Query 014844
Match_columns 417
No_of_seqs 156 out of 330
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 09:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.6 1.2E-15 2.6E-20 113.6 2.0 38 380-417 1-38 (45)
2 KOG1601 GATA-4/5/6 transcripti 97.0 0.00028 6.1E-09 61.7 1.3 41 377-417 290-330 (340)
3 PF09425 CCT_2: Divergent CCT 94.2 0.028 6.1E-07 38.8 1.6 24 379-403 3-26 (27)
4 PF11302 DUF3104: Protein of u 17.3 65 0.0014 27.1 1.0 26 247-272 4-37 (75)
5 PF07597 DUF1560: Protein of u 13.6 73 0.0016 24.7 0.4 16 395-410 10-25 (49)
6 KOG2422 Uncharacterized conser 12.5 1E+02 0.0022 34.7 1.2 16 293-308 93-108 (665)
7 PF13653 GDPD_2: Glycerophosph 12.1 88 0.0019 22.0 0.4 14 194-207 14-27 (30)
8 PF03286 Pox_Ag35: Pox virus A 11.9 1.9E+02 0.0041 28.2 2.6 9 263-271 35-43 (200)
9 PF07797 DUF1639: Protein of u 11.1 1.3E+02 0.0028 23.8 1.0 12 51-62 16-27 (50)
10 KOG3536 Adaptor protein CED-6, 11.0 1.6E+02 0.0034 30.8 1.9 37 34-70 249-290 (321)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.55 E-value=1.2e-15 Score=113.64 Aligned_cols=38 Identities=58% Similarity=0.915 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhccCCCCcccccccccccccCCCCCC
Q 014844 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKV 417 (417)
Q Consensus 380 Rea~v~RYkEKRk~R~F~KkIRY~~RK~~Ad~RPRvKG 417 (417)
|+++|+||+|||++|+|+|+|||+|||.+||.||||||
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkG 38 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKG 38 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCC
Confidence 78999999999999999999999999999999999998
No 2
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=96.99 E-value=0.00028 Score=61.74 Aligned_cols=41 Identities=51% Similarity=0.741 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHhhccCCCCcccccccccccccCCCCCC
Q 014844 377 GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKV 417 (417)
Q Consensus 377 ~~~Rea~v~RYkEKRk~R~F~KkIRY~~RK~~Ad~RPRvKG 417 (417)
...|++.+.||+++++.|.|+++|+|..|+.+|+.|||++|
T Consensus 290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 46899999999999999999999999999999999999986
No 3
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=94.21 E-value=0.028 Score=38.77 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHhhccCCCCccccc
Q 014844 379 LREASVLRYKEKRRTRLFSKKIRYQ 403 (417)
Q Consensus 379 ~Rea~v~RYkEKRk~R~F~KkIRY~ 403 (417)
.|.++|+||.||||.|++. +.-|.
T Consensus 3 aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 3 ARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ---HHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 5999999999999999998 66664
No 4
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=17.28 E-value=65 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.516 Sum_probs=15.6
Q ss_pred ccccccc-------ccccccCCCCcccccc-ccc
Q 014844 247 FGMRSGM-------KALRQVDEGNWWNFPI-DVL 272 (417)
Q Consensus 247 lG~r~~~-------~ALR~~dd~~wW~~p~-dv~ 272 (417)
|+++.|+ +..-+..+.+|||-=+ .+.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ 37 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCE 37 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEEEEEe
Confidence 4556663 2333455789999766 443
No 5
>PF07597 DUF1560: Protein of unknown function (DUF1560); InterPro: IPR011454 This is a small family of short hypothetical proteins in Rhodopirellula baltica.
Probab=13.63 E-value=73 Score=24.67 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.4
Q ss_pred CCCCcccccccccccc
Q 014844 395 LFSKKIRYQVRKVNAD 410 (417)
Q Consensus 395 ~F~KkIRY~~RK~~Ad 410 (417)
.|.|++|++||+..|.
T Consensus 10 ~~~~~~rwecrrfeak 25 (49)
T PF07597_consen 10 SFAKRSRWECRRFEAK 25 (49)
T ss_pred ccCCcchhhhhhhhhc
Confidence 5889999999987663
No 6
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=12.55 E-value=1e+02 Score=34.68 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=6.9
Q ss_pred hhhhhhcccCCccccc
Q 014844 293 SEKRKKKVGKEKPVAE 308 (417)
Q Consensus 293 ~kKKkkKkk~~~~~~e 308 (417)
+||||||||+.+.+++
T Consensus 93 KKK~krkkKk~~~~~d 108 (665)
T KOG2422|consen 93 KKKKKRKKKKSTAEVD 108 (665)
T ss_pred chhhhhccccccCccc
Confidence 3444444444444444
No 7
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=12.08 E-value=88 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=9.8
Q ss_pred chHHHhhhhhhccc
Q 014844 194 DEEFEEGIDSIMGN 207 (417)
Q Consensus 194 dEe~eeGIDsIMG~ 207 (417)
-+.++.|+|+||=.
T Consensus 14 ~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 14 RELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHT-SEEEES
T ss_pred HHHHHcCCCEeeCC
Confidence 46678899999843
No 8
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=11.86 E-value=1.9e+02 Score=28.20 Aligned_cols=9 Identities=44% Similarity=0.383 Sum_probs=6.1
Q ss_pred Ccccccccc
Q 014844 263 NWWNFPIDV 271 (417)
Q Consensus 263 ~wW~~p~dv 271 (417)
+==-||.|+
T Consensus 35 ~DdiFP~DI 43 (200)
T PF03286_consen 35 NDDIFPEDI 43 (200)
T ss_pred ccccCcccc
Confidence 444688877
No 9
>PF07797 DUF1639: Protein of unknown function (DUF1639); InterPro: IPR012438 This approximately 50-residue region is found in a number of sequences derived from hypothetical plant proteins. This region features a highly basic 5 amino-acid stretch towards its centre.
Probab=11.13 E-value=1.3e+02 Score=23.81 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=10.6
Q ss_pred ecCCCCCCCCCC
Q 014844 51 TRKARTPRKRPN 62 (417)
Q Consensus 51 tkrpRTpRKRPN 62 (417)
+|-||.|+|||-
T Consensus 16 ~kpprRPkKRpk 27 (50)
T PF07797_consen 16 SKPPRRPKKRPK 27 (50)
T ss_pred CCCCCCCCcccH
Confidence 678999999997
No 10
>KOG3536 consensus Adaptor protein CED-6, contains PTB domain [General function prediction only]
Probab=10.98 E-value=1.6e+02 Score=30.75 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=24.9
Q ss_pred CCCCcccccCCCC-----cceeecCCCCCCCCCChhHHHHHH
Q 014844 34 SPLSTLSEASNSP-----LAISTRKARTPRKRPNQTYNEAAA 70 (417)
Q Consensus 34 SpSSTlSEaSNsp-----~sistkrpRTpRKRPNQTYNEAAa 70 (417)
+-||+-.+-+++| .++-..|.-.-|++|||..||-.+
T Consensus 249 ~~ss~~~~~~~~pp~vp~~~e~~srl~~~~~~P~q~~~~g~~ 290 (321)
T KOG3536|consen 249 SVSSVVWELSDSPPSVPKDSEAFSRLAASRTNPPQALDEGLT 290 (321)
T ss_pred hcccccccccCCCCCCCCCcchhhhhhccCCCCCcccccccc
Confidence 4566677777775 333355666778889998888543
Done!