BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014845
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2
SV=1
Length = 436
Score = 566 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)
Query: 29 MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 88
M T C +++ + SFKK+ QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 46 MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 105
Query: 89 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 148
A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC VHVA
Sbjct: 106 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 165
Query: 149 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 208
+ GH+I++C G T ++RR HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 166 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 225
Query: 209 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 266
A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P S SS L++LDT
Sbjct: 226 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 285
Query: 267 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 326
G R PPP+ D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 286 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 345
Query: 327 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 386
KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL L+R+YGKAPA+VE+C
Sbjct: 346 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 405
Query: 387 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
M +GA+VP++YK MRLDIIVP+S+E D+VA
Sbjct: 406 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436
>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2
SV=1
Length = 440
Score = 342 bits (876), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/408 (42%), Positives = 260/408 (63%), Gaps = 10/408 (2%)
Query: 12 FLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPY 71
F F + ++ + ++SR L RR L + PQN DLP +++KKP+
Sbjct: 39 FGFSPSLQGSSIEFSLQLNSRVVLSKERR---SLPLVVRNDRPQNEDLPKQYTRREKKPF 95
Query: 72 PIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLL 131
P+PI +R+ A++ + + ++PL PPKNG++V L+ +AY+V +A LI L +L+
Sbjct: 96 PVPIVDLRRAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLM 155
Query: 132 HVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDP 191
V+ V C C+E+HV GH ++C+G ++R+ H W I D+++P+E+YHL+D
Sbjct: 156 KVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDR 215
Query: 192 FGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGK-KVIDRGGFVEEP 250
G+RI+H+ RF R+PAVVELCIQ GV+IPE+P++RR KPI +GK + +D +E
Sbjct: 216 LGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVD----ADET 271
Query: 251 RPWRSRGSSALSDLDTDGACGRLPPPSLAD-VPRIAQETMDAYEVVRSGVTKLMRKYSVK 309
L T+ + PPS + +A+ET+ A+E +R+G KLMR Y V+
Sbjct: 272 ELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVR 331
Query: 310 ACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLR 369
CGYCPEVH+GP GH + CGAFKHQ R+G+HGWQ AV+D++ PP YVWHV D GPP++
Sbjct: 332 VCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQ 391
Query: 370 SALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPES-EEVDLV 416
L+ +YG+APAVVE+C QAGA VPE Y+ TMRL++ +P S +E ++V
Sbjct: 392 RELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMV 439
>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2
SV=1
Length = 402
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 240/369 (65%), Gaps = 12/369 (3%)
Query: 54 PQNVDLPTLPPKKK--KKPYPIPIEKIRQVAKKDKRLAEMGIEKPLE-PPKNGILVPDLI 110
P D+P PPK K +KPYP P++++ + AK++K+L ++ + LE PP NG+LVP+L+
Sbjct: 41 PLYADVPK-PPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELV 99
Query: 111 HVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHS 170
VA+ V +L+ GL++++H +PV+ C C+EVH+ GH I+ C G + R + H
Sbjct: 100 DVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHV 159
Query: 171 WVRGSINDILLPVESYHLYDPFGR-RIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRR 229
W RG ++D++L + +HLYD + R+ H+ RF +I AV+ELCIQAGVD+ ++PS+RR
Sbjct: 160 WKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRR 219
Query: 230 TKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETM 289
+KP+ ++ +++D + ++ L + D C + ++ ETM
Sbjct: 220 SKPVYSIEGRIVDFEDVNDGNSELAVTSTTTL--IQEDDRCKE----EKKSLKELSFETM 273
