BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014847
(417 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255548744|ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
Length = 1203
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/514 (54%), Positives = 312/514 (60%), Gaps = 137/514 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCGIIP VLYQ+QKHS QAIGFPTTNPNIRVDTL QL+YPQR
Sbjct: 721 MSFLLGLSCGIIP--FANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQR 778
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + SDCLG+P EDSLVMN+ASLE
Sbjct: 779 PLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 838
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYKA+VDNK++ K R DD +NFGKI SK S
Sbjct: 839 GMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQS 898
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIG+ AE G DHSIKLKHTERG+V KV+LSSND+GKNFAVVS+RQ V S CLGD
Sbjct: 899 GDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ----VRSPCLGD 954
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG AC
Sbjct: 955 KFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACG 1014
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMD 274
G M YATPF+T + IT Q H++ S+ N R
Sbjct: 1015 GSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGE------------------- 1055
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+VRSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGGI+FGEM
Sbjct: 1056 ------MVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1109
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNS 375
+ DCLIAHGAS NLHERL KCKNVANVIQR V GPYCR+C S
Sbjct: 1110 ERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCES 1169
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
D+I+K NVPYGAKLL QEL FSMGI+LKF+T+L
Sbjct: 1170 VDEIVKVNVPYGAKLLCQEL-FSMGISLKFETRL 1202
>gi|224141967|ref|XP_002324332.1| predicted protein [Populus trichocarpa]
gi|222865766|gb|EEF02897.1| predicted protein [Populus trichocarpa]
Length = 1160
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/504 (55%), Positives = 311/504 (61%), Gaps = 126/504 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCGIIP VLYQ+QKHS QAIGF TTNPNIRVDTL QL YPQR
Sbjct: 689 MSFLLGLSCGIIP--FANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQR 746
Query: 61 PLFWILISDCLGRP----------------------EDSLVMNQASLECGVFRSE---SY 95
PLF +ISDCL P EDSLVMN+ASLE G+FRSE SY
Sbjct: 747 PLFRTMISDCLVLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 806
Query: 96 KAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEI 135
KAEVDNK++ K R S+D + FGKIQSK SGDIVIGK AE
Sbjct: 807 KAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAES 866
Query: 136 GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 195
GADHS+KLKHTERG+V KV+LSSND+GKNFAVVS+RQ V S CLGDKFSSMHGQKGV
Sbjct: 867 GADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ----VRSPCLGDKFSSMHGQKGV 922
Query: 196 LGFLE--------------------------QTPAQLLEAALGKG-ACDGLMSYATPFAT 228
LGFLE QTP QLLEAALGKG AC G YATPF+T
Sbjct: 923 LGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFST 982
Query: 229 -STGGVITEQHQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
S +I + H++ S+ N R +VRSL
Sbjct: 983 LSVDDIIDQLHRAKFSRWGNERVYNGRTGE-------------------------MVRSL 1017
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF TFYQ+ +HM+EDKVKFRNTG PLT +PVADRKRFGGI+FGEM+ DCLIAHGAS
Sbjct: 1018 IFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1077
Query: 346 GNLHERL-------------KCKNVANVIQRVV------GGPYCRICNSADDIIKANVPY 386
NLHERL KCKNVANVIQR V GPYCR+C S DD++K +VPY
Sbjct: 1078 ANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPY 1137
Query: 387 GAKLLSQELSFSMGITLKFDTQLS 410
GAKLL QEL FSMGI+LKFDT++S
Sbjct: 1138 GAKLLCQEL-FSMGISLKFDTRVS 1160
>gi|225430474|ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/512 (52%), Positives = 316/512 (61%), Gaps = 133/512 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCGIIP + VLYQS+KHS QAIGF TTNPNIRVDTL QL+YPQR
Sbjct: 716 MSFLLGLSCGIIPYANHDHARR--VLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQR 773
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +ISDCLG+P EDSLVMN+ASLE
Sbjct: 774 PLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLER 833
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYK+EVDN + K R S+D ++FGK+QSK +
Sbjct: 834 GMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQN 893
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIG+ AE G DHSIKLKHTERG+V KV++S+NDDGKNFAVVS+RQ V + CLGD
Sbjct: 894 GDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ----VRTPCLGD 949
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG AC
Sbjct: 950 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACG 1009
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
GL+ +ATPF+T + I +Q H++ S+ + H ++ M
Sbjct: 1010 GLLRHATPFSTLSVDAIADQLHRAGFSR---------------WGHERVYNGRTGEM--- 1051
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+RSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PV+DRKRFGGI+FGEM+
Sbjct: 1052 -----LRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMER 1106
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNSAD 377
DCLIAHGA+ NLHERL +CKN++NVIQR V GPYCR C S++
Sbjct: 1107 DCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSE 1166
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+I+K NVPYGAKLL QEL FSMGI+LKF+TQL
Sbjct: 1167 EIVKVNVPYGAKLLCQEL-FSMGISLKFETQL 1197
>gi|449455519|ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/511 (52%), Positives = 304/511 (59%), Gaps = 131/511 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCG++P L+QSQKHS QAIGF TN N RVDTL QL YPQR
Sbjct: 715 MSFLLGLSCGLVP--FANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQR 772
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + +DCLG P EDSLVMN+ASLE
Sbjct: 773 PLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 832
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYKAEVDNK+ K R SDD +NFGK QSK S
Sbjct: 833 GMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQS 892
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIG+ AE GADHSIKLKHTE+G+V KV+LSSNDDGKN+AVVS+RQ V S CLGD
Sbjct: 893 GDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQ----VRSPCLGD 948
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG A
Sbjct: 949 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAG 1008
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + YATPF+T + IT+Q L+ G G ++
Sbjct: 1009 GSLKYATPFSTPSVDAITDQ--------LHRAGFSRWGSERVYNG--------------R 1046
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++RSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGGI+FGEM+ D
Sbjct: 1047 TGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1106
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNSADD 378
CLIAHGAS NLHERL KCKNVA+VIQR V GPYCR+C S DD
Sbjct: 1107 CLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDD 1166
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
I++ NVPYGAKLL QEL FSMGI LKF+TQL
Sbjct: 1167 IVRVNVPYGAKLLCQEL-FSMGINLKFETQL 1196
>gi|296082132|emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/499 (53%), Positives = 314/499 (62%), Gaps = 121/499 (24%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCGIIP + VLYQS+KHS QAIGF TTNPNIRVDTL QL+YPQR
Sbjct: 752 MSFLLGLSCGIIPYANHDHARR--VLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQR 809
Query: 61 PLFWILISDCLGRPE--------------------DSLVMNQASLECGVFRSE---SYKA 97
PLF +ISD L RPE DSLVMN+ASLE G+FRSE SYK+
Sbjct: 810 PLFRTMISD-LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKS 868
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVDN + K R S+D ++FGK+QSK +GDIVIG+ AE G
Sbjct: 869 EVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGV 928
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV++S+NDDGKNFAVVS+RQ V + CLGDKFSSMHGQKGVLG
Sbjct: 929 DHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ----VRTPCLGDKFSSMHGQKGVLG 984
Query: 198 FLE--------------------------QTPAQLLEAALGKG-ACDGLMSYATPFATST 230
FLE QTP QLLEAALGKG AC GL+ +ATPF+T +
Sbjct: 985 FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLS 1044
Query: 231 GGVITEQ-HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
I +Q H++ S+ + H ++ M +RSLIF
Sbjct: 1045 VDAIADQLHRAGFSR---------------WGHERVYNGRTGEM--------LRSLIFMG 1081
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
TFYQ+ IHM+EDKVKFRNTG PLT +PV+DRKRFGGI+FGEM+ DCLIAHGA+ NLH
Sbjct: 1082 PTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLH 1141
Query: 350 ERL-------------KCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKL 390
ERL +CKN++NVIQR V GPYCR C S+++I+K NVPYGAKL
Sbjct: 1142 ERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKL 1201
Query: 391 LSQELSFSMGITLKFDTQL 409
L QEL FSMGI+LKF+TQL
Sbjct: 1202 LCQEL-FSMGISLKFETQL 1219
>gi|357466021|ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1237
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 270/513 (52%), Positives = 307/513 (59%), Gaps = 136/513 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSC ++P VLYQSQKHS QAIGF TTNPNIRVD L QLFYPQR
Sbjct: 756 MSFLLGLSCSLVP--FANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQR 813
Query: 61 PLFWILISDCLGRP--------------------------------EDSLVMNQASLECG 88
PLF + SDCLG+P EDSLVMN+ASL+ G
Sbjct: 814 PLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRG 873
Query: 89 VFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SG 125
+FRSE SYKAE++NK+ K + +D++NFGKIQSK SG
Sbjct: 874 MFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSG 933
Query: 126 DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
DI+IG+ A+ G DHSIKLKHTERG V KV+LSSND+GKNFAVVS+RQ V S LGDK
Sbjct: 934 DIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQ----VRSPVLGDK 989
Query: 186 FSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDG 218
FSSMHGQKGVLGFLE QTP QLLEAALGKG AC G
Sbjct: 990 FSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVG 1049
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDW 275
+ ATPF+TS+ IT+Q H++ S+ N R
Sbjct: 1050 SLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGE-------------------- 1089
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+VRSLIF TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM+
Sbjct: 1090 -----MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1144
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNSA 376
DCLIAHGAS NL+ERL KCKNVANVI R V GPYCR C SA
Sbjct: 1145 RDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESA 1204
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
DDI+ A+VPYGAKLLSQEL FSMGI LKF+T+L
Sbjct: 1205 DDIVVASVPYGAKLLSQEL-FSMGINLKFETEL 1236
>gi|67515338|gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/511 (51%), Positives = 306/511 (59%), Gaps = 131/511 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLS IIP VLYQS+KHS QA+GF TTNPNIRVDT QL+YPQR
Sbjct: 537 MSFLLGLSAAIIP--FANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQR 594
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF ++SDCLG+P EDSLVMN+ASLE
Sbjct: 595 PLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLER 654
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYKA+VDNK+ K +D +NFGK+QSK +
Sbjct: 655 GMFRSEHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQN 714
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIV+G+ AE GADHSIKLKHTERG+V KV+LS+ND+GKNFAVVS+RQ V + CLGD
Sbjct: 715 GDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQ----VRTPCLGD 770
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG AC
Sbjct: 771 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACG 830
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL YATPF+T + +T+Q L+ G G ++
Sbjct: 831 GLQKYATPFSTLSVDAVTDQ--------LHRAGFSRWGSERVYNG--------------R 868
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ SL+F TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM+ D
Sbjct: 869 TGEMIHSLVFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 928
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNSADD 378
CLIAHGA+ NLHERL KC N+ANVIQR V GPYCR C S ++
Sbjct: 929 CLIAHGAAANLHERLFTLSDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEE 988
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
I++ NVPYGAKLL+QEL FSMGIT+KFDT+L
Sbjct: 989 IVRVNVPYGAKLLAQEL-FSMGITMKFDTEL 1018
>gi|356518213|ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/517 (52%), Positives = 306/517 (59%), Gaps = 140/517 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSC ++P VLYQSQKHS QAIGF TTNPNIRVDTL QL YPQ+
Sbjct: 720 MSFLLGLSCSLVP--FANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQK 777
Query: 61 PLFWILISDCLGRP------------------------------------EDSLVMNQAS 84
PLF + SDCLG+P EDSLVMN+AS
Sbjct: 778 PLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRAS 837
Query: 85 LECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------------ 123
L+ G+FRSE SYK+E+DNK+ K R +D++NF K+QSK
Sbjct: 838 LQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGAN 897
Query: 124 --SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
SGDI+IGK AE GAD+S+KLKHTERG V KV+LSSND+GKNFAVVS+RQ V S
Sbjct: 898 LQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQ----VRSPV 953
Query: 182 LGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG- 214
LGDKFSSMHGQKGVLGFLE QTP QLLEAALGKG
Sbjct: 954 LGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 1013
Query: 215 ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFEC 271
AC G++ ATPF+T + ITEQ H++ S+ N R
Sbjct: 1014 ACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGE---------------- 1057
Query: 272 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+VRSLIF TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRFGGI+F
Sbjct: 1058 ---------MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1108
Query: 332 GEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRI 372
GEM+ DCLIAHGAS NL+ERL KCKNVANVI R V GPYCR
Sbjct: 1109 GEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRH 1168
Query: 373 CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C SADDI+ A+VPYGAKLL QEL FSMGI LKF+TQL
Sbjct: 1169 CESADDIVVAHVPYGAKLLCQEL-FSMGINLKFETQL 1204
>gi|356509878|ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/514 (52%), Positives = 305/514 (59%), Gaps = 137/514 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSC ++P VLYQSQKHS QAIGF TTNPNIRVDTL QL YPQ+
Sbjct: 723 MSFLLGLSCSLVP--FANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQK 780
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + SDCLG+P EDSLVMN+ASL+
Sbjct: 781 PLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQR 840
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYK+E+DNK+ K R +D++NF K+QSK S
Sbjct: 841 GMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQS 900
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IGK AE GAD+S+KLKHTERG V KV+LSSND+GKNFAVVS+RQ V S LGD
Sbjct: 901 GDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQ----VRSPVLGD 956
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG AC
Sbjct: 957 KFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACG 1016
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMD 274
G++ ATPF+T + ITEQ H++ S+ N R
Sbjct: 1017 GILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGE------------------- 1057
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+VRSLIF TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM
Sbjct: 1058 ------MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1111
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNS 375
+ DCLIAHGAS NL+ERL KCK VANVI R V GPYCR C S
Sbjct: 1112 ERDCLIAHGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCES 1171
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
ADDI+ A+VPYGAKLL QEL FSMGI LKF+TQL
Sbjct: 1172 ADDIVVAHVPYGAKLLCQEL-FSMGINLKFETQL 1204
>gi|67515342|gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
Length = 821
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/510 (50%), Positives = 300/510 (58%), Gaps = 131/510 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCG+IP VLYQS+KHS QAIGF TTNP+IRVDT L+YPQRP
Sbjct: 340 SFLLGLSCGLIP--FANHDHARRVLYQSEKHSQQAIGFSTTNPSIRVDTNSHNLYYPQRP 397
Query: 62 LFWILISDCLGRP---------------------------------EDSLVMNQASLECG 88
+F ++SD LG+ EDS+VMN+AS+E G
Sbjct: 398 IFGTMLSDSLGKSKYSSHHKGMLPHPEFFNGQCAIVAVNVHLGYNQEDSIVMNRASMERG 457
Query: 89 VFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SG 125
+FR+E SYKAEVDN D K DD+++FGK +SK +G
Sbjct: 458 MFRTEHVRSYKAEVDNSDAPGKKLKPDDLVDFGKTESKIGRVDSLDDDGFPFIGANLQTG 517
Query: 126 DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
DIVIGK+A G DHSIKLKHTERG+V KV+LSSNDDGKNF VVS+RQ V S CLGDK
Sbjct: 518 DIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDDGKNFGVVSLRQ----VRSPCLGDK 573
Query: 186 FSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDG 218
FSSMHGQKGVLGFLE QTP QLLEAALGKG A G
Sbjct: 574 FSSMHGQKGVLGFLESQENFPFTKEGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGG 633
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
+ YATPF+T + IT Q L+ +G G ++
Sbjct: 634 ALKYATPFSTPSVDDITAQ--------LHRLGFSRWGDERVYDG--------------RT 671
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
V SLIF TFYQ+ HM+EDK+KFRNTG PLT +PVADRKRFGGI+FGEM+ DC
Sbjct: 672 GEKVESLIFMGPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 731
Query: 339 LIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNSADDI 379
LIAHGA+ NLHERL KC+N+ANVIQR V GPYCR C+S +D+
Sbjct: 732 LIAHGAAANLHERLFTLSDSSQMHVCRKCQNMANVIQRSVFGGRKIRGPYCRFCDSVEDV 791
Query: 380 IKANVPYGAKLLSQELSFSMGITLKFDTQL 409
++ NVPYGAKLL QEL FSMGI+LKFDT+L
Sbjct: 792 VRLNVPYGAKLLCQEL-FSMGISLKFDTEL 820
>gi|242041665|ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
gi|241922081|gb|EER95225.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
Length = 1228
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/514 (49%), Positives = 302/514 (58%), Gaps = 139/514 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 747 SFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 804
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 805 LFKTVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 864
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 865 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQT 923
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 924 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 979
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 980 KFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1039
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQ--LLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1040 GTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVLNGRTGE------------------- 1080
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++SLIF TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM
Sbjct: 1081 ------RMQSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1134
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNS 375
+ DCL+AHG++ NLHERL C+ VANV+ R V GPYC C S
Sbjct: 1135 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGFCKS 1194
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++I++ NVPYGAKLL QEL FSMGI LKFDT++
Sbjct: 1195 SENIVRINVPYGAKLLYQEL-FSMGICLKFDTEV 1227
>gi|298566250|ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
subunit [Zea mays]
gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1229
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/514 (49%), Positives = 302/514 (58%), Gaps = 139/514 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 748 SFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 805
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 806 LFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 865
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 866 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQT 924
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 925 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 980
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 981 KFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1040
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFECPMD 274
G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1041 GTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGE------------------- 1081
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
V+SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM
Sbjct: 1082 ------RVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1135
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNS 375
+ DCL+AHG++ NLHERL C+ VANV+ R V GPYC C S
Sbjct: 1136 ERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1195
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++I++ NVPYGAKLL QEL FSMGI LKF+TQ+
Sbjct: 1196 SENIVRINVPYGAKLLYQEL-FSMGICLKFETQV 1228
>gi|66356143|gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
Length = 1170
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/514 (49%), Positives = 302/514 (58%), Gaps = 139/514 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 689 SFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 746
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 747 LFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 806
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 807 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRXDNLDDDGLPYVGASLQT 865
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 866 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 921
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 922 KFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 981
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFECPMD 274
G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 982 GTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGE------------------- 1022
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
V+SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM
Sbjct: 1023 ------RVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1076
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNS 375
+ DCL+AHG++ NLHERL C+ VANV+ R V GPYC C S
Sbjct: 1077 ERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1136
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++I++ NVPYGAKLL QEL FSMGI LKF+TQ+
Sbjct: 1137 SENIVRINVPYGAKLLYQEL-FSMGICLKFETQV 1169
>gi|283443700|gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
largest subunit 2-2 [Zea mays]
Length = 1229
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/514 (49%), Positives = 302/514 (58%), Gaps = 139/514 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 748 SFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 805
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 806 LFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 865
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 866 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQT 924
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 925 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 980
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 981 KFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1040
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFECPMD 274
G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1041 GTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGE------------------- 1081
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
V+SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM
Sbjct: 1082 ------RVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1135
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNS 375
+ DCL+AHG++ NLHERL C+ VANV+ R V GPYC C S
Sbjct: 1136 ERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1195
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++I++ NVPYGAKLL QEL FSMGI LKF+TQ+
Sbjct: 1196 SENIVRINVPYGAKLLYQEL-FSMGICLKFETQV 1228
>gi|242074526|ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
gi|241938382|gb|EES11527.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
Length = 1239
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 250/514 (48%), Positives = 301/514 (58%), Gaps = 139/514 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFL+GLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 758 SFLMGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 815
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 816 LFKTVIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 875
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYK +V+NKD K + ++FGK +SK G
Sbjct: 876 GMFRTEHLRSYKTDVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQT 934
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 935 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 990
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 991 KFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1050
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFECPMD 274
G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1051 GTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGE------------------- 1091
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM
Sbjct: 1092 ------RMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1145
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNS 375
+ DCL+AHG++ NLHERL C+ VANV+ R V GPYC C S
Sbjct: 1146 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1205
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++I++ NVPYGAKLL QEL FSMGI LKFDT++
Sbjct: 1206 SENIVRINVPYGAKLLYQEL-FSMGICLKFDTEV 1238
>gi|51970364|dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 639
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 254/512 (49%), Positives = 299/512 (58%), Gaps = 136/512 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC ++P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 160 LSFLLGVSCAVVP--FANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 217
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF L S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 218 PLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 277
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ E GA
Sbjct: 278 EVDAKDSE-KRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGA 336
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 337 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 392
Query: 198 FLE--------------------------QTPAQLLEAALGKG-AC-----------DGL 219
+LE QTP QLLEAAL KG AC L
Sbjct: 393 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKL 452
Query: 220 MSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDWI 276
+ATPF+T ITEQ H++ S+ N R+
Sbjct: 453 TRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE--------------------- 491
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
++RS+IF TFYQ+ +HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM+
Sbjct: 492 ----MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 547
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSAD 377
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+D
Sbjct: 548 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSD 607
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 608 HVVRVYVPYGAKLLCQEL-FSMGITLNFDTEL 638
>gi|79416709|ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|75335101|sp|Q9LK40.1|RPD2A_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2a;
Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
AltName: Full=Nuclear RNA polymerase E 2; AltName:
Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
2a
gi|9293951|dbj|BAB01854.1| DNA-directed RNA polymerase, subunit B [Arabidopsis thaliana]
gi|57791156|gb|AAW56422.1| polymerase IV second largest subunit [Arabidopsis thaliana]
gi|62183738|gb|AAX73261.1| RNA polymerase IV second-largest subunit [Arabidopsis thaliana]
gi|332643291|gb|AEE76812.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
Length = 1172
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 253/512 (49%), Positives = 298/512 (58%), Gaps = 136/512 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC ++P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 693 LSFLLGVSCAVVP--FANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 750
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF L S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 751 PLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 810
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ E GA
Sbjct: 811 EVDAKDSE-KRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGA 869
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 870 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 925
Query: 198 FLE--------------------------QTPAQLLEAALGKG------------ACDGL 219
+LE QTP QLLEAAL KG A L
Sbjct: 926 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKL 985
Query: 220 MSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDWI 276
+ATPF+T ITEQ H++ S+ N R+
Sbjct: 986 TRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE--------------------- 1024
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
++RS+IF TFYQ+ +HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM+
Sbjct: 1025 ----MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1080
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSAD 377
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+D
Sbjct: 1081 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSD 1140
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1141 HVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1171
>gi|145338664|ref|NP_188437.2| DNA-directed RNA polymerase II subunit B [Arabidopsis thaliana]
gi|332642524|gb|AEE76045.1| DNA-directed RNA polymerase II subunit B [Arabidopsis thaliana]
Length = 1055
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/513 (49%), Positives = 298/513 (58%), Gaps = 137/513 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC I+P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 575 LSFLLGVSCAIVP--FANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 632
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF L S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 633 PLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 692
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ E GA
Sbjct: 693 EVDTKDSE-KRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGA 751
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 752 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 807
Query: 198 FLE--------------------------QTPAQLLEAALGKG-AC------------DG 218
+LE QTP QLLEAAL KG AC
Sbjct: 808 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTK 867
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDW 275
L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 868 LTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE-------------------- 907
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
++RSLIF TFYQ+ +HMSE+KVKFRNTG PLT +PVADRKRFGGI FGEM+
Sbjct: 908 -----MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEME 962
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSA 376
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+
Sbjct: 963 RDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASS 1022
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1023 DHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1054
>gi|75311613|sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2b;
Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b;
AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV
2b
gi|9294064|dbj|BAB02021.1| DNA-dependent RNA polymerase II [Arabidopsis thaliana]
Length = 1119
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 254/513 (49%), Positives = 297/513 (57%), Gaps = 137/513 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC I+P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 639 LSFLLGVSCAIVP--FANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 696
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF L S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 697 PLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 756
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ E GA
Sbjct: 757 EVDTKDSE-KRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGA 815
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 816 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 871
Query: 198 FLE--------------------------QTPAQLLEAALGKG-------------ACDG 218
+LE QTP QLLEAAL KG A
Sbjct: 872 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTK 931
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDW 275
L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 932 LTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE-------------------- 971
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
++RSLIF TFYQ+ +HMSE+KVKFRNTG PLT +PVADRKRFGGI FGEM+
Sbjct: 972 -----MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEME 1026
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSA 376
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+
Sbjct: 1027 RDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASS 1086
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1087 DHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1118
>gi|297830452|ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
gi|297328948|gb|EFH59367.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
Length = 1169
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/513 (49%), Positives = 298/513 (58%), Gaps = 137/513 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC I+P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 689 LSFLLGVSCAIVP--FANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 746
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF + S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 747 PLFKTVASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 806
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ + GA
Sbjct: 807 EVDTKDSE-KRKKMDELVKFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTDSGA 865
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 866 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 921
Query: 198 FLE--------------------------QTPAQLLEAALGKG-------------ACDG 218
+LE QTP QLLEAAL KG A
Sbjct: 922 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIASPIQKKEGSSAAYTK 981
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDW 275
L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 982 LTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE-------------------- 1021
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
++RSLIF TFYQ+ +HMSEDKVKFRNTG PLT +PVAD+KRFGGI+FGEM+
Sbjct: 1022 -----MMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADKKRFGGIKFGEME 1076
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSA 376
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+
Sbjct: 1077 RDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASS 1136
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1137 DHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1168
>gi|413919691|gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 2163
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 251/514 (48%), Positives = 305/514 (59%), Gaps = 139/514 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SF+LGLSCGIIP + VLYQS+KHS QAIG+ T+NP IRVDTL QL+YPQRP
Sbjct: 1682 SFILGLSCGIIPFANHNFARR--VLYQSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRP 1739
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 1740 LFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 1799
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 1800 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQT 1858
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 1859 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 1914
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 1915 KFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1974
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFECPMD 274
G M YATPF T++ VI EQ H++ S+ GA N +G T
Sbjct: 1975 GTMRYATPFTTASVDVIAEQLHKAGYSRW----GAENVLNGRTGE--------------- 2015
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++SL+F TFYQ+ IHMSEDKVK+RNTG PLT +PVADRKRFGG++FGEM
Sbjct: 2016 ------RMKSLVFMGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEM 2069
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNS 375
+ DCL+AHG++ NLHERL C+ VANV+ R V GPYC C S
Sbjct: 2070 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 2129
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++I++ NVPYGAKLL QEL FSMGI LKF+T++
Sbjct: 2130 SENIVRINVPYGAKLLYQEL-FSMGICLKFETEV 2162
>gi|90399221|emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
Length = 1343
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 255/519 (49%), Positives = 310/519 (59%), Gaps = 145/519 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQR
Sbjct: 859 LSFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQR 916
Query: 61 PLFWILISDCLGRPE---------------------------------DSLVMNQASLEC 87
PLF +I+DC+GR E DSLVMN+ASLE
Sbjct: 917 PLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 976
Query: 88 GVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK---------------- 123
G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 977 GMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLDDDGLPYVG 1033
Query: 124 ----SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++RQ V S
Sbjct: 1034 ASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQ----VRS 1089
Query: 180 ACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGK 213
CLGDKFSSMHGQKGV+GFLE QTP QLLEAALGK
Sbjct: 1090 PCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGK 1149
Query: 214 G-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFKHYFLFCLF 269
G A G M YATPF T++ VIT+Q H++ S+ GA + +G T H
Sbjct: 1150 GIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERMH------- 1198
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGG+
Sbjct: 1199 --------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGV 1244
Query: 330 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 370
+FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V GPYC
Sbjct: 1245 KFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYC 1304
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1305 GFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1342
>gi|115460882|ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]
Length = 1270
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/519 (48%), Positives = 310/519 (59%), Gaps = 145/519 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQR
Sbjct: 786 LSFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQR 843
Query: 61 PLFWILISDCLGRPE---------------------------------DSLVMNQASLEC 87
PLF +I+DC+GR E DS+VMN+ASLE
Sbjct: 844 PLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLER 903
Query: 88 GVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK---------------- 123
G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 904 GMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLDDDGLPYVG 960
Query: 124 ----SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++RQ V S
Sbjct: 961 ASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQ----VRS 1016
Query: 180 ACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGK 213
CLGDKFSSMHGQKGV+GFLE QTP QLLEAALGK
Sbjct: 1017 PCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGK 1076
Query: 214 G-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFKHYFLFCLF 269
G A G M YATPF T++ VIT+Q H++ S+ GA + +G T H
Sbjct: 1077 GIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERMH------- 1125
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGG+
Sbjct: 1126 --------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGV 1171
Query: 330 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 370
+FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V GPYC
Sbjct: 1172 KFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYC 1231
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1232 GFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1269
>gi|38344903|emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
Length = 1343
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/519 (48%), Positives = 310/519 (59%), Gaps = 145/519 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQR
Sbjct: 859 LSFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQR 916
Query: 61 PLFWILISDCLGRPE---------------------------------DSLVMNQASLEC 87
PLF +I+DC+GR E DS+VMN+ASLE
Sbjct: 917 PLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLER 976
Query: 88 GVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK---------------- 123
G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 977 GMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLDDDGLPYVG 1033
Query: 124 ----SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++RQ V S
Sbjct: 1034 ASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQ----VRS 1089
Query: 180 ACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGK 213
CLGDKFSSMHGQKGV+GFLE QTP QLLEAALGK
Sbjct: 1090 PCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGK 1149
Query: 214 G-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFKHYFLFCLF 269
G A G M YATPF T++ VIT+Q H++ S+ GA + +G T H
Sbjct: 1150 GIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERMH------- 1198
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGG+
Sbjct: 1199 --------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGV 1244
Query: 330 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 370
+FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V GPYC
Sbjct: 1245 KFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYC 1304
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1305 GFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1342
>gi|38347314|emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
Length = 1316
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/519 (48%), Positives = 310/519 (59%), Gaps = 145/519 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQR
Sbjct: 832 LSFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQR 889
Query: 61 PLFWILISDCLGRPE---------------------------------DSLVMNQASLEC 87
PLF +I+DC+GR E DS+VMN+ASLE
Sbjct: 890 PLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLER 949
Query: 88 GVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK---------------- 123
G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 950 GMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLDDDGLPYVG 1006
Query: 124 ----SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++RQ V S
Sbjct: 1007 ASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQ----VRS 1062
Query: 180 ACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGK 213
CLGDKFSSMHGQKGV+GFLE QTP QLLEAALGK
Sbjct: 1063 PCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGK 1122
Query: 214 G-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFKHYFLFCLF 269
G A G M YATPF T++ VIT+Q H++ S+ GA + +G T H
Sbjct: 1123 GIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERMH------- 1171
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGG+
Sbjct: 1172 --------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGV 1217
Query: 330 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 370
+FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V GPYC
Sbjct: 1218 KFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYC 1277
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1278 GFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1315
>gi|357126199|ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 240/512 (46%), Positives = 293/512 (57%), Gaps = 134/512 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSCG+IP VLYQS+KHS QAIG+ TTNP RVDT QL+YPQR
Sbjct: 732 LSFLLGLSCGLIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQLYYPQR 789
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + +DC+GR EDSLVMN+ASLE
Sbjct: 790 PLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 849
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEV+ K+ +K + ++FGK+QSK S
Sbjct: 850 GMFRTEHIRSYKAEVETKE-PIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQS 908
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIGK +E G DHSIK+KHTE+G+V +VLLS+ND+GKNFAVV++RQ V S C+GD
Sbjct: 909 GDIVIGKVSESGEDHSIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQ----VRSPCVGD 964
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG A
Sbjct: 965 KFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIALG 1024
Query: 218 GLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G M YATPF ++ VI+EQ H++ S+ G S I
Sbjct: 1025 GAMRYATPFTPASLEVISEQLHKAGFSR-----GGAESVINGRTGER------------- 1066
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ SLIF FYQ+ HM+EDKVKFRNTG PLT +PVADRKRFGG++FGEM+
Sbjct: 1067 -----MHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMER 1121
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNSAD 377
DCL+AHGA+ NLHERL C+ VANV+ R V GPYC C S++
Sbjct: 1122 DCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRGVPGGKRIRGPYCGFCRSSE 1181
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+ ++ VPYGAKLL QEL F MGI LKF T++
Sbjct: 1182 NTVRIAVPYGAKLLYQEL-FCMGICLKFQTEI 1212
>gi|357156376|ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 238/511 (46%), Positives = 289/511 (56%), Gaps = 132/511 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSCG+IP VLYQS+KHS QAIG+ TTNP RVDT QL+YPQR
Sbjct: 732 LSFLLGLSCGLIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQLYYPQR 789
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + +DC+GR EDSLVMN+ASLE
Sbjct: 790 PLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 849
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEV+ K+ K + ++FGK+QSK S
Sbjct: 850 GMFRTEHIRSYKAEVETKE-PTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQS 908
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIGK +E G DHSIK+KHTE+G+ +VLLS+ND+GKNFAVV++RQ V S C+GD
Sbjct: 909 GDIVIGKVSESGEDHSIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQ----VRSPCVGD 964
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG A
Sbjct: 965 KFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIALG 1024
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G M YATPF ++ VI+EQ L+ G SG + +
Sbjct: 1025 GAMRYATPFTPASLEVISEQ--------LHKAGFSRSGAESVINGRTGERM--------- 1067
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
SLIF FYQ+ HM+EDKVKFRNTG PLT +PVADRKRFGG++FGEM+ D
Sbjct: 1068 -----HSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERD 1122
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNSADD 378
CL+AHGA+ NLHERL C+ VANV+ R V GPYC C S+++
Sbjct: 1123 CLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRSVPGGKRIRGPYCGFCRSSEN 1182
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
++ VPYGAKLL QEL F MGI LKF T++
Sbjct: 1183 TVRIAVPYGAKLLYQEL-FCMGICLKFQTEI 1212
>gi|357166265|ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1236
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 287/511 (56%), Gaps = 132/511 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLGLSC +IP VLYQS+KHS QAIG+ TTN RVDTL QL+YPQR
Sbjct: 755 LSFLLGLSCSLIP--FANHNFARRVLYQSEKHSQQAIGYSTTNQLTRVDTLSHQLYYPQR 812
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + +DC+GR EDSLVMN+ASLE
Sbjct: 813 PLFKTVTADCIGRSDYTIGRTDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 872
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKA+V+ K+ K + ++FGK+QSK S
Sbjct: 873 GMFRTELIRSYKADVETKE-PAKRLKLKEKVDFGKMQSKRGRVDSLDDDGLPYVGASLQS 931
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+ KNFAVV++RQ V S C+GD
Sbjct: 932 GDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEEKNFAVVTLRQ----VRSPCVGD 987
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG A
Sbjct: 988 KFSSMHGQKGVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALG 1047
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
M YATPF T++ VI+EQ L+ G G +
Sbjct: 1048 SAMRYATPFTTASLEVISEQ--------LHKAGFSGGGTESVLNG--------------Q 1085
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ SLIF FYQ+ HM+EDKVKFRNTG PLT +PVADRKRFGG++FGEM+ D
Sbjct: 1086 TGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERD 1145
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYCRICNSADD 378
CL+AHGA+ NLHERL C+ ANV+ R + GPYC C S+++
Sbjct: 1146 CLLAHGAAANLHERLFMLSDFAQMHICQTCQRAANVVMRAIPGGKKIRGPYCGFCRSSEN 1205
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
++ VPYGAKLL QEL FSMGI LKF T++
Sbjct: 1206 KVRIAVPYGAKLLYQEL-FSMGICLKFKTEV 1235
>gi|242080725|ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
gi|241941481|gb|EES14626.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
Length = 1251
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 233/522 (44%), Positives = 293/522 (56%), Gaps = 153/522 (29%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSC +IP VL Q++K S QAIG+ TN + R+DTL Q+FYPQRP
Sbjct: 768 SFLLGLSCSLIP--FANHDNGKRVLMQAEKISQQAIGYSPTNSHTRLDTLSHQIFYPQRP 825
Query: 62 LFWILISDCLGRPE-----------------------------------DSLVMNQASLE 86
LF ++S LG+ E DSLV+N+ASLE
Sbjct: 826 LFKTVVSYGLGKAETAYSFGRKDDFNTPEYFNGQNAIVSINVHQGFNQEDSLVLNRASLE 885
Query: 87 CGVFRS---ESYKAEVDNKDI--QVKSRPSDDMLNFGKIQSK------------------ 123
G+FR+ +SYKA+V+NK+I ++K R S +NFGK+QSK
Sbjct: 886 RGMFRTLHLKSYKAQVENKEITRRLKHRES---INFGKVQSKRGKVDSLDSEGLPYVGAS 942
Query: 124 --SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
SGDIVIGK +E G DHS KL HTE+G+V KV+LS+NDDG NFA V++RQS S C
Sbjct: 943 LQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQS----RSPC 998
Query: 182 LGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG- 214
+GDKF+SMHGQKGV+G L+ QTP QLLEAALGKG
Sbjct: 999 VGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLEAALGKGI 1058
Query: 215 ACDGLMSYATPFATSTGGVITEQ-HQSFVSQ-----LLNC-IGARNSGITFIFKHYFLFC 267
A G + YATPF T T VITEQ H++ S+ +LN G R
Sbjct: 1059 AMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGEESVLNGQTGER--------------- 1103
Query: 268 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 327
++SL+F TFYQ+ +HM+EDKVKFRNTG P+T +PV D+KRFG
Sbjct: 1104 --------------MKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFG 1149
Query: 328 GIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQR-------VVGG 367
G++FGEM+ DC++AHGA+ NLHERL C+ VANVI R V G
Sbjct: 1150 GVKFGEMERDCMLAHGAAANLHERLFTLSDFSQMHICQACQRVANVIMRPAEGGSKKVHG 1209
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
PYC C SA+ I++ NVPYG+KLL QEL F MGI LKFDT++
Sbjct: 1210 PYCMFCRSAERIVRVNVPYGSKLLYQEL-FCMGICLKFDTEI 1250
>gi|413917248|gb|AFW57180.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1259
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 228/523 (43%), Positives = 286/523 (54%), Gaps = 154/523 (29%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
SFLLGLSC +IP +H +Q Q++K S QAIG+ TN R+DTL Q+FYPQ
Sbjct: 775 SFLLGLSCSLIPFGNHDNARRVQ----MQAEKISQQAIGYSPTNSQYRLDTLSHQMFYPQ 830
Query: 60 RPLFWILISDCLGRP-----------------------------------EDSLVMNQAS 84
RPLF ++S LG EDSLVMN+AS
Sbjct: 831 RPLFRTVVSYGLGEAKTDCSSGRKDDFNTPEYFNGQNAIVSVNVHQGFNQEDSLVMNRAS 890
Query: 85 LECGVFRS---ESYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------------ 123
LE G+FR+ +SYKA+V+NK+I + + ++ +NFGK+QSK
Sbjct: 891 LERGMFRTLHFKSYKAQVENKEITRRLKHREN-INFGKVQSKRGKVDSLDSDGLPYVGAS 949
Query: 124 --SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
SGDIVIGK E G DHS KL HTE+G+V KV+LS+NDDG NFA V++RQS S C
Sbjct: 950 LQSGDIVIGKVTESGEDHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQS----RSPC 1005
Query: 182 LGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG- 214
+GDKF+SMHGQKGV+G L+ QTP QLLEAALGKG
Sbjct: 1006 VGDKFASMHGQKGVVGLLDSQENFPFTSQGIVPDMVINPHGFPTRQTPGQLLEAALGKGI 1065
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G + YATPF T T VI EQ H FC
Sbjct: 1066 ALGGKVRYATPFTTPTVEVIAEQ-----------------------LHKAGFCR------ 1096
Query: 275 WIAFICL-------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 327
W L ++SL+F TFYQ+ +HM+EDKVKFRNTG PLT +PV D+KRFG
Sbjct: 1097 WGEESVLNGQTGERMKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVEDKKRFG 1156
Query: 328 GIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV--------VG 366
G++FGEM+ DC++AHGA+ NLHERL C+ VANVI R V
Sbjct: 1157 GVKFGEMERDCMLAHGAAANLHERLFTLSDFSRMHICQACERVANVIVRAAEGGGGKKVR 1216
Query: 367 GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
GPYC C SA+ +++ +VPYG+KLL QEL FSMGI LKF+T++
Sbjct: 1217 GPYCLFCRSAERVVRVDVPYGSKLLYQEL-FSMGICLKFETEV 1258
>gi|357139731|ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1242
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 223/517 (43%), Positives = 290/517 (56%), Gaps = 144/517 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VL Q++K S QAIG+ +TN RVDTL Q++YPQ+P
Sbjct: 760 SFLLGLSCGIIP--FANHNNARRVLMQAEKLSQQAIGYSSTNSQYRVDTLFHQMYYPQKP 817
Query: 62 LFWILISDCLG-------------RPE-----------------------DSLVMNQASL 85
LF +++DC+G RPE DSLV N+ SL
Sbjct: 818 LFKTVVADCIGKSDHNFGEEDDFTRPENFPYFNGQNAIVSISVHQGFNQEDSLVFNRGSL 877
Query: 86 ECGVFRSE---SYKAEVDNKDI--QVKSRPSDDMLNFGKIQSK----------------- 123
E G+FR++ SYK +++NK++ ++K R + ++FGK QSK
Sbjct: 878 ERGMFRTQHFKSYKTQIENKEVTRRLKYR---EKIDFGKTQSKRGRVDSLDIDGLPYIGA 934
Query: 124 ---SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
SGDIVIGK +E G DHS+KL HTE+G+V KV+LS+NDDGKN AVV++RQ V S
Sbjct: 935 SLQSGDIVIGKVSESGEDHSMKLMHTEKGMVEKVVLSANDDGKNSAVVTLRQ----VRSP 990
Query: 181 CLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG 214
C+GDKF+SMHGQKGV+G L+ QTP QLLEAALGKG
Sbjct: 991 CVGDKFASMHGQKGVVGLLDSQENFPFTFQGIVPDIVINPHGFPTRQTPGQLLEAALGKG 1050
Query: 215 -ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFE 270
A G+ YATPF T + VITEQ H++ S+ + + +N
Sbjct: 1051 IALGGMTRYATPFTTPSVDVITEQLHKAGFSRWGGESVLNGQNGE--------------- 1095
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
++SL+F FYQ+ HM+ DKVK RNTG PLT +PV D+KRFGG++
Sbjct: 1096 ----------RMQSLVFMGPAFYQRLHHMAVDKVKLRNTGPVHPLTRQPVEDKKRFGGVK 1145
Query: 331 FGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-----GPYCRI 372
FGEM+ DCL+AHGA+ N+HERL C+ VANVI R G GPYC
Sbjct: 1146 FGEMERDCLLAHGATANVHERLFRVSDLSEMHICQACQRVANVILRSEGGKKVHGPYCGF 1205
Query: 373 CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C SA++I++ NVPYGA LL +EL F MGI LKF+T++
Sbjct: 1206 CKSAENILRVNVPYGASLLYKEL-FCMGICLKFETEV 1241
>gi|40253865|dbj|BAD05800.1| putative DNA-dependent RNA polymerase II [Oryza sativa Japonica
Group]
Length = 1136
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 223/517 (43%), Positives = 285/517 (55%), Gaps = 142/517 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSC IIP +L Q++K S QAIG+ TTNP RVDT QL+YPQRP
Sbjct: 652 SFLLGLSCSIIP--FANHDTAKRILMQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRP 709
Query: 62 LFWILISDCLG-------------RPE--------------------DSLVMNQASLECG 88
LF + +DCLG RPE DSLV+N+ASLE G
Sbjct: 710 LFKTVAADCLGKRDYTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERG 769
Query: 89 VFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG-------------------- 125
+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 770 MFRTQHFKSYKALIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLPYIGASLQSN 828
Query: 126 DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+ S +GDK
Sbjct: 829 DIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT----RSPRIGDK 884
Query: 186 FSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDG 218
F+SMHGQKGV+GFL+ QTP QLLEAALGKG A G
Sbjct: 885 FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGG 944
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFECPMDW 275
YATPF + + VITEQ H++ S+ + I R
Sbjct: 945 ATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGE-------------------- 984
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
S +FT TFYQ+ HM+EDKVKFRNTG PLT +PV DR+R+GG++FGEM+
Sbjct: 985 -----RAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEME 1039
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQ----------RVVGGPYCRI 372
DCL+AHGA+ NLHERL +C+ A V+ R V GPYCR
Sbjct: 1040 RDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRF 1099
Query: 373 CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 1100 CRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 1135
>gi|125602346|gb|EAZ41671.1| hypothetical protein OsJ_26208 [Oryza sativa Japonica Group]
Length = 1257
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 223/517 (43%), Positives = 285/517 (55%), Gaps = 142/517 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSC IIP +L Q++K S QAIG+ TTNP RVDT QL+YPQRP
Sbjct: 773 SFLLGLSCSIIP--FANHDTAKRILMQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRP 830
Query: 62 LFWILISDCLG-------------RPE--------------------DSLVMNQASLECG 88
LF + +DCLG RPE DSLV+N+ASLE G
Sbjct: 831 LFKTVAADCLGKRDYTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERG 890
Query: 89 VFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG-------------------- 125
+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 891 MFRTQHFKSYKALIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLPYIGASLQSN 949
Query: 126 DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+ S +GDK
Sbjct: 950 DIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT----RSPRIGDK 1005
Query: 186 FSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDG 218
F+SMHGQKGV+GFL+ QTP QLLEAALGKG A G
Sbjct: 1006 FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGG 1065
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLFCLFECPMDW 275
YATPF + + VITEQ H++ S+ + I R
Sbjct: 1066 ATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGE-------------------- 1105
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
S +FT TFYQ+ HM+EDKVKFRNTG PLT +PV DR+R+GG++FGEM+
Sbjct: 1106 -----RAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEME 1160
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQ----------RVVGGPYCRI 372
DCL+AHGA+ NLHERL +C+ A V+ R V GPYCR
Sbjct: 1161 RDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRF 1220
Query: 373 CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 1221 CRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 1256
>gi|67515354|gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
Length = 1123
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 212/422 (50%), Positives = 242/422 (57%), Gaps = 111/422 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCGIIP + VLYQS+KHS QAIGF T NPN RVDT QL+YPQR
Sbjct: 730 MSFLLGLSCGIIPFANHDHARR--VLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQR 787
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +++D LG+P EDSLVMN+ASLE
Sbjct: 788 PLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLER 847
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYKAEVDNK+ K +D +NFGK QSK S
Sbjct: 848 GMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQS 907
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IGK++E GADHS+KLKHTERG+V KVLLS+ND+GKNFAVVS+RQ V S CLGD
Sbjct: 908 GDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQ----VRSPCLGD 963
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG A
Sbjct: 964 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALG 1023
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G YATPF+T + I EQ L G G ++
Sbjct: 1024 GGQKYATPFSTLSVDAIMEQ--------LQGRGFTRWGNERVYNG--------------R 1061
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+V SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGGI+FGEM+ D
Sbjct: 1062 TGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1121
Query: 338 CL 339
CL
Sbjct: 1122 CL 1123
>gi|115475001|ref|NP_001061097.1| Os08g0171600 [Oryza sativa Japonica Group]
gi|113623066|dbj|BAF23011.1| Os08g0171600 [Oryza sativa Japonica Group]
Length = 462
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 211/491 (42%), Positives = 272/491 (55%), Gaps = 140/491 (28%)
Query: 28 QSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG-------------RP 74
Q++K S QAIG+ TTNP RVDT QL+YPQRPLF + +DCLG RP
Sbjct: 2 QAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARP 61
Query: 75 E--------------------DSLVMNQASLECGVFRSE---SYKAEVDNKDIQVKSRPS 111
E DSLV+N+ASLE G+FR++ SYKA ++NK+I + +
Sbjct: 62 EYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHK 121
Query: 112 DDMLNFGKIQSKSG--------------------DIVIGKYAEIGADHSIKLKHTERGLV 151
++ +NFGK SK G DI+IGK ++ G DHSIKL HTE+G+V
Sbjct: 122 EN-INFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIV 180
Query: 152 LKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE----------- 200
KV+LS+ DDG N A V++RQ+ S +GDKF+SMHGQKGV+GFL+
Sbjct: 181 EKVVLSATDDGTNSAFVTLRQT----RSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQG 236
Query: 201 ---------------QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVS 243
QTP QLLEAALGKG A G YATPF + + VITEQ H++ S
Sbjct: 237 IVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGATRYATPFTSPSVEVITEQLHKAGFS 296
Query: 244 QL--LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 301
+ + I R S +FT TFYQ+ HM+E
Sbjct: 297 RWGGESVINGRTGE-------------------------RAASPVFTGPTFYQRLHHMAE 331
Query: 302 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL--------- 352
DKVKFRNTG PLT +PV DR+R+GG++FGEM+ DCL+AHGA+ NLHERL
Sbjct: 332 DKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRL 391
Query: 353 ----KCKNVANVIQ----------RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFS 398
+C+ A V+ R V GPYCR C SA+++++ +VPYGAK+L QEL FS
Sbjct: 392 HVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL-FS 450
Query: 399 MGITLKFDTQL 409
MGI LKFDT+L
Sbjct: 451 MGICLKFDTEL 461
>gi|218195684|gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
Length = 1177
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 207/412 (50%), Positives = 254/412 (61%), Gaps = 110/412 (26%)
Query: 75 EDSLVMNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK--- 123
EDSLVMN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 798 EDSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGR 854
Query: 124 -----------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFA 166
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFA
Sbjct: 855 VDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFA 914
Query: 167 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE-------------------------- 200
VV++RQ V S CLGDKFSSMHGQKGV+GFLE
Sbjct: 915 VVTLRQ----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTR 970
Query: 201 QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGI 256
QTP QLLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G
Sbjct: 971 QTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGR 1026
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T H SLIF TFYQ+ IHM+EDKVKFRNTG PLT
Sbjct: 1027 TGERMH---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT 1065
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQR 363
+PVADRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R
Sbjct: 1066 RQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMR 1125
Query: 364 VVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
V GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1126 PVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1176
>gi|222629653|gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
Length = 1185
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 207/412 (50%), Positives = 254/412 (61%), Gaps = 110/412 (26%)
Query: 75 EDSLVMNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK--- 123
EDSLVMN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 806 EDSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGR 862
Query: 124 -----------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFA 166
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFA
Sbjct: 863 VDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFA 922
Query: 167 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE-------------------------- 200
VV++RQ V S CLGDKFSSMHGQKGV+GFLE
Sbjct: 923 VVTLRQ----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTR 978
Query: 201 QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGI 256
QTP QLLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G
Sbjct: 979 QTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGR 1034
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T H SLIF TFYQ+ IHM+EDKVKFRNTG PLT
Sbjct: 1035 TGERMH---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT 1073
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQR 363
+PVADRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R
Sbjct: 1074 RQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMR 1133
Query: 364 VVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
V GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1134 PVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1184
>gi|67626014|gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
Length = 651
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 201/494 (40%), Positives = 261/494 (52%), Gaps = 115/494 (23%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLL LS G IP + LYQS+KHS QAIG +TNP R DT QLFYPQ+P
Sbjct: 186 SFLLSLSAGFIP--FSNHNLATRTLYQSEKHSKQAIGHYSTNPRARCDTSAHQLFYPQKP 243
Query: 62 LFWILISDCLGR--------------------PEDSLVMNQASLECGVFRS---ESYKAE 98
LF + S+CL + EDSLV N AS++ G+FRS ++ +E
Sbjct: 244 LFKTMSSECLNKMQFFNGQNAIVAVNVHYGYNQEDSLVANHASIDRGLFRSMHFHTFISE 303
Query: 99 VDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGAD 138
D+ D K ++FGK Q+ SGDI+IGK +D
Sbjct: 304 TDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPFIGASLVSGDILIGKVGPQPSD 363
Query: 139 --HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
S+KLKHTE+G V +V++S+NDD K FA V +R+ V S LGDKFSSMHGQKGV+
Sbjct: 364 VNFSLKLKHTEKGRVDQVVMSANDDDKKFARVCLRE----VRSPSLGDKFSSMHGQKGVV 419
Query: 197 GFLE--------------------------QTPAQLLEAALGKG-ACDGLMSYATPFATS 229
GF+E QTP QL E A GK A G++ ATP+
Sbjct: 420 GFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQLFECAFGKAIASSGVVGDATPYGPV 479
Query: 230 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
T ITEQ L+ G + G ++ C ++S IF
Sbjct: 480 TLQYITEQ--------LHRCGYQQWGKEQMYNG--------------RTGCKLQSKIFIG 517
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
T+YQ+ IHM+EDK+K+RN G PLT +PVADRKR GG++FGEM+ DC++AHGA+ NL
Sbjct: 518 PTYYQRLIHMAEDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLL 577
Query: 350 ERL-------------KCKNVANVIQRV-VGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
ERL +C+N+A VI R V GPYC C +A I+K NVPY K+L QEL
Sbjct: 578 ERLFFLSDFSTMHVCRECRNMATVILRDGVRGPYCPFCKTAKHIVKVNVPYACKMLYQEL 637
Query: 396 SFSMGITLKFDTQL 409
FS+G+ L+F T+L
Sbjct: 638 -FSIGMCLRFQTEL 650
>gi|67810790|gb|AAY82004.1| RNA polymerase IV second largest subunit [Arabidopsis thaliana]
Length = 333
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 182/359 (50%), Positives = 210/359 (58%), Gaps = 91/359 (25%)
Query: 112 DDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 171
DD F +GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+R
Sbjct: 4 DDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLR 63
Query: 172 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 205
Q V S CLGDKFSSMHGQKGVLG+LE QTP Q
Sbjct: 64 Q----VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQ 119
Query: 206 LLEAALGKG-AC------------DGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CI 249
LLEAAL KG AC L +ATPF+T ITEQ H++ S+ N
Sbjct: 120 LLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVY 179
Query: 250 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 309
R+ ++RSLIF TFYQ+ +HMSE+KVKFRNT
Sbjct: 180 NGRSGE-------------------------MMRSLIFMGPTFYQRLVHMSENKVKFRNT 214
Query: 310 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKN 356
G PLT +PVADRKRFGGI FGEM+ DCLIAHGAS NLHERL KCK
Sbjct: 215 GPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT 274
Query: 357 VANVIQRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
ANVI+R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 275 YANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 332
>gi|227826379|gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 475
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/320 (52%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ TTNPNIR+DTL Q++YPQR
Sbjct: 159 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQR 216
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 217 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 276
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 277 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 336
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 337 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 392
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 393 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 452
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 453 GTLRYATPFSTPSVESITEQ 472
>gi|227826395|gb|ACP41922.1| RNA polymerase IV, partial [Heliosperma tommasinii]
Length = 380
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SCGIIP VLYQS+KHS QAIG+ TTNPNIR+DTL Q++YPQR
Sbjct: 64 LSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQR 121
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 122 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLER 181
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 182 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 241
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 242 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 297
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 298 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 357
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 358 GTLRYATPFSTPSVESITEQ 377
>gi|227826389|gb|ACP41919.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 376
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SCGIIP VLYQS+KHS QAIG+ TTNPNIR+DTL Q++YPQR
Sbjct: 60 LSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQR 117
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 118 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLER 177
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 178 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 237
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 238 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 293
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 294 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 353
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 354 GTLRYATPFSTPSVESITEQ 373
>gi|227826383|gb|ACP41916.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
Length = 475
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SCGIIP VLYQS+KHS QAIG+ TTNPNIR+DTL Q++YPQR
Sbjct: 159 LSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQR 216
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 217 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLER 276
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 277 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 336
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 337 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 392
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 393 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 452
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 453 GTLRYATPFSTPSVESITEQ 472
>gi|227826381|gb|ACP41915.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 475
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SCGIIP VLYQS+KHS QAIG+ TTNPNIR+DTL Q++YPQR
Sbjct: 159 LSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQR 216
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 217 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLER 276
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 277 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 336
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 337 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 392
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 393 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 452
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 453 GTLRYATPFSTPSVESITEQ 472
>gi|227826393|gb|ACP41921.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 380
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 166/320 (51%), Positives = 192/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SCGIIP VLYQS+KHS QAIG+ TTNPNIR+DTL Q++YPQR
Sbjct: 64 LSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQR 121
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 122 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLER 181
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 182 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 241
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 242 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 297
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 298 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 357
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + I EQ
Sbjct: 358 GTLRYATPFSTPSVESIIEQ 377
>gi|227826391|gb|ACP41920.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 380
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 166/320 (51%), Positives = 192/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SCGIIP VLYQS+KHS QAIG+ TTNP IR+DTL Q++YPQR
Sbjct: 64 LSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYATTNPXIRIDTLSHQMYYPQR 121
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 122 PLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLER 181
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 182 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 241
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 242 GDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ----VRSPCLGD 297
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTPAQLLEAALGKG AC
Sbjct: 298 KFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 357
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 358 GXLRYATPFSTPSVESITEQ 377
>gi|237512136|gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 479
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ +TNPNIR+DTL Q++YPQR
Sbjct: 159 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQR 216
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 217 PLFRSVIADALGKSDYTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 276
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 277 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 336
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 337 GDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ----VRSPCLGD 392
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLG+LE QTPAQLLEAALGKG AC
Sbjct: 393 KFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 452
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 453 GTLRYATPFSTPSVESITEQ 472
>gi|449485305|ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1031
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/320 (52%), Positives = 187/320 (58%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCG++P L+QSQKHS QAIGF TN N RVDTL QL YPQR
Sbjct: 715 MSFLLGLSCGLVP--FANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQR 772
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF + +DCLG P EDSLVMN+ASLE
Sbjct: 773 PLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 832
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYKAEVDNK+ K R SDD +NFGK QSK S
Sbjct: 833 GMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQS 892
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDIVIG+ AE GADHSIKLKHTE+G+V KV+LSSNDDGKN+AVVS+RQ V S CLGD
Sbjct: 893 GDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQ----VRSPCLGD 948
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLGFLE QTP QLLEAALGKG A
Sbjct: 949 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAG 1008
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + IT+Q
Sbjct: 1009 GSLKYATPFSTPSVDAITDQ 1028
>gi|237512142|gb|ACQ99762.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
Length = 474
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ +TNPNIR+DTL Q++YPQR
Sbjct: 159 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQR 216
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+P EDS+VMN+ASLE
Sbjct: 217 PLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 276
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVD+KD R DD ++FGKIQSK S
Sbjct: 277 GMFRTEHIRSYKAEVDDKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGANLQS 336
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 337 GDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ----VRSPCLGD 392
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLG+LE QTPAQLLEAALGKG AC
Sbjct: 393 KFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 452
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 453 GTLRYATPFSTPSVESITEQ 472
>gi|237512131|gb|ACQ99757.1| RNA polymerase IV, partial [Heliosperma tommasinii]
Length = 362
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 192/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ +TNPNIR+DTL Q++YPQR
Sbjct: 47 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQR 104
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+P EDS+VMN+ASLE
Sbjct: 105 PLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 164
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD R DD ++FGKIQSK S
Sbjct: 165 GMFRTEHIRSYKAEVDNKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGANLQS 224
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 225 GDIIIGRCSESGXDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ----VRSPCLGD 280
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLG+LE QTPAQLLEAALGKG AC
Sbjct: 281 KFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 340
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + Y TPF+T + ITEQ
Sbjct: 341 GTLRYTTPFSTPSVESITEQ 360
>gi|237512129|gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]
Length = 363
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 192/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ +TNPNIR+DTL Q++YPQR
Sbjct: 47 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQR 104
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+P EDS+VMN+ASLE
Sbjct: 105 PLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 164
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD R DD ++FGKIQSK S
Sbjct: 165 GMFRTEHIRSYKAEVDNKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGANLQS 224
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 225 GDIIIGRCSESGXDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ----VRSPCLGD 280
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLG+LE QTPAQLLEAALGKG AC
Sbjct: 281 KFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 340
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + Y TPF+T + ITEQ
Sbjct: 341 GTLRYTTPFSTPSVESITEQ 360
>gi|237512138|gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 479
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ +TNPNIR+DTL Q++YPZR
Sbjct: 159 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPZR 216
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+ EDS+VMN+ASLE
Sbjct: 217 PLFRSVIADALGKSDYTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 276
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVDNKD K R DD ++FGKIQSK S
Sbjct: 277 GMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQS 336
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 337 GDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ----VRSPCLGD 392
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLG+LE QTPAQLLEAALGKG AC
Sbjct: 393 KFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 452
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 453 GTLRYATPFSTPSVESITEQ 472
>gi|237512140|gb|ACQ99761.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 443
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 193/320 (60%), Gaps = 89/320 (27%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLG+SCGIIP VLYQS+KHS QAIG+ +TNPNIR+DTL Q++YPQR
Sbjct: 127 MSFLLGVSCGIIP--FANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQR 184
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF +I+D LG+P EDS+VMN+ASLE
Sbjct: 185 PLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 244
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FR+E SYKAEVD+KD R DD ++FGKIQSK S
Sbjct: 245 GMFRTEHIRSYKAEVDDKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGANLQS 304
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ V S CLGD
Sbjct: 305 GDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ----VRSPCLGD 360
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGVLG+LE QTPAQLLEAALGKG AC
Sbjct: 361 KFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIACG 420
Query: 218 GLMSYATPFATSTGGVITEQ 237
G + YATPF+T + ITEQ
Sbjct: 421 GTLRYATPFSTPSVESITEQ 440
>gi|414585187|tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1063
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/320 (50%), Positives = 188/320 (58%), Gaps = 91/320 (28%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 748 SFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 805
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 806 LFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 865
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 866 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQT 924
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 925 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 980
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 981 KFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1040
Query: 218 GLMSYATPFATSTGGVITEQ 237
G M YATPF T++ VI EQ
Sbjct: 1041 GTMRYATPFTTASVDVIAEQ 1060
>gi|283443702|gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
largest subunit 2-3 [Zea mays]
Length = 1094
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/320 (50%), Positives = 188/320 (58%), Gaps = 91/320 (28%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSCGIIP VLYQS+KHS QAIG+ TTNP+IRVDTL QL+YPQRP
Sbjct: 748 SFLLGLSCGIIP--FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 805
Query: 62 LFWILISDCLGRP----------------------------------EDSLVMNQASLEC 87
LF +I+DCLGR EDSLVMN+ASLE
Sbjct: 806 LFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 865
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG------------------- 125
G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 866 GMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQT 924
Query: 126 -DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ V + CLGD
Sbjct: 925 NDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ----VRTPCLGD 980
Query: 185 KFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACD 217
KFSSMHGQKGV+GFLE QTP QLLEAALGKG AC
Sbjct: 981 KFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1040
Query: 218 GLMSYATPFATSTGGVITEQ 237
G M YATPF T++ VI EQ
Sbjct: 1041 GTMRYATPFTTASVDVIAEQ 1060
>gi|109289916|gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Solanum bulbocastanum]
Length = 304
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 166/286 (58%), Gaps = 76/286 (26%)
Query: 174 VNMVH--SACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 205
VN+ H S CLGDKFSSMHGQKGVLG+LE QTP Q
Sbjct: 44 VNLEHVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQ 103
Query: 206 LLEAALGKG-ACDGLMSYATPFAT-STGGVITEQHQSFVSQLLN--CIGARNSGITFIFK 261
LLEA+LGKG A G YATPF+T S ++ + H S+ N R
Sbjct: 104 LLEASLGKGIALGGGEKYATPFSTLSVDAILKQLHGRGFSRWGNERVYNGRTGE------ 157
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
+V SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 158 -------------------MVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 198
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV---- 364
DRKRFGGI+FGEM+ DCLIAHGA+ NLHERL KCKN+ANVIQR
Sbjct: 199 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGG 258
Query: 365 -VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+ GP+CR C S +DI+K +VPYGAKLL QEL FSMGI+LKFDT++
Sbjct: 259 KIRGPFCRFCESVEDIVKVDVPYGAKLLCQEL-FSMGISLKFDTEI 303
>gi|67515340|gb|AAY68199.1| RNA polymerase IV second largest subunit [Isoetes sp. JL-2005]
Length = 623
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 160/471 (33%), Positives = 219/471 (46%), Gaps = 119/471 (25%)
Query: 4 LLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
LL + +IP +H Q+ V+ QS+KH QAIGF +N +R DT +L YPQRP
Sbjct: 182 LLAIGAFVIPFVNHNQS----SRVMQQSRKHCRQAIGFNCSNLRVRCDTTSHELLYPQRP 237
Query: 62 LFWILISDCLGRPE--------------------DSLVMNQASLECGVFRSESYKAEVDN 101
L +GRPE DS+++NQ+SL+ G+FRS + D
Sbjct: 238 LVRTQAMTLIGRPELHNGQNPIVAVLSDTGYNQEDSIILNQSSLDRGMFRSMHFHTHKDA 297
Query: 102 KDIQVKSR---PSDDMLNFGKIQS-----------------KSGDIVIGKYAEIGAD--- 138
+ R PS+ + K QS S D++IGK GAD
Sbjct: 298 LKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHVGAALSSSDVIIGKLFTAGADVRE 357
Query: 139 --HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
S KLKHTERG V +V++++ +D + V +R+ + +GDKFSSMHGQKGV+
Sbjct: 358 VDASQKLKHTERGRVDQVVIAAKNDAETDVKVRLRE----CRTPQVGDKFSSMHGQKGVV 413
Query: 197 GF--------------------------LEQTPAQLLEAALGKGAC-DGLMSYATPFATS 229
G QT QL+E GK A ATPF
Sbjct: 414 GMCFHQEDLPFTRDGIVPDLIINPHAFPTRQTLGQLMECLAGKAAAVSAREQDATPF--- 470
Query: 230 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
E+ S+ L+ G + +G+ C++ + VR +
Sbjct: 471 -----VERSLPRFSEELHKAGFQRTGME---------CMYS---GRVGTRMKVR--VNIG 511
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+TFYQ+ HM+EDK+K+R TGS PLT +P+ DRKR GGI FGEM+ DC+IAHGAS L
Sbjct: 512 VTFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMERDCMIAHGASATLQ 571
Query: 350 ERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYG 387
ERL KC+ A+V Q V P CR C +I++ NVPY
Sbjct: 572 ERLFLLSDPYVMYICTKCRRTASVEQNKV--PRCRFCKCGSNIVRVNVPYA 620
>gi|125560304|gb|EAZ05752.1| hypothetical protein OsI_27986 [Oryza sativa Indica Group]
Length = 1347
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/324 (43%), Positives = 177/324 (54%), Gaps = 91/324 (28%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGLSC IIP +L Q++K S QAIG+ TTNP RVDT QL+YPQRP
Sbjct: 836 SFLLGLSCSIIP--FANHDTAKRILMQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRP 893
Query: 62 LFWILISDCLG-------------RPE--------------------DSLVMNQASLECG 88
LF + +DCLG RPE DSLV+N+ASLE G
Sbjct: 894 LFKTVAADCLGKRDYTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERG 953
Query: 89 VFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG-------------------- 125
+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 954 MFRTQHFKSYKAPIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLPYIGASLQSN 1012
Query: 126 DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+ S +GDK
Sbjct: 1013 DIIIGKVSDCGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT----RSPRIGDK 1068
Query: 186 FSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDG 218
F+SMHGQKGV+GFL+ QTP QLLEAALGKG A G
Sbjct: 1069 FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGG 1128
Query: 219 LMSYATPFATSTGGVITEQ-HQSF 241
YATPF + + VITEQ H F
Sbjct: 1129 ATRYATPFTSPSVEVITEQLHNKF 1152
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 24/119 (20%)
Query: 314 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV 360
PLT +PV DR+R+GG++FGEM+ DCL+AHGA+ NLHERL +C+ A V
Sbjct: 1229 PLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVV 1288
Query: 361 IQ----------RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+ R V GPYCR C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 1289 VSPAVAADGGCGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 1346
>gi|109289915|gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
Length = 1018
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 139/228 (60%), Gaps = 58/228 (25%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
MSFLLGLSCG+IP VLYQS+KHS QAIGF T NPN RVDT QL+YPQR
Sbjct: 767 MSFLLGLSCGLIP--FANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQR 824
Query: 61 PLFWILISDCLGRP---------------------------------EDSLVMNQASLEC 87
PLF ++SD LG+P EDS+VMN+ASLE
Sbjct: 825 PLFGTMLSDSLGKPKCARHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLER 884
Query: 88 GVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK--------------------S 124
G+FRSE SYKAEVDNK+ K +D +NFGK QSK S
Sbjct: 885 GMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQS 944
Query: 125 GDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQ 172
GDI+IGKYAE GADHS+K+KHTERG+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 945 GDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQ 992
>gi|67515344|gb|AAY68201.1| RNA polymerase IV second largest subunit [Lunularia cruciata]
Length = 789
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 236/520 (45%), Gaps = 145/520 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LGLS +IP + + + L+Q+ KHS QAIG TN R DT Q LFYPQ
Sbjct: 302 SLILGLSASVIPFPHRNQSSRN--LFQAHKHSKQAIGVYVTNLACRADTSGQHLFYPQVQ 359
Query: 62 LFWILISDCLGRPE--------------------DSLVMNQASLECGVFRSESYKA--EV 99
L I +CL + E DS++M+Q++L+ G+FR++ Y+
Sbjct: 360 LVKTNIVNCLQKDEIFSGQNAIVAIACYTGYNQEDSIIMDQSALDRGMFRTQHYRTFKSE 419
Query: 100 DNKDIQVKSRPS------------------DDMLNFGKIQSKSGDIVIGKYAEIG----- 136
+ D + +PS DD L + D+++GK
Sbjct: 420 ERSDHETFGKPSAADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKIVTHSQKNTQ 479
Query: 137 -------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
D S +LK E+G V +V+L +++GK A V +R++ +GDKFS M
Sbjct: 480 SADSARLVDTSTRLKAHEKGRVEQVILVQDEEGKKIAKVKLRET----RIPQVGDKFSRM 535
Query: 190 HGQKGVLGFL--------------------------EQTPAQLLEAALGKG-ACDGLMSY 222
HGQKG++G + QT Q+ E+ALGK A G +
Sbjct: 536 HGQKGIVGMVFTQEDLPFTNEGIVPDIIINPHAFPSRQTLGQMCESALGKAIAKRGEQLF 595
Query: 223 ATPF-ATSTGGVITEQ-HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF ST ITE H+S G G+ ++ Y +
Sbjct: 596 ATPFNPASTVESITEALHES---------GYNGWGMETMYNGYTGKAMV----------- 635
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
+ IF TFYQ+ HM EDK+K+R+ G PLT +PV+DRKR GG++FGEM+ DCLI
Sbjct: 636 ---AKIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRKRHGGVKFGEMERDCLI 692
Query: 341 AHGASGNLHERL-------------KCKNVANV-IQRVVGGPYCRIC------------- 373
AHGA+ L ER CK +A++ I R+ P CR C
Sbjct: 693 AHGAAATLQERTFHLSDYHEIHICRSCKQMAHMGIDRI---PTCRFCKEKNKKVVKGKKT 749
Query: 374 ----NSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
++I+K +PY KLL QEL SMGI++ DT++
Sbjct: 750 DKTETKVEEIVKVEIPYACKLLIQELQ-SMGISVGLDTEV 788
>gi|168003281|ref|XP_001754341.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694443|gb|EDQ80791.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 906
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 229/494 (46%), Gaps = 120/494 (24%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S+L+GL IP H Q L+QS KH QAIG TTN R D LFYPQ
Sbjct: 444 SYLMGLGASTIPFLEHNQA----SRNLFQSDKHCKQAIGLYTTNFQSRADASASHLFYPQ 499
Query: 60 RPLFWILISDCLGRP-------------------EDSLVMNQASLECGVFRS---ESYKA 97
+PL + L +P EDS+VMNQAS++ G+FRS ++YK
Sbjct: 500 KPLVTTRAASILQKPELYSGQTVIVAILCYGYNQEDSIVMNQASVDRGLFRSAHYKTYKG 559
Query: 98 EVDNKDIQVK-SRPSDDML------NFGKIQSK----------SGDIVIGKY-AEI---- 135
E + K+IQ + S+PS + + K++ GDIVIGK +E+
Sbjct: 560 E-EKKNIQEQFSKPSTSDVKGWYNKSLDKVEGDGFPCLGEKLVKGDIVIGKVTSEVHNPR 618
Query: 136 GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 195
D S LK ++G V +V+LSS +DG A V +R + + GDKFSSMHGQKGV
Sbjct: 619 QVDSSTHLKVHQKGHVDQVMLSSEEDGHRIAKVRLR----VTRAPQAGDKFSSMHGQKGV 674
Query: 196 LGFL--------------------------EQTPAQLLEAALGKG-ACDGLMSYATPFAT 228
+G L QT Q+LE LGK A G YA PF+
Sbjct: 675 IGALFPQEDLPFTQQGIVPDIIMNPHALPSRQTVGQILECLLGKAIAASGKRRYAIPFS- 733
Query: 229 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
G+ + ++Q L+ G F M ++ L+
Sbjct: 734 ---GI---DNAEAINQYLHEAKLARGGCEF--------------MSNGTTGQRLKVLVTI 773
Query: 289 WITFYQQFIHMSEDKVKFR-NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
TFYQ+ HM+EDK+K+R NTG LT +PV DR GG++FGEM+ DC++ HGAS
Sbjct: 774 GPTFYQRLEHMAEDKIKYRGNTGPVNLLTRQPVKDRNSLGGLKFGEMERDCMLGHGASAT 833
Query: 348 LHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
L ER C+ A + + P C+ C + I++ +PY KLL QE
Sbjct: 834 LRERYFLLSDPYKMYICQSCRRPATMDSSRI--PKCQFCKNGKRIVQVQIPYACKLLWQE 891
Query: 395 LSFSMGITLKFDTQ 408
L SMGI + DT+
Sbjct: 892 L-LSMGICVYMDTK 904
>gi|168053094|ref|XP_001778973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669645|gb|EDQ56228.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1238
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 234/498 (46%), Gaps = 121/498 (24%)
Query: 1 MSFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+S++ GL +IP H Q LYQ++KH QA+GF T+N + R D QLFYP
Sbjct: 774 VSYIFGLGASVIPFLDHNQASRN----LYQAEKHCKQAMGFYTSNLSGRSDCSGHQLFYP 829
Query: 59 QRPLFWILISDCLGRP-------------------EDSLVMNQASLECGVFRS---ESYK 96
Q+PL D L +P EDS++MN+AS++ G+FRS ++Y+
Sbjct: 830 QKPLVTTRTWDYLKKPEITNGQVAIVSIQCCGYNQEDSIIMNRASIDRGLFRSMHFKTYR 889
Query: 97 AEVDNKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKY-AEIG-- 136
E + I+ ++PS D + G K GDI+IGK AE+G
Sbjct: 890 GEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHLGDYLEK-GDIIIGKLTAEMGNP 948
Query: 137 --ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
AD S +L+ E G V +VLLSS +DG A V +R S GDKFSSMHGQKG
Sbjct: 949 KLADSSQRLRAHENGRVDQVLLSSEEDGHRIAKVRLRCS----RRPQAGDKFSSMHGQKG 1004
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPF- 226
V+G + QT QLLE+ LGK A G PF
Sbjct: 1005 VIGAVLNQEDLPFTRQGVVPDIIINPHALPNRQTVGQLLESLLGKLMAVRGTQQSVAPFQ 1064
Query: 227 -ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
++T + + HQS + + +G T + + SL
Sbjct: 1065 KQSATRKFMDQLHQSEYQR--GGSESMTNGTTGM---------------------RLNSL 1101
Query: 286 IFTWITFYQQFIHMSEDKVKFRNT-GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 344
I TFYQ+ HM EDK+K+R + G LT +PV +RK GG++FGEM+ DC+I HGA
Sbjct: 1102 ISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEMERDCMIGHGA 1161
Query: 345 SGNLHER--LKCKNVANVIQRVVGGP----------YCRICNSADDIIKANVPYGAKLLS 392
S L ER L A ++ P +C+ C + +++ +PY KLL
Sbjct: 1162 SVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKFCCTGKHVVQIQIPYSCKLLW 1221
Query: 393 QELSFSMGITLKFDTQLS 410
QEL SMGITL +T+LS
Sbjct: 1222 QEL-LSMGITLFLETKLS 1238
>gi|67515352|gb|AAY68205.1| RNA polymerase IV second largest subunit [Sphagnum sp. JL-2005]
Length = 650
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 219/478 (45%), Gaps = 81/478 (16%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SFLLGL +IP ++ L+QS+KH QAIG+ TN R D+ LFYPQ+P
Sbjct: 183 SFLLGLGAVMIPFLQHNQALRN--LHQSEKHCRQAIGYYCTNLWSRADSSAHHLFYPQKP 240
Query: 62 LFWILISDCLGRPE-------------------DSLVMNQASLECGVFRSESYKAEVDNK 102
L +DCL +PE DS+VMNQAS++ G+FRS YK +
Sbjct: 241 LVTTRAADCLQKPELMNGQVAIVAIQSFAYNQEDSIVMNQASIDRGLFRSAHYKIHRGEE 300
Query: 103 DIQVK---SRPS------------------------DDMLNFGKIQSKSGDIVIGKY-AE 134
V S+PS DD G+IVIGK AE
Sbjct: 301 RKNVDEHFSKPSISDHKGWTHAWSGLDYKACLDKVDDDGFPCVGENLTKGNIVIGKLTAE 360
Query: 135 IG----ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMH 190
G ++ S LK ++G V +VLL++ +DG + V +R + GDKFSS+H
Sbjct: 361 QGRPKLSNTSTHLKLHQKGHVDQVLLANEEDGHRISKVRLR----FTRAPQAGDKFSSLH 416
Query: 191 GQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITE--QHQSFVSQLLNC 248
GQKGV+G + P + L D +++ + T G I E + + C
Sbjct: 417 GQKGVIGAV--FPQEDLPYTRQGIVPDIIINPHALPSRQTFGQIMECLLGEVVATSGKPC 474
Query: 249 IGARNSGITFIFKHYFLFCLFECPMDWIAFICL---VRSLIFTWITFYQQFIHMSEDKVK 305
R + + F + +++ + +LI TFYQ+ HM EDK+K
Sbjct: 475 FATRAETPQRVNELLFQYHYGRGGAEYMCNGTTGMPLEALITMGPTFYQRLDHMVEDKIK 534
Query: 306 FRNTG-SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------------ 352
FR G S PLT +PV DR GG++FGEM+ DC++ HGAS L R
Sbjct: 535 FRGIGGSINPLTHQPVRDRNSLGGVKFGEMERDCMLGHGASSTLRXRYFLLSDPYKMNIC 594
Query: 353 -KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C+ A + + P C C + I++ +PY KLL QEL SMGI++ DT+L
Sbjct: 595 AACRRPATMDTKXT--PKCXXCKNGKRIVQIQIPYACKLLWQEL-LSMGISVYMDTKL 649
>gi|297835422|ref|XP_002885593.1| hypothetical protein ARALYDRAFT_898915 [Arabidopsis lyrata subsp.
