Query 014845
Match_columns 417
No_of_seqs 104 out of 117
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00111 accumulation of photo 100.0 6E-155 1E-159 1152.7 30.0 397 18-417 2-399 (399)
2 PF05634 APO_RNA-bind: APO RNA 100.0 1.2E-87 2.5E-92 624.6 18.3 195 48-242 10-204 (204)
3 PF05634 APO_RNA-bind: APO RNA 100.0 6.8E-67 1.5E-71 485.8 8.1 175 218-407 18-196 (204)
4 PLN00111 accumulation of photo 100.0 1.7E-58 3.7E-63 461.3 10.3 165 218-396 40-208 (399)
5 PRK11582 flagella biosynthesis 31.2 21 0.00046 33.9 0.8 41 101-149 39-82 (169)
6 TIGR03823 FliZ flagellar regul 29.9 23 0.0005 33.6 0.8 24 118-149 59-82 (168)
7 PRK11582 flagella biosynthesis 27.2 30 0.00064 32.9 1.0 25 290-322 59-83 (169)
8 TIGR03823 FliZ flagellar regul 25.8 33 0.00071 32.6 1.0 25 290-322 59-83 (168)
9 PF13696 zf-CCHC_2: Zinc knuck 22.3 34 0.00074 24.5 0.3 19 136-159 8-26 (32)
10 PF13887 MRF_C1: Myelin gene r 19.5 34 0.00073 25.2 -0.2 23 368-390 2-24 (36)
No 1
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=5.6e-155 Score=1152.67 Aligned_cols=397 Identities=55% Similarity=0.994 Sum_probs=377.4
Q ss_pred echhhhhcccccccceeeeecCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q 014845 18 FRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPL 97 (417)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlP~~~~k~~rKP~~~p~k~lir~ar~e~~~~~~~p~~~l 97 (417)
+...+....+..++.++.|.+........+..++++|||+|+|++++|++||||+|||++++|+||+++++++++|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~~~l 81 (399)
T PLN00111 2 LPSSIPSLRKLKLSLSFRCSSQLHRRKLSSVIRSEYPQNADLPRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERPL 81 (399)
T ss_pred ccccccccccceeeeeeeecccccccccceeecccCCcccccCCCCCchhcCCCCccHHHHHHHHHHHhhhhhcCCCccC
Confidence 34556667778889999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccC
Q 014845 98 EPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSIN 177 (417)
Q Consensus 98 epP~NgLLv~~LipvA~evl~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~ir~C~g~k~~~R~g~H~W~~a~v~ 177 (417)
+||+|||||++|++||++||+||++|++||+|||++|||++|+||+|||||++||+||||+|++|++|||+|+|++|+||
T Consensus 82 ~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~ 161 (399)
T PLN00111 82 DPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVE 161 (399)
T ss_pred CCCccCccccccHHHHHHHHHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCeeeeeeCCCCCcccccccccCCCcchhhhhHhhcCCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCC-
Q 014845 178 DILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSR- 256 (417)
Q Consensus 178 Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~riPAVVELCiQAGvdiPe~p~krr~kP~~~i~k~i~~~~~~~~~~~~~~~~- 256 (417)
|||+|+|+|||+|++|++|.||+||+|||||||||||||||||+|+||++||++|+++++++++|+++++++++++++.
T Consensus 162 Dvl~P~e~~Hl~D~~g~~i~h~~Rf~y~riPAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T PLN00111 162 DVLVPVESYHLYDRFGKRIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGP 241 (399)
T ss_pred ceeccceeeEeccCCCcccccccccccCcccHHHHHHHHcCCCCCccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCccCccCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccc
Q 014845 257 GSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQW 336 (417)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~pp~~~el~~vA~e~l~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~ 336 (417)
...++.+.+.... ..+.+.+||++||+|||+||+.|++||++||++|+|++|||||||||||+||++|+|+|||||+
T Consensus 242 ~~~~~~e~~~~~~---~~~~~~~~l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~C~~~k~q~ 318 (399)
T PLN00111 242 SSPLLTELDDSEI---EAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQ 318 (399)
T ss_pred ccccccccccccc---cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeeecCCchhcc
Confidence 3344444443322 3333678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCccCCCCeeeeccCCCCCccccchhhhcCCCchhhhhHHHcCCCCCCCCcccccccccCCCCcccccc
Q 014845 337 RDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLV 416 (417)
Q Consensus 337 R~g~H~W~~a~vdDvlpP~~vwHl~d~~g~~l~~e~R~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~p~~~e~~~v 416 (417)
|||+|+||+|+|||||||+||||++|++|++|.||+||||||||||||||+||||+||++|+||||+|++||++||++||
T Consensus 319 r~g~H~Wq~a~vdDlvpP~~vwH~~d~~~~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRldv~~P~~~E~~lv 398 (399)
T PLN00111 319 RDGQHGWQEATVDDLVPPNYVWHVRDQDGPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLV 398 (399)
T ss_pred cCCcccccccccccccCCceeEecCCCCCCcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhccccCCCcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 014845 417 A 417 (417)
Q Consensus 417 ~ 417 (417)
|
T Consensus 399 a 399 (399)
T PLN00111 399 A 399 (399)
T ss_pred C
Confidence 7
No 2
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=1.2e-87 Score=624.61 Aligned_cols=195 Identities=50% Similarity=0.960 Sum_probs=191.9
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 014845 48 KKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGL 127 (417)
