Query 014845
Match_columns 417
No_of_seqs 104 out of 117
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc8_A Nucleocapsid protein; H 28.8 26 0.0009 22.6 1.7 19 138-161 8-26 (29)
2 1yuz_A Nigerythrin; rubrythrin 27.4 1.1E+02 0.0037 27.8 6.1 32 132-163 167-198 (202)
3 1dsq_A Nucleic acid binding pr 22.0 31 0.0011 21.8 1.0 20 138-162 4-23 (26)
4 1lko_A Rubrerythrin all-iron(I 21.1 2.1E+02 0.007 25.5 6.6 30 134-163 153-183 (191)
5 1a6b_B Momulv, zinc finger pro 19.6 60 0.002 22.9 2.2 25 137-166 11-35 (40)
6 1una_A GA unassembled coat pro 15.8 30 0.001 29.7 -0.1 31 379-410 63-94 (129)
7 1u6p_A GAG polyprotein; MLV, A 15.7 77 0.0026 23.8 2.1 23 309-336 24-46 (56)
8 2ysa_A Retinoblastoma-binding 14.9 51 0.0017 24.7 0.9 17 137-158 8-24 (55)
9 1msc_A Bacteriophage MS2 coat 12.6 42 0.0014 28.9 -0.2 24 387-410 71-95 (129)
10 1yuz_A Nigerythrin; rubrythrin 12.5 98 0.0034 28.1 2.3 31 304-334 167-197 (202)
No 1
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=28.76 E-value=26 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.847 Sum_probs=14.8
Q ss_pred ccCCCCCceecCCCCccccccCCc
Q 014845 138 GCSECSEVHVAHSGHHIQNCQGAT 161 (417)
Q Consensus 138 ~C~~C~EVHVG~~GH~ir~C~g~k 161 (417)
.|-.| |..||.+++|..++
T Consensus 8 ~C~nC-----gk~GH~ar~C~~pr 26 (29)
T 1nc8_A 8 RCWNC-----GKEGHSARQCRAPR 26 (29)
T ss_dssp BCTTT-----SCBSSCGGGCCSSS
T ss_pred EEEEC-----CccccCHhHCcccc
Confidence 47777 56799999998764
No 2
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.41 E-value=1.1e+02 Score=27.82 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=23.1
Q ss_pred ceEeeeccCCCCCceecCCCCccccccCCccc
Q 014845 132 HVIPVYGCSECSEVHVAHSGHHIQNCQGATAA 163 (417)
Q Consensus 132 ~v~pV~~C~~C~EVHVG~~GH~ir~C~g~k~~ 163 (417)
+...++.|..|.-+|.|...-.=..|++.+..
T Consensus 167 ~~~~~~~C~~CG~i~~g~~p~~CP~C~~~k~~ 198 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKGEDFEKCPICFRPKDT 198 (202)
T ss_dssp CSCCEEECSSSCCEEESSCCSBCTTTCCBGGG
T ss_pred CCCcEEEECCCCCEEcCcCCCCCCCCCCChHH
Confidence 34578999999999998544445567766654
No 3
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=22.05 E-value=31 Score=21.80 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=14.0
Q ss_pred ccCCCCCceecCCCCccccccCCcc
Q 014845 138 GCSECSEVHVAHSGHHIQNCQGATA 162 (417)
Q Consensus 138 ~C~~C~EVHVG~~GH~ir~C~g~k~ 162 (417)
.|-.| |..||.+++|...+.
T Consensus 4 ~Cf~C-----G~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 4 VCFSC-----GKTGHIKRDCKEEXX 23 (26)
T ss_dssp BCTTT-----CCBSSCTTTTTCC--
T ss_pred eeEeC-----CCCCcccccCCCccc
Confidence 46566 567999999987654
No 4
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.12 E-value=2.1e+02 Score=25.54 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=22.1
Q ss_pred EeeeccCCCCCceec-CCCCccccccCCccc
Q 014845 134 IPVYGCSECSEVHVA-HSGHHIQNCQGATAA 163 (417)
Q Consensus 134 ~pV~~C~~C~EVHVG-~~GH~ir~C~g~k~~ 163 (417)
..++.|..|.-||.| ...-.=..|++.+..
T Consensus 153 ~~~~~C~~CG~~~~g~~~p~~CP~C~~~k~~ 183 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGTGAPELCPACAHPKAH 183 (191)
T ss_dssp EEEEEETTTCCEEEEEECCSBCTTTCCBGGG
T ss_pred CceEEECCCCCEeeCCCCCCCCCCCcCCHHH
Confidence 348999999999998 334456677776654
No 5
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=19.56 E-value=60 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.605 Sum_probs=18.9
Q ss_pred eccCCCCCceecCCCCccccccCCcccccc
Q 014845 137 YGCSECSEVHVAHSGHHIQNCQGATAAKRR 166 (417)
Q Consensus 137 ~~C~~C~EVHVG~~GH~ir~C~g~k~~~R~ 166 (417)
..|-+| |..||.+++|--.....|.