lyrata]
gi|297331433|gb|EFH61852.1| hypothetical protein ARALYDRAFT_898915 [Arabidopsis lyrata subsp.
lyrata]
Length = 505
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 106/148 (71%), Gaps = 20/148 (13%)
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++RSLIF TFYQ+ +HMSEDKVKFRNTG PLT + VADRKRFGGI FGEM+ DCLI
Sbjct: 358 MMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQQVADRKRFGGIRFGEMERDCLI 417
Query: 341 AHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSADDIIK 381
AHGAS NLHERL KCK ANVI+R + GPYCR+C S+D +++
Sbjct: 418 AHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVR 477
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQL 409
VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 478 VYVPYGAKLLCQEL-FSMGITLNFDTKL 504
>gi|67515346|gb|AAY68202.1| RNA polymerase IV second largest subunit [Lycopodium sp. JL-2005]
Length = 510
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 200/416 (48%), Gaps = 112/416 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
SF+LGL +IP V+ Q+QKH AIGF +N R DT L+YPQ+
Sbjct: 129 SFILGLGASVIP--FPNHNQSSRVMQQAQKHGKXAIGFYCSNFKSRSDTSSHLLYYPQKQ 186
Query: 62 LFWILISDCLGRPE--------------------DSLVMNQASLECGVFRSESYK----- 96
L S L RPE DS++MNQ+S+E G++R+ Y
Sbjct: 187 LVRTRASALLERPEFTNGQNAIVAIACYSGYNQEDSIIMNQSSIERGLYRTMHYHTFHFD 246
Query: 97 --AEVDNK-------DIQ-VKSRPSDDMLN---FGKIQS--KSGDIVIGKYAEIG----- 136
A VD + D+ + + S+D L+ F I + S DIV GK +
Sbjct: 247 IPANVDEEFRKPSASDVGGTRYQGSNDKLDNEGFPYIGAALSSPDIVAGKVTSVPNSSRL 306
Query: 137 ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
+D S++LKHTE G V +V+LS ++DGK A V +R+S +GDKFSSMHGQKG+L
Sbjct: 307 SDRSVRLKHTEMGRVDRVVLSMDEDGKKHARVRLRES----RMPQVGDKFSSMHGQKGIL 362
Query: 197 GFL--------------------------EQTPAQLLEAALGKGACDG-LMSYATPFATS 229
G + QT Q+LE+ LGK +G + ATP ++
Sbjct: 363 GMVFNQEDLPFTQEGIVPDIIINPHAFPSRQTLGQMLESVLGKAVANGCCQNDATPSSSI 422
Query: 230 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC------LVR 283
+ +T+ LL+ G G EC +C +++
Sbjct: 423 SVESLTD--------LLHRSGYERWGK-------------EC-------MCNGRTGHMLK 454
Query: 284 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ IF TFYQ+ IHM++DK+K+R TG PL+ +PVADRKR GG++FGEM+ DCL
Sbjct: 455 ARIFMGPTFYQRLIHMAQDKLKWRRTGPVHPLSRQPVADRKRHGGVKFGEMERDCL 510
>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1238
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 227/512 (44%), Gaps = 127/512 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 757 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 813
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 814 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 873
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 874 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 933
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 934 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KIPQIGD 989
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 990 KFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECLLSKVSALS 1049
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1050 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1093
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1094 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1147
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1148 CMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1207
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSMAA 416
PY AKLL QEL +M IT + T+ SGVS+ A
Sbjct: 1208 PYAAKLLFQEL-MAMNITPRLYTESSGVSIRA 1238
>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
tenuis ATCC 10573]
Length = 1233
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 229/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 752 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 808
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 809 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 868
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA------ 133
K ++ RPS DD L ++ DI+IGK
Sbjct: 869 EKRQGMKALETFERPSRSDTLRLKHGTYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDA 928
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 929 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 984
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 985 KFASRHGQKGTIGVTYRNEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1044
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1045 GLEGDASPFTDVTA--------EEVSKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1088
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1089 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1142
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1143 CMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRACKNKTNIYQIHI 1202
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SG+S+
Sbjct: 1203 PYAAKLLFQEL-MAMNISPRMYTERSGISV 1231
>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
Length = 1236
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 226/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 755 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 811
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 812 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDL 871
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L I+ DI+IGK I D
Sbjct: 872 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDT 931
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 932 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 987
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 988 KFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1047
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1048 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYHGHTGKKLM-------- 1091
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1092 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1145
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1146 CMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1205
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1206 PYAAKLLFQEL-MAMNISPRLYTERSGVSV 1234
>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
Length = 1291
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 226/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 810 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 866
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 867 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDL 926
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L I+ DI+IGK I D
Sbjct: 927 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDT 986
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 987 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 1042
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 1043 KFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1102
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1103 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYHGHTGKKLM-------- 1146
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1147 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1200
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1201 CMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1260
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1261 PYAAKLLFQEL-MAMNISPRLYTERSGVSV 1289
>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
7435]
Length = 1227
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 153/512 (29%), Positives = 226/512 (44%), Gaps = 127/512 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LAKTQAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 K---------DIQVKSRPSDDMLNFGK-------------IQSKSGDIVIGKYA------ 133
+ + + +R + L G ++ DI+IGK
Sbjct: 863 EKRFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIAPGVRVSGDDIIIGKTTPIPPDT 922
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N +G F V +R + +GD
Sbjct: 923 EELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTT----KVPQIGD 978
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K G+
Sbjct: 979 KFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVGSIR 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1039 GYEGDATPFTDLTVDA--------VSNLLRDNGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1137 CMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQLHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSMAA 416
PY AKLL QEL +M I + T+ SGVSM +
Sbjct: 1197 PYAAKLLFQEL-MAMNIAPRLYTERSGVSMRS 1227
>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
Length = 1228
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 223/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 747 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYAVRMDTMANILYYPQKP 803
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 804 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 863
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 864 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 923
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 924 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 979
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 980 KFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1039
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T I S+LL G ++ G ++ + L
Sbjct: 1040 GLEGDASPFTDVTAEAI--------SKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1083
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1084 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1137
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A VI + + CR C + +I + ++
Sbjct: 1138 CMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKTNIYQIHI 1197
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M IT + T+ SG S+
Sbjct: 1198 PYAAKLLFQEL-MAMNITPRLYTESSGASI 1226
>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
Length = 1291
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 227/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 810 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 866
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 867 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDL 926
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
E+++ + + +++K + DD L I+ DI+IGK I D
Sbjct: 927 EKRQGMKALETFEKPLRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDT 986
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 987 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 1042
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 1043 KFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1102
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1103 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYHGHTGKKLM-------- 1146
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1147 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1200
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1201 CMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1260
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1261 PYAAKLLFQEL-MAMNISPRLYTERSGVSV 1289
>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
Length = 858
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 226/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 377 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYSVRMDTMANILYYPQKP 433
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 434 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 493
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 494 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 553
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 554 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KIPQIGD 609
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 610 KFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 669
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 670 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYNGHTGKKLM-------- 713
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 714 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 767
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 768 CMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHI 827
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SG+S+
Sbjct: 828 PYAAKLLFQEL-MAMNISPRLYTERSGISV 856
>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 227/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 752 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 808
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 809 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 868
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 869 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 928
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 929 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 984
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 985 KFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1044
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T I S+LL G ++ G ++ + L
Sbjct: 1045 GLEGDASPFTDVTVEAI--------SKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1088
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1089 ------AQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1142
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1143 CMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1202
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SG+S+
Sbjct: 1203 PYAAKLLFQEL-MAMNISPRLYTERSGISV 1231
>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
Length = 1262
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 157/512 (30%), Positives = 223/512 (43%), Gaps = 131/512 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q +SQLL G + G ++ + L
Sbjct: 1072 ITGQEGDATPFT----DVTVDQ----ISQLLEDAGYQKRGFEIMYNGHTGKKL------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
DC+IAHGA+ L ERL C ++ + Q G CR C++ I +
Sbjct: 1170 RDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQLKKGLYECRPCHNKTRISQI 1229
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL +M I + T SG+S+
Sbjct: 1230 HIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
Length = 1232
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 228/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 751 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYAVRMDTMANILYYPQKP 807
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 808 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 867
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA------ 133
K ++ +P+ DD L ++ DI+IGK
Sbjct: 868 EKRQGMKALETFEKPTRSDTLRLRHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDA 927
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 928 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KIPQIGD 983
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 984 KFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1043
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1044 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1087
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1088 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1141
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1142 CMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1201
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1202 PYAAKLLFQEL-MAMNISPRLYTERSGVSI 1230
>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
Length = 1228
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 747 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYAVRMDTMANILYYPQKP 803
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G FRS +++ +D
Sbjct: 804 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGFFRSLFFRSYMDL 863
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 864 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 923
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 924 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 979
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 980 KFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1039
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T I S+LL G ++ G ++ + L
Sbjct: 1040 GLEGDASPFTDVTAEAI--------SKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1083
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1084 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1137
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A VI + + CR C + +I + ++
Sbjct: 1138 CMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKTNIYQIHI 1197
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M IT + T+ SG S+
Sbjct: 1198 PYAAKLLFQEL-MAMNITPRLYTESSGASI 1226
>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 154/509 (30%), Positives = 226/509 (44%), Gaps = 127/509 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 752 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 808
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 809 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 868
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 869 EKRQGMKALETFEKPSRSDTLKLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 928
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 929 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KIPQIGD 984
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 985 KFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1044
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1045 GLEGDASPFTDVTVEA--------VSKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1088
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1089 ------AQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1142
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1143 CMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1202
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVS 413
PY AKLL QEL +M I+ + T+ SG+S
Sbjct: 1203 PYAAKLLFQEL-MAMNISPRLYTERSGIS 1230
>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1267
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/515 (29%), Positives = 224/515 (43%), Gaps = 130/515 (25%)
Query: 2 SFLLGLSCGIIP--SHLQT---MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLF 56
S +LG+ IIP H Q T YQS QA+G TN ++R+DT+ L+
Sbjct: 780 SMILGICASIIPFPDHNQANSVATKSPRNCYQS-AMGKQAMGVFLTNFDVRMDTMANILY 838
Query: 57 YPQRPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYK 96
YPQ+PL + L EDS++MNQ+S++ G+FRS Y+
Sbjct: 839 YPQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYR 898
Query: 97 AEVDNKD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAE 134
A D + ++ +P DD + ++ DI+IGK A
Sbjct: 899 AYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVTGADIIIGKTAP 958
Query: 135 IGADH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
I D S L+ TE GLV +VLL++N +G F V +R +
Sbjct: 959 IAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT----KI 1014
Query: 180 ACLGDKFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGK 213
+GDKF+S HGQKG +G +++Q T A L+E L K
Sbjct: 1015 PQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK 1074
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
+ GL ATPF TE VS+LL G + G ++ + +
Sbjct: 1075 VSSLRGLEGDATPF--------TEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMM--- 1123
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FG
Sbjct: 1124 -----------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFG 1172
Query: 333 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 379
EM+ DC+I+HGAS L ERL C + + + G CR C + I
Sbjct: 1173 EMERDCMISHGASAFLKERLFEVSDAFRVHICDICGLMTPIAKINTGSFECRPCKNKTKI 1232
Query: 380 IKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+ ++PY AKLL QEL+ +M I + T+ SG+++
Sbjct: 1233 SQIHIPYAAKLLFQELA-AMNIATRMFTKRSGITV 1266
>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1196
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 149/490 (30%), Positives = 217/490 (44%), Gaps = 128/490 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TTN +R+DTL L+YPQ+P
Sbjct: 727 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNYQLRMDTLAHVLYYPQKP 783
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDSLVMNQ+S++ G FRS Y++ VD+
Sbjct: 784 LITTHSMEHLHFRKLPSGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFRSVFYRSYVDS 843
Query: 102 K------DIQVKSRPSDDML-----NFGKIQSK---------SGD-IVIGKYAEIGA--- 137
+ D + + +D + ++ KI+ SGD I+IGK +
Sbjct: 844 EKHMGQYDEEFEKPIREDTMGMRHGSYEKIEDDGLIAPGTRVSGDDIIIGKTTPVSPNEE 903
Query: 138 ----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D SI ++ +E G++ KV+LS+N DG F V +R V + +GDKFS
Sbjct: 904 DTRAQRFSKKDSSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRS----VRTPQIGDKFS 959
Query: 188 SMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGLM 220
S HGQKG +G + E P QL+E +GK A G
Sbjct: 960 SRHGQKGTVGIMYRQEDMPFNIEGITPDIIVNPHAIPSRMTIGQLIECLMGKVSATTGEE 1019
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +T +S LL+ +G + G ++ + L
Sbjct: 1020 GDATPFTNTT--------VESISDLLHGVGYQRRGNEVMYNGHTGRKL------------ 1059
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
+ F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+I
Sbjct: 1060 --EAQFFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1117
Query: 341 AHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKANVP 385
+HGA+ L ERL ++ +AN+ + CR C + I + ++P
Sbjct: 1118 SHGAAQFLKERLYDQSDAYRVHVCDLCGMIAIANLRKNTFE---CRSCRNKTQISQVHIP 1174
Query: 386 YGAKLLSQEL 395
Y KLL QEL
Sbjct: 1175 YACKLLFQEL 1184
>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
Y-27907]
Length = 1238
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 227/507 (44%), Gaps = 127/507 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 757 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 813
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 814 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 873
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA------ 133
K ++ +PS DD L ++ DI+IGK
Sbjct: 874 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 933
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 934 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 989
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K A
Sbjct: 990 KFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSALS 1049
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1050 GLEGDASPFTDVTAEA--------VSRLLREHGYQSRGFEVMYNGHTGKKLM-------- 1093
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1094 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1147
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1148 CMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1207
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSG 411
PY AKLL QEL +M I+ + T+ SG
Sbjct: 1208 PYAAKLLFQEL-MAMNISPRMYTERSG 1233
>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1240
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 227/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 759 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 815
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 816 LATTRSMEYLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 875
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS +D L I+ DI+IGK I AD
Sbjct: 876 EKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADT 935
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 936 EELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTT----KIPQIGD 991
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K +
Sbjct: 992 KFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1051
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I ++LL G ++ G ++ + L
Sbjct: 1052 GFEGDASPFTDVTAEAI--------AKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1095
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1096 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1149
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1150 CMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1209
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1210 PYAAKLLFQEL-MAMNISPRLYTERSGVSI 1238
>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
[Botryotinia fuckeliana]
Length = 1260
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 780 SMILGICASIIPFPDHNQSPRN--CYQS-AMGKQAMGVFLTNFDVRMDTMANILYYPQKP 836
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 837 LATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 896
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A I D
Sbjct: 897 EKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDS 956
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE GLV +VL+++N +G F V +R + +GD
Sbjct: 957 EEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTT----KIPQIGD 1012
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G +++Q T A L+E L K
Sbjct: 1013 KFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLR 1072
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G + G ++ + +
Sbjct: 1073 GLEGDATPF--------TEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMM-------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1170
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+I+HGAS L ERL C + + + G CR C + I + ++
Sbjct: 1171 CMISHGASAFLKERLFEVSDAFRVHICDICGLMTPIAKINTGSFECRPCKNKTKISQIHI 1230
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T+ SG+++
Sbjct: 1231 PYAAKLLFQELA-AMNIATRMFTKRSGITV 1259
>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
Length = 1360
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 879 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 935
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 936 LATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 995
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I D
Sbjct: 996 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDA 1055
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 1056 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1111
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA +
Sbjct: 1112 KFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAIE 1171
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF + +Q +S++L G + G ++ + +
Sbjct: 1172 GREGDATPFT----DITVDQ----ISEILESKGYQKRGFEIMYNGHTGKKM--------- 1214
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1215 -----RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1269
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGA+ L ERL C ++ + Q G CR C + I + ++
Sbjct: 1270 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQLKKGQYECRPCQNKTRISQIHI 1329
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1330 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1358
>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 215/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 741 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 797
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 798 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 857
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
VK RP+ DD L + D++IGK + I
Sbjct: 858 EKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDD 917
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 918 AQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 973
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 974 SSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1033
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1034 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRKLT---------- 1075
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1076 ----AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1131
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL KC +A I + + CR C + DI++ ++P
Sbjct: 1132 IAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1189
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + TQ
Sbjct: 1190 YACKLLFQEL-MAMAIAPRMLTQ 1211
>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1260
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 226/512 (44%), Gaps = 131/512 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN N+R+DT+ L+YPQ
Sbjct: 780 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVTLTNYNVRMDTMANVLYYPQ 834
Query: 60 RPLFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + I+ G EDS++MNQ+S++ G+FRS ++A +
Sbjct: 835 KPLATTRSMEFLRFRDLPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYM 894
Query: 100 DNKD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA---- 133
D + ++ +P+ DD + + DI+IGK A
Sbjct: 895 DQEKRVGMSVVEAFEKPTRSDTMRMKQGSYDKLDDDGIVAPGARVSGDDIIIGKTAPMPP 954
Query: 134 ---EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
E+G D S L+ TE GL+ +VLL++N +G F V +R V V +
Sbjct: 955 DAEELGQRTKLHVKRDVSTPLRSTENGLIDQVLLTTNTEGLRF--VKVRTRVTKVPQ--I 1010
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1011 GDKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGA 1070
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T + VSQ+L G + G ++ + L
Sbjct: 1071 LQGQEGDATPFTDVT--------VTSVSQILAAAGFQQRGFEVMYNGHTGKKL------- 1115
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1116 -------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1168
Query: 336 CDCLIAHGASGNLHERLK----------CK--NVANVIQRVVGGPY-CRICNSADDIIKA 382
DC+IAHGAS L ERL C+ + I + + CR C + I +
Sbjct: 1169 RDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIASIKKQQFECRPCKNKTKIAQV 1228
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+PY AKLL QEL+ +M + + T SG+S+
Sbjct: 1229 IIPYAAKLLFQELA-AMNVATRMFTDRSGISI 1259
>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 156/503 (31%), Positives = 215/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 737 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 793
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 794 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 853
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
VK RP+ DD L + D++IGK + I
Sbjct: 854 EKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDD 913
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 914 AQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 969
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 970 SSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1029
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1030 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFETMYNGHTGRKL----------- 1070
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1071 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1127
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL KC +A I + + CR C + DI++ ++P
Sbjct: 1128 IAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1185
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + TQ
Sbjct: 1186 YACKLLFQEL-MAMAIAPRMLTQ 1207
>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1278
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 219/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN N R+DT+ L+YPQ+P
Sbjct: 798 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYNKRMDTMANILYYPQKP 854
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRS--------- 92
L I+ C EDS++MNQ+S++ G+FRS
Sbjct: 855 LGITRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDA 914
Query: 93 ---------ESYKAEVDNKDIQVKSRPSDDMLNFGKI----QSKSGDIVIGKYAEIGADH 139
E ++ +++K D + + G + + DI+IGK A I D+
Sbjct: 915 EKRVGINLVEKFEKPYRQDTLRLKQGTYDKLEDDGIVAPGTRVSGEDIIIGKTAPIQPDN 974
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++N DG + V +R + +GD
Sbjct: 975 QELGQRTVQHVKRDASTPLRSTESGIVDQVILTTNQDGLKYVKVRVRTT----KIPQIGD 1030
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1031 KFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVATIK 1090
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS+LL ++ G ++ + L
Sbjct: 1091 GFEGDATPF--------TEVTVDSVSKLLREYDYQSRGFEVLYHGHTGRKL--------- 1133
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1134 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERD 1188
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGA+ L ERL C + + G CR C + I + ++
Sbjct: 1189 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIADLTKGTFECRPCKNKTKIAQVHI 1248
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1249 PYAAKLLFQELA-AMNIATRMFTDRSGVSI 1277
>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 1194
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 711 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
VK RP DD L + D++IGK I
Sbjct: 828 EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEE 887
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 888 AQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 943
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 944 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1004 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1044
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1045 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1159
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1160 YACKLLFQEL-MAMAIAPRMLTK 1181
>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 156/504 (30%), Positives = 212/504 (42%), Gaps = 130/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 717 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 773
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 774 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 833
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 834 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDD 893
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 894 AQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 949
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 950 SSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1009
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1010 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFETMYNGHTGRRL----------- 1050
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1051 ---SSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1107
Query: 340 IAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANV 384
IAHGA+ L ERL C+ +AN+ + CR C + DI++ ++
Sbjct: 1108 IAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFE---CRGCKNKTDIVQVHI 1164
Query: 385 PYGAKLLSQELSFSMGITLKFDTQ 408
PY KLL QEL SM I + T+
Sbjct: 1165 PYACKLLFQEL-MSMAIAPRMLTK 1187
>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
Length = 1229
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 221/511 (43%), Gaps = 129/511 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 748 SMILGILASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYDVRMDTMANILYYPQKP 804
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+VMNQ+S++ G+FRS +++ +D
Sbjct: 805 LATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGLFRSLFFRSYMDQ 864
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P+ DD L ++ DI+IGK A I D
Sbjct: 865 ERRVGMSVVEEFEKPTRADTLRMKHGTYDKLDDDGLVCPGVRVSGEDIIIGKTAPIPPDA 924
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N +G F V +R + +GD
Sbjct: 925 EELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTT----KIPQIGD 980
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K +C
Sbjct: 981 KFASRHGQKGTIGVTYRHEDMPFSAEGVVPDIIINPHAIPSRMTVAHLIECLLSKVSCLS 1040
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK-HYFLFCLFECPMDWI 276
GL ATPF T I S+LL G ++ G ++ H + +C
Sbjct: 1041 GLEGDATPFTDVTVDAI--------SKLLRSHGYQSRGFEVMYHGHTGKKIMAQC----- 1087
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1088 ----------FLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSREGGLRFGEMER 1137
Query: 337 DCLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKAN 383
DC+IAHGA+ L ERL + A NVI + + CR C + I +
Sbjct: 1138 DCMIAHGAAAFLKERLMEASDAFRIHVCGVCGSMNVIANLKKNQFECRSCRNKTKIYQVQ 1197
Query: 384 VPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+PY AKLL QEL +M I + + SG S+
Sbjct: 1198 IPYAAKLLFQEL-MAMNIAPRLFSDRSGYSV 1227
>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
Length = 1188
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 212/501 (42%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 709 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 766 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 825
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 826 EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 885
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 886 AQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 941
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 942 SSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1001
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1002 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGHTGRPL----------- 1042
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1043 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1099
Query: 340 IAHGASGNLHERLKCKNVANVIQ--RVVG----------GPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL ++ A + V G CR C + DI++ +PY
Sbjct: 1100 IAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1159
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 1160 CKLLFQEL-MSMAIAPRMLTK 1179
>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/501 (30%), Positives = 209/501 (41%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 716 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 772
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 773 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 832
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
VK RP DD L + D++IGK I
Sbjct: 833 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEE 892
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 893 AQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 948
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 949 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1008
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1009 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1049
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1050 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1106
Query: 340 IAHGASGNLHERL------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL +C + + CR C + DI++ +PY
Sbjct: 1107 IAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYA 1166
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL +M I + T+
Sbjct: 1167 CKLLFQEL-MAMAIAPRMFTK 1186
>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 212/501 (42%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 709 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 766 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 825
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 826 EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 885
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 886 AQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 941
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 942 SSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1001
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1002 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGHTGRPL----------- 1042
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1043 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1099
Query: 340 IAHGASGNLHERLKCKNVANVIQ--RVVG----------GPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL ++ A + V G CR C + DI++ +PY
Sbjct: 1100 IAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1159
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 1160 CKLLFQEL-MSMAIAPRMLTK 1179
>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 212/501 (42%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 709 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 766 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 825
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 826 EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 885
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 886 AQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 941
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 942 SSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1001
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1002 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGHTGRPL----------- 1042
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1043 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1099
Query: 340 IAHGASGNLHERLKCKNVANVIQ--RVVG----------GPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL ++ A + V G CR C + DI++ +PY
Sbjct: 1100 IAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1159
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 1160 CKLLFQEL-MSMAIAPRMLTK 1179
>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
Length = 1275
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 154/509 (30%), Positives = 228/509 (44%), Gaps = 127/509 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 795 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 851
Query: 62 LF------------------WILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 852 LAKTQSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 911
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD L ++ DI+IGK
Sbjct: 912 ERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDGLIAPGVRVSGDDIIIGKTVPIPPDT 971
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N +G FA V +R + +GD
Sbjct: 972 EELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTT----KVPQIGD 1027
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGKGAC-D 217
KF+S HGQKG +G F Q T A L+E L K A
Sbjct: 1028 KFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLSKVASMR 1087
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1088 GYEGDATPFTDLTVDA--------VSKLLRENGYQSRGFEVMYNGHTGKKLM-------- 1131
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G +Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1132 ------AQVFFGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERD 1185
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + C+ C + +I + ++
Sbjct: 1186 CMIAHGAAGFLKERLMDSSDAFRVHICGICGLMSVIANLKKNQFECKSCKNKTNIYQIHI 1245
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVS 413
PY AKLL QEL SM I + TQ SGV+
Sbjct: 1246 PYAAKLLFQEL-MSMNIAPRLYTQKSGVT 1273
>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 781 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 837
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 838 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 898 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 958 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAIT 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1074 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1172 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1231
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1232 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
Length = 1262
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 221/512 (43%), Gaps = 131/512 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRK----TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF TE +S LL G + G ++ + +
Sbjct: 1072 ITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKA 382
DC+IAHGA+ L ERL + A + I + G Y CR C++ I +
Sbjct: 1170 RDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQI 1229
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL +M I + T SG+S+
Sbjct: 1230 HIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 781 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 837
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 838 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 898 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 958 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAIT 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1074 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1172 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1231
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1232 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 781 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 837
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 838 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 898 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 958 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAIT 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1074 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1172 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1231
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1232 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 155/502 (30%), Positives = 211/502 (42%), Gaps = 128/502 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DT+ L+YPQ+P
Sbjct: 708 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTVAYVLYYPQKP 764
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 765 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 824
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D+VIGK I D
Sbjct: 825 EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDE 884
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 885 AQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 940
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 941 SSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1000
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1001 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1041
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1042 ---TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRIHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1156
Query: 386 YGAKLLSQELSFSMGITLKFDT 407
Y KLL QEL SM I + T
Sbjct: 1157 YACKLLFQEL-MSMAIAPRMLT 1177
>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
Length = 1252
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 771 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 827
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 828 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 887
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 888 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 947
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 948 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1003
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1004 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAIT 1063
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1064 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1106
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1107 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1161
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1162 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1221
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1222 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1250
>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 156/501 (31%), Positives = 211/501 (42%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 709 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 766 LVTTRAMEHLHFRQLPAGINANVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 825
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 826 EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 885
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 886 AQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 941
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 942 SSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1001
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1002 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGHTGRPL----------- 1042
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1043 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1099
Query: 340 IAHGASGNLHERLKCKNVANVIQ--RVVG----------GPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL ++ A + V G CR C + DI++ +PY
Sbjct: 1100 IAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1159
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 1160 CKLLFQEL-MSMAIAPRMLTK 1179
>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 781 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 837
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 838 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 898 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 958 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAIT 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1074 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1172 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1231
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1232 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 221/512 (43%), Gaps = 131/512 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF TE +S LL G + G ++ + +
Sbjct: 1072 ITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKA 382
DC+IAHGA+ L ERL + A + I + G Y CR C++ I +
Sbjct: 1170 RDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQI 1229
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL +M I + T SG+S+
Sbjct: 1230 HIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 781 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 837
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 838 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 898 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 958 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAIT 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1074 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1172 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1231
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1232 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 781 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 837
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 838 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I AD
Sbjct: 898 EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 958 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAIT 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S LL G + G ++ + +
Sbjct: 1074 GQEGDATPF--------TEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKM--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A + I + G Y CR C++ I + ++
Sbjct: 1172 CMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHI 1231
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I + T SG+S+
Sbjct: 1232 PYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|67515348|gb|AAY68203.1| RNA polymerase IV second largest subunit [Psilotum nudum]
Length = 364
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 183/387 (47%), Gaps = 97/387 (25%)
Query: 75 EDSLVMNQASLECGVFRSESY---KAEVDNKDIQVKSRPSDDMLN-------FGKIQSK- 123
EDS+VMNQ+S++ G+F S Y + E+D +D + +PS +N + K+ S
Sbjct: 5 EDSIVMNQSSIDRGLFNSMHYYGFRVELDGEDESL-MKPSVSDINSAXQSSQYSKLDSDG 63
Query: 124 ---------SGDIVIGKYA-----EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 169
S DI+IGK + + D S+KLK TE+G V +V L+ NDD K V
Sbjct: 64 LPYIGANLFSYDIIIGKESLEPVNNVFKDTSVKLKSTEKGRVDQVXLTVNDDEKKIVKVR 123
Query: 170 IRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTP 203
+R+ +GDKFSS+HGQKGV+G QT
Sbjct: 124 LRER----RLPVVGDKFSSLHGQKGVIGGTFSQEELPFTKNGIVPDIIINPHAFPSRQTV 179
Query: 204 AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK- 261
AQLLE L K + G ATPF+ I E+ L+ +G N G +
Sbjct: 180 AQLLEIGLAKVTSVAGKKCDATPFSNVKVDKIVEE--------LHRLGYGNWGSEVMVNG 231
Query: 262 ---HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
H F ++IF +YQ+ ++M+ED++K+R+ G LT +
Sbjct: 232 QTGHQF------------------EAVIFIGPAYYQRLVYMAEDRIKYRSLGPTHILTHQ 273
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
PV+DRKR GG++ GEM+ DCL+AHGA N+ ERL C V + G
Sbjct: 274 PVSDRKRHGGVKIGEMERDCLLAHGACANVQERLFLLSDPYIMYICSKCHMVAAKDTKGY 333
Query: 369 YCRICNSADDIIKANVPYGAKLLSQEL 395
+CR C S I++ ++PY KLL QEL
Sbjct: 334 HCRFCRSNYHIVQVHMPYACKLLYQEL 360
>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1255
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 775 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFSQRMETMANILYYPQKP 831
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 832 LATTRSMEFLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADT 891
Query: 102 KD---IQVKSRPSD----DMLNFGK---------------IQSKSGDIVIGKYAEIGADH 139
+ +QV R D L K ++ DI+IGK A + AD
Sbjct: 892 EKMVGLQVVERFEKPMRLDTLGMRKGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADA 951
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+S+ +D F V +R + +GD
Sbjct: 952 EELGQRTKAHTKIDVSTPLRSTENGIVDQVLISTGNDDLKFVKVRMRTT----KVPQIGD 1007
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1008 KFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1067
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G +F + L
Sbjct: 1068 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMFNGHTGRKLV-------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1165
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1166 CMIAHGASSFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1225
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1226 PYAAKLLFQELA-SMNIAARMFTDRSGVSV 1254
>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
10762]
Length = 1254
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 156/515 (30%), Positives = 223/515 (43%), Gaps = 137/515 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN IR+DT+ L+YPQ
Sbjct: 774 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVTLTNFGIRMDTMANVLYYPQ 828
Query: 60 RPLFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL I+ C EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 829 KPLATTRSMEFLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYM 888
Query: 100 DNKD------------------IQVKSRPSDDMLNFGKIQSKS----GDIVIGKYAEIGA 137
D + +++K D + + G I S DI+IGK A I
Sbjct: 889 DQEKRVGMSVVEQFEKPVRSDTLKMKGGTYDKLDDDGIISPGSRVSGEDIIIGKTAPIAP 948
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VLL++N +G F V R + +
Sbjct: 949 DAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLKFVKVRTRTT----KVPQI 1004
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1005 GDKFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGA 1064
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T + +S LL G + G ++ + L
Sbjct: 1065 LTGQEGDATPFTDVT--------LTSISTLLEEHGFQRRGFEVMYNGHTGKKL------- 1109
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1110 -------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1162
Query: 336 CDCLIAHGASGNLHERLK----------CK------NVANVIQRVVGGPYCRICNSADDI 379
DC+IAHGAS L ERL C+ +A + ++ + CR C + + I
Sbjct: 1163 RDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIAKLKEKTI---ECRQCRNKNRI 1219
Query: 380 IKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+ +PY AKLL QEL+ +M + + T SGVS+
Sbjct: 1220 AQVIIPYAAKLLFQELA-AMNVATRMFTDRSGVSI 1253
>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 212/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 711 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 768 LVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
VK RP DD L + D++IGK I
Sbjct: 828 EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEE 887
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 888 AQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 943
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 944 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1004 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1044
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1045 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ +P
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVYIP 1159
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1160 YACKLLFQEL-MAMAIAPRMLTK 1181
>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1193
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 212/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 711 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
VK RP DD L + D++IGK I
Sbjct: 828 EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEE 887
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 888 AQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 943
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 944 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1004 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1044
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1045 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ +P
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVYIP 1159
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1160 YACKLLFQEL-MAMAIAPRMLTK 1181
>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera]
gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
Length = 1193
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 214/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 710 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 766
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 767 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 826
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 827 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 886
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 887 SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 942
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 943 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1002
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1003 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFETMYNGHTGRRLT---------- 1044
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1045 ----AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1100
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1101 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1158
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1159 YACKLLFQEL-MAMAIAPRMLTK 1180
>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1087
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 611 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 667
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 668 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYSQEDSVIMNQSSIDRGFFRSLFFRSYRDE 727
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
VK RP DD L + D++IGK I
Sbjct: 728 EKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 787
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 788 AQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 843
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 844 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 903
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 904 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 944
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 945 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1001
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1002 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKSSFECRGCKNKTDIVQVHIP 1059
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1060 YACKLLFQEL-MAMAIAPRMLTK 1081
>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
polypeptide
gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 708 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 764
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 765 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 824
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
VK RP DD L + D++IGK I
Sbjct: 825 EKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 884
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 885 AQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 940
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 941 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1000
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1001 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1041
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1042 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1156
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1157 YACKLLFQEL-MAMAIAPRMLTK 1178
>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 712 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 768
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 769 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 828
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
VK RP DD L + D++IGK I
Sbjct: 829 EKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 888
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 889 AQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 944
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 945 SSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1004
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1005 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1045
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1046 ---PAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1102
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1103 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1160
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1161 YACKLLFQEL-MAMAIAPRMLTK 1182
>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
Length = 733
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 148/491 (30%), Positives = 210/491 (42%), Gaps = 102/491 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 250 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 306
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 307 LVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 366
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 367 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDE 426
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS L+H+E G+V +VLL++N DG F V +R V +GD
Sbjct: 427 ATQGGPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGD 482
Query: 185 KFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSF 241
KFSS HGQKG +G E P + +G C ++ P A + I + +
Sbjct: 483 KFSSRHGQKGTVGMTYTQEDMPWTI------EGICPDII--VNPHAIPSRMTIGQLIECI 534
Query: 242 VSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWIT 291
+ ++ +G F + L +C F + + + IF T
Sbjct: 535 MGKVAAXMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAXIFLGPT 594
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ER
Sbjct: 595 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKER 654
Query: 352 L-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSF 397
L +C VA I + + CR C + DI++ ++PY KLL QEL
Sbjct: 655 LFDQSDAYRVHVCERCGLVA--IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-M 711
Query: 398 SMGITLKFDTQ 408
SM I + T+
Sbjct: 712 SMAIAPRMMTK 722
>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
24927]
Length = 1258
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 223/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN N R+DT+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIFLTNFNERMDTMANILYYPQKP 834
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +D
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDS 894
Query: 101 -----------------NKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
N +++K + DD L ++ DI+IGK A I AD
Sbjct: 895 EKRIGMTTIEEFEKPMRNNTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADT 954
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++N +G F V +R + +GD
Sbjct: 955 EELGQRTKNHTKRDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTT----KVPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS+LL G ++ G ++ +
Sbjct: 1071 GFEGDATPF--------TEVTVENVSRLLREHGYQSRGFEVMYNGH----------TGKK 1112
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+C V F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1113 LVCQV----FLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL----------------KCKNVANVIQRVVGGPYCRICNSADDIIK 381
C+I+HGAS L ERL +AN+ + + CR C + I +
Sbjct: 1169 CMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIANLKKNLF---ECRPCRNKTKISQ 1225
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL+ +M I + ++ SGV++
Sbjct: 1226 IHLPYAAKLLFQELT-AMNIAARMYSKRSGVTI 1257
>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
Length = 1232
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 223/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 751 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 807
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 808 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDL 867
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L ++ DI+IGK I D
Sbjct: 868 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDT 927
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 928 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KIPQIGD 983
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 984 KFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1043
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1044 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1087
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1088 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1141
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A VI + + CR C + +I + ++
Sbjct: 1142 CMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMTVIANLKKNQFECRSCKNKTNIYQIHI 1201
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ S S+
Sbjct: 1202 PYAAKLLFQEL-MAMNISPRMYTERSQNSI 1230
>gi|223942873|gb|ACN25520.1| unknown [Zea mays]
Length = 141
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 100/138 (72%), Gaps = 20/138 (14%)
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM+ DCL+AHG++ NLHE
Sbjct: 4 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHE 63
Query: 351 RL-------------KCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLL 391
RL C+ VANV+ R V GPYC C S+++I++ NVPYGAKLL
Sbjct: 64 RLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLL 123
Query: 392 SQELSFSMGITLKFDTQL 409
QEL FSMGI LKF+TQ+
Sbjct: 124 YQEL-FSMGICLKFETQV 140
>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1213
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 730 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 786
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 787 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 846
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
VK RP DD L + D++IGK +
Sbjct: 847 EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEE 906
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 907 QQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 962
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 963 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1022
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1023 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFETMYNGHTGRRL----------- 1063
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1064 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1120
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ +P
Sbjct: 1121 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVYIP 1178
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1179 YACKLLFQEL-MAMAIAPRMLTK 1200
>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
Length = 1262
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 155/515 (30%), Positives = 223/515 (43%), Gaps = 137/515 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAT 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q VSQLL G + G ++ + +
Sbjct: 1072 ITGQEGDATPFT----DVTVDQ----VSQLLENAGYQKRGFEIMYNGHTGKKM------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERLKCKN----------------VANVIQRVVGGPYCRICNSADDI 379
DC+IAHGA+ L ERL + +AN+ + + CR C++ I
Sbjct: 1170 RDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIANLKKNLY---ECRPCHNKTRI 1226
Query: 380 IKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+ ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1227 SQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
Length = 1276
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 223/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN N R+DT+ L+YPQ+P
Sbjct: 796 SMLLGICASIIPFPDHNQSPRN--CYQSAM-GKQAMGFFLTNYNRRMDTMANILYYPQKP 852
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ++++ G+FRS +++ D+
Sbjct: 853 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSTIDRGLFRSLFFRSYTDS 912
Query: 102 KD------------------IQVKSRPSDDMLNFGKI----QSKSGDIVIGKYAEIGADH 139
+ +++K D + + G + + DI+IGK A I AD+
Sbjct: 913 EKRVGINMVEKFEKPFRADTLRLKQGTYDKLEDDGIVAPGTRVSGEDIIIGKTAPIPADN 972
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N DG + V +R + +GD
Sbjct: 973 QELGQRTVQHTKRDASTPLRSTESGIVDQVIVTTNQDGLKYVKVRVRTT----KIPQIGD 1028
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1029 KFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVATLK 1088
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF TE VS LL G ++ G ++ + L
Sbjct: 1089 GMEGDATPF--------TEVTVDSVSNLLREHGYQSRGFEVLYHGHTGRKL--------- 1131
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G +T +PV R R GG+ FGEM+ D
Sbjct: 1132 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVNIMTRQPVEGRARDGGLRFGEMERD 1186
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGA+ L ERL C + + CR C + I + ++
Sbjct: 1187 CMIAHGAASFLKERLFEVSDAFRAHICGICGLMTPIADLTRKTFECRPCRNKTKIAQVHI 1246
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1247 PYAAKLLFQELA-SMNIATRMFTERSGVSI 1275
>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 214/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 747 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 803
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 804 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 863
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
VK RP+ DD L + D++IGK + I
Sbjct: 864 EKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDD 923
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 924 AQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 979
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 980 SSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1039
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1040 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFETMYNGHTGRKL----------- 1080
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1081 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1137
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL KC +A I + + CR C + DI++ ++P
Sbjct: 1138 IAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1195
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T
Sbjct: 1196 YACKLLFQEL-MAMAIAPRMLTH 1217
>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
Length = 1234
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 151/506 (29%), Positives = 225/506 (44%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 753 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 809
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 810 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDI 869
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K ++ +P+ +D L ++ DI+IGK I AD
Sbjct: 870 EKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 930 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTT----KVPQIGD 985
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 986 KFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1045
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF V TEQ +S LL G ++ G ++ + L
Sbjct: 1046 GFEGDASPFT----DVTTEQ----ISTLLRDHGYQSRGFEVMYNGHTGKKLM-------- 1089
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1090 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1143
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1144 CMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1203
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I+ + T+ S
Sbjct: 1204 PYAAKLLFQEL-MAMNISPRLYTERS 1228
>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1255
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 156/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 775 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFSQRMETMANILYYPQKP 831
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 832 LATTRSMEFLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADT 891
Query: 102 KD---IQVKSRPSD----DMLNFGK---------------IQSKSGDIVIGKYAEIGADH 139
+ +QV R D L K ++ DI+IGK A + AD
Sbjct: 892 EKMVGLQVVERFEKPMRIDTLGMRKGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADA 951
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+S+ +D F V +R + +GD
Sbjct: 952 EELGQRTKAHTKIDVSTPLRSTENGIVDQVLVSTGNDDLKFVKVRMRTT----KIPQIGD 1007
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1008 KFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1067
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G +F + +
Sbjct: 1068 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMFNGHTGRKMV-------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1165
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1166 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1225
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1226 PYAAKLLFQELA-SMNIAARMFTDRSGVSV 1254
>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
Length = 1222
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 219/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 744 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNFNVRMDTMANILYYPQKP 800
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 801 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 860
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 861 EKKYGMSITETFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDE 920
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 921 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 976
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 977 KFASRHGQKGTIGITYRREDMPFTADGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1036
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G + G ++ + L
Sbjct: 1037 GNEGDASPFTDIT--------VEGISKLLREHGYHSRGFEVMYNGHTGKKLM-------- 1080
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1081 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134
Query: 338 CLIAHGASGNLHERLK----------CKN--VANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL C N + +VI ++ + C+ CN+ DI + ++
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIHI 1194
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1195 PYAAKLLFQEL-MAMNITPRLFTDRS 1219
>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
Length = 1234
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 151/506 (29%), Positives = 225/506 (44%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 753 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 809
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 810 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDI 869
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K ++ +P+ +D L ++ DI+IGK I AD
Sbjct: 870 EKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 930 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 985
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 986 KFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1045
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF V TEQ +S LL G ++ G ++ + L
Sbjct: 1046 GFEGDASPFT----DVTTEQ----ISTLLRDHGYQSRGFEVMYNGHTGKKLM-------- 1089
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1090 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1143
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1144 CMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1203
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I+ + T+ S
Sbjct: 1204 PYAAKLLFQEL-MAMNISPRLYTERS 1228
>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
Length = 1224
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 221/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 978
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLK----------CKN--VANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL C N + +VI ++ + C+ C++ DI + ++
Sbjct: 1137 CMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T+ S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTERS 1221
>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
Length = 1220
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 742 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 798
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 799 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 858
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 859 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDE 918
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G++ +VL+++N DG F V +R + +GD
Sbjct: 919 EELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQDGLKFVKVRVRTT----KVPQIGD 974
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 975 KFASRHGQKGTIGITYSREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1034
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G + G ++ + L
Sbjct: 1035 GNEGDASPFTDIT--------VEGISKLLREHGYHSRGFEVMYNGHTGKKLM-------- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1079 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1132
Query: 338 CLIAHGASGNLHERLK----------CKN--VANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL C N + +VI ++ + C+ CN+ DI + +
Sbjct: 1133 CMIAHGAAAFLKERLMEASDSFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIRI 1192
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1193 PYAAKLLFQEL-MAMNITPRLYTDRS 1217
>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1203
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 210/502 (41%), Gaps = 126/502 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 722 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 778
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 779 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 838
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
VK RP DD + D++IGK I
Sbjct: 839 EKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDD 898
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F + +R V +GDKF
Sbjct: 899 AQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRS----VRIPQIGDKF 954
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 955 SSRHGQKGTIGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGK 1014
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1015 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGHTGRIL----------- 1055
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1056 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1112
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPY 386
IAHGA+ L ERL +C +A + + CR C + DI++ +PY
Sbjct: 1113 IAHGAAHFLKERLFDQSDAYRIHVCQQCGLIAIANLKKISFE-CRSCKNKTDIVQVYIPY 1171
Query: 387 GAKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 1172 ACKLLIQEL-MSMAIAPRMLTK 1192
>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
Length = 1222
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 148/506 (29%), Positives = 219/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ +IP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 744 SMILGVAASVIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 800
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 801 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 860
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 861 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDE 920
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 921 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 976
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 977 KFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1036
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1037 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1080
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1081 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A +VI ++ + C+ C++ DI + N+
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQINI 1194
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1195 PYAAKLLFQEL-MAMNITPRLYTDRS 1219
>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
lozoyensis 74030]
Length = 1263
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 223/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 783 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDVRMDTMANILYYPQKP 839
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 840 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 899
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 900 EKRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPMAPDA 959
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 960 EELGQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT----KIPQIGD 1015
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G +E P A L+E L K
Sbjct: 1016 KFASRHGQKGTIGITYRMEDMPFTSQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLR 1075
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G ++ G ++ + +
Sbjct: 1076 GLEGDATPF--------TEVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMM-------- 1119
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1120 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1173
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+I+HGA+ L ERL C + + + CR C + I + ++
Sbjct: 1174 CMISHGAAAFLKERLFEVSDAFRVHLCDICGLMTPIAKLQSQNFECRSCKNKTRISQIHI 1233
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SG+S+
Sbjct: 1234 PYAAKLLFQELA-SMNIAARMFTERSGISV 1262
>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
Length = 1205
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 156/504 (30%), Positives = 216/504 (42%), Gaps = 130/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 727 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 783
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G+FRS SY+ E
Sbjct: 784 LVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDE 843
Query: 99 VDNKDIQVKS---RPSDDML------NFGKIQSK---------SGD-IVIGKYAEIG--- 136
VK RP + N+ K++ SGD ++IGK I
Sbjct: 844 EKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDE 903
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F + +R V +GDKF
Sbjct: 904 AQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRS----VRIPQIGDKF 959
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 960 SSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGK 1019
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I+ L NC G + G ++ + L
Sbjct: 1020 EGDATPFTDVTVDSISRT-------LHNC-GYQMRGFERMYNGHTGRVL----------- 1060
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1061 ---PAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1117
Query: 340 IAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANV 384
IAHGA+ L ERL C+ +AN+ + CR C + D ++ +
Sbjct: 1118 IAHGAAHFLKERLFDQSDAYRVHVCQQCGLMAIANLKKMSFE---CRSCRNKTDNVQVYI 1174
Query: 385 PYGAKLLSQELSFSMGITLKFDTQ 408
PY KLL QEL SM I + T+
Sbjct: 1175 PYACKLLIQEL-MSMAIAPRMLTK 1197
>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2508]
gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2509]
Length = 1287
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 807 SMLLGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 863
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 864 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDC 923
Query: 101 -------------NKDIQVKSRPS----DDMLNFG----KIQSKSGDIVIGKYAEIGADH 139
D RP D + N G I+ DI+IGK + I D+
Sbjct: 924 EKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDN 983
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V ++N DG + V +R + +GD
Sbjct: 984 QELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT----KIPQIGD 1039
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1040 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGALK 1099
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1100 GMEGDATPFTDVT--------VDSVSNLLREHGYQSRGFEIMYHGHTGKKL--------- 1142
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1143 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1197
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1198 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFE---CRPCKNKTKIAQ 1254
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG+S+
Sbjct: 1255 VHMPYAAKLLFQEL-MSMNIASRLFTSRSGISV 1286
>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
CIRAD86]
Length = 1248
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 224/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 768 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVTLTNYNVRMDTMANVLYYPQKP 824
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS ++A +D
Sbjct: 825 LATTRSMEFLRFRDLPAGQNAIVAISCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQ 884
Query: 102 KD------------------IQVKSRPSDDMLNFGKIQSKS----GDIVIGKYA------ 133
+ +++K D + G I S D++IGK A
Sbjct: 885 EKRVGMSVVEQFEKPVRADTMRMKQGTYDKLDEDGIISPGSRVSGDDVIIGKTAPMPPDA 944
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N +G F V +R V V +GD
Sbjct: 945 EELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLRF--VKVRTRVTKVPQ--IGD 1000
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1001 KFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQ 1060
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T + +SQ+L G + G ++ + L
Sbjct: 1061 GQEGDATPFTDVT--------VTSISQILADHGFQQRGFEVMYNGHTGKKL--------- 1103
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1104 -----NAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1158
Query: 338 CLIAHGASGNLHERLK----------CK--NVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL C+ + I + + CR C + I + +
Sbjct: 1159 CMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIASIKKQQFECRPCRNKTKIAQVII 1218
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M + + T SG+S+
Sbjct: 1219 PYAAKLLFQELA-AMNVATRMFTDRSGISI 1247
>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
VdLs.17]
Length = 1260
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 150/513 (29%), Positives = 221/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 780 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 836
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 837 LATTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 896
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ N +++K + DD + ++ DI+IGK + I D+
Sbjct: 897 EKRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDN 956
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G++ V+L++N DG + V +R + +GD
Sbjct: 957 QELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTT----KIPQIGD 1012
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1013 KFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1072
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VSQLL G ++ G ++ + L
Sbjct: 1073 GMEGDATPFTDVT--------VDSVSQLLRDQGYQSRGFEVMYNGHTGKKL--------- 1115
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1116 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1170
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1171 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1227
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SGVS+
Sbjct: 1228 IHIPYAAKLLFQELQ-SMNIAARMFTDRSGVSI 1259
>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
Length = 1287
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 807 SMLLGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 863
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 864 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDC 923
Query: 101 -------------NKDIQVKSRPS----DDMLNFG----KIQSKSGDIVIGKYAEIGADH 139
D RP D + N G I+ DI+IGK + I D+
Sbjct: 924 EKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDN 983
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V ++N DG + V +R + +GD
Sbjct: 984 QELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT----KIPQIGD 1039
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1040 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGALK 1099
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1100 GMEGDATPFTDVT--------VDSVSNLLREHGYQSRGFEIMYHGHTGKKL--------- 1142
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1143 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1197
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1198 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFE---CRPCKNKTKIAQ 1254
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG+S+
Sbjct: 1255 VHMPYAAKLLFQEL-MSMNIASRLFTSRSGISV 1286
>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
VaMs.102]
gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
VaMs.102]
Length = 1260
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 150/513 (29%), Positives = 221/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 780 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 836
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 837 LATTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 896
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ N +++K + DD + ++ DI+IGK + I D+
Sbjct: 897 EKRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDN 956
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G++ V+L++N DG + V +R + +GD
Sbjct: 957 QELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTT----KIPQIGD 1012
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1013 KFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1072
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VSQLL G ++ G ++ + L
Sbjct: 1073 GMEGDATPFTDVT--------VDSVSQLLRDQGYQSRGFEVMYNGHTGKKL--------- 1115
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1116 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1170