Query: 290 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVD 349
+++ + GV KLM +Y V CGYCPE+ +GP GH V++C A KHQ RDG H WQ+A +D
Sbjct: 274 ESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATID 333
Query: 350 EVFPPNYVWHVQDPK-GPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVP 408
+V P YVWHV+DP G L ++LKR+YGKAPAV+E+C+Q GA VP+QY MRLD++ P
Sbjct: 334 DVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393
Query: 409 ESEEVDLVA 417
+ +EVDLVA
Sbjct: 394 QRDEVDLVA 402
>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2
SV=2
Length = 337
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 168/336 (50%), Gaps = 31/336 (9%)
Query: 67 KKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKG 126
++ Y + ++ D R I K +E V +++ VA E++ A K LI
Sbjct: 16 QRASYSTTSSRNNKLKLDDLRKLRPMILKRIENRAKDYPVKEIVPVAEEILIARKNLISN 75
Query: 127 LAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESY 186
+A LL V PV C CSEV V GH I+ C+ H WV GSINDIL+PVESY
Sbjct: 76 IAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESY 135
Query: 187 HLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGF 246
HL++ I+H+ RFDYDR+PA++ELC QAG PE +++
Sbjct: 136 HLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE---------------EILQYSEI 180
Query: 247 VEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKY 306
+ P+ +S+ D LP D+ + + A+E VR+GV KL+ Y
Sbjct: 181 HDNPQ---------ISEEDIRS----LPA---GDLKYVGANALMAWEKVRAGVKKLLLVY 224
Query: 307 SVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGP 366
K C C EVH+GP GH +LCG FK++ G H W+ A V+++ P VWH +
Sbjct: 225 PSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRPQDPV 284
Query: 367 PLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMR 402
L + YYG APA+V +C GA VP +Y M+
Sbjct: 285 VLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 329 CGAFKHQWRDGKHGWQDAVVDEVFPP------NYVWHVQDPKGPPLRSALK 373
CG HQ +D K+G Q + + +PP NYV P PP+ A+K
Sbjct: 420 CGQEGHQMKDCKNGRQANFLGKYWPPGGTRPGNYVQKQVSPSAPPMEEAVK 470
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL
PE=2 SV=1
Length = 348
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 321 PWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGK 378
P ++++ G + +GK GW D + +++PP+ V + PK PP YGK
Sbjct: 120 PGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANEEYGK 177
>sp|Q86VH2|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1
Length = 1401
Score = 32.3 bits (72), Expect = 7.4, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 34/169 (20%)
Query: 22 HLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQV 81
HL+N + SS+ S + L+ +Q+ +NV L T ++K K I + +V
Sbjct: 968 HLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTK-----ISEQVEV 1022
Query: 82 AKKDKRLAEMGIEKPLEPPKNG-ILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCS 140
+K+K + E KNG +L P+ HV ++ L +G+ L
Sbjct: 1023 LQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQ-------LEEGIEAL---------- 1065
Query: 141 ECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDI-----LLPVE 184
E + + IQN Q + R SFH+ RG N + L PVE
Sbjct: 1066 ---EAAIEYRNESIQNRQKSL---RASFHNLSRGEANVLEKLACLSPVE 1108
>sp|Q7YR43|DDR1_PANTR Epithelial discoidin domain-containing receptor 1 OS=Pan
troglodytes GN=DDR1 PE=3 SV=1
Length = 909
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 337 RDGKH--GWQDAVVDEVFPPNYVWHVQDPKG-------PPLRSALKRYYGKAPAVVEVCM 387
RDG+ GW+D EV N +DP+G PP+ + L R+Y +A V+ VC+
Sbjct: 120 RDGRRWMGWKDRWGQEVISGN-----EDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCL 174
Query: 388 Q 388
+
Sbjct: 175 R 175
>sp|Q08345|DDR1_HUMAN Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens
GN=DDR1 PE=1 SV=1
Length = 913
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 337 RDGKH--GWQDAVVDEVFPPNYVWHVQDPKG-------PPLRSALKRYYGKAPAVVEVCM 387
RDG+ GW+D EV N +DP+G PP+ + L R+Y +A V+ VC+
Sbjct: 124 RDGRRWMGWKDRWGQEVISGN-----EDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCL 178
Query: 388 Q 388
+
Sbjct: 179 R 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,091,170
Number of Sequences: 539616
Number of extensions: 7748313
Number of successful extensions: 16602
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 16540
Number of HSP's gapped (non-prelim): 58
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)