T Consensus 11 ~~C~~C-----gk~GH~ardCP~~~~~~r~ 35 (40)
T 1a6b_B 11 DQCAYC-----KEKGHWAKDCPKKPRGPRG 35 (40)
T ss_dssp SSCSSS-----CCTTCCTTSCSSSCCCTTC
T ss_pred CeeeEC-----CCCCcchhhCcCCcccCCC
Confidence 467787 4579999999887766553
No 6
>1una_A GA unassembled coat protein dimer; unassembled virus coat protein dimer, bacteriophage, RNA- binding dimer, translational repressor; 2.80A {Enterobacteria phage GA} SCOP: d.85.1.1 PDB: 1gav_A
Probab=15.81 E-value=30 Score=29.74 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=19.3
Q ss_pred CchhhhhHHHcCCCCCCC-CcccccccccCCCC
Q 014845 379 APAVVEVCMQAGAQVPEQ-YKPTMRLDIIVPES 410 (417)
Q Consensus 379 ~PAVVELCiQAGa~vP~~-y~~~mr~d~~~p~~ 410 (417)
+|-|+- =+|.|+++|.. |++.|.+|..||-.
T Consensus 63 vpkv~t-qv~~gvelpvaawrsy~~meltipif 94 (129)
T 1una_A 63 VPKIVT-QVVNGVELPVSAWKAYASIDLTIPIF 94 (129)
T ss_dssp EECCC--------CCSSCCCEEEEEEEEEEECC
T ss_pred cchhhe-eecCcEEeeHHHHHhhhcceEeeeEE
Confidence 344443 36899999988 99999999999854
No 7
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=15.68 E-value=77 Score=23.83 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=17.8
Q ss_pred cccCCCCCeeecCCCCcccccCCCcccc
Q 014845 309 KACGYCPEVHIGPWGHNVKLCGAFKHQW 336 (417)
Q Consensus 309 ~~C~yC~EVHVG~~GHkir~C~~~k~q~ 336 (417)
-.|-+|.| .||.+++|--.+...
T Consensus 24 ~~C~~Cge-----~GH~ardCp~~~~~~ 46 (56)
T 1u6p_A 24 DQCAYCKE-----KGHWAKDCPKKPRGP 46 (56)
T ss_dssp TBCSSSCC-----BSSCGGGCTTCCCSS
T ss_pred CcceeCCC-----CCcccccCcCCcccc
Confidence 35999966 799999998765433
No 8
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.88 E-value=51 Score=24.74 Aligned_cols=17 Identities=47% Similarity=1.171 Sum_probs=13.4
Q ss_pred eccCCCCCceecCCCCcccccc
Q 014845 137 YGCSECSEVHVAHSGHHIQNCQ 158 (417)
Q Consensus 137 ~~C~~C~EVHVG~~GH~ir~C~ 158 (417)
+.|--| |..||.|++|-
T Consensus 8 ~~C~kC-----Gk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRC-----GKPGHYIKNCP 24 (55)
T ss_dssp CCCTTT-----CCTTSCGGGCS
T ss_pred CccccC-----CCcCcccccCC
Confidence 467777 56899999995
No 9
>1msc_A Bacteriophage MS2 coat protein; translation repressor, viral protein; 2.00A {Enterobacterio phage MS2} SCOP: d.85.1.1 PDB: 2bu1_A* 1u1y_A 1zdi_A 1zdj_A 1zdk_A 1zdh_A* 2c4q_A* 2c4y_A* 2c4z_A* 2c50_A 2c51_A 2iz8_A 2iz9_A* 2izm_A 2izn_A 2ms2_A 5msf_A 6msf_A 7msf_A 1aq3_A ...
Probab=12.62 E-value=42 Score=28.90 Aligned_cols=24 Identities=13% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHcCCCCCCC-CcccccccccCCCC
Q 014845 387 MQAGAQVPEQ-YKPTMRLDIIVPES 410 (417)
Q Consensus 387 iQAGa~vP~~-y~~~mr~d~~~p~~ 410 (417)
+|.|+++|.. |++.|.+|..||-.
T Consensus 71 v~~gvelpvaa~rsy~~meltipif 95 (129)
T 1msc_A 71 TVGGVELPVAARRSYLNMELTIPIF 95 (129)
T ss_dssp SSSSCSSCSSTTCEEEEEEEEEETT
T ss_pred eeCcEEeehHHHHhhccceEeeeEE
Confidence 5789999988 99999999999854
No 10
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=12.48 E-value=98 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=21.6
Q ss_pred ceeeecccCCCCCeeecCCCCcccccCCCcc
Q 014845 304 RKYSVKACGYCPEVHIGPWGHNVKLCGAFKH 334 (417)
Q Consensus 304 ~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~ 334 (417)
.....+.|..|.-||.|-..-.--.|++.|.
T Consensus 167 ~~~~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CSCCEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred CCCcEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 3467899999999999833334445666654
Done!