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1171 CMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1227
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SGVS+
Sbjct: 1228 IHIPYAAKLLFQELQ-SMNIAARMFTDRSGVSI 1259
>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
higginsianum]
Length = 1258
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 151/513 (29%), Positives = 223/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 778 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS--------- 92
L I+ C EDS++MNQ+S++ G+FRS
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 894
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ + +++K + DD + ++ DI+IGK + I D+
Sbjct: 895 EKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDN 954
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N DG + V +R + +GD
Sbjct: 955 AELGQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1011 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VSQLL G ++ G ++ + L
Sbjct: 1071 GMEGDATPFTDVT--------VDSVSQLLRDQGYQSRGFEIMYNGHTGRKL--------- 1113
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1114 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1169 CMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1225
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SGVS+
Sbjct: 1226 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGVSI 1257
>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 153/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 737 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 793
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 794 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 853
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
VK RP+ DD L + D++IGK + I
Sbjct: 854 EKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDD 913
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 914 AQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 969
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 970 SSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGR 1029
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ + G ++ + L
Sbjct: 1030 EGDATPFTDVT--------VDNISKALHRCNYQMRGFETMYNGHTGRKL----------- 1070
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1071 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1127
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL KC +A I + + CR C + DI++ ++P
Sbjct: 1128 IAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1185
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T
Sbjct: 1186 YACKLLFQEL-MAMAIAPRMLTH 1207
>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1259
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 151/513 (29%), Positives = 223/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 779 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 835
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS--------- 92
L I+ C EDS++MNQ+S++ G+FRS
Sbjct: 836 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 895
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ + +++K + DD + ++ DI+IGK + I D+
Sbjct: 896 EKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDN 955
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V++++N DG + V +R + +GD
Sbjct: 956 QELGQKTTQHVKRDASTPLRSTENGIVDSVIITTNQDGLRYVKVRVRTT----KIPQIGD 1011
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1012 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1071
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VSQLL G ++ G +++ + L
Sbjct: 1072 GMEGDATPFTDVT--------VDSVSQLLRDQGYQSRGFEIMYQGHTGRKL--------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1115 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1169
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1170 CMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1226
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SGVS+
Sbjct: 1227 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGVSI 1258
>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1259
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 151/513 (29%), Positives = 223/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 779 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 835
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS--------- 92
L I+ C EDS++MNQ+S++ G+FRS
Sbjct: 836 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 895
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ + +++K + DD + ++ DI+IGK + I D+
Sbjct: 896 EKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDN 955
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N DG + V +R + +GD
Sbjct: 956 AELGQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTT----KIPQIGD 1011
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1012 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1071
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VSQLL G ++ G ++ + L
Sbjct: 1072 GMEGDATPFTDVT--------VDSVSQLLRDQGYQSRGFEIMYNGHTGRKL--------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1115 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1169
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1170 CMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1226
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SGVS+
Sbjct: 1227 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGVSI 1258
>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
Length = 1255
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 217/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R+DT+ L+YPQ+P
Sbjct: 775 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYDQRMDTMANILYYPQKP 831
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
+ I+ C EDS++MNQ+S++ G+FRS Y++ D
Sbjct: 832 MATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 891
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ D++IGK A I D
Sbjct: 892 EKRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDS 951
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N +G F V +R + +GD
Sbjct: 952 EELGQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT----KIPQIGD 1007
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1008 KFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1067
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS++L G ++ G ++ + L
Sbjct: 1068 GFEGDATPF--------TEVTVDSVSKILRAHGYQSRGFEVMYNAHTGLKLV-------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1165
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V CR C + I + ++
Sbjct: 1166 CMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKTRISQVHI 1225
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SG+S+
Sbjct: 1226 PYAAKLLFQELA-SMNIAARMYTTRSGLSV 1254
>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
Length = 1266
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 221/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN R+DT+ L+YPQ+P
Sbjct: 786 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYPRRMDTMANVLYYPQKP 842
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS ++A D+
Sbjct: 843 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYTDS 902
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK + I DH
Sbjct: 903 EKRVGINFVETFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDH 962
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G++ +V++++N D + V +R + +GD
Sbjct: 963 QEMGQRTQAHVKRDASTPLRSTESGIIDQVVVTTNQDNLRYVKVRVRTT----KIPQIGD 1018
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1019 KFASRHGQKGTIGVTYRSEDMPFTTEGILPDIIINPHAIPSRMTIAHLIECLLSKVATLK 1078
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1079 GMEGDATPFTDVT--------VDSVSGLLREHGYQSRGFEIMYHGHTGRKL--------- 1121
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1122 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1176
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1177 CMIAHGAAAFLKERLFEVSDAYRVHICEICGLMTPIANLTKQSF---ECRPCKNKTRIAQ 1233
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1234 VQIPYAAKLLFQELA-AMNIAARMFTDRSGVSI 1265
>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
Length = 1227
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 148/506 (29%), Positives = 220/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 749 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 805
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 806 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 865
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ D++IGK I D
Sbjct: 866 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 925
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 926 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 981
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 982 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1041
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1042 GNEGDASPFTDIT--------VEGISRLLREHGYQSRGFEVMYNGHTGKKLM-------- 1085
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1086 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1139
Query: 338 CLIAHGASGNLHERLK----------CKN--VANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL C N + +VI ++ + C+ C++ DI + ++
Sbjct: 1140 CMIAHGAASFLKERLMEASDAFRVHVCGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHI 1199
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1200 PYAAKLLFQEL-MAMNITPRLYTDRS 1224
>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
Length = 1278
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 223/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 798 AMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 854
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+VMNQ+S++ G+FRS +++ D
Sbjct: 855 LATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLFFRSYTDC 914
Query: 102 KD------IQVKSRPSD-DMLNFGK---------------IQSKSGDIVIGKYAEIGADH 139
+ +++ +P+ D L I+ DI+IGK + I D+
Sbjct: 915 EKRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIAPGIRVSGEDIIIGKTSPINPDN 974
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V+L++N DG + V +R + +GD
Sbjct: 975 AELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTT----KIPQIGD 1030
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G +E P A L+E L K A
Sbjct: 1031 KFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLSKVATLK 1090
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF T VS LL G ++ G ++ + L
Sbjct: 1091 GLEGDATPFTDVT--------VDSVSDLLREQGYQSRGFEILYHGHTGRKL--------- 1133
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1134 -----RAQCFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1188
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1189 CMIAHGAASFLKERLFEVSDAYRVHICEICGLMTPIANLTKQSF---ECRPCKNKTKIAQ 1245
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SMGI + T SG+S+
Sbjct: 1246 VHMPYAAKLLFQEL-MSMGIASRMFTSRSGISV 1277
>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 1258
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 154/514 (29%), Positives = 221/514 (42%), Gaps = 131/514 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT++ L+YPQ+P
Sbjct: 773 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVCLTNYELRMDTMVNVLYYPQKP 829
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y++ D
Sbjct: 830 LATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 889
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A I D
Sbjct: 890 EKKVGMAVVEQFEKPMRSDTMRLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDA 949
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V R + +GD
Sbjct: 950 EELGQRTKMHIKRDVSTPLRSTENGIVDQVLLTTNSDGLKFVKVRTRTT----KVPQIGD 1005
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 1006 KFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLSKVGALR 1065
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ VS LL G ++ G ++ + L
Sbjct: 1066 GQEGDATPFTDVT---VTQ-----VSSLLREHGYQSRGFEIMYNGHTGKKLT-------- 1109
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1110 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1163
Query: 338 CLIAHGASGNLHERL-KCKNVANV-------IQRVVGGPY---------CRICNSADDII 380
C+I+HGAS L ERL + + V + + P CR C + I
Sbjct: 1164 CMISHGASAFLKERLFEVSDAYRVHICEICGLMTPIACPRSNLKRNQFECRPCKNKTKIA 1223
Query: 381 KANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+ +PY AKLL QEL+ SM I + T+ SG S+
Sbjct: 1224 QIYIPYAAKLLFQELA-SMNIASRMYTKRSGYSV 1256
>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
Length = 1224
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 146/506 (28%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQ+ QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQA-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V ++L+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQDGLKFVKVRVRTT----KIPQIGD 978
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------SQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A +V+ ++ + CR C++ DI + ++
Sbjct: 1137 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLNHNQFECRGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
Length = 1254
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 774 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 830
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS+VMNQ+S++ G+FRS Y+ D+
Sbjct: 831 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDS 890
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYAEIGADH 139
+ ++ +P D + K ++ DI+IGK A + D
Sbjct: 891 EKMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDA 950
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 951 EELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1006
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1007 KFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSKVSALR 1066
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1067 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1110
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1111 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1164
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1165 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1224
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1225 PYAAKLLFQELA-SMNIAARMFTNRSGVSV 1253
>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
RIB40]
Length = 1221
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 741 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 797
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS+VMNQ+S++ G+FRS Y+ D+
Sbjct: 798 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDS 857
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYAEIGADH 139
+ ++ +P D + K ++ DI+IGK A + D
Sbjct: 858 EKMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDA 917
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 918 EELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 973
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 974 KFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSKVSALR 1033
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1034 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1077
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1078 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1131
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1132 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1191
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1192 PYAAKLLFQELA-SMNIAARMFTNRSGVSV 1220
>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1198
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 152/501 (30%), Positives = 207/501 (41%), Gaps = 128/501 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 717 SLVLGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 773
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 774 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 833
Query: 99 VDNKDIQVKS-------------------RPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK + DD + D++IGK D
Sbjct: 834 EKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDE 893
Query: 139 ----------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
HS L+H+E G+V +VLL++N DG F V IR V +GDKFSS
Sbjct: 894 NQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRS----VRIPQIGDKFSS 949
Query: 189 MHGQKGVLGFL--------------------------EQTPAQLLEAALGKGACD-GLMS 221
HGQKG +G T QL+E +GK A G
Sbjct: 950 RHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1009
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1010 DATPFTDVTVDNI--------SKALHKCGYQMRGFETMYNGHTGRPL------------- 1048
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 341
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IA
Sbjct: 1049 -TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1107
Query: 342 HGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPY 386
HGA+ L ERL +C +AN+ + CR C + DI++ +PY
Sbjct: 1108 HGAAHFLKERLFDQSDAYRVHVCERCGLMGIANLKKHSYE---CRSCKNKTDIVQIYIPY 1164
Query: 387 GAKLLSQELSFSMGITLKFDT 407
KLL QEL SM I + T
Sbjct: 1165 ACKLLIQEL-MSMAIAPRLLT 1184
>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
IPO323]
gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
Length = 1231
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 229/513 (44%), Gaps = 138/513 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQA-IGFPTTNPNIRVDTLLQQLFYP 58
+ +LG+ IIP H QS +++ QA +G TN N+R+DT+ L+YP
Sbjct: 756 AMILGICASIIPFPDH-----------NQSPRNTYQATMGVTLTNYNVRMDTMANVLYYP 804
Query: 59 QRPLFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAE 98
Q+PL I+ C EDS++MNQ+S++ G+FRS Y+A
Sbjct: 805 QKPLATTRSMEFLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAY 864
Query: 99 VDNKD------IQVKSRP--SDDML----NFGKIQSK---------SG-DIVIGKYA--- 133
+D + ++ +P SD M + K+ SG DI+IGK A
Sbjct: 865 MDQEKRVGMSVVESFEKPTRSDTMRMQHGTYDKLDEDGIISPGARVSGTDILIGKTAPMP 924
Query: 134 ----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S L+ TE G+V +VLL++N +G F V +R V V
Sbjct: 925 PDAEELGQRTKLHVKRDVSTPLRSTENGVVDQVLLTTNTEGLRF--VKVRTRVTKVPQ-- 980
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P A L+E L K G
Sbjct: 981 IGDKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSKVG 1040
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G ATPF TE + +S++L G + G ++ + L
Sbjct: 1041 ALQGQEGDATPF--------TEVTVTSISEILKSNGFQQRGFEVMYNGHTGKKL------ 1086
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1087 --------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEM 1138
Query: 335 KCDCLIAHGASGNLHERLK----------CK--NVANVIQRVVGGPY-CRICNSADDIIK 381
+ DC+IAHGAS L ERL C+ + I + + CR C + I +
Sbjct: 1139 ERDCMIAHGASAFLKERLLDVSDAFRVHICELCGLMTPIASIKKQQFECRPCKNKTKIAQ 1198
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+PY AKLL QEL+ +M + + T SGVS+
Sbjct: 1199 IIIPYAAKLLFQELA-AMNVATRMFTTRSGVSI 1230
>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1241
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 220/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 763 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 819
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 820 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 879
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P+ DD L ++ DI+IGK I AD
Sbjct: 880 EKRVGMTVVEQFEKPNRSNTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIQADS 939
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 940 EELGQRTVYHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRMRTT----KVPQIGD 995
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 996 KFASRHGQKGTIGITYRREDMPFTREGIVPDLIINPHAIPSRMTVAHLIECLLSKVSALS 1055
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T I S+LL G ++ G ++ + L
Sbjct: 1056 GLEGDASPFTDVTVDAI--------SKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1099
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1100 ------AQIFFGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1153
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ + ERL + A +VI ++ + CR C + DI + ++
Sbjct: 1154 CMIAHGAAAFMKERLMEASDAFRVHVCGVCGLMSVIAKLKHNQFECRGCKNKIDIYQIHI 1213
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I + T S
Sbjct: 1214 PYAAKLLFQEL-MAMNIAPRLYTDRS 1238
>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
Length = 1224
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 216/506 (42%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLISPGVRVSGEDIIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT----KVPQIGD 978
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + +
Sbjct: 1137 CMIAHGAAAFLKERLMEASDAFRVHVCGICGLMTVIAKLNHNQFECKGCDNKIDIYQIRI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1743
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 1263 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 1319
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 1320 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 1379
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 1380 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEA 1439
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 1440 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1495
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1496 KFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1555
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ Y L
Sbjct: 1556 GFEGDATPFTDVTVDSI--------SSLLREHGYQSRGFEVMYNGYTGRKLV-------- 1599
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1600 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1653
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR C + + I + ++
Sbjct: 1654 CMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHI 1713
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1714 PYAAKLLFQEL-MSMNIAARMFTKRSGVSL 1742
>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
Length = 1255
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 217/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R+DT+ L+YPQ+P
Sbjct: 775 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYDQRMDTMANILYYPQKP 831
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
+ I+ C EDS++MNQ+S++ G+FRS Y++ D
Sbjct: 832 MATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 891
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ D++IGK A
Sbjct: 892 EKRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDS 951
Query: 134 ---------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
I D S L+ TE G+V +VLL++N +G F V +R + +GD
Sbjct: 952 EELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT----KIPQIGD 1007
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1008 KFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1067
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS++L G ++ G ++ + L
Sbjct: 1068 GFEGDATPF--------TEVTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLV-------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1165
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V CR C + I + ++
Sbjct: 1166 CMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKTRISQVHI 1225
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SG+S+
Sbjct: 1226 PYAAKLLFQELA-SMNIAARMYTTRSGLSV 1254
>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
Length = 1224
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ D++IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT----KVPQIGD 978
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + ++
Sbjct: 1137 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1256
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 776 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANLLYYPQKP 832
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 833 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 892
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 893 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 952
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 953 EELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1008
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1009 KFASRHGQKGTIGITYRQEDMPFTREGVAPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1068
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1069 GFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1112
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1113 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1166
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR+CN+ I + ++
Sbjct: 1167 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHI 1226
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1227 PYAAKLLFQELA-SMNIAARMFTNRSGVSV 1255
>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
Length = 1219
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 152/494 (30%), Positives = 216/494 (43%), Gaps = 124/494 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP Q + + YQS QA+G TN N+R+DTL L+YPQ+P
Sbjct: 755 SMILGVCASIIPFPDQNQSPRN--TYQS-AMGKQAMGVYATNFNLRMDTLCHILYYPQKP 811
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MNQ+S++ G+FRS +Y +E
Sbjct: 812 LVCTRSMEFLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYISE 871
Query: 99 ---VDNKDIQVKSRP-----------------SDDMLNFGKIQSKSGDIVIGKYA----- 133
V + ++ RP +D ++ G + DI+IG+ +
Sbjct: 872 EKYVGSTIVERFERPGTANILGLKRGDYTKLDADGLVEPGS-RVMGDDIIIGRTSTADEE 930
Query: 134 EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
++ D S L+ E G+V VL+S N G FA V +R V +GDKF+S HGQK
Sbjct: 931 DMRQDCSCCLRANENGVVDTVLVSVNAKGTKFAKVKVRS----VRVPQIGDKFASRHGQK 986
Query: 194 GVLGFLEQTP--------------------------AQLLEAALGK-GACDGLMSYATPF 226
G +G +T L+E +GK GAC G+ ATPF
Sbjct: 987 GTIGITYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLIGKVGACCGMEGDATPF 1046
Query: 227 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 286
+ T Q +L +C AR+ F C F M + S I
Sbjct: 1047 SKLT-------VQQIAERLFDCGYARHGNEAF-------HCGFTGQM--------ITSRI 1084
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F T+YQ+ HM EDK+ R+ G LT +P R R GG+ FGEM+ DC+I+HGA+
Sbjct: 1085 FVGPTYYQRLKHMVEDKIHARSRGPSTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAK 1144
Query: 347 NLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLL 391
L ERL C N +A++ + C C++ +I + +PY KLL
Sbjct: 1145 MLKERLFDQSDAYRIHVCDNCGLCCIADLNKSSFE---CTACDNKTNISQVAIPYACKLL 1201
Query: 392 SQELSFSMGITLKF 405
QEL SM I K
Sbjct: 1202 IQEL-MSMAIYPKL 1214
>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1274
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 152/513 (29%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 794 SMLLGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 850
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 851 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDC 910
Query: 101 -------------NKDIQVKSRPS----DDMLNFG----KIQSKSGDIVIGKYAEIGADH 139
D RP D + N G I+ DI+IGK + I D+
Sbjct: 911 EKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDN 970
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V ++N DG + V +R + +GD
Sbjct: 971 QELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT----KIPQIGD 1026
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K G+
Sbjct: 1027 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGSLK 1086
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1087 GMEGDATPFTDVT--------VDSVSNLLREHGYQSRGFEIMYHGHTGRKL--------- 1129
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1130 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1184
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1185 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSF---ECRPCKNKTKIAQ 1241
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG+++
Sbjct: 1242 VHMPYAAKLLFQEL-MSMNIASRMFTSRSGITV 1273
>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1224
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ D++IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT----KVPQIGD 978
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + ++
Sbjct: 1137 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 153/504 (30%), Positives = 210/504 (41%), Gaps = 130/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 722 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 778
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 779 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 838
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
VK RP DD + D++IGK I
Sbjct: 839 EKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDD 898
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F + +R V +GDKF
Sbjct: 899 AQGQPARYTQKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRS----VRIPQIGDKF 954
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 955 SSRHGQKGTIGMTYTQEDMPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGK 1014
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1015 EGDATPFTDVTVDNI--------SKALHRCGYQMRGFERMYNGHTGRVL----------- 1055
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1056 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1112
Query: 340 IAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANV 384
IAHGA+ L ERL C+ +AN+ + CR C + D ++ +
Sbjct: 1113 IAHGAAHFLKERLFDQSDAYRVHVCQQCGLIAIANLKKMSFE---CRSCRNKTDNVQVYI 1169
Query: 385 PYGAKLLSQELSFSMGITLKFDTQ 408
PY KLL QEL SM I + T+
Sbjct: 1170 PYACKLLIQEL-MSMAIAPRMLTK 1192
>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; AltName: Full=B150; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide
gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1224
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ D++IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT----KIPQIGD 978
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + ++
Sbjct: 1137 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
Length = 1282
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 157/513 (30%), Positives = 224/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 802 SMLLGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 858
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 859 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 918
Query: 101 NKDIQV-------KSRPSD---------DMLNFGKI-----QSKSGDIVIGKY------- 132
K + + K SD D L+ I + DI+IGK
Sbjct: 919 EKRVGINIIEKFEKPNRSDTLRLKHSTYDKLDMDGIVAPGVRVSGEDIIIGKTCPINPEN 978
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE+G D S L+ TE G+V V+L++N DG + V +R + +GD
Sbjct: 979 AELGQRSTQHVKRDASTPLRSTESGIVDSVILTTNQDGMRYVKVRVRTT----KIPQIGD 1034
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1035 KFASRHGQKGTIGVTFRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1094
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF TE VS LL G ++ G ++ + L
Sbjct: 1095 GMEGDATPF--------TEVTVDSVSALLREHGYQSRGFEIMYHGHTGRKL--------- 1137
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1138 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERD 1192
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1193 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSF---ECRPCKNKTKIAQ 1249
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG+S+
Sbjct: 1250 VHIPYAAKLLFQEL-MSMNIASRMFTSRSGISV 1281
>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ D++IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT----KIPQIGD 978
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + ++
Sbjct: 1137 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
Length = 1223
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 145/501 (28%), Positives = 215/501 (42%), Gaps = 127/501 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 745 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 801
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 802 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 861
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 862 EKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDE 921
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 922 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 977
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 978 KFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1037
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1038 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1081
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1082 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1135
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + ++
Sbjct: 1136 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1195
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY AKLL QEL +M IT +
Sbjct: 1196 PYAAKLLFQEL-MAMNITPRL 1215
>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
Length = 1236
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 148/506 (29%), Positives = 217/506 (42%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 758 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 814
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 815 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 874
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ DI+IGK I D
Sbjct: 875 EKKYGMSITETFEKPQRTNTLKMKHGSYDKLDDDGLISPGVRVSGEDIIIGKTTPISPDE 934
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G++ +VL+++N DG F V +R + +GD
Sbjct: 935 EELGQRTAYHSKRDASTPLRSTENGIIDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 990
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 991 KFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1050
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G + G ++ + L
Sbjct: 1051 GNEGDASPFTDIT--------VEGISKLLREHGYHSRGFEIMYNGHTGKKLM-------- 1094
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1095 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1148
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + +
Sbjct: 1149 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIKI 1208
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1209 PYAAKLLFQEL-MAMNITPRLYTDRS 1233
>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
[Meyerozyma guilliermondii]
Length = 1219
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 146/490 (29%), Positives = 212/490 (43%), Gaps = 126/490 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 755 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 811
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 812 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDL 871
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L I+ DI+IGK I D
Sbjct: 872 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDT 931
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 932 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 987
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 988 KFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1047
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+P T VS+LL G ++ G ++ + L
Sbjct: 1048 GLEGDASPLTDVTAEA--------VSKLLREHGYQSRGFEVMYHGHTGKKLM-------- 1091
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1092 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1145
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1146 CMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQVHI 1205
Query: 385 PYGAKLLSQE 394
PY AKLL QE
Sbjct: 1206 PYAAKLLFQE 1215
>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1256
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 776 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 832
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 833 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 892
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 893 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 952
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 953 EELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1008
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1009 KFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1068
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1069 GFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1112
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1113 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1166
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1167 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1226
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1227 PYAAKLLFQELA-SMNIAARMFTNRSGVSV 1255
>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1286
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 151/513 (29%), Positives = 223/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 806 SMLLGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSHRMDTMANILYYPQKP 862
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 863 LATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 922
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKI----QSKSGDIVIGKY------- 132
+ +++K D + G + + DI+IGK
Sbjct: 923 EKRVGINIVEMFEKPNRTETLRMKHSTYDKLDADGIVAPGTRVSGDDIIIGKTCPINPEN 982
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE+G+ D S L+ TE G+V V+L++N DG + V +R + +GD
Sbjct: 983 AELGSRTAQHVKRDVSTALRSTENGIVDSVILTTNQDGMRYVKVRVRTT----KIPQIGD 1038
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1039 KFASRHGQKGTIGVTYRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1098
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF TE VS LL G ++ G ++ + L
Sbjct: 1099 GMEGDATPF--------TEVTVDSVSALLREHGYQSRGFEIMYNGHTGRKL--------- 1141
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1142 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERD 1196
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1197 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFE---CRPCKNKTKIAQ 1253
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL +M I + T SG+S+
Sbjct: 1254 VHIPYAAKLLFQEL-MAMNIAARMFTTRSGISV 1285
>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
nidulans FGSC A4]
Length = 1252
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 149/511 (29%), Positives = 223/511 (43%), Gaps = 129/511 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 772 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 828
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 829 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDS 888
Query: 102 KD------IQVKSRP-----------------SDDMLNFGKIQSKSGDIVIGKYAEIGAD 138
+ ++ +P D ++N G ++ DI+IGK A + D
Sbjct: 889 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPG-VRVSGEDIIIGKTAPLAPD 947
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S L+ TE G+V +VL+++ D ++ S++ + M +G
Sbjct: 948 AEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPD----SLRSVKVRMRMTKVPQIG 1003
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G E P A L+E L K A
Sbjct: 1004 DKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSAL 1063
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1064 RGFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV------- 1108
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1109 -------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMER 1161
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKAN 383
DC+IAHGAS L ERL C + + + G CR+CN+ I + +
Sbjct: 1162 DCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVH 1221
Query: 384 VPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+PY AKLL QEL+ +M I+ + T SGVS+
Sbjct: 1222 IPYAAKLLFQELA-AMNISARMFTNRSGVSV 1251
>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
Length = 1028
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 149/511 (29%), Positives = 223/511 (43%), Gaps = 129/511 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 548 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 604
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 605 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDS 664
Query: 102 KD------IQVKSRP-----------------SDDMLNFGKIQSKSGDIVIGKYAEIGAD 138
+ ++ +P D ++N G ++ DI+IGK A + D
Sbjct: 665 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPG-VRVSGEDIIIGKTAPLAPD 723
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S L+ TE G+V +VL+++ D ++ S++ + M +G
Sbjct: 724 AEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPD----SLRSVKVRMRMTKVPQIG 779
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G E P A L+E L K A
Sbjct: 780 DKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSAL 839
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 840 RGFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV------- 884
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 885 -------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMER 937
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKAN 383
DC+IAHGAS L ERL C + + + G CR+CN+ I + +
Sbjct: 938 DCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVH 997
Query: 384 VPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+PY AKLL QEL+ +M I+ + T SGVS+
Sbjct: 998 IPYAAKLLFQELA-AMNISARMFTNRSGVSV 1027
>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
513.88]
Length = 1231
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 751 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 807
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 808 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 867
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 868 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 927
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 928 EELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 983
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 984 KFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1043
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1044 GFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1087
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1088 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1141
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1142 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1201
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1202 PYAAKLLFQELA-SMNIAARMFTNRSGVSV 1230
>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
Length = 1255
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 775 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 831
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 832 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDT 891
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 892 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 951
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 952 EELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT----KVPQIGD 1007
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1008 KFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1067
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1068 GFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1165
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR+CN+ I + ++
Sbjct: 1166 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHI 1225
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1226 PYAAKLLFQELA-AMNIAARMFTNRSGVSV 1254
>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
Length = 1255
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 775 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 831
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 832 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 891
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 892 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 951
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 952 EELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1007
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1008 KFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSKVSALR 1067
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1068 GFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1165
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR+CN+ I + ++
Sbjct: 1166 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHI 1225
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1226 PYAAKLLFQELA-AMNIAARMFTNRSGVSV 1254
>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
Length = 1256
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 222/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 776 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 832
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 833 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 892
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 893 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 952
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 953 EELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1008
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1009 KFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1068
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 1069 GFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV-------- 1112
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1113 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1166
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + V + G CR+CN+ I + ++
Sbjct: 1167 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHI 1226
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1227 PYAAKLLFQELA-SMNIAARMFTNRSGVSV 1255
>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
Length = 1223
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N R+DT+ L+YPQ+P
Sbjct: 745 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNFRMDTMANILYYPQKP 801
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 802 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 861
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P +D L ++ DI+IGK I D
Sbjct: 862 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDE 921
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 922 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 977
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 978 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1037
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1038 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1081
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1082 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1135
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A +VI ++ + C+ C++ DI + ++
Sbjct: 1136 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHI 1195
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1196 PYAAKLLFQEL-MAMNITPRLYTDRS 1220
>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
Length = 1276
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 152/513 (29%), Positives = 224/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 796 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSKRMDTMANILYYPQKP 852
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 853 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 912
Query: 101 -----------------NKDIQVKSRPSDDMLNFG----KIQSKSGDIVIGKY------- 132
+ +++K D + G ++ DI+IGK
Sbjct: 913 EKRVGINIVEKFEKPNRSDTLRLKHSTYDKLDADGIVAPGVRVSGEDIIIGKTCPINPDN 972
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE+G D S L+ TE G+V +V++++N DG + V +R + +GD
Sbjct: 973 AELGQRSAQHVKRDASTPLRSTESGIVDQVVVTTNQDGMRYVKVRVRTT----KIPQIGD 1028
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1029 KFASRHGQKGTIGVTYRQEDMPFTCEGITPDLIINPHAIPSRMTIAHLIECLLSKVSTLK 1088
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF TE VS LL G ++ G ++ + L
Sbjct: 1089 GMEGDATPF--------TEVTVDSVSDLLREHGYQSRGFEVLYHGHTGRKL--------- 1131
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1132 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERD 1186
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1187 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSF---ECRPCKNKTKIAQ 1243
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG+S+
Sbjct: 1244 VHMPYAAKLLFQEL-MSMNIAARMFTSRSGISV 1275
>gi|302814812|ref|XP_002989089.1| hypothetical protein SELMODRAFT_129173 [Selaginella moellendorffii]
gi|300143190|gb|EFJ09883.1| hypothetical protein SELMODRAFT_129173 [Selaginella moellendorffii]
Length = 766
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/511 (27%), Positives = 224/511 (43%), Gaps = 130/511 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+L ++ IP ++ + V YQ+QKHS AIG+ + NP+ R DT LFYPQ+ L
Sbjct: 274 MLSITASTIPFAQHNLSTR--VTYQAQKHSKHAIGYYSCNPSKRFDTTSDSLFYPQKQLV 331
Query: 64 WILISDCL---------GRPE---------------------DSLVMNQASLECGVFRSE 93
+ L G PE DSL+ NQA+++ G+FRS
Sbjct: 332 STSMCRLLSPNDSAMMRGWPEKLMHGQSCVVAVACYDGYNQEDSLIFNQAAIDRGLFRSI 391
Query: 94 SYKAEVDNKDIQVKS----RPSD------------DMLNFGKIQSK--SGDIVIGKYAEI 135
+ N ++Q RP + D F +I ++ S VIGK ++
Sbjct: 392 HERTHRYNINLQSSEESFGRPVEEDGSPQQRYQHLDEDGFPEIGARLQSSQAVIGKTRKL 451
Query: 136 G----ADHSIKLKHTERGLVLKVL----LSSNDDGKNFAVVS-------IRQSVNMVHSA 180
++ SI LK+ E G V +V+ ++ NF S ++ + +
Sbjct: 452 KEGTVSNSSIFLKNFEEGSVKEVVRLPKIAQGSHDVNFKTASASFPHGGVKVKIASTRAP 511
Query: 181 CLGDKFSSMHGQKGVLGF--------------------------LEQTPAQLLEAALGKG 214
GDKFSSMHGQKGV+G QT Q+LE+ GK
Sbjct: 512 QAGDKFSSMHGQKGVIGCCLSQEDLPFTRQGIVPDVIINPHAFPTRQTLGQMLESIAGKA 571
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G+ TPF++++ + L+ G + SG F L+
Sbjct: 572 AAMGVRVNTTPFSSASPDQL--------GAALHRCGFQKSG-----NERFYSGLYGS--- 615
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++++ IF + FYQ+ + M++DK+K+R G +T +P+ DR+++GGI+F +M
Sbjct: 616 ------MIKAEIFVGVCFYQKLMQMADDKIKWRRIGRHDSITRQPIKDRQKYGGIKFSQM 669
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSA-DDII 380
+ L+AHGA+ ++ ER+ +C +A++ + P CR C
Sbjct: 670 ERSSLVAHGAAASIQERMFHLSDPHQVEVCTRCDRMASIGR--SRAPSCRFCKDKFPGFA 727
Query: 381 KANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+ +PY KLL QEL+ SMGI L+ T S
Sbjct: 728 RLEIPYSCKLLVQELN-SMGIDLRLVTHSSA 757
>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida tropicalis]
Length = 1020
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 214/491 (43%), Gaps = 126/491 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 556 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYSVRMDTMANILYYPQKP 612
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 613 LATTRSMEYLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDL 672
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS +D L I+ DI+IGK I AD
Sbjct: 673 EKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADT 732
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 733 EELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTT----KIPQIGD 788
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K +
Sbjct: 789 KFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 848
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I ++LL G ++ G ++ + L
Sbjct: 849 GFEGDASPFTDVTAEAI--------AKLLREHGYQSRGFEVMYNGHTGKKLM-------- 892
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 893 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 946
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 947 CMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1006
Query: 385 PYGAKLLSQEL 395
PY AKLL QE
Sbjct: 1007 PYAAKLLFQEF 1017
>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1258
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 217/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A + D
Sbjct: 895 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDA 954
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+S+++D F V R + +GD
Sbjct: 955 EELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ + L
Sbjct: 1071 GFEGDATPFTDVTVDSI--------SGLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR C + + I + ++
Sbjct: 1169 CMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQEL-MSMNIAARMFTKRSGVSL 1257
>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
Length = 1184
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 149/503 (29%), Positives = 226/503 (44%), Gaps = 124/503 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + +YQS QA+G T+N N+R+DTL L+YPQ+P
Sbjct: 712 SLILGICASIIPFPDHNQSPRN--VYQS-AMGKQAMGVYTSNYNVRMDTLGYVLYYPQKP 768
Query: 62 L----------FWILIS--DCL--------GRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L + +C+ EDSL+MNQ+S++ G+FRS ++ V
Sbjct: 769 LVTTRAMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSE 828
Query: 102 KD------IQVKSRPSDDML------NFGKIQSKS----------GDIVIGKYAEIGA-- 137
+ I+ P+ D + N+G + DI+IGK+ I
Sbjct: 829 EKQIGSNLIEAFELPNPDEVSGLRFGNYGNLDRDGLIEPGNRVLGDDIIIGKFGPIPPEE 888
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D SI L+ +E G+V +VLLS+N G F V +R ++ + H +GDKF
Sbjct: 889 RDNRIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVKFTKVKVR-TIRVPH---IGDKF 944
Query: 187 SSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKG-ACDGL 219
+S HGQKG +G +E P L+E LGK A +G+
Sbjct: 945 ASRHGQKGTIGITYRMEDMPFTQDGIVPDIIMNPHAIPSRMTIGHLIECILGKTCAIEGM 1004
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF V E+ +S L+ G + +G ++ + L
Sbjct: 1005 EGDATPFTK----VTVEE----ISNRLHAAGFQRNGNEVMYNGHTGRQL----------- 1045
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
S IF T+YQ+ HM +DK+ R G+ LT +P R R GG+ FGEM+ DC+
Sbjct: 1046 ---ESRIFIGPTYYQRLKHMVDDKIHARAKGAITMLTRQPREGRSREGGLRFGEMERDCM 1102
Query: 340 IAHGASGNLHERL----------KCKNVANVIQRVVGGPY--CRICNSADDIIKANVPYG 387
I+HGA+ L ERL C+ + +G + C++C++ I + +PY
Sbjct: 1103 ISHGAAKMLKERLFDQCDAYRVHVCELCGLICTADLGKQHYECKVCSNKSQISQVCLPYA 1162
Query: 388 AKLLSQELSFSMGITLKFDTQLS 410
KLL QEL +M I + Q +
Sbjct: 1163 CKLLLQEL-MAMSIYPRLQLQTA 1184
>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
Length = 1256
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 223/510 (43%), Gaps = 126/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 775 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 831
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYK--AEV 99
L I+ C EDS++MNQ+S++ G+FRS Y+ E
Sbjct: 832 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEA 891
Query: 100 DNK----DIQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ K I+ +P DD L ++ DI+IGK A
Sbjct: 892 ERKLGLQTIEKFEKPMRSDTLGMRKGTYDKIEDDGLVAPGVRVTGEDIIIGKTAPLAPES 951
Query: 134 -EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++ +D + +V +R + +GD
Sbjct: 952 EELGQRTKAHTKVDVSTPLRATESGIVDQVLLTTGND-PDLRLVKVRMRTTKIPQ--IGD 1008
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1009 KFASRHGQKGTIGITYRHEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1068
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1069 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMYNGHTGKKL--------- 1111
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1112 -----KAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1166
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR+CN+ I + ++
Sbjct: 1167 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHI 1226
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1227 PYAAKLLFQELA-AMNIAARMFTDRSGVSI 1255
>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb03]
gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb18]
Length = 1258
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 217/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A + D
Sbjct: 895 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDA 954
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+S+++D F V R + +GD
Sbjct: 955 EELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ + L
Sbjct: 1071 GFEGDATPFTDVTVDSI--------SGLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR C + + I + ++
Sbjct: 1169 CMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQEL-MSMNIAARMFTKRSGVSL 1257
>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
Length = 1254
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 223/510 (43%), Gaps = 126/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 773 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 829
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYK--AEV 99
L I+ C EDS++MNQ+S++ G+FRS Y+ E
Sbjct: 830 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEA 889
Query: 100 DNK----DIQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ K I+ +P DD L ++ DI+IGK A
Sbjct: 890 ERKLGLQTIEKFEKPMRSDTLGMRKGTYDKIEDDGLVAPGVRVTGEDIIIGKTAPLAPES 949
Query: 134 -EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++ +D + +V +R + +GD
Sbjct: 950 EELGQRTKAHTKVDVSTPLRATESGIVDQVLLTTGND-PDLRLVKVRMRTTKIPQ--IGD 1006
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1007 KFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1066
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1067 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMYNGHTGKKL--------- 1109
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1110 -----KAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1164
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR+CN+ I + ++
Sbjct: 1165 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHI 1224
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1225 PYAAKLLFQELA-AMNIAARMFTDRSGVSI 1253
>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
Length = 1222
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 217/506 (42%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ +IP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 744 SMILGVAASVIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 800
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 801 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRSYMDQ 860
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
ES++ +++K + DD L ++ DI+IGK I D
Sbjct: 861 EKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTPIPPDA 920
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 921 EELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT----KVPQIGD 976
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 977 KFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1036
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I S+LL G ++ G ++ + L
Sbjct: 1037 GNEGDASPFTDITVDGI--------SKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1080
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1081 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A V+ ++ + CR C + DI + ++
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHI 1194
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I + T S
Sbjct: 1195 PYAAKLLFQEL-MAMNIAPRLYTDRS 1219
>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
dendrobatidis JAM81]
Length = 1312
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 209/493 (42%), Gaps = 131/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + +YQS QA+G TN +R+DT+ LFYPQ+P
Sbjct: 840 SMILGICASIIPFPDHNQSPRN--VYQSAM-GKQAMGLFLTNFQLRMDTMSNILFYPQKP 896
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L ++ C EDSL+MNQ+S++ G+FRS Y+ +D
Sbjct: 897 LATTRAMEFMHFRDLPAGINAVVAIACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDQ 956
Query: 102 K------DIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +PS DD L ++ DI+IGK I AD
Sbjct: 957 EKKVGMISTETLEKPSRDTTLRLKHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADS 1016
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N DG F V +R S+ + H +GD
Sbjct: 1017 TELGQRTTMHTKRDASTPLKSTENGIVDQVLITTNQDGFKFVKVRVR-SIRIPH---MGD 1072
Query: 185 KFSSMHGQKGVLGFLEQTP--------------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G +T L+E L K +
Sbjct: 1073 KFASRHGQKGTVGITYRTEDMPFTADGITPDLIINPHAIPSRMTIGHLVECLLSKVSTFT 1132
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L G + G ++ + L
Sbjct: 1133 GDEGDATPFTDVTVEAI--------SQALQGYGYQRRGFEVLYNGHTGRKL--------- 1175
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ ++T T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1176 -----NAQVYTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRFGEMERD 1230
Query: 338 CLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HGA+ L ERL C + VAN+ + CR C + I +
Sbjct: 1231 CMISHGAANFLKERLFDASDAYRVHVCDHCGLMAVANLKKNSFE---CRSCRNKTQISQV 1287
Query: 383 NVPYGAKLLSQEL 395
+PY KLL QEL
Sbjct: 1288 YLPYACKLLFQEL 1300
>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
Length = 1260
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 219/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN N R+DT+ L+YPQ+P
Sbjct: 780 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVTLTNYNTRMDTMANVLYYPQKP 836
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 837 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQ 896
Query: 93 ---------ESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKS----GDIVIGKYA------ 133
E+++ V +++K D + G I S DI+IGK A
Sbjct: 897 EKRVGMSVVEAFEKPVRADTMRMKKGTYDKLDEDGIITPGSRVSGEDILIGKTAPMPPDA 956
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G++ +VL+++N +G F V +R V V +GD
Sbjct: 957 EELGQRTTAHTKRDVSTPLRSTENGVIDQVLVTTNTEGLRF--VKVRTRVTKVPQ--IGD 1012
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA +
Sbjct: 1013 KFASRHGQKGTVGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALN 1072
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T + VS++L G + G ++ + L
Sbjct: 1073 GQEGDATPFTDVT--------VTSVSEILASHGFQQRGFEVMYNGHTGRKL--------- 1115
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1116 -----NAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1170
Query: 338 CLIAHGASGNLHERLK-------------CKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + CR C + I + +
Sbjct: 1171 CMIAHGASSFLKERLLDVSDAFRVHVCEICGLMTPIASLKKQQFECRPCKNKTRIAQIII 1230
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M + + T SG+S+
Sbjct: 1231 PYAAKLLFQELA-AMNVATRMFTTRSGISI 1259
>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
Length = 1327
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 214/504 (42%), Gaps = 134/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R+DT+ LFYPQ+P
Sbjct: 810 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNYQVRLDTMANILFYPQKP 866
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L D L EDS++MNQ++++ G+FRS Y+ +D
Sbjct: 867 LATTRSMDYLHFRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSFYYRTYMDT 926
Query: 102 KD----IQVKS--RPS-----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD 138
+ +Q++S +PS D + G+ Q + GDI+IGK A I D
Sbjct: 927 EKRQGALQMESFEKPSRLDTLRLKRGTYDKLGDDGFVRVGE-QVRGGDIIIGKTAPIAPD 985
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S LK TE G + +V++++N DG FA V +R + G
Sbjct: 986 SEELGQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNADGLKFAKVRVRST----RIPQTG 1041
Query: 184 DKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GAC 216
DKF+S HGQKG +G Q T L+E L K A
Sbjct: 1042 DKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPHAIPSRMTIGHLVECLLSKVSAL 1101
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G ATPF+ T VS +L G ++ G+ + + L
Sbjct: 1102 TGQEGDATPFSDVT--------VDSVSSVLKAQGFQDRGLEIMSNGHTGRKLA------- 1146
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1147 -------AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMER 1199
Query: 337 DCLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIK 381
DC+IAHG +G L ER+ +AN++++ CR C + I +
Sbjct: 1200 DCMIAHGVAGFLKERMFEASDAFRIHVCDICGMTAIANLMKQTF---ECRACKNKTAISQ 1256
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
VPY AKLL EL +M I +
Sbjct: 1257 VLVPYSAKLLFSELQ-AMNIATRI 1279
>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
SLH14081]
Length = 1258
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 219/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQ+ QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQA-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 895 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ Y L
Sbjct: 1071 GFEGDATPFTDVTVDSI--------SSLLREHGYQSRGFEVMYNGYTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + CR C + + I + ++
Sbjct: 1169 CMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKSDFECRACKNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQEL-MSMNIAARLFTKRSGVSL 1257
>gi|67515350|gb|AAY68204.1| RNA polymerase IV second largest subunit [Selaginella erythropus]
Length = 593
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 210/477 (44%), Gaps = 108/477 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LGLS +IP V +Q+QKH QAIG + R++ L+YPQ+PL
Sbjct: 150 FLGLSASVIP--FLDHNHSSRVTHQAQKHGKQAIGVYACDNLSRMEPT-AHLYYPQKPLV 206
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESY---KAEVD 100
++ L P EDSL++NQAS++ G+FRS + KA +D
Sbjct: 207 HSWLAQHLTCPXLTNGTNCVVAVASYGGFNQEDSLIVNQASVDRGLFRSTHFFVKKASLD 266
Query: 101 NKDIQVKSRPSDDM------LNFGKIQSKSGDIVIGKYAEIGADHSI--KLKHTERGLVL 152
+K Q + SD L + + +GD+VIG+ A + K+ + E+ V
Sbjct: 267 SKSSQHFGKSSDSASLDSDGLPYIGAKMTAGDVVIGRMALTKPXNKFVDKMSNLEQAWVD 326
Query: 153 KVLLSSNDDGKNFAVVSIRQSVNMVHSAC--LGDKFSSMHGQKGVLGFL----------- 199
+V+ S ++ V +V + S C +GDKFSSMHGQKGV+G +
Sbjct: 327 QVVCSMGEEQDQRHV-----NVRLRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQ 381
Query: 200 ---------------EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQ 244
QT AQ+LE+ +GK A GL TPF T ++Q
Sbjct: 382 GIVPDVIINPHAFPSRQTLAQMLESLVGKTAAMGLCLGDTPF--------THLRAEQLAQ 433
Query: 245 LLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVR---SLIFTWITFYQQFIHMSE 301
L G + G D + C R ++ +TFYQ+ H+S
Sbjct: 434 KLAKRGFQKWG-----------------QDRVYSGCTGRMTGAMATFGLTFYQRLNHLSR 476
Query: 302 DKVKFR-NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------- 352
DK+K R G PLT +PV DR+R GG +FGEM+ DCL+AHGAS + ERL
Sbjct: 477 DKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEMERDCLVAHGASATVQERLFLVSDKSL 536
Query: 353 --KCKNVANVIQ-RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C N + P C C + +PY KLL EL +MG+ ++F+
Sbjct: 537 VHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVEMPYACKLLRMELQ-AMGVDMRFZ 592
>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1198
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 148/510 (29%), Positives = 219/510 (42%), Gaps = 132/510 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQ+ QA+G TN R+DTL L+YPQ+P
Sbjct: 718 SMILGICASIIPFPDHNQSPRN--TYQA-AMGKQAMGVHLTNFQQRMDTLSNILYYPQKP 774
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y++ +D
Sbjct: 775 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSIFYRSYMDT 834
Query: 102 KD------------------IQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + N G I + DI+IGK A I D
Sbjct: 835 EKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAVTGDDIIIGKTAPIPPDS 894
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N DG F+ V +R + +GD
Sbjct: 895 EELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRST----RIPQIGD 950
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 951 KFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECLLSKVATLQ 1010
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S +L+ G + G+ ++ + L
Sbjct: 1011 GSEGDATPF--------TEVTVESISSILHEKGYQKRGLEVMYNGHTGRKL--------- 1053
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1054 -----QAQVYIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1108
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHG + L ERL +AN+ ++ CR C + DI +
Sbjct: 1109 CMIAHGVAAFLKERLFDASDAYRLHVCDLCGMTAIANLKKQTFE---CRACRNKTDISQI 1165
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSGV 412
+VPY AKLL QEL SMGI+ + + +S
Sbjct: 1166 HVPYAAKLLFQELQ-SMGISPRLYSDVSNT 1194
>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
ER-3]
gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1258
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 219/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQ+ QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQA-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 895 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ Y L
Sbjct: 1071 GFEGDATPFTDVTVDSI--------SSLLREHGYQSRGFEVMYNGYTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + CR C + + I + ++
Sbjct: 1169 CMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKSDFECRACKNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQEL-MSMNIAARLFTKRSGVSL 1257
>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
Length = 1257
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 777 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 833
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 834 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYTDT 893
Query: 102 KD------IQVKSRP-SDDMLNFGK---------------IQSKSGDIVIGKYA------ 133
+ ++ +P D + K ++ DI+IGK A
Sbjct: 894 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEA 953
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 954 EELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1009
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1010 KFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1069
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + +
Sbjct: 1070 GFEGDATPFTDVT--------VDSVSRLLREHGYQSRGFEVMYNGHTGRKMV-------- 1113
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1114 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1167
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR+CN+ I + ++
Sbjct: 1168 CMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHI 1227
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1228 PYAAKLLFQELA-AMNIAARMFTNRSGVSV 1256
>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1185
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 148/504 (29%), Positives = 214/504 (42%), Gaps = 130/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 701 SMILGVCGSIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 758 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 817
Query: 99 VDNKDIQVK---SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ +K RP+ DD L + D++IGK +
Sbjct: 818 EKKQGTLIKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDD 877
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D S L+H+E G++ +VLL++N DG F + +R + +GDKF
Sbjct: 878 NASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRS----IRIPQIGDKF 933
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 934 SSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 993
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 994 EGDATPFTDVT--------VDNISKALHKCGYQMRGFEVMYNGHTGRRL----------- 1034
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1035 ---TAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1091
Query: 340 IAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANV 384
IAHGA+ L ERL C++ +AN+ + CR C + DI++ ++
Sbjct: 1092 IAHGAAHFLKERLFDQSDAYRVHVCEHCGIIAIANLKKNTYE---CRGCKNNTDIVQVHI 1148
Query: 385 PYGAKLLSQELSFSMGITLKFDTQ 408
PY KLL QEL SM I + T+
Sbjct: 1149 PYACKLLFQEL-MSMAIAPRMFTK 1171
>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
Length = 1202
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 217/492 (44%), Gaps = 119/492 (24%)
Query: 3 FLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL 62
+LG+ IIP Q + + YQS QA+G ++N N+R+DTL L+YPQ+PL
Sbjct: 736 MILGVCASIIPFPDQNQSPRN--TYQS-AMGKQAMGVYSSNFNLRMDTLSHLLYYPQKPL 792
Query: 63 FWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAEV 99
+ L EDSL+MNQ+S++ G+FRS +Y +E
Sbjct: 793 VCTRAMEFLRFRELPAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTYVSEE 852
Query: 100 DNK---DIQVKSRPSDDML------NFGKIQSK----------SGDIVIGKYAEI----- 135
+ I+ RP+ + ++ K+ S D++IG+ +
Sbjct: 853 KQQGSVTIEKFERPNPQFVAGMKRGDYSKLDSDGLVEPGSRVLGDDVIIGRISPTLPNQD 912
Query: 136 ---GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
D S+ L+ +E G+V VLLS N G F V +R V +GDKF+S HGQ
Sbjct: 913 VAPKRDCSLCLRRSENGVVHSVLLSVNSKGSRFCKVKVRS----VRIPQIGDKFASRHGQ 968
Query: 193 KGVLGF---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATP 225
KG +G +E P L+E +GK GA GL ATP
Sbjct: 969 KGTIGITYRMEDMPFTCQGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGAIGGLEGDATP 1028
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F++ T I + L+ +G G ++ Y L++S
Sbjct: 1029 FSSLTVKEIASK--------LHELGYERHGNEALYNGYTGR--------------LLKSK 1066
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF T+YQ+ HM EDK+ R G LT +P R R GG+ FGEM+ DC+I+HGA+
Sbjct: 1067 IFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAA 1126
Query: 346 GNLHERLKCKNVAN-----------VIQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQ 393
L ERL ++ A VI + G + C C++ +I + ++PY KLL Q
Sbjct: 1127 KVLKERLFDQSDAYRVHVCDMCGLIVIADLNRGSFECSACDNKTNISQVSIPYACKLLLQ 1186
Query: 394 ELSFSMGITLKF 405
EL SM I K
Sbjct: 1187 EL-MSMAIYPKL 1197
>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
Length = 1221
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 146/506 (28%), Positives = 219/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ +IP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 743 SMILGVAASVIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKP 799
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 800 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 859
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
ES++ +++K + DD L ++ D++IGK I D
Sbjct: 860 EKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDA 919
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 920 EELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT----KIPQIGD 975
Query: 185 KFSSMHGQKGVLGFLEQTP--------------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G +T A L+E L K A
Sbjct: 976 KFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1035
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I S+LL G ++ G ++ + L
Sbjct: 1036 GNEGDASPFTDITVDGI--------SRLLREHGYQSRGFEVMYNGHTGKKLM-------- 1079
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1080 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1133
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A +V+ ++ + CR C + DI + ++
Sbjct: 1134 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHI 1193
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I + T S
Sbjct: 1194 PYAAKLLFQEL-MAMNIAPRLYTDRS 1218
>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
Length = 1222
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 217/506 (42%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 744 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 800
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 801 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 860
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
ES++ +++K + DD L ++ D++IGK I D
Sbjct: 861 EKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDA 920
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 921 EELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT----KVPQIGD 976
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 977 KFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1036
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I S+LL G ++ G ++ + L
Sbjct: 1037 GNEGDASPFTDITVDGI--------SRLLREHGYQSRGFEVMYNGHTGKKLM-------- 1080
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1081 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A V+ ++ + CR C + DI + ++
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIFQVHI 1194
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I + T S
Sbjct: 1195 PYAAKLLFQEL-MAMNIAPRLYTDRS 1219
>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
112818]
Length = 1258
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL + I +V G + CR C + + I + ++
Sbjct: 1169 CMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1258
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPES 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S++++ F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR C + + I + ++
Sbjct: 1169 CMIAHGASAFLKERLFDVSDPFRIHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGV++
Sbjct: 1229 PYAAKLLFQEL-MSMNIAARMYTKRSGVTL 1257
>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
127.97]
Length = 1258
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL + I +V G + CR C + + I + ++
Sbjct: 1169 CMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
Length = 1258
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMVGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL + I +V G + CR C + + I + ++
Sbjct: 1169 CMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1174
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 212/501 (42%), Gaps = 125/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DTL +FYPQ+P
Sbjct: 703 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGMYVTNYQIRMDTLGYVMFYPQKP 759
Query: 62 L----------FWILISDCLG----------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L + C EDS++MNQ++++ G+FRS Y++ D
Sbjct: 760 LVTTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDE 819
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ Q RP DD L + DI+IGK A + D
Sbjct: 820 EKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLICPGTRVSGDDIIIGKTAPLPEDD 879
Query: 140 -------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S +KH E G++ +VLL++ND G F + +R + + +GDKF
Sbjct: 880 TAVLSKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRS----MRTPQVGDKF 935
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGL 219
SS HGQKG +G E P QL+E +GK AC G
Sbjct: 936 SSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGK 995
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S +L+ G + G ++ +
Sbjct: 996 EGDATPFTPVTA--------EDISSMLHKCGYQKRGNEVMYNGHTGR------------- 1034
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++ + IF T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ DC+
Sbjct: 1035 -MLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCI 1093
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPY 386
++HGA+ L ERL KC +A + C+ + +++ VPY
Sbjct: 1094 MSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMVPY 1153
Query: 387 GAKLLSQELSFSMGITLKFDT 407
KLL QEL SM I + T
Sbjct: 1154 ACKLLFQEL-MSMAIAPRLIT 1173
>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
ARSEF 23]
Length = 1262
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 150/513 (29%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 782 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 838
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 839 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 898
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P DD + ++ DI+IGK A I
Sbjct: 899 EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQES 958
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V V+L+ N D + V +R + +GD
Sbjct: 959 QDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTT----KIPQIGD 1014
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1015 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1074
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1075 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGKKL--------- 1117
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1118 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1172
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1173 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1229
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1230 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1261
>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 144/487 (29%), Positives = 214/487 (43%), Gaps = 126/487 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 753 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 809
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 810 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDI 869
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K ++ +P+ +D L ++ DI+IGK I AD
Sbjct: 870 EKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 930 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTT----KVPQIGD 985
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 986 KFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1045
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF V TEQ +S LL G ++ G ++ + L
Sbjct: 1046 GFEGDASPFT----DVTTEQ----ISTLLRDHGYQSRGFEVMYNGHTGKKLM-------- 1089
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1090 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1143
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1144 CMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1203
Query: 385 PYGAKLL 391
PY AKLL
Sbjct: 1204 PYAAKLL 1210
>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
CQMa 102]
Length = 1263
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 150/513 (29%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 783 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 839
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 840 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 899
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P DD + ++ DI+IGK A I
Sbjct: 900 EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQES 959
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V V+L+ N D + V +R + +GD
Sbjct: 960 QDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTT----KIPQIGD 1015
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1016 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1075
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1076 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGKKL--------- 1118
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1119 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1173
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1174 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1230
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1231 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1262
>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1258
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL + I +V G + CR C + + I + ++
Sbjct: 1169 CMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 999
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 143/480 (29%), Positives = 208/480 (43%), Gaps = 104/480 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DTL LFYPQ+P
Sbjct: 549 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGMYVTNYQIRMDTLGYVLFYPQKP 605
Query: 62 L----------FWILISDCLG----------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L + C EDS++MNQ++++ G+FRS Y++ D
Sbjct: 606 LVTTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDE 665
Query: 102 KDIQVK------SRPSDDM---LNFGKIQSKSGDIVIGKYAEIGA-----DHSIKLKHTE 147
+ Q RP D + G D +I A + D S +KH E
Sbjct: 666 EKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSKRFSKKDCSTGMKHAE 725
Query: 148 RGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP- 203
G++ +VLL++ND G F + +R + + +GDKFSS HGQKG +G E P
Sbjct: 726 TGIIDQVLLTTNDQGLRFVKLRVRS----MRTPQVGDKFSSRHGQKGTVGMTYTQEDMPF 781
Query: 204 ----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQS 240
QL+E +GK AC G ATPF T
Sbjct: 782 TCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPFTPVTA--------E 833
Query: 241 FVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMS 300
+S +L+ G + G ++ + ++ + IF T+YQ+ HM
Sbjct: 834 DISTMLHKCGYQKRGNEVMYNGHTGR--------------MLDAQIFIGPTYYQRLKHMV 879
Query: 301 EDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------- 352
+DK+ R G Q LT +P+ R R GG+ FGEM+ DC+++HGA+ L ERL
Sbjct: 880 DDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYR 939
Query: 353 -----KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
KC +A + C+ + +++ VPY KLL QEL SM I + T
Sbjct: 940 IHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMVPYACKLLFQEL-MSMAIAPRLIT 998
>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
Length = 1258
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 221/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL + I +V G + CR C + + I + ++
Sbjct: 1169 CMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNRNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1229 PYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
Length = 1258
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 220/510 (43%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPES 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S++++ F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+IAHGAS L ERL C + + + G CR C + + I + ++
Sbjct: 1169 CMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHI 1228
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL SM I + T+ SGV++
Sbjct: 1229 PYAAKLLFQEL-MSMNIAARMYTKRSGVTL 1257
>gi|302804103|ref|XP_002983804.1| hypothetical protein SELMODRAFT_118653 [Selaginella moellendorffii]
gi|300148641|gb|EFJ15300.1| hypothetical protein SELMODRAFT_118653 [Selaginella moellendorffii]
Length = 762
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 142/511 (27%), Positives = 224/511 (43%), Gaps = 130/511 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+L ++ IP ++ + V YQ+QKHS AIG+ + NP+ R DT LFYPQ+ L
Sbjct: 270 MLSITASTIPFAQHNLSTR--VTYQAQKHSKHAIGYYSCNPSKRFDTTSDSLFYPQKQLV 327
Query: 64 WILISDCL---------GRPE---------------------DSLVMNQASLECGVFRSE 93
+ L G PE DSL+ NQA+++ G+FRS
Sbjct: 328 STSMCRLLSPNDSAMMRGWPEKLMHGQSCVVAVACYDGYNQEDSLIFNQAAIDRGLFRSI 387
Query: 94 SYKAEVDNKDIQVKS----RPSD------------DMLNFGKIQSK--SGDIVIGKYAEI 135
+ N ++Q RP + D F +I ++ S VIGK ++
Sbjct: 388 HERTHRYNINLQSSEESFGRPVEEDGSPQQRYQHLDEDGFPEIGARLQSSQAVIGKTRKL 447
Query: 136 G----ADHSIKLKHTERGLVLKVLL------SSNDDGKNFAVVS-----IRQSVNMVHSA 180
++ SI LK+ E G V +V+ S+D A S ++ + +
Sbjct: 448 KEGTVSNSSIFLKNFEEGSVKEVVRLPKIAQGSHDVNVKTASASFPHGGVKVKIASTRAP 507
Query: 181 CLGDKFSSMHGQKGVLGF--------------------------LEQTPAQLLEAALGKG 214
GDKFSSMHGQKGV+G QT Q+LE+ GK
Sbjct: 508 QAGDKFSSMHGQKGVIGCCLSQEDLPFTRQGIVPDVIINPHAFPTRQTLGQMLESIAGKA 567
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G+ TPF++++ + L+ G + SG F L+
Sbjct: 568 AAMGVRVNTTPFSSASPDQL--------GAALHRCGFQKSG-----NERFYSGLYGS--- 611
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++++ IF + FYQ+ + M++DK+K+R G +T +P+ DR+++GGI+F +M
Sbjct: 612 ------MIKAEIFVGVCFYQKLMQMADDKIKWRRIGRHDSITRQPIKDRQKYGGIKFSQM 665
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSA-DDII 380
+ L+AHGA+ ++ ER+ +C +A++ + P CR C
Sbjct: 666 ERSSLVAHGAAASIQERMFHLSDPHQVEVCTRCDRMASIGRSR--APSCRFCKDKFPGFA 723
Query: 381 KANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+ +PY KLL QEL+ SMGI L+ T S
Sbjct: 724 RLEIPYSCKLLVQELN-SMGIDLRLVTDSSA 753
>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
206040]
Length = 1261
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 221/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P +D + ++ DI+IGK A I A
Sbjct: 898 EKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAET 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V +V+++ N D + V +R + +GD
Sbjct: 958 QDLGTRTTMHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTT----KIPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGRKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMYTNRSGASV 1260
>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1207
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 149/504 (29%), Positives = 211/504 (41%), Gaps = 130/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 726 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 782
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 783 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 842
Query: 99 VDNKDIQVKS-------------------RPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK + DD + D++IGK I D
Sbjct: 843 EKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDD 902
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F + +R + +GDKF
Sbjct: 903 AQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRS----IRIPQIGDKF 958
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 959 SSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1018
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + P+ +
Sbjct: 1019 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGH-----TGRPLTYT--- 1062
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1063 ------IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1116
Query: 340 IAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKANV 384
IAHGA+ L ERL ++ +AN+ + CR C + DI++ +
Sbjct: 1117 IAHGAAHFLKERLFDQSDAYRVHVCALCGIVAIANLKKNSFE---CRHCKNKTDIVQVYI 1173
Query: 385 PYGAKLLSQELSFSMGITLKFDTQ 408
PY KLL QEL +M I + T+
Sbjct: 1174 PYACKLLLQEL-MAMAIAPRLLTK 1196
>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
Length = 1262
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 220/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 782 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 838
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 839 LGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 898
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ +V +P +D + ++ DI+IGK A I AD
Sbjct: 899 EKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDADT 958
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V+++ N D + V +R + +GD
Sbjct: 959 QDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTT----KIPQIGD 1014
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1015 KFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1074
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1075 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGRKL--------- 1117
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1118 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1172
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1173 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1229
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1230 IHIPYAAKLLFQELQ-SMNIAARMFTDRSGASV 1261
>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 220/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P +D + ++ DI+IGK A I
