~~~~~w~~~~~~~~~~~~~~~~~ 381 (417)
.++.. .-|--+.--+|.- +.-+.||+..++|+.-.-+.
T Consensus 419 Yl~~GG~c~sGpv~lLsGlnP~P-------------l~Lv~HffAValy~i~~ll~ 461 (509)
T KOG1298|consen 419 YLKRGGFCVSGPVALLSGLNPRP-------------LSLVLHFFAVALYGIYRLLS 461 (509)
T ss_pred HHhcCCccccchHHHhcCCCCCc-------------hHHHHHHHHHHHHHHHHHcC
Confidence 11111 0011112223332 34567999999999876543
No 64
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.88 E-value=0.0006 Score=69.27 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=57.2
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
.+|+.++...|.+.+.+ |++++.+++|++++.++++|.|+|.+|.+++|+-||.|.|..++-.
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQL 193 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccc
Confidence 48999999999999999 9999999999999999999999987787799999999999887544
No 65
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.86 E-value=0.00026 Score=73.91 Aligned_cols=241 Identities=16% Similarity=0.221 Sum_probs=148.0
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEE--EecC---------------CcEEEEEEEEeccCCCchh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAE---------------GKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V--~t~~---------------g~~~~ARlVIDA~G~~Spi 96 (417)
.|+=..|..||.+||++.|.||+-+..+..+-.+.|+.++ .|.| |-++.||+-|=|.|..+.+
T Consensus 179 vv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 179 VVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred EEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 3777899999999999999999999999999999998774 3432 2379999999999999999
Q ss_pred hhhhhcCCCCCceeeeeeeeeecCCCCCcceEEEecccccccCCCCCcee--eeecCCCCCCCCc-eEEEEEeeC-----
Q 014843 97 VKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLF--WEAFPAGSGPLDR-TTYMFTYID----- 168 (417)
Q Consensus 97 arql~~g~~~~~vc~~vg~~a~G~~d~~~gei~fs~~~v~~~~~~~~qy~--We~FP~~dg~~e~-ttyLf~y~~----- 168 (417)
++|+-.+-.-..-|- -.++.-|+. ++-||- |-+. .+|++ =+.+|.... .| -.|||++-+
T Consensus 259 skqi~kkf~Lr~n~e-~qtYglGlK--EvWei~----~~~~----~pG~v~HT~GwPl~~~--tYGGsFlYh~~d~~Vav 325 (621)
T KOG2415|consen 259 SKQIIKKFDLRENCE-PQTYGLGLK--EVWEID----PENH----NPGEVAHTLGWPLDND--TYGGSFLYHFNDPLVAV 325 (621)
T ss_pred HHHHHHHhCcccCCC-cceeccccc--eeEecC----hhhc----CCcceeeeccCcccCC--ccCceeEEEcCCCeEEE
Confidence 999733211110010 111211332 111110 1111 12222 012265421 11 122332222
Q ss_pred -----CCCCCC--CHHHHHHHHHHhCCcccCCCCCccceEEeeeee--c-CC-CCCCCCCCCCCCEEEEcCCCCCCCCcc
Q 014843 169 -----PQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGI--F-PT-YRDSPLPAAFNRILQFGDASGIQSPVS 237 (417)
Q Consensus 169 -----~~~~~p--sL~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~--~-P~-~~~~p~~~~~driLlvGDAAglvdPlS 237 (417)
-+=.+| |.-+-|+++ +..|.++++ ++..+.+ .||. + -. +.+.| ++++.+=.+||=+||+.+=--
T Consensus 326 GlVVgLdY~NP~lsP~~EFQk~-K~hP~i~~v-leGgk~i--~YgARaLNEGGfQsiP-kl~FPGG~liGcSaGFlNVpK 400 (621)
T KOG2415|consen 326 GLVVGLDYKNPYLSPYKEFQKM-KHHPSISKV-LEGGKRI--AYGARALNEGGFQSIP-KLVFPGGALIGCSAGFLNVPK 400 (621)
T ss_pred EEEEEecCCCCCCCHHHHHHHh-hcCcchhhh-hcCccee--eehhhhhccCCcccCc-ccccCCceEeecccccccccc
Confidence 122556 443334333 247778776 4443222 2221 1 11 11245 777888899999999999888
Q ss_pred ccchhHHHhhHHHHHHHHHHHHhCCCCChhhHhhhcCCCccchHHHHHHhhcccc
Q 014843 238 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 292 (417)
Q Consensus 238 g~GfGs~lR~l~rla~gI~~AL~~~~lsa~~L~~l~~Yq~nl~~~~~lqk~M~~~ 292 (417)
=-|-..+|++.=-+||.|-+||++..-+.-..-....|+.|++-||-+.-+-++.
T Consensus 401 IKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvR 455 (621)
T KOG2415|consen 401 IKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVR 455 (621)
T ss_pred cccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhh
Confidence 8889999998555888899999887633222222458999999999987776654
No 66
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.76 E-value=0.0041 Score=66.45 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=112.6
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC---Cc--EEEEEEEEeccCCCchhh-hhh-hcCCCCC
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSPVV-KQI-RSGRKPD 107 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~---g~--~~~ARlVIDA~G~~Spia-rql-~~g~~~~ 107 (417)
||+.+|...+.+.|.+.|++++..++|+++..+++++.|++.+ |+ +++||.||.|.|..+.-. +++ +.. .+.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~-~~~ 230 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLP-SPY 230 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCC-CCc
Confidence 7899998999999999999999999999999888888777643 43 799999999999887544 332 211 112
Q ss_pred ceeeeeeeeee--cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC---CCCC--C---CHH
Q 014843 108 GVCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP---QAGS--P---KLE 177 (417)
Q Consensus 108 ~vc~~vg~~a~--G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~---~~~~--p---sL~ 177 (417)
.+.+.-|+... ...... .-.++.. + .+.++| .+|..++ .+.+|+-++. .+.+ + .++
T Consensus 231 ~i~p~kG~~lvl~~~~~~~-~~~~~~~---~-----dgr~v~-~~P~~~g----~~liGttd~~~~~~~~~~~~~~~~i~ 296 (508)
T PRK12266 231 GIRLVKGSHIVVPRLFDHD-QAYILQN---P-----DGRIVF-AIPYEDD----FTLIGTTDVEYKGDPAKVAISEEEID 296 (508)
T ss_pred ceeeeeeEEEEECCcCCCC-cEEEEeC---C-----CCCEEE-EEEeCCC----eEEEecCCCCCCCCCCCCCCCHHHHH
Confidence 23344343321 111111 1111111 1 356778 7898643 5556654322 1111 2 455
Q ss_pred HHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCC---CCCCCCCCCEEEEcC---CCCCCCCccccchhHHHhhHHHH
Q 014843 178 ELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD---SPLPAAFNRILQFGD---ASGIQSPVSFGGFGSLTRHLGRL 251 (417)
Q Consensus 178 ~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~---~p~~~~~driLlvGD---AAglvdPlSg~GfGs~lR~l~rl 251 (417)
.+++...+.+| .+++...+.+.--|+-|.-.+ .+..+..+.++...+ ..++++=+ |+.+- ....+
T Consensus 297 ~Ll~~~~~~~p----~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~-Ggk~T----t~r~m 367 (508)
T PRK12266 297 YLCKVVNRYFK----KQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVF-GGKIT----TYRKL 367 (508)
T ss_pred HHHHHHHHhcC----CCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEE-cChHH----HHHHH
Confidence 55555555453 123333455555566665431 234455666666542 34555533 33332 22336
Q ss_pred HHHHHHHH
Q 014843 252 STGVYEAV 259 (417)
Q Consensus 252 a~gI~~AL 259 (417)
|+.+.+++
T Consensus 368 Ae~~~~~~ 375 (508)
T PRK12266 368 AEHALEKL 375 (508)
T ss_pred HHHHHHHH
Confidence 66655444
No 67
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.68 E-value=0.0058 Score=61.32 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=55.3
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
.+|+.++...+.+++.+.|++++.+++|++++..++++.|++.+| +++|+.||.|+|..+.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 478999999999999999999999999999999999999988666 7999999999998754
No 68
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.64 E-value=0.00015 Score=70.98 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=58.5
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECC-eE---EEEe----c-----CCcEEEEEEEEeccCCCchhhhh
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLL----A-----EGKILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~v---~V~t----~-----~g~~~~ARlVIDA~G~~Spiarq 99 (417)
..+|+..|...|.++|.+.|++++.+++|.++..+++ .+ ++.. . +..+++||.||||+|+.|+++++
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~ 178 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSV 178 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHH
Confidence 3589999999999999999999999999999988776 22 2211 0 12479999999999999999998
Q ss_pred hhcCC
Q 014843 100 IRSGR 104 (417)
Q Consensus 100 l~~g~ 104 (417)
+....
T Consensus 179 l~~~~ 183 (257)
T PRK04176 179 LARKG 183 (257)
T ss_pred HHHHc
Confidence 75543
No 69
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.64 E-value=0.00015 Score=70.97 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=57.4
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe--EE-EEec-----------CCcEEEEEEEEeccCCCchhhhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EGKILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~--v~-V~t~-----------~g~~~~ARlVIDA~G~~Spiarq 99 (417)
..|+..+.+.|.+++.+.|++++.+++|.++..++++ +. |.+. +..+++||+||||+||.|+++++
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~ 175 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAV 175 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHH
Confidence 3689999999999999999999999999999988773 21 2221 12479999999999999999998
Q ss_pred hhcC
Q 014843 100 IRSG 103 (417)
Q Consensus 100 l~~g 103 (417)
+...
T Consensus 176 l~~~ 179 (254)
T TIGR00292 176 CAKK 179 (254)
T ss_pred HHHH
Confidence 7554
No 70
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.61 E-value=0.013 Score=58.86 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=56.4
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCC-chhhhhhhc
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRS 102 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~-Spiarql~~ 102 (417)
.+|+.++.+.|.+.+.+.|++++.+++|++++.+++++.|.+.++ +++|+.||.|.|.. +.++++++.
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~ 209 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI 209 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc
Confidence 478999999999999999999999999999999888888887655 78998777787765 556665543
No 71
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.61 E-value=0.0083 Score=63.84 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=95.2
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC----cEEEEEEEEeccCCCchhhhhhhcCCC-CCce
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSPVVKQIRSGRK-PDGV 109 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g----~~~~ARlVIDA~G~~Spiarql~~g~~-~~~v 109 (417)
||+.+|...+.+.|.+.|++++..++|+++...++++.|++.++ .+++|+.||.|+|..+.-....-.+.+ ...+
T Consensus 152 vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v 231 (502)
T PRK13369 152 VDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNV 231 (502)
T ss_pred ecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcce
Confidence 79999999999999999999999999999999888888876543 369999999999988764432111211 1234
Q ss_pred eeeeeeeeecCCCC-Ccc-eEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCC---CCCC--C---CHHHH
Q 014843 110 CLVVGSCARGFKDN-STS-DVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP---QAGS--P---KLEEL 179 (417)
Q Consensus 110 c~~vg~~a~G~~d~-~~g-ei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~---~~~~--p---sL~~l 179 (417)
.++-|+... ++.. ... -.++.. . .+..+| .+|..++ .+.+|+-+.. .+.+ + .++.+
T Consensus 232 ~p~kG~~lv-~~~~~~~~~~~~~~~---~-----dgr~~~-i~P~~~~----~~liGtTd~~~~~~~~~~~~~~~~i~~l 297 (502)
T PRK13369 232 RLVKGSHIV-VPKFWDGAQAYLFQN---P-----DKRVIF-ANPYEGD----FTLIGTTDIAYEGDPEDVAADEEEIDYL 297 (502)
T ss_pred EEeeEEEEE-eCCccCCCceEEEeC---C-----CCeEEE-EEEecCC----EEEEEecCccccCCCCCCCCCHHHHHHH
Confidence 444443321 1110 001 111111 1 245677 7888643 4556665432 1112 2 55566
Q ss_pred HHHHHHhCCcccCCCCCccceEEeeeeecCCCC
Q 014843 180 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYR 212 (417)
Q Consensus 180 ~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~ 212 (417)
++...+.+| ..+++..+.+.--|+-|...
T Consensus 298 l~~~~~~~~----~~l~~~~i~~~waGlRPl~~ 326 (502)
T PRK13369 298 LDAANRYFK----EKLRREDVVHSFSGVRPLFD 326 (502)
T ss_pred HHHHHHhhC----CCCCHhHEEEEeeceEEcCC
Confidence 666555554 12333344555556667653
No 72
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.48 E-value=0.012 Score=60.25 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=54.9
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC-----cEEEEEEEEeccCCCch-hhhhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQI 100 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g-----~~~~ARlVIDA~G~~Sp-iarql 100 (417)
+|..++...|.+.|.+.|+++.++++|++++..+++++|.+.++ .+++|+.||.|.|..+. +++.+
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~ 265 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAML 265 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHh
Confidence 68889999999999999999999999999998888887765432 37999999999999875 44333
No 73
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.44 E-value=0.0012 Score=68.79 Aligned_cols=72 Identities=15% Similarity=0.031 Sum_probs=55.4
Q ss_pred ceeeccChHHHHHHHHH-HH-hh-cCcEEEcCceEEEEEEE--------CCeEEEEecCCcEEEEEEEEeccCCCchhhh
Q 014843 30 SILEFREPAKLIEIVKK-RF-IS-LGGVIFEGYSVSSICTY--------ENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 98 (417)
Q Consensus 30 ~~~~~Vdr~~L~~~L~~-ka-~~-~Gg~i~~~t~v~~i~~~--------~d~v~V~t~~g~~~~ARlVIDA~G~~Spiar 98 (417)
+++.++..+-++.-|.. ++ .+ -..+|.+.+.+..|.+- +....+++.+|..|.++|+|+|||++|++-+
T Consensus 142 d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~ 221 (481)
T KOG3855|consen 142 DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRK 221 (481)
T ss_pred cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhh
Confidence 45677888888888884 22 22 55799999999999883 2355577778999999999999999998876
Q ss_pred hhh
Q 014843 99 QIR 101 (417)
Q Consensus 99 ql~ 101 (417)
-.+
T Consensus 222 ~sn 224 (481)
T KOG3855|consen 222 ASN 224 (481)
T ss_pred hcC
Confidence 543
No 74
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.40 E-value=0.0061 Score=67.04 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=56.4
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
.|++..+.+.|.+.+.+ |+++..+++|++++..+++|+|++.+|..++|+.||.|+|..++-
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAAR 465 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccc
Confidence 37999999999999999 999999999999999999999998777778999999999998753
No 75
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.22 E-value=0.0012 Score=60.34 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCC
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~ 93 (417)
....+.+.++|.+-+.+.|.+++.+++|+++...+++|.|++.++++++|+.||.|+|+.
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 377888899999999999999999999999999999999999888899999999999985
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.11 E-value=0.022 Score=58.26 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=53.7
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEE-CCeE-EEEecCCcEEEEE-EEEeccCCCchhhhhhhcC
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG 103 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~-~d~v-~V~t~~g~~~~AR-lVIDA~G~~Spiarql~~g 103 (417)
.+|+..+-..|.+.|.+.|++++++++|++++.. ++.+ .|+|.+| +++|+ +||.|.|..+.+.+.++..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~ 250 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR 250 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence 4788899888999999999999999999999765 3443 4777666 57775 7788888887777765443
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.08 E-value=0.004 Score=63.64 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh-hhhhhcCCCCCceeee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSGRKPDGVCLV 112 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi-arql~~g~~~~~vc~~ 112 (417)
.||+..+.+.|.+++.+.|++++.+++|++++.+++++.|++.+| +++|+.||.|.|..|+- ++.++.. .+..+.++
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~-~~~~v~p~ 222 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE-PDFRIVPF 222 (393)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC-CCCceEEe
Confidence 478999999999999999999999999999998888888888655 79999999999999854 4433322 12334454
Q ss_pred eeeee
Q 014843 113 VGSCA 117 (417)
Q Consensus 113 vg~~a 117 (417)
-|++.
