Query 014844
Match_columns 417
No_of_seqs 156 out of 330
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 90.8 0.13 4.4E-06 32.9 2.1 18 378-395 4-21 (21)
2 3ogk_Q JAZ1 incomplete degron 90.3 0.095 3.3E-06 33.8 1.2 19 380-398 1-19 (22)
3 2dhy_A CUE domain-containing p 50.9 9.9 0.00034 29.7 2.8 26 54-79 7-32 (67)
4 4g9j_C Synthetic peptide, seri 35.4 15 0.00053 24.2 1.4 22 52-73 3-24 (26)
5 3ukw_C Bimax1 peptide; arm rep 34.5 12 0.00041 25.0 0.8 10 53-62 3-12 (28)
6 2i0n_A Class VII unconventiona 26.3 52 0.0018 24.7 3.3 41 239-279 19-71 (80)
7 3ioz_B T-cell surface glycopro 19.4 30 0.001 25.7 0.6 8 60-67 19-26 (45)
8 3kdf_A Replication protein A 1 17.8 52 0.0018 27.8 1.8 22 63-85 97-118 (121)
9 3v2c_Y Ribosome-associated inh 11.0 95 0.0033 25.9 1.6 24 381-404 82-105 (119)
10 2pi2_E Replication protein A 1 10.5 1E+02 0.0035 26.9 1.6 20 63-83 118-137 (142)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=90.79 E-value=0.13 Score=32.92 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHhhccC.....
Q 014844 378 GLREASVLRYKEKRRTRL..... 395 (417)
Q Consensus 378 ~~Rea~v~RYkEKRk~R~..... 395 (417)
..|.++|+||-||||.|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 469999999999999874
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=90.35 E-value=0.095 Score=33.82 Aligned_cols=19 Identities=53% Similarity=0.723 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 014844 380 REASVLRYKEKRRTRLFSK 398 (417)
Q Consensus 380 Rea~v~RYkEKRk~R~F~K 398 (417)
|.++|+||-||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999997654
No 3
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.92 E-value=9.9 Score=29.70 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCCCCCCChhHHHHHHHHHhhCCCc
Q 014844 54 ARTPRKRPNQTYNEAAALLSTACPNI 79 (417)
Q Consensus 54 pRTpRKRPNQTYNEAAaLLstayPni 79 (417)
.|+.|+.+-+.++++..-|..|+|+|
T Consensus 7 ~~~~~~~~~~~~~~~v~~L~~MFP~l 32 (67)
T 2dhy_A 7 GRPARQVRRLEFNQAMDDFKTMFPNM 32 (67)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHCSSS
T ss_pred CCcchhccCCCHHHHHHHHHHHCCCC
Confidence 37889999999999999999999987
No 4
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=35.37 E-value=15 Score=24.16 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=14.2
Q ss_pred cCCCCCCCCCChhHHHHHHHHH
Q 014844 52 RKARTPRKRPNQTYNEAAALLS 73 (417)
Q Consensus 52 krpRTpRKRPNQTYNEAAaLLs 73 (417)
|||...||----||-|||.++.
T Consensus 3 krpkrkrknarvtfaeaaeii~ 24 (26)
T 4g9j_C 3 KRPKRKRKNARVTFAEAAEIIX 24 (26)
T ss_pred cccccccccceeeHHHhhhHhh
Confidence 4444444444469999999864
No 5
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=34.48 E-value=12 Score=25.03 Aligned_cols=10 Identities=60% Similarity=1.046 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q 014844 53 KARTPRKRPN 62 (417)
Q Consensus 53 rpRTpRKRPN 62 (417)
|.|.|||||-
T Consensus 3 rrrrprkrpl 12 (28)
T 3ukw_C 3 RRRRPRKRPL 12 (28)
T ss_dssp ----CCCCCC
T ss_pred cccccccCCc
Confidence 5678889884
No 6
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=26.33 E-value=52 Score=24.71 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCCceeeccccccc--cccccccCCCCccc---------ccc-cccccCcCCC
Q 014844 239 FGGKLELGFGMRSG--MKALRQVDEGNWWN---------FPI-DVLQISPKFN 279 (417)
Q Consensus 239 f~gk~~lGlG~r~~--~~ALR~~dd~~wW~---------~p~-dv~~Isp~~~ 279 (417)
|.+.-.=-|.|+.| +.-|..+|++.||. ||. -|..|.+..+
T Consensus 19 y~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~ 71 (80)
T 2i0n_A 19 YNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVP 71 (80)
T ss_dssp BCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSCCC
T ss_pred CCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCCC
Confidence 44433333666666 34455555555995 688 5666655443
No 7
>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membran myristate, viral immunoevasion, virulence; 3.70A {Homo sapiens}
Probab=19.38 E-value=30 Score=25.69 Aligned_cols=8 Identities=63% Similarity=0.800 Sum_probs=6.5
Q ss_pred CCChhHHH
Q 014844 60 RPNQTYNE 67 (417)
Q Consensus 60 RPNQTYNE 67 (417)
=+||+|||
T Consensus 19 ~~n~~Yne 26 (45)
T 3ioz_B 19 GQNQLYNE 26 (45)
T ss_pred ccchHHHH
Confidence 36899998
No 8
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=17.82 E-value=52 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhhCCCccccCCc
Q 014844 63 QTYNEAAALLSTACPNIFSTKHL 85 (417)
Q Consensus 63 QTYNEAAaLLstayPniFs~k~~ 85 (417)
..|||+..|... ||.+|+....
T Consensus 97 ~~yn~lv~l~~~-~~~lf~~~~~ 118 (121)
T 3kdf_A 97 GLYNEAVKIIHD-FPQFYPLGIV 118 (121)
T ss_dssp HHHHHHHHHHHH-CGGGSCCC--
T ss_pred HHHHHHHHHHhc-CCcccccccc
Confidence 799999999988 9999987543
No 9
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=11.04 E-value=95 Score=25.85 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhccCCCCcccccc
Q 014844 381 EASVLRYKEKRRTRLFSKKIRYQV 404 (417)
Q Consensus 381 ea~v~RYkEKRk~R~F~KkIRY~~ 404 (417)
+..|.||++|.+.+.=...+++++
T Consensus 82 erQLrK~K~K~~~~~~~~~~~~~~ 105 (119)
T 3v2c_Y 82 ERQLNKLQHKGEARRAATSVKDAN 105 (119)
T ss_dssp HHHHHHHHHSTTCCC---------
T ss_pred HHHHHHHHHHHHhhcCCcccchHH
Confidence 446899999999887766776654
No 10
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=10.45 E-value=1e+02 Score=26.85 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhhCCCccccC
Q 014844 63 QTYNEAAALLSTACPNIFSTK 83 (417)
Q Consensus 63 QTYNEAAaLLstayPniFs~k 83 (417)
.+||++..|.. .+|.+|+-.
T Consensus 118 ~~yn~lv~l~~-~f~~lF~~~ 137 (142)
T 2pi2_E 118 GLYNEAVKIIH-DFPQFYPLG 137 (142)
T ss_dssp HHHHHHHHHHH-HCGGGSCSS
T ss_pred HHHHHHHHHHH-hCccceEec
Confidence 68999999988 999999754
Done!