Sbjct: 898 EKKVGLNYTEVFEKPFQQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V V+++ N D + V +R + +GD
Sbjct: 958 QDLGTRTTVHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTT----KIPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGRKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAAAFLKERLFEVSDAFRVHVCEVCGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SGVS+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTSRSGVSI 1260
>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
Length = 1261
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 220/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P +D + ++ DI+IGK A I A
Sbjct: 898 EKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAET 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V V+++ N D + V +R + +GD
Sbjct: 958 QDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTT----KIPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGRKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGASV 1260
>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
Length = 1029
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 146/506 (28%), Positives = 223/506 (44%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 553 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNFDQRMETMANILYYPQKP 609
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + D L EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 610 LARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDS 669
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P+ +D + ++ DI++GK A
Sbjct: 670 EKSVGHSVVEQFEKPTRSDTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDA 729
Query: 134 ---------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
I D S L+ TE G+V +V+L++ +G FA V +R + +GD
Sbjct: 730 EELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRTT----KVPQIGD 785
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 786 KFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLR 845
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ VS+LL +G ++ G ++ + +
Sbjct: 846 GDEGDATPFTKVT---VTQ-----VSELLRTMGYQSRGFEVMYNGHTGRKMV-------- 889
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 890 ------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERD 943
Query: 338 CLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL C + VI ++ + C+ CN+ + I + +
Sbjct: 944 CMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNNKNKISQIYL 1003
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL ++M I + T+ S
Sbjct: 1004 PYAAKLLFQEL-WAMNIAARLYTKRS 1028
>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
Length = 1270
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 221/512 (43%), Gaps = 133/512 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 790 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 846
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 847 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 906
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P +D + ++ DI+IGK A I ++
Sbjct: 907 EKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 966
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L+ N D + V +R + +GD
Sbjct: 967 QDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTT----KIPQIGD 1022
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1023 KFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1082
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1083 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEVMYNGHTGRKL--------- 1125
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1126 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1180
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1181 CMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1237
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVS 413
++PY AKLL QEL +M I + T SGVS
Sbjct: 1238 IHIPYAAKLLFQELQ-AMNIAARMFTNRSGVS 1268
>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
Length = 1261
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P +D + ++ DI+IGK A I
Sbjct: 898 EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G++ V+L+ N D + V +R + +GD
Sbjct: 958 QDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGKKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1260
>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
Length = 1261
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P +D + ++ DI+IGK A I
Sbjct: 898 EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G++ V+L+ N D + V +R + +GD
Sbjct: 958 QDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTT----KVPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGKKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1260
>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 1170
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 215/506 (42%), Gaps = 132/506 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ C IIP + + YQ+ QA+G TN +R+DT+ LFYPQ+P
Sbjct: 697 SMILGICCSIIPFPDHNQSPRN--TYQA-AMGKQAMGVYITNYQLRMDTMAHVLFYPQKP 753
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++NQ++++ G+FRS Y+A D
Sbjct: 754 LVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE 813
Query: 102 KDIQ------VKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ Q V +P DD L ++ DI+IGK +
Sbjct: 814 QKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSD 873
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+L+++ +G F V +R + +GD
Sbjct: 874 DDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRS----MRVPQIGD 929
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKG G T QL+E LGK A
Sbjct: 930 KFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSAST 989
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L+ IG + +G ++ + MD
Sbjct: 990 GDEGDATPFTDVTVEAI--------SQALHKIGYQMTGHEVMYNGHT-----GRRMD--- 1033
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R+ G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1034 ------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERD 1087
Query: 338 CLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HGA+ L ERL ++ +AN+ + CR C + I +
Sbjct: 1088 CMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFE---CRRCKNKTQISQI 1144
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQ 408
+PY AKLL QEL SM I + TQ
Sbjct: 1145 RMPYAAKLLFQEL-MSMSIAPRMFTQ 1169
>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
Length = 1210
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 209/503 (41%), Gaps = 126/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 735 AMILGILASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNYQVRMDTMANILYYPQKP 791
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+ +D
Sbjct: 792 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQSSIDRGLFRSIFYRTYMDQ 851
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ RP+ DD L + DI+IGK A + DH
Sbjct: 852 EKKIGMTVMEEFERPTRSTTLRMKHGTYDKLEDDGLIAPGTRVSGDDIIIGKTAPVPPDH 911
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N +G F V +R + +GD
Sbjct: 912 EELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRST----RIPQIGD 967
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 968 KFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALS 1027
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G + G ++ + L
Sbjct: 1028 GLEGDATPF--------TEVTVEAVSKLLRSHGFHSRGFEVMYHGHTGRKLV-------- 1071
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ H+ +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1072 ------AQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125
Query: 338 CLIAHGASGNLHERL-KCKNVANV----------IQRVVGGPY-CRICNSADDIIKANVP 385
C I+HG S L ERL C + V I Y CR C + + +P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDLCGLIAIASFKKNSYECRSCQNRTRFSQIYLP 1185
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y AKLL QEL SM I + T+
Sbjct: 1186 YAAKLLFQEL-MSMNIAPRLFTK 1207
>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
Length = 1261
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P +D + ++ DI+IGK A I
Sbjct: 898 EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G++ V+L+ N D + V +R + +GD
Sbjct: 958 QDLGTRTSVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTT----KIPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS+LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSELLRKHGYQSRGFEIMYNGHTGKKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1260
>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
Length = 1175
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 136/473 (28%), Positives = 209/473 (44%), Gaps = 94/473 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ I+P + + YQS QA+G TN +R+DT LFYPQ+P
Sbjct: 706 AMILGVCASIVPFPDHNQSPRN--TYQS-AMGKQAMGMYVTNYQVRMDTQGYVLFYPQKP 762
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS +MNQ+S++ G+FRS SYK E
Sbjct: 763 LVTTRNMEYLHFRELPAGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFRSIFFRSYKTE 822
Query: 99 VD-------------NKDIQVKSRP------SDDMLNFGKIQSKSGDIVIGKYAEI---- 135
N++I +R DD + + DIVIGK + I
Sbjct: 823 EKKQGSLVQESIERPNREITAGTRHGTYDKLDDDGIAPPGTRVSGDDIVIGKTSPIPDDG 882
Query: 136 --------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D S L+H+E G++ VL+++ DG+ F ++ V V +GDKF+
Sbjct: 883 SGLPQRYSKKDASTALRHSESGMIDSVLVTTGADGQRF----VKMRVRSVRIPQVGDKFA 938
Query: 188 SMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLN 247
S HGQKG +G + T + +A G + +A P + G ++ ++ +S++
Sbjct: 939 SRHGQKGTIG-ITYTQEDMPFSAEGISPDLIINPHAIPSRMTIGHLV----EALMSKVAA 993
Query: 248 CIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFI 297
C+G F + L C + + +++ IF T+YQ+
Sbjct: 994 CMGKEGDATPFTSVTVDNISAALHRCGYQSRGWEVMYNGHTGRQLQAQIFLNPTYYQRLK 1053
Query: 298 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN- 356
HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L ERL ++
Sbjct: 1054 HMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGAAAFLKERLYDQSD 1113
Query: 357 --------------VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
VAN+ + YC C + I++ +PY KLL QEL
Sbjct: 1114 AYRVHVCSVCGLIAVANLKKNQF---YCTACKNTTGIVQVFIPYACKLLFQEL 1163
>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1263
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 145/506 (28%), Positives = 223/506 (44%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 788 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNFDQRMETMSNILYYPQKP 844
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + D L EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 845 LARTMAMDYLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDS 904
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P+ +D + ++ DI++GK A + D
Sbjct: 905 EKSVGHSVVEQFEKPTRADTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDA 964
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++ +G FA V +R + +GD
Sbjct: 965 EELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRTT----KVPQIGD 1020
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1021 KFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLR 1080
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ +S+LL +G ++ G ++ + L
Sbjct: 1081 GDEGDATPFTKVT---VTQ-----ISELLRNMGYQSRGFEVMYNGHTGRKLV-------- 1124
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1125 ------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERD 1178
Query: 338 CLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGAS L ERL C + VI ++ + C+ CN+ + I + +
Sbjct: 1179 CMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNNKNKISQIYL 1238
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL ++M I + T+ S
Sbjct: 1239 PYAAKLLFQEL-WAMNIAARLYTKRS 1263
>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
Length = 1269
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 220/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 789 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 845
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 846 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 905
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P +D + ++ DI+IGK A I
Sbjct: 906 EKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 965
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V +V+L+ N D + V +R + +GD
Sbjct: 966 QDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTT----KIPQIGD 1021
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1022 KFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1081
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS +L G ++ G ++ + L
Sbjct: 1082 GMEGDATPFTDVT--------VDSVSDILRKHGYQSRGFEVMYNGHTGRKL--------- 1124
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1125 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1179
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1180 CMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1236
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL +M I + T SGVS+
Sbjct: 1237 IHIPYAAKLLFQELQ-AMNIAARMFTNRSGVSI 1268
>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
Length = 1210
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 207/503 (41%), Gaps = 126/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 735 AMILGILASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNYQVRMDTMANILYYPQKP 791
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQAS++ G+FRS Y+ D
Sbjct: 792 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQ 851
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ RP DD L + DI+IGK A I DH
Sbjct: 852 EKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDH 911
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N +G F V +R + +GD
Sbjct: 912 EELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRST----RIPQIGD 967
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 968 KFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALS 1027
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1028 GFEGDATPFTDVTVEA--------VSKLLRSHGFQSRGFEVMYHGHTGRKLV-------- 1071
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ H+ +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1072 ------AQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125
Query: 338 CLIAHGASGNLHERL-KCKNVANVIQRVVGGPY-----------CRICNSADDIIKANVP 385
C I+HG S L ERL C + VI + G CR C + + +P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y AKLL QEL SM I + T+
Sbjct: 1186 YAAKLLFQEL-MSMNIAPRLFTK 1207
>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
972h-]
gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
polypeptide
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
Length = 1210
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 207/503 (41%), Gaps = 126/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 735 AMILGILASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNYQVRMDTMANILYYPQKP 791
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQAS++ G+FRS Y+ D
Sbjct: 792 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQ 851
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ RP DD L + DI+IGK A I DH
Sbjct: 852 EKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDH 911
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N +G F V +R + +GD
Sbjct: 912 EELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRST----RIPQIGD 967
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 968 KFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALS 1027
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1028 GFEGDATPFTDVTVEA--------VSKLLRSHGFQSRGFEVMYHGHTGRKLV-------- 1071
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ H+ +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1072 ------AQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125
Query: 338 CLIAHGASGNLHERL-KCKNVANVIQRVVGGPY-----------CRICNSADDIIKANVP 385
C I+HG S L ERL C + VI + G CR C + + +P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y AKLL QEL SM I + T+
Sbjct: 1186 YAAKLLFQEL-MSMNIAPRLFTK 1207
>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
Length = 1220
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 742 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 798
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRS--------- 92
L I+ C EDS++MNQ+S++ G+FRS
Sbjct: 799 LGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 858
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
ES++ +++K + DD L ++ D++IGK I D
Sbjct: 859 EKRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDA 918
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 919 EELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT----KVPQIGD 974
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 975 KFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1034
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I S+LL G ++ G ++ + L
Sbjct: 1035 GNEGDASPFTDITVDGI--------SRLLREHGYQSRGFEVMYNGHTGKKLM-------- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1079 ------AQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1132
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A V+ ++ + CR C + DI + ++
Sbjct: 1133 CMIAHGAAAFLKERLMEASDAFRVHICGVCGLMTVVAKLKHNQFECRGCKNKIDIYQIHI 1192
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I + T S
Sbjct: 1193 PYAAKLLFQEL-MAMNIAPRLYTDRS 1217
>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
Length = 1185
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 151/512 (29%), Positives = 220/512 (42%), Gaps = 136/512 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN----TYQS-AMGKQAMGIYATNYQVRIDTLAHVLYYPQ 755
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL D L EDSL+M+Q+S++ G+FRS Y++
Sbjct: 756 KPLVKTHSMDYLKFRELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFRSMFYRSYT 815
Query: 100 DNKDIQ------------------VKSRPSDDMLN-----FGKIQSKSGDIVIGK----- 131
D + + SR + D L+ F + DI+IGK
Sbjct: 816 DEQKTEGVLCLEQFEKPQREELGSASSRVNYDKLDVDGLVFPAQNVEDRDIIIGKTTLVT 875
Query: 132 ------YAEIGA--DHSIKLKHTERGLVLKVLLSSNDD-GKNFAVVSIRQSVNMVHSACL 182
A+I D S +L+H E G+V +VLL++N D G+ F + +R V +
Sbjct: 876 NSDDSDQAQIAVKRDSSTRLRHNEHGVVDQVLLTTNSDTGQRFVQIKVR----AVRVPQI 931
Query: 183 GDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC 216
GDKF+S HGQKG +G T L+E LGK C
Sbjct: 932 GDKFASRHGQKGTVGITYRQDDMPFTSEGVSPDLIVNPHAIPSRMTIGHLIETLLGKVGC 991
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF E + VS +L+ G + G ++ + L
Sbjct: 992 LTGDEGDATPF--------NEVNVKDVSDMLHSRGYQRHGNERLYNGHTGRPLT------ 1037
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+L+F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+
Sbjct: 1038 --------ALVFFGPTYYQRLKHMVDDKIHSRARGPTQMLNRQPMEGRARDGGLRFGEME 1089
Query: 336 CDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRIC-NSADDI 379
DC+IAHG++ L E+L C++ +AN+ + P C NS+ +
Sbjct: 1090 RDCMIAHGSANVLREKLFTQSDGYMTHICQDCGLIAIANLDSNLYRCPNQATCRNSSIGM 1149
Query: 380 IKANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
I+ +PY AKLL QEL +M I + T L G
Sbjct: 1150 IE--IPYAAKLLFQEL-MAMQIAPRLMTSLPG 1178
>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
hirsutum FP-91666 SS1]
Length = 1230
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 218/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 750 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKP 806
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 807 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 866
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 867 EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDS 926
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 927 EELGQRTRIHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFVKVRVRAT----RIPQIGD 982
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 983 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLI 1042
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ L G ++ G+ ++ + L
Sbjct: 1043 GNEGDATPF--------TDLTVESVSQFLRAQGYQSRGLEVMYHGHTGRKL--------- 1085
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1086 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1140
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ERL +AN+ ++ CR C + +
Sbjct: 1141 CMISHGVAGFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFE---CRACKNKTACSQI 1197
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
++PY AKLL QEL SM I + T +G
Sbjct: 1198 HIPYAAKLLFQELQ-SMNIAARLYTTSTG 1225
>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
ARSEF 2860]
Length = 1261
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 222/513 (43%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P +D + ++ DI+IGK A
Sbjct: 898 EKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPET 957
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
++GA D S L+ TE G+V +V+++ N D + V +R + +GD
Sbjct: 958 QDLGARTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTT----KIPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSDLLRKHGYQSRGFEIMYNGHTGKKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSF---ECRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTDRSGASI 1260
>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 137/474 (28%), Positives = 206/474 (43%), Gaps = 95/474 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 696 SMILGVCGSIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 752
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 753 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 812
Query: 99 VDNKDIQVK---SRPS----------------DDMLNFGKIQSKSGDIVIGKYA-----E 134
VK RP+ DD + + D++IGK E
Sbjct: 813 EKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLVQDE 872
Query: 135 IGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
G D S L+H+E G++ +VLL++N DG F ++ V + +GDKF
Sbjct: 873 TGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRF----VKTRVRSIRIPQIGDKF 928
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 246
SS HGQKG +G T Q +G ++ P A + I + + + ++
Sbjct: 929 SSRHGQKGTIGM---TYTQEDMPFTQEGITPDII--VNPHAIPSRMTIGQLIECIMGKVA 983
Query: 247 NCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQF 296
+G F + L +C F + + ++IF T+YQ+
Sbjct: 984 ALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTYYQRL 1043
Query: 297 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---- 352
HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 1044 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQS 1103
Query: 353 ------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
C++ +AN+ + CR C + +I++ ++PY KLL QEL
Sbjct: 1104 DAYRVHVCEHCGLIAIANLKKNTFE---CRSCKNKTEIVQVHIPYACKLLFQEL 1154
>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 135/474 (28%), Positives = 205/474 (43%), Gaps = 95/474 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 696 SMILGVCGSIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 752
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 753 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 812
Query: 99 VDNKDIQVK---SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
VK RP+ DD + + D++IGK +
Sbjct: 813 EKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLAQDE 872
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D S L+H+E G++ +VLL++N DG F ++ V + +GDKF
Sbjct: 873 TGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRF----VKTRVRSIRIPQIGDKF 928
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 246
SS HGQKG +G T Q +G ++ P A + I + + + ++
Sbjct: 929 SSRHGQKGTIGM---TYTQEDMPFTQEGITPDII--VNPHAIPSRMTIGQLIECIMGKVA 983
Query: 247 NCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQF 296
+G F + L +C F + + ++IF T+YQ+
Sbjct: 984 ALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTYYQRL 1043
Query: 297 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---- 352
HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 1044 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQS 1103
Query: 353 ------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
C++ +AN+ + CR C + +I++ ++PY KLL QEL
Sbjct: 1104 DAYRVHVCEHCGLIAIANLKKNTFE---CRSCKNKTEIVQVHIPYACKLLFQEL 1154
>gi|15679063|ref|NP_276180.1| DNA-directed RNA polymerase subunit B' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122768|sp|O27124.1|RPOB1_METTH RecName: Full=DNA-directed RNA polymerase subunit B'
gi|2622149|gb|AAB85541.1| DNA-dependent RNA polymerase, subunit B' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 603
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N ++R DT L +
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYASNYDLRTDTRAHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ P+ I D G RP ED+L++N+ASLE G+ RS S
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 95 YKA-------------EVDNKDIQVKSRPSD------DMLNFGKIQSKSGDIVIGK---- 131
Y+A E+ K ++ SD D + + + SGD++IGK
Sbjct: 242 YEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPP 301
Query: 132 -----------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
AE + S+ ++H E+G+V VLL+ +G A + +R+
Sbjct: 302 RFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQ----RQP 357
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKG 214
LGDKF+S HGQKGV+G + E P Q+LE GK
Sbjct: 358 ELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKA 417
Query: 215 AC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
AC +G TPF T + + + + L G +G+ ++
Sbjct: 418 ACMEGRRVDGTPF--------TGEDEDDIKEALRANGFETAGVESLYNGITGE------- 462
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + IF + +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FGE
Sbjct: 463 -------RIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGE 515
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDII 380
M+ DCLIAHGA+ L ERL C +A V ++ YC IC ++
Sbjct: 516 MERDCLIAHGAALALKERLLDESDKYEALVCADCGMIA-VYDKIRDKKYCPICEDSES-F 573
Query: 381 KANVPYGAKLLSQEL 395
V Y KLL EL
Sbjct: 574 PVEVSYAFKLLLDEL 588
>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
Length = 670
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 213/501 (42%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 192 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYILYYPQKP 248
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G RS Y++ D
Sbjct: 249 LVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHRSIFYRSYRDE 308
Query: 102 KDIQVK------SRPSDDMLN------FGKIQSKS----------GDIVIGKYAEI---- 135
+ Q +P+ D+ + + K+ S D++IGK +
Sbjct: 309 EKKQGTLTKEEFEKPNRDITSGMRHGSYDKLDSDGIAPPGTRVAGEDVIIGKTMPLPQDD 368
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D S L+H+E G++ +V+L+ N+DG F + +R + +GDKF
Sbjct: 369 SGTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDGFRFVKIRVRS----IRIPQIGDKF 424
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGL 219
+S HGQKG +G E P L+E +GK A G
Sbjct: 425 ASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIPSRMTIGHLIECLMGKVAALMGK 484
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 485 EGDATPFTDVTVDSI--------SRALHSCGYQMRGFEVMYNGHTGRKL----------- 525
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++ IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 526 ---QAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 582
Query: 340 IAHGASGNLHERL----------KCKNVANVIQRVVGGPY--CRICNSADDIIKANVPYG 387
IAHGA+ L ERL C++ + + + CR C + DI++ ++PY
Sbjct: 583 IAHGAAHFLKERLFDQSDAYRVHVCEHCGLIANANLKKSFFECRGCKNKTDIVQVHIPYA 642
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 643 CKLLFQEL-MSMAIAPRMMTR 662
>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
Length = 1261
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 219/513 (42%), Gaps = 133/513 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 781 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 837
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 838 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P +D + ++ DI+IGK A I
Sbjct: 898 EKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPET 957
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V +V+++ N D + V +R + +GD
Sbjct: 958 QDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTT----KIPQIGD 1013
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLE 1073
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1074 GMEGDATPFTDVT--------VDSVSDLLRKHGYQSRGFEIMYNGHTGKKL--------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1117 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 1171
Query: 338 CLIAHGASGNLHERL----------KCK------NVANVIQRVVGGPYCRICNSADDIIK 381
C+IAHGA+ L ERL C+ +AN+ ++ CR C + I +
Sbjct: 1172 CMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFE---CRPCKNKTKIAQ 1228
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
++PY AKLL QEL SM I + T SG S+
Sbjct: 1229 IHIPYAAKLLFQELQ-SMNIAARMFTDRSGASI 1260
>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
hordei]
Length = 1241
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 217/503 (43%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ I+P + + +YQS QAIG P +N R D++ L+YPQ+P
Sbjct: 771 AMVLGICASIVPFPDHNQSPRN--VYQSAM-GKQAIGIPISNFISRADSMNHILYYPQKP 827
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV-D 100
L + L EDS++MNQ+S++ G+FRS Y+ + +
Sbjct: 828 LGTTRSMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRGYMAE 887
Query: 101 NKDIQVK-----SRPSDDML------NFGKIQSK---------SGD-IVIGKYA------ 133
K + V +P D + KI + SGD ++IGK A
Sbjct: 888 EKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVIIGKTAPLPPDS 947
Query: 134 -EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D SI LK TE G++ +VLL++N G F V +R S GD
Sbjct: 948 EELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNS----RVPQTGD 1003
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 1004 KFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAALS 1063
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS +L +G ++ G+ ++ + L
Sbjct: 1064 GQEGDATPF--------TELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKL--------- 1106
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1107 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERD 1161
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHG +G L ER+ +AN+ + G CR C + I +
Sbjct: 1162 CMIAHGIAGFLKERMFDASDPYRIHVCDLCGLTALANLKK---GTYECRSCRNRTAISQI 1218
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
++PY AKLL QEL S+ + L+
Sbjct: 1219 HIPYAAKLLMQEL-MSVNVALRL 1240
>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
20631-21]
Length = 1272
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 216/510 (42%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R+DT+ L+YPQ+P
Sbjct: 792 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMDTMANILYYPQKP 848
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 849 LAITRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYHDQ 908
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 909 EKRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPLPPDA 968
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 969 EELGQRTKSHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT----KIPQIGD 1024
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 1025 KFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVASLI 1084
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS L +G ++ G ++ + L
Sbjct: 1085 GKEGDATPFTDVT--------VDSVSSRLRDMGYQSRGFEVMYHGHTGRKLV-------- 1128
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1129 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1182
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+I+HGAS L ERL C + + + CR C + I + ++
Sbjct: 1183 CMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIAKLNTQSFECRPCRNKTKISQVHI 1242
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY KLL QEL+ SM I + T SGVS+
Sbjct: 1243 PYATKLLFQELA-SMNIAARMFTNRSGVSV 1271
>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
WM276]
Length = 1193
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 142/496 (28%), Positives = 213/496 (42%), Gaps = 134/496 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT++ L+YPQ+P
Sbjct: 716 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVCLTNYQLRMDTMVNVLYYPQKP 772
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 773 LATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDT 832
Query: 101 -----------------NKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYA--- 133
N+ +++K SD D L DI+IGK A
Sbjct: 833 EKMKGMVKAETIEKPDRNETLRMKHGTSDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLP 892
Query: 134 ----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S LK TE+G+V +V+LS+N +G F + +R +
Sbjct: 893 EDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRST----RVPQ 948
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P L+E L K
Sbjct: 949 IGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVS 1008
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS++L G ++ G ++ + L
Sbjct: 1009 TLTGAEGDATPF--------TELTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKL------ 1054
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1055 --------QAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1106
Query: 335 KCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDI 379
+ DC+I+HG +G L ER+ + VAN+ ++ YC +C ++ I
Sbjct: 1107 ERDCMISHGIAGFLKERMYDSSDAFRIHVCDICGLMAVANLKKQEF---YCSVCRNSTQI 1163
Query: 380 IKANVPYGAKLLSQEL 395
+ +PY AKLL QEL
Sbjct: 1164 SQVYIPYAAKLLFQEL 1179
>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
edodes]
Length = 1228
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 148/509 (29%), Positives = 219/509 (43%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DT+ L+YPQ+P
Sbjct: 749 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLIRMDTMANILYYPQKP 805
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 806 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 865
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 866 EKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDS 925
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F + +R + +GD
Sbjct: 926 EELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRST----RIPQIGD 981
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 982 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLI 1041
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ +F + L
Sbjct: 1042 GNEGDATPF--------TDLTVESVSMFLKQKGYQSRGLEVMFHGHTGRKL--------- 1084
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1085 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1139
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ERL C+ +AN+ ++ CR C + + +
Sbjct: 1140 CMISHGIAGFLKERLFEASDAYRVHVCEICGLTAIANLKKQSF---ECRACKNKTAVSQL 1196
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T SG
Sbjct: 1197 YIPYAAKLLFQELQ-SMNIAARLYTVSSG 1224
>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
Length = 629
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 183/434 (42%), Gaps = 112/434 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 193 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 249
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+AE
Sbjct: 250 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRAE 309
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 310 XKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDE 369
Query: 139 -------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
HS L+H+E G+V +VLL++N DG F V +R V +GDK
Sbjct: 370 AQGQANARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDK 425
Query: 186 FSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-G 218
FSS HGQKG +G E P QL+E +GK A G
Sbjct: 426 FSSRHGQKGTVGMTYTQEDMPWTLEGINPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMG 485
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF T +S+ L+ G + G ++ + L
Sbjct: 486 KEGDATPFTDVT--------VDNISKALHKCGYQMRGYETMYNGHTGRKL---------- 527
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC
Sbjct: 528 ----TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 583
Query: 339 LIAHGASGNLHERL 352
+IAHGA+ L ERL
Sbjct: 584 MIAHGAAHFLKERL 597
>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
Length = 1207
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 215/493 (43%), Gaps = 119/493 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP Q + + YQS QA+G TN N+R+D L L+YPQ+P
Sbjct: 740 SMILGVCASIIPFPDQNQSPRN--TYQS-AMGKQAMGVYATNFNLRMDPLSHLLYYPQKP 796
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MNQ+S++ G+FRS +Y +E
Sbjct: 797 LVCTRSMEFLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYVSE 856
Query: 99 ---VDNKDIQVKSRPSD---------DMLNF---GKIQSKS----GDIVIGKYA------ 133
V + ++ RP+ D G +Q S D++IG+ +
Sbjct: 857 EKHVGSTVVERFERPNPATCVGLKRGDYTKLDADGLVQPGSRVLGDDVIIGRTSACNDEE 916
Query: 134 --EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHG 191
+ D S L+ +E G+V VL+SSN G FA V +R + +GDKF+S HG
Sbjct: 917 DENLRQDCSCCLRTSENGVVDTVLISSNAKGSRFAKVKVRS----IRVPQIGDKFASRHG 972
Query: 192 QKGVLGFLEQTP--------------------------AQLLEAALGK-GACDGLMSYAT 224
QKG +G +T L+E +GK GAC G+ AT
Sbjct: 973 QKGTIGMTYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGACCGMEGDAT 1032
Query: 225 PFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRS 284
PF+ +T QH +L C ++ + L C F M + S
Sbjct: 1033 PFSK-----LTVQH--VAERLFECGYGKHG-------NEALHCGFTGEM--------IVS 1070
Query: 285 LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 344
IF T+YQ+ HM EDK+ R G LT +P R R GG+ FGEM+ DC+I+HGA
Sbjct: 1071 KIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGA 1130
Query: 345 SGNLHERLKCKNVA---NVIQRV---------VGGPYCRICNSADDIIKANVPYGAKLLS 392
+ L ERL ++ A +V R C C++ +I + +PY KLL
Sbjct: 1131 AKMLKERLFDQSDAFRIHVCDRCGLCCVADLNRNNFECTACDNKTNISQVTIPYACKLLI 1190
Query: 393 QELSFSMGITLKF 405
QEL +M I K
Sbjct: 1191 QEL-MAMAIYPKL 1202
>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
98AG31]
Length = 1257
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 211/503 (41%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 772 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNFRMRMDTMANILYYPQKP 828
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 829 LATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQ 888
Query: 102 K---------DIQVKSRPSDDMLNFGKIQS-------------KSGDIVIGKYAEIGADH 139
+ + + SR + L G + DI+IGK A I D
Sbjct: 889 EKKAGALQMEEFEKPSRENTLRLKHGTYEKLDDDGIITPGTRVSGDDIIIGKTAPIPPDS 948
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S+ LK TE G++ +VL+++N DG F V IR + GD
Sbjct: 949 EELGQRMKTHTKRDVSMPLKSTENGIIDQVLITTNQDGLKFVKVRIRST----RIPETGD 1004
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G L E P L+E L K
Sbjct: 1005 KFASRHGQKGTVGILYRQEDMPFTSEGICPDIIINPHAIPSRMTIGHLVECLLSKVSTIT 1064
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF+ T I S LL G ++ G+ ++ + L
Sbjct: 1065 GNEGDATPFSEVTVEAI--------SSLLKDNGYQSRGLEIMYNGHTGRKL--------- 1107
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ + T+YQ+ HM DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1108 -----RAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1162
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ER+ C +AN+ ++ CR C + I +
Sbjct: 1163 CMISHGIAGFLKERMFDVSDAYRVHVCDICGMVAIANLKKQSF---ECRACRNKTAISQV 1219
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +F
Sbjct: 1220 YIPYAAKLLFQELQ-SMNIASRF 1241
>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
delicata TFB-10046 SS5]
Length = 1217
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 218/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R DT+ L+YPQ+P
Sbjct: 738 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFQVRQDTMANILYYPQKP 794
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 795 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDV 854
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYA------ 133
+ +++K D + + G I +G DI+IGK A
Sbjct: 855 EKKSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDS 914
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S LK TE G+V +VL+++N DG+ F + IR + +GD
Sbjct: 915 EELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRST----RVPQIGD 970
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 971 KFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATMI 1030
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ+L G + G+ ++ + L
Sbjct: 1031 GNEGDATPF--------TDLTVESVSQVLRQRGYHSRGLEVMYHGHTGRKL--------- 1073
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1074 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1128
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + + +
Sbjct: 1129 CMISHGLAAFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFE---CRACKNKVAVSQL 1185
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1186 YIPYAAKLLIQELQ-SMNIAARLYTVSTG 1213
>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
T-34]
Length = 1240
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 217/503 (43%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ LG+ I+P + + +YQS QAIG P +N R D++ L+YPQ+P
Sbjct: 770 AMTLGICASIVPFPDHNQSPRN--VYQSAM-GKQAIGVPISNILSRADSMAHVLYYPQKP 826
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV-D 100
L I+ C EDS++MNQ+S++ G RS Y+ + +
Sbjct: 827 LGTTRSMEHIRFRELPAGQNSIVAIMCYSGYNQEDSVIMNQSSIDRGFMRSLYYRGYMAE 886
Query: 101 NKDIQVK-----SRPSDDML------NFGKIQSK---------SGD-IVIGKYA------ 133
K + V +P D + KI + SGD ++IGK A
Sbjct: 887 EKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLVAPGTRVSGDDVIIGKTAPLPPDS 946
Query: 134 -EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D SI LK TE G++ +VLL++N +G F V +R S GD
Sbjct: 947 EELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSNGNKFVKVRVRNS----RVPQTGD 1002
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + E P L+E L K A
Sbjct: 1003 KFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHAIPSRMTIGHLVECLLSKVAALS 1062
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS +L +G ++ G+ ++ + +
Sbjct: 1063 GQEGDATPF--------TELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKM--------- 1105
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1106 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERD 1160
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHG +G L ER+ +AN+ + G CR C + I +
Sbjct: 1161 CMIAHGIAGFLKERMFDVSDPYRIHVCDLCGLTALANLKK---GTYECRSCRNRTAISQI 1217
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
++PY AKLL QEL S+ + L+
Sbjct: 1218 HIPYAAKLLMQELQ-SVNVALRL 1239
>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1198
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 216/490 (44%), Gaps = 129/490 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G T+N +R+DTL L+YPQ+P
Sbjct: 727 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTSNYQMRMDTLAHVLYYPQKP 783
Query: 62 LF-------------------WILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I I+ G EDS+++NQ++++ G FRS ++ D
Sbjct: 784 LVCTKSMEFLHFKELSSGLNASIAIACYTGYNQEDSIMLNQSAIDRGFFRSVFFRTYDDC 843
Query: 101 NKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEIGA------ 137
+K+ +V + P D ++ G + S DI++GK A++ +
Sbjct: 844 SKEGEVFAIPDFAKTSGRKHGDYDKLDIDGLICPGVLVS-GDDIIVGKVAKMTSNTFNED 902
Query: 138 ----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D S LKH+E G++ +V+L++ND+ + F V +R V +GDKF+
Sbjct: 903 LRDSTAKKFKDCSTPLKHSESGIIDQVILTTNDEAQKFTKVKMR----AVRIPQIGDKFA 958
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DGLM 220
S HGQKG G T L+E L K A +G
Sbjct: 959 SRHGQKGTCGMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTIGHLIECLLSKVASLNGSE 1018
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF Q+ +SQLL+ +G + G ++ + F FE
Sbjct: 1019 GDATPFCG--------QNVDEISQLLHELGYQRYGNEVMY-NGFTGRKFEV--------- 1060
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
LIF TFYQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DC+I
Sbjct: 1061 ----LIFLGPTFYQRLKHMVGDKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMI 1116
Query: 341 AHGASGNLHERL----KCKNV-----------ANVIQRVVGGPYCRICNSADDIIKANVP 385
+HGA+ L ERL C V AN+ ++ C CN+ +I + +P
Sbjct: 1117 SHGAARFLKERLFDVSDCYRVHICQTCGLICQANLAEQRYE---CNNCNNTSNICQVKIP 1173
Query: 386 YGAKLLSQEL 395
Y AKLL QEL
Sbjct: 1174 YAAKLLIQEL 1183
>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
var. grubii H99]
Length = 1245
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 214/496 (43%), Gaps = 134/496 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT++ L+YPQ+P
Sbjct: 768 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVCLTNYQLRMDTMVNVLYYPQKP 824
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 825 LATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDT 884
Query: 102 KDIQ--VKSRPSDDMLNFGKIQSKSG-----------------------DIVIGKYA--- 133
+ ++ VK+ + ++ K G DI+IGK A
Sbjct: 885 EKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLP 944
Query: 134 ----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S LK TE+G+V +V+LS+N +G F + +R +
Sbjct: 945 EDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRST----RVPQ 1000
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P L+E L K
Sbjct: 1001 IGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVS 1060
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS++L G ++ G ++ + L
Sbjct: 1061 TLTGAEGDATPF--------TELTVEAVSKVLRAKGYQSRGFELLYHGHTGRKL------ 1106
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1107 --------QAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1158
Query: 335 KCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDI 379
+ DC+I+HG +G L ER+ + VAN+ ++ YC +C ++ I
Sbjct: 1159 ERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEF---YCSVCRNSTQI 1215
Query: 380 IKANVPYGAKLLSQEL 395
+ +PY AKLL QEL
Sbjct: 1216 SQVYIPYAAKLLFQEL 1231
>gi|304315185|ref|YP_003850332.1| DNA-directed RNA polymerase, subunit B' [Methanothermobacter
marburgensis str. Marburg]
gi|302588644|gb|ADL59019.1| DNA-directed RNA polymerase, subunit B' [Methanothermobacter
marburgensis str. Marburg]
Length = 603
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 142/496 (28%), Positives = 215/496 (43%), Gaps = 138/496 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N ++R DT L +
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYASNYDLRTDTRAHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ P+ I D G RP ED+L++N+ASLE G+ RS S
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 95 YKA-------------EVDNKDIQ-------VKSRPSDDMLNFGKIQSKSGDIVIGK--- 131
Y+A E+ K ++ + D ++N + S SGD++IGK
Sbjct: 242 YEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAVVS-SGDVLIGKTSP 300
Query: 132 ------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
AE + S+ ++H E+G+V VLL+ +G A + +R+
Sbjct: 301 PRFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQ----RQ 356
Query: 180 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 213
LGDKF+S HGQKGV+G + E P Q+LE GK
Sbjct: 357 PELGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGK 416
Query: 214 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
AC +G TPF T + + + + L G ++G+ ++
Sbjct: 417 AACMEGRRVDGTPF--------TGEDERDIKKALRANGFESAGVESLY------------ 456
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ I + + IF + +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FG
Sbjct: 457 -NGITG-ERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFG 514
Query: 333 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 379
EM+ DCLIAHGA+ L ERL +C +A + ++ YC IC ++
Sbjct: 515 EMERDCLIAHGAALALKERLLDESDKYEALVCTECGMIA-IYDKIRDKKYCPICEDSES- 572
Query: 380 IKANVPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 573 FPVEISYAFKLLLDEL 588
>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
Length = 1177
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 148/503 (29%), Positives = 223/503 (44%), Gaps = 124/503 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + +YQS QA+G T+N N+R+DTL L+YPQ+P
Sbjct: 705 SLILGVCASIIPFPDHNQSPRN--VYQS-AMGKQAMGVYTSNYNVRMDTLGYVLYYPQKP 761
Query: 62 L----------FWILIS--DCL--------GRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L + +C+ EDSL+MNQ+S++ G+FRS ++ V
Sbjct: 762 LVTTRAMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSE 821
Query: 102 KD------IQVKSRPSDDML------NFGKI----------QSKSGDIVIGKYAEIGA-- 137
+ I+ P+ + + N+G + + DI+IGK I
Sbjct: 822 EKQVGSNLIEAFELPNPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIIIGKVGPINPED 881
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D S+ ++ +E G+V +VLLS+N G FA V +R ++ + H +GDKF
Sbjct: 882 RDTRIQKLTKRDCSVGIRTSEHGVVDEVLLSTNSKGVKFAKVKVR-TIRIPH---VGDKF 937
Query: 187 SSMHGQKGVLGFLEQTP--------------------------AQLLEAALGKG-ACDGL 219
+S HGQKG +G +T L+E LGK A GL
Sbjct: 938 ASRHGQKGTIGITYRTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIECLLGKACAIQGL 997
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T + E +S L+ G + +G ++ + L
Sbjct: 998 EGDATPFTKIT---VEE-----ISSRLHSSGFQKNGNEVMYNGHTGKRL----------- 1038
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
S IF T+YQ+ HM +DK+ R G+ LT +P R R GG+ FGEM+ DC+
Sbjct: 1039 ---ESRIFIGPTYYQRLKHMVDDKIHARARGAVTMLTRQPREGRAREGGLRFGEMERDCM 1095
Query: 340 IAHGASGNLHERL----------KCKNVANVIQRVVGGPY--CRICNSADDIIKANVPYG 387
I+HGA+ L ERL C+ + +G + C CN+ I + +PY
Sbjct: 1096 ISHGAAKMLKERLFDQCDAYRVHVCEMCGLICIADLGKQHFECNACNNKSRISQICLPYA 1155
Query: 388 AKLLSQELSFSMGITLKFDTQLS 410
KLL QEL +M I + Q +
Sbjct: 1156 CKLLLQEL-MAMSIYPRLHLQTA 1177
>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1131
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 148/509 (29%), Positives = 214/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN R+DT+ L+YPQ+P
Sbjct: 646 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNFRTRMDTMANILYYPQKP 702
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 703 LATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQ 762
Query: 102 ---------KDIQVKSRPS-------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
++ + +R S DD + + DI+IGK A I D
Sbjct: 763 EKRAGALQMEEFEKPTRDSTLRLKHGTYDKLDDDGIITPGTRVSGDDIIIGKTAPIPKDS 822
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S+ LK TE G++ +VL+++N DG F V IR + GD
Sbjct: 823 EELGQRMKTHTKRDVSMPLKSTENGIIDQVLVTTNQDGLKFVKVRIRST----RIPETGD 878
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G L E P L+E L K
Sbjct: 879 KFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSKVSTIT 938
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF+ T I S LL G ++ G+ +F + L
Sbjct: 939 GNEGDATPFSEVTVEAI--------SALLKDKGYQSRGLEIMFNGHTGKKL--------- 981
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ + T+YQ+ HM DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 982 -----RAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1036
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ER+ C +AN+ ++ CR C + I +
Sbjct: 1037 CMISHGIAGFLKERMFDVSDAYRVHVCDFCGMVAIANLKKQSF---ECRSCRNKTAISQV 1093
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I +F + +G
Sbjct: 1094 YIPYAAKLLFQELQ-SMNIASRFVFESAG 1121
>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 1169
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 144/503 (28%), Positives = 212/503 (42%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ C IIP + + YQ+ QA+G TN +R+DT+ LFYPQ+P
Sbjct: 699 SMILGVCCSIIPFPDHNQSPRN--TYQA-AMGKQAMGVYITNYQLRMDTMAHVLFYPQKP 755
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++NQ++++ G+FRS Y+A D
Sbjct: 756 LVTTRSMEYLHFRELPAGQNACVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE 815
Query: 102 KDIQVK------SRPSDDML------NFGKIQSK----------SGDIVIGKYAEIGA-- 137
+ Q +P D ++ KI DI+IGK +
Sbjct: 816 QKKQTSLMEEQFEKPDRDTCAGMRHGSYEKIDEDGLVAPGVRVAGDDIIIGKTTPLPPQE 875
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+L+++ +G F V +R + +GD
Sbjct: 876 DDLGPKTRRHTKRDSSTALRSSENGIVDQVILTTSGEGFKFCKVRVRS----MRVPQIGD 931
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKG G T QL+E LGK A
Sbjct: 932 KFSSRHGQKGTCGMAYRQEDLPWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLGKVSAST 991
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L+ +G + +G ++ + MD
Sbjct: 992 GDEGDATPFTDVTVEAI--------SQALHKVGYQMTGHEVMYNGH-----TGRRMD--- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R+ G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1036 ------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERD 1089
Query: 338 CLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG++ L ERL ++ +AN+ + CR C + I +
Sbjct: 1090 CMISHGSAAFLRERLFDQSDHYRVHVCDICGLIAIANLKKNSFE---CRRCKNKTQISQV 1146
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1147 RMPYAAKLLFQEL-MSMSIAPRM 1168
>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1193
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/496 (28%), Positives = 214/496 (43%), Gaps = 134/496 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DT++ L+YPQ+P
Sbjct: 716 SMILGVCASIVPFPDHNQSPRN--TYQS-AMGKQAMGVCLTNYQLRMDTMVNVLYYPQKP 772
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 773 LATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDT 832
Query: 102 KDIQ--VKSRPSDDMLNFGKIQSKSG-----------------------DIVIGKYA--- 133
+ ++ VK+ + ++ K G DI+IGK A
Sbjct: 833 EKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLP 892
Query: 134 ----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S LK TE+G+V +V+LS+N +G F + +R +
Sbjct: 893 EDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRST----RVPQ 948
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P L+E L K
Sbjct: 949 IGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVS 1008
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS++L G ++ G ++ + L
Sbjct: 1009 TLTGAEGDATPF--------TELTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKL------ 1054
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1055 --------QAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1106
Query: 335 KCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDI 379
+ DC+I+HG +G L ER+ + VAN+ ++ YC +C ++ I
Sbjct: 1107 ERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEF---YCSVCRNSTQI 1163
Query: 380 IKANVPYGAKLLSQEL 395
+ +PY AKLL QEL
Sbjct: 1164 SQVYIPYAAKLLFQEL 1179
>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1245
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/496 (28%), Positives = 214/496 (43%), Gaps = 134/496 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DT++ L+YPQ+P
Sbjct: 768 SMILGVCASIVPFPDHNQSPRN--TYQSAM-GKQAMGVCLTNYQLRMDTMVNVLYYPQKP 824
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 825 LATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDT 884
Query: 102 KDIQ--VKSRPSDDMLNFGKIQSKSG-----------------------DIVIGKYA--- 133
+ ++ VK+ + ++ K G DI+IGK A
Sbjct: 885 EKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLP 944
Query: 134 ----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S LK TE+G+V +V+LS+N +G F + +R +
Sbjct: 945 EDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRST----RVPQ 1000
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P L+E L K
Sbjct: 1001 IGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVS 1060
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS++L G ++ G ++ + L
Sbjct: 1061 TLTGAEGDATPF--------TELTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKL------ 1106
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1107 --------QAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1158
Query: 335 KCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDI 379
+ DC+I+HG +G L ER+ + VAN+ ++ YC +C ++ I
Sbjct: 1159 ERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEF---YCSVCRNSTQI 1215
Query: 380 IKANVPYGAKLLSQEL 395
+ +PY AKLL QEL
Sbjct: 1216 SQVYIPYAAKLLFQEL 1231
>gi|133460|sp|P09845.2|RPOB1_METTW RecName: Full=DNA-directed RNA polymerase subunit B'
gi|809726|emb|CAA30837.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 604
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/496 (28%), Positives = 214/496 (43%), Gaps = 137/496 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N N+R DT L +
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYASNYNLRTDTRAHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ P+ I D G RP ED+L++N+ASLE G+ RS S
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 95 YKA-------------EVDNKDIQ-------VKSRPSDDMLNFGKIQSKSGDIVIGK--- 131
Y+A E+ K ++ + D ++N + + SGD++IGK
Sbjct: 242 YEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIIN-PETEVSSGDVLIGKTSP 300
Query: 132 ------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
AE + S+ ++H E G+V VLL+ +G A + +R+
Sbjct: 301 PRFLEEIDEFGTVAERRRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQR---QP 357
Query: 180 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 213
+GDKF+S HGQKGV+G + E P Q+LE GK
Sbjct: 358 EFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGK 417
Query: 214 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
AC +G TPF T + + + + L G ++G+ ++
Sbjct: 418 AACMEGRRVDGTPF--------TGEEEKDLKEALKANGFESAGVETLY------------ 457
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ I + + IF + +YQ+ HM+ D++ R+ G Q LT +P R R GG+ FG
Sbjct: 458 -NGITG-ERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFG 515
Query: 333 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 379
EM+ DCLIAHGA+ L ERL +C +A + ++ YC IC ++
Sbjct: 516 EMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIA-IYDKIRDKKYCPICEDSES- 573
Query: 380 IKANVPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 574 FPVEISYAFKLLLDEL 589
>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1220
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 148/509 (29%), Positives = 217/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS + QA+G TN IR+DT+ L+YPQ+P
Sbjct: 741 SMILGICASIIPFPDHNQSPRN--TYQS-AMAKQAMGIYLTNFLIRMDTMANILYYPQKP 797
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 798 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 857
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 858 EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDS 917
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 918 EELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRAT----RIPQIGD 973
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 974 KFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLI 1033
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 1034 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL--------- 1076
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1077 -----QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1131
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ERL +AN+ ++ CR C + +
Sbjct: 1132 CMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRSCKNKTACSQI 1188
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T SG
Sbjct: 1189 YIPYAAKLLFQELQ-SMNIAARLYTVSSG 1216
>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
B]
Length = 1242
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 217/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 763 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 819
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 820 LATTRSMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 879
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+++K D + + G I +G DI+IGK A I D
Sbjct: 880 EKKSGVQQLEEFEKPSRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDS 939
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G++ +VL+++N +G+ F + +R + GD
Sbjct: 940 EELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRST----RIPQTGD 995
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 996 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLI 1055
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ+L G ++ G+ ++ + L
Sbjct: 1056 GNEGDATPF--------TDLTVESVSQVLRQKGYQSRGLEVMYHGHTGRKL--------- 1098
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1099 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1153
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ +++ CR C + I +
Sbjct: 1154 CMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQMFE---CRSCKNKTAISQL 1210
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1211 YIPYAAKLLFQELQ-SMNIAARLYTTSTG 1238
>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1565
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 197/460 (42%), Gaps = 128/460 (27%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QA+G TN +R+DT+ LFYPQ+PL + L
Sbjct: 1124 QAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQ 1183
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDNKDIQVK------SRPSDDML------NFGKIQS 122
EDS+++NQ++++ G+FRS Y++ D + Q +P D ++ KI
Sbjct: 1184 EDSVILNQSAIDRGMFRSMFYRSYKDEQKKQTSLMEETFEKPDRDTTVGMRHGSYEKIDE 1243
Query: 123 KS----------GDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLS 157
DI+IGK E+G D S ++ +E G+V +V+L+
Sbjct: 1244 DGLVAPGIRVTGDDIIIGKTTPLPPQEDELGPKTRRQSKKDSSTAMRSSENGVVDQVVLT 1303
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------ 199
++ DG F V +R + + +GDKFSS HGQKG G
Sbjct: 1304 TSGDGLKFTKVRVRS----MRTPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGVVPDII 1359
Query: 200 --------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 250
T QL+E LGK A G ATPF T I SQ L+ IG
Sbjct: 1360 VNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAI--------SQALHKIG 1411
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
+ +G ++ + MD + IF T+YQ+ HM +DK+ R+ G
Sbjct: 1412 YQMTGHEVMYNGHT-----GRRMD---------AQIFIGPTYYQRLKHMVDDKIHSRSRG 1457
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN-------------- 356
Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L ERL ++
Sbjct: 1458 PVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLI 1517
Query: 357 -VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
+AN+ + CR C + I + +PY AKLL QEL
Sbjct: 1518 AIANLRKNSFE---CRRCKNKTQISQVKIPYAAKLLFQEL 1554
>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 148/506 (29%), Positives = 217/506 (42%), Gaps = 133/506 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N IR+DTL L+YPQ+P
Sbjct: 725 SMILGVCASIIPFPDHNQSPRN--CYQSAM-GKQAMGVYCSNYQIRMDTLAHVLYYPQKP 781
Query: 62 LFWILISDCLGRPE-----------------------DSLVMNQASLECGVFRSESYK-- 96
L +++ L P DS++M+QA ++ G FRS YK
Sbjct: 782 L---VVARSLDFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRGCFRSVFYKNI 838
Query: 97 ----AEVDN----KDIQVKSRPSDDM-------LNFGKIQSKSGDIVIGKYAE------- 134
V+ D V R + D L F DI+IGK A
Sbjct: 839 FEIPVRVERLLRYPDSTVVGRRNGDYTKLDIDGLIFPGKNVLGDDIIIGKTALPRNLFND 898
Query: 135 --------IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
I D S L+H+E+G++ V+L+SN++G +F V +R + +GDKF
Sbjct: 899 EMDDQTNLIKKDDSTSLRHSEKGIIDSVILTSNEEGDSFTKVKMR----AIRIPQIGDKF 954
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-DGL 219
+S HGQKG +G E P L+E K AC G
Sbjct: 955 ASRHGQKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTIGHLIECLASKVACFKGE 1014
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF +T +H +S L+ +G + G ++ W
Sbjct: 1015 EGDATPFQD-----VTVEH---ISNDLHRLGYQKRGNEVMYD------------GWTGR- 1053
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ ++IF T+YQ+ HM +DK+ R+ G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1054 -KMDTMIFLGPTYYQRLKHMVDDKIHSRSRGPLQILTRQPTEGRSRHGGLRFGEMERDCM 1112
Query: 340 IAHGASGNLHERL----KCKNV-----------ANVIQRVVGGPYCRICNSADDIIKANV 384
++HGA+ L ERL C V AN+ Q+ CR C ++ +I + +
Sbjct: 1113 VSHGAARFLKERLFDVSDCYTVHVCRICGLICEANLRQQKY---LCRGCQNSTNICQVGL 1169
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY KLL QEL +M I + T +S
Sbjct: 1170 PYACKLLFQEL-MAMQIAPRMITSVS 1194
>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
Length = 1178
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 145/503 (28%), Positives = 211/503 (41%), Gaps = 129/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DTL LFYPQ+P
Sbjct: 708 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGMYVTNFQIRMDTLAYVLFYPQKP 764
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ D
Sbjct: 765 LVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDE 824
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ Q RPS DD L + DI+IGK + + D
Sbjct: 825 EKKQGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPEDD 884
Query: 140 -------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S +K++E G++ +VLL++ND G F + +R + +GDKF
Sbjct: 885 PSAVSKRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRS----CRTPQVGDKF 940
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 941 SSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGK 1000
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S +L+ G + G ++ + L
Sbjct: 1001 EGDATPFTPVT--------VESISDMLHMCGYQKRGNEVMYNGHTGRKL----------- 1041
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ IF T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ DC+
Sbjct: 1042 ---EAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCI 1098
Query: 340 IAHGASGNLHERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKANV 384
I+HGA+ L ERL C+ VAN+ + C+ + +++ +
Sbjct: 1099 ISHGAAAFLKERLMDQSDAYRIHVCETCGLIAVANLKNQTF--ECCKNPSERTKVVQVMM 1156
Query: 385 PYGAKLLSQELSFSMGITLKFDT 407
PY KLL QEL SM + + T
Sbjct: 1157 PYACKLLFQEL-MSMAVAPRLVT 1178
>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
Length = 1214
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 135/506 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 737 SMILGVCGSIIPFPDHNQSPRN--TYQSAM-GKQAMGVHLTNYQLRMDTMANILYYPQKP 793
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA---- 97
L + L EDS++MNQ+S++ G+FRS Y++
Sbjct: 794 LATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYTDA 853
Query: 98 -------------EVDNKD-IQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYA--- 133
+ D KD +++K SD D L DI+IGK A
Sbjct: 854 EKMTGMEKVETIEKPDRKDTLRMKMGSSDRYAKLDIDGLIAPATNVNGDDIIIGKTAPIP 913
Query: 134 ----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S LK TE+G+V +V+LS+N DG F + IR +
Sbjct: 914 EESEELGQRTSLHTKRDVSTPLKSTEQGVVDQVMLSTNGDGHKFVKIRIRST----RVPQ 969
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P L+E L K
Sbjct: 970 IGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLS 1029
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS+ L G ++ G+ ++ + L
Sbjct: 1030 TMTGSEGDATPF--------TELTVEKVSKFLRQRGYQSRGLEVMYHGHTGRKL------ 1075
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1076 --------QAQIYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1127
Query: 335 KCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADDI 379
+ DC+I+HG + L ER+ +C +AN+ ++ +C +C ++ I
Sbjct: 1128 ERDCMISHGIAAFLKERMYDSSDGFRVHVCDQCGLMAIANLKKQEF---HCSVCRNSTQI 1184
Query: 380 IKANVPYGAKLLSQELSFSMGITLKF 405
+ +PY AKLL QEL +M I ++
Sbjct: 1185 SQIYIPYAAKLLFQELQ-AMNIAVRM 1209
>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 1247
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 145/509 (28%), Positives = 216/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 765 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 821
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 822 LATTRSMEYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDM 881
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I + DI+IGK A I D
Sbjct: 882 EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDS 941
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE+G V +VL+++N +G+ F V IR + +GD
Sbjct: 942 EELGQRTRGHTRRDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRST----RIPQIGD 997
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 998 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLI 1057
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ L G ++ G+ ++ + L
Sbjct: 1058 GNEGDATPF--------TDLTVESVSQFLRQRGYQSRGLEVMYHGHTGRKL--------- 1100
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1101 -----QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1155
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + + +
Sbjct: 1156 CMISHGIAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRACKNKTECSQL 1212
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1213 YIPYAAKLLFQELQ-SMNIAARLYTTSTG 1240
>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
C5]
Length = 1208
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 189/437 (43%), Gaps = 117/437 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q +SQLL G + G ++ + L
Sbjct: 1072 ITGQEGDATPFTD----VTVDQ----ISQLLEDAGYQKRGFEIMYNGHTGKKL------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERL 352
DC+IAHGA+ L ERL
Sbjct: 1170 RDCMIAHGAAAFLKERL 1186
>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
Length = 1190
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 208/500 (41%), Gaps = 123/500 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 720 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYTTNFHVRMDTLAHVLWYPQKP 776
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L ++S EDS++MN +S++ G+FRS Y++ D
Sbjct: 777 LVTTRSMEYLRFNELPAGINSIVAILSYTGYNQEDSVIMNSSSIDRGMFRSIFYRSYRDQ 836
Query: 102 ------KDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
++ + +P+ DD + + D++IGK +
Sbjct: 837 ESSREARNEETIEKPTRQICQGMRNAVYHKLDDDGIVSPGTRVSGDDVIIGKTIMLEDTD 896
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D S L+ +E G+V +V+LS N DG F V +R + +GDKF
Sbjct: 897 DSSTTKRSSKKDASTFLRASETGIVDQVMLSVNADGNKFVKVRVRS----IRIPQIGDKF 952
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGL 219
+S HGQKG +G + E P L+E GK A G
Sbjct: 953 ASRHGQKGTIGMIYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANRGE 1012
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
+ ATPF S + VS LL G G ++ + L
Sbjct: 1013 IGDATPFNDSV-------NVQKVSSLLQEYGYHLRGNEVMYSGFTGRKL----------- 1054
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ +F T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+ DC
Sbjct: 1055 ---NTQVFIGPTYYQRLKHMVDDKIHSRARGPLQMMARQPMEGRSRDGGLRFGEMERDCQ 1111
Query: 340 IAHGASGNLHERL----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL CK + + G CR C + I + N+PY
Sbjct: 1112 IAHGAAHFLKERLFEVSDPYTVYVCKICGIIAIANSRTGHYECRTCRNKTKISRVNIPYA 1171
Query: 388 AKLLSQELSFSMGITLKFDT 407
KLL QEL+ SM I + T
Sbjct: 1172 CKLLFQELT-SMCIAPRMKT 1190
>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
Length = 1208
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 189/437 (43%), Gaps = 117/437 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q +SQLL G + G ++ + L
Sbjct: 1072 ITGQEGDATPFTD----VTVDQ----ISQLLEDAGYQKRGFEIMYNGHTGKKL------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERL 352
DC+IAHGA+ L ERL
Sbjct: 1170 RDCMIAHGAAAFLKERL 1186
>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1209
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 216/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 728 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 784
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 785 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 844
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 845 EKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDS 904
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F + +R + +GD
Sbjct: 905 EELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRST----RIPQIGD 960
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 961 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLI 1020
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 1021 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL--------- 1063
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1064 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1118
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ERL +AN+ ++ CR C + +
Sbjct: 1119 CMISHGVAGFLKERLFEASDAYRLHVCDICGLTAIANLKKQSFE---CRACKNKTACSQL 1175
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1176 YIPYAAKLLFQELQ-SMNIAARLYTVSTG 1203
>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1237
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 217/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 758 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKP 814
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 815 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDL 874
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 875 EKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDS 934
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G++ +VL+++N +G+ F + +R + +GD
Sbjct: 935 EELGQRTRTHTKRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRST----RIPQIGD 990
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 991 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATIV 1050
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ+L G ++ G+ ++ + L
Sbjct: 1051 GNEGDATPF--------TDLTVESVSQILREQGYQSRGLEIMYHGHTGRKL--------- 1093
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1094 -----QAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1148
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + +
Sbjct: 1149 CMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRSCKNKTACSQL 1205
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1206 YIPYAAKLLFQELQ-SMNIAARLYTVSTG 1233
>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
commune H4-8]
gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
commune H4-8]
Length = 1204
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 146/510 (28%), Positives = 213/510 (41%), Gaps = 133/510 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 724 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIFLTNFILRMDTMANILYYPQKP 780
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 781 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYTDM 840
Query: 102 KDIQVKSRPS-------------------DDMLNFGKIQSKSG----DIVIGKYAEIGAD 138
+ V P+ D + + G I +G DI+IGK A I D
Sbjct: 841 EKKSVGMMPTEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPD 900
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S LK TE G++ +VLL++N+DGK V +R + +G
Sbjct: 901 SEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVRVRST----RIPQIG 956
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC- 216
DKF+S HGQKG +G E P L+E L K A
Sbjct: 957 DKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGHLVECLLSKVATL 1016
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G ATPF T+ VS+ L G + G+ ++ + L
Sbjct: 1017 IGNEGDATPF--------TDLTVEAVSKSLAAKGFQQRGLEVMYHGHTGRKL-------- 1060
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1061 ------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMER 1114
Query: 337 DCLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIK 381
DC+I+HG +G L ERL +AN+ ++ CR C + +
Sbjct: 1115 DCMISHGIAGFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFE---CRACKNKTACSQ 1171
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL +M I + T +G
Sbjct: 1172 LYIPYAAKLLFQELQ-AMNIAPRLYTTSTG 1200
>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
Length = 1009
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 208/488 (42%), Gaps = 128/488 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 552 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 608
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 609 LATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDS 668
Query: 102 KD------IQVKSRP-----------------SDDMLNFGKIQSKSGDIVIGKYAEIGAD 138
+ ++ +P D ++N G ++ DI+IGK A + D
Sbjct: 669 EKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPG-VRVSGEDIIIGKTAPLAPD 727
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S L+ TE G+V +VL+++ D ++ S++ + M +G
Sbjct: 728 AEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPD----SLRSVKVRMRMTKVPQIG 783
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G E P A L+E L K A
Sbjct: 784 DKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSAL 843
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G ATPF T I S+LL G ++ G ++ + L
Sbjct: 844 RGFEGDATPFTDVTVDSI--------SRLLREHGYQSRGFEVMYNGHTGRKLV------- 888
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 889 -------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMER 941
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKAN 383
DC+IAHGAS L ERL C + + + G CR+CN+ I + +
Sbjct: 942 DCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVH 1001
Query: 384 VPYGAKLL 391
+PY AKLL
Sbjct: 1002 IPYAAKLL 1009
>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1215
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 141/493 (28%), Positives = 202/493 (40%), Gaps = 131/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 741 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNFQMRMDTLANILYYPQKP 797
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 798 LTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDA 857
Query: 102 K---------DIQVKSRPSDDMLNFGKIQS-------------KSGDIVIGKYAEIGA-- 137
+ + + +R S L G + DI+IGK A I A
Sbjct: 858 EKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPAES 917
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V +V+L++N DG F V +R + +GD
Sbjct: 918 EELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRST----RVPQMGD 973
Query: 185 KFSSMHGQKGVLGFLEQ-----------TP---------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + TP L+E LGK
Sbjct: 974 KFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHLIECLLGKVSTLT 1033
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L G + G ++ + L
Sbjct: 1034 GNEGDATPFTDVTVEAI--------SQALQAQGYQQRGFEVMYNGFTGRKL--------- 1076
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1077 -----NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1131
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ + CR C + I +
Sbjct: 1132 CMISHGVAQFLKERLFDASDAYRVHVCDICGLMAIANLKKNNFE---CRSCKNKTRISQI 1188
Query: 383 NVPYGAKLLSQEL 395
++PY KLL QEL
Sbjct: 1189 HIPYACKLLFQEL 1201
>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
Length = 1226
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 215/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 747 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 803
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 804 LATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDL 863
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+++K D + + G I +G DI+IGK A I D
Sbjct: 864 EKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDS 923
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G++ +VL+++N +G+ F + +R + +GD
Sbjct: 924 EELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRST----RIPQIGD 979
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 980 KFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLI 1039
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ L G ++ G+ ++ + L
Sbjct: 1040 GNEGDATPF--------TDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKL--------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1137
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + +
Sbjct: 1138 CMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRSCKNKTACSQL 1194
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1195 YIPYAAKLLFQELQ-SMNIAARLYTVSTG 1222
>gi|224077112|ref|XP_002305137.1| predicted protein [Populus trichocarpa]
gi|222848101|gb|EEE85648.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 179/411 (43%), Gaps = 107/411 (26%)
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY+ E VK RP D
Sbjct: 28 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 87
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSN 159
D L + D++IGK I DHSI L+H+E G+V +VLL++N
Sbjct: 88 DGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGMVDQVLLTTN 147
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 148 ADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 203
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 204 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 255
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 256 MRGFETMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 301
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--NV 357
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +
Sbjct: 302 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI 361
Query: 358 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
AN+ + CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 362 ANLKKNSF---ECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 408
>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
disseminatus]
Length = 1241
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 145/509 (28%), Positives = 215/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 762 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 818
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 819 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDL 878
Query: 102 K------DIQVKSRPSDDML------NFGKIQSKS----------GDIVIGKYAEIGADH 139
+ ++ +P+ D + KI+ DI+IGK A I D
Sbjct: 879 EKKSGALQLEEFEKPTRDTTLRMKHGTYDKIEDDGFIAPGTNVTGEDIIIGKTAPIPPDS 938
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 939 EELGQRTRAHTRRDVSTPLKSTENGIVDQVLITTNAEGQKFVKVRVRST----RIPQIGD 994
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 995 KFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLI 1054
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 1055 GNEGDATPF--------TDLTVEAVSNFLRQKGYQSRGLEVMYHGHTGRKL--------- 1097
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1098 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1152
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ERL +AN+ ++ CR C + +
Sbjct: 1153 CMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANLKKQSFE---CRACKNKTACSQL 1209
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T SG
Sbjct: 1210 YIPYAAKLLFQELQ-SMNIAARLYTVSSG 1237
>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
versicolor FP-101664 SS1]
Length = 1231
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 216/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 752 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 808
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 809 LATTRSMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDL 868
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I + DI+IGK A I D
Sbjct: 869 EKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDS 928
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE+G++ +VL+++N +G+ F + +R + +GD
Sbjct: 929 EELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRST----RIPQIGD 984
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 985 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLI 1044
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ L G ++ G+ ++ +
Sbjct: 1045 GNEGDATPF--------TDLTVESVSQFLRQKGYQSRGLEIMYHGHTGR----------- 1085
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1086 ---KIQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1142
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + +
Sbjct: 1143 CMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRACRNKTACSQI 1199
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1200 YIPYAAKLLFQELQ-SMNIAARLYTTSTG 1227
>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 1228
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 215/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 747 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKP 803
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 804 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 863
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 864 EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDS 923
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 924 EELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRST----RIPQIGD 979
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 980 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLI 1039
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 1040 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL--------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1137
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + +
Sbjct: 1138 CMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRACKNKTACSQL 1194
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1195 YIPYAAKLLFQELQ-SMNIAARLYTVSTG 1222
>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
IC-167]
gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
Length = 1131
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/499 (28%), Positives = 212/499 (42%), Gaps = 125/499 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG IIP + + +Y++ + Q++GFP +N R+D+ L YP+RP
Sbjct: 656 SIMLGAVAHIIPYSEHNQSPRN--IYEAA-MAKQSLGFPYSNYRYRIDSRGHLLLYPERP 712
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
L + +G RP ED++++N+A++E G+FRS SY+ E
Sbjct: 713 LVTTRGLELIGYSMRPSGQNAVLALVSFMGYSIEDAVMINKAAIERGMFRSIFYRSYETE 772
Query: 99 V-------------------DNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGK------YA 133
D + + + +D + ++ S +++IGK Y+
Sbjct: 773 AMRYPMGENDRITIPPPTVRDYRGAEAYAHLDEDGIVPPEVFVSSKEVLIGKISPPRFYS 832
Query: 134 EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+ D+SI ++ E+G+V +VL++ + +G V +R+ + LGDK
Sbjct: 833 ALAESQLAGEWKDNSITVRRGEKGIVDQVLITESSEGFKLIKVKVRE----LRIPELGDK 888
Query: 186 FSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACDG 218
F+S HGQKGV+G +E P QLLEA GK A G
Sbjct: 889 FASRHGQKGVVGMIVPMEDMPFTENGITPDVVINPHALPSRMTIGQLLEAIAGKTAALYG 948
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
+ ATPF G I +L G R SG ++ L +D
Sbjct: 949 TLVDATPFEGVPEGTI--------RSMLMKAGYRWSGRETMYS-----GLMGTRLD---- 991
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ IF + +YQ+ HM DK+ R TG Q LT +P R R GG+ GEM+ D
Sbjct: 992 -----ADIFIGVVYYQKLHHMVADKIHARATGPMQILTRQPTEGRSREGGLRLGEMERDV 1046
Query: 339 LIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPY 386
LIAHGA+ LHER+ + V+ P C I I K VPY
Sbjct: 1047 LIAHGAAALLHERMVESSDKYVMYVCEDCGMMAWWDDFKKRPICPIHGDKGRIAKVIVPY 1106
Query: 387 GAKLLSQELSFSMGITLKF 405
KLL QEL S+GI K
Sbjct: 1107 AFKLLLQEL-ISLGIYPKL 1124
>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
Muguga]
gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
Length = 1190
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 151/505 (29%), Positives = 216/505 (42%), Gaps = 135/505 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP Q + + YQS QA+G +TN N+R+DTL L+YPQ+P
Sbjct: 715 SMILGVCASIIPFPDQNQSPRN--TYQS-AMGKQAMGVYSTNYNLRMDTLSHVLYYPQKP 771
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MNQ+S++ G+FRS +Y +E
Sbjct: 772 LVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSE 831
Query: 99 ---VDNKDIQVKSRP--SDDMLNF-----------GKIQSKS----GDIVIGKYAEIGAD 138
+ + I+ ++P S + LN G ++ S DI+IG+ + + AD
Sbjct: 832 EKYLGSTVIESFTKPTASGNFLNLKRGDYSKLDNDGLVEPGSRVLGDDIIIGRSSPVEAD 891
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S L+ E G+V VLL+ N+ G F V +R + +G
Sbjct: 892 PNNPQYTSEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRS----IRVPQIG 947
Query: 184 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G +E P L+E LGK G+
Sbjct: 948 DKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSL 1007
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G+ ATPF+ T I+ ++L C +R F
Sbjct: 1008 VGMEGDATPFSKMTLDQIS-------NRLFKCRYSRYGNEAF----------------HN 1044
Query: 277 AFI-CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
F L+ S IF T+YQ+ HM EDK+ R G LT +P R R GG+ FGEM+
Sbjct: 1045 GFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEME 1104
Query: 336 CDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDII 380
DC+I+HGA+ L ERL C +VAN+ C C++ I
Sbjct: 1105 RDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVANLNNSSF---QCTACDNKTQIS 1161
Query: 381 KANVPYGAKLLSQELSFSMGITLKF 405
+ +PY KLL QEL +M I K
Sbjct: 1162 QVTIPYACKLLLQEL-MAMAIYPKL 1185
>gi|333986471|ref|YP_004519078.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. SWAN-1]
gi|333824615|gb|AEG17277.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. SWAN-1]
Length = 603
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N N+R DT L
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYVSNYNMRTDTRAHLLHQ 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ PL D RP ED+L++N+ASLE G+ RS S
Sbjct: 182 PQVPLVKTRSIDATKYDKRPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 95 YKA-------------EVDN------KDIQVKSRPSDDMLNFGKIQSKSGDIVIGK---- 131
Y+A EV + +V +D + +++ KSGD++IGK
Sbjct: 242 YEASERRYPGGQEDKFEVPENIVRGYRSEEVYKHLDEDGIVNPEVEVKSGDVLIGKTSPP 301
Query: 132 -----------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
AE + S+ ++H E G+V VLL+ +G A + +R
Sbjct: 302 RFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVLLTETVEGSKLAKIRVRDQ----RQP 357
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
GDKF+S HGQKGV+G + E P Q+LE GK
Sbjct: 358 EFGDKFASRHGQKGVVGLIVSQENVPFTEEGVVPDLIVNPHAIPSRMSVGQVLEMLAGKA 417
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
GA +G TPF GG + ++ + +LL G +G ++
Sbjct: 418 GAMEGKRMDGTPF----GG----KQEAEIMELLKQNGFETAGRESLY------------- 456
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ I V + IF + FYQ+ HM+ DKV R+ G Q LT +P R R GG+ FGE
Sbjct: 457 NGITG-ERVEAEIFVGVAFYQKLHHMTADKVYARSRGPVQVLTRQPTEGRAREGGLRFGE 515
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDII 380
M+ DCLIAHGA+ L ERL +C +A + R+ YC IC + +
Sbjct: 516 MERDCLIAHGAALALKERLLDESDKYEAIVCNECGMIA-IYDRIRDKRYCSICGDS-ETF 573
Query: 381 KANVPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 574 PVEISYAFKLLLDEL 588
>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1208
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 188/437 (43%), Gaps = 117/437 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 781 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 835
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 836 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 895
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I
Sbjct: 896 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAT 955
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 956 DAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 1011