T Consensus 223 rGq~~ 227 (393)
T PRK11728 223 RGEYY 227 (393)
T ss_pred eeEEE
Confidence 45443
No 78
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.00 E-value=0.066 Score=54.66 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=53.1
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEeccCCCch
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
.+|+.++.+.|.+.+.+.|++|+++++|++++.+++++. |+|. +.+++|+.||.|.|..+.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchH
Confidence 368889999999999999999999999999999888764 6664 458999999999999875
No 79
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.98 E-value=0.0036 Score=60.60 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=54.3
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEEC-CeE---EEEec----CC-----cEEEEEEEEeccCCCchhh
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA----EG-----KILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~-d~v---~V~t~----~g-----~~~~ARlVIDA~G~~Spia 97 (417)
=...+|...+-..|..++.++|++|+..+.|.++.+.+ +.| ++.-. .| -+++||+||||+||-++++
T Consensus 89 g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 89 GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 34558999999999999999999999999999999998 433 33311 12 3799999999999999998
Q ss_pred hhhh
Q 014843 98 KQIR 101 (417)
Q Consensus 98 rql~ 101 (417)
+-+-
T Consensus 169 ~~~~ 172 (230)
T PF01946_consen 169 RVLA 172 (230)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 8763
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.76 E-value=0.0081 Score=63.32 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=62.9
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcE-EEEEEEEeccCCCchhhhhhhcCCCCCceee
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSPVVKQIRSGRKPDGVCL 111 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~-~~ARlVIDA~G~~Spiarql~~g~~~~~vc~ 111 (417)
.||...+-.-+.+.|.+.|+++..+++|++|++++|+ .++.|.+|++ ++||.||.|-|..|--.-|.-...+.-..+|
T Consensus 149 iV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P 228 (429)
T COG0579 149 IVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFP 228 (429)
T ss_pred eEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCc
Confidence 4899999999999999999999999999999999994 5567777766 9999999998887755555433322133344
Q ss_pred eeee
Q 014843 112 VVGS 115 (417)
Q Consensus 112 ~vg~ 115 (417)
+-|+
T Consensus 229 ~~G~ 232 (429)
T COG0579 229 VRGE 232 (429)
T ss_pred cceE
Confidence 3333
No 81
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.0047 Score=60.05 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=59.3
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECC-e---EEEE-e----c----CCcEEEEEEEEeccCCCchhhh
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLL-L----A----EGKILSSHLIIDAMGNFSPVVK 98 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~---v~V~-t----~----~g~~~~ARlVIDA~G~~Spiar 98 (417)
...+|...|-..|..+|.++|++|+..++|.++.+.++ + ++|. | . |--+++||+||||+||-.++.+
T Consensus 103 ~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~ 182 (262)
T COG1635 103 YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVS 182 (262)
T ss_pred eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHH
Confidence 45689999999999999999999999999999999988 2 3332 1 1 1237999999999999999988
Q ss_pred hhhcC
Q 014843 99 QIRSG 103 (417)
Q Consensus 99 ql~~g 103 (417)
-+..+
T Consensus 183 ~~~kr 187 (262)
T COG1635 183 FLAKR 187 (262)
T ss_pred HHHHh
Confidence 76443
No 82
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.33 E-value=0.34 Score=51.73 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=54.9
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe---cCC--cEEEEEEEEeccCCCchhhhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEG--KILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t---~~g--~~~~ARlVIDA~G~~Spiarq 99 (417)
.||+.+|...+.+.|.+.|++++..++|+++..+++.+. |++ .+| .+++|+.||.|.|..+.-..+
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 195 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAE 195 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHH
Confidence 589999999999999999999999999999999888643 443 234 379999999999988765544
No 83
>PRK07233 hypothetical protein; Provisional
Probab=96.26 E-value=1 Score=45.81 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 92 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~ 92 (417)
..+-+.|.+.+.+.|++|..+++|++|+.+++++++.+.++++++|+.||-|...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 4577888888888999999999999999988887655456778999999988775
No 84
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.17 E-value=0.023 Score=60.59 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=59.7
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECC-eEEEEec---CC--cEEEEEEEEeccCCC-chhhhhhhcCC-C
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNF-SPVVKQIRSGR-K 105 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~v~V~t~---~g--~~~~ARlVIDA~G~~-Spiarql~~g~-~ 105 (417)
.||+.++...|.+.+.+.|++++.+|+|++++..++ +|.|++. +| .+++|+.||-|.|.. +.+++.++... +
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~ 253 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVK 253 (483)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCC
Confidence 389999999999999999999999999999998764 5777532 23 368999987666654 45555554332 1
Q ss_pred CCceeeeeeeee
Q 014843 106 PDGVCLVVGSCA 117 (417)
Q Consensus 106 ~~~vc~~vg~~a 117 (417)
.-.+.|+.|++.
T Consensus 254 ~~~i~P~~Gq~l 265 (483)
T TIGR01320 254 GFAGFPVSGLFL 265 (483)
T ss_pred CCceeeeeEEEE
Confidence 223455555554
No 85
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.09 E-value=0.029 Score=60.17 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=61.4
Q ss_pred ccChHHHHHHHHHHHhh----cC--cEEEcCceEEEEEEE-CCeEEEEecCCcEEEEEEEEeccCCCc-hhhhhhhcCCC
Q 014843 34 FREPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRSGRK 105 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~----~G--g~i~~~t~v~~i~~~-~d~v~V~t~~g~~~~ARlVIDA~G~~S-piarql~~g~~ 105 (417)
.||+.+|-..+.+.|.+ .| ++|+.+|+|++++.. ++.|.|+|.+| +++|+.||-|.|..| ++++..+-+.
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~- 284 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL- 284 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC-
Confidence 58999999999999988 77 679999999999988 55678888656 799998888888666 5777665432
Q ss_pred CCceeeeeeee
Q 014843 106 PDGVCLVVGSC 116 (417)
Q Consensus 106 ~~~vc~~vg~~ 116 (417)
.-.+.|+-|+.
T Consensus 285 ~~~i~Pv~G~~ 295 (497)
T PTZ00383 285 EYSCLPVAGSF 295 (497)
T ss_pred CCCEEecCceE
Confidence 23444444443
No 86
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.09 E-value=0.52 Score=49.21 Aligned_cols=58 Identities=9% Similarity=0.207 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQI 100 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql 100 (417)
.|-+.|.+++.+ ++|..+++|++|+.++++|.|++.+|+++.|+.||-|.- .+.+..+
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p--~~~~~~l 284 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP--HDIAETL 284 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC--HHHHHhh
Confidence 344444444432 579999999999999999999887788899999998873 3444443
No 87
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=95.98 E-value=0.022 Score=59.40 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=49.8
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEeccCC
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 92 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~G~ 92 (417)
-.+|||+++..++.+.+.+.....+.+++|+++..+++.+. |.+.+|..+.|+.||.|+|.
T Consensus 89 r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 89 RAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 34699999999999999995554445789999999888766 78888999999999999999
No 88
>PLN02612 phytoene desaturase
Probab=95.96 E-value=0.65 Score=50.57 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE--EEecCCcEEEEEEEEeccCCCchhhhh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAEGKILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~--V~t~~g~~~~ARlVIDA~G~~Spiarq 99 (417)
+.|-+-|.+...+.|++|..+++|++|+.++|+++ |.+.+|+++.|+.||-|+.. .+.+.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~--~~l~~ 369 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV--DILKL 369 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH--HHHHH
Confidence 45566677777778999999999999999777743 56667889999999999753 44443
No 89
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.78 E-value=0.042 Score=58.81 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=52.3
Q ss_pred ccChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCe-EEEEec---CCc--EEEEEEEEec-cCCCchhhhhhhc
Q 014843 34 FREPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDA-MGNFSPVVKQIRS 102 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~-v~V~t~---~g~--~~~ARlVIDA-~G~~Spiarql~~ 102 (417)
.||+..+.+.|.+.+.+.| ++++.+++|++++..+++ |.|.+. +|+ +++|+.||-| .|..++++++++.
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi 255 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGI 255 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence 4888999999999999887 699999999999987775 766643 353 6999977655 5555666665543
No 90
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.74 E-value=0.029 Score=58.93 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=53.1
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch-hhhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQ 99 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp-iarq 99 (417)
.+|+.+|...|.+.|.+.|++|+++++|++++. ++.+.|+|.+| +++|+-||-|.|..+. +..+
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~~ 243 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFPQ 243 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccChh
Confidence 479999999999999999999999999999975 56677888655 6999988889887643 4443
No 91
>PLN02676 polyamine oxidase
Probab=95.72 E-value=0.63 Score=49.69 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhc------CcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCC
Q 014843 38 AKLIEIVKKRFISL------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 92 (417)
Q Consensus 38 ~~L~~~L~~ka~~~------Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~ 92 (417)
..|.+.|.+++.+. +..|..+++|++|...+++|+|+|.+|++++|+.||-|...
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 34555555555432 25799999999999999999999988889999999999863
No 92
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.68 E-value=0.0029 Score=66.04 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE---EEecCC-cEEEEEEEEeccCCCchhhhhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEG-KILSSHLIIDAMGNFSPVVKQI 100 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~---V~t~~g-~~~~ARlVIDA~G~~Spiarql 100 (417)
.+|+..+...|.+.+.++|++|+.+|.++++..+++.++ +.+.+| .+++||++|||+|. +-+++..
T Consensus 86 ~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~a 155 (428)
T PF12831_consen 86 PFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD-GDLAALA 155 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 599999999999999999999999999999999875433 433334 48999999999995 4666654
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.68 E-value=0.029 Score=61.66 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=50.5
Q ss_pred ccChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEeccCCCc
Q 014843 34 FREPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.+||..+...+.+.+.+. |..++ +++|+++..+++.++ |.+.+|..++|+.||+|+|+++
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 599999999999999876 55664 667999988877765 7777888999999999999875
No 94
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.47 E-value=1.2 Score=46.28 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=35.5
Q ss_pred cEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCC
Q 014843 53 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 92 (417)
Q Consensus 53 g~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~ 92 (417)
++|+.+++|++|..++++|.|++.+|++++|+.||=|+-.
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence 6899999999999999999998877878999999988664
No 95
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.40 E-value=1.9 Score=43.29 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=52.6
Q ss_pred ccChHHHHHHHHHHHhhcCc-EEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhh
Q 014843 34 FREPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 98 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg-~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiar 98 (417)
.+++.++..-+.+.+.+.|+ .+.+++++..+....+.+.|.|.+|. ++|.-||-|.|+.++-.-
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH
Confidence 38899999999999999994 77778999888875367788887665 999999999998866543
No 96
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.37 E-value=0.18 Score=55.85 Aligned_cols=203 Identities=16% Similarity=0.187 Sum_probs=122.4
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCchhhhhhhcCC---CCCcee
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR---KPDGVC 110 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~g~---~~~~vc 110 (417)
.||.-+=+.|...|.+.|+.|.++.+|+++....|. +-|+|..| .++|-.||+|.|.-..-+..+..-. .+-+..
T Consensus 184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~ 262 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMHHA 262 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeeeee
Confidence 588999999999999999999999999999887765 44888655 5899999999997654444332221 222333
Q ss_pred eeeeeeeecCCCCC-------cceEEEe-------cccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCCCCCCH
Q 014843 111 LVVGSCARGFKDNS-------TSDVIYS-------SSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKL 176 (417)
Q Consensus 111 ~~vg~~a~G~~d~~-------~gei~fs-------~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~~~psL 176 (417)
-++-..++|+.... .|.+++- ++..+. .. | |+.+-. .--.+.++.. +.+ -.
T Consensus 263 YvvT~~IeGi~s~t~p~irD~DgSvylR~~~~gil~GGyE~----n~---i--~~egv~-~~~~~~lqE~---DWd--~F 327 (856)
T KOG2844|consen 263 YVVTSRIEGVSSLTRPNIRDLDGSVYLRQQGDGILFGGYES----NP---I--FTEGVP-PGFATGLQEP---DWD--HF 327 (856)
T ss_pred EEEecccCCccCCCccceecccceEEEEecCCceecccccc----Cc---e--eccccC-Cccccccccc---cHh--hh
Confidence 34444445654211 1233321 111111 01 1 222100 0011222210 111 34
Q ss_pred HHHHHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCCCCCCCCCEEEEcCCCCCCCCccccchhHH-HhhHHHHHHHH
Q 014843 177 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL-TRHLGRLSTGV 255 (417)
Q Consensus 177 ~~l~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p~~~~~driLlvGDAAglvdPlSg~GfGs~-lR~l~rla~gI 255 (417)
....+..+++.|.+++.+++++ +-| .-++- -|..=.+|.|..+..=+..|||.++ |-.++-+++.+
T Consensus 328 ~~hlesai~r~P~l~k~~i~~~-----v~g-pe~ft-------PD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~l 394 (856)
T KOG2844|consen 328 EPHLEAAIERVPVLEKAGIKSL-----VNG-PETFT-------PDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYL 394 (856)
T ss_pred HHHHHHHHHhCchhhhcCccce-----ecC-ccccC-------CccccccCCCccccceEEeecCCccceeccCchhHHH
Confidence 5667788889999988876554 112 11222 2334458999999999999999954 55555588888
Q ss_pred HHHHhCCCCCh
Q 014843 256 YEAVRGDFVDS 266 (417)
Q Consensus 256 ~~AL~~~~lsa 266 (417)
++=+-+|.-+.
T Consensus 395 a~wi~~g~p~~ 405 (856)
T KOG2844|consen 395 AEWIIHGQPPL 405 (856)
T ss_pred HHHhhcCCCCc
Confidence 88888876543
No 97
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.17 E-value=0.098 Score=54.20 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc-----------hhhhhhhcC
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS-----------PVVKQIRSG 103 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S-----------piarql~~g 103 (417)
....+.+.+.+.+.+.|++++.+++|++++..++.+.|++ +++++.|+.||.|+|..| .++++++..
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 3467888889999999999999999999988888888887 566899999999999877 567666554
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.13 E-value=0.073 Score=55.83 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCc
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
+.....+.|.+++.+.|++++.+++|.+++..+++ +.|++++++++.|+-||=|+|..|
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 67788899999999999999999999999999888 888886677999999999999876
No 99
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=94.87 E-value=0.099 Score=54.66 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
+...+.+.|+.++.+.|++|+.++++.+++..+++..|+|++|++++|.-+|-|+|-.|
T Consensus 109 kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 109 KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcC
Confidence 45778999999999999999999999999999999999998888899999999998554
No 100
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.70 E-value=3.2 Score=41.81 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEe-cCCcEEEEEEEEeccC
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAMG 91 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t-~~g~~~~ARlVIDA~G 91 (417)
+.+.|.+.+.+.|++|..+++|++|+.+++++++.+ .+|+++.|+.||-|.-
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p 251 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVP 251 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCC
Confidence 334466666678999999999999999999866543 3577889998987744
No 101
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.65 E-value=0.2 Score=53.84 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=59.1
Q ss_pred cChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEE-CCeEEEE---ecCCc--EEEEEEEEeccCCCc-hhhhhhhcCC-C
Q 014843 35 REPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLL---LAEGK--ILSSHLIIDAMGNFS-PVVKQIRSGR-K 105 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~-~d~v~V~---t~~g~--~~~ARlVIDA~G~~S-piarql~~g~-~ 105 (417)
||...|.+.+.+.+.+ .|++++.+++|++++.. +++|+|+ +.+++ +++|+.||-|.|..| .+++.++... .
T Consensus 181 VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~ 260 (497)
T PRK13339 181 VNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESK 260 (497)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccC
Confidence 8999999999999965 58999999999999988 6678876 33442 689999977776666 4555544321 1
Q ss_pred CCceeeeeeeee
Q 014843 106 PDGVCLVVGSCA 117 (417)
Q Consensus 106 ~~~vc~~vg~~a 117 (417)
.-.+-|+-|++.
T Consensus 261 ~~~i~PvkGq~l 272 (497)
T PRK13339 261 HLGGFPISGQFL 272 (497)
T ss_pred CCceEeeeEEEE
Confidence 124455555554
No 102
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.64 E-value=0.078 Score=57.27 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=52.9
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe---cCC--cEEEEEEEEeccCCCchhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEG--KILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t---~~g--~~~~ARlVIDA~G~~Spia 97 (417)
.||+.+|...+.+.|.+.|++++..++|+++..+++++. |++ .++ .+++|+.||.|.|..+.-.
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l 214 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI 214 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHH
Confidence 489999999999999999999999999999998877543 443 223 4799999999999876543
No 103
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.46 E-value=2.3 Score=46.33 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=56.4
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC---Cc--EEEEEEEEeccCCCchhhhhhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSPVVKQIR 101 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~---g~--~~~ARlVIDA~G~~Spiarql~ 101 (417)
||..+|.-.....|.+.|++++..++|+++.++++.|-|.+.| |+ +++||.||.|.|..+--..+..