Q Consensus 48 ~~~~~~~~~~DlP~~~~k~~rKP~~~p~k~lir~ar~e~~~~~~~p~~~lepP~NgLLv~~LipvA~evl~A~~~L~~Gv 127 (417)
...+++|||+|||+.++|+||||||+|||+|+++||+|+++++++|+++|+||+|||||++|++||++||+||++|++||
T Consensus 10 ~~~~~~~~~~d~P~~~~k~ekKp~p~p~k~l~~~are~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv 89 (204)
T PF05634_consen 10 VIRNESPQNADLPRPLPKSEKKPYPTPIKELIRRAREERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWETLISGV 89 (204)
T ss_pred hhcccCCccccCCCcCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccCccccCCeeeeeeCCCCCcccccccccCCCc
Q 014845 128 AQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRI 207 (417)
Q Consensus 128 ~kLm~v~pV~~C~~C~EVHVG~~GH~ir~C~g~k~~~R~g~H~W~~a~v~Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~ri 207 (417)
+|||++|||++||||||||||++||+||||+|++|++|||+|+|++|+|||||+|+|+|||+|++|++|.||+|||||||
T Consensus 90 ~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R~~y~ri 169 (204)
T PF05634_consen 90 KKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEERFYYGRI 169 (204)
T ss_pred HHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHhhcCCCCCCCCCCCCCCCeeeccceeee
Q 014845 208 PAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVID 242 (417)
Q Consensus 208 PAVVELCiQAGvdiPe~p~krr~kP~~~i~k~i~~ 242 (417)
||||||||||||++|+||++||+||+++|+|+++|
T Consensus 170 PAVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd 204 (204)
T PF05634_consen 170 PAVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD 204 (204)
T ss_pred chHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence 99999999999999999999999999999999885
No 3
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=6.8e-67 Score=485.85 Aligned_cols=175 Identities=45% Similarity=0.831 Sum_probs=165.1
Q ss_pred CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 014845 218 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE 293 (417)
Q Consensus 218 GvdiPe~p~krr~kP~~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~ 293 (417)
-+|+|...+|+++||+++|+++|+.++++ .+++.+.+.++.+.||+ +++|++||++||+||+
T Consensus 18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are--------------~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~ 83 (204)
T PF05634_consen 18 NADLPRPLPKSEKKPYPTPIKELIRRARE--------------ERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWE 83 (204)
T ss_pred cccCCCcCCccccCCCCccHHHHHHHHHH--------------HHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999976664 34577788888898988 8999999999999999
Q ss_pred HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 014845 294 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK 373 (417)
Q Consensus 294 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDvlpP~~vwHl~d~~g~~l~~e~R 373 (417)
.|++||+|||++|||++|||||||||||+||++|||+|||||+|||+|+||+|+|||||||+|||||+|++|++|.||+|
T Consensus 84 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R 163 (204)
T PF05634_consen 84 TLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEER 163 (204)
T ss_pred HHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhhhhHHHcCCCCCCCCcccccccccC
Q 014845 374 RYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIV 407 (417)
Q Consensus 374 ~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~ 407 (417)
|||||||||||||+||||++|+ |.+|||..-++
T Consensus 164 ~~y~riPAVVELCiQAGa~vPe-ypt~rR~kPv~ 196 (204)
T PF05634_consen 164 FYYGRIPAVVELCIQAGADVPE-YPTKRRTKPVY 196 (204)
T ss_pred cccCccchHHHHHHhhCCcCCc-ccccccccceE
Confidence 9999999999999999999995 99999876554
No 4
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=1.7e-58 Score=461.32 Aligned_cols=165 Identities=30% Similarity=0.514 Sum_probs=157.4
Q ss_pred CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 014845 218 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE 293 (417)
Q Consensus 218 GvdiPe~p~krr~kP~~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~ 293 (417)
-+|+|.+.+|+.+|||++|++.++..+++ .+.+.++++++.++||+ +++|++||++||+||+
T Consensus 40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~--------------~~~~~~~~~~~~l~pP~NGllV~~LvpvA~ev~~A~~ 105 (399)
T PLN00111 40 NADLPRPYSKREKKPYPRPMKLLRREARE--------------KKKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKARK 105 (399)
T ss_pred ccccCCCCCchhcCCCCccHHHHHHHHHH--------------HhhhhhcCCCccCCCCccCccccccHHHHHHHHHHHH
Confidence 58999999999999999999999966664 33467778889998888 8999999999999999
Q ss_pred HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 014845 294 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK 373 (417)
Q Consensus 294 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDvlpP~~vwHl~d~~g~~l~~e~R 373 (417)
.|++||+|||++|||++|+|||||||||+||+||||+|+|||+|||+|+|++|+|||||+|+|+|||+|++|++|.|++|
T Consensus 106 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~i~h~~R 185 (399)
T PLN00111 106 LLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRIKHDER 185 (399)
T ss_pred HHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhhhhHHHcCCCCCCC
Q 014845 374 RYYGKAPAVVEVCMQAGAQVPEQ 396 (417)
Q Consensus 374 ~~ygr~PAVVELCiQAGa~vP~~ 396 (417)
|||||||||||||+||||++|+.