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 1012 GDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGA 1071
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q VSQLL G + G ++ + +
Sbjct: 1072 ITGQEGDATPFTD----VTVDQ----VSQLLENAGYQKRGFEIMYNGHTGKKM------- 1116
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1117 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEME 1169
Query: 336 CDCLIAHGASGNLHERL 352
DC+IAHGA+ L ERL
Sbjct: 1170 RDCMIAHGAAAFLKERL 1186
>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1266
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 189/435 (43%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 787 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYDVRMDTMANILYYPQKP 843
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 844 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFYRAYTDQ 903
Query: 101 -----------------NKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
N +++K + +D L ++ DI+IGK A + AD
Sbjct: 904 EKRIGMNALESFEKPYRNDTMKLKQGTYDKLDEDGLVAPGVRVSGDDIIIGKTAPLPADS 963
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N +G+ F V +R + +GD
Sbjct: 964 QDFGIRNKAHTKRDASTPLRSTENGIVDQVLLTTNSEGQKFVKVRMRTT----KIPQIGD 1019
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 1020 KFASRHGQKGTIGITYRHEDMPFTCQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLR 1079
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G + G ++ + +
Sbjct: 1080 GLEGDATPF--------TEVTVDSVSKLLRNHGYHSRGFEIMYHGHTGRKMM-------- 1123
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1124 ------AQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERD 1177
Query: 338 CLIAHGASGNLHERL 352
C+I+HGA+ L ERL
Sbjct: 1178 CMISHGAASFLKERL 1192
>gi|40644994|emb|CAD88980.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
Length = 401
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 170/400 (42%), Gaps = 108/400 (27%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFW------------------ILISDCLG--RP 74
QA+G TN R+DTL L+YPQ+PL I+ C
Sbjct: 4 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ 63
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY+ E VK RP D
Sbjct: 64 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYEKLDD 123
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSN 159
D L + D++IGK + DHSI L+H+E G+V +VLL++N
Sbjct: 124 DGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDHSISLRHSENGIVDQVLLTTN 183
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 184 ADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 239
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 240 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 291
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 292 MRGFETMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 337
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 338 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 377
>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
Length = 1127
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 219/502 (43%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SSILGAVASIIPYLEHNQSPRNQ----YEAA-MAKQSLGLPQSNLLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYK 96
RP+ + +G RP ED++++N+AS+E G+FRS +Y+
Sbjct: 707 RPIVTTRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYE 766
Query: 97 AE-----------VDNKDIQVK--------SRPSDDMLNFGKIQSKSGDIVIGK------ 131
E ++ D VK S +D + ++ S +++IGK
Sbjct: 767 TEEQKYPGGEEDRIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + A D S+ ++ ERG+V +V+++ + +G V +R+ + LG
Sbjct: 827 YTTLEAERILKERRDASVAVRRGERGIVDRVIVTESPEGNKLVKVRLRE----LRIPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGVLG L E P AQLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVLGMLLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAS 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV E + +LL +G + G ++ I
Sbjct: 943 TGHLVDATPFE----GVKEED----LRKLLLKLGYKWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF + +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGERLVAD-IFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL---KCKNVANV---------IQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ERL K V V + P C I A K V
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYLDAKSNKPRCPIHGDAGQFAKVVV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-IALGIYPKIE 1121
>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1193
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 140/493 (28%), Positives = 202/493 (40%), Gaps = 131/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 719 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNFQMRMDTLANILYYPQKP 775
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 776 LTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDA 835
Query: 102 K---------DIQVKSRPSDDMLNFGKIQS-------------KSGDIVIGKYAEIGA-- 137
+ + + +R S L G + DI+IGK A I A
Sbjct: 836 EKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPAES 895
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ TE G+V +V+L++N DG F V +R + +GD
Sbjct: 896 EELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRST----RVPQMGD 951
Query: 185 KFSSMHGQKGVLGFLEQ-----------TP---------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + TP ++E LGK
Sbjct: 952 KFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLGKVSTLT 1011
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L G + G ++ + L
Sbjct: 1012 GNEGDATPFTDVTVEAI--------SQALQAQGYQQRGFEVMYNGFTGRKL--------- 1054
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1055 -----NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1109
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ + CR C + I +
Sbjct: 1110 CMISHGVAQFLKERLFDASDAYRVHVCDICGLMAIANLKKNNFE---CRSCKNKTRISQI 1166
Query: 383 NVPYGAKLLSQEL 395
++PY KLL QEL
Sbjct: 1167 HIPYACKLLFQEL 1179
>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 1222
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 216/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DT+ L+YPQ+P
Sbjct: 743 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIFLTNFLIRMDTMANILYYPQKP 799
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 800 LATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 859
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I + DI+IGK A I D
Sbjct: 860 EKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDS 919
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE+G+V +VL+++N +G+ F + +R + +GD
Sbjct: 920 EELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRST----RIPQIGD 975
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 976 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLI 1035
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VSQ L G ++ G+ ++ + L
Sbjct: 1036 GNEGDATPF--------TDLTVESVSQYLRQKGYQSRGLEVMYHGHTGRKL--------- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1079 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1133
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + +
Sbjct: 1134 CMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---CRACKNKTACSQI 1190
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T +G
Sbjct: 1191 YIPYAAKLLFQELQ-SMNIAARLYTTSTG 1218
>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
Length = 1207
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 188/435 (43%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 780 SMILGICASIIPFPDHNQSPRN--CYQS-AMGKQAMGVFLTNFDVRMDTMANILYYPQKP 836
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 837 LATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 896
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A I D
Sbjct: 897 EKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDS 956
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE GLV +VL+++N +G F V +R + +GD
Sbjct: 957 EEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTT----KIPQIGD 1012
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G +++Q T A L+E L K
Sbjct: 1013 KFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLR 1072
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G + G ++ + +
Sbjct: 1073 GLEGDATPF--------TEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMM-------- 1116
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1117 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 1170
Query: 338 CLIAHGASGNLHERL 352
C+I+HGAS L ERL
Sbjct: 1171 CMISHGASAFLKERL 1185
>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
sp. DJM-731 SS1]
Length = 1258
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 210/495 (42%), Gaps = 135/495 (27%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN +R+DT+ L+YPQ
Sbjct: 773 SMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGIYLTNFQVRMDTMANILYYPQ 827
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y++
Sbjct: 828 KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYT 887
Query: 100 DNKD------IQVKSRPSDDML------NFGKIQS----------KSGDIVIGKYA---- 133
D + I+ +P D + K+++ DI+IGK A
Sbjct: 888 DMEKSTGVVPIEEFEKPHRDTTVRMKHGTYEKLEADGLVAPGIGINGEDIIIGKTAPLPP 947
Query: 134 ---EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
E+G D S LK TE G+V +VLLS+N++G F V IR + +
Sbjct: 948 DSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLLSTNENGVKFVKVRIRST----RIPQI 1003
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G E P L+E L K A
Sbjct: 1004 GDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHAIPSRMTIGHLVECLLSKLAT 1063
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T+ VS LL G + G+ ++ + L
Sbjct: 1064 LIGNEGDATPF--------TDLTVESVSSLLRNKGYQQRGLEVMYHGHTGRKL------- 1108
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
++ ++ T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+
Sbjct: 1109 -------QAQVYLGPTYYQRLKHMVDDKIHARARGPVQIMTRQPVEGRSRDGGLRFGEME 1161
Query: 336 CDCLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDII 380
DC+I+HG + L ER+ ++AN+ ++ CR C +
Sbjct: 1162 RDCMISHGVASFLKERMFDQSDAARLHVCDICGLASIANLKKQTF---ECRACKNKTRST 1218
Query: 381 KANVPYGAKLLSQEL 395
+ +PY AKLL QEL
Sbjct: 1219 QFYIPYAAKLLLQEL 1233
>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
Length = 614
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 188/445 (42%), Gaps = 111/445 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 199 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLFYPQKP 255
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 256 LVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 315
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
+ VK RP+ DD L + D++IGK + D
Sbjct: 316 EXKQGTLVKEEFERPNRETXTNMRHGSYDKLDDDGLTPPGTRVSGEDVIIGKTTPLSQDD 375
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S L+ +E G++ +VLL++N DG F + +R + +GDKF
Sbjct: 376 TGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRVRS----IRVPQIGDKF 431
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 432 SSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGR 491
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 492 EGDATPFTDVTVDSI--------SKALHKCGYQMRGFETMYNGHTXRRL----------- 532
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 533 ---NAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 589
Query: 340 IAHGASGNLHERLKCKNVANVIQRV 364
IAHGA+ L ERL ++ A + RV
Sbjct: 590 IAHGAAHFLKERLFDQSDAYRVHRV 614
>gi|402468839|gb|EJW03932.1| DNA-directed RNA polymerase II subunit RPB2, partial [Edhazardia
aedis USNM 41457]
Length = 594
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 209/489 (42%), Gaps = 116/489 (23%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ +IP + + YQS QA+G +TN R+DTL L+YPQ+P
Sbjct: 139 AMILGICASVIPFPDHNQSPRNT--YQSA-MGKQAMGIFSTNYLHRMDTLSNILYYPQQP 195
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L D L EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 196 LVPNKSMDYLKFNSLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSFFYRTYTD- 254
Query: 102 KDIQVKSRPS---------------DDMLNFGKI----------QSKSGDIVIGKYAEIG 136
Q SRP LN+ KI Q D++IGK ++
Sbjct: 255 ---QESSRPGLIEEFGKPVRGEVARMKNLNYSKIDKDGLITEGTQVLGDDVLIGKIKKMT 311
Query: 137 A---------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D S ++ TE G+V KV+L++ D G F V +R + +GDKF+
Sbjct: 312 VNNDPELSLIDGSTAMRSTETGIVDKVILTTRD-GYKFVKVKVRSN----RIPQMGDKFA 366
Query: 188 SMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GACDGLM 220
S HGQKG +G L+Q T L+E GK GA G
Sbjct: 367 SRHGQKGTIGITLKQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLCGKVGALKGEK 426
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
TPF V E VS L +G G +F + F E
Sbjct: 427 GNGTPFNQK---VTVES----VSNELFKLGYNKRGFE-VFYNGFTGRKLE---------- 468
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
+ +F TFYQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+I
Sbjct: 469 ---AQLFFGPTFYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCII 525
Query: 341 AHGASGNLHERL-KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
+HG S L ERL + + + + G CN + +K +VPY KLL QEL+ +M
Sbjct: 526 SHGCSLFLKERLFEVSDKYEIAVCRLCGFMTTTCNCGGETVKIDVPYAFKLLVQELN-AM 584
Query: 400 GITLKFDTQ 408
I L F+ +
Sbjct: 585 NINLNFEVE 593
>gi|312136876|ref|YP_004004213.1| DNA-directed RNA polymerase, subunit b' [Methanothermus fervidus
DSM 2088]
gi|311224595|gb|ADP77451.1| DNA-directed RNA polymerase, subunit B' [Methanothermus fervidus
DSM 2088]
Length = 604
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 138/492 (28%), Positives = 206/492 (41%), Gaps = 129/492 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ + G+S G+IP + + + K QA+G +N R DT LFYPQ P
Sbjct: 129 AVMFGVSAGLIPYANHNSSPRNTMEAAMAK---QALGIYASNYKYRTDTRSHLLFYPQIP 185
Query: 62 LFWILISDC-------LGRP-------------EDSLVMNQASLECGVFRS--------- 92
L I D G+ ED+L++N++++E G+ RS
Sbjct: 186 LVRTRIMDINEYDKMPAGQNFVVAVLSYEGYNMEDALIINKSAVERGLARSFFFRTYESS 245
Query: 93 -------ESYKAEVDNKDIQ-VKSRPS------DDMLNFGKIQSKSGDIVIGKYA----- 133
+ K E+ K I+ +S S D ++N G + GD++IGK +
Sbjct: 246 ERRYPGGQEDKFEIPKKGIRGYRSEDSYRHLDEDGIINPG-TEVSQGDVLIGKTSPPRFL 304
Query: 134 ----EIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
E G + S+ ++ E+G+V V+L+ + +G V +R LG
Sbjct: 305 GEIDEFGTVSDRRRESSVTVRPGEKGVVDTVILTESSEGNKLVKVKVRDG----RVPELG 360
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC- 216
DKF+S HGQKGV+G + E P Q+LE LGKGAC
Sbjct: 361 DKFASRHGQKGVIGLIVPEEDMPFTEDGLVPDLIINPHAIPSRMSVGQMLEMLLGKGACF 420
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
+G TPF T + + + +L G + G+ ++
Sbjct: 421 EGRRIDGTPF--------TGEKEEEIKHVLKKYGFESEGLEAMYNG-------------- 458
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ + IF + +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FGEM+
Sbjct: 459 MTGEKIEAEIFVGVVYYQKLHHMTADKVYARSRGPVQILTRQPTEGRAREGGLRFGEMER 518
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKAN 383
DCLIAHGA+ L ERL KC +A V ++ YC +C DI
Sbjct: 519 DCLIAHGAALTLKERLLDESDKYEALVCDKCGMLA-VYDKIHDKTYCPLCGDKSDIYPVE 577
Query: 384 VPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 578 MSYAFKLLLDEL 589
>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
Ankara]
gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
Length = 1223
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 150/505 (29%), Positives = 210/505 (41%), Gaps = 135/505 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP Q + + YQS QA+G +TN N+R+DTL L+YPQ+P
Sbjct: 748 SMILGVCASIIPFPDQNQSPRN--TYQS-AMGKQAMGVYSTNYNLRMDTLSHVLYYPQKP 804
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDSL+MNQ+S++ G+FRS
Sbjct: 805 LVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSE 864
Query: 93 ESY----------KAEVDNKDIQVKSRPSDDMLNFGKIQSKS----GDIVIGKYAEIGAD 138
E Y K K + +K + N G I+ S DI+IG+ + + +D
Sbjct: 865 EKYLGSTVIESFTKPTSTGKFLNLKRGDYSKLDNDGLIEPGSRVLGDDIIIGRSSPVESD 924
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S L+ E G+V VLL+ N+ G F V +R + +G
Sbjct: 925 PNNPQYTPEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRS----IRVPQIG 980
Query: 184 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G +E P L+E LGK G+
Sbjct: 981 DKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSL 1040
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G+ ATPF+ T I+ ++L C +R F
Sbjct: 1041 VGMEGDATPFSKMTLEQIS-------NRLFKCRYSRYGNEAF----------------HN 1077
Query: 277 AFI-CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
F L+ S IF T+YQ+ HM EDK+ R G LT +P R R GG+ FGEM+
Sbjct: 1078 GFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEME 1137
Query: 336 CDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDII 380
DC+I+HGA+ L ERL C +VAN+ C C++ I
Sbjct: 1138 RDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVANLNNSSFQ---CTACDNKTQIS 1194
Query: 381 KANVPYGAKLLSQELSFSMGITLKF 405
+ +PY KLL QEL +M I K
Sbjct: 1195 QVTIPYACKLLLQEL-MAMAIYPKL 1218
>gi|296412297|ref|XP_002835861.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629657|emb|CAZ80018.1| unnamed protein product [Tuber melanosporum]
Length = 436
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 195/460 (42%), Gaps = 130/460 (28%)
Query: 55 LFYPQRPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSES 94
L+YPQ+PL + L EDS++MNQ+S++ G+FRS
Sbjct: 5 LYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLF 64
Query: 95 YKAEVD------------------NKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKY 132
Y++ +D N +++K + DD L ++ DI+IGK
Sbjct: 65 YRSYMDQEKRIGMQIVEEFEKPTRNNTLKLKHGTYDKLDDDGLIAPGVRVSGEDIIIGKT 124
Query: 133 AEIGAD----------H-----SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
A I D H S L+ TE G+V +V+L++N +G F V +R +
Sbjct: 125 APIAPDVDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT---- 180
Query: 178 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 211
+GDKF+S HGQKG +G E P A L+E L
Sbjct: 181 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 240
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
K + G ATPF T VS LL G ++ G ++ Y L
Sbjct: 241 SKVSSLRGFEGDATPFTDVT--------VDSVSTLLRQNGYQSRGFEVMYNGYTGRKLV- 291
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+
Sbjct: 292 -------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLR 338
Query: 331 FGEMKCDCLIAHGASGNLHERL----------------KCKNVANVIQRVVGGPYCRICN 374
FGEM+ DC+IAHGAS L ERL +AN+ + + CR C
Sbjct: 339 FGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPIANLKKNLFE---CRPCR 395
Query: 375 SADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
+ I + ++PY AKLL QEL+ SM I + + SGVS+
Sbjct: 396 NKTKISQIHLPYAAKLLFQELA-SMNIAARMYHKRSGVSV 434
>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
IM2]
gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum aerophilum
str. IM2]
Length = 1127
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 218/502 (43%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SSILGAIASIIPYIEHNQSPRNQ----YEAA-MAKQSLGLPQSNFLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYK 96
RP+ + +G RP ED++++N+AS+E G+FRS +Y+
Sbjct: 707 RPIVTTRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYE 766
Query: 97 AE-----------VDNKDIQVK--------SRPSDDMLNFGKIQSKSGDIVIGK------ 131
E ++ D VK S +D + ++ S +++IGK
Sbjct: 767 TEEQKYPGGEEDRIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + A D S+ ++ E+G+V KV+++ + +G V +R+ + LG
Sbjct: 827 YTTLEAERILKERRDASVAVRRGEKGIVDKVIITESPEGNKLVKVRLRE----LRVPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P AQLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESIAGKLGAS 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV E + +LL +G + G ++ I
Sbjct: 943 TGQLIDATPFE----GVKEED----LRKLLLKLGYKWDGKEVMY-------------SGI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF I +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGERLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL---KCKNVANV---------IQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS LHERL K V V + P C I K V
Sbjct: 1041 DVLIAHGASALLHERLVESSDKYVMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVVV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-IALGIYPKLE 1121
>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
768-20]
gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
768-20]
Length = 1127
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 142/502 (28%), Positives = 214/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P N ++D+ L+YP+
Sbjct: 652 SSILGAIASIIPYLEHNQSPRNQ----YEAA-MAKQSLGLPQANFMYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYK--- 96
RP+ + +G +P ED+++MN++S++ G+FRS Y+
Sbjct: 707 RPIVTTRGLELIGYSRKPAGQNAVVALLTYTGYNIEDAVIMNKSSVDRGLFRSNFYRTYE 766
Query: 97 --------AEVDNKDI-----------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA---- 133
E D ++ + S +D + ++ G+++IGK A
Sbjct: 767 TEEQKYPGGEEDRIEVPDSSARGYRGPEAYSHLDEDGIAPPEVYVTGGEVIIGKTAPPRF 826
Query: 134 ----------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
+ D SI ++ ERG+V +V+++ + +G V +R+ + LG
Sbjct: 827 YMTLETEKILKERRDASIPVRRGERGIVDRVVITESPEGNKLVKVRLRE----LRVPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P QLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGAL 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF T G + E LL +G R G ++ I
Sbjct: 943 TGQLIDATPFEGVTEGELRE--------LLMKLGFRWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF I +YQ+ HM DK+ R+ G Q LT +P R R GG+ GEM+
Sbjct: 982 TGEKLVAD-IFIGIVYYQKLHHMVADKIHARSRGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ER+ C+ + + P C I + K V
Sbjct: 1041 DVLIAHGASALLYERMVESSDKYTMYVCELCGLPAYLDAKTNRPKCPIHGESGQFAKVVV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-IALGIYPKLE 1121
>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 129/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DT L+YPQ+P
Sbjct: 702 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGMYVTNYQTRMDTQAYVLYYPQKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MNQ+S++ G FRS +Y+AE
Sbjct: 759 LVTTRAMEHLHFRELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAE 818
Query: 99 -------------VDNKDIQVKSRP------SDDMLNFGKIQSKSGDIVIGKYAEIG--- 136
V ++ + V R DD + + D++IGK + +
Sbjct: 819 EKKQGSLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAPPGTRVSGEDVIIGKTSPLADEQ 878
Query: 137 ---------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D S L+++E G++ +V++++N +G+ F + +R + +GDKF+
Sbjct: 879 PGVAQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRS----IRIPQVGDKFA 934
Query: 188 SMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGLM 220
S HGQKG +G E P L+EA + K A G
Sbjct: 935 SRHGQKGTIGMTYTQEDMPWTSEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAALVGKE 994
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPFA T I S L+ G ++ G ++ + L
Sbjct: 995 GDATPFAEVTVDNI--------SAALHTCGYQSRGWETMYNGHTGRRL------------ 1034
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+I
Sbjct: 1035 --QAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCII 1092
Query: 341 AHGASGNLHERL-------------KCK--NVANVIQRVVGGPYCRICNSADDIIKANVP 385
+HG++ L ERL +C VAN+ + +C C + I++ ++P
Sbjct: 1093 SHGSAAFLKERLFDQSDAYRVHVCDRCGLFAVANLKKNQF---HCPACKNTTGIVQVHMP 1149
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL +M I +
Sbjct: 1150 YACKLLFQEL-MAMAIAPRM 1168
>gi|429961469|gb|ELA41014.1| DNA-directed RNA polymerase II subunit RPB2 [Vittaforma corneae
ATCC 50505]
Length = 442
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 196/460 (42%), Gaps = 132/460 (28%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLF------WILISDCLG--------------RP 74
QA+G +TN R+DTL LFYPQ+PL ++ D
Sbjct: 4 QAMGIFSTNFAFRMDTLSNILFYPQKPLVTTRSMEYLRFKDLPAGQNAIVAIACYTGYNQ 63
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------- 111
EDS++MNQ++++ G+FRS Y+ D +D+ +RP
Sbjct: 64 EDSVIMNQSAIDRGLFRSFLYRTYADQEDM---ARPGVNEEFCKPDRRTCTKMGNYNYNK 120
Query: 112 --DDMLNFGKIQSKSGDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVL 155
D L F + D++IGK I D S +K TE G+V V+
Sbjct: 121 LGTDGLVFPGTEVVGDDVLIGKVTPILDVEKSTRENPFYIMKDSSTVMKKTEEGVVDTVI 180
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF----------------- 198
++ N DG F+ V +R + +GDKF+S H QKG +G
Sbjct: 181 VT-NKDGYKFSKVKVRST----RIPQVGDKFASRHAQKGTVGITLRQEDMPFTSDGLVPD 235
Query: 199 ---------LEQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 248
+ T LLE LGK A G ATPF+ T I+E+ +SF Q
Sbjct: 236 IIVNPHAMPMRMTIGHLLECLLGKVSALSGEEGDATPFSEVTIEQISEKLKSFNYQSRG- 294
Query: 249 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
+ ++G+T +R+ IF T+YQ+ HM +DKV R
Sbjct: 295 LEVMHNGMTGR---------------------KLRAQIFIGPTYYQRLKHMVDDKVHARA 333
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK 355
GS Q ++ +P+ R R GG+ FGEM+ DC+I+HGAS L ERL KC
Sbjct: 334 RGSLQVMSRQPLEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDCYTCYVCDKCG 393
Query: 356 NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
+A + ++ C+ C++ I K +PY KLL QEL
Sbjct: 394 LLAISGKDIL---ECKGCSNQVAISKIQIPYAFKLLLQEL 430
>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
mediterranea MF3/22]
Length = 1274
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 213/509 (41%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R DT+ L+YPQ+P
Sbjct: 795 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYLTNFLMRQDTMANILYYPQKP 851
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+ +D
Sbjct: 852 LATTRAMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMDQ 911
Query: 101 ---------------NKDIQVK------SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+D ++ + DD L + + DI+IGK A I D
Sbjct: 912 EKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPDS 971
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE+G+V +V++++N +G F + +R + +GD
Sbjct: 972 EELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRST----RIPQIGD 1027
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 1028 KFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIV 1087
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS +L G ++ G+ ++ + L
Sbjct: 1088 GNEGDATPF--------TDLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKL--------- 1130
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1131 -----QAQVYLGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1185
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ERL +AN+ ++ CR C + I +
Sbjct: 1186 CMISHGIAAFLKERLFDASDAYRLHVCDLCGLTAIANLKKQSFE---CRACKNKTSISQL 1242
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL +M I + T +G
Sbjct: 1243 YIPYAAKLLFQELQ-AMNIAARLYTVSTG 1270
>gi|222445207|ref|ZP_03607722.1| hypothetical protein METSMIALI_00830 [Methanobrevibacter smithii
DSM 2375]
gi|222434772|gb|EEE41937.1| DNA-directed RNA polymerase subunit B [Methanobrevibacter smithii
DSM 2375]
Length = 603
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 202/488 (41%), Gaps = 126/488 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ GIIP + + + K QA+G +N +R DT L +PQ P+
Sbjct: 131 MLGICAGIIPFSDHNSSPRNTMEAGMTK---QALGLYVSNYALRTDTRAHLLHHPQTPIV 187
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA------ 97
I D RP ED++V+N+ SLE G+ RS ++A
Sbjct: 188 KTRIIDSTNYDKRPSGQNFVVALMSYEGYNMEDAMVINKGSLERGLARSSFFRAYDTAEK 247
Query: 98 ----------EVDNKDIQ-VKSRPS-----DDMLNFGKIQSKSGDIVIGK---------- 131
EV +K+I+ +S + DD + + +SGD++IGK
Sbjct: 248 RYPGGQEDKFEVPDKNIKGYRSEDAYRHLDDDGVVNPESYVESGDVLIGKTSPPRFLEEI 307
Query: 132 -----YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
AE + S+ ++H E+G+V VLL+ +G A + +R + GDKF
Sbjct: 308 DEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVRDT----RQPEFGDKF 363
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-DGL 219
+S HGQKGVLG + E P Q+LE GK C +G
Sbjct: 364 ASRHGQKGVLGLILSPEDVPFTESGVVPDLIVNPHAIPSRMSVGQVLEMVAGKAGCLEGE 423
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
TPF T I +Q ++ + C N G+T
Sbjct: 424 RVDGTPFNTELEKEIKQQLKNHGFESAGCESLYN-GVTG--------------------- 461
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ + IF + +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FGEM+ DCL
Sbjct: 462 ERIEAEIFVGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCL 521
Query: 340 IAHGASGNLHERL----------KCKN--VANVIQRVVGGPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL C+N + V + YC IC + + Y
Sbjct: 522 IAHGAALTLKERLLDESDKYEAIVCENCGMLAVYDKNKNKKYCPICGDV-ETYPIEISYA 580
Query: 388 AKLLSQEL 395
KLL EL
Sbjct: 581 FKLLLDEL 588
>gi|148642970|ref|YP_001273483.1| DNA-directed RNA polymerase subunit B' [Methanobrevibacter smithii
ATCC 35061]
gi|261350231|ref|ZP_05975648.1| DNA-directed RNA polymerase subunit B [Methanobrevibacter smithii
DSM 2374]
gi|148551987|gb|ABQ87115.1| DNA-dependent RNA polymerase, subunit B', RpoB [Methanobrevibacter
smithii ATCC 35061]
gi|288861017|gb|EFC93315.1| DNA-directed RNA polymerase subunit B [Methanobrevibacter smithii
DSM 2374]
Length = 603
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 140/492 (28%), Positives = 204/492 (41%), Gaps = 134/492 (27%)
Query: 4 LLGLSCGIIP----SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+LG+ GIIP + TM+ + + QA+G +N +R DT L +PQ
Sbjct: 131 MLGICAGIIPFSDHNSSPRNTMEAGM-------TKQALGLYVSNYALRTDTRAHLLHHPQ 183
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA-- 97
P+ I D RP ED++V+N+ SLE G+ RS ++A
Sbjct: 184 TPIVKTRIIDSTNYDKRPSGQNFVVALMSYEGYNMEDAMVINKGSLERGLARSSFFRAYD 243
Query: 98 --------------EVDNKDIQ-VKSRPS-----DDMLNFGKIQSKSGDIVIGK------ 131
EV +K+I+ +S + DD + + +SGD++IGK
Sbjct: 244 TAEKRYPGGQEDKFEVPDKNIKGYRSEDAYRHLDDDGVVNPESYVESGDVLIGKTSPPRF 303
Query: 132 ---------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
AE + S+ ++H E+G+V VLL+ +G A + +R +
Sbjct: 304 LEEIDEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVRDT----RQPEF 359
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKGVLG + E P Q+LE GK C
Sbjct: 360 GDKFASRHGQKGVLGLILSPEDVPFTESGVVPDLIVNPHAIPSRMSVGQVLEMVAGKAGC 419
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
+G TPF T I +Q ++ + C N G+T
Sbjct: 420 LEGERVDGTPFNTELEKEIKQQLKNHGFESAGCESLYN-GVTG----------------- 461
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ + IF + +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FGEM+
Sbjct: 462 ----ERIEAEIFVGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEME 517
Query: 336 CDCLIAHGASGNLHERL----------KCKN--VANVIQRVVGGPYCRICNSADDIIKAN 383
DCLIAHGA+ L ERL C+N + V + YC IC +
Sbjct: 518 RDCLIAHGAALTLKERLLDESDKYEAIVCENCGMLAVYDKNKNKKYCPICGDV-ETYPIE 576
Query: 384 VPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 577 ISYAFKLLLDEL 588
>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1189
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 147/487 (30%), Positives = 212/487 (43%), Gaps = 114/487 (23%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP Q + + YQS QA+G +TN N+R+DTL L+YPQ+P
Sbjct: 729 SMILGVCASIIPFPDQNQSPRN--TYQS-AMGKQAMGVYSTNYNLRMDTLSHVLYYPQKP 785
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MNQ+S++ G+FRS +Y +E
Sbjct: 786 LVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSE 845
Query: 99 ---VDNKDIQVKSRPS--DDMLNFGKIQ----SKSGDIVIGKYAE-----------IGAD 138
+ + I+ ++P+ + LN + G I G ++ + D
Sbjct: 846 EKYLGSTVIESFTKPTATSNFLNLKRGDYSKLDNDGLIEPGSRSDPNNPNYPAEMNLRMD 905
Query: 139 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
S L+ E G+V VLL+ N+ G F V +R V +GDKF+S HGQKG +G
Sbjct: 906 CSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRS----VRVPQIGDKFASRHGQKGTIGM 961
Query: 199 ---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTG 231
+E P L+E LGK GA G+ ATPF+ T
Sbjct: 962 TFRMEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGALVGMEGDATPFSKMTL 1021
Query: 232 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI-CLVRSLIFTWI 290
I+ S+L C ++ F F L+ S IF
Sbjct: 1022 EQIS-------SRLFKCHYSKYGNEAF----------------HNGFTGNLMASKIFVGP 1058
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM EDK+ R G LT +P R R GG+ FGEM+ DC+I+HGA+ L E
Sbjct: 1059 TYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKMLKE 1118
Query: 351 RLKCK------NVANV-----IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFS 398
RL + +V N+ I + + C C++ I + +PY KLL QEL +
Sbjct: 1119 RLFDQSDAYRVHVCNLCGLLSIANLNNSSFQCTACDNKTQISQVTIPYACKLLLQEL-MA 1177
Query: 399 MGITLKF 405
M I K
Sbjct: 1178 MAIYPKL 1184
>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
Length = 1197
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 143/503 (28%), Positives = 215/503 (42%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN IR+DT+ L+YPQ+P
Sbjct: 727 AMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYQIRMDTMANILYYPQKP 783
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 784 LATTRAMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSLYYRTFQDM 843
Query: 101 NKDIQVKS-----RPSDDM---LNFGKIQS-------------KSGDIVIGKYA------ 133
K + V + +P+ D L G + DI+IGK A
Sbjct: 844 EKKVGVITMEEFEKPTRDTAIRLKHGTYEKLDVDGLVPPGTRVSGEDIIIGKTAPLPPDS 903
Query: 134 -EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S +K TE G++ +VL+++N +G F V +R + +GD
Sbjct: 904 DELGMRSKMHTKKDVSTPMKSTESGIIDQVLITTNGEGAKFVKVRVRST----RVPQVGD 959
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 960 KFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLS 1019
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS +L +G ++ G+ ++ + L
Sbjct: 1020 GQEGDATPF--------TDLTVKGVSDILFSLGFQSRGLEVMYNGHTGRKL--------- 1062
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1063 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1117
Query: 338 CLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG + L ER+ + VAN+ + CR C + I +
Sbjct: 1118 CMISHGMANFLKERMYDASDAYRLHICDLCGLTAVANLRKSTFE---CRACRNRSAISQI 1174
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
++PY AKLL QEL SMGI +
Sbjct: 1175 HIPYAAKLLFQEL-MSMGIASRL 1196
>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
Length = 1186
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 148/505 (29%), Positives = 213/505 (42%), Gaps = 134/505 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 714 SMILGICASIIPYPNHNQSPRN--TYQS-AMGKQAMGIYASNFNMRMDTTAHVLFYPQKP 770
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKA- 97
L ++ C EDS++M+++++E G FRS SYKA
Sbjct: 771 LVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKAT 830
Query: 98 EVDNKDIQVKSRPSDDML------NFGKIQSK----------SGDIVIGKYAEIGA---- 137
E KD++ D + ++ K+ + GDI++GK I
Sbjct: 831 EERKKDVRETFENPDRKICRVKRADYTKLDADGLIKPGMPVIGGDILVGKTIPISEAKLE 890
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D SI + +E+G+V +V+L+ N G F V IR + +GDK
Sbjct: 891 NAALDDTRLLKRDCSIASRTSEKGVVERVMLTEN-SGNRFTKVKIR----TIKIPNIGDK 945
Query: 186 FSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-DG 218
F S HGQKG G F ++ T A L+E GK AC G
Sbjct: 946 FCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKG 1005
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE----CPMD 274
YATPF + V+ E + QL F+ Y CL+ P+D
Sbjct: 1006 SEVYATPFCS----VVVEDFGKALHQLK-------------FQRYGNECLYNGHTGSPLD 1048
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGEM
Sbjct: 1049 ---------HLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEM 1099
Query: 335 KCDCLIAHGASGNLHERL------KCKNVANVIQRVVGGPY------CRICNSADDIIKA 382
+ DC++++GAS L ERL +V N+ + C+ C++ I +
Sbjct: 1100 ERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICAADTEQNVYKCQGCDNDTRISQT 1159
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1160 LMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|325960116|ref|YP_004291582.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. AL-21]
gi|325331548|gb|ADZ10610.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. AL-21]
Length = 603
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N N+R DT L +
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYVSNYNMRTDTRAHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ PL D RP ED+L++N+AS+E G+ RS S
Sbjct: 182 PQVPLVKTKSMDATKYDKRPSGQNFVVAVMSYEGYNMEDALILNKASIERGLARSSFFRS 241
Query: 95 YKA-------------EVDN------KDIQVKSRPSDDMLNFGKIQSKSGDIVIGK---- 131
Y+A EV + +V +D + +++ KSGD++IGK
Sbjct: 242 YEASERRYPGGQEDKFEVPENIVRGYRSEEVYRHLDEDGIVNPEVEVKSGDVLIGKTSPP 301
Query: 132 -----------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
AE + S+ ++H E G+V VLL+ +G A + +R
Sbjct: 302 RFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVLLTETVEGSKLAKIRVRDQ----RQP 357
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
GDKF+S HGQKGV+G + E P Q++E GK
Sbjct: 358 EFGDKFASRHGQKGVVGLIVSQENMPFTEVGVVPDLIINPHAIPSRMSVGQVIEMLAGKA 417
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
G +G TPF GG + ++ + +LL G +G ++
Sbjct: 418 GTMEGKRMDGTPF----GG----KQEAEIMELLKQNGFETAGRESLY------------- 456
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ I + + IF + FYQ+ HM+ DKV R+ G Q LT +P R R GG+ FGE
Sbjct: 457 NGITG-ERIEAEIFVGVAFYQKLHHMTADKVYARSRGPVQVLTRQPTEGRAREGGLRFGE 515
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDII 380
M+ DCLIAHGA+ L ERL C +A + R+ YC IC + +
Sbjct: 516 MERDCLIAHGAALALKERLLDESDKYEALVCQDCGMIA-IYDRIRDKKYCAICGES-ETF 573
Query: 381 KANVPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 574 PVEISYAFKLLLDEL 588
>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1222
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 145/509 (28%), Positives = 214/509 (42%), Gaps = 132/509 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DT+ L+YPQ+P
Sbjct: 743 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGIFLTNFLIRMDTMANILYYPQKP 799
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS+++NQ+S++ G+FRS Y++ +D
Sbjct: 800 LATTRSMEYLKFRELPAGQNSIVAILCYSGYNQEDSVIVNQSSIDRGLFRSIYYRSYMDL 859
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+++K D + + G I + DI+IGK A I D
Sbjct: 860 EKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTNVTGEDIIIGKTAPIPPDS 919
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 920 EELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRST----RIPQIGD 975
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 976 KFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLI 1035
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 1036 GNEGDATPF--------TDLTVEGVSTFLRQRGYQSRGLEVMYHGHTGRKL--------- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1079 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1133
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG +G L ERL +AN+ ++ CR C + +
Sbjct: 1134 CMISHGIAGFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFE---CRACKNKTACSQL 1190
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLSG 411
+PY AKLL QEL SM I + T SG
Sbjct: 1191 YIPYAAKLLFQELQ-SMNIAARLYTVSSG 1218
>gi|408381651|ref|ZP_11179199.1| DNA-directed RNA polymerase subunit B' [Methanobacterium formicicum
DSM 3637]
gi|407815582|gb|EKF86152.1| DNA-directed RNA polymerase subunit B' [Methanobacterium formicicum
DSM 3637]
Length = 603
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 202/491 (41%), Gaps = 128/491 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ GIIP + + + K QA+G +N N+R DT L +PQ P
Sbjct: 129 STMLGICAGIIPYANHNSSPRNTMEAGMTK---QALGLYVSNYNLRTDTRAHLLHHPQVP 185
Query: 62 LFWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS---ESYKA- 97
+ D RP ED+L++N+AS+E G+ RS SY+A
Sbjct: 186 IVKTRSMDATQYDKRPSGQNFVVGVMSYEGYNMEDALILNKASIERGLARSSFFRSYEAS 245
Query: 98 ------------EVDN------KDIQVKSRPSDDMLNFGKIQSKSGDIVIGK-------- 131
EV + +V +D + ++ KSGD++IGK
Sbjct: 246 ERRYPGGQEDKFEVPENMVRGYRSEEVYRNLDEDGIVNPEVNVKSGDVLIGKTSPPRFLE 305
Query: 132 -------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE + S+ ++H E G+V V+L+ +G A + +R GD
Sbjct: 306 EIDEFGTVAERRRETSVTVRHGEHGVVDAVMLTETVEGSKLAKIRVRDQ----RQPEFGD 361
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKGV+G + E P Q+LE GK C +
Sbjct: 362 KFASRHGQKGVVGLIVSPENMPFTAEGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAGCME 421
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G TPF+ + Q + + L RN+G F E + I
Sbjct: 422 GHRMDGTPFSGN-------QEEEIMDLL------RNNG--------FETAGRESLYNGIT 460
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF + FYQ+ HM+ DKV R+ G Q LT +P R R GG+ FGEM+ D
Sbjct: 461 G-ERIEAEIFVGVAFYQKLHHMTSDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERD 519
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
CLIAHGA+ L ERL C VA + R+ YC IC +D +
Sbjct: 520 CLIAHGAALALKERLLDESDKYEAIICGDCGMVA-IYDRIRDKRYCPICGDSDS-YPVEI 577
Query: 385 PYGAKLLSQEL 395
Y KLL EL
Sbjct: 578 SYAFKLLLDEL 588
>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1005
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 184/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 571 SMLLGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 627
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS +++ D
Sbjct: 628 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDC 687
Query: 101 -------------NKDIQVKSRPS----DDMLNFG----KIQSKSGDIVIGKYAEIGADH 139
D RP D + N G I+ DI+IGK + I D+
Sbjct: 688 EKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDN 747
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V V ++N DG + V +R + +GD
Sbjct: 748 QELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT----KIPQIGD 803
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 804 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGALK 863
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 864 GMEGDATPFTDVT--------VDSVSNLLREHGYQSRGFEIMYHGHTGKKL--------- 906
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 907 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERD 961
Query: 338 CLIAHGASGNLHERL 352
C+IAHGA+ L ERL
Sbjct: 962 CMIAHGAAAFLKERL 976
>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
reilianum SRZ2]
Length = 1242
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 145/503 (28%), Positives = 216/503 (42%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + K QA+ +N R D++ L YPQ+P
Sbjct: 772 AMVLGICASIIPFPDHNQSPRNVYFSAMGK---QAVSVNISNFLSRADSMNHVLCYPQKP 828
Query: 62 L----------FWILI--SDCL--------GRPEDSLVMNQASLECGVFRSESYKAEV-D 100
L F L ++C+ EDS++MNQ+S++ G+FRS Y+ V +
Sbjct: 829 LGTTRSMEHLKFRELPAGTNCIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYYRGYVAE 888
Query: 101 NKDIQVK-----SRPSDDML------NFGKIQSK---------SGD-IVIGKYA------ 133
K + V +P+ D + KI + SGD ++IGK A
Sbjct: 889 EKKVGVMQLEEFEKPNRDTTIRMKHGTYDKIDADGFCAPGTRVSGDDVIIGKTAPLPPDS 948
Query: 134 -EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D SI LK TE G++ +VLL++N G F V +R + GD
Sbjct: 949 EELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNT----RVPQTGD 1004
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 1005 KFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAALS 1064
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS +L +G ++ G+ ++ + L
Sbjct: 1065 GQEGDATPF--------TELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKL--------- 1107
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1108 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERD 1162
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHG +G L ER+ +AN+ + G CR C + I +
Sbjct: 1163 CMIAHGIAGFLKERMFDVSDPYRIHVCDLCGLTALANLKK---GTYECRSCRNRTAISQI 1219
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
++PY AKLL QEL S+ + L+
Sbjct: 1220 HIPYAAKLLMQEL-MSVNVALRL 1241
>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
Length = 1141
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 213/501 (42%), Gaps = 125/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G IIP + + +Y++ + Q++GFP N R+D+ L YP+RP
Sbjct: 662 SVMIGAVASIIPYAEHNQSPRN--IYEA-AMAKQSLGFPAANYRFRMDSRGHLLIYPERP 718
Query: 62 LFW---ILISDCLGRP-----------------EDSLVMNQASLECGVFRS--------- 92
L I ++ L RP ED++++N++++E G++RS
Sbjct: 719 LVITRGIELNGYLERPAGQNAVVALLTYTGYNMEDAVILNKSAIERGMYRSVFFRTYETE 778
Query: 93 -------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGK-------- 131
E + E+ + +++ P +D + ++ G+++IGK
Sbjct: 779 QMRYPGGEEDRIEIPSAEVRGYKGPEAYAHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYG 838
Query: 132 -YAEI-----GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
Y E D SI ++ E+G+V V+++ ++G V +R+ + LGDK
Sbjct: 839 VYTETVVSSARRDSSITVRRGEKGIVDSVVVTETNEGYKLVKVKVRE----LRIPELGDK 894
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
F+S HGQKGV+G + T QLLE+ GK A G
Sbjct: 895 FASRHGQKGVMGMMIPMQDMPFTEDGITPDIIVNPHALPSRMTVGQLLESMAGKVAALRG 954
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
+M ATPF GV E+ + + + SG + K L ++
Sbjct: 955 VMIDATPFE----GVTEEELRDLLIR---------SGFRWDGKEVMYSGLTGRKLE---- 997
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ IF + +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+ D
Sbjct: 998 -----ADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDV 1052
Query: 339 LIAHGASGNLHERL----------KCKNVANV--IQRVVGGPYCRICNSADDIIKANVPY 386
LIAHGA+ L ERL C++ + G P C I I++ VPY
Sbjct: 1053 LIAHGAAALLRERLVESSDRYVMYVCEDCGMIAWYDSNKGKPVCPIHGDKGRIVRVVVPY 1112
Query: 387 GAKLLSQELSFSMGITLKFDT 407
KLL QEL S+GI + +
Sbjct: 1113 AFKLLLQEL-MSLGIYPRIEA 1132
>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
[Trypanosoma cruzi marinkellei]
Length = 1194
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 147/505 (29%), Positives = 214/505 (42%), Gaps = 134/505 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 722 SMILGICASIIPYPNHNQSPRN--TYQS-AMGKQAMGIYASNFNMRMDTTAHVLFYPQKP 778
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKA- 97
L ++ C EDS++M+++++E G FRS SYKA
Sbjct: 779 LVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKAT 838
Query: 98 EVDNKDIQVKSRPSDDML------NFGKIQSK----------SGDIVIGKYAEIGA---- 137
E KD++ D + ++ K+ + GDI++GK I
Sbjct: 839 EERKKDVRETFENPDPNICRVKRADYTKLDTDGLIKPGMPVMGGDILVGKTIPIPEAAQE 898
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+ SI + +E+G+V KV+L+ N +G F V +R + +GDK
Sbjct: 899 NTAMKNKRLLKRECSIASRTSEKGVVEKVMLTEN-NGNRFTKVKVR----TIKIPNIGDK 953
Query: 186 FSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-DG 218
F S HGQKG G F ++ T A L+E GK AC G
Sbjct: 954 FCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAVPSRMTVAHLIETLAGKVACYKG 1013
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE----CPMD 274
YATPF + V+ E + QL F+ Y CL+ P+D
Sbjct: 1014 SEVYATPFCS----VVVEDFGKALHQLK-------------FQRYGNECLYNGHTGSPLD 1056
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGEM
Sbjct: 1057 ---------HLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEM 1107
Query: 335 KCDCLIAHGASGNLHERL------KCKNVANVIQRVVGGPY------CRICNSADDIIKA 382
+ DC++++GAS L ERL +V N+ + C+ C++ I +
Sbjct: 1108 ERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICAADTEQNVYKCQGCDNDTRISQT 1167
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1168 LMPYACKLLFQEL-MSMAILPRLGT 1191
>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus kamchatkensis
1221n]
gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus kamchatkensis
1221n]
Length = 1149
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 212/493 (43%), Gaps = 125/493 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + +YQS + Q++G N R+DT L YPQRPL
Sbjct: 672 ILGITASIIPYPEHNQSPRN--MYQSA-MAKQSLGLYAANFQRRMDTRGHFLHYPQRPLV 728
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYK--AEVDN 101
+ + +G RP ED+L+MN++S+E G+ RS ++ V+
Sbjct: 729 ETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALIMNRSSVERGLARSTFFRLYTTVEY 788
Query: 102 K-------DIQVKS-------------RPSDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +I + S + +D + + Q GD++IGK +
Sbjct: 789 KYPGGIQDEITIPSTNVRGYRGQKAYEKLEEDGIVAPETQVSGGDVLIGKVSPPRFLSTQ 848
Query: 134 --EIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
E+G D SI ++H E+G+V VL++ + +G V +R + LGDKF+
Sbjct: 849 EYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIKVRVRD----LRIPELGDKFA 904
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DGLM 220
S HGQKGVLG L T AQL+E+ GK A +G +
Sbjct: 905 SRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFPSRMTVAQLMESIAGKAAALEGRI 964
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
TPF +++ + L + +H + + E D
Sbjct: 965 IDGTPF-----------YKTPIEDLQ----------IILRRHGYPYTGEEAMYDGRTG-E 1002
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
L+++ +F I +YQ+ HM+ DK+ R G Q LT +P R R GG+ +GEM+ DCLI
Sbjct: 1003 LIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCLI 1062
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
HG++ L E + ++ + +I R G C I + V Y
Sbjct: 1063 GHGSALLLKEAMTDRSDSTIIYVCELCGSMGWYDRNKGKFVCPIHKEKGVLKPVEVSYAF 1122
Query: 389 KLLSQELSFSMGI 401
KLL QEL SMGI
Sbjct: 1123 KLLLQEL-MSMGI 1134
>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
[Piriformospora indica DSM 11827]
Length = 1223
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 215/510 (42%), Gaps = 139/510 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G +N +R+DT+ L+YPQ+P
Sbjct: 736 SMILGVCASIVPFPDHNQSPRN--TYQS-AMGKQAMGISLSNFLVRMDTMANILYYPQKP 792
Query: 62 LF------WILISDCLG--------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L W+ D EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 793 LATTRALEWLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDM 852
Query: 102 KD------IQVKSRPSDDML------NFGKIQSKS----------GDIVIGKYA------ 133
+ ++ +PS D N+ K+ DI+IGK A
Sbjct: 853 EKTAGQITLEEFEKPSRDTTLRMKHGNYDKLDDDGLIAPGMNVIGEDIIIGKTAPLPPDS 912
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S LK TE G++ VL++ + +G F + +R + +GD
Sbjct: 913 QELGQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRST----RIPQVGD 968
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G L E P L+E L K A +
Sbjct: 969 KFASRHGQKGTIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLN 1028
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T EQ VS L G ++ G+ ++ + L
Sbjct: 1029 GQEGDATPFTDLT----VEQ----VSHALRAAGYQSRGLEVMYHGHTGKKL--------- 1071
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC- 336
++ ++ T+YQ+ HM EDK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1072 -----QAQVYLGPTYYQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMEAS 1126
Query: 337 ------DCLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNS 375
DC+I+HG + L ERL +AN+ ++ CR C +
Sbjct: 1127 QNSLIRDCMISHGIAAFLKERLFDASDAYRLHVCDICGLTAIANLKKQSF---ECRSCKN 1183
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKF 405
+ + +PY AKLL QEL +M I +
Sbjct: 1184 KTAVSQLYIPYAAKLLIQELQ-AMNIAARL 1212
>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
16532]
gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
16532]
Length = 1166
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 212/493 (43%), Gaps = 125/493 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + +YQS + Q++G N R+DT L YPQRPL
Sbjct: 689 ILGITASIIPYPEHNQSPRN--MYQSA-MAKQSLGLYAANFQRRMDTRGHFLHYPQRPLV 745
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYK--AEVDN 101
+ + +G RP ED+L+MN++S+E G+ RS ++ V+
Sbjct: 746 ETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALIMNRSSVERGLARSTFFRLYTTVEY 805
Query: 102 K-------DIQVKS-------------RPSDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +I + S + +D + + Q GD++IGK +
Sbjct: 806 KYPGGIQDEITIPSTNVRGYRGQKAYEKLEEDGIVAPETQVSGGDVLIGKVSPPRFLSAQ 865
Query: 134 --EIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
E+G D SI ++H E+G+V VL++ + +G V +R + LGDKF+
Sbjct: 866 EYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIKVRVRD----LRIPELGDKFA 921
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DGLM 220
S HGQKGVLG L T AQL+E+ GK A +G +
Sbjct: 922 SRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFPSRMTVAQLMESIAGKAAALEGRI 981
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
TPF +++ + L + +H + + E D
Sbjct: 982 IDGTPF-----------YKTPIEDLQ----------IILRRHGYPYTGEEAMYDGRTG-E 1019
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
L+++ +F I +YQ+ HM+ DK+ R G Q LT +P R R GG+ +GEM+ DCLI
Sbjct: 1020 LIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCLI 1079
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
HG++ L E + ++ + +I R G C I + V Y
Sbjct: 1080 GHGSALLLKEAITDRSDSTIIYVCELCGSMGWYDRNKGKFVCPIHKEKGVLKPVEVSYAF 1139
Query: 389 KLLSQELSFSMGI 401
KLL QEL SMGI
Sbjct: 1140 KLLLQEL-MSMGI 1151
>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
Length = 1196
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 143/492 (29%), Positives = 206/492 (41%), Gaps = 128/492 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 689 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 745
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS++MN+ +++ G+FRS Y++ D
Sbjct: 746 LVTTRSMEYLRFRELPAGINTIVAIASYTGYNQEDSIIMNRGAIDRGLFRSVFYRSYRDQ 805
Query: 102 KDI------QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAE----- 134
+ ++ +PS DD L + GDIVIGK A
Sbjct: 806 ESSGDFNSEEIFEKPSKETCSGMHNAMYDKLDDDGLVAPGTRVSGGDIVIGKTALLPEDA 865
Query: 135 ----------IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
+ D S L+ +E G+V +VLL+ + +G F V +R V +GD
Sbjct: 866 DALGDTNKRFVKRDASTGLRSSESGIVDQVLLTVSQEGYKFTKVRVRS----VRIPQIGD 921
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 922 KFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 981
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF +T Q +S LL+ G G ++ + L
Sbjct: 982 GEIGDATPF----NDTLTVQK---ISSLLSDYGYHLRGNEVLYNGFTGRKL--------- 1025
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1026 -----NTQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMQGRARDGGLRFGEMERD 1080
Query: 338 CLIAHGASGNLHERLK-------------CKNVANVIQRVVGGPY-CRICNSADDIIKAN 383
C I+HGA+ L ERL C VA + + Y C+ C + I +
Sbjct: 1081 CQISHGAAQFLRERLYDASDPYIVHMCNLCGLVA--VANLRNDTYECKGCRNKTRISQVR 1138
Query: 384 VPYGAKLLSQEL 395
+PY KLL QEL
Sbjct: 1139 IPYACKLLFQEL 1150
>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1172
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 214/504 (42%), Gaps = 131/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 702 SMILGICGSIIPFPDHNQSPRN--TYQS-AMGKQAMGMYVTNFQLRMDTLAYVLFYPQKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ D
Sbjct: 759 LVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDE 818
Query: 102 KDIQVKSRPSDDML-------------NFGKIQSK---------SG-DIVIGKYAEIGAD 138
+ Q S +D+ +GK+ SG DI+IGK + + D
Sbjct: 819 EKKQ-GSLTKEDLECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLPDD 877
Query: 139 H-------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
S +K++E G++ +VLL++ND G F + +R + +GDK
Sbjct: 878 DPSAASNRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRS----CRTPQVGDK 933
Query: 186 FSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDG 218
FSS HGQKG +G E P QL+E +GK A G
Sbjct: 934 FSSRHGQKGTIGMTYTQEDMPFTCEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMG 993
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF T +S +L+ G + G ++ + L
Sbjct: 994 KEGDATPFTPVT--------VENISDMLHQCGYQKRGNEVMYNGHTGRKL---------- 1035
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ IF T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ DC
Sbjct: 1036 ----EAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDC 1091
Query: 339 LIAHGASGNLHERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKAN 383
+I+HGA+ L ERL C+ VAN+ + C+ + +++
Sbjct: 1092 IISHGAAAFLKERLMDQSDAYRVHVCQTCGLIAVANLKNQTF--ECCKNPSERMKVVQVL 1149
Query: 384 VPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM + + T
Sbjct: 1150 LPYACKLLFQEL-MSMAVAPRLVT 1172
>gi|410722154|ref|ZP_11361466.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp.
Maddingley MBC34]
gi|410597473|gb|EKQ52086.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp.
Maddingley MBC34]
Length = 603
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 138/491 (28%), Positives = 202/491 (41%), Gaps = 128/491 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ GIIP + + + K QA+G +N ++R DT L +PQ P
Sbjct: 129 STMLGICAGIIPYANHNSSPRNTMEAGMTK---QALGLYVSNYHLRTDTRAHLLHHPQVP 185
Query: 62 LFWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS---ESYKA- 97
+ D RP ED+L++N+AS+E G+ RS SY+A
Sbjct: 186 IVKTRSMDATQYDKRPSGQNFVVGVMSYEGYNMEDALILNKASIERGLARSSFFRSYEAS 245
Query: 98 ------------EVDN------KDIQVKSRPSDDMLNFGKIQSKSGDIVIGK-------- 131
EV + +V +D + ++ KSGD++IGK
Sbjct: 246 ERRYPGGQEDKFEVPENMVRGYRSEEVYRNLDEDGIVNPEVTVKSGDVLIGKTSPPRFLE 305
Query: 132 -------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE + S+ ++H E G+V V+L+ +G A + +R GD
Sbjct: 306 EIDEFGTVAERRRETSVTVRHGEHGVVDAVMLTETVEGSKLAKIRVRDQ----RQPEFGD 361
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKGV+G + E P Q+LE GK C +
Sbjct: 362 KFASRHGQKGVVGLIVSQENMPFTAEGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAGCME 421
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G TPF+ + + + LL G +G ++ + I
Sbjct: 422 GHRMDGTPFSGN--------QEDEIMDLLRTNGFETAGRESLY-------------NGIT 460
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF + FYQ+ HM+ DKV R+ G Q LT +P R R GG+ FGEM+ D
Sbjct: 461 G-ERIEAEIFVGVAFYQKLHHMTSDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERD 519
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
CLIAHGA+ L ERL +C VA + R+ YC IC +D +
Sbjct: 520 CLIAHGAALALKERLLDESDKYEAIVCGECGMVA-IYDRIRDKRYCPICGDSDS-FPVEI 577
Query: 385 PYGAKLLSQEL 395
Y KLL EL
Sbjct: 578 SYAFKLLLDEL 588
>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
SJ-2008]
Length = 1141
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 145/500 (29%), Positives = 210/500 (42%), Gaps = 136/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 672 ALILGICASTIPFPDHNQSPRN--TYQS-AMGKQAMGIYATNFLLRMDTLSNILFYPQKP 728
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 729 LVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQ 788
Query: 102 KDIQVKSRPSDDM---------------LNFGK----------IQSKSGDIVIGKYAEI- 135
+ + SRP + LN+ K ++ D++IGK I
Sbjct: 789 ESM---SRPGVNEEFCKPNRGSVLRMKNLNYNKLDEDGLISPGVRVTGDDVLIGKITPIL 845
Query: 136 -------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V V+++ N DG F+ V IR +
Sbjct: 846 DPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKIRSG----RIPQM 900
Query: 183 GDKFSSMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GA 215
GDKF+S H QKG +G L Q T L+E LGK A
Sbjct: 901 GDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGKVSA 960
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF +G + E +S L G + G+ ++ L
Sbjct: 961 MSGEEGDATPF---SGMSVNE-----ISTRLKSYGFQQRGLEVMYNGMTGRKL------- 1005
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1006 -------RAQIFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1058
Query: 336 CDCLIAHGASGNLHERL-------KCK--NVANVIQRVVGGPY---CRICNSADDIIKAN 383
DC+I+HGAS L ERL C N+ ++ +GG C+ CN+ ++
Sbjct: 1059 RDCIISHGASAFLKERLMDVSDAYSCYVCNLCGLL--AMGGTKVNECKGCNNTTNVSMVE 1116
Query: 384 VPYGAKLLSQELSFSMGITL 403
+PY KLL QEL MG+ +
Sbjct: 1117 IPYAFKLLIQEL---MGMNI 1133
>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
Length = 1206
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 145/490 (29%), Positives = 223/490 (45%), Gaps = 104/490 (21%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ +IP H Q+ YQ+ QAIG +N + R+DT+ L+YPQ
Sbjct: 728 SVILGVCASLIPFCDHNQSPRNT----YQAA-MGKQAIGINVSNYDFRMDTMCHILYYPQ 782
Query: 60 RPLF------WILISD------------CLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL +I D C G EDS++M+Q S++ G+FRS ++
Sbjct: 783 KPLVCTKSMNFIKFKDFPNGINAIVAIACYGGYNQEDSIIMSQDSIDRGLFRSFFFRNYK 842
Query: 100 DNKDIQVKSR------PSDDMLNFGKIQS----------------KSGDIVIGKYA---- 133
D + I+ + P+ N KI S S DI+IGK
Sbjct: 843 DVEKIKFGGKKETFEIPNWKSCNGIKIHSYEKLDLDGLIGEGKKVNSNDIIIGKTCPTNL 902
Query: 134 ---------------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVH 178
+I D S +K+ E G+V KV+L+ +D+G F +V IR + V
Sbjct: 903 FDNNNEDLRLLGKNLKIKTDCSSSIKNFETGVVDKVILAKSDEG--FRLVKIR--IRSVR 958
Query: 179 SACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITE 236
+GDKF+S HGQKG++G + Q E + + D +M+ +A P + G ++
Sbjct: 959 LPQIGDKFASRHGQKGIIGMIYRQVNMPFSEQGI---SPDIIMNPHAIPSRMTIGHLL-- 1013
Query: 237 QHQSFVSQLLNCIGARNSGITFIFKHY--FLFCLFECPMDWIAFICL--------VRSLI 286
+ +S+ ++ G G F ++ + L + D + L ++SLI
Sbjct: 1014 --ECLLSKAVSMKGIEGDGTPFERQNMEDIMNFLEKNNFDKNGWEILYNGFNGKRIKSLI 1071
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F T+YQ+ HM EDK+ R G Q LT +PV R R GG+ FGEM+ DC+I+HGA+
Sbjct: 1072 FMGPTYYQKLKHMVEDKIHSRARGPIQILTRQPVEGRSREGGLRFGEMERDCMISHGAAI 1131
Query: 347 NLHERL----------KCKNVANVI--QRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
L +RL C ++ + CR C++ I +PY KLL QE
Sbjct: 1132 FLKDRLFDQSDPFGIYVCDFCGFIVVSNKKQNNFECRNCSNRSMISFIRIPYAFKLLIQE 1191
Query: 395 L-SFSMGITL 403
L S S+G+ L
Sbjct: 1192 LMSLSVGVRL 1201
>gi|84490161|ref|YP_448393.1| DNA-directed RNA polymerase subunit B' [Methanosphaera stadtmanae
DSM 3091]
gi|84373480|gb|ABC57750.1| RpoB1 [Methanosphaera stadtmanae DSM 3091]
Length = 603
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 141/480 (29%), Positives = 202/480 (42%), Gaps = 106/480 (22%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ GIIP + + + K QA+G +N N+R DT L PQ P
Sbjct: 129 STMLGICAGIIPYANHNSSPRNTMEAGMTK---QALGLYVSNYNLRTDTRAHLLHQPQMP 185
Query: 62 LFW---ILISDCLGRP-----------------EDSLVMNQASLECGVFRS---ESYKA- 97
+ ++ ++ RP ED+LVMN+A+LE G+ RS SY+A
Sbjct: 186 VVKTKSMVSTEYDKRPSGQNFVVAILSYQGCNMEDALVMNKAALERGLGRSSFFRSYEAS 245
Query: 98 -------EVDN-----------KDIQVKSRPSDDMLNFGKIQSKSGDIVIGK-------- 131
+ D+ + +V +D L ++ SGD++IGK
Sbjct: 246 ERRYPGGQEDHFEYPESMVRGYRSEEVYKHLDEDGLINPEVPVTSGDVLIGKTSPPRFLE 305
Query: 132 -------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE + S+ ++H E G+V KV+L+ +G A V +R GD
Sbjct: 306 DVDEFGTVAERRRETSVTVRHGEHGIVDKVMLTETVEGSKLAKVKVRDH----RQPEYGD 361
Query: 185 KFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQ 239
KF+S HGQKGVLG + E P G C LM +A P S G +I
Sbjct: 362 KFASRHGQKGVLGLIVPQENMPFN------ENGMCPDLMINPHAIPSRMSIGQII----- 410
Query: 240 SFVSQLLNCI-GARNSGITFI------FKHYFLFCLFECPMDWIAFICLV----RSLIFT 288
++ C+ G R G F K FE + + ++ IF
Sbjct: 411 EMLAGKAGCMEGHRIDGTPFTGVPEDEIKRLLKENGFETHGREQLYNGITGERFKAEIFV 470
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FGEM+ DCLIAHGA+ L
Sbjct: 471 GVAYYQKLHHMTSDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALAL 530
Query: 349 HERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
ERL C +A V ++ YC IC + + Y KLL EL
Sbjct: 531 KERLLDESDKYEALLCGNCGRLA-VRDKIRDRTYCAICGET-ETFPIEISYAFKLLLDEL 588
>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
Length = 1141
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 211/501 (42%), Gaps = 125/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G +IP + + +Y++ + Q++GFP N R+D+ L YP+RP
Sbjct: 662 SVMIGAVASVIPYAEHNQSPRN--IYEA-AMAKQSLGFPAANYRFRMDSRGHLLIYPERP 718
Query: 62 LFW---ILISDCLGRP-----------------EDSLVMNQASLECGVFRS--------- 92
L + ++ LGRP ED++++N++S+E G++RS
Sbjct: 719 LVITRGMELNGYLGRPAGQNAVVALLTYTGYNMEDAVILNRSSIERGMYRSVFFRTYETE 778
Query: 93 -------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGK-------- 131
E + E+ + +++ P +D + ++ G+++IGK
Sbjct: 779 QMRYPGGEEDRIEIPSAEVRGYKGPEAYAHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYG 838
Query: 132 -YAEI-----GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
Y E D SI ++ E+G+V V+++ ++G V +R+ + LGDK
Sbjct: 839 VYTEAVVSSARRDSSITVRRGEKGIVDSVVITETNEGYKLVKVKVRE----LRIPELGDK 894
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
F+S HGQKGV+G + T QLLE+ GK A G
Sbjct: 895 FASRHGQKGVMGMMIPMQDMPFTEDGITPDIIVNPHALPSRMTVGQLLESMAGKVAALRG 954
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
L ATPF GV E+ + LL G R G ++ L
Sbjct: 955 LTIDATPFE----GVTEEE----LRDLLIRSGFRWDGKEVMYSGLTGRKL---------- 996
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ IF + +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+ D
Sbjct: 997 ----EADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDV 1052
Query: 339 LIAHGASGNLHERL----------KCKNVANV--IQRVVGGPYCRICNSADDIIKANVPY 386
LIAHGA+ L ERL C++ + G P C I I++ VPY
Sbjct: 1053 LIAHGAAALLKERLVESSDKYVMYVCEDCGMIAWYDANKGKPVCPIHGDKGRIVRIVVPY 1112
Query: 387 GAKLLSQELSFSMGITLKFDT 407
KLL EL S+GI + +
Sbjct: 1113 AFKLLLHEL-MSLGIYPRIEA 1132
>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
Oxelman 2319]
Length = 627
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 185/433 (42%), Gaps = 111/433 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 194 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGMYITNYQLRMDTLAYVLYYPQKP 250
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 251 LVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFFRSYRDE 310
Query: 99 VDNKDIQVKSR---PSDDML------NFGKIQSK---------SG-DIVIGKYAEIGAD- 138
VK P+ + ++ K+ + SG D++IGK + D
Sbjct: 311 EKKMGTLVKEEFGSPNRENTMGMRHGSYDKLDADGFAPPGTRVSGEDVIIGKTTSLPQDE 370
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +V L++N DG F V +R V +GDKF
Sbjct: 371 AQGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLRFVKVRMRS----VRIPQIGDKF 426
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 427 SSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 486
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + + +
Sbjct: 487 EGDATPFTDVT--------VDNISKALHKCGYQMRGFERVYNGHTGRIMGD--------- 529
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
LIF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 530 -----LIFMGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 584
Query: 340 IAHGASGNLHERL 352
IAHGA+ L ERL
Sbjct: 585 IAHGAAHFLKERL 597
>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
Length = 1173
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 138/503 (27%), Positives = 211/503 (41%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 700 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 756
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MNQ+ ++ G+FRS Y+
Sbjct: 757 LVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFRSVFYRSYRDQ 816
Query: 97 -AEVDNKDIQVKSRPSDDMLN------FGKIQSK---------SG-DIVIGKYAEI---- 135
A +DN + ++ +P+ D + + K+ SG D++IGK +
Sbjct: 817 EANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDVE 876
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+L+ N DG F + +R V +GD
Sbjct: 877 DDLEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRS----VRLPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + E P L+E GK A
Sbjct: 933 KFASRHGQKGTMGIMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ + L
Sbjct: 993 GEIGDATPFNDTV-------NVQKISNLLSEYGYHLRGNEIMYNGHTGHKL--------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+ D
Sbjct: 1037 -----TTQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C N +AN+ C+ C + +
Sbjct: 1092 CQISHGAAQFLRERLFEVSDPYHVYVCNNCGLIVIANLRTNTFE---CKACRNKTQVSAI 1148
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1149 RIPYACKLLFQEL-MSMSIAPRL 1170
>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 1140
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 208/500 (41%), Gaps = 136/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 671 ALILGICASTIPFPDHNQSPRN--TYQSA-MGKQAMGIYATNFLLRMDTLSNILFYPQKP 727
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 728 LVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQ 787
Query: 102 KDIQVKSRPSDDM---------------LNFGKIQSKS----------GDIVIGKYAEI- 135
+ + SRP + LN+ K+ D++IGK I
Sbjct: 788 ESM---SRPGVNEEFCKPSRGTVLRMKNLNYNKLDEDGLISPGTRVTGDDVLIGKITPIL 844
Query: 136 -------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V V+++ N DG F+ + +R +
Sbjct: 845 DPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKIKVRSG----RIPQM 899
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S H QKG +G E P L+E LGK A
Sbjct: 900 GDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGKVSA 959
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF+ T I+ + +S+ G + G+ ++ L
Sbjct: 960 MSGEEGDATPFSDMTVNEISAKLKSY--------GFQQRGLEVMYNGMTGRKL------- 1004
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1005 -------RAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1057
Query: 336 CDCLIAHGASGNLHERLKCKNVANVIQRVV---------GGPY---CRICNSADDIIKAN 383
DC+I+HGAS L ERL +V++ V GG C+ CN+ ++
Sbjct: 1058 RDCIISHGASAFLKERL--MDVSDAYSCFVCNFCGLLAMGGSKVNECKGCNNTTNVSMIE 1115
Query: 384 VPYGAKLLSQELSFSMGITL 403
+PY KLL QEL MG+ +
Sbjct: 1116 IPYAFKLLVQEL---MGMNI 1132
>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
Length = 1182
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 188/435 (43%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 736 SMLLGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKP 792
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 793 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDC 852
Query: 101 -----------------NKDIQVKSRPSDDMLNFG----KIQSKSGDIVIGKY------- 132
+ +++K D + G I+ DI+IGK
Sbjct: 853 EKRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDIIIGKTCPINPDN 912
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE+G D S L+ TE G++ +V++++N DG + V +R + +GD
Sbjct: 913 AELGQRSNQHVKRDASTPLRSTESGIIDQVVMTTNQDGMRYVKVRVRTT----KVPQIGD 968
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 969 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 1028
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 1029 GMEGDATPFTDVT--------VDSVSDLLREHGYQSRGFEIMYHGHTGRKL--------- 1071
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
RS IF T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ D
Sbjct: 1072 -----RSQIFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERD 1126
Query: 338 CLIAHGASGNLHERL 352
C+IAHGA+ L ERL
Sbjct: 1127 CMIAHGAASFLKERL 1141
>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1277
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 142/497 (28%), Positives = 208/497 (41%), Gaps = 133/497 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N +R+DTL L YP++P
Sbjct: 789 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYASNYQLRMDTLAHVLHYPEKP 845
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDSL+MNQ++++ G+FRS ++ D
Sbjct: 846 LVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQ 905
Query: 102 K-------DIQVKS-----RPSDDML------NFGKIQSK---------SG-DIVIGKYA 133
+ D+ V S RP+ + N+ K++ SG D++IGK
Sbjct: 906 EKAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTT 965
Query: 134 EI---------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVH 178
+ D S ++ E G+V +V+L++N +G F V IR V
Sbjct: 966 PLGGGVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKVRIRN----VR 1021
Query: 179 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 212
+GDKF+S HGQKG +G E P AQL+E LG
Sbjct: 1022 VPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLG 1081
Query: 213 K-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 271
K G G ATPF T + VS L+ IG + G ++ + L
Sbjct: 1082 KVGVLTGTEGDATPFTDVT--------VANVSSTLHKIGFQKHGNEVMYSGHTGRML--- 1130
Query: 272 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F TFYQ+ H+ +DK+ R+ G LT +P+ R R GG+
Sbjct: 1131 -----------NTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRM 1179
Query: 332 GEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADD 378
GEM+ DCLI+HG + L +RL KC +A R + CR C D
Sbjct: 1180 GEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFE-CRGCKGKSD 1238
Query: 379 IIKANVPYGAKLLSQEL 395
+ + +VPY KLL QEL
Sbjct: 1239 VSQIHVPYACKLLFQEL 1255
>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
Length = 1127
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 143/502 (28%), Positives = 215/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SSILGAIASIIPYLEHNQSPRNQ----YEAA-MAKQSLGLPQSNFLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------- 92
RP+ + +G RP ED++++N+AS+E G+FRS
Sbjct: 707 RPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYE 766
Query: 93 ---------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGK------ 131
E K E+ + ++ P +D + ++ S +++IGK
Sbjct: 767 TEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + D S+ ++ E+G+V +V+++ + +G V +R+ + LG
Sbjct: 827 YTTLETERILKERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRE----LRIPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P AQLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAA 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV E + +LL +G + G ++ I
Sbjct: 943 TGNLVDATPFE----GVKEED----LRKLLLKLGYKWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF I +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGERLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ERL C+ + + P C I K V
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVTV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-IALGIYPKLE 1121
>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
13514]
gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Pyrobaculum arsenaticum DSM
13514]
Length = 1127
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 143/502 (28%), Positives = 215/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SSILGAIASIIPFLEHNQSPRNQ----YEAA-MAKQSLGLPQSNFLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------- 92
RP+ + +G RP ED++++N+AS+E G+FRS
Sbjct: 707 RPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYE 766
Query: 93 ---------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGK------ 131
E K E+ + ++ P +D + ++ S +++IGK
Sbjct: 767 TEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + D S+ ++ E+G+V +V+++ + +G V +R+ + LG
Sbjct: 827 YTTLETERILKERRDASVAVRRGEKGIVDRVIVTESPEGNKLVKVRLRE----LRIPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P AQLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAA 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV E + +LL +G + G ++ I
Sbjct: 943 TGNLVDATPFE----GVKEED----LRKLLLKLGYKWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF I +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGEKLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ERL C+ + + P C I K V
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVTV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-IALGIYPKLE 1121
>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1184
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 141/511 (27%), Positives = 211/511 (41%), Gaps = 135/511 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQ+ QA+G TN +R+DT+ L+YPQ+P
Sbjct: 701 SMILGVCGSIIPFPDHNQSPRN--TYQA-AMGKQAMGIYATNYQLRMDTMAHVLYYPQKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++++Q++++ G+FRS
Sbjct: 758 LVTTRAMEHLQFRSLPAGINAIVAIACYSGFNQEDSVILSQSAVDRGLFRSLFFRTFRDE 817
Query: 93 ---------ESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKS----GDIVIGKYAEIG--- 136
E+++ + I K D + G + + DI++GK +G
Sbjct: 818 ERRRLGGAQETFEVPNPKECIGTKRGAYDKLEEDGLVAEGTRVSGDDILVGKTCPLGRMA 877
Query: 137 ---------------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 175
D S ++ TE G+V KV+L++N+ G F V IR
Sbjct: 878 ANGEEDETWKAYSQTLGGKTKKDASTSMRSTETGVVDKVMLAANEAGARFVKVRIRS--- 934
Query: 176 MVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEA 209
V +GDKFSS HGQKG +G T QL+E
Sbjct: 935 -VRVPQVGDKFSSRHGQKGTVGITYGQEDLPFNVDGIVPDIIINPHAIPSRMTIGQLIEC 993
Query: 210 ALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCL 268
GK A G ATPF T + E +SQ L +G ++ G ++ + L
Sbjct: 994 LQGKVSAIAGREGDATPFTWVT---VDE-----ISQQLKTLGYQSRGWELMYNGFTGRPL 1045
Query: 269 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG
Sbjct: 1046 --------------EAHIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRAREGG 1091
Query: 329 IEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPY------CRICNSA 376
+ FGEM+ DC+I+HGA+ L ERL + +V N+ + CR C +
Sbjct: 1092 LRFGEMERDCMISHGAAFFLKERLMDESDAYRIHVCNLCGLIAIADLKRNTFECRSCRNK 1151
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
+I + +PY KLL QEL +MGI + T
Sbjct: 1152 TEISQVFIPYACKLLFQEL-MAMGIAPRIVT 1181
>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
50818]
Length = 1193
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 140/508 (27%), Positives = 218/508 (42%), Gaps = 133/508 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TTN +IR+DTL L+YPQ+P
Sbjct: 718 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYTTNFHIRLDTLAHVLYYPQQP 774
Query: 62 LF------WILISDCLG--------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L ++ D EDS++MN+ +++ G+FRS SY +
Sbjct: 775 LVKTRSMDYMYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAVDRGLFRSVFYRSYASS 834
Query: 99 VDN--KDIQVKSRPSDDML------NFGKIQSKS----------GDIVIGKYAEIGA--- 137
+N +++ +PS + N+GK++ D +IG+ E+
Sbjct: 835 EENTGREVIKFEKPSRETCAGMRNSNYGKLEDDGLIAPGTSVTGDDAIIGRTMELPPNAE 894
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D S+ L+ +E G++ +V+++ G F + +R + +GDK
Sbjct: 895 ARDSRLARFEKLDKSVFLRASENGIIDQVMVAMGPKGTRFVKIRVRS----IRVPQIGDK 950
Query: 186 FSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-DG 218
F+S HGQKG G E P L+E LGK C +G
Sbjct: 951 FASRHGQKGTCGMQYSQEDMPFTCQGITPDIIVNPHAIPSRMTIGHLIECLLGKVGCLEG 1010
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF T V+++ + + A N F Y L+ F
Sbjct: 1011 AFGDATPFIEVT-----------VNEVASALEAHN------FHKYGNEVLYN------GF 1047
Query: 279 ICL-VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+++ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1048 TGRKMQAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTKQPVEGRSRDGGLRFGEMERD 1107
Query: 338 CLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHG++ L ERL C +AN+ + + C+ C++ + +
Sbjct: 1108 CMIAHGSAQFLRERLFEVSDPYRIHVCDICGLICIANLNKNELE---CKACSNTTRVSQV 1164
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQLS 410
+PY KLL QEL SM I + T S
Sbjct: 1165 RIPYACKLLFQEL-MSMCIAPRIMTDNS 1191
>gi|402591318|gb|EJW85248.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 641
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 211/503 (41%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 168 AMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVYTTNFHVRMDTLAHVLYYPQKP 224
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MNQ+ ++ G+FRS Y+
Sbjct: 225 LVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQ 284
Query: 97 -AEVDNKDIQVKSRPSDDMLN------FGKIQSK---------SG-DIVIGKY-----AE 134
A +DN + ++ +P+ D + + K+ SG D++IGK E
Sbjct: 285 EANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTE 344
Query: 135 IGADHSIK----------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D +IK L+ +E G+V +V+L+ N DG F + +R V +GD
Sbjct: 345 DDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRS----VRLPQIGD 400
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + E P L+E GK A
Sbjct: 401 KFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANK 460
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ + L
Sbjct: 461 GEIGDATPFNDTV-------NVQKISNLLQEYGYHLRGNEIMYNGHTGRKL--------- 504
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+F T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+ D
Sbjct: 505 -----TVQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERD 559
Query: 338 CLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 560 CQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANL---RTNSFECKACRNKTQVSAF 616
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 617 RIPYACKLLFQEL-MSMSIAPRL 638
>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
11548]
gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Pyrobaculum calidifontis JCM
11548]
Length = 1127
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 147/502 (29%), Positives = 216/502 (43%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SAILGAIASIIPYLEHNQSPRNQ----YEAA-MAKQSLGLPQSNFLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYK 96
RP+ + +G RP ED++++N+AS+E G+FRS +Y+
Sbjct: 707 RPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYE 766
Query: 97 AE-----------VDNKDIQVK--------SRPSDDMLNFGKIQSKSGDIVIGK------ 131
E ++ D VK S +D + ++ S +++IGK
Sbjct: 767 TEEQKYPGGEEDRIEVPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + D S+ ++ E+G+V +V+++ + +G V +R+ + LG
Sbjct: 827 YTTLETERILKERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRE----LRIPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P QLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVGQLLESIAGKVGAA 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV E + +LL +G R G ++ I
Sbjct: 943 TGQLVDATPFE----GVGEED----LRKLLLKLGFRWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF I +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGEKLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL---KCKNVANV---------IQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ERL K V V + P C I K V
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYLDAKTNKPRCPIHGDTGQFAKVVV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-MALGIYPKLE 1121
>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
Length = 1127
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 212/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P N ++D+ L+YP+
Sbjct: 652 SSILGAIASIIPYLEHNQSPRNQ----YEA-AMAKQSLGLPQANIMYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA-- 97
RP+ + +G +P ED+++MN++S+E G RS Y+
Sbjct: 707 RPIVTTRGLELIGYSRKPAGQNAVVALLTYTGYNIEDAIIMNKSSVERGFMRSNFYRTYE 766
Query: 98 --------------EVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGKYA---- 133
EV + + P +D + ++ G+++IGK A
Sbjct: 767 TEEQKYPGGEEDRIEVPDPSARGYRGPEAYGHLDEDGIAPPEVYVSGGEVIIGKTAPPRF 826
Query: 134 ----------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
+ D SI ++ E+G+V +V+++ + +G V +R+ + LG
Sbjct: 827 YMTLETEKILKERRDASIPVRRGEKGIVDRVVITESPEGNKLVKVRLRE----LRVPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P QLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGAM 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV +S + +LL +G R G ++ I
Sbjct: 943 VGRLIDATPFE----GV----PESELRELLMKLGYRWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF I +YQ+ HM DK+ R+ G Q LT +P R R GG+ GEM+
Sbjct: 982 TGEKLVAD-IFIGIVYYQKLHHMVADKIHARSRGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL---KCKNVANV---------IQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ER+ K V V + P C I K V
Sbjct: 1041 DVLIAHGASALLYERMVESSDKYVMYVCELCGLPAYLDAKTNRPKCPIHGETGQFAKVVV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL S+GI K +
Sbjct: 1101 PYAFKLLLQEL-ISLGIYPKLE 1121
>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1141
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 209/500 (41%), Gaps = 136/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 672 ALILGICASTIPFPDHNQSPRN--TYQS-AMGKQAMGIYATNFLLRMDTLSNILFYPQKP 728
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 729 LVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQ 788
Query: 102 KDIQVKSRPSDDM---------------LNFGKIQSKS----------GDIVIGKYAEI- 135
+ + SRP + LN+ K+ D++IGK I
Sbjct: 789 ESM---SRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPIL 845
Query: 136 -------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V V+++ N DG F+ V +R +
Sbjct: 846 DPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSG----RIPQM 900
Query: 183 GDKFSSMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GA 215
GDKF+S H QKG +G L Q T L+E LGK A
Sbjct: 901 GDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSA 960
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF+ T I+ + +S+ G + G+ ++ L
Sbjct: 961 MSGEEGDATPFSGVTVDGISSRLKSY--------GFQQRGLEVMYNGMTGRKL------- 1005
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1006 -------RAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1058
Query: 336 CDCLIAHGASGNLHERLKCKNVANVIQRVV---------GGPY---CRICNSADDIIKAN 383
DC+I+HGAS L ERL +V++ V GG C+ CN+ ++
Sbjct: 1059 RDCIISHGASAFLKERL--MDVSDAYSCYVCDFCGLLAMGGSKVNECKGCNNTTNVSMVE 1116
Query: 384 VPYGAKLLSQELSFSMGITL 403
+PY KLL QEL MG+ +
Sbjct: 1117 IPYAFKLLIQEL---MGMNI 1133
>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
[Encephalitozoon cuniculi]
Length = 1141
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 209/500 (41%), Gaps = 136/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 672 ALILGICASTIPFPDHNQSPRN--TYQS-AMGKQAMGIYATNFLLRMDTLSNILFYPQKP 728
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 729 LVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQ 788
Query: 102 KDIQVKSRPSDDM---------------LNFGKIQSKS----------GDIVIGKYAEI- 135
+ + SRP + LN+ K+ D++IGK I
Sbjct: 789 ESM---SRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPIL 845
Query: 136 -------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V V+++ N DG F+ V +R +
Sbjct: 846 DPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSG----RIPQM 900
Query: 183 GDKFSSMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GA 215
GDKF+S H QKG +G L Q T L+E LGK A
Sbjct: 901 GDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSA 960
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF+ T I+ + +S+ G + G+ ++ L
Sbjct: 961 MSGEEGDATPFSGVTVDGISSRLKSY--------GFQQRGLEVMYNGMTGRKL------- 1005
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1006 -------RAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1058
Query: 336 CDCLIAHGASGNLHERLKCKNVANVIQRVV---------GGPY---CRICNSADDIIKAN 383
DC+I+HGAS L ERL +V++ V GG C+ CN+ ++
Sbjct: 1059 RDCIISHGASAFLKERL--MDVSDAYSCYVCDFCGLLAMGGSKVNECKGCNNTTNVSMVE 1116
Query: 384 VPYGAKLLSQELSFSMGITL 403
+PY KLL QEL MG+ +
Sbjct: 1117 IPYAFKLLIQEL---MGMNI 1133
>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
Length = 1233
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/505 (27%), Positives = 208/505 (41%), Gaps = 134/505 (26%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN R+DTL L+YPQ
Sbjct: 761 SMILGILGSIIPFPDHNQSPRN----TYQS-AMGKQAMGVYITNFQQRMDTLAHVLYYPQ 815
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
RPL + L EDS++MNQ++++ G+FRS Y+
Sbjct: 816 RPLVTTQPMEYLRFGELPAGQNAVVAIACYSGYNQEDSVIMNQSAIDRGLFRSVFYRTYS 875
Query: 100 DN----------------KDIQVKSRPS------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
D+ +D + S DD + ++ DI+IGK +
Sbjct: 876 DHERKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVSGSDIIIGKTVPLPE 935
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ E G+V V+++++ +G F + +R +V +GD
Sbjct: 936 ESAKQKTSRQTRLDMSTPLRSNENGIVDTVVVTTDSEGFKFVKIKVR----VVRIPQIGD 991
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKG G T QL+E LGK +
Sbjct: 992 KFSSRHGQKGTCGITYRQEDLPFTREGIVPDIIVNPHAIPSRMTVGQLIECLLGKISSLS 1051
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ + ++ S++L+ +G + +F + L
Sbjct: 1052 GNEGDATPF--------TDANVNYFSEMLHSLGYQKRANEVMFNGHTGRKL--------- 1094
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1095 -----EAQIFIGPTYYQRLKHMVDDKIHSRARGPLQNLTRQPVEGRARDGGLRFGEMERD 1149
Query: 338 CLIAHGASGNLHERL---------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HG++ L ERL AN+ Q+ C C++ +
Sbjct: 1150 CMISHGSAAWLKERLFQVSDEYRVHICNVCGMMATANIKQQQFK---CDACDNKTSFSQV 1206
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY KL+ QEL +M + ++ T
Sbjct: 1207 FIPYAFKLMIQEL-MAMNLAVRIIT 1230
>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
Length = 1171
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 209/503 (41%), Gaps = 134/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN N+R+DT+ L YPQ+P
Sbjct: 699 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYATNFNMRIDTMAHVLNYPQKP 755
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MN +S++ G RS +SY A+
Sbjct: 756 LVGTRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMAD 815
Query: 99 VDNKDIQVKSR---PS-----------------DDMLNFGKIQSKSGDIVIGKYAEIG-- 136
+ QV PS D ++N G + DI+IGK + I
Sbjct: 816 EKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPG-TRVHGDDILIGKVSPIPNQ 874
Query: 137 ------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ LK + G+V +V+LS N G F + +R + +GD
Sbjct: 875 TDEEGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVR----TLRVPTIGD 930
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P L+E LGK G
Sbjct: 931 KFASRHGQKGTMGISYRQEDMPFTQFGVVPDIIMNPHAVPSRMTIGHLVECLLGKVGLLS 990
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF+ T I + L+ +G + G ++ + L
Sbjct: 991 GEEGDATPFSQVTVHEIMAR--------LHELGFQRQGREVMYNGHTGLRL--------- 1033
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM EDK+ R G Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1034 -----PAKIFIGPTYYQRLKHMVEDKIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERD 1088
Query: 338 CLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HGA+ L ERL C N +AN+ + CR C ++ I +
Sbjct: 1089 CMISHGAAKFLKERLFDISDAYRVHVCDNCGMFAIANLYKNHY---ECRACKNS-TISQV 1144
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
++PY KLL QEL +M I K
Sbjct: 1145 HIPYACKLLFQEL-MTMSIMPKL 1166
>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
Length = 1194
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 140/515 (27%), Positives = 215/515 (41%), Gaps = 133/515 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 707 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 763
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MN ++++ G+FRS Y+
Sbjct: 764 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 823
Query: 97 -AEVDNKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEI--- 135
A +DN + ++ +P+ D +++ G ++ D++IGK +
Sbjct: 824 EANIDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPG-MRVSGDDVIIGKTVALPDI 882
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+ +E G+V +V+LS N+DG F + +R V +G
Sbjct: 883 DDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRS----VRLPQIG 938
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G + E P L+E GK A
Sbjct: 939 DKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSAN 998
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G G ++ + L
Sbjct: 999 KGEIGDATPFNDTV-------NVQKISGLLCEYGYHLRGNEVMYNGHTGKKL-------- 1043
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ IF T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+
Sbjct: 1044 ------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMER 1097
Query: 337 DCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIK 381
DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1098 DCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANL---RTNSFECKACRNKTQVSA 1154