T Consensus 161 vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 161 VDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred echHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 8999999999999999999999999999999999855566543 33 6999999999997666555544
No 104
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.24 E-value=0.25 Score=54.48 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=52.5
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEEC--CeE-EEEe---cCCc--EEEEEEEEeccCCCchhhhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAA-VLLL---AEGK--ILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~--d~v-~V~t---~~g~--~~~ARlVIDA~G~~Spiarq 99 (417)
||+.+|...+.+.|.+.|++++..++|+++..++ +.+ .|++ .+++ +++|+.||.|.|..|.-..+
T Consensus 229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~ 301 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRK 301 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHH
Confidence 7999999999999999999999999999998873 433 2333 2343 68999999999998775544
No 105
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.10 E-value=0.16 Score=53.52 Aligned_cols=65 Identities=28% Similarity=0.298 Sum_probs=54.8
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCC--cEEEEEEEEeccCCC-ch-hhhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQ 99 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g--~~~~ARlVIDA~G~~-Sp-iarq 99 (417)
|-..+|.+.|.+.+++.|++++.+++|+++.+++++++ |.|.++ .+++|+-||-|+|+. |. ++++
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 66788999999999999999999999999999998777 565554 489999999999998 44 5554
No 106
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.10 E-value=0.27 Score=52.61 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=54.5
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.+...|.+.+.+++.+.|.+++.+++++++...++.+.|.+.+|.+++++.||-|+|..+
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 577889999999999999999999999999998888899887788899999999999975
No 107
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=93.82 E-value=0.19 Score=55.45 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=49.1
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEE-CC-eEEEEecCCcEEEEEEEEeccCCCc
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN-AAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~-~d-~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.|||..+...+.+.+.+.++..+...+|+++..+ ++ .+.|.+.+|..++|+.||+|+|++.
T Consensus 92 QVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 92 QIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred hCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 6899999999999999985544455678888776 33 3457777788999999999999995
No 108
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.43 E-value=0.35 Score=46.44 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=51.9
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
+....+...+.+.+.+.|.++.. ++|+++..+++.+.|.+.++++++++.||-|+|..+.
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 45567888999999999999988 8999999988889998877789999999999998653
No 109
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.27 E-value=0.24 Score=49.69 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=47.1
Q ss_pred ccChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 34 FREPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
.||+.++...|.+.+.+. |++++++++|++++. + .|.|.+| +++|+.||-|.|..|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence 379999999999998774 999999999999964 2 5667555 5789999999998764
No 110
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.12 E-value=12 Score=38.48 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=34.1
Q ss_pred EEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccC
Q 014843 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 91 (417)
Q Consensus 54 ~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G 91 (417)
+|+.+++|++|+.++++|.|.+.+|+++.++.||-|.-
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p 272 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVP 272 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCC
Confidence 89999999999999999988887888899999998854
No 111
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=92.75 E-value=11 Score=40.37 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=106.9
Q ss_pred HHHHHHHhh-cCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEec-----------cCCCchhhhhhhcCCCCCce
Q 014843 42 EIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA-----------MGNFSPVVKQIRSGRKPDGV 109 (417)
Q Consensus 42 ~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA-----------~G~~Spiarql~~g~~~~~v 109 (417)
+.|-+.+.+ .|..|..+++|.+|.+.+|+|+|++.+.++++|+++|-| +..-++--+|+-.+-+
T Consensus 209 d~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~---- 284 (450)
T COG1231 209 DQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVP---- 284 (450)
T ss_pred HHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcC----
Confidence 445555544 777999999999999999999999976578999999976 3333333333322221
Q ss_pred eeeeeeeee-cCC--------CC-CcceEEEecccccccCCCCCceeeeecCCC---CCCCCceEEEEEeeC-CCC----
Q 014843 110 CLVVGSCAR-GFK--------DN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAG---SGPLDRTTYMFTYID-PQA---- 171 (417)
Q Consensus 110 c~~vg~~a~-G~~--------d~-~~gei~fs~~~v~~~~~~~~qy~We~FP~~---dg~~e~ttyLf~y~~-~~~---- 171 (417)
.+++.. ++. +. -.|+.+.+. + .+++| +|-. +| ..+.++.|.- ...
T Consensus 285 ---y~~~~K~~v~f~rpFWee~~~l~G~~~tD~-~--------~~~i~--~~s~~~~~G---~gVl~g~~~~g~~A~~~~ 347 (450)
T COG1231 285 ---YGSATKIGVAFSRPFWEEAGILGGESLTDL-G--------LGFIS--YPSAPFADG---PGVLLGSYAFGDDALVID 347 (450)
T ss_pred ---cchheeeeeecCchhhhhcccCCceEeecC-C--------cceEe--cCccccCCC---ceEEEeeeeccccceeEe
Confidence 222222 211 11 234433222 2 37777 5655 45 6777775651 111
Q ss_pred -CCC--CHHHHHHHHHHhCC-cccCCCCCc---cceEEee--eeecCCCCC-------CCCCCCCCCEEEEcCCCCCCCC
Q 014843 172 -GSP--KLEELLERYWDLMP-EYQGVTLDN---LEIQRVI--YGIFPTYRD-------SPLPAAFNRILQFGDASGIQSP 235 (417)
Q Consensus 172 -~~p--sL~~l~e~y~~~LP-~y~g~~l~~---~~~~~~~--~G~~P~~~~-------~p~~~~~driLlvGDAAglvdP 235 (417)
..+ -.++...++-+.+| ++.. .++. ..|.+.. .|....|.. ..++..-.||-..| +=.+|
T Consensus 348 ~~~~~~r~~~vl~~l~~~~g~~a~~-~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~Ag---tEhas 423 (450)
T COG1231 348 ALPEAERRQKVLARLAKLFGDEAAD-PFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAG---TEHAS 423 (450)
T ss_pred cCCHHHHHHHHHHhHhhhCChhhcc-ccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEee---ecccc
Confidence 111 23344444444555 2222 1222 1222211 122223221 11345567777766 34456
Q ss_pred ccccchhHHHhhHHHHHHHHHHHHhC
Q 014843 236 VSFGGFGSLTRHLGRLSTGVYEAVRG 261 (417)
Q Consensus 236 lSg~GfGs~lR~l~rla~gI~~AL~~ 261 (417)
..+|=+=-++|+.-+.|..|...+.+
T Consensus 424 ~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 424 EFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcC
Confidence 67777788889888888888776654
No 112
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=92.56 E-value=6.2 Score=41.00 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=51.7
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEE---ECCeEEEEecCCcEEEEEEEEeccCCC
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~---~~d~v~V~t~~g~~~~ARlVIDA~G~~ 93 (417)
+.+++=+..+..++++.|+.+.+++.++.+.+ ++.++.|+|.+|..|.|+=+|=|.|+-
T Consensus 150 i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 150 INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 56889999999999999999999999999874 456888988888889999999999954
No 113
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.54 E-value=0.59 Score=48.66 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=55.7
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC-CcEEEEEEEEeccCCCc-----------hhhhhhhc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS-----------PVVKQIRS 102 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~-g~~~~ARlVIDA~G~~S-----------piarql~~ 102 (417)
-+.....+.|...+.+.|++|+.+++|++| +++++.|.+.+ +..++|+-||-|+|..| .+|++++.
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 467778888999999999999999999999 45567787643 34799999999999876 78888777
Q ss_pred CC
Q 014843 103 GR 104 (417)
Q Consensus 103 g~ 104 (417)
..
T Consensus 161 ~i 162 (376)
T TIGR03862 161 SV 162 (376)
T ss_pred cc
Confidence 63
No 114
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=92.10 E-value=0.54 Score=48.82 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECC----eEEEEecCCc--EEEEEEEEeccCCCch
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d----~v~V~t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
+...+.+.|.+++.+.|++++.+++++++..+++ ++++.+.+++ .+++|-||-|+|..+.
T Consensus 128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4457889999999999999999999999998654 3444444443 4789999999998876
No 115
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.05 E-value=0.95 Score=48.51 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=52.9
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
....++.+.+.+++.+.|.+++.+++|+++..+++.+.|++.+|.+++++.||-|+|...
T Consensus 264 ~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 456788889999998899999999999999988888888887788899999999999873
No 116
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.53 E-value=0.99 Score=40.51 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=59.6
Q ss_pred eccchhhhhccc----ccceeeccChHHHHHHHHHHHhh------cCc-EEEcCceEEEEEEECCeEEEEecCCcEEEEE
Q 014843 16 VDLRGRVKSGLK----TFSILEFREPAKLIEIVKKRFIS------LGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSH 84 (417)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~Vdr~~L~~~L~~ka~~------~Gg-~i~~~t~v~~i~~~~d~v~V~t~~g~~~~AR 84 (417)
-|+.+|+.+... ...--.++.|..+-+||.+.+.. .|. ......+|+++...++++.|.+.+|..+.+.
T Consensus 68 ~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d 147 (156)
T PF13454_consen 68 DDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD 147 (156)
T ss_pred CCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence 467777777764 22334558898888888876544 233 3446779999999999999998889999999
Q ss_pred EEEeccCCC
Q 014843 85 LIIDAMGNF 93 (417)
Q Consensus 85 lVIDA~G~~ 93 (417)
.||=|.||.
T Consensus 148 ~VvLa~Gh~ 156 (156)
T PF13454_consen 148 AVVLATGHQ 156 (156)
T ss_pred EEEECCCCC
Confidence 999999983
No 117
>PRK09897 hypothetical protein; Provisional
Probab=91.39 E-value=0.72 Score=50.14 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHhhcC--cEEEcCceEEEEEEECCeEEEEecC-CcEEEEEEEEeccCCCch
Q 014843 44 VKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 44 L~~ka~~~G--g~i~~~t~v~~i~~~~d~v~V~t~~-g~~~~ARlVIDA~G~~Sp 95 (417)
+.+++.+.| +.++.+++|++++.++++++|++.+ |..+.+..||-|+||..|
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 345566666 6888899999999999999998755 468999999999999643
No 118
>PLN02661 Putative thiazole synthesis
Probab=91.12 E-value=0.51 Score=48.87 Aligned_cols=64 Identities=6% Similarity=0.218 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE-EEe------cC--C------cEEEEEEEEeccCCCchhhhh
Q 014843 36 EPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLL------AE--G------KILSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 36 dr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~-V~t------~~--g------~~~~ARlVIDA~G~~Spiarq 99 (417)
+...+...|.+++.+ .|.+++.++.+.++..+++.+. |.+ .+ + ..++||.||+|+||.+|+...
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence 445556778888876 7889999999999998776432 211 11 1 268999999999999887764
No 119
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=90.98 E-value=0.76 Score=48.56 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCc
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
..+-+.|.+.+++.|++|+.+++|++|..++++ +.|++.+|++++|+.||-|.+...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 567788888888999999999999999988776 557777788899999998877543
No 120
>PRK07804 L-aspartate oxidase; Provisional
Probab=90.77 E-value=0.71 Score=49.91 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECC----eEEEE-----ecCC-cEEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d----~v~V~-----t~~g-~~~~ARlVIDA~G~~Spi 96 (417)
..+...|.+++.+.|+++++++.++++..+++ ++++. +.++ ..++||.||.|+|..|.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 46788888999889999999999999988765 34443 1223 368999999999998853
No 121
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=90.77 E-value=0.74 Score=49.07 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCch
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
+..+-+.++..+.|++++.+|+|.+++++++. -.|.+.+|+++.+|.||-|-|+.|.
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 44556777899999999999999999999885 3466777889999999999999864
No 122
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=90.44 E-value=0.83 Score=49.38 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EE---ecCCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~---t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
..+...|.+++.+.|+++++++.++++..+++.++ |. ..+|+ .++||.||.|+|..|.+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 35778888889889999999999999988766543 22 23454 68999999999998754
No 123
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=90.29 E-value=1 Score=46.90 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEEC-CeEE--EEec-CCcEEEEEEEEeccCCCch
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV--LLLA-EGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~-d~v~--V~t~-~g~~~~ARlVIDA~G~~Sp 95 (417)
..+.+.|.+++++.|++|+.+++++++..++ ++.+ |.+. ++.+++||-||-|+|..+.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 4578889999999999999999999998863 3333 3332 3458999999999997654
No 124
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=90.12 E-value=0.92 Score=48.06 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
..+.+.|.+.+++.|++|+.+++|++|..+++. +.|++.+|+++.|+.||-|.|....+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHH
Confidence 457777888999999999999999999887664 446777788899999999888764443
No 125
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.52 E-value=1.2 Score=47.30 Aligned_cols=60 Identities=3% Similarity=-0.081 Sum_probs=50.2
Q ss_pred cChHHHHHHHHHHHhhcCcE--EEcCceEEEEEEECCeEEEEecCC--c--EEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~--i~~~t~v~~i~~~~d~v~V~t~~g--~--~~~ARlVIDA~G~~S 94 (417)
.....+.++|.+.|...|.. |..+|+|+++...++.|.|++.++ . +..++-||-|+|+.+
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCC
Confidence 46688999999999998887 899999999999888999987642 2 456789999999853
No 126
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=89.38 E-value=1.6 Score=44.72 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe---cCCc--EEEEEEEEeccCCCch-hhhh
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQ 99 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t---~~g~--~~~ARlVIDA~G~~Sp-iarq 99 (417)
.-..+...|.+++++.|++|+.++.++++..+++.|+ |.. .+|+ +++||-||-|+|..+- +.++
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~ 209 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQ 209 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHH
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccccc
Confidence 4578899999999999999999999999999987554 322 3454 6899999999999984 4444
No 127
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.27 E-value=1.3 Score=45.01 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
.+-..+.+++.+.|.++..+++++++..+++++.|.+.+|+++.+.+||-|.|..+.
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 455667777888999999999999998887788888778889999999999998753
No 128
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=88.87 E-value=1.8 Score=47.27 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=47.0
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE---EEecCCc-EEEE-EEEEeccCCCch
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP 95 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~---V~t~~g~-~~~A-RlVIDA~G~~Sp 95 (417)
++...|...|.+++++.|++|+.+++|+++..+++.++ +++.++. +++| |.||-|.|..+.
T Consensus 214 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 214 VNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 56677888999999999999999999999988765443 3332333 5889 888888887764
No 129
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=88.19 E-value=8.1 Score=41.09 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCe--EEEEecCCcEEEEEEEEeccCCCch
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~--v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
|-+-+.+.+...||++..+++|.+|..++++ +.|++.+|++++||.||-.....+.
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4445555667789999999999999988654 5577778889999999976666544
No 130
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=2 Score=43.41 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=65.9
Q ss_pred cccceEEEeeccchhhhhcccccceeec------cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcE
Q 014843 7 QLQNLILIDVDLRGRVKSGLKTFSILEF------REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI 80 (417)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~ 80 (417)
++...++++-+..+-..+ ++.+|-+. +.-..|.+...+++...|.++.. ..+..++..++..+|+|.+|.
T Consensus 26 ~l~~~li~~~~~~gg~~~--~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~- 101 (305)
T COG0492 26 GLKVVLILEGGEPGGQLT--KTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT- 101 (305)
T ss_pred CCCcEEEEecCCcCCccc--cceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-
Confidence 345577777765553222 22255444 55678889999999999998888 888888888778889987776
Q ss_pred EEEEEEEeccCCCchhhhh
Q 014843 81 LSSHLIIDAMGNFSPVVKQ 99 (417)
Q Consensus 81 ~~ARlVIDA~G~~Spiarq 99 (417)
|+||.||-|+|...--.+.