T Consensus 186 f~y~riPAVvELCiQAGa~vPey 208 (399)
T PLN00111 186 FDVPRIPAIVELCIQAGVDIPEY 208 (399)
T ss_pred cccCcccHHHHHHHHcCCCCCcc
Confidence 99999999999999999999997
No 5
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=31.16 E-value=21 Score=33.89 Aligned_cols=41 Identities=24% Similarity=0.481 Sum_probs=26.4
Q ss_pred CCCCcch-hhHHHHHHHH--HHHHHHHHHHHhhcceEeeeccCCCCCceecC
Q 014845 101 KNGILVP-DLIHVAYEVI--DAWKLLIKGLAQLLHVIPVYGCSECSEVHVAH 149 (417)
Q Consensus 101 ~NgLLv~-~LipvA~evl--~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~ 149 (417)
-||-++. +-|.--.+.+ ++|..|-.++..| |+||+|+|--.
T Consensus 39 ~~gqiinK~~Ia~md~liDd~~W~~lQ~~l~aL--------CRFCs~i~c~~ 82 (169)
T PRK11582 39 FRGQIINKIAISRMDTLIDDNGWQKLQQEWVAL--------CRFCSDLHCNT 82 (169)
T ss_pred ecceeecHHHHHHHhhhccHHHHHHHHHHHHHH--------HHHhhhhhcCC
Confidence 3554543 3333333333 4699999988876 99999998543
No 6
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=29.85 E-value=23 Score=33.62 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhcceEeeeccCCCCCceecC
Q 014845 118 DAWKLLIKGLAQLLHVIPVYGCSECSEVHVAH 149 (417)
Q Consensus 118 ~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~ 149 (417)
++|..|-.++..| |+||+|+|--.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~ 82 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCNT 82 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCC
Confidence 3599999988876 99999998544
No 7
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=27.19 E-value=30 Score=32.93 Aligned_cols=25 Identities=16% Similarity=0.603 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhceeeecccCCCCCeeecCC
Q 014845 290 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPW 322 (417)
Q Consensus 290 ~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~ 322 (417)
.+|..+..++..| |.||||+|--+.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~ 83 (169)
T PRK11582 59 NGWQKLQQEWVAL--------CRFCSDLHCNTQ 83 (169)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCC
Confidence 4799999988776 999999986554
No 8
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=25.75 E-value=33 Score=32.61 Aligned_cols=25 Identities=20% Similarity=0.627 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhceeeecccCCCCCeeecCC
Q 014845 290 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPW 322 (417)
Q Consensus 290 ~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~ 322 (417)
.+|..+..++..| |.||+|+|--+.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~ 83 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCNTT 83 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCC
Confidence 4799999988776 999999986544
No 9
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=22.28 E-value=34 Score=24.48 Aligned_cols=19 Identities=42% Similarity=1.001 Sum_probs=14.8
Q ss_pred eeccCCCCCceecCCCCccccccC
Q 014845 136 VYGCSECSEVHVAHSGHHIQNCQG 159 (417)
Q Consensus 136 V~~C~~C~EVHVG~~GH~ir~C~g 159 (417)
-+.|..| +..||.|++|--
T Consensus 8 ~Y~C~~C-----~~~GH~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRC-----GQKGHWIQDCPT 26 (32)
T ss_pred CCEeecC-----CCCCccHhHCCC
Confidence 4677777 468999999964
No 10
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=19.46 E-value=34 Score=25.22 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.4
Q ss_pred cccchhhhcCCCchhhhhHHHcC
Q 014845 368 LRSALKRYYGKAPAVVEVCMQAG 390 (417)
Q Consensus 368 l~~e~R~~ygr~PAVVELCiQAG 390 (417)
+.++.|-||.-+-||-|||...|
T Consensus 2 ~Vdk~rifmEnV~AvqeLck~t~ 24 (36)
T PF13887_consen 2 TVDKERIFMENVGAVQELCKLTD 24 (36)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999998876
Done!