Query: 382 ANVPYGAKLLSQELSFSMGITLKFDTQLSGVSMAA 416
+PY KLL QEL SM I + + G +A
Sbjct: 1155 VRIPYACKLLFQEL-MSMSIAPRLMVKPQGPKRSA 1188
>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
Length = 1171
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/506 (28%), Positives = 212/506 (41%), Gaps = 137/506 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 698 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 754
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MNQ+ ++ G+FRS Y+
Sbjct: 755 LVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQ 814
Query: 97 -AEVDNKDIQVKSRPSDDMLN------FGKIQSK---------SG-DIVIGKY-----AE 134
A +DN + ++ +P+ D + + K+ SG D++IGK E
Sbjct: 815 EANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTE 874
Query: 135 IGADHSIK----------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D +IK L+ +E G+V +V+L+ N DG F + +R V +GD
Sbjct: 875 DDLDATIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRS----VRLPQIGD 930
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + E P L+E GK A
Sbjct: 931 KFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANK 990
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 991 GEIGDATPFNDTV-------NVQKISNLLQEYGYHLRGNEIMYNGH-------------- 1029
Query: 278 FICLVRSL---IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
R L +F T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM
Sbjct: 1030 ---TGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEM 1086
Query: 335 KCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDI 379
+ DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1087 ERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANL---RTNSFECKACRNKTQV 1143
Query: 380 IKANVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1144 SAFRIPYACKLLFQEL-MSMSIAPRL 1168
>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
Length = 1138
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 149/503 (29%), Positives = 215/503 (42%), Gaps = 134/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG++ +IP T YQS QA+G +TN R+DTL L YPQ+P
Sbjct: 673 AIILGITASVIP--FPTHNPSPRNTYQSA-MGKQAMGIYSTNFFKRMDTLSNILCYPQKP 729
Query: 62 L----------FWILIS--DCL--------GRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L S +C+ EDS++MNQAS++ G+FRS ++ D
Sbjct: 730 LVSTKSMEYIKFKELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQ 789
Query: 102 KDIQ--------------VKSRPS----DDMLNFGKI----QSKSGDIVIGKYAEI---- 135
+ ++ V RP D + N G + Q D++IGK I
Sbjct: 790 EKMKYTGVNEKICKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKMTPILDVE 849
Query: 136 ----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D S ++ TE+G + KV++++ D G F V +R + +GDK
Sbjct: 850 KSTPGNPFYLFKDTSTLIRKTEQGNIDKVIVTTKD-GYKFTKVKVRS----MRIPQMGDK 904
Query: 186 FSSMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GACDG 218
F+S H QKGV+G L+Q T L EA LGK +G
Sbjct: 905 FASRHAQKGVVGITLKQEDMPFTSDGLIPDVIINPHAIPSRMTIGHLFEALLGKLTTLNG 964
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
+ ATPFA Q +S+ L G + G + + L
Sbjct: 965 IEGDATPFANKP------QTIDEISKELAKYGYQKRGFEIMHSGATGYKL---------- 1008
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+S IF T+YQ+ HM +DK+ R G Q +T +PV R R GG+ FGEM+ DC
Sbjct: 1009 ----KSQIFIGPTYYQRLKHMVDDKLHARARGPLQIMTRQPVEGRSREGGLRFGEMERDC 1064
Query: 339 LIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNS-------------ADDIIKANVP 385
+I+HGAS L ERL +V++V C +C++ I N+P
Sbjct: 1065 IISHGASAFLKERL--MDVSDVYT-------CGVCDNCGLICNNNCTGCNNSTISNINIP 1115
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL M I ++ TQ
Sbjct: 1116 YAFKLLIQELQ-GMNIFMRIQTQ 1137
>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
Length = 702
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 181/407 (44%), Gaps = 100/407 (24%)
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDNKDIQ---VKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY++ D + Q VK +PS D
Sbjct: 287 EDSVIMNQSSIDRGFFRSISYRSYRDEEKKQGSLVKEEFEKPSRETVMGMRHGSYDKLDD 346
Query: 113 DMLNFGKIQSKSGDIVIGKYAEI------------GADHSIKLKHTERGLVLKVLLSSND 160
D + + + D++IGK + D S LKH+E G+V +VLL++ND
Sbjct: 347 DGIAPPGTRVSAEDVIIGKTTPLPDDGNEAARRFTKRDQSTSLKHSESGMVDQVLLTTND 406
Query: 161 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 203
G F + +R V +GDKF+S HGQKG +G E P
Sbjct: 407 QGLRFVKMRVRS----VRIPQIGDKFASRHGQKGTVGITYTQEDMPFTQEGIVPDIIVNP 462
Query: 204 ---------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
L+E LGK A G ATPF T +S+ L+ G +
Sbjct: 463 HAIPSRMTIGHLIECLLGKVATHIGREGDATPFTDVT--------VDNISKALHKCGYQM 514
Query: 254 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 313
G ++ + L ++ IF T+YQ+ HM +DK+ R G Q
Sbjct: 515 RGFETMYNGHTGRKL--------------QAQIFLGPTYYQRLKHMVDDKIHSRARGPVQ 560
Query: 314 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVAN-----------VIQ 362
LT +P R + GG+ FGEM+ DC+IAHGA+ + ERL ++ A I
Sbjct: 561 ILTRQPAEGRAKDGGLRFGEMERDCMIAHGAAHFMKERLFDQSDAYRVHVCEICGLIAIA 620
Query: 363 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
+ G + CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 621 NLKKGTFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMFTR 666
>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
[Brugia malayi]
Length = 1185
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/506 (28%), Positives = 212/506 (41%), Gaps = 137/506 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 712 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 768
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MNQ+ ++ G+FRS Y+
Sbjct: 769 LVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQ 828
Query: 97 -AEVDNKDIQVKSRPSDDMLN------FGKIQSK---------SG-DIVIGKY-----AE 134
A +DN + ++ +P+ D + + K+ SG D++IGK E
Sbjct: 829 EANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTE 888
Query: 135 IGADHSIK----------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D +IK L+ +E G+V +V+L+ N DG F + +R V +GD
Sbjct: 889 DDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRS----VRLPQIGD 944
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + E P L+E GK A
Sbjct: 945 KFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANK 1004
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 1005 GEIGDATPFNDTV-------NVQKISNLLQEYGYHLRGNEIMYNGH-------------- 1043
Query: 278 FICLVRSL---IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
R L +F T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM
Sbjct: 1044 ---TGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEM 1100
Query: 335 KCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDI 379
+ DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1101 ERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANL---RTNSFECKACRNKTQV 1157
Query: 380 IKANVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1158 SAFRIPYACKLLFQEL-MSMSIAPRL 1182
>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 151/505 (29%), Positives = 213/505 (42%), Gaps = 134/505 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 714 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGVYASNFNMRMDTTAHVLFYPQKP 770
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++M+++++E G FRS SYKA
Sbjct: 771 LVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 830
Query: 99 VDNKD-----IQVKSRP-------------SDDMLNFGKIQSKSGDIVIGKYAEIGA--- 137
+ K ++ R +D ++ G I GDI++GK I
Sbjct: 831 EEKKREGQEMFEIPDRKVCHVKRADYTKLDTDGLIKPG-IPVIGGDIIVGKTIPIPESMR 889
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + E+G+V +V+L+ N G F V IR + +GD
Sbjct: 890 EDTTLTNTRILKRDCSISSRTAEKGVVDRVMLTEN-KGNRFTKVRIR----TIKIPNIGD 944
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-D 217
KF S HGQKG G F ++ T A L+E GK AC
Sbjct: 945 KFCSPHGQKGTNGIQFRQEDLPFNNDGISPDLIINPHAIPSRMTVAHLIETLAGKVACFK 1004
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN--SGITFIFKHYFLFCLFECPMD 274
G YATPF + V+ E ++QL LN G +G T + P+D
Sbjct: 1005 GGEVYATPFCS----VVVEDFGKALTQLNLNRYGNERLYNGHTGL------------PLD 1048
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGEM
Sbjct: 1049 ---------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEM 1099
Query: 335 KCDCLIAHGASGNLHERL------KCKNVANVIQRVVGGPY------CRICNSADDIIKA 382
+ DC++++GAS L ERL +V NV + C+ C++ I +
Sbjct: 1100 ERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQNVYKCQGCDNDSHIAQV 1159
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1160 LMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 1155
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 188/435 (43%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 721 AMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNYNVRMDTMSNILYYPQKP 777
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 778 LAKTQSMEFLKFRELPAGQNCIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQ 837
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD L ++ DI+IGK I
Sbjct: 838 ERRNGISIVEEFEKPNRSNTLGFKVGTYEKLDDDGLVAPGVRVSGDDIIIGKTVPIPPDT 897
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ E G+V +V+L++N +G F V +R + +GD
Sbjct: 898 EELGQRTKYHTKRDASTPLRSAESGIVDQVMLTTNAEGLKFVKVRMRTT----KVPQIGD 953
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 954 KFASRHGQKGTIGMTYRHEDMPFTAEGIVPDIIINPHCIPSRMTVAHLVECLLSKVAALR 1013
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS+LL G ++ G ++ + L
Sbjct: 1014 GYEGDATPF--------TDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLM-------- 1057
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ I+ T+YQ+ HM +DK+ R G +Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1058 ------AQIYLGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERD 1111
Query: 338 CLIAHGASGNLHERL 352
C+IAHG +G L ERL
Sbjct: 1112 CMIAHGVAGFLKERL 1126
>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 152/504 (30%), Positives = 210/504 (41%), Gaps = 132/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 714 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGVYASNFNMRMDTTAHVLFYPQKP 770
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++M+++++E G FRS SYKA
Sbjct: 771 LVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 830
Query: 99 -------------VDNKDIQVKSRPSDDMLNFGKIQSK----SGDIVIGKYAEIGA---- 137
D K VK + G I+ GDI++GK I
Sbjct: 831 EEKKREGQEMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPIPESMRE 890
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D SI + E+G+V +V+L+ N G F V IR + +GDK
Sbjct: 891 DTTLTNTRILKRDCSISSRTAEKGVVDRVMLTEN-KGNRFTKVRIR----TIKIPNIGDK 945
Query: 186 FSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-DG 218
F S HGQKG G F ++ T A L+E GK AC G
Sbjct: 946 FCSRHGQKGTNGIQFRQEDLPFNNDGISPDLIINPHAIPSRMTVAHLIETLAGKVACFKG 1005
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN--SGITFIFKHYFLFCLFECPMDW 275
YATPF + V+ E ++QL LN G +G T + P+D
Sbjct: 1006 GEVYATPFCS----VVVEDFGKALTQLNLNRYGNERLYNGHTGL------------PLD- 1048
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGEM+
Sbjct: 1049 --------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEME 1100
Query: 336 CDCLIAHGASGNLHERL------KCKNVANVIQRVVGGPY------CRICNSADDIIKAN 383
DC++++GAS L ERL +V NV + C+ C++ I +
Sbjct: 1101 RDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQNVYKCQGCDNDSHIAQVL 1160
Query: 384 VPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1161 MPYACKLLFQEL-MSMAILPRLGT 1183
>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
queenslandica]
Length = 1175
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 209/505 (41%), Gaps = 125/505 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 700 AMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVYITNYHVRMDTLAHVLYYPQKP 756
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN ++++ G+FRS SYK E
Sbjct: 757 LVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKDE 816
Query: 99 VDNKDI---QVKSRPSDD----MLN--FGKIQSKS----------GDIVIGKYAEI---- 135
+ +V +P+ D M N + K+ D +IGK +
Sbjct: 817 ESKRGFDQEEVFEKPTRDTCAGMRNAAYDKLDEDGIIAPGLRVSGNDAIIGKTISLPEND 876
Query: 136 ----GA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GA D S L+ +E G++ +V+LS N DG F + +R V +GD
Sbjct: 877 DELEGAPKRYQKRDASTFLRASETGIIDQVMLSLNQDGYKFCKIRVRS----VRVPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 933 KFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S+LLN G ++ + L
Sbjct: 993 GEIGDATPFNDAV-------NVQKISELLNEYNYHLRGNEVLYNGHTGRKL--------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1037 -----NTQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERLKCKNVANVIQRV------------VGGPYCRICNSADDIIKANVP 385
C IAHGA+ LHERL + A I CR C + I + +P
Sbjct: 1092 CQIAHGAAQFLHERLYTVSDAYKIHLCNLCGLIAIANLQTNSFECRGCKNKTQISQIEIP 1151
Query: 386 YGAKLLSQELSFSMGITLKFDTQLS 410
Y KLL QEL SM I + T S
Sbjct: 1152 YACKLLFQEL-MSMSIAPRIMTASS 1175
>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1196
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 214/517 (41%), Gaps = 148/517 (28%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N +R+DT+ L YPQ+P
Sbjct: 711 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYASNYQVRMDTMAHVLHYPQKP 767
Query: 62 L---------------------FWILISDCLGRPEDSLVMNQASLECGVFRSESYKAEVD 100
L I+I + EDSL+MNQ++++ G+FRS Y+ D
Sbjct: 768 LCTTRAMEFLHFRELPSGVNVVVAIMIYTGYNQ-EDSLIMNQSAIDRGLFRSSYYRCYND 826
Query: 101 NK-----------DIQVKSRPSDDML------NFGKIQSK---------SG-DIVIGKYA 133
+ + + RP+ D ++GK+ SG D++IGK A
Sbjct: 827 QEKSSSVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTA 886
Query: 134 EIGA-----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
+ A D S +K E G+V VL+S+ +G F V IR V +
Sbjct: 887 PMDAIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRN----VRIPQV 942
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G E P AQL+E LGK A
Sbjct: 943 GDKFASRHGQKGTIGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQLIECILGKVAV 1002
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T+ H +S+ L+ +G + G +++ + L
Sbjct: 1003 FQGCEGDATPF--------TDVHVDDISKRLHAMGYQRHGNEAMYQGHTGRPL------- 1047
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ +F TFYQ+ H+ +DKV R G LT +P+ R R GG+ GEM+
Sbjct: 1048 -------NARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRARDGGLRMGEME 1100
Query: 336 CDCLIAHGASGNLHERLKCKNVANVIQ-----------------------RVVGGPYCRI 372
DCLI HG + + +R C + I VG PY +I
Sbjct: 1101 RDCLITHGCANFIRDRFFCNSDQYRIHICERCGLTAQSNLKKMTYECRTPTCVGLPY-KI 1159
Query: 373 CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C + +PY KLL QEL SM I+ + T++
Sbjct: 1160 C-------QVEIPYACKLLFQELQ-SMCISPRIYTEV 1188
>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1141
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 143/500 (28%), Positives = 209/500 (41%), Gaps = 136/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 672 ALILGICASTIPFPDHNQSPRN--TYQS-AMGKQAMGIYATNFLLRMDTLSNILFYPQKP 728
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 729 LVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSVIMNQSAIDRGLFRSFFYRTYTDQ 788
Query: 102 KDIQVKSRPSDDM---------------LNFGKIQSKS----------GDIVIGKYAEI- 135
+ + SRP + LN+ K+ D++IGK I
Sbjct: 789 ESM---SRPGVNEEFCKPNRGSVLRMKNLNYNKLDDDGLINPGTRVTGDDVLIGKITPIL 845
Query: 136 -------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V V+++ N DG F+ V +R +
Sbjct: 846 DPERSTKETPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSG----RIPQM 900
Query: 183 GDKFSSMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GA 215
GDKF+S H QKG +G L Q T L+E LGK A
Sbjct: 901 GDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGKVSA 960
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF +G + E +S L G + G+ ++ L
Sbjct: 961 MSGEEGDATPF---SGMSVNE-----ISARLKSYGFQQRGLEVMYNGMTGRKL------- 1005
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1006 -------RAQIFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1058
Query: 336 CDCLIAHGASGNLHERL-------KCK--NVANVIQRVVGGPY---CRICNSADDIIKAN 383
DC+I+HGAS L ERL C N+ ++ +GG C+ C++ ++
Sbjct: 1059 RDCIISHGASAFLKERLMDVSDAYSCYVCNICGLL--AMGGSKVNECKGCSNTTNVSIVE 1116
Query: 384 VPYGAKLLSQELSFSMGITL 403
+PY KLL QEL MG+ +
Sbjct: 1117 IPYAFKLLIQEL---MGMNI 1133
>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
Length = 1143
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 140/504 (27%), Positives = 206/504 (40%), Gaps = 136/504 (26%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ +IP + + YQS QA+G TN +R+DTL LFYPQ+PL
Sbjct: 677 ILGICASVIPFPDHNQSPRN--TYQSA-MVKQAMGIYATNFMLRMDTLSNILFYPQKPLV 733
Query: 64 W-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
+ I+ G EDS++MNQ++++ G+FRS Y+ D ++
Sbjct: 734 TTKSMEYIRFKELPPGQNAIVAIASYTGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQEN 793
Query: 104 IQVKSRPSDDM---------------LNFGKIQSKS----------GDIVIGKYAEI--- 135
+RP LN+ K+ + D++IGK + I
Sbjct: 794 T---TRPGTHEEFCKPLRSEVIRMRNLNYSKLDNDGIIPTGTRVTGDDVLIGKVSPILDP 850
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S ++ TE G V V+++ N +G FA V +R +GD
Sbjct: 851 ERSTKGNPVYLKKDSSTSMRRTEDGFVDSVIVT-NKEGYKFAKVKVRS----CRIPQMGD 905
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKG-ACD 217
KF+S H QKG +G E P L+E +GK A
Sbjct: 906 KFASRHAQKGTVGITLNQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLMGKTCALT 965
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I+E+ + + Q G ++ L
Sbjct: 966 GEEGDATPFNGVTVDNISEKLKEYNYQ--------QRGFEVMYNGMTGHKL--------- 1008
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1009 -----RAQIYIGPTYYQRLKHMVDDKIHARAKGPLQILTRQPVEGRSRDGGLRFGEMERD 1063
Query: 338 CLIAHGASGNLHERLK-------------CKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C+I+HGAS L ERL C +A +R C+ CN+ ++ +
Sbjct: 1064 CIISHGASAFLKERLMDVSDPYTCCICDLCGLIAIDTKRY---NECKGCNNRTNLSLVEI 1120
Query: 385 PYGAKLLSQELSFSMGITLKFDTQ 408
PY KLL QEL M I + T+
Sbjct: 1121 PYAFKLLIQEL-MGMNIAPRIKTE 1143
>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
Length = 1207
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 211/504 (41%), Gaps = 133/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 721 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 777
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MN ++++ G+FRS Y+
Sbjct: 778 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 837
Query: 97 -AEVDNKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEI--- 135
A +DN + ++ +P+ D +++ G ++ D++IGK +
Sbjct: 838 EANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPG-MRVSGDDVIIGKTVALPDI 896
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+ +E G+V +V+LS N+DG F + +R V +G
Sbjct: 897 DDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRS----VRLPQIG 952
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G + E P L+E GK A
Sbjct: 953 DKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSAN 1012
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G G ++ + L
Sbjct: 1013 KGEIGDATPFNDTV-------NVQKISGLLCEYGYHLRGNEVMYNGHTGKKL-------- 1057
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ IF T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+
Sbjct: 1058 ------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMER 1111
Query: 337 DCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIK 381
DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1112 DCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANL---RTNSFECKACRNKTQVSA 1168
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1169 VRIPYACKLLFQEL-MSMSIAPRL 1191
>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1185
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 216/503 (42%), Gaps = 129/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 712 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKP 768
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKA- 97
L ++ C EDS++M+++++E G FRS S+KA
Sbjct: 769 LVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAK 828
Query: 98 ------------EVDNKDI-QVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGA--- 137
E N+++ +VK S+ D L ++ GD+V+GK +
Sbjct: 829 EERQKRDALETFENPNREVCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADL 888
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + TE+G+V KV+L+ N + FA V IR + +GD
Sbjct: 889 DKLTTGNTKITKRDASITSRTTEKGVVEKVMLTMNSSDR-FAKVKIR----TIKIPNIGD 943
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-D 217
KF S HGQKG G F ++ T A L+E GK AC
Sbjct: 944 KFCSRHGQKGTNGIQFRQEDMPFNRDGVVPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1003
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G YATPF + V+ + + L+ +G++ G ++ + P+D
Sbjct: 1004 GGEVYATPFCS----VVVDD----FGKALHALGSQRYGNECLYNGHTGL-----PLD--- 1047
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
LIF TFYQ+ H+S DK+ R G QPL +P R GG+ FGEM+ D
Sbjct: 1048 ------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERD 1101
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
C++++GAS L ERL C + V + C+ C + I + +
Sbjct: 1102 CMLSYGASQWLRERLFRVSDYYTVHVCNHCGTIC-VADTKLNRYQCKGCENDTRISQVLM 1160
Query: 385 PYGAKLLSQELSFSMGITLKFDT 407
PY KLL QEL SM I + T
Sbjct: 1161 PYACKLLFQEL-MSMTILPRLGT 1182
>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
4184]
gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
4184]
Length = 1127
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 140/502 (27%), Positives = 216/502 (43%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SAILGAVASIIPYLEHNQSPRNQ----YEAA-MAKQSLGLPQSNFLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------- 92
RP+ + +G +P ED++++N+A++E G+FRS
Sbjct: 707 RPIVTTRGLELIGYSKKPAGQNAVVALLTYTGYNMEDAIILNKAAVERGMFRSVFYRTYE 766
Query: 93 ---------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGK------ 131
E K EV + ++ P +D + ++ S +++IGK
Sbjct: 767 TEEQKYPGGEEDKIEVPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVIIGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + D S+ ++ E+G+V +V+++ + +G V +R+ + LG
Sbjct: 827 YTTLETERILKERRDSSVAVRRGEKGIVDRVIITESPEGNRLVKVRLRE----LRIPELG 882
Query: 184 DKFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GAC 216
DKF+S HGQKGV+G F E+ T QLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVVGMILRHEDMPFTEEGIVPDIIVNPHALPSRMTVGQLLESIAGKIGAS 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF GV E+ + +LL +G + G ++ I
Sbjct: 943 LGALVDATPFE----GVKEEE----LRKLLMKLGYKWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF + +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGEKLVAD-IFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ERL C+ + + P C I K V
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDARTNKPRCPIHGDTGQFAKVIV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAFKLLLQEL-IALGIYPKLE 1121
>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
Length = 704
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 182/433 (42%), Gaps = 111/433 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 199 SMILGVCGSIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 255
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 256 LVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 315
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ +K RP+ DD L + D++IGK +
Sbjct: 316 EKRQGTLIKEEFERPNRENTTGMRHGSYDELDDDGLAPPGTRVSGEDVIIGKTTPLPQDD 375
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D S L+H+E G++ +VLL++N DG F + +R + +GDKF
Sbjct: 376 NASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRS----IRIPQIGDKF 431
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQK +G E P QL+E +GK A G
Sbjct: 432 SSRHGQKCTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 491
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF +T I S+ L+ G + G ++ + L
Sbjct: 492 EGDATPFTDATVDNI--------SKALHKCGYQMRGFEVMYNGHTGRRL----------- 532
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 533 ---SAHIFLGPTYYQRLKHMMDDKIHSRGRGPVQILTRQPAEGRSRVGGLRFGEMERDCM 589
Query: 340 IAHGASGNLHERL 352
IAHGA+ L ERL
Sbjct: 590 IAHGAAHFLKERL 602
>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
Length = 1195
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 213/510 (41%), Gaps = 133/510 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 705 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 761
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MN ++++ G+FRS Y+
Sbjct: 762 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 821
Query: 97 -AEVDNKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEI--- 135
A +DN + ++ +P+ D +++ G ++ D++IGK +
Sbjct: 822 EANLDNANEELIEKPTREKCSGMRHALYDKLDEDGIISPG-MRVSGDDVIIGKTVALPDI 880
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+ +E G+V +V+LS N+DG F + +R V +G
Sbjct: 881 DDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRS----VRLPQIG 936
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G + E P L+E GK A
Sbjct: 937 DKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSAN 996
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G G ++ + L
Sbjct: 997 KGEIGDATPFNDTV-------NVQKISGLLCEYGYHLRGNEVMYNGHTGKKL-------- 1041
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ IF T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+
Sbjct: 1042 ------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMER 1095
Query: 337 DCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIK 381
DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1096 DCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANL---RTNSFECKACRNKTQVSA 1152
Query: 382 ANVPYGAKLLSQEL-SFSMGITLKFDTQLS 410
+PY KLL QEL S S+ L Q S
Sbjct: 1153 VRIPYACKLLFQELMSMSIAPRLMVKPQTS 1182
>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma vivax
Y486]
Length = 1186
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 150/509 (29%), Positives = 211/509 (41%), Gaps = 142/509 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 714 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHILFYPQKP 770
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L ++ C EDS++M+++++E G FRS SYKA
Sbjct: 771 LVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 830
Query: 99 VDNKD-----IQVKSRP-------------SDDMLNFGKIQSKSGDIVIGKYAEIGA--- 137
+NK +V R +D ++ G + GDI++GK I
Sbjct: 831 EENKKEGKEVFEVPDRKICHVKRADYSKLDTDGLIKPG-MPVMGGDILVGKTVPIPESMR 889
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + E+G+V KV+L+ N G F V +R + +GD
Sbjct: 890 ENATTANTRIMKRDCSISSRTAEKGVVDKVMLTEN-KGNRFTKVKVR----TIKIPNIGD 944
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-D 217
KF S HGQKG G F ++ T A L+E GK AC
Sbjct: 945 KFCSRHGQKGTNGIQFRQEDMPFNSDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1004
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE----CPM 273
G YATPF + V+ E + Q L C Y CL+ P+
Sbjct: 1005 GGEVYATPFCS----VVVEDFGKALQQ-LKC------------HRYGNECLYNGHTGLPL 1047
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGE
Sbjct: 1048 E---------HLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGE 1098
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNV--ANVIQRVVGGPYCRICNSADD 378
M+ DC++++GAS L ERL C + A+ Q V C+ C++
Sbjct: 1099 MERDCMLSYGASQWLRERLFRVSDYYAVHVCNMCGTICAADTEQNVYN---CQGCDNDAR 1155
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDT 407
I +PY KLL QEL SM I + T
Sbjct: 1156 ISHVLMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
Length = 1182
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 215/501 (42%), Gaps = 127/501 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 705 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPQKP 761
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN ++++ G++RS SY+ +
Sbjct: 762 LVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQ 821
Query: 99 VDNKDIQVKS---RPSDDML------NFGK----------IQSKSGDIVIGKYAEI---- 135
K + + +P+ D + ++ K I+ D+++GK +
Sbjct: 822 ESKKGLDQEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDND 881
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 882 DELEGTARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKFTKIKVRS----VRVPQIGD 937
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 938 KFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANK 997
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +SQLLN G G ++ + L
Sbjct: 998 GEIGDATPFNDAV-------NVQKISQLLNDYGYHLRGNEVLYSGFTGRKL--------- 1041
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1042 -----NTQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRDGGLRFGEMERD 1096
Query: 338 CLIAHGASGNLHERL-------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANV 384
C+IAHG++ L+ERL C +V N+ I + + CR C + + + +
Sbjct: 1097 CMIAHGSAQFLNERLFEVSDPYSC-HVCNLCGLIAIANLRNNTFECRGCKNKTQVSRIRM 1155
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY AKLL QEL SM I +
Sbjct: 1156 PYAAKLLFQEL-MSMSIAPRM 1175
>gi|40644720|emb|CAD92662.1| RNA polymerase II [Solanum lycopersicum]
Length = 396
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 163/388 (42%), Gaps = 108/388 (27%)
Query: 47 RVDTLLQQLFYPQRPLFW------------------ILISDCLG--RPEDSLVMNQASLE 86
R+DTL L+YPQ+PL I+ C EDS++MNQ+S++
Sbjct: 4 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSID 63
Query: 87 CGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNFGKIQSKS 124
G FRS SY+ E VK RP DD L +
Sbjct: 64 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSG 123
Query: 125 GDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 171
D++IGK I DHS L+H+E G+V +VLL++N DG F V +R
Sbjct: 124 EDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVR 183
Query: 172 QSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQ 205
V +GDKFSS HGQKG +G E P Q
Sbjct: 184 S----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 239
Query: 206 LLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYF 264
L+E +GK A G ATPF T +S+ L+ G + G ++ +
Sbjct: 240 LIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHT 291
Query: 265 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 324
L ++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 292 GRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 337
Query: 325 RFGGIEFGEMKCDCLIAHGASGNLHERL 352
R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 338 RDGGLRFGEMERDCMIAHGAAHFLKERL 365
>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
Length = 1193
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 210/504 (41%), Gaps = 133/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 707 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 763
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MN ++++ G+FRS Y+
Sbjct: 764 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 823
Query: 97 -AEVDNKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEI--- 135
A +DN + ++ +P+ D +++ G ++ D++IGK +
Sbjct: 824 EANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPG-MRVSGDDVIIGKTVALPDI 882
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+ +E G+V +V+LS N DG F + +R V +G
Sbjct: 883 DDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRS----VRLPQIG 938
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G + E P L+E GK A
Sbjct: 939 DKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSAN 998
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G G ++ + L
Sbjct: 999 KGEIGDATPFNDTV-------NVQKISGLLCEYGYHLRGNEVMYNGHTGKKL-------- 1043
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ IF T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+
Sbjct: 1044 ------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMER 1097
Query: 337 DCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIK 381
DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1098 DCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANL---RTNSFECKACRNKTQVSA 1154
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1155 VRIPYACKLLFQEL-MSMSIAPRL 1177
>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei]
gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1190
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 150/504 (29%), Positives = 210/504 (41%), Gaps = 132/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 718 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKP 774
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++M+++++E G FRS SYKA
Sbjct: 775 LVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 834
Query: 99 -------------VDNKDIQVKSRPSDDMLNFGKIQSK----SGDIVIGKYAEI------ 135
D K VK + G I+ GDI++GK +
Sbjct: 835 EEKKREGREMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSE 894
Query: 136 ----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D SI + E+G+V +V+L+ N G F V IR + +GDK
Sbjct: 895 ESPVSDTRILKRDCSISSRAAEKGVVDRVMLTEN-KGNRFTKVRIR----TIKIPNIGDK 949
Query: 186 FSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-DG 218
F S HGQKG G F ++ T A L+E GK AC G
Sbjct: 950 FCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKG 1009
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN--SGITFIFKHYFLFCLFECPMDW 275
YATPF + V+ E ++QL LN G +G T + P+D
Sbjct: 1010 GEVYATPFCS----VVVEDFGKALTQLKLNRYGNERLYNGHTGL------------PLD- 1052
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGEM+
Sbjct: 1053 --------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEME 1104
Query: 336 CDCLIAHGASGNLHERL------KCKNVANVIQRVVGGPY------CRICNSADDIIKAN 383
DC++++GAS L ERL +V N+ + C+ C++ I +
Sbjct: 1105 RDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAADTDQNLYKCQGCDNDSHISQVL 1164
Query: 384 VPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1165 MPYACKLLFQEL-MSMAILPRLGT 1187
>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
bisporus H97]
Length = 1183
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 189/435 (43%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS + QA+G TN IR+DT+ L+YPQ+P
Sbjct: 747 SMILGICASIIPFPDHNQSPRN--TYQS-AMAKQAMGIYLTNFLIRMDTMANILYYPQKP 803
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 804 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 863
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 864 EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDS 923
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 924 EELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRAT----RIPQIGD 979
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 980 KFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLI 1039
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 1040 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL--------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 -----QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 1137
Query: 338 CLIAHGASGNLHERL 352
C+I+HG +G L ERL
Sbjct: 1138 CMISHGIAGFLKERL 1152
>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
gambiense DAL972]
Length = 1189
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 150/504 (29%), Positives = 210/504 (41%), Gaps = 132/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 717 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKP 773
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++M+++++E G FRS SYKA
Sbjct: 774 LVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 833
Query: 99 -------------VDNKDIQVKSRPSDDMLNFGKIQSK----SGDIVIGKYAEIGA---- 137
D K VK + G I+ GDI++GK +
Sbjct: 834 EEKKREGREMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSE 893
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D SI + E+G+V +V+L+ N G F V IR + +GDK
Sbjct: 894 GSPVSDTRILKRDCSISSRAAEKGVVDRVMLTEN-KGNRFTKVRIR----TIKIPNIGDK 948
Query: 186 FSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-DG 218
F S HGQKG G F ++ T A L+E GK AC G
Sbjct: 949 FCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKG 1008
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN--SGITFIFKHYFLFCLFECPMDW 275
YATPF + V+ E ++QL LN G +G T + P+D
Sbjct: 1009 GEVYATPFCS----VVVEDFGKALTQLKLNRYGNERLYNGHTGL------------PLD- 1051
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
LIF T+YQ+ H+S DK+ R G QPL +P R GG+ FGEM+
Sbjct: 1052 --------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEME 1103
Query: 336 CDCLIAHGASGNLHERL------KCKNVANVIQRVVGGPY------CRICNSADDIIKAN 383
DC++++GAS L ERL +V N+ + C+ C++ I +
Sbjct: 1104 RDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAADTDQNLYKCQGCDNDSHISQVL 1163
Query: 384 VPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1164 MPYACKLLFQEL-MSMAILPRLGT 1186
>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
Length = 1174
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 210/484 (43%), Gaps = 94/484 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S + G+S IP + + S S Q IG TN R+DTL LFYPQ+P
Sbjct: 700 SLMFGVSASTIPFPDHNQSPRNCY---SASQSKQTIGVYLTNFQQRMDTLSSVLFYPQKP 756
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C G EDS++M+Q++++ G+FRS +Y +
Sbjct: 757 LVTTRAMEHLHYRELPAGQNAIVAIACHGGYNQEDSILMSQSAIDRGLFRSFFFRTYTEQ 816
Query: 99 VDN------KDIQVKSRPSDDML----NFGKIQSK---------SGD-IVIGKYAEIGAD 138
V ++I+ K P D ++ N+ K+ + SGD I++GK I D
Sbjct: 817 VKKVGALELEEIE-KPNPRDTLIRRGNNYEKLDADGLVPPGTRVSGDDILVGKTVPIPVD 875
Query: 139 H---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
S ++ TE G+V +VLL++ND + + V V +G
Sbjct: 876 SEELGQRTARHVKRDSSATMRSTEYGVVDQVLLTTND----LDLKMCKTRVRSVKIPQVG 931
Query: 184 DKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVS 243
DK S HGQKGVLG L + L A G + +A P + G +I + +S
Sbjct: 932 DKHCSRHGQKGVLGMLYRQ-EDLPYTADGIVPDVIINPHAIPSRMTIGHLI----ECLLS 986
Query: 244 QLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFY 293
++ G G F + L +C F L + + IF TFY
Sbjct: 987 KVSALTGDEGDGTPFTDVTVEDISNALAKCGYQKRGFEVLYNGQTGQKLAANIFIGPTFY 1046
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL- 352
Q+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D ++AHGA+ L ERL
Sbjct: 1047 QRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMEHDVIVAHGAAMFLKERLF 1106
Query: 353 KCKNVANV----------IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
+ V I + Y CRIC++ I + ++PY KLL QEL SM I
Sbjct: 1107 DVSDAFRVHVCDLCGLMCIANLSKNSYECRICHNKTQISQIHLPYATKLLFQEL-MSMNI 1165
Query: 402 TLKF 405
+
Sbjct: 1166 APRI 1169
>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1212
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 145/512 (28%), Positives = 213/512 (41%), Gaps = 140/512 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N +R+DT+ L YPQ+P
Sbjct: 727 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYASNYQVRMDTMAHVLHYPQKP 783
Query: 62 L----------FWILIS--DCL--------GRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L S +C+ EDSL++NQ++++ G+FRS Y+ +D
Sbjct: 784 LCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSSYYRCYIDQ 843
Query: 102 KDI-----------QVKSRPSDDML------NFGKIQSK---------SG-DIVIGKYAE 134
+ ++ +PS D +GK+ SG D++IGK A
Sbjct: 844 EKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKTAP 903
Query: 135 IGA-----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
I A D S +K E G+V VL+S+ +G F V IR V + +G
Sbjct: 904 IDATAGMPSRYSKRDCSTSMKANEHGIVDNVLISTTKEGYRFTKVRIRN----VRTPQIG 959
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK---- 213
DKF+S HGQKG +G E P AQL+E LGK
Sbjct: 960 DKFASRHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVVVF 1019
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
C+G ATPF T +S L+ +G + G +++ + L
Sbjct: 1020 QGCEG---DATPFTDVT--------VEDISTRLHAMGYQRHGNEALYQGHTGRPL----- 1063
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ +F TFYQ+ H+ +DKV R G LT +P+ R R GG+ GE
Sbjct: 1064 ---------NARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGE 1114
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG----GPYCRICNSA 376
M+ DCLI HG + + +R +C A + + P C
Sbjct: 1115 MERDCLITHGCANFMRDRFFVNSDQYRIHICERCGLTAQANLKKMTYECRSPMC--VGRP 1172
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
I + +PY AKLL QEL+ SM I + T+
Sbjct: 1173 TQICQVEIPYAAKLLLQELN-SMCIQTRIYTK 1203
>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
Length = 1166
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 208/487 (42%), Gaps = 122/487 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +L + IIP + + YQS QA+G TN ++R+DTL L+YPQRP
Sbjct: 693 SMILSICASIIPFPDHNQSPRN--TYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQRP 749
Query: 62 LFWIL-------------ISDCLG-------RPEDSLVMNQASLECGVFRSESYKA---- 97
L I+ +G EDS++MN+ S+E G+FRS Y++
Sbjct: 750 LVQTRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAAS 809
Query: 98 -EVDNKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI----- 135
+ +I +PS DD + I+ D ++G+ E+
Sbjct: 810 EHSERGEIIKIDKPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEATR 869
Query: 136 --------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D S+ L+ +E G++ V++S N G+ F + +R V + +GDKF+
Sbjct: 870 QASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRS----VRTPQIGDKFA 925
Query: 188 SMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-DGLM 220
S HGQKG G E P L+E LGK A G +
Sbjct: 926 SRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASHSGTI 985
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF T+ + + V+ +L + G ++ + +
Sbjct: 986 GDATPF--------TKVNVTDVADILEGYNFQRYGNEVMYNGFTGRKM------------ 1025
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++ +F T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ DC+I
Sbjct: 1026 --QAQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMEGRSRDGGLRFGEMERDCMI 1083
Query: 341 AHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVPYGA 388
AHGA+ L ERL +V +V + ++ + C C ++ + + +PY
Sbjct: 1084 AHGAAQFLRERLFEVSDPYSLHVCDVCGLPCVAKLEKNEFECTRCRNSTRVSRIRLPYAC 1143
Query: 389 KLLSQEL 395
KLL QEL
Sbjct: 1144 KLLFQEL 1150
>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 942
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 187/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DT+ L+YPQ+P
Sbjct: 523 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYLTNFLIRMDTMANILYYPQKP 579
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 580 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 639
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+++K D + + G I +G DI+IGK A I D
Sbjct: 640 EKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDS 699
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 700 EELGQRTQTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRST----RIPQIGD 755
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 756 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLI 815
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 816 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL--------- 858
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 859 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 913
Query: 338 CLIAHGASGNLHERL 352
C+I+HG +G L ERL
Sbjct: 914 CMISHGIAGFLKERL 928
>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
V24Sta]
gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
Length = 1127
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 215/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG IIP H Q+ Q Y++ + Q++G P +N ++D+ L+YP+
Sbjct: 652 SSILGAVGSIIPYLEHNQSPRNQ----YEAA-MAKQSLGLPQSNFLYKLDSRGHMLYYPE 706
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------- 92
RP+ + +G RP ED++++N+AS+E G+FRS
Sbjct: 707 RPIVTTRGLELVGYSRRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYE 766
Query: 93 ---------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGK------ 131
E K E+ + ++ P +D + ++ S ++++GK
Sbjct: 767 TEEQKYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLVGKTSPPRF 826
Query: 132 YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
Y + A D S+ ++ E+G+V +V+++ + +G V +R+ + LG
Sbjct: 827 YTTLEAERILKERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRE----LRVPELG 882
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKGV+G L E P AQLLE+ GK GA
Sbjct: 883 DKFASRHGQKGVVGMLLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAS 942
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + AT F GV E + +LL +G + G ++ I
Sbjct: 943 LGALVDATAFE----GVKEED----LRKLLLKLGYKWDGKEVMYS-------------GI 981
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
LV IF + +YQ+ HM DK+ R G Q LT +P R R GG+ GEM+
Sbjct: 982 TGERLVAD-IFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040
Query: 337 DCLIAHGASGNLHERL----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANV 384
D LIAHGAS L+ERL C+ + + P C I K V
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVVV 1100
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL ++GI K +
Sbjct: 1101 PYAYKLLLQEL-IALGIYPKLE 1121
>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar SAW760]
gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
dispar SAW760]
Length = 1170
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 197/461 (42%), Gaps = 113/461 (24%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QAIG +N +R+D+L LFYPQ+PL ++ +
Sbjct: 737 QAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAEYVKFGHIPAGINAIVAVCCYSGYNQ 796
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDN------------KDIQVKSRPSDDMLNFGKI-- 120
EDS++MNQ S++ G+FRS ++K ++ K + S ++D+ + K+
Sbjct: 797 EDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDV 856
Query: 121 --------QSKSGDIVIGKYAEIG----ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVV 168
+ K DI++ + E D S++ K E G+V +V++++ G + V
Sbjct: 857 DGILAPGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRV 916
Query: 169 SIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQT 202
+R + +GDKFSS HGQKG +G T
Sbjct: 917 KMRS----IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMT 972
Query: 203 PAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK 261
QL+E LGK GA G + TPF IT ++ IG R + + +
Sbjct: 973 VGQLVECLLGKVGALVGDVQSGTPFQKD----IT----------VDKIGERLHKLKYQRR 1018
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
Y LF + SL++ T+YQ+ H+ +DKV R TG + LT +P+
Sbjct: 1019 GYE--ALFSGHTGR-----KLDSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLE 1071
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGP 368
R R GG+ GEM+ DC+I+HG S L ERL KC ++ V
Sbjct: 1072 GRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKC-HMPAVANHKACTF 1130
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C C I K ++PY KLL QEL SM + + T++
Sbjct: 1131 QCSCCKDKTHISKVDIPYACKLLFQEL-MSMAVCPRIYTEV 1170
>gi|407045039|gb|EKE42974.1| DNA-directed RNA polymerase, beta subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 1170
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 195/461 (42%), Gaps = 113/461 (24%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QAIG +N +R+D+L LFYPQ+PL ++ +
Sbjct: 737 QAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAEYVKFGHIPAGINAIVAVCCYSGYNQ 796
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDN------------KDIQVKSRPSDDMLNFGKI-- 120
EDS++MNQ S++ G+FRS ++K ++ K + S ++D+ + K+
Sbjct: 797 EDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDV 856
Query: 121 --------QSKSGDIVIGKYAEIG----ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVV 168
+ K DI++ + E D S++ K E G+V +V++++ G + V
Sbjct: 857 DGILAPGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRV 916
Query: 169 SIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQT 202
+R + +GDKFSS HGQKG +G T
Sbjct: 917 KMRS----IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMT 972
Query: 203 PAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK 261
QL+E LGK GA G + TPF ++ IG R + + +
Sbjct: 973 VGQLVECLLGKVGALVGDVQSGTPFQKDV--------------TVDRIGERLHKLKYQRR 1018
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
Y LF + SL++ T+YQ+ H+ +DKV R TG + LT +P+
Sbjct: 1019 GYE--ALFSGHTGR-----KLDSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLE 1071
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGP 368
R R GG+ GEM+ DC+I+HG S L ERL KC ++ V
Sbjct: 1072 GRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKC-HMPAVANHKACTF 1130
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C C I K ++PY KLL QEL SM + + T++
Sbjct: 1131 QCSCCKDKTHISKVDIPYACKLLFQEL-MSMAVCPRIYTEV 1170
>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica HM-1:IMSS]
gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
histolytica KU27]
Length = 1170
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/461 (27%), Positives = 197/461 (42%), Gaps = 113/461 (24%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QAIG +N +R+D+L LFYPQ+PL ++ +
Sbjct: 737 QAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAEYVKFGHIPAGINAIVAVCCYSGYNQ 796
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDN------------KDIQVKSRPSDDMLNFGKI-- 120
EDS++MNQ S++ G+FRS ++K ++ K + S ++D+ + K+
Sbjct: 797 EDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDV 856
Query: 121 --------QSKSGDIVIGKYAEIG----ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVV 168
+ K DI++ + E D S++ K E G+V +V++++ G + V
Sbjct: 857 DGILAPGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRV 916
Query: 169 SIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQT 202
+R + +GDKFSS HGQKG +G T
Sbjct: 917 KMRS----IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMT 972
Query: 203 PAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK 261
QL+E LGK GA G + TPF V ++ + + L+ + + G +F
Sbjct: 973 VGQLVECLLGKVGALVGDVQSGTPFQKD---VTVDR----IGERLHKLKYQRRGYEALFS 1025
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
+ L SL++ T+YQ+ H+ +DKV R TG + LT +P+
Sbjct: 1026 GHTGRKL--------------DSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLE 1071
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGP 368
R R GG+ GEM+ DC+I+HG S L ERL KC ++ V
Sbjct: 1072 GRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKC-HMPAVANHKACTF 1130
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
C C I K ++PY KLL QEL SM + + T++
Sbjct: 1131 QCSCCKDKTHISKVDIPYACKLLFQEL-MSMAVCPRIYTEV 1170
>gi|288561072|ref|YP_003424558.1| DNA-directed RNA polymerase subunit B' RpoB1 [Methanobrevibacter
ruminantium M1]
gi|288543782|gb|ADC47666.1| DNA-directed RNA polymerase subunit B' RpoB1 [Methanobrevibacter
ruminantium M1]
Length = 603
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 139/496 (28%), Positives = 204/496 (41%), Gaps = 138/496 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP H + TM+ + + QA+G +N +R DT L +
Sbjct: 129 STMLGICAGIIPFSDHNSSPRNTMEAGM-------TKQALGLYVSNYALRTDTRGHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ PL I D + RP ED++++N++SLE G+ RS S
Sbjct: 182 PQTPLVKTRIIDAINYDDRPSGQNLVVALMSYEGYNMEDAMILNKSSLERGMGRSSFFRS 241
Query: 95 YKA-------------EVDNKDIQ-------VKSRPSDDMLNFGKIQSKSGDIVIGK--- 131
Y+A E K ++ K+ D ++N + +SGD++IGK
Sbjct: 242 YEASERRYPGGQEDKFERPEKGVKGYRSEEAYKNLDEDGIVN-PESHVESGDVLIGKTSP 300
Query: 132 ------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
AE + S+ ++H E+G+V VLL+ +G + +R +
Sbjct: 301 PRFLGEIDEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEGSKLTKIRVRDT----RQ 356
Query: 180 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 213
GDKF+S HGQKGV+G + + P Q+LE GK
Sbjct: 357 PEFGDKFASRHGQKGVVGLILSQDDIPFTEDGVVPDIIVNPHAIPSRMSVGQVLEMVAGK 416
Query: 214 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
C +G TPF + G I + C N G+T
Sbjct: 417 AGCMEGHRMDGTPFNDNVEGEIKRALHDNGFESAGCESLYN-GVTG-------------- 461
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ + IF + +YQ+ HM+ DKV R+TG Q LT +P R R GG+ FG
Sbjct: 462 -------ERIEAEIFVGVAYYQKLHHMTTDKVYARSTGPVQVLTRQPTEGRAREGGLRFG 514
Query: 333 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 379
EM+ DCLIAHGA+ L ERL +C +A V + YC IC + +
Sbjct: 515 EMERDCLIAHGAALALKERLLDESDKYEAVVCNECGMLA-VYDKNKNKMYCPICGDS-ET 572
Query: 380 IKANVPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 573 YPVEISYAFKLLLDEL 588
>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 1222
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 202/504 (40%), Gaps = 139/504 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IP + + YQS QAIG + N R+DT+ L+YPQ+P
Sbjct: 745 SMILGVCGSFIPFPDHNQSPRN--TYQSA-MGKQAIGIYSMNFQFRMDTMAHILYYPQKP 801
Query: 62 LFWILISD------------------CLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L D C G EDS++M+Q +++ G+FRS Y++ D
Sbjct: 802 LVVTRAMDFLNYKDFPNGINAIVAIACYGGYNQEDSIIMSQDAIDRGLFRSVFYRSYKDE 861
Query: 102 KDIQVKSRPSDDMLNFGKIQS----KSG--------------------DIVIGKYA---- 133
+ I+ + ++ KI+ KSG DI+IGK
Sbjct: 862 EKIKFGGQ--KEVFETPKIKDCVGFKSGSYTKLDLDGLISEGTKVSGDDIIIGKTVPFNF 919
Query: 134 --------------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
+ D S ++ E G+V KVL+ + D G + IR V
Sbjct: 920 FEAEYNLNSSERVYKFKKDSSTSVRSFESGIVDKVLIGTTDIGTKLVKIRIRS----VRI 975
Query: 180 ACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK 213
+GDKF+S HGQKG++G L T LLE L K
Sbjct: 976 PQIGDKFASRHGQKGIVGMLYKQVDLPFTPDGIIPEIIMNPHAIPSRMTIGHLLECLLSK 1035
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
A G +PF+ + ITEQ + F + N
Sbjct: 1036 VAALGGFEGDGSPFSKISVEKITEQLEKFNYEKFGWENLANG------------------ 1077
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
A L+ + IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FG
Sbjct: 1078 ----ATGELLEAKIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRARDGGLRFG 1133
Query: 333 EMKCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSAD 377
EM+ DC+I+HGA+ L +RL ++ ++N Q + C+ C +
Sbjct: 1134 EMERDCMISHGAAVFLKDRLLDQSDAFTVFVCDFCGFIAISNHKQNIYE---CKSCKPRN 1190
Query: 378 DIIKANVPYGAKLLSQELSFSMGI 401
I + +PY KLL QEL SM I
Sbjct: 1191 SISQIKIPYACKLLFQEL-MSMAI 1213
>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 1131
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 200/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 650 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 707 QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V P D+ + +++ K GD++IGK +
Sbjct: 767 KYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 826
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 827 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRVPSIGDKFA 882
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 883 SRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNI 942
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +++ + QL N I K+ +L E D +
Sbjct: 943 VDATPF-----------YKTPIEQLQNE----------ILKYGYLPDATEVTYDGRSG-Q 980
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 981 KIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1040
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + I + C I ++ V Y
Sbjct: 1041 GFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAF 1100
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1101 KLLIQEL-MSMIISPRL 1116
>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1185
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 145/505 (28%), Positives = 211/505 (41%), Gaps = 133/505 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 712 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKP 768
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L ++ C EDS++M+++++E G FRS S+KA+
Sbjct: 769 LVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAK 828
Query: 99 -----------VDNKDIQV-------KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA--- 137
+N D +V S+ D L ++ GD+V+GK +
Sbjct: 829 EERQKRDALETFENPDREVCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADL 888
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + TE+G+V KV+L+ N++ + F V IR + +GD
Sbjct: 889 EKLTTGNTKITKRDASITSRATEKGVVDKVMLTMNNNDR-FTKVKIR----TIKIPNIGD 943
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-D 217
KF S HGQKG G F ++ T A L+E GK AC
Sbjct: 944 KFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1003
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLL--NCIGARNSGITFIFKHYFLFCLFECPMDW 275
G YATPF + + + SQ C+ ++G+ P+D
Sbjct: 1004 GGEVYATPFCSVVVDDFGKALHALRSQRYGNECLYNGHTGL---------------PLD- 1047
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
LIF TFYQ+ H+S DK+ R G QPL +P R GG+ FGEM+
Sbjct: 1048 --------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEME 1099
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
DC++++GAS L ERL C + V + C+ C + I +
Sbjct: 1100 RDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTIC-VADTKLNRYQCKGCENDTRISQV 1158
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY KLL QEL SM I + T
Sbjct: 1159 LMPYACKLLFQEL-MSMTILPRLGT 1182
>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
Length = 1307
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 186/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 880 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 936
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 937 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 996
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 997 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEA 1056
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 1057 EELGQRTKQHTKIDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1112
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1113 KFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1172
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ Y L
Sbjct: 1173 GFEGDATPFTDVTVDSI--------SSLLREHGYQSRGFEVMYNGYTGRKLV-------- 1216
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1217 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1270
Query: 338 CLIAHGASGNLHERL 352
C+IAHGAS L ERL
Sbjct: 1271 CMIAHGASAFLKERL 1285
>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
G186AR]
Length = 1307
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 186/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 880 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 936
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 937 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 996
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 997 EKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEA 1056
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 1057 EELGQRTKQHTKIDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1112
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1113 KFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1172
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S LL G ++ G ++ Y L
Sbjct: 1173 GFEGDATPFTDVTVDSI--------SSLLREHGYQSRGFEVMYNGYTGRKLV-------- 1216
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1217 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1270
Query: 338 CLIAHGASGNLHERL 352
C+IAHGAS L ERL
Sbjct: 1271 CMIAHGASAFLKERL 1285
>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
Length = 1921
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 139/502 (27%), Positives = 208/502 (41%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N + R+DTL L+YPQ+P
Sbjct: 1443 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKP 1499
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAE--- 98
L + I+ G EDS+++N+++++ G FRSE Y+
Sbjct: 1500 LVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGFFRSEFYRTYKDQ 1559
Query: 99 -----VDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYAEI---- 135
+D +++ K P DD L + D++IGK +
Sbjct: 1560 EARHGMDQEEVFEKPNPQQCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENE 1619
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ ++ +E G+V +V+++ N++G F V +R + + +GD
Sbjct: 1620 DEMEGGQRRYTKRDASVFMRRSEYGIVDQVMITWNNEGNKFCKVRVRTT----KTPQVGD 1675
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 1676 KFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 1735
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G +++G ++ + L
Sbjct: 1736 GEIGDATPFNDAV-------NVRKISLLLQEYGYQHTGNEIMYNGFTGRKL--------- 1779
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1780 -----NSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1834
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKAN 383
C IAHGA+ L ERL C +A QR Y CR C + I
Sbjct: 1835 CQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQR--NKTYECRSCKNTTQISLVK 1892
Query: 384 VPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1893 LPYACKLLFQEL-MSMSIAPRM 1913
>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.G.57.14]
gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.N.15.51]
gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
Length = 1131
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 200/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 650 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 707 QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V P D+ + +++ K GD++IGK +
Sbjct: 767 KYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 826
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 827 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRVPSIGDKFA 882
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 883 SRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNI 942
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +++ + QL N I K+ +L E D +
Sbjct: 943 VDATPF-----------YKTPIEQLQNE----------ILKYGYLPDATEVTYDGRSG-Q 980
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 981 KIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1040
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + I + C I ++ V Y
Sbjct: 1041 GFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAF 1100
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1101 KLLIQEL-MSMIISPRL 1116
>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1239
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 135/487 (27%), Positives = 204/487 (41%), Gaps = 111/487 (22%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G T+N +IR+DTL L+YPQ+P
Sbjct: 756 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYTSNHSIRMDTLAHVLYYPQKP 812
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYK--AEV 99
L D L EDS++ NQ+S++ G+FRS ++ +E
Sbjct: 813 LVCTKSMDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFRSAFFRTYSET 872
Query: 100 DNKDIQVK----------------SRPSDDMLNFGKIQSKSGDIVIGKYAEI-------- 135
KD + + D ++N G Q D++IGK I
Sbjct: 873 QEKDERFEIPDFKKCSGRKHGTYDKLDIDGLINPGN-QVSGDDVIIGKTTAIKMNENMNG 931
Query: 136 ------GADH----------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
GAD S LKH+E G + +V+L+ N+ G+ F + +R
Sbjct: 932 NANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGERFVKIKMRSE----RI 987
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQ 237
+GDKF+S HGQKG +G T Q +G L+ +A P + G +I
Sbjct: 988 PQIGDKFASRHGQKGTVGM---TYRQEDMPFTREGIVPDLIINPHAIPSRMTIGHLI--- 1041
Query: 238 HQSFVSQLLNCIGARNSGITF----------IFKHYFLFCLFECPMDWIAFICL----VR 283
+ S++ + G F C ++ + + + +
Sbjct: 1042 -ECLGSKVASLTGTEGDATPFQKVGVKDTVEQISKRLHECGYQLRGNEVMYNGFNGKKME 1100
Query: 284 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 343
+IF T+YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DC+I+HG
Sbjct: 1101 VMIFLGPTYYQRLKHMVADKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHG 1160
Query: 344 ASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGA 388
A+ L ERL C+ V N+ ++ C C + I + N+PY
Sbjct: 1161 AARFLKERLFDVSDFYRIHMCEVCGLICVGNLSEQRFE---CYNCQNTSKICQVNIPYAC 1217
Query: 389 KLLSQEL 395
KLL QEL
Sbjct: 1218 KLLMQEL 1224
>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
Length = 1185
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 210/507 (41%), Gaps = 137/507 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 712 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKP 768
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L ++ C EDS++M+++++E G FRS S+KA+
Sbjct: 769 LVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAK 828
Query: 99 VDNKD---IQVKSRPSDDM-----LNFGKIQSKS----------GDIVIGKYAEIGA--- 137
+ + ++ P ++ ++ K+ + GD+V+GK +
Sbjct: 829 EERQKRDALETFENPDRELCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADL 888
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + TE+G+V KV+L+ N++ + F V IR + +GD
Sbjct: 889 EKLTTGNTKITKRDASITSRTTEKGVVDKVMLTMNNNDR-FTKVKIR----TIKIPNIGD 943
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-D 217
KF S HGQKG G F ++ T A L+E GK AC
Sbjct: 944 KFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1003
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE----CPM 273
G YATPF + + + SQ Y CL+ P+
Sbjct: 1004 GGEVYATPFCSVVVDDFGKALHALRSQ-----------------RYGNECLYNGHTGLPL 1046
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
D LIF TFYQ+ H+S DK+ R G QPL +P R GG+ FGE
Sbjct: 1047 D---------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGE 1097
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDII 380
M+ DC++++GAS L ERL C + V + C+ C + I
Sbjct: 1098 MERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTIC-VADTKLNRYQCKGCENDTRIS 1156
Query: 381 KANVPYGAKLLSQELSFSMGITLKFDT 407
+ +PY KLL QEL SM I + T
Sbjct: 1157 QVLMPYACKLLFQEL-MSMTILPRLGT 1182
>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
Length = 1181
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 210/507 (41%), Gaps = 137/507 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N N+R+DT LFYPQ+P
Sbjct: 708 SMILGICASIIPYPNHNQSPRN--TYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKP 764
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L ++ C EDS++M+++++E G FRS S+KA+
Sbjct: 765 LVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAK 824
Query: 99 VDNKD---IQVKSRPSDDM-----LNFGKIQSKS----------GDIVIGKYAEIGA--- 137
+ + ++ P ++ ++ K+ + GD+V+GK +
Sbjct: 825 EERQKRDALETFENPDRELCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADL 884
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + TE+G+V KV+L+ N++ + F V IR + +GD
Sbjct: 885 EKLTTGNTKITKRDASITSRTTEKGVVDKVMLTMNNNDR-FTKVKIR----TIKIPNIGD 939
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGKGAC-D 217
KF S HGQKG G F ++ T A L+E GK AC
Sbjct: 940 KFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYK 999
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE----CPM 273
G YATPF + + + SQ Y CL+ P+
Sbjct: 1000 GGEVYATPFCSVVVDDFGKALHALRSQ-----------------RYGNECLYNGHTGLPL 1042
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
D LIF TFYQ+ H+S DK+ R G QPL +P R GG+ FGE
Sbjct: 1043 D---------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGE 1093
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDII 380
M+ DC++++GAS L ERL C + V + C+ C + I
Sbjct: 1094 MERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTIC-VADTKLNRYQCKGCENDTRIS 1152
Query: 381 KANVPYGAKLLSQELSFSMGITLKFDT 407
+ +PY KLL QEL SM I + T
Sbjct: 1153 QVLMPYACKLLFQEL-MSMTILPRLGT 1178
>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
Length = 1173
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 206/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 700 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 756
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKA--EV 99
L + IS G EDS+++N++S++ G FRS Y++ +
Sbjct: 757 LVTTRSMEYLRFRELPAGINAIVAISTYTGYNQEDSIIVNKSSVDRGFFRSVFYRSYKDA 816
Query: 100 DNKDI----QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+NK + RP DD L I+ D+VIGK +
Sbjct: 817 ENKSAYDQEETFERPERSFCTGMRHAIYDKLDDDGLVSPGIRVSGDDVVIGKTVMLPENE 876
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V++S N DG F + +R V +GD
Sbjct: 877 DELEGTTQRFKKRDVSTFLRTSETGIVDQVMISINQDGYKFTKIRVRS----VRVPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 933 KFASRHGQKGTCGITYRAEDMPFTSEGVQPDLIVNPHAIPSRMTIGHLIECIQGKVSANK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G + G ++ + L
Sbjct: 993 GEIGDATPFNDTV-------NVQKISNLLHEYGYQQRGNEVLYNGHTGRKL--------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 -----NTQVFFGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ CR C + I +
Sbjct: 1092 CQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAIANLRSHTFE---CRGCKNKTHISQV 1148
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1149 RMPYACKLLFQEL-MSMSIAPRM 1170
>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1158
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 140/502 (27%), Positives = 211/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N + R+DTL L+YPQ+P
Sbjct: 680 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKP 736
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS+++N+++++ G FRSE Y+ D
Sbjct: 737 LVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQ 796
Query: 102 K-----DIQ-VKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ D++ V +P+ DD L + D++IGK +
Sbjct: 797 ETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENE 856
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ ++ +E G+V +V+++ N++G F V +R + + +GD
Sbjct: 857 DEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTT----KAPQVGD 912
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 913 KFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 972
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G +++G ++ + L
Sbjct: 973 GEIGDATPFNDAV-------NVRKISLLLQEYGYQHTGNEIMYNGFTGRKL--------- 1016
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R+ G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1017 -----NSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERD 1071
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKAN 383
C IAHGA+ L ERL C +A QR Y CR C + I
Sbjct: 1072 CQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQR--NKTYECRSCKNTTQISLVK 1129
Query: 384 VPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1130 LPYACKLLFQEL-MSMSIAPRM 1150
>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1304
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 140/502 (27%), Positives = 211/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N + R+DTL L+YPQ+P
Sbjct: 826 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKP 882
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS+++N+++++ G FRSE Y+ D
Sbjct: 883 LVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQ 942
Query: 102 K-----DIQ-VKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ D++ V +P+ DD L + D++IGK +
Sbjct: 943 ETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENE 1002
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ ++ +E G+V +V+++ N++G F V +R + + +GD
Sbjct: 1003 DEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTT----KAPQVGD 1058
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 1059 KFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 1118
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G +++G ++ + L
Sbjct: 1119 GEIGDATPFNDAV-------NVRKISLLLQEYGYQHTGNEIMYNGFTGRKL--------- 1162
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R+ G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1163 -----NSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERD 1217
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKAN 383
C IAHGA+ L ERL C +A QR Y CR C + I
Sbjct: 1218 CQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQR--NKTYECRSCKNTTQISLVK 1275
Query: 384 VPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1276 LPYACKLLFQEL-MSMSIAPRM 1296
>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
Length = 1131
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 199/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 650 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 707 QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V P D+ + +++ K GD++IGK +
Sbjct: 767 KYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 826
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 827 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRIPSIGDKFA 882
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 883 SRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNI 942
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +++ + QL N I K+ +L E D
Sbjct: 943 VDATPF-----------YKTPIEQLQNE----------ILKYGYLPDATEVTYDGRTG-Q 980
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 981 KIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1040
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + I + C I ++ V Y
Sbjct: 1041 GFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAF 1100
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1101 KLLIQEL-MSMIISPRL 1116
>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.14.25]
gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.27]
gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.4]
gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
Length = 1131
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 199/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 650 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 707 QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V P D+ + +++ K GD++IGK +
Sbjct: 767 KYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 826
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 827 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRIPSIGDKFA 882
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 883 SRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNI 942
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +++ + QL N I K+ +L E D
Sbjct: 943 VDATPF-----------YKTPIEQLQNE----------ILKYGYLPDATEVTYDGRTG-Q 980
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 981 KIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1040
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + I + C I ++ V Y
Sbjct: 1041 GFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAF 1100
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1101 KLLIQEL-MSMIISPRL 1116
>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
Length = 1137
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 135/494 (27%), Positives = 217/494 (43%), Gaps = 125/494 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL- 62
+LG+ ++P + + YQS QA+G TN +R+D+L L YPQ+PL
Sbjct: 675 MLGVCASVVPFPDHNQSPRN--TYQS-AMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLV 731
Query: 63 ---------FWILISD--------CLG--RPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
F L S C EDS+VMN+ +++ G+FRS Y+ D
Sbjct: 732 ITQSMNFLQFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRT---YSD 788
Query: 104 IQVKSRPSDDM---------------LNFGKI----------QSKSGDIVIGKYAEIG-- 136
++ +++P + N+ K+ + D++IGK
Sbjct: 789 MESRTKPEEQECFMKPDRRSVQRMKNANYEKLDIDGLVPPGTRVSGEDVLIGKAVSTPDG 848
Query: 137 -ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 195
D S ++ TE G+V +V+L++ D G +A + +R + + +GDKF+S HGQKG
Sbjct: 849 YKDASTTMRGTESGVVDRVILTTKD-GYRYARIRVRSA----RTPQMGDKFASRHGQKGT 903
Query: 196 LGFL---EQTP-----------------------AQLLEAALGKGAC-DGLMSYATPFAT 228
+G + E P L+E LGK +C G ATPF
Sbjct: 904 IGIMLSPEDMPFTADGITPDIIINPHAIPSRMTIGHLVECLLGKVSCMTGKEGDATPF-- 961
Query: 229 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
TG + E +S+ L G + G ++ + + RS IF
Sbjct: 962 -TGLSVEE-----ISEELQKHGYQKRGFEVMYSGFTGRKM--------------RSQIFI 1001
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
T+YQ+ HM DK+ R G Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L
Sbjct: 1002 GPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAMFL 1061
Query: 349 HERLKCKNVANVIQRVV--------------GGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL C +V++ + + G C++C + ++ +PY KLL QE
Sbjct: 1062 KERL-C-DVSDKFEVFICNDCGLFCAGNKDRGLYLCQLCGTRTNVSMVYMPYAFKLLVQE 1119
Query: 395 -LSFSMGITLKFDT 407
++ + + ++ +T
Sbjct: 1120 MMTMCISVQMRLET 1133
>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1184
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 143/517 (27%), Positives = 211/517 (40%), Gaps = 148/517 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S + G+ IIP H Q+ YQS QA+G TN N+R+DT+ L+YPQ
Sbjct: 696 SMIFGVCASIIPFPDHNQSPRNT----YQS-AMGKQAMGMYLTNYNLRMDTMAHVLYYPQ 750
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA-- 97
+PL + + L EDSL+M+QA+++ G+FRS YK
Sbjct: 751 KPLVTTRVMEHLQFRTLPAGINAVVAIACYSGYNQEDSLIMSQAAVDRGLFRSVYYKTFK 810
Query: 98 EVDNKDI----QVKSRP------------------SDDMLNFGKIQSKSGDIVIGKYAEI 135
E + K + + S+P SD ++ G+ + + GD+++GK A +
Sbjct: 811 EEEQKKLFGQQETISKPDPAVTLGMKEAHAYSKLESDGLIGVGE-RVRGGDVLVGKTAPL 869
Query: 136 GA--------------------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 169
GA D S+ +K TERG+ KVL+ + + G V
Sbjct: 870 GASRAAVDAAEQETASGMAALSGMRTRKDCSLVMKRTERGVTDKVLICTGEAGTRMVKVR 929
Query: 170 IRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTP 203
+R + +GDKF+S HGQKG +G T
Sbjct: 930 VRTEL----IPQVGDKFASRHGQKGTMGLCMPEEDLPFNVDGIRPDIIMNPHAVPSRMTI 985
Query: 204 AQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 262
A L+EA LGK A G+ AT F T I + L G G +F
Sbjct: 986 AHLIEALLGKVCALSGVEGDATAFTPVTVDAIGRE--------LVRHGYDPRGWELLFNG 1037
Query: 263 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 322
PM+ + IF + +YQ+ H+ K+ R G+ Q LT +PV
Sbjct: 1038 Q-----TGRPMN---------AAIFMGVNYYQRLRHVVYQKLGARARGAVQVLTRQPVEG 1083
Query: 323 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV-IQRVVGGP 368
+ R GG+ GEM+ D +A+GAS L ER+ +C +A ++R +
Sbjct: 1084 KSRGGGLRIGEMEKDVFVAYGASAVLKERMCDVSDKYRVHVCERCGLIAIADLRRSIF-- 1141
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
CR C + I +PY KLL QEL SM I +
Sbjct: 1142 ECRGCKNKTRIAAVEIPYACKLLFQEL-MSMAIAPRM 1177
>gi|440296149|gb|ELP88990.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
invadens IP1]
Length = 1180
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/451 (28%), Positives = 196/451 (43%), Gaps = 111/451 (24%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWI-----------------LISDCLG---RP 74
QAIG +N +R+D+L LFYPQ+PL +++ C+
Sbjct: 749 QAIGVYASNYQLRMDSLGHVLFYPQKPLVSTKGADYAKFGEIPAGINAVVAVCVYSGYNQ 808
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKS-----RPSD--DMLNFGKIQS----- 122
EDS++MNQ S++ G+FRS +K + + ++ RP + D+ + K Q
Sbjct: 809 EDSVMMNQGSIDRGLFRSMCFKTFLKDYKKGEETDLMFFRPCEGTDLKDVSKYQHLDVDG 868
Query: 123 --------KSGDIVIGKYAEIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSI 170
++ D++IG + + + D S++ K E G+V +V++++ ++ + +
Sbjct: 869 VAPPGTKVRADDVIIGAFYKGKSGELKDCSMRYKPRENGVVDQVVVATTENRAKMIKIKM 928
Query: 171 RQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPA 204
R + +GDKFSS HGQKG +G T
Sbjct: 929 RS----IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFNIEGINPDIIMNPHAIPSRMTVG 984
Query: 205 QLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHY 263
QL+E LGK GA G + TPF G+ + +S L+ + + G +F +
Sbjct: 985 QLVECLLGKVGALVGDVQNGTPFQP---GLTVD----VISDRLHKLKYQRWGYEALFSGH 1037
Query: 264 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
L +L++ T+YQ+ H+ +DKV R TG + LT +P+ R
Sbjct: 1038 TGRKL--------------DTLVYMGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGR 1083
Query: 324 KRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYC 370
R GG+ GEM+ DC+I+HG S L ERL KC A QR C
Sbjct: 1084 SRDGGLRLGEMERDCMISHGMSALLRERLFLASDRYQVYVCDKCHMPAVANQRSSTFE-C 1142
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGI 401
C I K +PY AKLL QEL SM I
Sbjct: 1143 SCCKDRTHISKVEIPYAAKLLFQEL-MSMAI 1172
>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm3]
gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm1]
Length = 1137
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 209/481 (43%), Gaps = 124/481 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL- 62
+LG+ ++P + + YQS QA+G TN +R+D+L L YPQ+PL
Sbjct: 675 MLGVCASVVPFPDHNQSPRN--TYQSA-MGKQAMGMYATNFLMRMDSLSNVLCYPQKPLV 731
Query: 63 ---------FWILISD--------CLG--RPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
F L S C EDS+VMN+ +++ G+FRS Y+ D
Sbjct: 732 ITQSMNFLRFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRT---YSD 788
Query: 104 IQVKSRPSDDM---------------LNFGKI----------QSKSGDIVIGKYAEIG-- 136
++ +++P + N+ K+ + D++IGK
Sbjct: 789 MESRTKPEEQECFMKPDRRSVQRMKNANYEKLDMDGLVPPGTRVSGEDVLIGKTVSTPDG 848
Query: 137 -ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 195
D S ++ TE G+V +V+L++ D G +A + +R + + +GDKF+S HGQKG
Sbjct: 849 YKDASTTMRGTESGVVDRVILTTKD-GYRYARIRVRSA----RTPQMGDKFASRHGQKGT 903
Query: 196 LGFL---EQTP-----------------------AQLLEAALGKGAC-DGLMSYATPFAT 228
+G + E P L+E LGK +C G ATPF
Sbjct: 904 IGIMLSPEDMPFTADGITPDIIINPHAIPSRMTIGHLVECLLGKVSCMSGKEGDATPF-- 961
Query: 229 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
TG + E +S+ L G + G ++ + + RS IF
Sbjct: 962 -TGLSVEE-----ISEELQKHGYQKRGFEVMYSGFTGRKM--------------RSQIFI 1001
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
T+YQ+ HM DK+ R G Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L
Sbjct: 1002 GPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAATFL 1061
Query: 349 HERLKCKNVANVIQRVV--------------GGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL C +V++ + + G C++C + + +PY KLL QE
Sbjct: 1062 KERL-C-DVSDKFEVFICNDCGVFCAGNKERGLYLCQLCGTRTSVSMVYMPYAFKLLVQE 1119
Query: 395 L 395
+
Sbjct: 1120 M 1120
>gi|336121473|ref|YP_004576248.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
okinawensis IH1]
gi|334855994|gb|AEH06470.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
okinawensis IH1]
Length = 611
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 138/507 (27%), Positives = 211/507 (41%), Gaps = 136/507 (26%)
Query: 4 LLGLSCGIIP----SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+LG+ G+ P + +TM + Q++G P +N +R+DT L YPQ
Sbjct: 132 ILGIGAGVAPYPEHNSAPRITMAAAM-------GKQSLGIPMSNLKLRMDTKGHLLHYPQ 184
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA-- 97
P+ + LG RP ED+ + N+AS+E G+ RS +++
Sbjct: 185 VPIVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIFNKASIERGLGRSSFFRSYE 244
Query: 98 ---------EVDNKDIQVKS----RPSDDMLNFG-----KIQS--KSGDIVIGKYA---- 133
++D ++ + R + N G +++S KSGD++IGK +
Sbjct: 245 GFEKRYPGGQLDRFEVPEQGVRGYRAEEAYRNLGDDGIVEVESEVKSGDVIIGKTSPPRF 304
Query: 134 ----EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
+I D S+ ++H E G+V V+LS +G A + +R V L
Sbjct: 305 LEEQDISLRTKSQRRDTSVTVRHGEGGIVDSVILSETKEGNRLAKIRVRD----VRIPEL 360
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGV+G + P + + D +++ +A P + G
Sbjct: 361 GDKFASRHGQKGVIGLI--VPQEDMPFTENGVFPDLIINPHAIPSRMTIG---------- 408
Query: 242 VSQLLNCIGA--------RNSGITFI---------------FKHYFLFCLFECPMDWIAF 278
Q+L IG R G F FKH+ +++
Sbjct: 409 --QVLEMIGGKVGALECRRVDGTIFSGEKEWDLRETLEKYGFKHHGKEVMYDGKTGK--- 463
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ IF I +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D
Sbjct: 464 --KLECEIFVGIAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDV 521
Query: 339 LIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADD------I 379
LI HGA+ L ERL KC +A + G YC +C +D I
Sbjct: 522 LIGHGAALLLKERLFDESDPYECYICSKCGEIA-IYDHKRGIKYCPVCGETEDIQSNRKI 580
Query: 380 IKANVPYGAKLLSQELSFSMGITLKFD 406
N+PY KLL EL SMGI K +
Sbjct: 581 PPVNLPYAFKLLLDELR-SMGINPKME 606
>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
L.S.2.15]
gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
Length = 1131
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 135/497 (27%), Positives = 199/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 650 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 707 QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V P D+ + +++ K GD++IGK +
Sbjct: 767 KYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 826
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 827 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRVPSIGDKFA 882
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 883 SRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNI 942
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATP +++ + QL N I K+ +L E D +
Sbjct: 943 VDATPI-----------YKTPIEQLQNE----------ILKYGYLPDATEVTYDGRSG-Q 980
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 981 KIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1040
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + I + C I ++ V Y
Sbjct: 1041 GFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAF 1100
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1101 KLLIQEL-MSMIISPRL 1116
>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
Length = 1196
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 139/502 (27%), Positives = 211/502 (42%), Gaps = 129/502 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N + R+DTL L+YPQ+P
Sbjct: 718 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKP 774
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS+++N+++++ G FRSE Y+ D
Sbjct: 775 LVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQ 834
Query: 102 K-----DIQ-VKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ D++ V +P+ DD L + D++IGK +
Sbjct: 835 ETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENE 894
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ ++ +E G+V +V+++ N++G F V +R + + +GD
Sbjct: 895 DEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTT----KAPQVGD 950
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 951 KFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 1010
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G +++G ++ + L
Sbjct: 1011 GEIGDATPFNDAV-------NVRKISLLLQEYGYQHTGNEIMYNGFTGRKL--------- 1054
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ ++ G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1055 -----NSQIFLGPTYYQRLKHMVDDKIHSQSRGPVQILNRQPMEGRSRDGGLRFGEMERD 1109
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKAN 383
C IAHGA+ L ERL C +A QR Y CR C + I
Sbjct: 1110 CQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQR--NKTYECRSCKNTTQISLVK 1167
Query: 384 VPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1168 LPYACKLLFQEL-MSMSIAPRM 1188
>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
magnipapillata]
Length = 1184
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 138/500 (27%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 706 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 762
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L D L EDS+++N +++ G++RS Y++ D
Sbjct: 763 LVTTRSMDFLKFRELPAGINSIVAIASYTGYNQEDSVLLNASAINRGLYRSVFYRSYRDE 822
Query: 101 ---------------NKDIQVKSRPS--DDMLNFGKIQSKS----GDIVIGKYAEIGADH 139
N+D R + D + + G I S D++IGK + D
Sbjct: 823 ESRKGLDQEEKFEKPNRDETTGMRAAIYDKLDDDGLIPPGSRVSGDDVIIGKTVTLPDDE 882
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ +E G+V +V+L+ N++G F + +R V +GD
Sbjct: 883 DETDSQAKHFKKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRS----VRIPQIGD 938
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 939 KFASRHGQKGTCGITYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANK 998
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + VS LL G G ++ + L
Sbjct: 999 GEIGDATPFNDAV-------NVQLVSSLLQEYGYHLRGNEVLYNGFTGRKL--------- 1042
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ D
Sbjct: 1043 -----NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGLRFGEMERD 1097
Query: 338 CLIAHGASGNLHERL-KCKNVANV----------IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L+ERL + + V I + + CR C + + + +P
Sbjct: 1098 CQIAHGAAQFLNERLFEASDAYRVHVCNLCGLIAIANLRNNTFECRSCKNKTQVSQIRIP 1157
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1158 YACKLLFQEL-MSMSIAPRM 1176
>gi|115454339|ref|NP_001050770.1| Os03g0646800 [Oryza sativa Japonica Group]
gi|113549241|dbj|BAF12684.1| Os03g0646800, partial [Oryza sativa Japonica Group]
Length = 368
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 155/353 (43%), Gaps = 85/353 (24%)
Query: 111 SDDMLNFGKIQSKSGDIVIGKYAEI-------------GADHSIKLKHTERGLVLKVLLS 157
DD L + D++IGK + I DHS L+H+E G+V +VLL+
Sbjct: 35 DDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLT 94
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------- 203
+N DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 95 TNADGLRFVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDII 150
Query: 204 ------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 250
QL+E +GK A G ATPF T +S+ L+ G
Sbjct: 151 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCG 202
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
+ G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 203 YQMRGFETMYNGHTGRKLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRG 248
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK-- 355
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL KC
Sbjct: 249 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 308
Query: 356 NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
+AN+ + CR C + DI++ ++PY KLL QEL +M I + TQ
Sbjct: 309 AIANLKKNSF---ECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTQ 357
>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
11486]
gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
subunit B' [Thermosphaera aggregans DSM 11486]
Length = 1163
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 133/498 (26%), Positives = 205/498 (41%), Gaps = 126/498 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + +YQ+ + Q++G + N R+DT L YPQ+PL
Sbjct: 687 ILGITASIIPYPEHNQSPRN--MYQAAM-AKQSLGLYSANFQKRMDTRGHFLHYPQKPLV 743
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSE--------SY 95
+ +G RP ED+L+MN++S + G+ RS Y
Sbjct: 744 QTRSMEVIGYNERPAGQNMVVAVLTFTGYNIEDALIMNKSSADRGLARSTFFRLYSTVEY 803
Query: 96 KAEVDNKD--------------IQVKSRPSDDMLNFGKIQSKSGDIVIGKYAE------- 134
K +D ++ + +D + + Q GD+++GK +
Sbjct: 804 KYMGGQQDEIVIPPTNIRGYRGLRAYEKLEEDGIVAPETQVAGGDVLVGKISPPRFLGAQ 863
Query: 135 ---IGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
+GA D S+ ++H E+G+V VL++++++G V +R + LGDKF
Sbjct: 864 EYMLGAGLTKQDTSVVMRHEEKGIVDTVLITTDNEGNKLVKVRVRD----LRIPELGDKF 919
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGL 219
+S HGQKGVLG L T QL+E+ GK A +G
Sbjct: 920 ASRHGQKGVLGLLVPQYDMPFTEDGVVPDLVINPHAFPSRMTVGQLIESIAGKVAALEGR 979
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
+ ATPF H++ V L + +H +L E D
Sbjct: 980 VVDATPF-----------HKTPVKDLE----------IVLKRHRYLPSGEEVMYDGRTG- 1017
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++ S +F I +YQ+ HM DKV R G Q LT +P R R GG+ +GEM+ DCL
Sbjct: 1018 EMISSPVFIGIVYYQKLHHMVSDKVHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCL 1077
Query: 340 IAHGASGNLHER-LKCKNVANV-----------IQRVVGGPYCRICNSADDIIKANVPYG 387