T Consensus 102 ~~ak~vIiAtG~~~~~~~~ 120 (305)
T COG0492 102 YEAKAVIIATGAGARKLGV 120 (305)
T ss_pred EEEeEEEECcCCcccCCCC
Confidence 9999999999998655543
No 131
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.94 E-value=1.2 Score=47.51 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECC-eEEEEecCCcEEEEEEEEeccCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN 92 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~v~V~t~~g~~~~ARlVIDA~G~ 92 (417)
..+.+.|.+.+++.|++|..+++|+.|.++++ ++.|.+.+|+.+.++.||-+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 46788899999999999999999999999987 46677766778899988877665
No 132
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.87 E-value=2.4 Score=46.18 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=53.0
Q ss_pred cccccceeeccCh--HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE----EEecCCc--EEEEEEEEeccCCCchh
Q 014843 25 GLKTFSILEFREP--AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 25 ~~~~~~~~~~Vdr--~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~----V~t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
+....++..-.|. ..+...|.+++.+.|+++++++.++++..+++.+. +.+.+|+ .++||.||-|+|..+.+
T Consensus 120 g~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 120 GHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred ccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 3444555544454 56888888999889999999999999987755432 2333453 68999999999998754
No 133
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=87.51 E-value=1.7 Score=46.26 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=51.0
Q ss_pred cceeecc--ChHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE-EEecC-C--cEEEEEEEEeccCCCchh
Q 014843 29 FSILEFR--EPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 29 ~~~~~~V--dr~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~-V~t~~-g--~~~~ARlVIDA~G~~Spi 96 (417)
.++...- +-..+...|.+++.+ .|.+++.++.++++..+++.++ |.+.+ + ..++|+.||.|+|..|.+
T Consensus 117 ~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 117 RRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 3444432 346788899999987 6899999999999987765544 43322 3 378999999999999874
No 134
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.08 E-value=2.7 Score=43.88 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=50.9
Q ss_pred eccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 33 EFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
..+|++ +.+.+.+++.+.|.+++.++++++++.+++++.|++.+|+++.+..||-|.|..+..
T Consensus 212 ~~~d~~-~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 212 SFLDDE-ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred CcCCHH-HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 334443 456677778888999999999999998888888877677889999999999988654
No 135
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=86.92 E-value=1.9 Score=45.12 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe--cCC--cEEEEEEEEeccCCCch
Q 014843 37 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP 95 (417)
Q Consensus 37 r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t--~~g--~~~~ARlVIDA~G~~Sp 95 (417)
...+...|.+++.+.|++++.+++|+++..+++.|+ |.+ .++ .+++||-||.|+|..+.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 356788899999999999999999999998766544 333 223 36899999999996543
No 136
>PLN02976 amine oxidase
Probab=86.81 E-value=26 Score=43.01 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=31.5
Q ss_pred EEEcCceEEEEEEE----------CCeEEEEecCCcEEEEEEEEec
Q 014843 54 VIFEGYSVSSICTY----------ENAAVLLLAEGKILSSHLIIDA 89 (417)
Q Consensus 54 ~i~~~t~v~~i~~~----------~d~v~V~t~~g~~~~ARlVIDA 89 (417)
.|+.+++|++|... +++|.|+|.+|.+|+|+.||-|
T Consensus 947 ~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVT 992 (1713)
T PLN02976 947 DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLIT 992 (1713)
T ss_pred CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEe
Confidence 59999999999884 4689999888889999999977
No 137
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=86.58 E-value=2.4 Score=45.41 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe---EEEEecCC--cEEEEEEEEeccCCCch
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEG--KILSSHLIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~---v~V~t~~g--~~~~ARlVIDA~G~~Sp 95 (417)
..+.+.|.+++.+.|++++.+++++++..+++. +++++.++ .+++|+.||-|+|..+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 457788889999999999999999999876554 33443343 36999999999997654
No 138
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=86.50 E-value=2.9 Score=45.77 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=52.6
Q ss_pred cccccceeeccCh--HHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEE----EEecCCc--EEEEEEEEeccCCCch
Q 014843 25 GLKTFSILEFREP--AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 25 ~~~~~~~~~~Vdr--~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~----V~t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
++...++....|+ ..+...|.+++.+. |.++++++.++++..+++.++ +...+|+ .++||.||-|+|-.|.
T Consensus 118 g~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 118 GMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred cccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 3444455544443 45777888888774 789999999999998766544 2333553 7899999999999987
Q ss_pred hh
Q 014843 96 VV 97 (417)
Q Consensus 96 ia 97 (417)
+-
T Consensus 198 l~ 199 (582)
T PRK09231 198 VY 199 (582)
T ss_pred CC
Confidence 64
No 139
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=86.41 E-value=2.7 Score=43.24 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 37 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 37 r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
...+.+++.+.+.+.|.+++.++++++++. ++.+.|++.+|+++.+.+||-|.|..+.
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 345567778888889999999999999876 5667777778889999999999998754
No 140
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.37 E-value=1.7 Score=42.72 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=41.0
Q ss_pred HHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCC
Q 014843 43 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 43 ~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~ 93 (417)
.+...+...|++|+.+++|++|+.+++++.|.+.+|+++.|+.||=|....
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred HHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 333444456789999999999999999999999999899999999876543
No 141
>PRK07121 hypothetical protein; Validated
Probab=85.38 E-value=3.5 Score=43.75 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EE-EEec-CCc--EEEE-EEEEeccCCCch
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA-EGK--ILSS-HLIIDAMGNFSP 95 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~-V~t~-~g~--~~~A-RlVIDA~G~~Sp 95 (417)
+-..+.+.|.+++.+.|++|+.+++++++..++++ ++ |.+. +++ +++| |.||-|+|..+-
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 35678889999999999999999999999887542 22 3332 333 6889 999999998763
No 142
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.26 E-value=3.1 Score=32.83 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG 78 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g 78 (417)
..+.+.+.+++.+.|.+++.++.++.++..++++.|+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 34566677888889999999999999999999977777664
No 143
>PLN02487 zeta-carotene desaturase
Probab=85.18 E-value=65 Score=35.50 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=46.0
Q ss_pred ceeec-cChH-HHHHHHHHHHhhcCcEEEcCceEEEEEEEC--Ce----EEEEe---cCCcEEEEEEEEeccCCC
Q 014843 30 SILEF-REPA-KLIEIVKKRFISLGGVIFEGYSVSSICTYE--NA----AVLLL---AEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 30 ~~~~~-Vdr~-~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~--d~----v~V~t---~~g~~~~ARlVIDA~G~~ 93 (417)
++... -+.. .|-+-+.+..++.||+|+.++.|..|..+. ++ +.|++ .+++++.+..||-|.+..
T Consensus 285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 34443 4444 477778888889999999999999999984 33 23444 234578888899898865
No 144
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=85.16 E-value=3.1 Score=45.83 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=47.3
Q ss_pred cChHHHHHHHHHHHhhcC-cEEEcCceEEEEEEECCeEE-E---EecCCc--EEEEEEEEeccCCCch
Q 014843 35 REPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-L---LLAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~G-g~i~~~t~v~~i~~~~d~v~-V---~t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
++...+...|.+++++.| ++++.++.|+++..+++.+. | .+.+++ .++||.||.|+|..+-
T Consensus 129 ~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 129 INGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 466788888989998876 89999999999987766432 2 233453 6899999999997764
No 145
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=85.09 E-value=33 Score=36.49 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEEC--CeE----EEEecCC---cEEEEEEEEeccCCC
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAA----VLLLAEG---KILSSHLIIDAMGNF 93 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~--d~v----~V~t~~g---~~~~ARlVIDA~G~~ 93 (417)
.+.+-|.++..+.|++|+.+++|++|+.++ +++ .|.+.+| +++.|..||=|....
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 355667778888999999999999999875 332 2334333 568898888888753
No 146
>PLN02576 protoporphyrinogen oxidase
Probab=84.96 E-value=53 Score=34.53 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=31.5
Q ss_pred cC-cEEEcCceEEEEEEECCe-EEEEec--CC-cEEEEEEEEecc
Q 014843 51 LG-GVIFEGYSVSSICTYENA-AVLLLA--EG-KILSSHLIIDAM 90 (417)
Q Consensus 51 ~G-g~i~~~t~v~~i~~~~d~-v~V~t~--~g-~~~~ARlVIDA~ 90 (417)
.| +.|..+++|++|+..+++ |+|++. +| +++.++-||=|+
T Consensus 249 l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~ 293 (496)
T PLN02576 249 LGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTA 293 (496)
T ss_pred hCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECC
Confidence 44 689999999999999887 666543 45 368999899876
No 147
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.81 E-value=2.7 Score=45.32 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EE-E--Ee-cCCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-L--LL-AEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~-V--~t-~~g~--~~~ARlVIDA~G~~Spi 96 (417)
..+...|.+++.+.|++++.+|.++++..++++ ++ | .. .+|+ .++||-||.|+|..+.+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCC
Confidence 457778888888899999999999999887664 32 2 22 3453 68999999999998753
No 148
>PRK06175 L-aspartate oxidase; Provisional
Probab=84.64 E-value=3.2 Score=43.60 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE-EE-ecCCc--EEEEEEEEeccCCCch
Q 014843 37 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LL-LAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 37 r~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~-V~-t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
...+.+.|.+++.+ .|++|+.+|+++++..+++.+. |. +.+++ +++||-||.|+|..+.
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 35678888888875 6899999999999987766432 22 22343 6899999999998764
No 149
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=84.00 E-value=5 Score=44.00 Aligned_cols=206 Identities=18% Similarity=0.235 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE--EEecC---Cc--EEEEEEEEeccCCCchhhhhhhcCCCCCce
Q 014843 37 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDGV 109 (417)
Q Consensus 37 r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~--V~t~~---g~--~~~ARlVIDA~G~~Spiarql~~g~~~~~v 109 (417)
-.++--.+.=-|...||.+.-..+|.+...++++=+ +.+.| |+ +++||.||.|.|.+|--.|+......+.-+
T Consensus 223 DaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~ 302 (680)
T KOG0042|consen 223 DARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPIC 302 (680)
T ss_pred hHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCcee
Confidence 334444444567778999999999999988888722 22322 54 689999999999999999998776544444
Q ss_pred eeeeeeeee--cCCCCCcceEEEecccccccCCCCCceeeeecCCCCCCCCceEEEEEeeCCCC--CCC-----CHHHH-
Q 014843 110 CLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--GSP-----KLEEL- 179 (417)
Q Consensus 110 c~~vg~~a~--G~~d~~~gei~fs~~~v~~~~~~~~qy~We~FP~~dg~~e~ttyLf~y~~~~~--~~p-----sL~~l- 179 (417)
||-.|.-+- ++-..+. -|-+.|...+++=.|. +|=. | -|-.|+-+..++ .+| ++..+
T Consensus 303 ~pSsGvHIVlP~yY~P~~------mGlldP~TsDgRViFf--lPWq-g----~TIaGTTD~pt~v~~~P~PtE~dIqfIL 369 (680)
T KOG0042|consen 303 VPSSGVHIVLPGYYCPEN------MGLLDPKTSDGRVIFF--LPWQ-G----KTIAGTTDIPTSVTHSPTPTEDDIQFIL 369 (680)
T ss_pred ccCCceeEEcccccCCcc------cccccCCCCCCcEEEE--eccC-C----ceeeccCCCCCCCCCCCCCCHHHHHHHH
Confidence 554332211 2211100 0111111111222222 3544 2 234444443322 333 33333
Q ss_pred --HHHHHHhCCcccCCCCCccceEEeeeeecCCCCCCC------CCCCCCCEEEEcCCCCCCCCccccchhHHHhhHHHH
Q 014843 180 --LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP------LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 251 (417)
Q Consensus 180 --~e~y~~~LP~y~g~~l~~~~~~~~~~G~~P~~~~~p------~~~~~driLlvGDAAglvdPlSg~GfGs~lR~l~rl 251 (417)
...|+..-++-++.|+-.+ |. |+=|.=. .| ..++.++++.+|+..=+ . ++ ||==.--|+ +
T Consensus 370 ~ev~~yl~~~~~VrR~DVlsa-Ws----GiRPLv~-DP~~~~~t~sl~R~H~v~~~~~gLi-T-Ia-GGKWTTyR~---M 437 (680)
T KOG0042|consen 370 KEVQHYLSFDVEVRREDVLSA-WS----GIRPLVR-DPKKVKDTQSLVRNHFVFVSPSGLI-T-IA-GGKWTTYRH---M 437 (680)
T ss_pred HHHHHhhCCCcccchhhhHHH-hh----CCccccc-CCCccccchhhhhhceEEecCCCeE-E-Ee-cCcchhHHH---H
Confidence 4455543333333332111 11 3323322 22 13667789999986532 2 22 222223333 6
Q ss_pred HHH-HHHHHhCCCCChh
Q 014843 252 STG-VYEAVRGDFVDSY 267 (417)
Q Consensus 252 a~g-I~~AL~~~~lsa~ 267 (417)
||. ++.|++.++|.+.
T Consensus 438 AEeTVd~aI~~~~lk~~ 454 (680)
T KOG0042|consen 438 AEETVDAAIKAGDLKPA 454 (680)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 666 9999999999873
No 150
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.40 E-value=3.5 Score=44.89 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE---E-EecCCc--EEEEEEEEeccCCCchhh
Q 014843 38 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 38 ~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~---V-~t~~g~--~~~ARlVIDA~G~~Spia 97 (417)
..+.+.|.+++.+ .|+++++++.++++..+++.++ + ...+|+ .++||.||.|+|..+.+-
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~ 203 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLY 203 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccC
Confidence 4477888888876 6889999999999988765442 2 223454 689999999999987543
No 151
>PRK08275 putative oxidoreductase; Provisional
Probab=83.16 E-value=3.8 Score=44.35 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EE-EE---ecCCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL---LAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~-V~---t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
..+.+.|.+++.+.|++|+.++.++++..++++ +. |. +.+|+ .++||.||.|+|..+.+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 367888999999999999999999999886333 22 22 23454 58999999999998754
No 152
>PRK06116 glutathione reductase; Validated
Probab=83.07 E-value=4.9 Score=41.96 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
+.+.+.+.+.+.|.+++.++++.+++.++++ +.|.+.+|+++.+..||-|.|..+...
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 4556677778899999999999999887666 777776788899999999999875543
No 153
>PLN02529 lysine-specific histone demethylase 1
Probab=82.98 E-value=60 Score=37.01 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=31.9
Q ss_pred CcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEec
Q 014843 52 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 89 (417)
Q Consensus 52 Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA 89 (417)
+..|..+++|++|...+++|+|++ ++++++|+.||=|
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVT 402 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCT 402 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEEC
Confidence 456999999999999999999987 4568999988866
No 154
>PRK12839 hypothetical protein; Provisional
Probab=82.80 E-value=5.2 Score=43.74 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=45.5
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe----EEEEecCCc-EEEE-EEEEeccCCCch
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-ILSS-HLIIDAMGNFSP 95 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~----v~V~t~~g~-~~~A-RlVIDA~G~~Sp 95 (417)
+++...|...|.++|.+.|++|+.+|+++++..++++ |++...+++ ++.+ |-||-|+|..+-
T Consensus 210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 3567889999999999999999999999999875432 333333444 3444 777778877664
No 155
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=82.05 E-value=6.5 Score=43.09 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=52.4
Q ss_pred cccccceeeccCh--HHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE----EEecCC--cEEEEEEEEeccCCCch
Q 014843 25 GLKTFSILEFREP--AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV----LLLAEG--KILSSHLIIDAMGNFSP 95 (417)
Q Consensus 25 ~~~~~~~~~~Vdr--~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~----V~t~~g--~~~~ARlVIDA~G~~Sp 95 (417)
++...++...-|+ ..+...|.+++.+ .|..+++++.++++..+++.+. +...+| ..++||.||-|+|-.|-
T Consensus 117 g~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 117 GMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred CccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 3444455554443 5688888888877 4789999999999998766544 223345 36899999999999886
Q ss_pred h
Q 014843 96 V 96 (417)
Q Consensus 96 i 96 (417)
+
T Consensus 197 ~ 197 (580)
T TIGR01176 197 V 197 (580)
T ss_pred c
Confidence 4
No 156
>PRK10262 thioredoxin reductase; Provisional
Probab=81.98 E-value=9.8 Score=37.66 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=46.4
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
++...+.+.+.+.+...+.++..+ ++++++...+.+.+++. ..+++++.||-|+|...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 60 LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGD-SGEYTCDALIIATGASA 117 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEec-CCEEEECEEEECCCCCC
Confidence 567778888888888887777665 57788888888888764 34799999999999974
No 157
>PRK08401 L-aspartate oxidase; Provisional
Probab=81.81 E-value=5.3 Score=42.28 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEeccCCCchhhh
Q 014843 37 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK 98 (417)
Q Consensus 37 r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~G~~Spiar 98 (417)
-..+.+.|.+++.+.|++++.. .++.+..+++.++ |.+ +++.++|+-||-|+|..|..-.