+ HG S L E L ++ V R G C I + + Y
Sbjct: 1078 VGHGTSLLLRETILDRSDITRVYVCEICGHIGWYDRNKGKYLCPIHKEKGSLKPVEISYA 1137
Query: 388 AKLLSQELSFSMGITLKF 405
KLL QEL S G+ +
Sbjct: 1138 FKLLLQEL-MSFGVKPRL 1154
>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
Length = 1152
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 186/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 725 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 781
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 782 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 841
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 842 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPES 901
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S++++ F V +R + +GD
Sbjct: 902 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTT----KIPQIGD 957
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 958 KFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1017
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1018 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1061
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1062 ------AQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1115
Query: 338 CLIAHGASGNLHERL 352
C+IAHGAS L ERL
Sbjct: 1116 CMIAHGASAFLKERL 1130
>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
GT1]
gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
VEG]
Length = 1259
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 135/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + +YQS QA+G T++ N R+DTL L+YPQ+P
Sbjct: 775 SLILGVCASIIPFPDHNQSPRN--VYQS-AMGKQAMGVYTSSFNHRMDTLAHLLYYPQKP 831
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA---- 97
L + L EDSL+M+Q+S++ G+FRS Y+
Sbjct: 832 LVCTRAMEFLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSE 891
Query: 98 EVDNKDIQVKS--RPSDDML------NFGKIQSKS----------GDIVIGK-------- 131
E + V+S PS + + ++ K+ + D++IGK
Sbjct: 892 ERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPLFDDD 951
Query: 132 -----------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 174
+A+ D S+ L+ +E G+V +V+LS N+ G F V +R SV
Sbjct: 952 TGMPGGAGAGPGGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNNRGSRFTKVKVR-SV 1010
Query: 175 NMVHSACLGDKFSSMHGQKGVLGFLEQTP--------------------------AQLLE 208
+ + GDKF+S HGQKG +G +T L+E
Sbjct: 1011 RIPQT---GDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVE 1067
Query: 209 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 267
LGK A G ATPF G + + +S L+ +G G ++ +
Sbjct: 1068 CLLGKTAAIFGGEGDATPF---NGYAVLD-----ISNRLHSLGYERFGNERLYHGHTGRH 1119
Query: 268 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 327
L SLIF T+YQ+ HM +DK+ R G LT +P+ + R G
Sbjct: 1120 L--------------PSLIFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREG 1165
Query: 328 GIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRV------------VGGPYCRICNS 375
G+ FGEM+ DC+I+HGA+ L ERL ++ A + G C++C++
Sbjct: 1166 GLRFGEMERDCMISHGAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDN 1225
Query: 376 ADDIIKANVPYGAKLLSQEL 395
I + +PY KLL QEL
Sbjct: 1226 KSRISQICIPYACKLLLQEL 1245
>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
Silveira]
Length = 1205
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 186/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK A
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPES 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S++++ F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL 352
C+IAHGAS L ERL
Sbjct: 1169 CMIAHGASAFLKERL 1183
>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
Length = 1160
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 209/485 (43%), Gaps = 95/485 (19%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIGF N R+DTL L YPQRP+
Sbjct: 688 ILGAVAGLIPFPHHNQSPRN--TYQCA-MGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMV 744
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLECGVFRSESYKAEVD--- 100
+++S ED+LV+N+AS + G R + +K
Sbjct: 745 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKYTTELL 804
Query: 101 ---------------NKDIQVKSRPS---DDMLNFGKIQSKSGDIVIGKYA-------EI 135
++D + K R + +D L ++ K GDI+I K I
Sbjct: 805 QYPNRNKDRLGGVQRDEDGKAKDRHAVLDNDGLATPGMKMKDGDIMIMKETPVDQTSTNI 864
Query: 136 GADHSI--------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
G D I K + +V KV++++ + G V RQ+ LGDKFS
Sbjct: 865 GEDRKITEFRPCPISYKIKDPAIVDKVVITTKESGTPLLKVRTRQT----RRPELGDKFS 920
Query: 188 SMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITEQH 238
S HGQKGV+G + E P + + M+ F TG V+ +
Sbjct: 921 SRHGQKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGRR 980
Query: 239 Q-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
+ +F S + +G G ++ K YF + P + + +F
Sbjct: 981 EYGFGDAFRSHPVEEMGKVLIEHGFSWEGKDYFTSGITGEPHE---------AYLFNGPI 1031
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
FYQ+ HM DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ER
Sbjct: 1032 FYQRLKHMVADKMHSRSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLER 1091
Query: 352 LKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLK 404
L + +V +R ++G YC+ C + ++ K N+PY AKLL QEL S ++G+ ++
Sbjct: 1092 LMYSSDVTKVDVCERCGLMGYKGYCQTCKTTSNVTKMNMPYAAKLLLQELISMNVGVRMQ 1151
Query: 405 FDTQL 409
+ Q
Sbjct: 1152 LEDQF 1156
>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Strongylocentrotus purpuratus]
Length = 1142
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 136/496 (27%), Positives = 201/496 (40%), Gaps = 136/496 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 667 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPQKP 723
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS+++N ++++ G FRS Y++
Sbjct: 724 LTTTRSMEYLRFRELPAGINSVVAIASYTGYNQEDSVILNASAIDRGFFRSVFYRS---Y 780
Query: 102 KDIQVKSRPSDDMLNFGKIQSKSG--DIVIGKYAEIG----------------------- 136
KD + K+ D+M ++ G + V K E G
Sbjct: 781 KDAESKAVDKDEMFEKPSRETCQGMRNAVYDKLEEDGIIPPGSRVSGNRDFXICVNXYVX 840
Query: 137 ---------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
D S ++ TE G++ +V++S N DG F + +R V +
Sbjct: 841 RPFKALEGTSRRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRS----VRTPQ 896
Query: 182 LGDKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG G +E P L+E GK
Sbjct: 897 IGDKFASRHGQKGTCGIKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVS 956
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
+ G + ATPF S + +S LL+ G G + LFC F
Sbjct: 957 SSKGEIGDATPFNDSV-------NVQKISNLLHEYGYHQRG------NEVLFCGFTGRK- 1002
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM
Sbjct: 1003 -------IGTQVFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEM 1055
Query: 335 KCDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDI 379
+ DC I+HGA+ L ERL C +AN+ CR C + I
Sbjct: 1056 ERDCQISHGAAQFLRERLFEVSDPYRVHVCNFCGLIAIANLRNNTFE---CRGCKNKTQI 1112
Query: 380 IKANVPYGAKLLSQEL 395
+ +PY KLL QEL
Sbjct: 1113 SQVRLPYACKLLFQEL 1128
>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
Length = 1168
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 140/505 (27%), Positives = 205/505 (40%), Gaps = 137/505 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+ G++ IP + + YQ+ + QA+G N IR DT L YP++PL
Sbjct: 674 IFGVTASTIPYAEHNQSPRN--TYQAAM-AKQALGLYAANFQIRADTRGHLLHYPEKPLV 730
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP ED+++MN++S++ G+ RS E
Sbjct: 731 QTRALDIIGFNNRPAGQNMVVAVLSFTGYNIEDAIIMNKSSIDRGLARSTFFRLYATEER 790
Query: 96 KAEVDNKD--------------IQVKS----------RPSD-DMLNFGKIQSKSGDIVIG 130
K KD I +KS R D D + +++ +SG+++IG
Sbjct: 791 KYSGGQKDLLGCIDDPQRRPGCIDIKSIIDAKPPIAYRKLDIDGIVSPEVEVESGEVLIG 850
Query: 131 KYA---------------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 175
K A E D S+ ++H ERG V V ++ ++G F +V +R V
Sbjct: 851 KTAPPKFSEEFREIAVSTERRRDESVSVRHGERGTVDTVFITETNEG--FKLVKVR--VR 906
Query: 176 MVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGV 233
+ GDKF+S HGQKGV+GFL + Y PF T +
Sbjct: 907 DLRIPEFGDKFASRHGQKGVIGFL-------------------VPQYDMPFTEDGITPDL 947
Query: 234 ITEQH----QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL-------- 281
I H + + QLL I + + ++ F F+ P++ + L
Sbjct: 948 IINPHAFPSRMTLGQLLETIAGKVAALSARLIDATPF--FKEPVENLQLELLKYGFSPDG 1005
Query: 282 ------------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
+R +F I +YQ+ HM DK+ R TG Q LT +P R R GG+
Sbjct: 1006 TEIMYDGRTGEMLRHPVFIGIVYYQKLHHMVADKIHARATGQTQLLTRQPTEGRARGGGL 1065
Query: 330 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSA 376
FGEM+ DCL+ HGA+ L ER+ C ++A R C I
Sbjct: 1066 RFGEMERDCLVGHGAAMLLRERMLESSDKYVMYVCELCGHIA-WFDRNRRAFVCPIHKEE 1124
Query: 377 DDIIKANVPYGAKLLSQELSFSMGI 401
I VPY KLL QEL SMGI
Sbjct: 1125 GKISIVVVPYAFKLLLQEL-MSMGI 1148
>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis KIN4/I]
gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
KIN4/I]
Length = 1132
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 129/481 (26%), Positives = 199/481 (41%), Gaps = 134/481 (27%)
Query: 27 YQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP--------- 74
YQS + QA+G N +R DT L YP++PL + +G RP
Sbjct: 675 YQSA-MAKQALGLYAANFMLRTDTRGYLLHYPEKPLAQTKHLEIIGYNKRPAGQNAVAAI 733
Query: 75 --------EDSLVMNQASLECG--------VFRSESYKAEVDNKDIQVKSRPSDDMLNF- 117
ED+++MNQ+S++ G ++++E K +D K +P ++
Sbjct: 734 LSYTGYNIEDAIIMNQSSIDRGFMRATFMRLYQTEEQKYPGGAEDKIEKPKPDQRLVGMR 793
Query: 118 -----------GKIQSKS----GDIVIGK---------YAEIG------ADHSIKLKHTE 147
G ++ ++ GD++IGK Y E+G D S+ ++H E
Sbjct: 794 EPKAYEKLDEDGIVEPETYVVGGDVLIGKSSPPRFTEEYKEMGILETRRRDASVAVRHGE 853
Query: 148 RGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLL 207
G+V V+L+ N DG V +R + +GDKF+S HGQKGV+G +
Sbjct: 854 EGVVDTVILTENIDGIKMVKVRVRS----LRIPEIGDKFASRHGQKGVIGMV-------- 901
Query: 208 EAALGKGACDGLMSYATPFAT--STGGVITEQH----QSFVSQLLNCIGARNSGITFIFK 261
L Y P++ +I H + + QL+ I A+ + F +
Sbjct: 902 -----------LPHYDMPYSEFGLVPDIILNPHAFPSRMTLGQLIESIAAKAAA--FRGR 948
Query: 262 HYFLFCLFECPMDWIAFICLVRSL--------------------IFTWITFYQQFIHMSE 301
++ P+D + I + R +F + FYQ+ HM
Sbjct: 949 EVDATPFYKEPLDNLRKILVERGFPPDGTEVMFDGRTGEMIARPVFIGVVFYQRLYHMVS 1008
Query: 302 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL--------- 352
DK+ R G Q LT +P R R GG+ FGEM+ D L+AHGAS L ERL
Sbjct: 1009 DKIHARARGPVQILTRQPTEGRTRKGGLRFGEMERDVLVAHGASQLLVERLLKSSDATKV 1068
Query: 353 ----KCKNV----ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
KC ++ AN G P C I ++ + + Y KLL QE+ SMGI +
Sbjct: 1069 WVCAKCGHIGWWDAN-----KGKPVCPIHGERGEMYQVELSYAFKLLIQEI-LSMGIAAR 1122
Query: 405 F 405
Sbjct: 1123 L 1123
>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
Length = 1138
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 196/487 (40%), Gaps = 123/487 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+ G++ IP + + YQ+ + QA+G N IRVDT L YP++PL
Sbjct: 661 IFGVTASTIPYAEHNQSPRN--TYQAAM-AKQALGLYAANFQIRVDTRSHLLHYPEKPLV 717
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSE---------- 93
+ +G RP ED+++MN++S++ G+ RS
Sbjct: 718 QTRALELMGYNDRPAGQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYATEER 777
Query: 94 ------SYKAEVDNKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGK--------- 131
S K E+ +++ S+P + D + +++ K G+++IGK
Sbjct: 778 RYPGGLSDKIEIPEANVE-GSKPPEMYKKLDADGIISPEVEVKGGEVLIGKTSPPRFMEE 836
Query: 132 YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
Y E G D S+ ++H E+G+V V+++ N +G V +R LGDK
Sbjct: 837 YREFGTVTVRKRDTSVTMRHGEKGVVDTVIITENIEGYKLVKVRVRDQ----RIPELGDK 892
Query: 186 FSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH----Q 239
F+S HGQKGV+G L + Y PF T +I H +
Sbjct: 893 FASRHGQKGVIGML-------------------IPQYDMPFTEDGITPDLIINPHAFPSR 933
Query: 240 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC------------------L 281
+ QL I + + I F F I + +
Sbjct: 934 MTLGQLFETIAGKYAAIYARFVDGTPFAKESIENLRIELLKTGYAPDGTEIMYDGRTGEM 993
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 341
+R+ I + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCL+
Sbjct: 994 IRTPILIGLVYYQKLHHMVADKIHARARGPVQVLTRQPTEGRAREGGLRFGEMERDCLVG 1053
Query: 342 HGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGA 388
HGA+ L ER+ C ++A R G C + I VPY
Sbjct: 1054 HGAAMLLRERMLESSDRYVLYVCELCGHIA-WFDRNKRGYICPVHGDKGKIAAVIVPYAF 1112
Query: 389 KLLSQEL 395
KLL QEL
Sbjct: 1113 KLLLQEL 1119
>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
Length = 1205
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 185/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL 352
C+IAHGAS L ERL
Sbjct: 1169 CMIAHGASSFLKERL 1183
>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
Length = 1205
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 185/435 (42%), Gaps = 113/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R++T+ L+YPQ+P
Sbjct: 778 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKP 834
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 835 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDS 894
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYA------ 133
+ ++ +P DD + ++ DI+IGK +
Sbjct: 895 EKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEA 954
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+S+++D F V +R + +GD
Sbjct: 955 EELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT----KIPQIGD 1010
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 1011 KFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1070
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 1071 GYEGDATPFTDVT--------VDSVSSLLREHGYQSRGFEVMYNGHTGRKLV-------- 1114
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1115 ------AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERD 1168
Query: 338 CLIAHGASGNLHERL 352
C+IAHGAS L ERL
Sbjct: 1169 CMIAHGASSFLKERL 1183
>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Staphylothermus marinus F1]
Length = 1156
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/489 (26%), Positives = 201/489 (41%), Gaps = 127/489 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
++G++ IIP + + Y++ + Q++G + N R+DT L YPQ+PL
Sbjct: 680 IMGITASIIPYAEHNQSPRNS--YEAAM-AKQSLGLYSANFQQRMDTRGHLLHYPQKPLV 736
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSE--------SY 95
+ G RP ED+L+MN++S++ G+ RS Y
Sbjct: 737 QTRAMEVNGYNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEY 796
Query: 96 KAEVDNKDIQVKSRPS---------------DDMLNFGKIQSKSGDIVIGKYAE------ 134
+ +D ++ PS +D + + K GD++IGK +
Sbjct: 797 RYPGGQED-RIMIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKGGDVLIGKISPPRFMTA 855
Query: 135 ----IGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+GA D S+ +H E+G+V V+++++ DG V +R + LGDK
Sbjct: 856 QEYTVGAGITRQDASVVTRHGEKGIVDVVMVTTDIDGNRLVKVRVRD----LRIPELGDK 911
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DG 218
F+S HGQKGV+G L T QL+E+ GK A +G
Sbjct: 912 FASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRMTVGQLIESIAGKAAALEG 971
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF H+ + L+ + +H + +E D
Sbjct: 972 RFVDATPF-----------HKEPIDNLMITLK----------RHGYPMSGYETMYDGRTG 1010
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
L ++ IF I +YQ+ HM DK+ R G Q LT +P R + GG+ FGEM+ DC
Sbjct: 1011 EIL-KTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAKEGGLRFGEMEVDC 1069
Query: 339 LIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPY 386
L+ HGAS L E++ K+ I R+ G C I + V Y
Sbjct: 1070 LVGHGASLLLKEQMLDKSDKTTIYVCELCGHIGYYDRIRGKYMCPIHKDKGKLKPVEVSY 1129
Query: 387 GAKLLSQEL 395
KLL QEL
Sbjct: 1130 AFKLLVQEL 1138
>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
[Trachipleistophora hominis]
Length = 1381
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 208/509 (40%), Gaps = 143/509 (28%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ +IP + + YQS S QA+G TN +R+D+L LFYPQ+P
Sbjct: 899 SMILGICASMIPFPDHNQSPRN--TYQS-AMSKQAMGVYATNFLLRMDSLSNILFYPQKP 955
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 956 LVTTRAMEYLRFRELPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFRSFLYRTYTDQ 1015
Query: 102 KD------IQVKSRP-----------------SDDMLNFGKIQSKSGDIVIGKYAEI--- 135
+ ++V ++P D ++N G ++ D++IGK +
Sbjct: 1016 ETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPG-VRVTGEDVLIGKILPVIER 1074
Query: 136 --------------------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 169
D S ++ TE G+V V+++ N +G F V
Sbjct: 1075 MDVNGNSLIDNRDEKINTESNTMNVSWKDASTAMRPTEEGVVDSVIVT-NREGYKFTKVK 1133
Query: 170 IRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------------- 203
IR +GDKF+S HGQKG +G E P
Sbjct: 1134 IRS----CRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMTI 1189
Query: 204 AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 262
L+E LGK A G TPF+ T G I+EQ + F G + G+ ++
Sbjct: 1190 GHLIECLLGKVSALAGEEGDGTPFSDVTVGAISEQLKDF--------GYEHRGLETMYNG 1241
Query: 263 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 322
L + IF T+YQ+ HM +DKV R G Q LT +P
Sbjct: 1242 MTGRKL--------------DAQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEG 1287
Query: 323 RKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV---GGPY-----CRICN 374
R R GG+ FGEM+ DC+I+HG S L ERL V++ VV G + C+ C
Sbjct: 1288 RSRDGGLRFGEMERDCIISHGTSLFLRERL--FEVSDFFSLVVCEQCGLFCLEDGCKGCG 1345
Query: 375 SADDIIKANVPYGAKLLSQELSFSMGITL 403
+ + +PY KLL QEL MG+ +
Sbjct: 1346 NKTKLAIVEMPYAFKLLLQEL---MGMNI 1371
>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
adamanteus]
Length = 1167
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 694 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 750
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 751 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 810
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +PS DD L ++ D++IGK +
Sbjct: 811 ESKKGYDQEEVFEKPSRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 870
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 871 DELESTNRRYTKRDCSTFLRTSETGIVDQVMITLNQEGYKFCKIRVRS----VRIPQIGD 926
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 927 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 986
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 987 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1028
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1029 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1085
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1086 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1146 YACKLLFQEL-MSMSIAPRM 1164
>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 136/500 (27%), Positives = 206/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL LFYPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLFYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS+++N+ +++ G FRS Y++ D+
Sbjct: 758 LVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVILNEGAVDRGFFRSVFYRSYKDS 817
Query: 102 KD----------------------IQVKSRPSDDMLNFGKIQSKSGDIVIGKY------- 132
+ + V + DD + + D++IGK
Sbjct: 818 ESKKGLDQEELFERPDPNHVQGMRMAVYDKLDDDGIIAPGTRVSGDDVLIGKTLTLPENE 877
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+ A D S+ ++ +E G++ +V+++ N +G F + +R V + +GD
Sbjct: 878 DELDAQAKRFTKRDCSVFMRRSETGIIDQVMVTINQEGYKFCKIRVR----TVKTPQIGD 933
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 934 KFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G +F + L
Sbjct: 994 GEIGDATPFNDAV-------NVRKISDLLQDYGYHLRGNEVLFNGHTGRKL--------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 -----NAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I + + CR C + I + +P
Sbjct: 1093 CQIAHGAAQFLKERLFEISDPYRVHVCNICGLIAIANLRNNTFECRGCKNKTQISQVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
Length = 1260
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 212/499 (42%), Gaps = 134/499 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + +YQS QA+G T++ N R+DTL L+YPQ+P
Sbjct: 777 SLILGVCASIIPFPDHNQSPRN--VYQS-AMGKQAMGVYTSSFNHRMDTLAHLLYYPQKP 833
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA---- 97
L + L EDSL+M+Q+S++ G+FRS Y+
Sbjct: 834 LVCTRAMEFLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSE 893
Query: 98 EVDNKDIQVKS--RPSDDML------NFGKIQSKS----------GDIVIGK-------- 131
E + V+S PS + + ++ K+ + D++IGK
Sbjct: 894 ERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPIFDDD 953
Query: 132 ----------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 175
+A+ D S+ L+ +E G+V +V+LS N G F V +R SV
Sbjct: 954 AGMPGAAAGIAGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNSRGSRFTKVKVR-SVR 1012
Query: 176 MVHSACLGDKFSSMHGQKGVLGFLEQTP--------------------------AQLLEA 209
+ + GDKF+S HGQKG +G +T L+E
Sbjct: 1013 IPQT---GDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVEC 1069
Query: 210 ALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCL 268
LGK A G ATPF G + + +S L+ +G G ++ + L
Sbjct: 1070 LLGKTAAIFGGEGDATPF---NGYAVLD-----ISNRLHSLGYERFGNERLYHGHTGRHL 1121
Query: 269 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
SL+F T+YQ+ HM +DK+ R G LT +P+ + R GG
Sbjct: 1122 --------------PSLVFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGG 1167
Query: 329 IEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRV------------VGGPYCRICNSA 376
+ FGEM+ DC+I+HGA+ L ERL ++ A + G C++C++
Sbjct: 1168 LRFGEMERDCMISHGAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDNK 1227
Query: 377 DDIIKANVPYGAKLLSQEL 395
I + +PY KLL QEL
Sbjct: 1228 SRISQICIPYACKLLLQEL 1246
>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Takifugu rubripes]
Length = 982
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/502 (28%), Positives = 205/502 (40%), Gaps = 125/502 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 509 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 565
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 566 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 625
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K ++ +P+ DD L ++ D++IGK +
Sbjct: 626 ESKKGFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPDNE 685
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 686 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 741
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 742 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK 801
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + VS LL+ G G ++ + L
Sbjct: 802 GEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLT-------- 846
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 847 ------SQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 900
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 901 CQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMP 960
Query: 386 YGAKLLSQELSFSMGITLKFDT 407
Y KLL QEL SM I + T
Sbjct: 961 YACKLLFQEL-MSMSIAPRMMT 981
>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
asahii CBS 8904]
Length = 1757
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 183/429 (42%), Gaps = 118/429 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DT+ L+YPQ P
Sbjct: 759 SMILGVCASIVPFPDHNQSPRN--TYQS-AMGKQAMGIHLTNYQLRMDTMANILYYPQSP 815
Query: 62 LF------WILISDCLG--------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L ++ SD EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 816 LATTQSMKYLKFSDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYTDT 875
Query: 101 -----------------NKDIQVKSRPSD---DMLNFGKIQSKSG----DIVIGKYAEIG 136
N+ +++K SD + N G I + DI+IGK A I
Sbjct: 876 EKMVGMQKVESFEKPDRNETLRMKHGSSDRYAKLDNDGLITPATNVNGDDIIIGKTAPIP 935
Query: 137 ADH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
D S +K TE+G+V +V++++N DG F + IR +
Sbjct: 936 PDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRST----RVPQ 991
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGA 215
+GDKF+S HGQKG +G E P L+E L K A
Sbjct: 992 IGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLA 1051
Query: 216 C-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS+LL G ++ G+ ++ + L
Sbjct: 1052 TLTGREGDATPF--------TELTVESVSKLLRQRGYQSRGLEVMYHGHTGKKL------ 1097
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
R+ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1098 --------RAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1149
Query: 335 KCDCLIAHG 343
+ DCL HG
Sbjct: 1150 ERDCL--HG 1156
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 337 DCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIK 381
+C+I+HG +G L ER+ +C VAN+ ++ +C +C ++ I +
Sbjct: 1671 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEF---HCSVCRNSTQISQ 1727
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL +M +T++
Sbjct: 1728 IYIPYAAKLLFQELQ-AMNVTVRM 1750
>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
Length = 1234
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 137/513 (26%), Positives = 205/513 (39%), Gaps = 140/513 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N R+DT+ L YPQ+P
Sbjct: 739 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGVYCSNFRARMDTMANVLNYPQKP 795
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDSL+MNQ++++ G+FRS Y+ VD
Sbjct: 796 LVTTRAMEFLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGLFRSTFYRCYVDQ 855
Query: 102 K----------------DIQVKSRPSDDM---LNFGKIQS-------------KSGDIVI 129
+ + + +PS D L G DI+I
Sbjct: 856 ERNKSPHGGSAATALVSNCEEFEKPSRDNCLGLRHGSYHKLDADGLVAPGTRVSGNDIII 915
Query: 130 GKYAE--IGADHSIKLKHTER-----------GLVLKVLLSSNDDGKNFAVVSIRQSVNM 176
GK + + D S++ +H +R G++ V+L++N DG F V R
Sbjct: 916 GKTSPLPVSEDSSLEQRHQKRDASTSLRSHENGIIDSVMLTTNADGFKFTKVRFRN---- 971
Query: 177 VHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAA 210
+ +GDKF+S HGQKG +G T L+E
Sbjct: 972 IRIPQIGDKFASRHGQKGTIGMTYRQEDMPFTLEGITPDIIVNPHAIPSRMTVGHLIECL 1031
Query: 211 LGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 269
LGK + G ATPF T I + L+ +G + G ++ + L
Sbjct: 1032 LGKVSSQTGDEGDATPFTDVTVQAIAD--------TLHNLGYQRHGNEVLYSGHTGRPL- 1082
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
+ IF TFYQ+ HM +DK+ R+ G LT +P+ R R GG+
Sbjct: 1083 -------------TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGL 1129
Query: 330 EFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICN 374
GEM+ DCLI+HG++ L +RL + +AN+ + CR C
Sbjct: 1130 RMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFE---CRNCR 1186
Query: 375 SADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
+ I + ++PY KLL QEL SM I + T
Sbjct: 1187 NKTQISQLHIPYSCKLLFQEL-MSMSIAPRLFT 1218
>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
asahii CBS 2479]
Length = 1732
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 183/429 (42%), Gaps = 118/429 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DT+ L+YPQ P
Sbjct: 734 SMILGVCASIVPFPDHNQSPRN--TYQS-AMGKQAMGIHLTNYQLRMDTMANILYYPQSP 790
Query: 62 LF------WILISDCLG--------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L ++ SD EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 791 LATTQSMKYLKFSDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYTDT 850
Query: 101 -----------------NKDIQVKSRPSD---DMLNFGKIQSKSG----DIVIGKYAEIG 136
N+ +++K SD + N G I + DI+IGK A I
Sbjct: 851 EKMVGMQKVESFEKPDRNETLRMKHGSSDRYAKLDNDGLITPATNVNGDDIIIGKTAPIP 910
Query: 137 ADH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
D S +K TE+G+V +V++++N DG F + IR +
Sbjct: 911 PDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRST----RVPQ 966
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGA 215
+GDKF+S HGQKG +G E P L+E L K A
Sbjct: 967 IGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLA 1026
Query: 216 C-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G ATPF TE VS+LL G ++ G+ ++ + L
Sbjct: 1027 TLTGREGDATPF--------TELTVESVSKLLRQRGYQSRGLEVMYHGHTGKKL------ 1072
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
R+ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1073 --------RAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1124
Query: 335 KCDCLIAHG 343
+ DCL HG
Sbjct: 1125 ERDCL--HG 1131
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 337 DCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIK 381
+C+I+HG +G L ER+ +C VAN+ ++ +C +C ++ I +
Sbjct: 1646 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEF---HCSVCRNSTQISQ 1702
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL +M +T++
Sbjct: 1703 IYIPYAAKLLFQELQ-AMNVTVRM 1725
>gi|40644555|emb|CAD89596.1| RNA polymerase II, second largest subunit [Myoporum insulare]
Length = 350
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 147/340 (43%), Gaps = 88/340 (25%)
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY+ E VK RP D
Sbjct: 12 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 71
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSN 159
D L + D++IGK I DHS L+H+E G+V +VLL++N
Sbjct: 72 DGLAPPGTRVSGEDVIIGKTTPINPEDAQGQAARYTKRDHSTSLRHSETGIVDQVLLTTN 131
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 132 ADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVN 187
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 188 PHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 239
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 240 MRGFETMYNGHTGRRLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGPV 285
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 286 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 325
>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
Length = 1174
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 142/502 (28%), Positives = 205/502 (40%), Gaps = 125/502 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K ++ +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + VS LL+ G G ++ + L
Sbjct: 994 GEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRGNEVLYNGFTGRKL--------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 -----TSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKFDT 407
Y KLL QEL SM I + T
Sbjct: 1153 YACKLLFQEL-MSMSIAPRMMT 1173
>gi|224031673|gb|ACN34912.1| unknown [Zea mays]
gi|413933608|gb|AFW68159.1| putative DNA-directed RNA polymerase II subunit family protein [Zea
mays]
Length = 362
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 164/386 (42%), Gaps = 81/386 (20%)
Query: 66 LISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG 125
LI + GRP M R SY D+ +R S + + GK
Sbjct: 4 LIKEEFGRPNRENTMG--------MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQ 55
Query: 126 DIVIGKYAEIGA-DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D G+ + DHS L+H+E G+V +VLL++N DG F V +R V +GD
Sbjct: 56 DDAQGQASRYSKRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGD 111
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KFSS HGQKG +G E P QL+E +GK A
Sbjct: 112 KFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQM 171
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +S+ L+ + G ++ + L
Sbjct: 172 GKEGDATPFTDVT--------VDNISKALHKCNYQMRGFETMYNGHTGRKLT-------- 215
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ D
Sbjct: 216 ------AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 269
Query: 338 CLIAHGASGNLHERL-------------KCK--NVANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHGA+ L ERL KC +AN+ + CR C + DI++
Sbjct: 270 CMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSF---ECRGCKNKTDIVQV 326
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQ 408
++PY KLL QEL +M I + T
Sbjct: 327 HIPYACKLLFQEL-MAMAIAPRMLTH 351
>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
niloticus]
Length = 1174
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 142/502 (28%), Positives = 205/502 (40%), Gaps = 125/502 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K ++ +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + VS LL+ G G ++ + L
Sbjct: 994 GEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRGNEVLYNGFTGRKL--------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 -----TSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKFDT 407
Y KLL QEL SM I + T
Sbjct: 1153 YACKLLFQEL-MSMSIAPRMMT 1173
>gi|3005758|gb|AAC09367.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
Length = 476
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 3 SMILGVCASIIPFPDHNQSPRNT--YQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKP 59
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 60 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 119
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K +V +P+ DD L ++ D++IGK +
Sbjct: 120 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 179
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 180 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 235
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 236 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 295
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 296 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 337
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 338 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 394
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 395 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 454
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 455 YACKLLFQEL-MSMSIAPRM 473
>gi|90079569|dbj|BAE89464.1| unnamed protein product [Macaca fascicularis]
Length = 501
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 28 SMILGVCASIIPFPDHNQSPRNT--YQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKP 84
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 85 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 144
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 145 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 204
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 205 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 260
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 261 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 320
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 321 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 362
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 363 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 419
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 420 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 479
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 480 YACKLLFQEL-MSMSIAPRM 498
>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Papio anubis]
Length = 1083
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 610 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 666
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 667 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 726
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K +V +P+ DD L ++ D++IGK +
Sbjct: 727 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 786
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 787 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 842
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 843 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 902
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 903 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 944
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 945 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1001
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1002 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1061
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1062 YACKLLFQEL-MSMSIAPRM 1080
>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
Length = 1174
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGKEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
Length = 1118
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 195/448 (43%), Gaps = 101/448 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLLHYPQVPLVNSRIMKAVGYEDRPAGQNFVVAILAYQGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED++++N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPDPTVRGYRGEKYYRNLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYA------EIGA----------DHSIKLKHTERGLVLKVLL 156
D L F + + D++IG+ + E G + S+ ++ +E+G+V KV++
Sbjct: 792 DGLIFPESKVDGKDVLIGRTSPPRFLEERGGLGGMILQERRETSVAVRPSEKGIVDKVII 851
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 852 TETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVP 905
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 906 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEERLRKELEELGF 961
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I LV + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 KHNGREVMY----DGITGKRLV-ADIFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQPT 1016
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGP 368
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + G
Sbjct: 1017 EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKV 1076
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1077 YCPVCGEEERISKVEMSYAFKLLLDELK 1104
>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
Length = 1226
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 753 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 809
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 810 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 869
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 870 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 929
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 930 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 985
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 986 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 1045
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 1046 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1087
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1088 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1144
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1145 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1204
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1205 YACKLLFQEL-MSMSIAPRM 1223
>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
carolinensis]
Length = 1174
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIKVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
[Pongo abelii]
gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Otolemur garnettii]
gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1099
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 626 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 682
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 683 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 742
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 743 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 802
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 803 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 858
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 859 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 918
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 919 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 960
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 961 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1017
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1018 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1077
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1078 YACKLLFQEL-MSMSIAPRM 1096
>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
gorilla gorilla]
Length = 1097
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 624 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 680
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 681 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 740
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 741 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 800
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 801 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 856
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 857 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 916
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 917 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 958
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 959 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1015
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1016 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1075
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1076 YACKLLFQEL-MSMSIAPRM 1094
>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
Length = 807
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 334 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKP 390
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 391 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 450
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K +V +P+ DD L ++ D++IGK +
Sbjct: 451 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 510
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 511 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 566
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 567 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 626
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 627 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 668
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 669 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 725
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 726 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 785
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 786 YACKLLFQEL-MSMSIAPRM 804
>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Equus caballus]
Length = 1174
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|414871743|tpg|DAA50300.1| TPA: putative DNA-directed RNA polymerase II subunit family protein
[Zea mays]
Length = 362
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 164/386 (42%), Gaps = 81/386 (20%)
Query: 66 LISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG 125
L+ + GRP M R SY D+ +R S + + GK
Sbjct: 4 LVKEEFGRPNRENTMG--------MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQ 55
Query: 126 DIVIGKYAEIGA-DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D G+ + DHS L+H+E G+V +VLL++N DG F V +R V +GD
Sbjct: 56 DDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGD 111
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KFSS HGQKG +G E P QL+E +GK A
Sbjct: 112 KFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQM 171
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +S+ L+ + G ++ + L
Sbjct: 172 GKEGDATPFTDVT--------VDNISKALHKCNYQMRGFETMYNGHTGRKLT-------- 215
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ D
Sbjct: 216 ------AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 269
Query: 338 CLIAHGASGNLHERL-------------KCK--NVANVIQRVVGGPYCRICNSADDIIKA 382
C+IAHGA+ L ERL KC +AN+ + CR C + DI++
Sbjct: 270 CMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSF---ECRGCKNKTDIVQV 326
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQ 408
++PY KLL QEL +M I + T
Sbjct: 327 HIPYACKLLFQEL-MAMAIAPRMLTH 351
>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Loxodonta africana]
Length = 1010
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 537 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 593
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 594 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 653
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 654 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 713
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 714 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 769
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 770 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 829
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 830 GEIGDATPFNDAV-------NVQKISNLLSEYGYHLRGNEVLYNGFTGR----------- 871
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 872 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 928
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 929 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 988
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 989 YACKLLFQEL-MSMSIAPRM 1007
>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
troglodytes]
gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
jacchus]
gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
[Pongo abelii]
gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
leucogenys]
gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
porcellus]
gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cricetulus griseus]
gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Otolemur garnettii]
gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Papio anubis]
gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
norvegicus]
gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
Length = 1174
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1174
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
[Canis lupus familiaris]
gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Felis catus]
Length = 1099
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 626 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 682
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 683 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 742
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K +V +P+ DD L ++ D++IGK +
Sbjct: 743 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 802
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 803 DELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 858
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 859 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 918
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 919 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 960
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 961 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1017
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1018 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1077
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1078 YACKLLFQEL-MSMSIAPRM 1096
>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1167
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 694 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 750
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 751 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 810
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 811 ESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 870
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 871 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 926
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 927 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 986
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 987 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1028
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1029 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1085
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1086 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1146 YACKLLFQEL-MSMSIAPRM 1164
>gi|403284743|ref|XP_003933716.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2, partial [Saimiri boliviensis boliviensis]
Length = 992
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 204/496 (41%), Gaps = 125/496 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 519 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 575
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 576 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 635
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K +V +P+ DD L ++ D++IGK +
Sbjct: 636 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 695
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 696 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 751
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 752 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 811
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 812 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 853
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 854 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 910
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 911 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 970
Query: 386 YGAKLLSQELSFSMGI 401
Y KLL QEL SM I
Sbjct: 971 YACKLLFQEL-MSMSI 985
>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
Length = 1167
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 694 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 750
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 751 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 810
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 811 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 870
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 871 DELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 926
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 927 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 986
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 987 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1028
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1029 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1085
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1086 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1146 YACKLLFQEL-MSMSIAPRM 1164
>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
Length = 1176
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 199/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL LFYPQ+P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLFYPQKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MN +++E G FRS Y+A D
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNTSAVERGFFRSVFYRAYKDQ 819
Query: 101 --------NKDIQVKSRPS-------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ + +R S DD + I+ D++IGK +
Sbjct: 820 ECKRSGDQEEQFEKPTRESCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPITD 879
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+++ N++G F + +R V +GD
Sbjct: 880 DELEGTTKRFSKRDASTFLRNSETGIVDQVMVTLNNEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++
Sbjct: 996 GEIGDATPFNDTV-------NVQKISNLLQEYGYQLRGNEVMYNG--------------Q 1034
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1035 TGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQIAHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1152 RLPYAAKLLFQEL 1164
>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
Length = 1168
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 695 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 751
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 752 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 811
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 812 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 871
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 872 DELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 927
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 928 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 987
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 988 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1029
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1030 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1086
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1087 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1146
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1147 YACKLLFQEL-MSMSIAPRM 1165
>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
Length = 1175
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 702 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 758
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 818
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 819 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 879 DELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1094 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1153
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1154 YACKLLFQEL-MSMSIAPRM 1172
>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
domestica]
gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
harrisii]
Length = 1174
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
cuniculus]
Length = 1174
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFLGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Canis lupus familiaris]
gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Ailuropoda melanoleuca]
gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Felis catus]
gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
Length = 1174
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
[Saccoglossus kowalevskii]
Length = 1175
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 138/503 (27%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS++MN +++E G FRS Y++ D
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNLSAVERGFFRSVFYRSYRDQ 817
Query: 102 KD----------------------IQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ + V + DD + + D++IGK +
Sbjct: 818 ESKKGLDQEEVFEKPDRESCQGMRMAVYDKLDDDGIIAPGSRVSGDDVLIGKTVTLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S ++ TE G+V +V++S N +G F + IR V +GD
Sbjct: 878 DELEGTTRRFTKRDSSTFMRRTETGIVDQVMVSINQEGYKFCKIKIRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ + L
Sbjct: 994 GEIGDATPFNDTV-------NVQKISNLLHEYGYHLRGNEVLYNGFTGRKLG-------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ------TQIFIGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ CR C + I +
Sbjct: 1093 CQISHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFE---CRGCKNKTQISQI 1149
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1150 RLPYACKLLFQEL-MSMSIAPRM 1171
>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
rotundus]
Length = 1144
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 671 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 727
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 728 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 787
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 788 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 847
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 848 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 903
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 904 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 963
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 964 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1005
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1006 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1062
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1063 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1122
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1123 YACKLLFQEL-MSMSIAPRM 1141
>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
Length = 1122
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 128/454 (28%), Positives = 196/454 (43%), Gaps = 104/454 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++GF N IRVDT + YPQ PL I +G RP
Sbjct: 676 QSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYGGYNM 735
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-------------VDNKDIQ------VKSRPSD 112
ED+++MN+AS+E G+ RS +Y+AE V + IQ +
Sbjct: 736 EDAIIMNKASIERGLGRSTFFRTYEAEEKRYLGGQTDRFEVPDPTIQGYLGEKYYRHLDE 795
Query: 113 DMLNFGKIQSKSGDIVIGKYAE---------IGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + D+++G+ + +G + S+ ++ +ERG+V KV++
Sbjct: 796 DGIIFPESKVTGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSVTVRPSERGIVDKVII 855
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V+ R + GDKF+S HGQKGV+G + P + +
Sbjct: 856 TETGDGTKLVKVTTRD----LRIPEFGDKFASRHGQKGVVGLI--VPQEDMPWTESGIVP 909
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ G R G FI F
Sbjct: 910 DLIVNPHGIPSRMTVGQLI----EAIGGKVAALTGRRVDGTAFIGEPEEKLRKELEELGF 965
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 966 KHSGREVMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1020
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R G
Sbjct: 1021 EGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKR-RGK 1079
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
YC +C + I K + Y KLL EL +MGI
Sbjct: 1080 VYCPVCGEEEKISKVEMSYAFKLLLDELK-AMGI 1112
>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Pongo abelii]
gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1167
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 694 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 750
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 751 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 810
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 811 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 870
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 871 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 926
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 927 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 986
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 987 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1028
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1029 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1085
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1086 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1146 YACKLLFQEL-MSMSIAPRM 1164
>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
Length = 1167
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 694 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 750
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 751 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 810
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 811 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 870
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 871 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 926
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 927 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 986
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 987 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1028
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1029 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1085
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1086 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1146 YACKLLFQEL-MSMSIAPRM 1164
>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
Length = 1167
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 694 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 750
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 751 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 810
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 811 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 870
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 871 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 926
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 927 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 986
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 987 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1028
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1029 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1085
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1086 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1146 YACKLLFQEL-MSMSIAPRM 1164
>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
Length = 1194
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 208/506 (41%), Gaps = 137/506 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ +IP + + YQS S QA+G TN +R+D+L LFYPQ+P
Sbjct: 712 SMILGICASMIPFPDHNQSPRN--TYQS-AMSKQAMGVYATNFLLRMDSLSNILFYPQKP 768
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 769 LVTTRAMEYLRFRELPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFRSFLYRTYTDQ 828
Query: 102 KD------IQVKSRPSD------DMLNFGKIQSKS----------GDIVIGKY------- 132
+ ++V ++P LN+ K+ D++IGK
Sbjct: 829 ETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPGARVTGEDVLIGKILPVIERT 888
Query: 133 -AEIGA---------------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSI 170
A+ GA D S ++ TE G+V V+++ N +G F V I
Sbjct: 889 GADGGALIDNKDGKINTESNATNVSWKDASTAMRPTEEGVVDSVIVT-NREGYKFTKVKI 947
Query: 171 RQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------A 204
R +GDKF+S HGQKG +G E P
Sbjct: 948 RS----CRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMTIG 1003
Query: 205 QLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHY 263
L+E LGK A G TPF+ T I+EQ + F G + G+ ++
Sbjct: 1004 HLIECLLGKVSALAGEEGDGTPFSDVTVEAISEQLKDF--------GYEHRGLETMYNGM 1055
Query: 264 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
L + IF T+YQ+ HM +DKV R G Q LT +P R
Sbjct: 1056 TGRKL--------------DAQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEGR 1101
Query: 324 KRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANVIQRVVGGPY-----CRICNSAD 377
R GG+ FGEM+ DC+I+HG S L ERL + + ++I G + C+ C +
Sbjct: 1102 SRDGGLRFGEMERDCIISHGTSLFLRERLFEVSDFFSLIVCEQCGLFCLEDGCKGCGNKT 1161
Query: 378 DIIKANVPYGAKLLSQELSFSMGITL 403
+ +PY KLL QEL MG+ +
Sbjct: 1162 KLAIVEMPYAFKLLLQEL---MGMNI 1184
>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
guttata]
Length = 1174
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
Length = 1174
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
Length = 1168
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 695 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 751
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 752 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 811
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 812 ESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 871
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 872 DELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 927
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 928 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 987
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 988 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1029
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1030 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1086
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1087 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1146
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1147 YACKLLFQEL-MSMSIAPRM 1165
>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
Length = 1233
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 140/498 (28%), Positives = 204/498 (40%), Gaps = 135/498 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N R+DTL L YPQ+P
Sbjct: 756 SMILGICGSIIPFPDHNQSPRN--TYQSAM-GKQAMGIYASNFQQRMDTLSHVLHYPQKP 812
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDSL+MNQA+++ G+FRS Y+ D
Sbjct: 813 LATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFYRTYSDK 872
Query: 101 --NKDI--------QVKSRPSDDML------NFGKIQS----------KSGDIVIGKY-- 132
NK I + RP+ D ++ KI S DI++GK
Sbjct: 873 EHNKGIWDSPEYLQETFERPNRDECTAMRHGSYEKIDSDGLVSPGVRVSGSDILVGKTSP 932
Query: 133 -------AEIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
AE D S ++ E GLV +V+LS+N DG F V R +
Sbjct: 933 SWHSGLKAERSGPSKRDSSTTMRPNESGLVDQVMLSTNQDGMKFTKVRTR----TIRIPQ 988
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG +G E P L+E K G
Sbjct: 989 IGDKFASRHGQKGTIGMTYAQEDMPWTRDGVSPDIIVNPHAIPSRMTIGHLVECLQSKVG 1048
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G ATPF V +Q ++ +L+ +G G ++ +
Sbjct: 1049 ALTGKEGDATPFT----DVSVDQ----IAGVLHELGYHRHGNEVMYSGHTGR-------- 1092
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
++ + +F TFYQ+ H+ +DK+ R+ G LT +P+ R R GG+ GEM
Sbjct: 1093 ------IIHAKVFLGPTFYQRLKHLVDDKIHARSRGPVTMLTRQPMEGRARDGGLRMGEM 1146
Query: 335 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRV----VGGPYCRICNSAD 377
+ DCLI+HG S L +R+ C +A+ R C+ NS+
Sbjct: 1147 ERDCLISHGVSSFLRDRMFANSDPYSIHVCTLCGLIAHADLRKRAFWCNNKDCQHANSS- 1205
Query: 378 DIIKANVPYGAKLLSQEL 395
I++ ++PY KLL QEL
Sbjct: 1206 -IVRVHIPYACKLLFQEL 1222
>gi|150401219|ref|YP_001324985.1| DNA-directed RNA polymerase subunit B' [Methanococcus aeolicus
Nankai-3]
gi|150013922|gb|ABR56373.1| RNA polymerase Rpb2 domain 6 [Methanococcus aeolicus Nankai-3]
Length = 611
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 207/499 (41%), Gaps = 120/499 (24%)
Query: 4 LLGLSCGIIP----SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+LG+ G+ P + +TM + Q++G P N +R+DT L YPQ
Sbjct: 132 ILGIGAGVAPYPEHNSAPRITMAAAM-------GKQSLGMPLANMKLRMDTKAHLLHYPQ 184
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA-- 97
P+ + LG RP ED+ ++N+AS+E G+ RS +++
Sbjct: 185 VPIVRTKHQEILGFDRRPAGQNFVVAVMSYEGYNMEDAFIINKASIERGLARSSFFRSYE 244
Query: 98 ---------EVDNKDIQVKS----RPSDDMLNFG-----KIQS--KSGDIVIGKYA---- 133
+VD +I + R + N G +++S KSGD++IGK +
Sbjct: 245 GFEKRHPGGQVDRFEIPEQGVRGYRAEEAYRNLGDDGIVEVESEVKSGDVIIGKTSPPRF 304
Query: 134 ----EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
+I D SI ++H E G+V V+LS +G A + +R + L
Sbjct: 305 LEEQDISLRSKSQRRDTSITIRHGEGGIVDAVILSETKEGNRLAKIRVRD----LRIPEL 360
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGVLG + P + + D +++ +A P + G V+
Sbjct: 361 GDKFASRHGQKGVLGLI--VPQEDMPFTENGVVPDLIINPHAIPSRMTIGQVLEMIGGKV 418
Query: 242 VSQLLNCIGARNSGITFI---------------FKHYFLFCLFECPMDWIAFICLVRSLI 286
S +NC R G F +KH +F+ + I
Sbjct: 419 GS--MNC--KRIDGTIFSGDPEWELRSSMEKCGYKHNGKEVMFDGKTGK-----KLECEI 469
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F I +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D LI HG +
Sbjct: 470 FVGIAYYQKLHHLVAGKMHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLIGHGTAL 529
Query: 347 NLHERL-------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYG 387
L ERL C VA + G C+ C +D I +PY
Sbjct: 530 LLKERLFDESDPYECHICSNCGEVA-IYDHKRGMKRCQACGETEDVQNNRKIPSVRLPYA 588
Query: 388 AKLLSQELSFSMGITLKFD 406
KLL EL SMGI K +
Sbjct: 589 FKLLLDELR-SMGINPKLE 606
>gi|15897172|ref|NP_341777.1| DNA-directed RNA polymerase subunit B' [Sulfolobus solfataricus P2]
gi|13813361|gb|AAK40567.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [Sulfolobus
solfataricus P2]
Length = 649
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 134/497 (26%), Positives = 199/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 172 ILGITASIIPYPEHNQSPRN--TYQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 228
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 229 QTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 288
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V D+ + +++ K GD++IGK +
Sbjct: 289 KYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 348
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 349 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRIPTIGDKFA 404
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 405 SRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNI 464
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +++ + QL N I ++ +L E D
Sbjct: 465 VDATPF-----------YKTPIEQLQNE----------ILRYGYLPDATEVVYDGRTG-Q 502
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 503 KIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 562
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + +I + C I ++ V Y
Sbjct: 563 GFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAF 622
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 623 KLLIQEL-MSMIISPRL 638
>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
Length = 1179
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 706 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 762
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS Y++ D
Sbjct: 763 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKDQ 822
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAE----- 134
+ ++ +P+ DD + ++ D++IGK
Sbjct: 823 ESKKIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPEND 882
Query: 135 ----------IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
+ D S L+++E G+V +V+++ N +G F+ + +R V +GD
Sbjct: 883 DELEGSTKKYVKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRS----VRIPQIGD 938
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 939 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 998
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 999 GEIGDATPFNDAV-------NVQKISSLLQEYGYHLRGNEVMYNGHTGRK---------- 1041
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1042 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1097
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1098 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1154
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1155 RLPYAAKLLFQEL-MSMNIAPRL 1176
>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
Length = 1124
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 134/497 (26%), Positives = 199/497 (40%), Gaps = 125/497 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQRPL
Sbjct: 647 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 703
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
D +G RP EDS++MN++S+E G++RS E
Sbjct: 704 QTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 763
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGKYA-------- 133
K +D V D+ + +++ K GD++IGK +
Sbjct: 764 KYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 823
Query: 134 ------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ D SI +H E G+V VL++ +G V +R + +GDKF+
Sbjct: 824 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRIPTIGDKFA 879
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G L T Q++E GK A G +
Sbjct: 880 SRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNI 939
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF +++ + QL N I ++ +L E D
Sbjct: 940 VDATPF-----------YKTPIEQLQNE----------ILRYGYLPDATEVVYDGRTG-Q 977
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
++S I+ + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 978 KIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1037
Query: 341 AHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGA 388
G + L +RL + +I + C I ++ V Y
Sbjct: 1038 GFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAF 1097
Query: 389 KLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1098 KLLIQEL-MSMIISPRL 1113
>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
Length = 1174
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 138/503 (27%), Positives = 200/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L YPQ+P
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLQYPQKP 757
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRS---ESYKAE 98
L ++S EDS++MN +++E G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSVVAILSYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDQ 817
Query: 99 VDNKDIQ-------------------VKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ + + DD + ++ D+VIGK +
Sbjct: 818 ESKRSADQEETFEKPFRDHCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+H+E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DDLESTTKKFSKRDASTFLRHSETGIVDQVMLTLNAEGNKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ + L
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLQEYGYHLRGNEVLYNGHTGRKL--------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 -----NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C VAN+ C+ C + I +
Sbjct: 1093 CQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVANLRNNTFE---CKGCKNKTQISQV 1149
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1150 RLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 1202
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 134/513 (26%), Positives = 205/513 (39%), Gaps = 140/513 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N R+DT+ L YPQ+P
Sbjct: 711 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYCSNFRARMDTMANVLNYPQKP 767
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDSL+MNQ++++ G FRS Y+ +D
Sbjct: 768 LVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQ 827
Query: 102 K-------------------DIQVKSRPS-------------DDMLNFGKIQSKSGDIVI 129
+ + + SR + +D L + DI+I
Sbjct: 828 ERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIII 887
Query: 130 GKYAEI--GADHSIKLKHTER-----------GLVLKVLLSSNDDGKNFAVVSIRQSVNM 176
GK + + D S++ +H +R G++ V+L++N DG F V R
Sbjct: 888 GKTSPLPQSEDSSLEQRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRN---- 943
Query: 177 VHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAA 210
+ +GDKF+S HGQKG +G T L+E
Sbjct: 944 IRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECL 1003
Query: 211 LGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 269
LGK + G ATPF T I + L+ +G + G ++ + L
Sbjct: 1004 LGKVSSQTGDEGDATPFTDVTVQAIAD--------TLHNLGYQKHGNEVMYSGHTGRRL- 1054
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
+ IF TFYQ+ HM +DK+ R+ G LT +P+ R R GG+
Sbjct: 1055 -------------TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGL 1101
Query: 330 EFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICN 374
GEM+ DCLI+HG++ L +RL + +AN+ + CR C
Sbjct: 1102 RMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFE---CRTCR 1158
Query: 375 SADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
+ I + ++PY KLL QEL +M I + T
Sbjct: 1159 NKTQISQVHIPYSCKLLFQEL-MAMSIAPRLFT 1190
>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Oryzias latipes]
Length = 1120
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 142/502 (28%), Positives = 205/502 (40%), Gaps = 125/502 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 647 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 703
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 704 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 763
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K ++ +P+ DD L ++ D++IGK +
Sbjct: 764 ESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEND 823
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 824 DELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 879
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 880 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK 939
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + VS LL+ G G ++ + L
Sbjct: 940 GEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRGNEVLYNGFTGRKL--------- 983
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 984 -----TSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1038
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1039 CQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLIRMP 1098
Query: 386 YGAKLLSQELSFSMGITLKFDT 407
Y KLL QEL SM I + T
Sbjct: 1099 YACKLLFQEL-MSMSIAPRMMT 1119
>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
Length = 576
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 169/418 (40%), Gaps = 111/418 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 188 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 244
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 245 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 304
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 305 EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDD 364
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 365 SQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 420
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 421 SSRHGQKGTIGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 480
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 481 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 521
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ D
Sbjct: 522 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 576
>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
12710]
gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
12710]
Length = 1156
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 129/489 (26%), Positives = 200/489 (40%), Gaps = 127/489 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
++G++ IIP + + Y++ + Q++G + N R+DT L YPQ+PL
Sbjct: 680 IMGITASIIPYAEHNQSPRNS--YEAAM-AKQSLGLYSANFQRRMDTHGHLLHYPQKPLV 736
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRSE--------SY 95
+ G RP ED+L+MN++S++ G+ RS Y
Sbjct: 737 QTRAMEVNGYNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEY 796
Query: 96 KAEVDNKDIQVKSRPS---------------DDMLNFGKIQSKSGDIVIGKYAE------ 134
+ +D ++ PS +D + + K GD++IGK +
Sbjct: 797 RYPGGQED-KITIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKGGDVLIGKISPPRFMTA 855
Query: 135 ----IGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+GA D S+ +H E+G+V V+++++ DG +R + LGDK
Sbjct: 856 QEYTVGAGITRQDASVVTRHGEKGIVDLVMVTTDIDGNRLVKARVRD----LRIPELGDK 911
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DG 218
F+S HGQKGV+G L T QL+E+ GK A +G
Sbjct: 912 FASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRMTVGQLIESIAGKAAALEG 971
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF H+ + L+ + +H + +E D
Sbjct: 972 RFVDATPF-----------HKEPIENLMITLK----------RHGYPMSGYETMYDGRTG 1010
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
L ++ IF I +YQ+ HM DK+ R G Q LT +P R + GG+ FGEM+ DC
Sbjct: 1011 EIL-KTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAKEGGLRFGEMEVDC 1069
Query: 339 LIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPY 386
L+ HGAS L E++ K+ I R+ G C I + V Y
Sbjct: 1070 LVGHGASLLLKEQMLDKSDKTTIYVCELCGHIGYYDRIRGKYVCPIHKDKGKLKPVKVSY 1129
Query: 387 GAKLLSQEL 395
KLL QEL
Sbjct: 1130 AFKLLVQEL 1138
>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
Length = 1171
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/513 (26%), Positives = 205/513 (39%), Gaps = 140/513 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N R+DT+ L YPQ+P
Sbjct: 680 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYCSNFRARMDTMANVLNYPQKP 736
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDSL+MNQ++++ G FRS Y+ +D
Sbjct: 737 LVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQ 796
Query: 102 K-------------------DIQVKSRPS-------------DDMLNFGKIQSKSGDIVI 129
+ + + SR + +D L + DI+I
Sbjct: 797 ERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIII 856
Query: 130 GKYAEI--GADHSIKLKHTER-----------GLVLKVLLSSNDDGKNFAVVSIRQSVNM 176
GK + + D S++ +H +R G++ V+L++N DG F V R
Sbjct: 857 GKTSPLPQSEDSSLEQRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRN---- 912
Query: 177 VHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAA 210
+ +GDKF+S HGQKG +G T L+E
Sbjct: 913 IRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECL 972
Query: 211 LGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 269
LGK + G ATPF T I + L+ +G + G ++ + L
Sbjct: 973 LGKVSSQTGDEGDATPFTDVTVQAIAD--------TLHNLGYQKHGNEVMYSGHTGRRL- 1023
Query: 270 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
+ IF TFYQ+ HM +DK+ R+ G LT +P+ R R GG+
Sbjct: 1024 -------------TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGL 1070
Query: 330 EFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICN 374
GEM+ DCLI+HG++ L +RL + +AN+ + CR C
Sbjct: 1071 RMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTF---ECRTCR 1127
Query: 375 SADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
+ I + ++PY KLL QEL +M I + T
Sbjct: 1128 NKTQISQVHIPYSCKLLFQEL-MAMSIAPRLFT 1159
>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
Length = 1174
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 205/502 (40%), Gaps = 125/502 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K ++ +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEIFEKPTRETCSGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPETD 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + VS LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKFDT 407
Y KLL QEL SM I + T
Sbjct: 1153 YACKLLFQEL-MSMSIAPRMMT 1173
>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
Length = 1187
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 204/500 (40%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ I+P + + YQS QA+G TN IR+DT+ FYPQ+P
Sbjct: 703 AMILGVCASIVPFPDHNQSPRN--TYQS-AMGKQAVGVFVTNFQIRMDTMGNICFYPQKP 759
Query: 62 L------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKA--EV 99
L I+ C EDSL+MN ASL+ G RS Y+ +
Sbjct: 760 LCVTRSMEYLRFSELPAGINTIVALSCYTGYNQEDSLIMNMASLDRGFHRSIYYRGYRDT 819
Query: 100 DNKDI----QVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEI---- 135
+NK I + +P DD L + D++IGK +
Sbjct: 820 ENKKILDPEETFEKPDRATTQGMRHAMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGD 879
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ K TE+G++ V+++ N+DG F + +R V +GD
Sbjct: 880 DALDPTAKKYTKKDASLFAKPTEKGIIDSVMVTINEDGYKFVKIRLRS----VRIPEVGD 935
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G + T L E K GA
Sbjct: 936 KFASRHGQKGTNGIMLRCEDMLFTPDGMQPDLIVNPHAIPSRMTIGHLFECLTSKVGAIK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF S +T Q VS +L+ + G ++ + +
Sbjct: 996 GEIGDATPFNPS----VTVQK---VSDILHEYEYQQRGNEVLYSGFTGRKM--------- 1039
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1040 -----NTQVFFGPTYYQRLKHMVNDKIHSRARGPVQLLNRQPMEGRSRDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGAS L ERL +V N+ + + + CR C++ +I + +P
Sbjct: 1095 CQIAHGASQFLKERLFEVSDPYRVHVCNLCGLICVANLTSNSFECRSCSNKTNISQVRMP 1154
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1155 YACKLLFQEL-MSMQIAPRM 1173
>gi|134045261|ref|YP_001096747.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
C5]
gi|132662886|gb|ABO34532.1| DNA-directed RNA polymerase, subunit B' [Methanococcus maripaludis
C5]
Length = 611
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 205/499 (41%), Gaps = 120/499 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + S Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMSKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ ++N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSTFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R D N G + +SGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEDAYRNLGDDGLIDLESNVRSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEGNRLGKVRVRD----LRIPEFGDKF 364
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQL 245
+S HGQKGV+G + P + L D +++ +A P + G Q+
Sbjct: 365 ASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINPHAIPSRMTIG------------QV 410
Query: 246 LNCIGA--------RNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLI 286
L IG R G F + K+ F E D + L I
Sbjct: 411 LEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL-ECDI 469
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F + +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+
Sbjct: 470 FVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAM 529
Query: 347 NLHERL-------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYG 387
L ERL KC +A + G +C +C ++D I + Y
Sbjct: 530 LLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYA 588
Query: 388 AKLLSQELSFSMGITLKFD 406
KLL EL SMGI K +
Sbjct: 589 FKLLLDELK-SMGIDPKLE 606
>gi|340624672|ref|YP_004743125.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
X1]
gi|339904940|gb|AEK20382.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
X1]
Length = 611
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 138/491 (28%), Positives = 206/491 (41%), Gaps = 104/491 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + S Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMSKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ ++N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R + N G + + KSGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVKSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEGNRLGKVRVRD----LRIPEFGDKF 364
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQL 245
+S HGQKGV+G + P + L D +++ +A P + G V+ S
Sbjct: 365 ASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGS-- 420
Query: 246 LNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 294
L C R G F + K+ F E D + L IF + +YQ
Sbjct: 421 LEC--RRIDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL-ECDIFVGVAYYQ 477
Query: 295 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-- 352
+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+ L ERL
Sbjct: 478 KLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLD 537
Query: 353 -----------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQEL 395
KC +A + G +C +C ++D I + Y KLL EL
Sbjct: 538 ESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDEL 596
Query: 396 SFSMGITLKFD 406
SMGI K +
Sbjct: 597 K-SMGIDPKLE 606
>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
Length = 1176
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 205/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +A D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P+ DD + I+ D++IGK +
Sbjct: 819 ESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTRRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G +F +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISALLQEYGYQLRGNEVMFNGHSGR----------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|150402531|ref|YP_001329825.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
C7]
gi|150033561|gb|ABR65674.1| RNA polymerase Rpb2 domain 6 [Methanococcus maripaludis C7]
Length = 611
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 137/498 (27%), Positives = 207/498 (41%), Gaps = 118/498 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + S Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMSKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ ++N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSTFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R + N G + + +SGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEGNRLGKVRVRD----LRIPEFGDKF 364
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQL 245
+S HGQKGV+G + P + L D +++ +A P + G V+ S
Sbjct: 365 ASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGS-- 420
Query: 246 LNCIGARNSGITFI---------------FKHYFLFCLFECPMDWIAFICLVRSL---IF 287
L C R G F FKH+ +++ R L IF
Sbjct: 421 LEC--RRIDGTIFSGESEWKLREGLEKYGFKHHAKEAMYDGKSG--------RKLECDIF 470
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+
Sbjct: 471 VGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAML 530
Query: 348 LHERL-------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGA 388
L ERL KC +A + G +C +C ++D I + Y
Sbjct: 531 LKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAF 589
Query: 389 KLLSQELSFSMGITLKFD 406
KLL EL SMGI K +
Sbjct: 590 KLLLDELK-SMGIDPKLE 606
>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
Length = 1151
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 205/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +A D+
Sbjct: 734 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDS 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P+ DD + I+ D++IGK +
Sbjct: 794 ESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPEND 853
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 854 DELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 910 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G +F +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISALLQEYGYQLRGNEVMFNGHSGR----------- 1011
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1012 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1126 RLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
EJ3]
gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
gammatolerans EJ3]
Length = 1122
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 122/448 (27%), Positives = 195/448 (43%), Gaps = 101/448 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I +G RP
Sbjct: 676 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYGGYNM 735
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-----------VDNKDIQVKSRPSD-------- 112
ED++V+N+AS+E G+ RS +Y+AE + D +K D
Sbjct: 736 EDAIVINKASIERGLARSTFFRTYEAEEKRYLGGQMDRFEKPDPTIKGYLGDRYYRNLDE 795
Query: 113 DMLNFGKIQSKSGDIVIGKYAE---------IGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + + D+++G+ + +G + S+ ++ +E+G+V KV++
Sbjct: 796 DGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIALQERRETSVAVRPSEKGIVDKVII 855
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 856 TETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTENGIVP 909
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 910 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGF 965
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 966 KHTGREVMY----DGITGRRL-EADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1020
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGP 368
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + G
Sbjct: 1021 EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKV 1080
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1081 YCPVCGEEERISKVEMSYAFKLLLDELK 1108
>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
Length = 1175
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS Y++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQ 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P+ DD + ++ D+VIGK +
Sbjct: 819 ESKRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+++ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G +F +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISSLLQEYGYQLRGNEVMFNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