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSGLFK 179 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcCCCC
Confidence 3578899999999999999876 7888877665554 444 5668999999999999987643
No 158
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=81.79 E-value=5 Score=44.28 Aligned_cols=67 Identities=9% Similarity=0.202 Sum_probs=49.2
Q ss_pred cceeeccCh--HHHHHHHHHHHhhcCcEEEcCceEEEEEE-ECCeEE-E---EecCCc--EEEEEEEEeccCCCch
Q 014843 29 FSILEFREP--AKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAV-L---LLAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 29 ~~~~~~Vdr--~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~-~~d~v~-V---~t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
.+++...|+ ..+...|.+++.+.|+++++++.++++.. +++.|+ | ...+|+ .++||.||.|+|-.+-
T Consensus 155 ~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 155 YRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred ceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 445444454 37889999999999999999999999987 333222 2 223454 6899999999987754
No 159
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=81.78 E-value=6.1 Score=41.21 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC--cEEEEEEEEeccCCCchhh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g--~~~~ARlVIDA~G~~Spia 97 (417)
.+.+.+.+.+.+.|.+++.++++++++.+++++.|++.+| +++.+..||-|.|..+...
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 4556677788889999999999999998888888876556 4799999999999987654
No 160
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=81.08 E-value=79 Score=36.48 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.9
Q ss_pred EEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEecc
Q 014843 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 90 (417)
Q Consensus 54 ~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~ 90 (417)
.|..+++|++|...+++|+|.+ +|++++|+.||=|.
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V~~-~G~~~~AD~VIvTv 483 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIVYA-GGQEFHGDMVLCTV 483 (808)
T ss_pred CcccCCeeEEEEEcCCeEEEEe-CCeEEEcCEEEECC
Confidence 3899999999999999998854 67789999999763
No 161
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=79.92 E-value=7 Score=42.69 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEec-CCc--EEEE-EEEEeccCCCchh
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPV 96 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~-~g~--~~~A-RlVIDA~G~~Spi 96 (417)
+...|...|.+++++.|++++.+++++++..+++.|+ |.+. +|+ +++| +-||-|+|..+.-
T Consensus 219 ~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 219 MGNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred ccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 4567888999999999999999999999987655433 3332 343 5776 6788899988774
No 162
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=79.88 E-value=7.2 Score=42.51 Aligned_cols=68 Identities=9% Similarity=0.205 Sum_probs=50.2
Q ss_pred cceeeccC--hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EE---ecCCc--EEEEEEEEeccCCCchh
Q 014843 29 FSILEFRE--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 29 ~~~~~~Vd--r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~---t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
.+++...| -..+...|.+++.+.|++|++++.++++..+++.|+ |. ..+|+ .++||-||-|+|-.+-+
T Consensus 108 ~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 108 ERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred eEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 35555443 246888899999999999999999999998654332 22 23454 68999999999998754
No 163
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=79.79 E-value=3.6 Score=42.06 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=45.6
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECC----eEEEEec----CCcEEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d----~v~V~t~----~g~~~~ARlVIDA~G~~S 94 (417)
..|..+-+||.--|.+.+..+..+++|++|+..++ ++.|.+. ++++++||-||-|.|...
T Consensus 92 p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 92 PSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred CCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 68999999998888777766999999999988876 4899884 346899999999999553
No 164
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.90 E-value=6.7 Score=43.00 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EE-EEe---cCCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLL---AEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~-V~t---~~g~--~~~ARlVIDA~G~~Spi 96 (417)
..|...|.+++.+.|+++++++.++++..++++ +. |.+ .+|+ .++||-||.|+|-.+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 468889999999999999999999999886433 22 322 2454 68999999999998754
No 165
>PLN02268 probable polyamine oxidase
Probab=78.89 E-value=3.7 Score=42.39 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=36.4
Q ss_pred hcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEecc
Q 014843 50 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 90 (417)
Q Consensus 50 ~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~ 90 (417)
..|..|..+++|++|...+++|+|++.+|+++.|+.||-|.
T Consensus 208 ~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~ 248 (435)
T PLN02268 208 AKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV 248 (435)
T ss_pred hccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence 34668999999999999999999998888889999999885
No 166
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.83 E-value=7.3 Score=42.56 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEEC----CeE---EE-EecCCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~----d~v---~V-~t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
..+...|.+++.+.|+++++++.++++..++ +.+ ++ ...+|+ .++||-||-|+|-.+-+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 5678889999999999999999999998765 222 22 223454 68999999999998754
No 167
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.77 E-value=6.7 Score=43.51 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe---cCCc--EEEEEEEEeccCCCchh
Q 014843 41 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 41 ~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t---~~g~--~~~ARlVIDA~G~~Spi 96 (417)
.+.|.+++.+.|++++.++.++++..+++.|+ |.+ .+|+ .+.||.||.|+|..+-+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 35666678788999999999999988765433 332 1353 68999999999997753
No 168
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=78.55 E-value=6.6 Score=43.76 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=50.1
Q ss_pred ccccceeeccCh--HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe---EEEEe-cCCc--EEEEEEEEeccCCCchh
Q 014843 26 LKTFSILEFREP--AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 26 ~~~~~~~~~Vdr--~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~---v~V~t-~~g~--~~~ARlVIDA~G~~Spi 96 (417)
.+..+++..-|. ..+...|.+++.+.|+++++++.++++..+++. +++.+ .+|+ .++||-||-|+|-.+.+
T Consensus 144 ~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 144 TKKWRTCYTADGTGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred cccceeEecCCCcHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 344444443332 345667888898999999999999999987654 34443 3554 57899999999977654
No 169
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=78.40 E-value=8.5 Score=41.91 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe--cCCc-EEEE-EEEEeccCCCc
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSS-HLIIDAMGNFS 94 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t--~~g~-~~~A-RlVIDA~G~~S 94 (417)
..+.+.|.+++.+.|++|+.+++|+++..+++.++ |.+ .++. ++++ |-||-|.|..+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 45777788899999999999999999998876443 333 2333 4777 56777888776
No 170
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.36 E-value=8.7 Score=40.19 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC---cEEEEEEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g---~~~~ARlVIDA~G~~Spi 96 (417)
.+.+.+.+++.+.|.+++.++++++++..++++.|.+.++ +++.+..||-|.|..+..
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 4556777778889999999999999998878888776555 579999999999988554
No 171
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=78.28 E-value=8.4 Score=40.33 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=49.2
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
+|+ .+.+.+.+++.+.|.+++.++++++++..++++.|.+.+|+++.+..||-|.|..+..
T Consensus 205 ~d~-~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 205 FDD-DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred cCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 443 3445667777788999999999999988778888877678889999999999987554
No 172
>PLN03000 amine oxidase
Probab=77.24 E-value=1.3e+02 Score=35.13 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=31.3
Q ss_pred EEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEecc
Q 014843 54 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 90 (417)
Q Consensus 54 ~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~ 90 (417)
.|..+++|++|...+++|.|++. +++++|+.||-|.
T Consensus 392 ~I~Ln~~Vt~I~~~~dgV~V~~~-~~~~~AD~VIvTV 427 (881)
T PLN03000 392 PILYEKTVQTIRYGSNGVKVIAG-NQVYEGDMVLCTV 427 (881)
T ss_pred CcccCCcEEEEEECCCeEEEEEC-CcEEEeceEEEcC
Confidence 48999999999999999999874 4589999999774
No 173
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=77.18 E-value=9.7 Score=40.27 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEE-EecCC--cEEEEEEEEeccCCC
Q 014843 37 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEG--KILSSHLIIDAMGNF 93 (417)
Q Consensus 37 r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V-~t~~g--~~~~ARlVIDA~G~~ 93 (417)
..++.+.|.+++.+.|+++..+++|++++.+++++++ .+.+| .+++|+.||-|+|..
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 3468888999998999999999999999988877664 34344 368999899899965
No 174
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.00 E-value=8.1 Score=42.44 Aligned_cols=67 Identities=10% Similarity=0.241 Sum_probs=49.0
Q ss_pred cceeeccCh--HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EE-EE---ecCCc--EEEEEEEEeccCCCch
Q 014843 29 FSILEFREP--AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL---LAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 29 ~~~~~~Vdr--~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~-V~---t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
.++....|. ..+...|.+++.+.|+++++++.++++..++++ |+ |. +.+|+ .+.||-||-|+|-.+-
T Consensus 138 ~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 138 QRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred ceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 344444332 358888899998999999999999999887643 22 22 23454 7899999999998874
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.52 E-value=12 Score=40.70 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=47.5
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
++...+.+++.+++.+.|.++. .++|+++...++.+.|.+.++ .+.++.||-|+|+.+
T Consensus 57 ~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 57 TTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 4667888899999988888875 678999988777778887544 688888999999975
No 176
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.25 E-value=12 Score=40.84 Aligned_cols=58 Identities=16% Similarity=0.336 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe-cCCc--EEEEE-EEEeccCCCch
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t-~~g~--~~~AR-lVIDA~G~~Sp 95 (417)
..|...|.+++++.|++++.++.|+++..+++.|+ |.+ .+|+ .++|| -||-|+|-.+-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 45778888999999999999999999998765433 322 2343 58884 56667776654
No 177
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=76.18 E-value=5.9 Score=42.63 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=51.7
Q ss_pred cChHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCe-EEEEecC---C--cEEEEEEE-EeccCCCchhhhh
Q 014843 35 REPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLI-IDAMGNFSPVVKQ 99 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~-v~V~t~~---g--~~~~ARlV-IDA~G~~Spiarq 99 (417)
||=-.|-+.|.+.+.+. |.++..+++|++|++.+|+ |.|++.+ | ++++||.| |+|-|+.=|+++.
T Consensus 178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqk 250 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQK 250 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHH
Confidence 77777888888888775 8999999999999999998 9998642 2 47999876 6666666666664
No 178
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=75.83 E-value=7.5 Score=40.46 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-E-EEEecCCc-----EEEEEEEEeccCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGN 92 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v-~V~t~~g~-----~~~ARlVIDA~G~ 92 (417)
..|-+.+.+.+.+.|++|..+++|++|+..+++ + .|.+.+|+ ++.|+-||-|...
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 456677777787889999999999999876665 3 25554444 7899999988754
No 179
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=75.60 E-value=9.1 Score=40.40 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeE-EEEecCC-----cEEEEEEEEeccCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGN 92 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v-~V~t~~g-----~~~~ARlVIDA~G~ 92 (417)
..|-+.|.+.+.+.|++|+.+++|++|..+++.+ .|.+.++ +++.|+.||-|.-.
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 4577778888888999999999999999988742 2222232 57899999977654
No 180
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=75.45 E-value=13 Score=39.25 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
+.+.+.+.+.+.|.+++.++++++++..++++.|.+.+|+++.+-.||-|.|..+...
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 4566777778899999999999999888888888776788899999999999886654
No 181
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=75.41 E-value=4.2 Score=43.73 Aligned_cols=50 Identities=24% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCCcEEEEEEEEecc
Q 014843 41 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAM 90 (417)
Q Consensus 41 ~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g~~~~ARlVIDA~ 90 (417)
-..+.+-++++|++|+.+..|.+|..+++.++ |..++|+++++|.||--.
T Consensus 267 s~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNA 317 (561)
T KOG4254|consen 267 SFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNA 317 (561)
T ss_pred HHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCC
Confidence 34566778889999999999999999985444 667799999999998543
No 182
>PLN02507 glutathione reductase
Probab=74.53 E-value=13 Score=39.82 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=50.5
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
+|+ .+.+.+.+.+.+.|.+++.++++++++.++++++|.+.+|+++.+-.||-|.|..+...
T Consensus 242 ~d~-~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 242 FDD-EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred cCH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 554 34566667777889999999999999988788888876778899999999999886653
No 183
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=74.25 E-value=12 Score=40.73 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe--c-CCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--A-EGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t--~-~g~--~~~ARlVIDA~G~~Spi 96 (417)
..+...|.+++.+.|++++++|.++++..+++.|+ |.+ . +|+ .++||-||-|+|-.+-+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 45778888889888999999999999998755433 322 1 333 68999999999988743
No 184
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=73.36 E-value=9.9 Score=41.86 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh----hcCcEEEcCceEEEEEEECCe----EEEEe-cCCc--EEEEEEEEeccCCCch
Q 014843 39 KLIEIVKKRFI----SLGGVIFEGYSVSSICTYENA----AVLLL-AEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 39 ~L~~~L~~ka~----~~Gg~i~~~t~v~~i~~~~d~----v~V~t-~~g~--~~~ARlVIDA~G~~Sp 95 (417)
.+...|.+++. +.|+++++++.++++..++++ +++.. .+|+ .++||.||.|+|-.+-
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 34444444443 347999999999999886543 22222 1343 6899999999998653
No 185
>PRK07512 L-aspartate oxidase; Provisional
Probab=73.30 E-value=7.7 Score=41.73 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhhc-CcEEEcCceEEEEEEECCeEE-EEec-CCc--EEEEEEEEeccCCCchh
Q 014843 37 PAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 37 r~~L~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~-V~t~-~g~--~~~ARlVIDA~G~~Spi 96 (417)
...+.+.|.+++.+. |++++.++.++++..+++.|+ |.+. +++ +++|+-||-|+|-.+..
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcCC
Confidence 456888888888774 899999999999987655333 3322 232 68999999999997643
No 186
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.23 E-value=12 Score=40.90 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=49.6
Q ss_pred ceeeccC--hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE--EE---ecCCc--EEEEEEEEeccCCCchh
Q 014843 30 SILEFRE--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LL---LAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 30 ~~~~~Vd--r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~--V~---t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
+++.-.| -..+...|.+++.+.|+++++++.++++..++++-+ |. ..+|+ .++||-||-|+|-.+-+
T Consensus 116 R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 116 RTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred eEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 4444444 356888899999999999999999999998644322 22 23454 68999999999988754
No 187
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=73.11 E-value=15 Score=38.48 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=46.9
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEec---CCcEEEEEEEEeccCCCchhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~---~g~~~~ARlVIDA~G~~Spia 97 (417)
.|++ +-..+.+.+.+.|.+++.++++++++.+++.+.|++. +++++.+..||-|.|..+...
T Consensus 205 ~d~~-~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 205 EEPE-ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred cCHH-HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 4443 4566677777889999999999999887776666543 235899999999999876543
No 188
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=72.95 E-value=11 Score=41.88 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECC-eEE-EE--e-cCCc--EEEEEEEEeccCCCchh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LL--L-AEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~v~-V~--t-~~g~--~~~ARlVIDA~G~~Spi 96 (417)
..+...|.+++.+.|+++++++.++++..+++ .++ |. . .+|+ .++||-||-|+|-.+-.
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 45788889999889999999999999887643 222 22 2 2453 68999999999988743
No 189
>PLN02568 polyamine oxidase
Probab=72.70 E-value=11 Score=41.17 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccC
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 91 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G 91 (417)
.|.+.|.+.+. +..|+.+++|++|...+++|.|++.+|++++|+.||-|.=
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 35555555442 3579999999999999999999998888899999998743
No 190
>PRK08071 L-aspartate oxidase; Provisional
Probab=72.56 E-value=9.9 Score=40.86 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEec--CCc--EEEEEEEEeccCCCch
Q 014843 37 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 37 r~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~--~g~--~~~ARlVIDA~G~~Sp 95 (417)
...+.+.|.+++. .|+++++++.++++..+++.+. |.+. +|+ .++||.||.|+|..+.
T Consensus 129 g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 129 GKNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 3457778888776 6899999999999987665433 3332 343 6899999999999774
No 191
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=72.02 E-value=12 Score=40.99 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=49.1
Q ss_pred ceeeccCh--HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE--EE---ecCCc--EEEEEEEEeccCCCchh
Q 014843 30 SILEFREP--AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LL---LAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 30 ~~~~~Vdr--~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~--V~---t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
++..-.|+ ..+...|.+++.+.|+++++++.++++..++++-+ |. ..+|+ .++||-||-|+|-.+-+
T Consensus 133 r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 133 RTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred eeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 44444442 56888899999889999999999999998644322 22 22454 68999999999988754
No 192
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=70.89 E-value=15 Score=40.20 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEe-cCCc--EEEE-EEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t-~~g~--~~~A-RlVIDA~G~~Spi 96 (417)
.|...|.+++++.|++|+.+|+++++..+++.|+ |.. .+|+ .++| |-||=|+|-++--
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 4667788889999999999999999987543232 222 2343 4566 5788898888754
No 193
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=69.44 E-value=20 Score=39.06 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEec-CCc--EEEEE-EEEeccCCCch
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~-~g~--~~~AR-lVIDA~G~~Sp 95 (417)
..+...|.+++.+.|++++.+++++++..+++.|+ |... +++ .++|| -||-|+|-.+.
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 34667777888889999999999999998766444 3322 343 58895 46667776655
No 194
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=69.11 E-value=17 Score=37.60 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
..+.+.+.+.+.+.|.+++.+++++++..+++...|.+ ++.++.+..||-|.|..+.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcC
Confidence 44666788888889999999999999965444344555 4557999999999998653
No 195
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=68.99 E-value=20 Score=37.24 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
.+...+.+.+.+.|.++..++++++++.+++.++|.+ +|+++.+..||-|.|..+..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 4556666777888999999999999988777777765 56789999999999988553
No 196
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=68.78 E-value=8.8 Score=39.93 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-EEecCC--cEEEEEEEEeccCCC
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF 93 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V~t~~g--~~~~ARlVIDA~G~~ 93 (417)
++.+.|..++++.||.+.-+-+|.+++.++++|+ |.|++. ..++|+-.|=|+|++
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence 5678888999999999999999999999999887 667653 478999999999977
No 197
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=66.85 E-value=23 Score=37.91 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=49.1
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCchh
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
|+..+|+ .+-+.+.+++.+.|.+++.++.++++...+++ ..|.+.+|+++.+-.||-|.|..+..
T Consensus 225 il~~~d~-~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 225 ILRGFDS-TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred cccccCH-HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 3444553 44466777788899999999999999876554 45665567789999999999988654
No 198
>PRK14727 putative mercuric reductase; Provisional
Probab=65.67 E-value=26 Score=37.14 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=48.4
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
+|++ +-+.+.+.+.+.|.+++.+++++.++..++.++|.+.++ ++.+..||-|.|..+...
T Consensus 226 ~d~~-~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 226 EDPL-LGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred chHH-HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 4443 556677778889999999999999988888887876544 688999999999987554
No 199
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=65.59 E-value=23 Score=38.86 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EE-EEe-cCCc--EEEEE-EEEeccCCCch
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLL-AEGK--ILSSH-LIIDAMGNFSP 95 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~-V~t-~~g~--~~~AR-lVIDA~G~~Sp 95 (417)
+...|.+.+.+.|++|+.+|+++++..++++ |+ |.. .+++ +++|| -||-|+|.++-
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 5556777888899999999999999987543 22 222 2343 58896 47778887763
No 200
>PRK07208 hypothetical protein; Provisional
Probab=65.23 E-value=21 Score=37.44 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE--EEe--cCCc--EEEEEEEEeccCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLL--AEGK--ILSSHLIIDAMGN 92 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~--V~t--~~g~--~~~ARlVIDA~G~ 92 (417)
..|-+.|.+++.+.|++|+.+++|++|..++++++ |.. .+|+ ++.|+.||-|.-.
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 46778888888889999999999999999988753 222 2343 6899999987654
No 201
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.77 E-value=28 Score=36.28 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
.+.+.+.+.+.+.|.+++.++++++++.+++.++|++.++ ++.+-.||-|.|..+..
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 3456677788889999999999999998877777776444 58899999999988654
No 202
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=64.20 E-value=30 Score=36.42 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=49.6
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCC-cEEEEEEEEeccCCCchhh
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g-~~~~ARlVIDA~G~~Spia 97 (417)
++..+|++ +.+.+.+++.+.|.++..++.+++++.+.++ +.|...+| +++.+-.||-|.|..+...
T Consensus 201 il~~~d~~-~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 201 VLRSFDSM-ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred CCcccCHH-HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 44445554 4566777788899999999999999876554 56666566 5789999999999886653
No 203
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.19 E-value=30 Score=36.43 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=47.1
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEec--CC--cEEEEEEEEeccCCCchh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~--~g--~~~~ARlVIDA~G~~Spi 96 (417)
.|+ .+-+.+.+++.+.|.+++.+++++++..+++.+.|... +| +++.+..||-|.|..+..
T Consensus 211 ~d~-~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 211 EDA-EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred cCH-HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 443 35567778888899999999999999877666655543 45 379999999999988655
No 204
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=64.05 E-value=29 Score=36.72 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC--C--cEEEEEEEEeccCCCchhh
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~--g--~~~~ARlVIDA~G~~Spia 97 (417)
..+.+.+.+++.+.|.+++.++++++++..++++.|...+ | +++.+-.||-|.|..+...
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 3456677778888999999999999999887777766433 3 4689999999999886643
No 205
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=63.13 E-value=20 Score=37.83 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCcEEEcCceEEEEE--EECCeEEEEecCCc--EEEEEEEEeccCCCc
Q 014843 42 EIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNFS 94 (417)
Q Consensus 42 ~~L~~ka~~~Gg~i~~~t~v~~i~--~~~d~v~V~t~~g~--~~~ARlVIDA~G~~S 94 (417)
+.+.+++.+.|++++.++. +.+. ..++.++|++.+|+ +++++.||-|+|+.+
T Consensus 96 ~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 96 ADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence 3455667778888887753 3333 56778888876665 799999999999985
No 206
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=62.83 E-value=26 Score=38.75 Aligned_cols=58 Identities=16% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhc--------C-----cEEEcCceEEEEEEECCeEE-E---EecCCc--EEEEEEEEeccCCCch
Q 014843 38 AKLIEIVKKRFISL--------G-----GVIFEGYSVSSICTYENAAV-L---LLAEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~--------G-----g~i~~~t~v~~i~~~~d~v~-V---~t~~g~--~~~ARlVIDA~G~~Sp 95 (417)
..+.+.|.+++.+. | ++++.++.++++..+++.++ | ...+|+ .++||-||.|+|..+-
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 45667777777665 7 89999999999987755432 2 222453 6899999999997543
No 207
>PRK06370 mercuric reductase; Validated
Probab=62.59 E-value=33 Score=35.97 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEec---CCcEEEEEEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~---~g~~~~ARlVIDA~G~~Spi 96 (417)
.+.+.+.+++.+.|.+++.++++.+++..++++.|... ++.++.+..||-|.|..+..
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 35566777788899999999999999887777655432 24579999999999988554
No 208
>PRK14694 putative mercuric reductase; Provisional
Probab=61.74 E-value=35 Score=35.98 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
.+.+.+.+++.+.|.++..++++..++.+++.+.|.+. +.++.+..||-|.|..+..
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETN-AGTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CCEEEeCEEEEccCCCCCc
Confidence 45677788888899999999999999877776777664 4479999999999988654
No 209
>PRK09077 L-aspartate oxidase; Provisional
Probab=61.61 E-value=33 Score=37.14 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=49.5
Q ss_pred ccccceeeccCh--HHHHHHHHHHHhh-cCcEEEcCceEEEEEEEC------CeEE-EE--e-cCCc--EEEEEEEEecc
Q 014843 26 LKTFSILEFREP--AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYE------NAAV-LL--L-AEGK--ILSSHLIIDAM 90 (417)
Q Consensus 26 ~~~~~~~~~Vdr--~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~------d~v~-V~--t-~~g~--~~~ARlVIDA~ 90 (417)
+..+++...-|. ..+...|.+++.+ .|++|+.++.++++...+ +.++ |. . .+|+ .++||.||.|+
T Consensus 124 ~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAT 203 (536)
T PRK09077 124 HSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLAT 203 (536)
T ss_pred ccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECC
Confidence 334455544332 4677888888876 488999999999998753 3322 32 2 2343 68999999999
Q ss_pred CCCchhh
Q 014843 91 GNFSPVV 97 (417)
Q Consensus 91 G~~Spia 97 (417)
|..+.+-
T Consensus 204 GG~~~~~ 210 (536)
T PRK09077 204 GGASKVY 210 (536)
T ss_pred CCCCCCC
Confidence 9988543
No 210
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=61.03 E-value=37 Score=35.90 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=46.2
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEec---C--CcEEEEEEEEeccCCCch
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~---~--g~~~~ARlVIDA~G~~Sp 95 (417)
+|++ +.+.+.+++.+.|.+++.++++++++.+++++.+... + ++++.+-.||-|.|..+.
T Consensus 213 ~d~~-~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 213 TDTE-TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred CCHH-HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 4543 5567778888899999999999999887777765432 2 357999999999998844
No 211
>PRK07846 mycothione reductase; Reviewed
Probab=60.74 E-value=35 Score=35.99 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=46.4
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
.+|++. .+.+. +..+.|.+++.++++++++.+++++.|.+.+|+++.+-.||-|.|..+...
T Consensus 204 ~~d~~~-~~~l~-~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 204 HLDDDI-SERFT-ELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred ccCHHH-HHHHH-HHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 355553 33333 344567899999999999887777888876788899999999999886553
No 212
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=59.87 E-value=19 Score=37.33 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEec-CCcEEE--EEEEEeccCCCch
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFSP 95 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~-~g~~~~--ARlVIDA~G~~Sp 95 (417)
.+.....+++.+.|.+++.+++|+++..+++.+.+... +++++. ++.||-|+|+...
T Consensus 57 ~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 57 TMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred HhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 34444556677788899999999999988888777642 355666 8989999999753
No 213
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.35 E-value=18 Score=36.33 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=43.8
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
++.+.+...+.+.+.+.|+++.. .+|+++..+++ +|.+.+|++++...||-|+|+....
T Consensus 51 ~~~~~~~~~~~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 51 YSLDEIRIDLRRLARQAGARFVI-AEATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPL 109 (364)
T ss_pred CCHHHhcccHHHHHHhcCCEEEE-EEEEEEecccC--EEEECCCCcccccEEEEccCCCCCC
Confidence 45555655566677778888776 58999988766 4556677789999999999988543
No 214
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=59.31 E-value=43 Score=36.52 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=46.5
Q ss_pred eccChHHHHHHHHHHHhhcCc--EEEcCceEEEEEEECC-----eEEEEecC-CcEE--EEEEEEeccCCCc
Q 014843 33 EFREPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GKIL--SSHLIIDAMGNFS 94 (417)
Q Consensus 33 ~~Vdr~~L~~~L~~ka~~~Gg--~i~~~t~v~~i~~~~d-----~v~V~t~~-g~~~--~ARlVIDA~G~~S 94 (417)
.......+.++|..=|..-|- .|..+|+|++++..+| .|.|++.+ |++- .-..||-|+|+.+
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 356789999999998887555 7999999999999875 69998864 4321 2234777999986
No 215
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=58.20 E-value=44 Score=35.21 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=40.8
Q ss_pred HhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 48 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 48 a~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
..+.|.+++.++++++++.+++++.|++.+|+++.+..||-|.|..+..
T Consensus 219 ~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 219 IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 3456789999999999998777888877677789999999999988554
No 216
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=58.16 E-value=29 Score=36.12 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.+.+.+.+++.+.|.+++.+++++.+. ++. |.+.+|+++.+-+||-|.|..+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEccCCCC
Confidence 567788888889999999999999875 344 4455788999999999999653
No 217
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=57.35 E-value=47 Score=34.91 Aligned_cols=58 Identities=16% Similarity=0.370 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC-cEEEEEEEEeccCCCchh
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g-~~~~ARlVIDA~G~~Spi 96 (417)
.+.+.+.+.+.+.|.+++.++++++++.+++.+++.+.++ .++.+-+||-|.|..+.+
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 3556677778889999999999999987766666654322 369999999999988654
No 218
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=55.86 E-value=46 Score=35.74 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhh-cCcEEEcCceEEEEEEECCeEE-EEe-cCCc--EEEEE--EEEeccCC
Q 014843 39 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH--LIIDAMGN 92 (417)
Q Consensus 39 ~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~v~-V~t-~~g~--~~~AR--lVIDA~G~ 92 (417)
.|...+.+++.+ .|++|+.+|+++++..+++.|+ |.. .+|+ +++|| +||.+.|.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 355666666655 5899999999999988755443 222 2343 68996 66655554
No 219
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=55.74 E-value=19 Score=38.12 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCc--EEEcCceEEEEEEEC--CeEEEEecCCcE--EEEEEEEeccCCCc
Q 014843 40 LIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGNFS 94 (417)
Q Consensus 40 L~~~L~~ka~~~Gg--~i~~~t~v~~i~~~~--d~v~V~t~~g~~--~~ARlVIDA~G~~S 94 (417)
+.+++.+.+...|. .|..++.|..+.... +.|.|++++|.+ ++||.||-|+|+.|
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 67777777777655 566666666666555 489999987654 66999999999964
No 220
>PRK13748 putative mercuric reductase; Provisional
Probab=55.65 E-value=48 Score=35.64 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
+-+.+.+.+.+.|.+++.+++++.++.+++.++|.+.++ ++.+-.||-|.|..+..
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 456667777789999999999999988777777776444 69999999999988655
No 221
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=55.35 E-value=42 Score=34.68 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
.+.+.+.+++.+.|.++..+++++++..++ .+ +...+|+++.+..||-|.|..+.
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCC
Confidence 455667778888999999999999987543 33 34446788999999999998754
No 222
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=55.01 E-value=17 Score=32.62 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHhhcCcEEEcCceEEEEEEECCeE-----EE---EecCCcEEEEEEEEeccCCC
Q 014843 43 IVKKRFISLGGVIFEGYSVSSICTYENAA-----VL---LLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 43 ~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v-----~V---~t~~g~~~~ARlVIDA~G~~ 93 (417)
-+.+++.+.+.++..++++.++......+ .+ .+.++.++.++.||-|+|..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 44555567888998899999998888742 33 22345689999999999966
No 223
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=54.88 E-value=16 Score=39.24 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=54.2
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCC
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~ 93 (417)
|=|+.|-++-.++.++.|..+.-+..|.++.+....++++.+||.++++-+||-|.|-.
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCC
Confidence 44788889999999999999999999999999999999999999999999999999975
No 224
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=54.87 E-value=12 Score=41.23 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=49.5
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe--EEEEecCCcEEEEEEEEeccCCC
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~--v~V~t~~g~~~~ARlVIDA~G~~ 93 (417)
..|+......+++...+...--+.+..|.++.++++. +.|.|.+|..|.||.||-++|++
T Consensus 96 QaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 96 QADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred hhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 4889999999999998866666667788888886663 45778889999999999999986
No 225
>PTZ00052 thioredoxin reductase; Provisional
Probab=53.50 E-value=53 Score=35.17 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=47.7
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
+|++ +.+.+.+++.+.|.+++.++.+..+...++.+.|...+|+++.+-.||-|.|..+..
T Consensus 220 ~d~~-~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 220 FDRQ-CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred CCHH-HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 4433 446677777788999999999999987666666766677788999999999988654
No 226
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=53.24 E-value=37 Score=34.10 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.+.+.+.+.+.+.|.++..+++++.+. ++ .|.+.+|+++.+.+||-|.|..+
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCCh
Confidence 355677777888999999999999874 33 35555678899999999999764
No 227
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=52.65 E-value=42 Score=40.04 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=39.7
Q ss_pred HHHHHHHHHhh---cCcEEEcCceEEEEEEECC------------eEEEEec---CCc--EEEEEEEEeccCCCch
Q 014843 40 LIEIVKKRFIS---LGGVIFEGYSVSSICTYEN------------AAVLLLA---EGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 40 L~~~L~~ka~~---~Gg~i~~~t~v~~i~~~~d------------~v~V~t~---~g~--~~~ARlVIDA~G~~Sp 95 (417)
+...+.+++.+ .|++|+.+|+++++..+++ |++++.. +|+ .++||-||-|+|-++-
T Consensus 546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 44555555544 5899999999999998641 2223332 454 6899999999998774
No 228
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=52.11 E-value=50 Score=31.99 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHhhcCcEEEcCceEEEEEEE--CC---eEEEEecCCc----EEEEEEEEeccCC-Cchhh
Q 014843 36 EPAKLIEIVKKRFISLGGVIFEGYSVSSICTY--EN---AAVLLLAEGK----ILSSHLIIDAMGN-FSPVV 97 (417)
Q Consensus 36 dr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~--~d---~v~V~t~~g~----~~~ARlVIDA~G~-~Spia 97 (417)
.......+|..-....|.+|+.++.|++|.++ +. +|++...++. .+.+|.||=|.|+ .||-.
T Consensus 191 r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 191 RSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp BBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred ceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 33444555554433458899999999999886 33 2334433333 6789999999996 44433
No 229
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=51.84 E-value=59 Score=34.27 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEE-ECCeEEE-EecCC--cEEEEEEEEeccCCCchh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVL-LLAEG--KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~-~~d~v~V-~t~~g--~~~~ARlVIDA~G~~Spi 96 (417)
+-+.+.+++.+.|.+++.+++++++.. .++++.+ .+.+| +++.+-.||-|.|..+..
T Consensus 223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 456677778888999999999999976 2444443 34455 369999999999998654
No 230
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=50.74 E-value=59 Score=35.22 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHHHh----hcCcEEEcCceEEEEEEECCeEE-EEe---cC--------------C-cEEEEEEEEeccCCCch
Q 014843 39 KLIEIVKKRFI----SLGGVIFEGYSVSSICTYENAAV-LLL---AE--------------G-KILSSHLIIDAMGNFSP 95 (417)
Q Consensus 39 ~L~~~L~~ka~----~~Gg~i~~~t~v~~i~~~~d~v~-V~t---~~--------------g-~~~~ARlVIDA~G~~Sp 95 (417)
.+...|.+++. ..|++++.+|+++++..+++.|+ |.+ .+ + .+++||-||=|+|-++-
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 45566666554 23589999999999998755333 321 11 1 26899999999998875
Q ss_pred h
Q 014843 96 V 96 (417)
Q Consensus 96 i 96 (417)
-
T Consensus 229 n 229 (549)
T PRK12834 229 N 229 (549)
T ss_pred C
Confidence 4
No 231
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=50.44 E-value=32 Score=35.53 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=38.7
Q ss_pred HHHH-hhcCcEEEcCceEEEEEEECCeEEEEec-CCcEEE--EEEEEeccCCCc
Q 014843 45 KKRF-ISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS 94 (417)
Q Consensus 45 ~~ka-~~~Gg~i~~~t~v~~i~~~~d~v~V~t~-~g~~~~--ARlVIDA~G~~S 94 (417)
.+++ .+.|.+++.+++|+++...+..+.+... ++++++ ++.||-|+|+..
T Consensus 50 ~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 50 PEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HHHHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 3444 6678999889999999887777777653 245777 999999999864
No 232
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=49.75 E-value=36 Score=36.08 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=48.8
Q ss_pred ceeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCc-EEEEEEEEeccCCC-chhhhhh
Q 014843 30 SILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI 100 (417)
Q Consensus 30 ~~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~-~~~ARlVIDA~G~~-Spiarql 100 (417)
+|+..++ ++|.++..+.+.+.|.++..++.|+.|+. ++++++ +|+ ++.+..+|=|.|.. ||+.+.+
T Consensus 202 ~ILp~~~-~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~v~~~--~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 202 RILPMFP-PKLSKYAERALEKLGVEVLLGTPVTEVTP--DGVTLK--DGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred hhccCCC-HHHHHHHHHHHHHCCCEEEcCCceEEECC--CcEEEc--cCCeeEecCEEEEcCCCcCChhhhhc
Confidence 3444443 56777888888889999999999998765 445544 455 59999999999986 4566653
No 233
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=47.48 E-value=57 Score=37.17 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
.-+.+.+...+.|.+++.++.++.+..++....|...+|+++.+-+||-|.|..+..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCc
Confidence 345667777789999999999998876554555676788899999999999988543
No 234
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=47.06 E-value=52 Score=35.32 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=41.1
Q ss_pred HHHHHHHHHh-hcCcEEEcCceEEEEEEECCeEE-EEec-CCc---EEEEEEEEeccCC-Cchhhhhh
Q 014843 40 LIEIVKKRFI-SLGGVIFEGYSVSSICTYENAAV-LLLA-EGK---ILSSHLIIDAMGN-FSPVVKQI 100 (417)
Q Consensus 40 L~~~L~~ka~-~~Gg~i~~~t~v~~i~~~~d~v~-V~t~-~g~---~~~ARlVIDA~G~-~Spiarql 100 (417)
...+| ..++ ..|.+|+.++.|++|.++++.++ |++. ++. ...+|.||-|.|+ .||-.-+.
T Consensus 196 ~~~~l-~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~ 262 (532)
T TIGR01810 196 ARAYL-HPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL 262 (532)
T ss_pred HHHHh-hhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh
Confidence 44454 4455 46789999999999999866433 4332 222 3589999999998 77765543
No 235
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=44.70 E-value=44 Score=34.89 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred ccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe-----EEEEecCCcEEEEEEEEeccCCCchhhhhh
Q 014843 34 FREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVVKQI 100 (417)
Q Consensus 34 ~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-----v~V~t~~g~~~~ARlVIDA~G~~Spiarql 100 (417)
.||--.+-..+.|++...|+.+..+.++.++....+. ++|....+++++++.||-+.|-.|--..-+
T Consensus 192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 4888888889999999999999999999999887764 455543478999999999999887655443
No 236
>PLN02815 L-aspartate oxidase
Probab=43.56 E-value=71 Score=35.32 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=47.5
Q ss_pred cccceeeccC--hHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECCe----EE-EE---ecCCc--EEEEEEEEeccCCC
Q 014843 27 KTFSILEFRE--PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA----AV-LL---LAEGK--ILSSHLIIDAMGNF 93 (417)
Q Consensus 27 ~~~~~~~~Vd--r~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d~----v~-V~---t~~g~--~~~ARlVIDA~G~~ 93 (417)
...++...-| -..+...|.+++.+ .|.+|++++.++++..++++ |+ |. ..+|+ .++||-||=|+|-.
T Consensus 142 s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 142 SHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred ccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 3335543323 34577788888876 48899999999999886432 21 22 22453 67999999999977
Q ss_pred chh
Q 014843 94 SPV 96 (417)
Q Consensus 94 Spi 96 (417)
+-+
T Consensus 222 g~~ 224 (594)
T PLN02815 222 GHI 224 (594)
T ss_pred eee
Confidence 644
No 237
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=43.53 E-value=2.8e+02 Score=29.80 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEe-cCCcEEEEEEEEeccC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAMG 91 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t-~~g~~~~ARlVIDA~G 91 (417)
+-=|.+++--|. .||...-++++.++...+++.++.. .+|++++||.||....
T Consensus 233 ELpQ~FcRl~AV-~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dps 286 (438)
T PF00996_consen 233 ELPQAFCRLSAV-YGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPS 286 (438)
T ss_dssp HHHHHHHHHHHH-TT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGG
T ss_pred cHHHHHHHHhhh-cCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCc
Confidence 334555555554 5889999999999999877666432 3688999999995433
No 238
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=42.82 E-value=78 Score=32.14 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=39.6
Q ss_pred ChHHHHHH-HHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 36 EPAKLIEI-VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 36 dr~~L~~~-L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
+++.+... ..+.+.+.|.+++.+++|+++..+.. +|.+ +++++..+.||-|+|+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 55 RADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred CHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 44444432 22345567899999999999887654 4444 466899999999999874
No 239
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=41.12 E-value=1.1e+02 Score=32.65 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=47.5
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCC---cEEEEEEEEeccCCCchh
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g---~~~~ARlVIDA~G~~Spi 96 (417)
++..+|++ +-+.+.+.+.+.|.+++.++.+..+...++.+.|+..++ +++.+-.||-|.|..+..
T Consensus 214 ~l~~~d~~-~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 214 LLRGFDQD-CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred cccccCHH-HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 44445543 456677778888999999999999987666666654443 378999999999987544
No 240
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=39.94 E-value=94 Score=34.60 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCcEEEcCceEEEEEEECC------eEEEE-ecCCc--EEEEEEEEeccCCCc
Q 014843 39 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN------AAVLL-LAEGK--ILSSHLIIDAMGNFS 94 (417)
Q Consensus 39 ~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d------~v~V~-t~~g~--~~~ARlVIDA~G~~S 94 (417)
.+...+...+.+.++++++++.++++..+++ |+++. ..+|+ .++||.||-|+|-.+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 3344444555666789999999999998652 23332 23454 689999999999875
No 241
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=39.42 E-value=95 Score=32.39 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCc--EEEEEEEEeccCCCc
Q 014843 43 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 94 (417)
Q Consensus 43 ~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~--~~~ARlVIDA~G~~S 94 (417)
.+.+++.+.|.++..++. .. +.++.+.|.+.+|+ +++++.||-|+|+..
T Consensus 99 ~~~~~~~~~~v~~~~g~~-~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 99 VRRGQYERNRVDLIQGRA-RF--VDPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred HHHHHHHHCCCEEEEEEE-EE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 355566778888877642 22 35567778776664 799999999999874
No 242
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=68 Score=32.02 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=51.7
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhhhhhc
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRS 102 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiarql~~ 102 (417)
+.-..|-+..++|+..-|.+|..+ +|.++...+...+|.| +.+.++|+-||-|.|+. ||++..
T Consensus 67 i~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAs---AkRl~~ 129 (322)
T KOG0404|consen 67 ITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGAS---AKRLHL 129 (322)
T ss_pred cccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccc---eeeeec
Confidence 345678888999999999998866 5899999999999988 45689999999999976 566533
No 243
>PLN02507 glutathione reductase
Probab=37.77 E-value=1e+02 Score=32.98 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCc--EEEEEEEEeccCCCc
Q 014843 44 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 94 (417)
Q Consensus 44 L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~--~~~ARlVIDA~G~~S 94 (417)
+.+.+.+.|.++..+ ++. .++++.+.|++.+|+ +|+++.||-|+|+.+
T Consensus 130 ~~~~l~~~gV~~i~g-~a~--~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGK--IVGPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred HHHHHHhCCcEEEEE-EEE--EecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 334455577777766 222 345667888876665 689999999999875
No 244
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.10 E-value=1.2e+02 Score=33.44 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhhcC----cEEEcCceEEEEEEECCeEE----EEec-CCc--EEEEEEEEeccCCCchh
Q 014843 37 PAKLIEIVKKRFISLG----GVIFEGYSVSSICTYENAAV----LLLA-EGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 37 r~~L~~~L~~ka~~~G----g~i~~~t~v~~i~~~~d~v~----V~t~-~g~--~~~ARlVIDA~G~~Spi 96 (417)
-..+...|.+++.+.| .++++++.++++..++++.+ +... +++ .++||-||-|+|-.+-+
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 4457777877776543 67999999999998644322 2222 343 58999999999988753
No 245
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=36.60 E-value=1.1e+02 Score=31.87 Aligned_cols=62 Identities=13% Similarity=-0.046 Sum_probs=43.2
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEe--------cCCcEEEEEEEEeccCCCc
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t--------~~g~~~~ARlVIDA~G~~S 94 (417)
....+.+.+..-+.+.+...|.++ ...+|++|..+++.+++.+ .+|.++....||-|.|+..
T Consensus 56 ~g~~~~~~~~~~~~~~~~~~~~~~-i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 56 TGTLEFRSICEPVRPALAKLPNRY-LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred ccCCChHHhHHHHHHHhccCCeEE-EEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc
Confidence 333454544444556666666654 4578999999888887732 2456899999999999985
No 246
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=35.67 E-value=43 Score=33.08 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=36.3
Q ss_pred hhhcccccceeec----cC-----hHHHHHHHHHHHhhcCcEEE-cCceEEEEEEECCeEE
Q 014843 22 VKSGLKTFSILEF----RE-----PAKLIEIVKKRFISLGGVIF-EGYSVSSICTYENAAV 72 (417)
Q Consensus 22 ~~~~~~~~~~~~~----Vd-----r~~L~~~L~~ka~~~Gg~i~-~~t~v~~i~~~~d~v~ 72 (417)
|+--+|++.|+-| || |..|++|+++.|...|+.|. --+-|.+.+.-+.|++
T Consensus 159 cMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~ 219 (291)
T KOG2355|consen 159 CMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLV 219 (291)
T ss_pred HHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEE
Confidence 4556777787765 44 88999999999999998554 4445566666666654
No 247
>PRK07395 L-aspartate oxidase; Provisional
Probab=34.87 E-value=70 Score=34.94 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhh-cCcEEEcCceEEEEEEEC-Ce-EE-EEe-cCCc--EEEEEEEEeccCCCch
Q 014843 38 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYE-NA-AV-LLL-AEGK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~-d~-v~-V~t-~~g~--~~~ARlVIDA~G~~Sp 95 (417)
..+...|.+++.+ .|++|+.++.++++..++ ++ ++ |.+ .+|+ .++||-||-|+|-.+.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 4577788888875 589999999999998864 22 21 222 2454 4899999999998643
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=34.14 E-value=1.4e+02 Score=34.63 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCcEEEcCceEEEEEEECC--eEEEEecCCcEEEEEEEEeccCCCchh
Q 014843 42 EIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 42 ~~L~~ka~~~Gg~i~~~t~v~~i~~~~d--~v~V~t~~g~~~~ARlVIDA~G~~Spi 96 (417)
+.+.+++.+.|.+++.++.++.+...++ ...|...+|+++.+-+||-|.|..+..
T Consensus 191 ~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 191 EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 5677778889999999999999976532 344666678899999999999988664
No 249
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.74 E-value=1.1e+02 Score=32.47 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=32.3
Q ss_pred HHhhcCcEEEcCceEEEEEEECCeEEEEecCC--cEEEEEEEEeccCCCc
Q 014843 47 RFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS 94 (417)
Q Consensus 47 ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g--~~~~ARlVIDA~G~~S 94 (417)
.+.+.|.+++.++.. ..+++.+.|++.+| .+++++.||-|+|+..
T Consensus 102 ~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 102 MAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred HHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 455678888877532 24566777876555 4799999999999864
No 250
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=33.48 E-value=83 Score=32.91 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=38.6
Q ss_pred HHHH-hhcCcEEEcCceEEEEEEECCeEEEEecC-Cc--EEEEEEEEeccCCCch
Q 014843 45 KKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFSP 95 (417)
Q Consensus 45 ~~ka-~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~-g~--~~~ARlVIDA~G~~Sp 95 (417)
.+++ .+.|.+++.+++|++|..++..+.+.+.+ ++ ++..+.||-|+|+...
T Consensus 64 ~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 64 PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred HHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 3444 34688999999999999998888887642 23 4677888999999853
No 251
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=33.40 E-value=86 Score=32.15 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=35.8
Q ss_pred HhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 48 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 48 a~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
..+.|.+++.++.|+.+..+... |.+.+|+++.+..||-|+|+..
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCCC
Confidence 34578899999999999877543 3444678899999999999985
No 252
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=32.54 E-value=1.5e+02 Score=28.14 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=36.7
Q ss_pred HHHHHHHHhhc-CcEEEcCceEEEEEEECCeEEEEe---cC--CcEEEEEEEEeccCCCc
Q 014843 41 IEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLL---AE--GKILSSHLIIDAMGNFS 94 (417)
Q Consensus 41 ~~~L~~ka~~~-Gg~i~~~t~v~~i~~~~d~v~V~t---~~--g~~~~ARlVIDA~G~~S 94 (417)
...+.+++.+. |.+++.++.++++..++....|.. .+ ++++.+..||-|.|..+
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 45566677776 899999999999976543222322 12 34788888998888653
No 253
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.96 E-value=1.3e+02 Score=34.80 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE-E---EecCCc--EEEEEEEEeccCCCchh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-L---LLAEGK--ILSSHLIIDAMGNFSPV 96 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~-V---~t~~g~--~~~ARlVIDA~G~~Spi 96 (417)
|.+.+.++....+..+.+++.++++..+++.++ | .+.+|+ .++||-||-|+|-.+-+
T Consensus 145 L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 145 LYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred HHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 444444444445678999998888877655332 2 233454 58999999999987643
No 254
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=31.67 E-value=71 Score=34.86 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=57.3
Q ss_pred cccccceeeccC--hHHHHHHHHHHHhh-cCcEEEcCceEEEEEEECC-eE---EEEecCC--cEEEEEEEEeccCCCch
Q 014843 25 GLKTFSILEFRE--PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN-AA---VLLLAEG--KILSSHLIIDAMGNFSP 95 (417)
Q Consensus 25 ~~~~~~~~~~Vd--r~~L~~~L~~ka~~-~Gg~i~~~t~v~~i~~~~d-~v---~V~t~~g--~~~~ARlVIDA~G~~Sp 95 (417)
++..++|+-.=| =......|.+++.+ .+.++++++.+.++..+++ ++ .+...++ .+++|+-||=|+|-.+-
T Consensus 118 gHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ 197 (518)
T COG0029 118 GHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG 197 (518)
T ss_pred ccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcc
Confidence 466777877633 35677888889987 8899999999999999998 33 3332223 47999999999998877
Q ss_pred hhhh
Q 014843 96 VVKQ 99 (417)
Q Consensus 96 iarq 99 (417)
+=+.
T Consensus 198 ly~~ 201 (518)
T COG0029 198 LYAY 201 (518)
T ss_pred cccc
Confidence 6654
No 255
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.56 E-value=1.6e+02 Score=31.64 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=50.6
Q ss_pred cChHHHHHHHHHHHhhcCc--EEEcCceEEEEEEEC-CeEEEEecCC----cEEEEEEEEeccCCCc
Q 014843 35 REPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDAMGNFS 94 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg--~i~~~t~v~~i~~~~-d~v~V~t~~g----~~~~ARlVIDA~G~~S 94 (417)
-++..++++|..=|..-+- .|..++++..++... +.|.|.+.++ .+.-.+.||-|.||..
T Consensus 87 p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 87 PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred CCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 6677999999999888665 799999999998888 5999987642 4788899999999995
No 256
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=31.36 E-value=70 Score=36.47 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=37.7
Q ss_pred HHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 45 KKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 45 ~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.+.+.+.|.+++.+++|+++..+.. .|.+.+|+++....||-|+|+.+
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 3445567899999999999987653 45566788899999999999874
No 257
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=30.04 E-value=2e+02 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEE---EEecCCcEEEEEEEEeccCCCch
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~---V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
..+-+.+.+...+.|.++..++++.+++...+... +.+.++..+++.++|-+.|+..+
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 56777888888889999999999999999887654 34556788999999999999973
No 258
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.66 E-value=1.7e+02 Score=30.66 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=33.4
Q ss_pred HHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC-CcEEEEEEEEeccCCCc
Q 014843 44 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS 94 (417)
Q Consensus 44 L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~-g~~~~ARlVIDA~G~~S 94 (417)
+.+.+.+.|.++..++. + .++++.+.|.+.+ +++++++.||-|+|..+
T Consensus 98 ~~~~~~~~gv~~~~g~~-~--~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 98 VEGLLKKNKVDIIRGEA-K--LVDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHHHhCCCEEEEEEE-E--EccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 44456668888887753 2 2455667776433 46899999999999874
No 259
>PLN02546 glutathione reductase
Probab=29.55 E-value=1.8e+02 Score=31.85 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCe-EEEEecCCcEEEEEEEEeccCCCchhh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~-v~V~t~~g~~~~ARlVIDA~G~~Spia 97 (417)
+...+.+++.+.|.+++.++++.++....++ +.|.+.++....+-.||-|.|..+...
T Consensus 295 ~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 295 VRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 3456667777899999999999999765444 556654443344678888999887653
No 260
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=29.15 E-value=1.7e+02 Score=30.53 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCch
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Sp 95 (417)
+.+.+.+.+.+.|.+++.++++++++. + .|.+.+|+++.+-.||-|.|..+.
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence 456677778889999999999999853 3 344456778999999999998754
No 261
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.91 E-value=2.3e+02 Score=30.03 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=45.8
Q ss_pred eeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecC--C--cEEEEEEEEeccCCCchhh
Q 014843 32 LEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 32 ~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~--g--~~~~ARlVIDA~G~~Spia 97 (417)
+..+|++ +.+.+.+.+.+. ..+..++.+++++..++++.|...+ + +++.+-.||-|.|..+...
T Consensus 210 l~~~d~~-~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 210 IPAADKD-IVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred CCcCCHH-HHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 3334543 345555566556 7899999999999888887776432 2 3699999999999987654
No 262
>PTZ00058 glutathione reductase; Provisional
Probab=28.87 E-value=2.3e+02 Score=31.23 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=46.4
Q ss_pred eeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECC-eEEEEecC-CcEEEEEEEEeccCCCch
Q 014843 31 ILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE-GKILSSHLIIDAMGNFSP 95 (417)
Q Consensus 31 ~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~v~V~t~~-g~~~~ARlVIDA~G~~Sp 95 (417)
++..+|++ +.+.+.+.+.+.|.+++.++.+.+++..++ ++.+...+ ++++.+-.||-|.|..+.
T Consensus 272 il~~~d~~-i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 272 LLRKFDET-IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 44456654 446677778888999999999999987654 45554333 457999999999997743
No 263
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=28.71 E-value=1.4e+02 Score=31.38 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=32.7
Q ss_pred HHHhhcCcEEEcCceEEEEEEE-----CCeEEEEecCC--cEEEEEEEEeccCCCc
Q 014843 46 KRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAMGNFS 94 (417)
Q Consensus 46 ~ka~~~Gg~i~~~t~v~~i~~~-----~d~v~V~t~~g--~~~~ARlVIDA~G~~S 94 (417)
+.+.+.|.++..++ ++.+..+ +..+.|.+.+| .+++++.||-|+|+.+
T Consensus 100 ~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 100 ALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 44556788888764 3333322 22677877666 4799999999999975
No 264
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=28.62 E-value=1.7e+02 Score=30.61 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
+.+.+.+++.+.|.++..+ ++..+ +++.+.|.+ +|++++++.||-|+|+..
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~~-~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLV--GPNTVEVLQ-DGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEec-CCeEEEcCEEEEecCCcC
Confidence 4455566677788888765 44443 344566643 567899999999999874
No 265
>PTZ00058 glutathione reductase; Provisional
Probab=28.26 E-value=1.1e+02 Score=33.63 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=33.1
Q ss_pred HHHHHHhhcCcEEEcCce-EEE---EE-------------EECCeEEEE------ecCCcEEEEEEEEeccCCCc
Q 014843 43 IVKKRFISLGGVIFEGYS-VSS---IC-------------TYENAAVLL------LAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 43 ~L~~ka~~~Gg~i~~~t~-v~~---i~-------------~~~d~v~V~------t~~g~~~~ARlVIDA~G~~S 94 (417)
.+.+.+.+.|.+++.++. |.+ +. .+++++.|. +.+|++++++.||-|+|+.+
T Consensus 140 ~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~lVIATGS~P 214 (561)
T PTZ00058 140 IYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKP 214 (561)
T ss_pred HHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEEEEecCCCC
Confidence 344455668888888764 333 11 123444452 33567899999999999875
No 266
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=26.36 E-value=1e+02 Score=35.71 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 46 KRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 46 ~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
+.+.+.|.+++.+++|+++..+. -+|.+.+|+++.+..||-|+|+.+
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence 34556789999999999887754 355666788899999999999874
No 267
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=26.18 E-value=1.8e+02 Score=32.40 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcCcEEEcCceEEEEEEE-CC--eEE--EEec-CCc-----EEEEEEEEeccCCC
Q 014843 38 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EGK-----ILSSHLIIDAMGNF 93 (417)
Q Consensus 38 ~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~-~d--~v~--V~t~-~g~-----~~~ARlVIDA~G~~ 93 (417)
+.|..-|.+.+++.|++++.+|+|+++..+ ++ +.+ |.+. +|+ .-.+++||-|.|..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 677788888999999999999999999986 22 222 2222 221 34778888887765
No 268
>PRK06116 glutathione reductase; Validated
Probab=26.05 E-value=1.8e+02 Score=30.33 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=30.4
Q ss_pred HHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 44 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 44 L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
..+.+.+.|.++..++ ++.+ ++..++ + +|++++++.||-|+|+.+
T Consensus 99 ~~~~l~~~gv~~~~g~-~~~v--~~~~v~--~-~g~~~~~d~lViATGs~p 143 (450)
T PRK06116 99 YRNGLENNGVDLIEGF-ARFV--DAHTVE--V-NGERYTADHILIATGGRP 143 (450)
T ss_pred HHHHHHhCCCEEEEEE-EEEc--cCCEEE--E-CCEEEEeCEEEEecCCCC
Confidence 3444566788888764 3333 334444 4 567899999999999874
No 269
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=25.82 E-value=1.6e+02 Score=30.04 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=43.4
Q ss_pred ccchhhhhcccccceeeccChHHHHHH---HHH-HHhh-cCcEEEcCceEEEEEEECC-eEEEEecC---C--cEEEEEE
Q 014843 17 DLRGRVKSGLKTFSILEFREPAKLIEI---VKK-RFIS-LGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHL 85 (417)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~Vdr~~L~~~---L~~-ka~~-~Gg~i~~~t~v~~i~~~~d-~v~V~t~~---g--~~~~ARl 85 (417)
+.|.++++..+. .-..-||++.+.+. +.+ ++.. .-..++.++++++++..++ ++.+++.+ + .++.+-.
T Consensus 254 ~~R~~~l~~~~~-~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~ 332 (341)
T PF13434_consen 254 EERRELLREQRH-TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDA 332 (341)
T ss_dssp HHHHHHHHHTGG-GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESE
T ss_pred HHHHHHHHHhHh-hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCE
Confidence 345555555442 12223666655333 222 2322 2358999999999999996 89988754 2 3789999
Q ss_pred EEeccCC
Q 014843 86 IIDAMGN 92 (417)
Q Consensus 86 VIDA~G~ 92 (417)
||-|+|.
T Consensus 333 VilATGy 339 (341)
T PF13434_consen 333 VILATGY 339 (341)
T ss_dssp EEE---E
T ss_pred EEEcCCc
Confidence 9999995
No 270
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=25.48 E-value=2.9e+02 Score=29.68 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=46.5
Q ss_pred ceeeccChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCc--EEEEEEEEeccCCC
Q 014843 30 SILEFREPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNF 93 (417)
Q Consensus 30 ~~~~~Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~--~~~ARlVIDA~G~~ 93 (417)
+|+.-.|++. -+.+.+...+.|.+++.+++++.++..++++.|...+|. ++++-.|+=|.|-.
T Consensus 207 ~iLp~~D~ei-~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 207 RILPGEDPEI-SKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred CCCCcCCHHH-HHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 3444455543 445556666677899999999999999888777776654 68888888898855
No 271
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=24.14 E-value=1.8e+02 Score=30.78 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHhhcCcEEEcCceEEEEEEECCeEEEEe--cCCcEEEEEEEEeccCCCc
Q 014843 47 RFISLGGVIFEGYSVSSICTYENAAVLLL--AEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 47 ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t--~~g~~~~ARlVIDA~G~~S 94 (417)
.+...|.++..++ +.-+..+++...|.+ .++++++++.||-|+|+..
T Consensus 109 ~~~~~~v~~~~g~-~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 109 LFKKNKITVLKGR-GSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred HHHhCCCEEEEEE-EEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 3444677777654 344443334444443 2356899999999999875
No 272
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.67 E-value=2.1e+02 Score=30.13 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCcEEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCc
Q 014843 41 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 94 (417)
Q Consensus 41 ~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~S 94 (417)
.+.+.+.+.+.|.++..++... ..++.++| ++++++++.||-|+|+.+
T Consensus 94 ~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v---~~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 94 NGIYQKNLEKNKVDVIFGHARF---TKDGTVEV---NGRDYTAPHILIATGGKP 141 (450)
T ss_pred HHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE---CCEEEEeCEEEEecCCCC
Confidence 3445566777889998887542 23333333 466799999999999875
No 273
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=23.67 E-value=4.3e+02 Score=28.19 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=48.3
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEECCe--------------------EEEEecC--CcEEEEEEEEeccCC
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--------------------AVLLLAE--GKILSSHLIIDAMGN 92 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d~--------------------v~V~t~~--g~~~~ARlVIDA~G~ 92 (417)
+|+=.|+.-+++|++..|+. +.+.+|++.+.+... ++|+..+ .+++++-++|.|-|+
T Consensus 240 fdpw~LLs~~rrk~~~lGv~-f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQ-FVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhhcce-EecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 78999999999999999654 557788888887432 3343322 247889999999998
Q ss_pred Cch-hhhhhhcC
Q 014843 93 FSP-VVKQIRSG 103 (417)
Q Consensus 93 ~Sp-iarql~~g 103 (417)
.|- |||-.+-|
T Consensus 319 ~s~QvArlAgIG 330 (509)
T KOG2853|consen 319 WSGQVARLAGIG 330 (509)
T ss_pred cHHHHHHHhccC
Confidence 765 44444444
No 274
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=22.99 E-value=63 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.428 Sum_probs=24.5
Q ss_pred cccccccCChhHHHHHHHHHHHhCCCChHHHHhhcCchhhhhhhHHHH
Q 014843 322 RPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 369 (417)
Q Consensus 322 ~~fl~d~~~~~~l~~~m~~~~~~~P~~v~~~~~~~g~~~~~~w~~~~~ 369 (417)
+.||++++. +.|.+-|..++...|. +=++|+.+|+
T Consensus 3 r~YL~~~v~-p~L~~gL~~l~~~rP~------------DPi~~La~~L 37 (42)
T PF05186_consen 3 RQYLKETVG-PVLTEGLAELAKERPE------------DPIEFLAEYL 37 (42)
T ss_dssp HHHHHHHTH-HHHHHHHHHHHHH--S------------SHHHHHHHHH
T ss_pred HHHHHHHhH-HHHHHHHHHHHHHCCC------------ChHHHHHHHH
Confidence 456777665 6788888888888887 5677888876
No 275
>PRK09897 hypothetical protein; Provisional
Probab=22.85 E-value=1.9e+02 Score=31.75 Aligned_cols=51 Identities=22% Similarity=0.113 Sum_probs=36.0
Q ss_pred HHhhcCc-EEEcCceEEEEEEECCeEEEEecCCcEEEEEEEEeccCCCchhhh
Q 014843 47 RFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 98 (417)
Q Consensus 47 ka~~~Gg-~i~~~t~v~~i~~~~d~v~V~t~~g~~~~ARlVIDA~G~~Spiar 98 (417)
++.++|. +|....+=..++.++++.++.+.+ +.+.-.+||||.|..+-=.+
T Consensus 400 ~l~~aG~L~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~a~G~~~~~~~ 451 (534)
T PRK09897 400 ALREAGIIHILALGEDYEMEINESRTVIKTED-NSYSFDVFIDARGQRPLKVK 451 (534)
T ss_pred HHHHcCCEEEEecCccceeEecCCeEEEEeCC-CceEeCEEEECCCCCCCccc
Confidence 3455665 555554434558888899998865 58889999999998854443
No 276
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.74 E-value=1.2e+02 Score=32.08 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=49.2
Q ss_pred cChHHHHHHHHHHHhhcCcEEEcCceEEEEEEE---CCeEEEEecCCcEEEEEEEEeccCCC
Q 014843 35 REPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF 93 (417)
Q Consensus 35 Vdr~~L~~~L~~ka~~~Gg~i~~~t~v~~i~~~---~d~v~V~t~~g~~~~ARlVIDA~G~~ 93 (417)
.+-.+|-.-|.+...+....+..-.++++++.- ++-.+|+..+|-.+++|-||-|.|+.
T Consensus 263 teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 263 TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 456788888888888888888888888887663 56788998889999999999999975
No 277
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=21.38 E-value=3.8e+02 Score=27.88 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCcEEEcCceEEEEEEECC-eEEEEecC--CcEEEEEEEEeccCCCchhh
Q 014843 40 LIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE--GKILSSHLIIDAMGNFSPVV 97 (417)
Q Consensus 40 L~~~L~~ka~~~Gg~i~~~t~v~~i~~~~d-~v~V~t~~--g~~~~ARlVIDA~G~~Spia 97 (417)
+...+.+++.+. .+++.++++++++..++ .++++..+ ++++.+-.||-|.|..+...
T Consensus 212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 212 VSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred HHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 455666666667 89999999999987654 45554323 34789999999999875543
No 278
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.35 E-value=3e+02 Score=29.00 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=29.0
Q ss_pred HhhcCcEEEcCceEEEEEEECCeEEEEecCCc--EEEEEEEEeccCCCc
Q 014843 48 FISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 94 (417)
Q Consensus 48 a~~~Gg~i~~~t~v~~i~~~~d~v~V~t~~g~--~~~ARlVIDA~G~~S 94 (417)
....|.+++.++. -...++.++|.+.+|+ +++++-||-|+|+.+
T Consensus 103 ~~~~~v~~~~g~a---~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 103 FRKNKVDWIKGWG---RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred HHhCCCEEEEEEE---EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence 3445677776641 1223456777765553 699999999999975
Done!