Length = 1175
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS Y++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQ 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P+ DD + ++ D+VIGK +
Sbjct: 819 ESKRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+++ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISSLLQEYGYQLRGNEVMYNGHTGR----------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ---KINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
Length = 1122
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 195/448 (43%), Gaps = 101/448 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I +G RP
Sbjct: 676 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYQGYNM 735
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-----------VDNKDIQVKSRPSD-------- 112
ED++++N+AS+E G+ RS +Y+AE + D +K D
Sbjct: 736 EDAIIINKASIERGLARSTFFRTYEAEEKRYLGGQMDRFEKPDPTIKGYLGDRYYRNLDE 795
Query: 113 DMLNFGKIQSKSGDIVIGKYAE---------IGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + + D+++G+ + +G + S+ ++ +E+G+V KV++
Sbjct: 796 DGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIALQERRETSVAVRPSEKGIVDKVII 855
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 856 TETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTENGIVP 909
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 910 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEERLRKELEELGF 965
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 966 KHTGREVMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1020
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGP 368
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + G
Sbjct: 1021 EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKV 1080
Query: 369 YCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1081 YCPVCGEEERISKVEMSYAFKLLLDELK 1108
>gi|159905694|ref|YP_001549356.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
C6]
gi|159887187|gb|ABX02124.1| RNA polymerase Rpb2 domain 6 [Methanococcus maripaludis C6]
Length = 611
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 206/499 (41%), Gaps = 120/499 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + S Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMSKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ ++N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSTFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R + N G + + +SGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEGNRLGKVRVRD----LRIPEFGDKF 364
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQL 245
+S HGQKGV+G + P + L D +++ +A P + G Q+
Sbjct: 365 ASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINPHAIPSRMTIG------------QV 410
Query: 246 LNCIGA--------RNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLI 286
L IG R G F + K+ F E D + L I
Sbjct: 411 LEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL-ECDI 469
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F I +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+
Sbjct: 470 FVGIAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAM 529
Query: 347 NLHERL-------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYG 387
L ERL KC +A + G +C +C ++D I + Y
Sbjct: 530 LLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYA 588
Query: 388 AKLLSQELSFSMGITLKFD 406
KLL EL SMGI K +
Sbjct: 589 FKLLLDELK-SMGIDPKLE 606
>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
Length = 1083
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 204/500 (40%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 610 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 666
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 667 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 726
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
K +V +P+ DD L ++ D++I K +
Sbjct: 727 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENE 786
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 787 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 842
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 843 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 902
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 903 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 944
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 945 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1001
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1002 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1061
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1062 YACKLLFQEL-MSMSIAPRM 1080
>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
Length = 1122
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 125/449 (27%), Positives = 193/449 (42%), Gaps = 103/449 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++GF N IRVDT + YPQ PL I +G RP
Sbjct: 676 QSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYSGYNM 735
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-------------VDNKDIQ------VKSRPSD 112
ED+++MN+AS+E G+ RS +Y+AE V + IQ +
Sbjct: 736 EDAVIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEVPDPTIQGYLGEKYYRHLDE 795
Query: 113 DMLNFGKIQSKSGDIVIGKYAE---------IGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + D+++G+ + +G + S+ ++ +ERG+V KV++
Sbjct: 796 DGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSVTVRPSERGIVDKVII 855
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG ++ R + LGDKF+S HGQKGV+G + P + +
Sbjct: 856 TETGDGTKLVKITTRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVP 909
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ G R G FI F
Sbjct: 910 DLIVNPHGIPSRMTVGQLI----EAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF 965
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 966 KHSGREIMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1020
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R G
Sbjct: 1021 EGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKR-RGK 1079
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1080 VYCPVCGEEERISKVEMSYAFKLLLDELK 1108
>gi|336253134|ref|YP_004596241.1| DNA-directed RNA polymerase subunit B [Halopiger xanaduensis SH-6]
gi|242392250|dbj|BAH80362.1| RNA polymerase subunit B' [Halopiger xanaduensis SH-6]
gi|335337123|gb|AEH36362.1| DNA-directed RNA polymerase subunit B [Halopiger xanaduensis SH-6]
Length = 609
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 130/495 (26%), Positives = 206/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLMFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDIQ------VKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D++ + +D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEDAYAHLDEDGLVNPETEVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E+ L L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTESGLVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L + G R G F+ + FE + + + + IF
Sbjct: 416 EMIGGKLGSLEGRRVDGTPFLGEDEDKLREGLEEAGFESSGKETMYSGVTGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREYIPICANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|45358925|ref|NP_988482.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
S2]
gi|45047791|emb|CAF30918.1| Glycoside hydrolase, family 1:DNA-directed RNA polymerase, beta
subunit:ATP/GTP-binding site motif A (P-loop)
[Methanococcus maripaludis S2]
Length = 611
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 207/491 (42%), Gaps = 104/491 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + S Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMSKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ ++N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFGK-----IQS--KSGDIVIGKYA-------- 133
++D ++ K R + N G ++S KSGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEGNRLGKVRVRD----LRIPEFGDKF 364
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQL 245
+S HGQKGV+G + P + L D +++ +A P + G V+ S
Sbjct: 365 ASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGS-- 420
Query: 246 LNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 294
L C R G F + K+ F E D + L IF + +YQ
Sbjct: 421 LEC--RRIDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL-ECDIFVGVAYYQ 477
Query: 295 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-- 352
+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+ L ERL
Sbjct: 478 KLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLD 537
Query: 353 -----------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQEL 395
KC +A + G +C +C ++D I + Y KLL EL
Sbjct: 538 ESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDEL 596
Query: 396 SFSMGITLKFD 406
SMGI K +
Sbjct: 597 K-SMGIDPKLE 606
>gi|320593507|gb|EFX05916.1| DNA-directed RNA polymerase beta [Grosmannia clavigera kw1407]
Length = 1165
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 135/484 (27%), Positives = 205/484 (42%), Gaps = 93/484 (19%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 693 ILGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFHRIDTLLYTLVYPQRPMV 749
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS++ C VFR Y AE
Sbjct: 750 ATKTIELVHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGYGRCQVFRK--YVAE 807
Query: 99 V------------------DNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAE------ 134
+ D + I + +D L + + GD++I K +
Sbjct: 808 MQRFPNGRTERVGGPERDKDGEKISKHAAIDNDGLAAVGWRVQHGDVMIKKESPVDLTTT 867
Query: 135 -IGADH--------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
IGAD S+ + + V KV++S + V RQ+ +GDK
Sbjct: 868 GIGADRGSNEYRDSSLTYRINDPSYVDKVMVSQTEKDTLIFKVQTRQT----RRPEIGDK 923
Query: 186 FSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQ 244
FSS HGQKGV+G + EQ ++ L D +M+ P + + + + +
Sbjct: 924 FSSRHGQKGVVGIIVEQEDMPFADSGL---VPDIIMN---PHGYPSRMTVGKLFECLTGK 977
Query: 245 LLNCIGARNSGITFIFKHYFLFCLFE----CPMDWIAFICL--------VRSLIFTWITF 292
G R+ G F+ + + + E W C + + IF +
Sbjct: 978 ASVVAGRRDYGYGDAFRSHPVEAMGEELVRHGFSWAGKDCFTSGTTGEPMEAHIFNGPIY 1037
Query: 293 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1038 YQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERL 1097
Query: 353 KCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKF 405
+ A + + G YC+ C S D+ + +PY AKLL QEL S ++G+ L+
Sbjct: 1098 MFSSDATSLDLCQHCGLFGYKGYCQTCRSTRDVTQMTMPYAAKLLVQELISMNVGVRLQL 1157
Query: 406 DTQL 409
+ +
Sbjct: 1158 EDEF 1161
>gi|297619553|ref|YP_003707658.1| DNA-directed RNA polymerase subunit B [Methanococcus voltae A3]
gi|297378530|gb|ADI36685.1| DNA-directed RNA polymerase subunit B [Methanococcus voltae A3]
Length = 611
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 206/494 (41%), Gaps = 112/494 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + S Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMSKQSLGVPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ ++N+AS+E G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASIERGLGRSSFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-----KIQSK--SGDIVIGKYA-------- 133
++D ++ K R N G +++S+ SGD++IGK +
Sbjct: 249 RYPGGQLDRFEVPEKGVRGYRAEGAYRNLGGDGLIELESEVSSGDVIIGKTSPPRFLEEN 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G V V+LS +G + V +R S LGDKF
Sbjct: 309 EISLQQKSQRRDTSVTIRHGEEGTVDLVILSETKEGNRLSKVRVRDS----RIPELGDKF 364
Query: 187 SSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQL 245
+S HGQKGV+G + P + L D +++ +A P + G V+ S
Sbjct: 365 ASRHGQKGVIGLV--VPQEDLPFTEDGVIPDLIINPHAVPSRMTIGQVLEMIGGKVGS-- 420
Query: 246 LNCIGARNSGITFI---------------FKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
L+C R G F FKH ++E C V F +
Sbjct: 421 LDC--RRIDGTIFSGEGEWSLRDALEAHGFKHNGKETVYEG-KSGKKLECEV----FVGV 473
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+ L E
Sbjct: 474 AYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKE 533
Query: 351 RL-------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGAKLL 391
RL KC +A + G YC IC +D I + Y KLL
Sbjct: 534 RLLDESDPHEDYVCAKCGEIA-IYDFKRGIKYCPICGEVEDVQDNRKIPSVKIAYAFKLL 592
Query: 392 SQELSFSMGITLKF 405
EL SMGI K
Sbjct: 593 LDELK-SMGIDPKL 605
>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
Length = 1099
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 204/500 (40%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 626 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 682
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ FRS SYK +
Sbjct: 683 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRSFFRSVFYRSYKEQ 742
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 743 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 802
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 803 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 858
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 859 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 918
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 919 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 960
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 961 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1017
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1018 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1077
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1078 YACKLLFQEL-MSMSIAPRM 1096
>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
Length = 1150
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS Y++ D
Sbjct: 734 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKDQ 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D++IGK +
Sbjct: 794 ESKRIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPEND 853
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+++ N +G F+ + +R V +GD
Sbjct: 854 DELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 910 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIVINPHAIPSRMTIGHLIECLQGKVSANK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISSLLQEYGYHLRGNEVMYNGHTGRK---------- 1012
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1013 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1126 RLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
Length = 1209
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 212/484 (43%), Gaps = 99/484 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G+ IP + + YQ+ Q+IG + N R+DT+ L+YPQ+P
Sbjct: 732 SMIMGICASFIPFSHHNQSPRN--TYQAA-MGKQSIGIYSLNFQHRMDTMAHILYYPQKP 788
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKA---- 97
L I+ + C EDS++M+Q S++ G+FRS Y+
Sbjct: 789 LVTTRFLNYSASKNFPNGINAIVATACYTGYNQEDSIIMSQDSIDRGLFRSVFYRCYRDE 848
Query: 98 ------------EVDNKD----IQVKSRPSDDMLNFGKIQSK-SG-DIVIGKYAEIG--- 136
E+ NK +++ S D+ F + S+ SG D++IGK
Sbjct: 849 EKKKTNGFKETFEIPNKSECIGLKIGSYEKLDLDGFVQEGSRISGEDVIIGKTVPFTNGI 908
Query: 137 ---------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
D SI ++ E G+V K+++ +++ G + IR +
Sbjct: 909 SQKKILKFKKNPKYKKDASILARNCEVGVVDKIMIGTSEYGNRLVKIRIRS----IRIPQ 964
Query: 182 LGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSF 241
+GDKF+S HGQKG+LG + L G + +A P + G V ++
Sbjct: 965 VGDKFASRHGQKGILG-MAYKQYDLPFTTEGMSPDIIMNPHAIPSRMTIGHV----YECL 1019
Query: 242 VSQLLNCIGARNSGITF-------IFKHYFLFCLFECPMDWIAFIC-----LVRSLIFTW 289
++++ G G F I KH + + W A I +++LIF
Sbjct: 1020 LAKISAISGIEGDGTPFSSISIEKIMKHLKNYGYDKS--GWEAMINGFTGKFLKNLIFIG 1077
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
T+YQ+ HM +DK+ R+ G Q LT +PV R R+GG+ FGEM+ DC+++HG+ L
Sbjct: 1078 PTYYQKLKHMVDDKIHSRSRGPVQILTRQPVEGRSRYGGLRFGEMERDCILSHGSIVFLK 1137
Query: 350 ERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-S 396
+RL ++ VI R + CR C++ I +PY KLL QEL +
Sbjct: 1138 DRLLDQSDPFVIFVCDLCGLIAIGNRKLKIFECRSCDNKMFISLIKIPYACKLLLQELIA 1197
Query: 397 FSMG 400
S+G
Sbjct: 1198 LSIG 1201
>gi|242392344|dbj|BAH80385.1| RNA polymerase subunit B' [Haloterrigena saccharevitans]
Length = 609
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 205/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETEVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFT 288
+ +L + G R G F+ K L E D + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDKDELREGLEEAGFDSAGKETMYSGISGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
5348]
gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Metallosphaera sedula DSM 5348]
Length = 1124
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 202/482 (41%), Gaps = 95/482 (19%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N IR DT L YPQ+P+
Sbjct: 644 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQIRTDTRAHLLHYPQKPIV 700
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAEVD 100
+ +G RP ED+++MN++S++ G+FRS Y AE
Sbjct: 701 QTRALEAIGYTERPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAE-- 758
Query: 101 NKDIQVKSRPSDDML--------NFGK---------------IQSKSGDIVIGK------ 131
+I+ D++L GK + K GD++IGK
Sbjct: 759 --EIKYPGGQEDEILLPEPGVRGYKGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRF 816
Query: 132 ---YAEIGADH-----SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
+ E+ D SI +H ERG V VL++ +G V +R + +G
Sbjct: 817 LQEFKELSPDQAKRDTSIITRHGERGTVDLVLVTETSEGNKLVKVRVRD----LRIPEIG 872
Query: 184 DKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFV 242
DKF++ HGQKGV+G L P + D +++ +A P + G ++ FV
Sbjct: 873 DKFATRHGQKGVIGML--IPQVDMPYTTSGLVPDIILNPHALPSRMTVGQIMEAIAGKFV 930
Query: 243 SQLLNCIGAR---NSGITFI----FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQ 295
+ N I A N+ I I +H +L E D L ++F I +YQ+
Sbjct: 931 AATGNPIDATPFYNTPIEEIQRKLLEHGYLSDGSEVVYDGRTGEKLKGRILF-GIVYYQK 989
Query: 296 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL--- 352
HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI +GA+ + +RL
Sbjct: 990 LHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDN 1049
Query: 353 -------KCKNVANV--IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 403
C+ V R C I + + Y KLL QEL SM I
Sbjct: 1050 SDRATVYVCEQCGYVGWYDRTKNKYICPIHGDKTTLYPVVISYAFKLLLQEL-MSMVIAP 1108
Query: 404 KF 405
K
Sbjct: 1109 KL 1110
>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
Length = 1176
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL LFYP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLFYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISSLLQEYGYHLRGNEVMYNGHTGR----------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
Length = 1174
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 206/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MN +++E G+FRS Y++ D
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGLFRSVFYRSYKDS 817
Query: 101 ----NKDIQVK-SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
N D + + +P+ DD + ++ D+VIGK +
Sbjct: 818 ESKRNGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1093 CQIAHGAAQFLRERLFEVSDPYRIHICNLCGLIAIANMRNNTFE---CKGCKNKTQISQV 1149
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1150 KLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
Length = 1173
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 200/490 (40%), Gaps = 124/490 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSIIINASAVERGFFRSVFYRSYRDA 817
Query: 101 ------NKDIQ---------------VKSRPSDDMLNFGKIQSKSGDIVIGKYAEI---- 135
++D Q + + +D + ++ D+VIGK +
Sbjct: 818 EVRRLGDQDEQFEKPNRLTCQGMRHAIYDKLDEDGIIAPGVRVSGDDVVIGKTITLMENE 877
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DELESVTKKYTKRDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ Y
Sbjct: 994 GEIGDATPFNDAV-------NVQKISHLLQEYGYNLRGNEIMYNGYTGRK---------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ----INAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPLEGRARDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERLKCK------NVAN-----VIQRVVGGPY-CRICNSADDIIKANVP 385
C I+HGA+ L ERL +V N VI + + C+ C + I + ++P
Sbjct: 1093 CQISHGAAQFLRERLFTVSDPYRIHVCNLCGLIVIANLRNNTFECKSCKNKTQISQVHLP 1152
Query: 386 YGAKLLSQEL 395
Y +KLL QEL
Sbjct: 1153 YASKLLMQEL 1162
>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 1120
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 197/454 (43%), Gaps = 104/454 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I +G RP
Sbjct: 674 QSLGLGWANFRIRVDTRGHFMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYQGYNM 733
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-------------VDNKDIQ------VKSRPSD 112
ED+++MN+AS+E G+ RS +Y+AE V + IQ +
Sbjct: 734 EDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEVPDPTIQGYLGEKYYRHLDE 793
Query: 113 DMLNFGKIQSKSGDIVIGKYA----------------EIGADHSIKLKHTERGLVLKVLL 156
D + F + + + D+++G+ + + + S+ ++ +E+G+V KV++
Sbjct: 794 DGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSVAVRPSEKGIVDKVII 853
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + GDKF+S HGQKGV+G + P + +
Sbjct: 854 TETGDGTKLVKVTVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVP 907
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 908 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEERLRKELEELGF 963
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 964 KHSGREVMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1018
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R G
Sbjct: 1019 EGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWACESCGHLALEDKR-RGK 1077
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
YC +C + I K + Y KLL EL +MGI
Sbjct: 1078 VYCPVCGEEEKISKVEMSYAFKLLLDELK-AMGI 1110
>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
KOD1]
gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
KOD1]
Length = 1123
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 124/449 (27%), Positives = 197/449 (43%), Gaps = 103/449 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I +G RP
Sbjct: 677 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNM 736
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-------------VDNKDIQ------VKSRPSD 112
ED++++N+AS+E G+ RS +Y+AE V + +IQ +
Sbjct: 737 EDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDE 796
Query: 113 DMLNFGKIQSKSGDIVIGK---------YAEIGA-------DHSIKLKHTERGLVLKVLL 156
D L F + + + D+++G+ + +G+ + S+ ++ +E+G+V KV++
Sbjct: 797 DGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIV 856
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 857 TETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVP 910
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 911 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGF 966
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 967 KHSGREIMY----DGITGRRL-EADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1021
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R G
Sbjct: 1022 EGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKR-RGK 1080
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1081 VYCPVCGEDERISKVEMSYAFKLLLDELK 1109
>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
crassa OR74A]
gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
[Neurospora crassa]
gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1155
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 139/487 (28%), Positives = 203/487 (41%), Gaps = 99/487 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+ASL+ C VFR Y AE
Sbjct: 740 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRK--YTAE 797
Query: 99 V----------------DNKDIQVKSRPSDDMLNFGKIQSK--SGDIVIGKYAEIGA--- 137
+ D D + D ++ SK SG +I K +
Sbjct: 798 LQGYTNGRRDRVGGIMKDEDDKPIVKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 857
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D S + ++ ++ KV++S N+ V RQ+ LGDK
Sbjct: 858 GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQT----RRPELGDK 913
Query: 186 FSSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITE 236
FSS HGQKGV+G + E P + + M+ F TG VI
Sbjct: 914 FSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAG 973
Query: 237 QHQ-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ +F S + +G + G ++ K YF + PM+ + I+
Sbjct: 974 EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPME---------AYIYNG 1024
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
FYQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1025 PIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1084
Query: 350 ERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGIT 402
ERL + +V Q + G YC C S ++ + +PY KLL QEL S ++G+
Sbjct: 1085 ERLMISSDGTELDVCQECGLFGYKGYCNACKSTRNVTQMTMPYACKLLVQELISMNVGVK 1144
Query: 403 LKFDTQL 409
LK + +
Sbjct: 1145 LKLEDEF 1151
>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
Length = 1172
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 699 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPMKP 755
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 756 LVTTRSMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 815
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ +D + I+ D++IGK +
Sbjct: 816 ETKRLGDQEEQFEKPTRQSCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPEND 875
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 876 DELEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 931
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK GA
Sbjct: 932 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGANK 991
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 992 GEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK---------- 1034
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1035 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1090
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1091 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFE---CKGCKNKTQISQV 1147
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1148 RLPYAAKLLFQEL-MSMNIAPRL 1169
>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
Length = 1174
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDA 817
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 818 ESKRLGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1093 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1149
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1150 RLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
Length = 1117
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 194/447 (43%), Gaps = 100/447 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGYEDRPAGQNFIVAVLAYQGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDIQVKS-----------RPSD 112
ED++++N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPAPTVRGYRGEKYYRNLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYA------EIG---------ADHSIKLKHTERGLVLKVLLS 157
D L F + + + D++IG+ + E G + S+ ++ +E+G+V KV+++
Sbjct: 792 DGLIFPESRVEGKDVLIGRTSPPRFLEERGLGSVALQERRETSVAVRPSEKGVVDKVIIT 851
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 217
DG V++R + LGDKF+S HGQKGV+G + P + + D
Sbjct: 852 ETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPD 905
Query: 218 GLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FK 261
+++ + P + G +I ++ ++ + G R G FI FK
Sbjct: 906 LIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGFK 961
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
H ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 HTGREIMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1016
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGPY 369
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + Y
Sbjct: 1017 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAIEDKRRHKVY 1076
Query: 370 CRICNSADDIIKANVPYGAKLLSQELS 396
C +C + I K + Y KLL EL
Sbjct: 1077 CPVCGEEERISKVEMSYAFKLLLDELK 1103
>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
2508]
gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
[Neurospora tetrasperma FGSC 2509]
Length = 1155
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 139/487 (28%), Positives = 203/487 (41%), Gaps = 99/487 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+ASL+ C VFR Y AE
Sbjct: 740 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRK--YTAE 797
Query: 99 V----------------DNKDIQVKSRPSDDMLNFGKIQSK--SGDIVIGKYAEIGA--- 137
+ D D + D ++ SK SG +I K +
Sbjct: 798 LQGYTNGRRDRVGGIMKDEDDKPIVKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 857
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D S + ++ ++ KV++S N+ V RQ+ LGDK
Sbjct: 858 GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQT----RRPELGDK 913
Query: 186 FSSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITE 236
FSS HGQKGV+G + E P + + M+ F TG VI
Sbjct: 914 FSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAG 973
Query: 237 QHQ-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ +F S + +G + G ++ K YF + PM+ + I+
Sbjct: 974 EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPME---------AYIYNG 1024
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
FYQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1025 PIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1084
Query: 350 ERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGIT 402
ERL + +V Q + G YC C S ++ + +PY KLL QEL S ++G+
Sbjct: 1085 ERLMISSDGTELDVCQECGLFGYKGYCNACKSTRNVTQMTMPYACKLLVQELISMNVGVK 1144
Query: 403 LKFDTQL 409
LK + +
Sbjct: 1145 LKLEDEF 1151
>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
Length = 952
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 176/420 (41%), Gaps = 113/420 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 562 SMILGICASIIPFPDHNQSPRNC--YQSAM-GKQAMGVFLTNFDVRMDTMANILYYPQKP 618
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 619 LATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 678
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A I D
Sbjct: 679 EKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDS 738
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE GLV +VL+++N +G F V +R + +GD
Sbjct: 739 EEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTT----KIPQIGD 794
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G +++Q T A L+E L K
Sbjct: 795 KFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLR 854
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G + G ++ + +
Sbjct: 855 GLEGDATPF--------TEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMM-------- 898
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 899 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 952
>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
Length = 1150
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N ++E G FRS Y++ D
Sbjct: 734 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDA 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 794 ESKRIGDQEEQFEKPNRNNCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETD 853
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 854 DDLDGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 910 KFASRHGQKGTCGVQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +SQLL G G ++ +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISQLLQDYGYHLRGNEVMYNGHTGR----------- 1011
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1012 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1126 RLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
Length = 1175
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 202/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRLTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPEND 878
Query: 136 ----GA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GA D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGATKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G +F +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEIMFNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----ISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHICNFCGIIAIANMRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 KLPYAAKLLFQEL 1163
>gi|448383940|ref|ZP_21562938.1| DNA-directed RNA polymerase subunit B' [Haloterrigena
thermotolerans DSM 11522]
gi|242392346|dbj|BAH80386.1| RNA polymerase subunit B' [Haloterrigena thermotolerans]
gi|242392348|dbj|BAH80387.1| RNA polymerase subunit B' [Haloterrigena turkmenica]
gi|445658929|gb|ELZ11741.1| DNA-directed RNA polymerase subunit B' [Haloterrigena
thermotolerans DSM 11522]
Length = 609
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 204/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFT 288
+ +L + G R G F+ K L E D + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDKDELREGLEEAGFDSAGKETMYSGITGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
Length = 1175
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRATCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNE 878
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMAFTAEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
Length = 1150
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 132/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS ++A D
Sbjct: 734 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRAYKDA 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 794 ESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDTE 853
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 854 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 910 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1012
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1013 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1126 RLPYAAKLLFQEL 1138
>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
Length = 1175
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 136/506 (26%), Positives = 203/506 (40%), Gaps = 137/506 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++
Sbjct: 759 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRS---Y 815
Query: 102 KDIQVK---------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI- 135
KD + K RP+ DD + ++ D+VIGK +
Sbjct: 816 KDAESKRFCDQEEQFERPTRNTCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLP 875
Query: 136 --------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
D S L+++E G+V +V+++ N +G F + +R V
Sbjct: 876 DNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRS----VRIPQ 931
Query: 182 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-G 214
+GDKF+S HGQKG G E P L+E GK
Sbjct: 932 IGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVS 991
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G + ATPF + + +S LL G + G ++ +
Sbjct: 992 ANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGR-------- 1036
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM
Sbjct: 1037 ------KINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEM 1090
Query: 335 KCDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDI 379
+ DC IAHGA+ L ERL C +AN+ C+ C + I
Sbjct: 1091 ERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNSTFE---CKGCKNKTQI 1147
Query: 380 IKANVPYGAKLLSQELSFSMGITLKF 405
+ +PY AKLL QEL SM I +
Sbjct: 1148 SQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
Length = 1174
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 700 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 756
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 757 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 816
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 817 ESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 876
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 877 DELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 933 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 993 GEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK---------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1092 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1148
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1149 RLPYAAKLLFQEL-MSMNIAPRL 1170
>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1150
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 139/487 (28%), Positives = 203/487 (41%), Gaps = 99/487 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 678 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 734
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+ASL+ C VFR Y AE
Sbjct: 735 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRK--YTAE 792
Query: 99 V----------------DNKDIQVKSRPSDDMLNFGKIQSK--SGDIVIGKYAEIGA--- 137
+ D D + D ++ SK SG +I K +
Sbjct: 793 LQGYTNGRRDRVGGIMKDEDDKPIAKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 852
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D S + ++ ++ KV++S N+ V RQ+ LGDK
Sbjct: 853 GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQT----RRPELGDK 908
Query: 186 FSSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITE 236
FSS HGQKGV+G + E P + + M+ F TG VI
Sbjct: 909 FSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAG 968
Query: 237 QHQ-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ +F S + +G + G ++ K YF + PM+ + I+
Sbjct: 969 EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPME---------AYIYNG 1019
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
FYQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1020 PIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1079
Query: 350 ERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGIT 402
ERL + +V Q + G YC C S ++ + +PY KLL QEL S ++G+
Sbjct: 1080 ERLMISSDGTELDVCQECGLFGYKGYCNACKSTRNVKQMTMPYACKLLVQELISMNVGVK 1139
Query: 403 LKFDTQL 409
LK + +
Sbjct: 1140 LKLEDEF 1146
>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
118893]
gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
118893]
Length = 1210
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 128/489 (26%), Positives = 195/489 (39%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 743 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 803 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSYSNGTK 860
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 861 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 919
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 920 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 975
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 976 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIVSGQFGYGTP 1035
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + N G ++ K Y + P+ +
Sbjct: 1036 F----GGSPVEEMSAILV---------NHGFSYGGKDYLTSGITGEPLTY---------Y 1073
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1074 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1133
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + +C+ C S+ ++K +PY AKLL QEL FSM
Sbjct: 1134 QLLLERLMISSDRHEVDVCESCGFMGYSGWCQRCKSSAGVVKMVIPYAAKLLVQEL-FSM 1192
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1193 NVVARLRLQ 1201
>gi|242392390|dbj|BAH80408.1| RNA polymerase subunit B' [Natronorubrum aibiense]
Length = 609
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 129/493 (26%), Positives = 207/493 (41%), Gaps = 109/493 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + G+ G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + DD L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDDDGLVNPETKVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L P + + D +++ +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHL--APQEDMPFTQDGVVPDLVLNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L G R G F+ + F + + + + + IF
Sbjct: 416 EMIGGKLGAMEGRRVDGTPFLGEDESELRGGLEDAGFNSAGKEVMYSGVTGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL +C V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFD 406
E+ ++GI + +
Sbjct: 593 EMK-ALGIAPRLE 604
>gi|433592803|ref|YP_007282299.1| DNA-directed RNA polymerase subunit B [Natrinema pellirubrum DSM
15624]
gi|448335248|ref|ZP_21524398.1| DNA-directed RNA polymerase subunit B' [Natrinema pellirubrum DSM
15624]
gi|242392374|dbj|BAH80400.1| RNA polymerase subunit B' [Natrinema pellirubrum DSM 15624]
gi|433307583|gb|AGB33395.1| DNA-directed RNA polymerase subunit B [Natrinema pellirubrum DSM
15624]
gi|445617629|gb|ELY71223.1| DNA-directed RNA polymerase subunit B' [Natrinema pellirubrum DSM
15624]
Length = 609
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 207/496 (41%), Gaps = 111/496 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQ 237
LGDKF+S HGQKGV+G L P + + +G L+ +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHL--APQEDM-PFTEEGVVPDLVLNPHALPSRMTVGHIL--- 415
Query: 238 HQSFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIF 287
+ +L + G R G F+ K L E D + + + IF
Sbjct: 416 -EMIGGKLGSMEGRRVDGTPFLGEDKDELREGLEEAGFDSAGKETMYSGITGEKIEAEIF 474
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+
Sbjct: 475 VGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMT 534
Query: 348 LHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 535 LKERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLL 591
Query: 393 QELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 592 DEMK-ALGIAPRLELE 606
>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
Length = 1175
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDND 878
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL------KCKNVAN-----VIQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N I + + C+ C + I + +P
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYAIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLP 1153
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y AKLL QEL SM I +
Sbjct: 1154 YAAKLLFQEL-MSMSIAPRL 1172
>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1132
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 130/489 (26%), Positives = 200/489 (40%), Gaps = 115/489 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL + YPQ+P+
Sbjct: 670 ILGAVAGLIPYPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMV 726
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES---- 94
+ + ED+LV+N+AS + C +F+ S
Sbjct: 727 TTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQIFKKISMPLK 786
Query: 95 -----YKAEVDNKD---IQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH- 145
Y +D++D + + D ++ G + ++GD+ + K + I +I K
Sbjct: 787 AYGNGYTDRLDDRDPSNTRHRKIGKDGLVEVGS-ELENGDMYMLKASPINQSQAIPQKDQ 845
Query: 146 -----------TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
+ KV++++N+ + RQ+ +GDKFSS HGQKG
Sbjct: 846 KWSPMHMSYKLPDPSYADKVMITANEANTTILKIQTRQT----RRPEIGDKFSSRHGQKG 901
Query: 195 VLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFA 227
V+G L + T ++LE GK G G Y TPF
Sbjct: 902 VVGLLAEQADMPFSDSGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLTGKQEYGTPF- 960
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
GG E S + + ++ + I F +F P+
Sbjct: 961 ---GGSKVEDMGSILVKHGFSYSGKDHLTSGITGESLPFYVFFGPI-------------- 1003
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+YQ+ HM +DK+ R+TG LT +P R R GG+ GEM+ DCLIA+GAS
Sbjct: 1004 ----YYQKLKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQL 1059
Query: 348 LHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL + A+ + G +C+ C S+ + K +PY AKLL QEL M +
Sbjct: 1060 LLERLMISSDAHDVDVCQGCGMMGYNGWCQSCGSSRGVTKMTMPYAAKLLIQEL---MSM 1116
Query: 402 TLKFDTQLS 410
+K QL+
Sbjct: 1117 NVKASLQLA 1125
>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
Length = 1176
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----ISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
Length = 1176
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKSCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM 3638]
gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM 3638]
gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
Length = 1117
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 196/451 (43%), Gaps = 108/451 (23%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED++++N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPDPTVRGYRGEKYYRNLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYA------EIG---------ADHSIKLKHTERGLVLKVLLS 157
D L F + + + D+++G+ + E G + S+ ++ +E+G+V KV+++
Sbjct: 792 DGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQERRETSVAVRPSEKGVVDKVIIT 851
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 217
DG V++R + LGDKF+S HGQKGV+G + P + + D
Sbjct: 852 ETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPD 905
Query: 218 GLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FK 261
+++ + P + G +I ++ ++ + G R G FI FK
Sbjct: 906 LIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGFK 961
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
H ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 HTGREIMY----DGITGKRL-EADIFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1016
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI------QRVV 365
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ +RV
Sbjct: 1017 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRRRV- 1075
Query: 366 GGPYCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1076 ---YCPVCGEEERISKVEMSYAFKLLLDELK 1103
>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
Length = 1175
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPEND 878
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDQYRIHVCNFCGLIAIANMRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 1202
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 201/501 (40%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N +R+D+LL + YPQ+P+
Sbjct: 729 ILGAVAGLIPYPHHNQSPRNT--YQCA-MGKQAIGAIANNQFLRIDSLLYTMVYPQKPMV 785
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYKAE 98
+ + ED+LV+N+AS++ C VFR Y A
Sbjct: 786 KTRTIELVKYDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRK--YSAN 843
Query: 99 VDNKDIQVKSR------------------PSDDMLNFGKIQSKSGDIVI----------- 129
+ + K R SD + G+ S SG++ I
Sbjct: 844 LKSYSNGTKDRLLGPDRENGAPIRKHALLDSDGLAAVGEKVS-SGEVYINKVTPENALSS 902
Query: 130 --------GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
G A I + + KL + + KV++S+ + V RQ+
Sbjct: 903 GITGSDAGGPIAYIPSPQTYKL--PDPSYIDKVMISTTEGENQLLKVQTRQT----RRPE 956
Query: 182 LGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-G 214
+GDKFSS HGQKGV+G + + T ++LE +GK G
Sbjct: 957 VGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVVGKAG 1016
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
G Y TPF G + E VS+ G ++ K Y + P+
Sbjct: 1017 VLSGQFGYGTPFG---GSPVEEMSAILVSK----------GFSYGGKDYLTSGITGEPLP 1063
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ +FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM
Sbjct: 1064 ---------AYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM 1114
Query: 335 KCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKANV 384
+ DCLIA+G S L ERL C+N +G +C+ C ++ ++K +
Sbjct: 1115 ERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG--FMGYLG--WCQRCKTSRGVVKMAI 1170
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY AKLL QEL FSM + +F
Sbjct: 1171 PYAAKLLVQEL-FSMNVVARF 1190
>gi|429191195|ref|YP_007176873.1| DNA-directed RNA polymerase subunit B [Natronobacterium gregoryi
SP2]
gi|448326614|ref|ZP_21515963.1| DNA-directed RNA polymerase subunit B' [Natronobacterium gregoryi
SP2]
gi|242392378|dbj|BAH80402.1| RNA polymerase subunit B' [Natronobacterium gregoryi SP2]
gi|429135413|gb|AFZ72424.1| DNA-directed RNA polymerase subunit B [Natronobacterium gregoryi
SP2]
gi|445610906|gb|ELY64671.1| DNA-directed RNA polymerase subunit B' [Natronobacterium gregoryi
SP2]
Length = 609
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 207/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETKVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L P + + D +++ +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHL--APQEDMPFTEDGVVPDLVLNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTW 289
+L G R G F+ + L E D + V + IF
Sbjct: 417 MIGGKLGAMEGRRVDGTPFLGEDEEDLRDGLEEAGFDAAGKETMYSGITGEKVEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 IIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREYIPICGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 594 MK-ALGIAPRLELE 606
>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
Length = 1176
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
Length = 1176
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 204/504 (40%), Gaps = 133/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MN +++E G FRS SYK +
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYK-D 817
Query: 99 VDNKDI--------------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI--- 135
++K I + + DD + I+ D+VIGK +
Sbjct: 818 AESKRICDQEEQFEKPTRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDN 877
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+++E G+V +V+++ N +G F + +R V +G
Sbjct: 878 DDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRS----VRIPQIG 933
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD 217
DKF+S HGQKG G E P L+E GK + +
Sbjct: 934 DKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSN 993
Query: 218 -GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G + G ++ +
Sbjct: 994 KGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGR---------- 1036
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+
Sbjct: 1037 ----KINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMER 1092
Query: 337 DCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIK 381
DC IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1093 DCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNSTFE---CKGCKNKTQISQ 1149
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1150 VRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
Length = 1175
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 819 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
Length = 1175
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS +++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ +V +P+ DD + ++ D+VIGK +
Sbjct: 819 ESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTMTLPDNE 878
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|448303812|ref|ZP_21493758.1| DNA-directed RNA polymerase subunit B' [Natronorubrum
sulfidifaciens JCM 14089]
gi|242392394|dbj|BAH80410.1| RNA polymerase subunit B' [Natronorubrum sulfidifaciens JCM 14089]
gi|445592439|gb|ELY46626.1| DNA-directed RNA polymerase subunit B' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 609
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 206/492 (41%), Gaps = 109/492 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + DD L + + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDDDGLVNPETRVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L P + + D +++ +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHL--APQEDMPFTQDGVVPDLVLNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L G R G F+ + F + + + + + IF
Sbjct: 417 MIGGKLGAMEGRRVDGTPFLGEDESELREGLEDAGFNSAGKEVMYSGVTGEKIEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 IIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREFIHVCGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFD 406
+ ++GI + +
Sbjct: 594 MK-ALGIAPRLE 604
>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 650 AMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPMKP 706
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 707 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 766
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 767 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 826
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 827 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 882
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 883 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 942
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 943 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 985
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 986 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1041
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1042 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1098
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1099 RLPYAAKLLFQEL-MSMNIAPRL 1120
>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
Length = 1176
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V +P+ DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPNRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
Length = 1120
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 123/452 (27%), Positives = 193/452 (42%), Gaps = 109/452 (24%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N +R+DT L YPQ PL I +G RP
Sbjct: 674 QSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYHGYNM 733
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-----------VDNKDIQVKSRPSD-------- 112
ED++++N+AS+E G+ RS +Y+AE + D +K D
Sbjct: 734 EDAVIINKASIERGLGRSTFFRTYEAEEKRYLGGQTDRFEKPDPTIKGYLGDRYYRNLDE 793
Query: 113 DMLNFGKIQSKSGDIVIGKYA---------EIGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + + D+++G+ + +G + S+ + +E G+V KV++
Sbjct: 794 DGIIFPESRVEGKDVLVGRTSPPRFLEEQGRLGGIALQERRETSVAARPSEEGIVDKVII 853
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 854 TETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVVGLI--VPQEDMPWTESGIVP 907
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 908 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRRELEELGF 963
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH L+ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 964 KHNGREILY----DGITGRRL-EAEIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1018
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI------QRV 364
R R GG+ FGEM+ D LI HGA+ L ERL C+N ++ RV
Sbjct: 1019 EGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRDRV 1078
Query: 365 VGGPYCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1079 ----YCPVCGEEERISKVEISYAFKLLLDELK 1106
>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
Length = 1176
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
Length = 1174
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 205/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D+
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDS 817
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 818 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1093 CQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANMRNNTFE---CKGCKNKTQISQV 1149
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1150 RLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
Length = 1176
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
Length = 1150
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 734 LVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 794 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNE 853
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 854 DELEGSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 910 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1012
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1013 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1126 RLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
Length = 1179
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 195/484 (40%), Gaps = 112/484 (23%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL LFYPQ+P
Sbjct: 706 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLFYPQKP 762
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS Y++ D
Sbjct: 763 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKD- 821
Query: 102 KDIQVKSRPSDDMLNFGK--------------------------IQSKSGDIVIGKYAEI 135
Q R D F K I+ D++IGK +
Sbjct: 822 ---QECKRSGDQEEQFEKPTKETCQGMRNAIYDKLDEDGIIAPGIRVSGDDVIIGKTITL 878
Query: 136 GA---------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
D S L+++E G+V +V+++ N +G F + +R V
Sbjct: 879 PENDDELEGTTRRFTKRDASTFLRNSETGIVDQVMVTLNAEGYKFCKIRVRS----VRIP 934
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS------YATPFATSTGGVI 234
+GDKF+S HGQKG G + + C+GL +A P + G +I
Sbjct: 935 QIGDKFASRHGQKGTCGIQYRQEDMIF-------TCEGLTPDIIINPHAIPSRMTIGHLI 987
Query: 235 TEQHQSFVSQLLNCIGARN--------SGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 286
E Q VS IG I+ + + Y M + + I
Sbjct: 988 -ECLQGKVSANKGEIGDATPFNDTVNVQKISNLLQEYGYQLRGNEVMYNGQSGRKINAQI 1046
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+
Sbjct: 1047 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQ 1106
Query: 347 NLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLL 391
L ERL C +AN+ C+ C + I + +PY AKLL
Sbjct: 1107 FLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFE---CKGCKNKTQISQVRLPYAAKLL 1163
Query: 392 SQEL 395
QEL
Sbjct: 1164 FQEL 1167
>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
Length = 1211
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 196/489 (40%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 744 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 803
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 804 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSYSNGTK 861
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 862 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 920
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 921 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 976
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 977 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTP 1036
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + + G ++ K Y + P+ +
Sbjct: 1037 F----GGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLTY---------Y 1074
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1075 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1134
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + G +C+ C ++ ++K +PY AKLL QEL FSM
Sbjct: 1135 QLLLERLMISSDRHEVDVCEGCGFMGYSGWCQRCKTSAGVVKMVIPYAAKLLVQEL-FSM 1193
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1194 NVVARLRLQ 1202
>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
polypeptide
gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
Length = 1176
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
Length = 1126
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 201/498 (40%), Gaps = 126/498 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N +R DT L YPQ+PL
Sbjct: 645 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQKPLV 701
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------ESY 95
I D +G RP ED+++MN++S+E G++RS E
Sbjct: 702 GTKILDIIGYNDRPAGNNAILAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTEEL 761
Query: 96 KAEVDNKDIQVKSRP--------------SDDMLNFGKIQSKSGDIVIGK---------Y 132
K +D +K P D+ + +++ K GD++IGK +
Sbjct: 762 KYPGGQEDKIMKPEPGTKGYKGNEYYRLLEDNGIVSPEVEVKGGDVLIGKVSPPRFLQEF 821
Query: 133 AEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
E+ D SI +H E G+V VL++ + +G V +R + +GDKF+
Sbjct: 822 KELSPEQSKRDTSIVTRHGEMGIVDLVLVTESSEGNKLVKVRVRD----LRIPEIGDKFA 877
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGKG-ACDGLM 220
+ HGQKGV+G L T Q++EA GK A G
Sbjct: 878 TRHGQKGVIGMLIDQADMPYTVKGVVPDIILNPHALPSRMTIGQIMEALAGKYVALTGKP 937
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
ATPF S + E + G R SG+ L E D
Sbjct: 938 VDATPFIESPP--LEEIRK----------GIRESGL--------LPDGTEVVYDGRTGQK 977
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
L ++F I +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 978 LKGRILFG-IVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1036
Query: 341 AHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYG 387
G + + +RL KC + R C I ++ V Y
Sbjct: 1037 GFGTAMLIKDRLLDNSDKATIYVCDKCGYIG-WYDRARNKYVCPIHGENANLYPVTVSYA 1095
Query: 388 AKLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1096 FKLLLQEL-MSMVISPRL 1112
>gi|448330660|ref|ZP_21519939.1| DNA-directed RNA polymerase subunit B' [Natrinema versiforme JCM
10478]
gi|242392376|dbj|BAH80401.1| RNA polymerase subunit B' [Natrinema versiforme]
gi|445611164|gb|ELY64924.1| DNA-directed RNA polymerase subunit B' [Natrinema versiforme JCM
10478]
Length = 609
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 129/495 (26%), Positives = 207/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L P + + G D +++ +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVIGHL--APQEDMPFTEGGVVPDLVLNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFT 288
+ +L G R G F+ + L + D + + + IF
Sbjct: 416 EMIGGKLGAMEGRRVDGTPFLGEDEDELRSGLEDSGFDSAGKETMYSGVTGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHICANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|310798473|gb|EFQ33366.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1151
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 139/499 (27%), Positives = 199/499 (39%), Gaps = 124/499 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 680 VLGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 736
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
I++S ED+LV+N+AS + C VFR Y AE
Sbjct: 737 ISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YTAE 794
Query: 99 V-----------------DNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA---- 137
+ +N DD L + SG+++I K +
Sbjct: 795 LQKYPNGRRERIGDPVNDENGRTTKHEALDDDGLAIVGYKVNSGEVMIKKETPLDTGSTG 854
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D SI + + + KV++S + V RQ+ LGDKF
Sbjct: 855 IGMDRGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQT----RRPELGDKF 910
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DGL 219
SS HGQKGV+G + T +LLE GK + DG
Sbjct: 911 SSRHGQKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGR 970
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIA 277
Y F +F S L + A + G ++ K YF + P++
Sbjct: 971 KDYG--FG-----------DAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLE--- 1014
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ D
Sbjct: 1015 ------AYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERD 1068
Query: 338 CLIAHGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLL 391
CLIA+GAS L ERL + I + G YC C S ++ + +PY AKLL
Sbjct: 1069 CLIAYGASQLLLERLMISSDGTQIDICQQCGLFGYKGYCHTCKSTREVTQMTMPYAAKLL 1128
Query: 392 SQEL-SFSMGITLKFDTQL 409
QEL S ++G+ L+ + +
Sbjct: 1129 VQELISMNVGVRLQLEDEF 1147
>gi|342879891|gb|EGU81124.1| hypothetical protein FOXB_08398 [Fusarium oxysporum Fo5176]
Length = 1150
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 132/475 (27%), Positives = 192/475 (40%), Gaps = 121/475 (25%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP-------------------- 74
QAIG N R+DTLL L YPQRP+ +G
Sbjct: 695 QAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDI 754
Query: 75 EDSLVMNQASLE-----CGVFRSESYKAEV---------------DNKDIQVKSRPS--- 111
ED+LV+N+AS++ C VFR Y E+ + D ++K R +
Sbjct: 755 EDALVLNKASIDRGFGRCQVFRK--YTTELQKYPNGRRERIGDPENEGDGKIKRRIAKHE 812
Query: 112 ---DDMLNFGKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLK 153
DD L + SG+ ++ K + D S+ + + + K
Sbjct: 813 ALDDDGLAIVGYKVNSGEAMVKKETPLDQTSTGIGLDRGPAEFRDSSVSYRIADPAYIDK 872
Query: 154 VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ----------- 201
V++S + V RQ+ LGDKFSS HGQKGV+G + EQ
Sbjct: 873 VMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLS 928
Query: 202 --------------TPAQLLEAALGKGA-CDGLMSYATPFATSTGGVITEQHQSFVSQLL 246
T +LLE GK + G Y G +SQ+L
Sbjct: 929 PDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRPDYGF------GDAFRSHPLEEMSQVL 982
Query: 247 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 306
+ G ++ K YF + P++ + +F +YQ+ HM +DK+
Sbjct: 983 -----VDHGFSWEGKDYFTSGITGEPLE---------AYVFNGPIYYQRLKHMVQDKMHS 1028
Query: 307 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ---- 362
R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + I
Sbjct: 1029 RSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEIDICQQ 1088
Query: 363 -RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQLSGVSM 414
+ G YC C S ++ K +PY AKLL QEL S ++G+ L+ D + S+
Sbjct: 1089 CGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQMDDEFPHPSI 1143
>gi|435845618|ref|YP_007307868.1| DNA-directed RNA polymerase, subunit B' [Natronococcus occultus
SP4]
gi|242392384|dbj|BAH80405.1| RNA polymerase subunit B' [Natronococcus occultus SP4]
gi|433671886|gb|AGB36078.1| DNA-directed RNA polymerase, subunit B' [Natronococcus occultus
SP4]
Length = 609
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 130/495 (26%), Positives = 207/495 (41%), Gaps = 111/495 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDEDGLVNPETKVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L P + + +G L+ +A P + G ++
Sbjct: 363 ELGDKFASRHGQKGVVGHL--APQEDM-PFTEEGVVPDLVLNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFIFKHY--FLFCLFECPMDWIAFICL--------VRSLIFT 288
+ +L G R G F+ + L E D + + + IF
Sbjct: 416 EMIGGKLGAMEGRRVDGTPFLGEDESELREGLEEAGFDSAGKETMYSGITGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL +C V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|289581816|ref|YP_003480282.1| DNA-directed RNA polymerase subunit B [Natrialba magadii ATCC
43099]
gi|289531369|gb|ADD05720.1| DNA-directed RNA polymerase subunit B [Natrialba magadii ATCC
43099]
Length = 609
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 196/478 (41%), Gaps = 108/478 (22%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP Q++G P+ N IR DT L YPQ + ++ +G
Sbjct: 141 GMIPYPEHNASPRITMGAGMIKQSLGLPSANYRIRPDTRQHLLHYPQLSMVKTQTTEQIG 200
Query: 73 ---RP-----------------EDSLVMNQASLECGVFRSESYKA--------------- 97
RP ED+LVMN+AS+E + RS ++
Sbjct: 201 YDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDR 260
Query: 98 -EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA---------EIGA---- 137
E+ ++D+ + + +D L + + +++GK + ++G
Sbjct: 261 FEIPSQDVRGARGEEAYAHLDEDGLVNPETEVDENSVLLGKTSPPRFLEEPDDMGGLSPQ 320
Query: 138 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
+ S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKG
Sbjct: 321 KRRETSVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKG 376
Query: 195 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
VLG L P + + D +++ +A P + G ++ + +L G R
Sbjct: 377 VLGHL--APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRV 430
Query: 254 SGITFIFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDK 303
G F+ + L E D + + + IF I FYQ+ HM +K
Sbjct: 431 DGTPFLGEDESALRDGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNK 490
Query: 304 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------- 352
+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL
Sbjct: 491 LHARSRGPVQVLTRQPTEGRAREGGLRIGEMESDVFIGHGAAMTLKERLLDESDREFINV 550
Query: 353 --KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
+C V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 551 CGQCGMSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
Length = 1152
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 193/489 (39%), Gaps = 117/489 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL + YPQRPL
Sbjct: 688 LLGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQLARIDTLLYLMVYPQRPLV 744
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES--YK 96
+ + ED+L++N+AS++ C VFR S K
Sbjct: 745 TTKTIELVKYDQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRKYSTYIK 804
Query: 97 AEVDNKDIQVKSRPSDDMLNFGKIQS------------KSGDIVIGKYAEIGA------- 137
+N ++ P D K + K GDI + K A
Sbjct: 805 QYPNNTHDRLADPPPPDSDRHRKYKVDADGLPAVGDRVKEGDIYVNKQTPSNATDNSSTA 864
Query: 138 --------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
D + + G + KV+LS ++G + +RQ+ LGDKFSS
Sbjct: 865 SSMPSHWRDAVMTYRANMNGHIDKVMLSDMENGTQLVKILMRQT----RRPELGDKFSSR 920
Query: 190 HGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSY 222
HGQKGV G + T ++LE GK G G Y
Sbjct: 921 HGQKGVCGLIVPQEDMPFTDQGICPDIIMNPHGFPSRMTVGKMLELLSGKAGILGGKFEY 980
Query: 223 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 282
T F GG E + Q +G ++ K Y + ++
Sbjct: 981 GTAF----GGSKAEDMSRALIQ---------AGYSYAGKDYLTSGITGQALE-------- 1019
Query: 283 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAH 342
S +F FYQ+ HM DK+ R+ G LT +P R R GG+ GEM+ DCLIAH
Sbjct: 1020 -SYVFFGPIFYQKLKHMVIDKMHARSRGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAH 1078
Query: 343 GASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELS 396
GAS L ERL + A +V Q +G +C C S D ++K +PY +KLL QEL
Sbjct: 1079 GASHLLLERLMLSSDAFEVDVCQSCGFMGYNGWCAHCKSGDKVVKLMLPYASKLLFQEL- 1137
Query: 397 FSMGITLKF 405
+M I +
Sbjct: 1138 LAMNIAPRL 1146
>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
MK1]
gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
MK1]
Length = 1124
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 134/491 (27%), Positives = 196/491 (39%), Gaps = 132/491 (26%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N IR DT L YPQ+P+
Sbjct: 643 VLGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQIRTDTRAHLLHYPQKPIV 699
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAEVD 100
+ +G RP ED+++MN++S++ G+FRS Y AE
Sbjct: 700 QTRALEAIGYTERPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAE-- 757
Query: 101 NKDIQVKSRPSDDML--------NFGK---------------IQSKSGDIVIGK------ 131
+I+ D +L GK ++ K GD++IGK
Sbjct: 758 --EIKYPGGQEDQILLPEAGVRGYKGKEYYRLLESNGIVSPEVEVKGGDVLIGKVSPPRF 815
Query: 132 ---YAEIGADH-----SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
+ E+ D SI +H ERG V VL++ DG V +R + +G
Sbjct: 816 LQEFKELSPDQSKRDTSIITRHGERGTVDLVLVTETSDGNKLVKVRVRD----LRIPEIG 871
Query: 184 DKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKG-AC 216
DKF++ HGQKGV+G L T Q++EA GK A
Sbjct: 872 DKFATRHGQKGVIGMLIPQVDMPYTVRGLVPDIILNPHALPSRMTVGQIMEAIAGKYVAA 931
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G ATPF + E+ Q +S+L G + G ++
Sbjct: 932 SGHPIDATPFYN----LPIEEIQKKLSEL----GYLSDGTEVVYDGRTGEK--------- 974
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
++S I I +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 975 -----IKSRILFGIVYYQKLHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMER 1029
Query: 337 DCLIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANV 384
DCLI +GA+ + +RL + V+ R C I + +
Sbjct: 1030 DCLIGYGAAMLIKDRLLDNSDRAVVYVCDQCGYVGWYDRAKNKYVCPIHGDKTTLSPVTI 1089
Query: 385 PYGAKLLSQEL 395
Y KLL QEL
Sbjct: 1090 SYAFKLLLQEL 1100
>gi|448396746|ref|ZP_21569194.1| DNA-directed RNA polymerase subunit B' [Haloterrigena limicola JCM
13563]
gi|242392340|dbj|BAH80383.1| RNA polymerase subunit B' [Haloterrigena limicola JCM 13563]
gi|445673275|gb|ELZ25836.1| DNA-directed RNA polymerase subunit B' [Haloterrigena limicola JCM
13563]
Length = 609
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 130/495 (26%), Positives = 204/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETKVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFT 288
+ +L G R G F+ K L + D + + + IF
Sbjct: 416 EMIGGKLGAMEGRRVDGTPFLGEDKDELREGLEDAGFDSAGKETMYSGVTGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHICANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
Length = 1175
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 203/493 (41%), Gaps = 111/493 (22%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVIGKTITLPENE 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGLMS------YATPFATSTGGVIT 235
KF+S HGQKG G E P C+GL +A P + G +I
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPF----------TCEGLTPDIIINPHAIPSRMTIGHLI- 983
Query: 236 EQHQSFVSQLLNCIGARN--------SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
E Q VS IG I+ + + Y M + + IF
Sbjct: 984 ECIQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIF 1043
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+HGA+
Sbjct: 1044 LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 1103
Query: 348 LHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C +AN+ C+ C + I + +PY AKLL
Sbjct: 1104 LRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQVRLPYAAKLLF 1160
Query: 393 QELSFSMGITLKF 405
QEL SM I +
Sbjct: 1161 QEL-MSMNIAPRL 1172
>gi|380493500|emb|CCF33834.1| DNA-directed RNA polymerase III subunit RPC2 [Colletotrichum
higginsianum]
Length = 1151
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 139/499 (27%), Positives = 199/499 (39%), Gaps = 124/499 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 680 VLGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 736
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
I++S ED+LV+N+AS + C VFR Y AE
Sbjct: 737 ISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YTAE 794
Query: 99 V-----------------DNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA---- 137
+ +N DD L + SG+++I K +
Sbjct: 795 LQKYPNGRRERIGDPVNDENGRTTKHEALDDDGLAIVGYKVNSGEVMIKKETPLDTGSTG 854
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
D SI + + + KV++S + V RQ+ LGDKF
Sbjct: 855 IGMDRGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQT----RRPELGDKF 910
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC-DGL 219
SS HGQKGV+G + T +LLE GK + DG
Sbjct: 911 SSRHGQKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGR 970
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIA 277
Y F +F S L + A + G ++ K YF + P++
Sbjct: 971 KDYG--FG-----------DAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLE--- 1014
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ D
Sbjct: 1015 ------AYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERD 1068
Query: 338 CLIAHGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLL 391
CLIA+GAS L ERL + I + G YC C S ++ + +PY AKLL
Sbjct: 1069 CLIAYGASQLLLERLMISSDGTQIDICQQCGLFGYKGYCHTCKSTREVTQMTMPYAAKLL 1128
Query: 392 SQEL-SFSMGITLKFDTQL 409
QEL S ++G+ L+ + +
Sbjct: 1129 VQELISMNVGVRLQLEDEF 1147
>gi|303388613|ref|XP_003072540.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
ATCC 50506]
gi|303301681|gb|ADM11180.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
ATCC 50506]
Length = 1047
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 200/466 (42%), Gaps = 94/466 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G+ P + + +YQ Q + QA+GF N R+D + + Y Q P
Sbjct: 614 SNILGIIAGLTPYSEHNQSPRN--MYQCQM-AKQAMGFSAYNMKTRIDHTMYNINYLQSP 670
Query: 62 LF----WILISD------CL--------GRPEDSLVMNQASLECGVFRSESYKAE--VDN 101
L + ++ D C+ ED+LV+N++S+E G+F YK E V N
Sbjct: 671 LVRTKGYDMVKDYPLGINCMVAVLSYTAYDMEDALVINKSSIERGLFTGLIYKTERIVLN 730
Query: 102 KDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI-GADHSIKLKHTERGLVLKVLLSSND 160
K PS KIQ D ++ KY ++ ++ + TE G++ V + +D
Sbjct: 731 KGYSFLYLPSVG----EKIQK---DSILYKYVDLEDREYQTRYLETEDGVIDSVRVFESD 783
Query: 161 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ---------- 201
G+ A+++IR MV + +GDKFSS HGQKGV + F E
Sbjct: 784 AGERCALLTIR----MVRNPTIGDKFSSRHGQKGVCSVHWPSIDMPFTESGYVPDIIINP 839
Query: 202 -------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
T L+E+ GK C G T F + E+ +G +
Sbjct: 840 HAFPSRMTIGMLMESIAGKVGCLSGNTQDGTAFEKNLSQGEDEE----------TVGRKE 889
Query: 254 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 313
+ + K+ F + E PM R +F + +YQ+ HM DK + R G+
Sbjct: 890 YICSELQKYGFNYYGNE-PMYSGVSGNEFRVDVFVGVVYYQRLKHMVGDKFQVRTKGAIV 948
Query: 314 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER-LKCKNVANVIQRVVGGPYCRI 372
T +PV RKR GGI FGEM+ D LI+HGAS L +R LKC + YC
Sbjct: 949 STTRQPVGGRKRQGGIRFGEMERDTLISHGASHLLQDRLLKCSDGTTF-------EYCGA 1001
Query: 373 CNS------------ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C S + DI +PY K L EL +M I +K D
Sbjct: 1002 CKSILFTSSGDCICGSSDIRIVEMPYVFKYLCYEL-LAMNIRVKLD 1046
>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Megachile rotundata]
Length = 1175
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEAD 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|116753353|ref|YP_842471.1| DNA-directed RNA polymerase subunit B' [Methanosaeta thermophila
PT]
gi|116664804|gb|ABK13831.1| DNA-directed RNA polymerase, subunit B' [Methanosaeta thermophila
PT]
Length = 604
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 132/499 (26%), Positives = 214/499 (42%), Gaps = 124/499 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTL 51
S +LG+ ++P Y SP Q +GFP N +R DT
Sbjct: 129 SLILGICTALVP-------------YPEHNASPRNTMGAGMIKQCLGFPMANIRLRPDTR 175
Query: 52 LQQLFYPQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFR 91
L YPQ+P+ + +G RP ED+LVMN++++E G+ R
Sbjct: 176 GHYLHYPQQPIVSTRTAKAIGFDKRPAGQNFVVAVLAYEGYNIEDALVMNKSAVERGLAR 235
Query: 92 SESYK-AEVDNK-------------DIQVK-SRPSDDMLNFGKIQSKS----------GD 126
S ++ +E + + D++V+ +R S+ +G++ + D
Sbjct: 236 SHFFRVSEAEERKYPGGQEDKFEIPDLEVRGARGSE---TYGQLDADGLVNPNADVGPND 292
Query: 127 IVIGKYA---------EIG------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 171
++IGK + E G + S+ ++ E+G+V V+L+ + +G A V R
Sbjct: 293 VLIGKTSPPRFLEEPTEFGISPQQRRETSVTMRSNEKGVVDLVILTESQNGNRLAKVKTR 352
Query: 172 QSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATST 230
LGDKF+S HGQKGV+G L P + + + D L++ +A P +
Sbjct: 353 DQ----RIPELGDKFASRHGQKGVVGLL--LPQEDMPFSESGMVPDLLLNPHAIPSRMTV 406
Query: 231 GGV---ITEQHQSFVSQLLNC---IGARN----SGITFI-FKHYFLFCLFECPMDWIAFI 279
G V I + S + ++ +G + S +T + F H L++ A
Sbjct: 407 GHVLEMIGGKVGSLEGRFIDATAFLGEKEWDLRSALTRLGFAHTGKEVLYDG-----ATG 461
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+++ IF + YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D L
Sbjct: 462 ERIQADIFVGVILYQKLYHMVTGKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVL 521
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPY 386
IAHGA+ L ERL KC +A + R C +C + DI + Y
Sbjct: 522 IAHGAALALKERLVEESDKVTELVCSKCGVIA-IHDRRRNMDLCPVCGTDTDIYPVEMSY 580
Query: 387 GAKLLSQELSFSMGITLKF 405
KLL E+ S+G+ +
Sbjct: 581 AFKLLLDEIK-SLGVAPRL 598
>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
Length = 1175
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 202/493 (40%), Gaps = 111/493 (22%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYK-A 97
L + L EDS++MN +++E G FRS SYK A
Sbjct: 759 LVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 818
Query: 98 EVDNKDIQVK--SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
E Q + +PS DD + I+ D+VIGK +
Sbjct: 819 ESKGMGDQEEQFEKPSRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGLMS------YATPFATSTGGVIT 235
KF+S HGQKG G E P C+GL +A P + G +I
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPF----------TCEGLTPDIIINPHAIPSRMTIGHLI- 983
Query: 236 EQHQSFVSQLLNCIGARN--------SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
E Q VS IG I+ + + Y M + + IF
Sbjct: 984 ECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIF 1043
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+
Sbjct: 1044 LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQF 1103
Query: 348 LHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C +AN+ C+ C + I + +PY AKLL
Sbjct: 1104 LRERLFEVSDPYRVHVCNFCGIIAIANLRNNTFE---CKGCKNKTQISQIRLPYAAKLLF 1160
Query: 393 QELSFSMGITLKF 405
QEL SM I +
Sbjct: 1161 QEL-MSMNIAPRL 1172
>gi|402076059|gb|EJT71482.1| hypothetical protein GGTG_10739 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1158
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 208/488 (42%), Gaps = 100/488 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 685 ILGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 741
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS++ C VFR + + +
Sbjct: 742 ISKTIELIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKHTAELQ 801
Query: 99 V--DNKDIQVKSRPSDDMLNFGKIQSK-----------------SGDIVIGKYAEIGA-- 137
+N+ ++ RP D G+ K +G+++I K I
Sbjct: 802 TYANNRSEEI-GRPEIDEAT-GRHTDKNVAIDGDGLATVGYRIHAGEVMIKKLTPIDQGS 859
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D SI + + + KV++S + V RQ+ LGD
Sbjct: 860 TGIGNDVGSNDYRDTSISYRTPDPSYIDKVMVSQTEKEHILVKVQTRQT----RRPELGD 915
Query: 185 KFSSMHGQKGVLGFL---EQTPAQ----LLEAALGKGACDGLMSYATPFATSTG--GVIT 235
KFSS HGQKGV+G + E P Q + + + M+ F TG V+
Sbjct: 916 KFSSRHGQKGVVGIIVDQEDMPFQDSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASVVE 975
Query: 236 EQHQ-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
+ + +F + + +G G ++ K YF + P++ + IF
Sbjct: 976 GEKRYGYGDAFRTHPVEEMGEALVRHGFSWEGKDYFTSGITGEPLE---------AYIFN 1026
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1027 GPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLL 1086
Query: 349 HERLKCKNVANVI---QR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGI 401
ERL + A I QR + G YC+ C S ++ +PY AKLL QEL S ++G+
Sbjct: 1087 LERLMLSSDATSIDICQRCGLFGYKGYCQTCKSTREVTAMTMPYAAKLLVQELISMNVGV 1146
Query: 402 TLKFDTQL 409
L+ + +
Sbjct: 1147 RLQLEDEF 1154
>gi|242392296|dbj|BAH80341.1| RNA polymerase subunit B' [Halobiforma haloterrestris]
Length = 609
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 127/494 (25%), Positives = 207/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETTVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L P + + D +++ +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHL--APQEDMPFTEDGVVPDLVLNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L + G R G F+ + FE + + + + IF
Sbjct: 417 MIGGKLGSLEGRRVDGTPFLGEDESELREGLEEAGFESSGKETMYSGITGEKIEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 VIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREYIPICGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 594 MK-ALGIAPRLELE 606
>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
Length = 1175
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETD 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|322710723|gb|EFZ02297.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 1157
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 133/500 (26%), Positives = 205/500 (41%), Gaps = 122/500 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 LLGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS++ C VFR + + +
Sbjct: 739 ITKTIQLVHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 798
Query: 99 --------------------VDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG-- 136
++++ ++ D + G + KSG++++ K +
Sbjct: 799 KYPNGRRERIGDPVNQVNGGTTRREVKYEALDDDGLATVG-YRVKSGEVMVKKETPLDLT 857
Query: 137 -------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D +I + + + KV++S + V RQ+ LG
Sbjct: 858 TTGIGLDRGPSEYRDSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELG 913
Query: 184 DKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC- 216
DKFSS HGQKGV+G + T +LLE GK +
Sbjct: 914 DKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSRMTVGKLLECLTGKASII 973
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
DG Y G +SQ+L + G ++ K YF L P++
Sbjct: 974 DGRPDYGF------GDAFRSHPVKDMSQVL-----LDYGFSWEGKDYFTSGLTGEPLE-- 1020
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ IF +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+
Sbjct: 1021 -------AYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMER 1073
Query: 337 DCLIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKL 390
DCLIA+GAS L ERL + ++ Q+ + G YC C S + + +PY AKL
Sbjct: 1074 DCLIAYGASQLLLERLMLSSDGVTLDICQQCGLFGYKGYCNTCKSTRQVTQMQMPYAAKL 1133
Query: 391 LSQEL-SFSMGITLKFDTQL 409
L QEL S ++G+ L+ + +
Sbjct: 1134 LVQELISMNVGVRLQLEDEF 1153
>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
Length = 1174
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 131/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 817
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 818 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNE 877
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1093 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1149
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1150 RLPYAAKLLFQEL 1162
>gi|448711918|ref|ZP_21701461.1| DNA-directed RNA polymerase subunit B' [Halobiforma nitratireducens
JCM 10879]
gi|242392300|dbj|BAH80343.1| RNA polymerase subunit B' [Halobiforma nitratireducens]
gi|445791003|gb|EMA41652.1| DNA-directed RNA polymerase subunit B' [Halobiforma nitratireducens
JCM 10879]
Length = 609
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 205/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETTVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L Q E + L +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L + G R G F+ + FE + + + + IF+
Sbjct: 417 MIGGKLGSLEGRRVDGTPFLGEDEEDLRKGLEEAGFEPSGKETMYSGITGEKIEAEIFSG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 VIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREYIPICGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 594 MK-ALGIAPRLELE 606
>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
Length = 1150
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 131/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 734 LVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 794 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNE 853
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 854 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 910 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISALLQEYGYQLRGNEVMYNGHTGRK---------- 1012
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1013 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRSRDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1126 RLPYAAKLLFQEL 1138
>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
Length = 1123
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 135/505 (26%), Positives = 206/505 (40%), Gaps = 131/505 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 650 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 706
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA--EV 99
L + L EDS+++N +++E G FRS Y++ E
Sbjct: 707 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEA 766
Query: 100 DNKDI----QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++K I + +PS DD + I+ D++IGK +
Sbjct: 767 ESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETD 826
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 827 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 882
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 883 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 942
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 943 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 985
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 986 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1041
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1042 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1098
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY AKLL QEL +M I + T
Sbjct: 1099 RLPYAAKLLFQEL-MAMNIAPRLMT 1122
>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
Length = 1175
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 131/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNE 878
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
Length = 1176
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDA 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|383620454|ref|ZP_09946860.1| DNA-directed RNA polymerase subunit B' [Halobiforma lacisalsi AJ5]
gi|448697815|ref|ZP_21698693.1| DNA-directed RNA polymerase subunit B' [Halobiforma lacisalsi AJ5]
gi|242392298|dbj|BAH80342.1| RNA polymerase subunit B' [Halobiforma lacisalsi]
gi|445781181|gb|EMA32042.1| DNA-directed RNA polymerase subunit B' [Halobiforma lacisalsi AJ5]
Length = 609
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 127/494 (25%), Positives = 207/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETTVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L P + + D +++ +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHL--APQEDMPFTEDGVVPDLVLNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L + G R G F+ + FE + + + + IF
Sbjct: 417 MIGGKLGSLEGRRVDGTPFLGEDESELREGLEEAGFESSGKETMYSGITGEKIEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 VIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREYIPICAQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 594 MK-ALGIAPRLELE 606
>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
Length = 1176
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL LFYP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLFYPHKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSCFYRSYKDS 819
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 820 ESKRIGDQEEQFEKPTRQTCQGMRNAMYDKLDDDGIITPGVRVSGDDVVIGKTITLPDTD 879
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G V +V+L+ N +G F + +R V +GD
Sbjct: 880 DDLEGTTRRFTKRDASTFLRNSETGCVDQVMLTLNAEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNELMYNGHTGR----------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
Length = 1176
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDA 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|386001092|ref|YP_005919391.1| DNA-directed RNA polymerase subunit B' [Methanosaeta harundinacea
6Ac]
gi|312183601|gb|ADQ42370.1| DNA-directed RNA polymerase subunit B' [Methanosaeta harundinacea
6Ac]
gi|357209148|gb|AET63768.1| DNA-directed RNA polymerase subunit B' [Methanosaeta harundinacea
6Ac]
Length = 607
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 200/503 (39%), Gaps = 132/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTL 51
S +LG+ G++P Y SP Q +G P N +R DT
Sbjct: 132 SLVLGICTGLVP-------------YPEHNASPRNTMGAGMIKQCLGTPLANTKLRPDTR 178
Query: 52 LQQLFYPQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFR 91
L YPQR L +D +G RP ED+L++N+ S+E G+ R
Sbjct: 179 GHYLHYPQRALCRSRTADAVGFDERPAGQNFVVAVLVYEGYNIEDALILNRGSIERGLGR 238
Query: 92 SESYK-AEVDNK-------------DIQVK--------SRPSDDMLNFGKIQSKSGDIVI 129
S ++ +E + + D++V+ S+ DD L D++I
Sbjct: 239 SHFFRVSEAEERKYPGGQEDKFEIPDMEVRGARGTEAYSQLDDDGLVNPNAVVAPNDVLI 298
Query: 130 GKYA---------EIG------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 174
GK + E G + S+ ++ E+G+V V+L+ + +G A V R
Sbjct: 299 GKTSPPRFLEEPTEFGITPQQRRETSVTMRSNEKGVVDTVILTESSNGNRLAKVKTRDQ- 357
Query: 175 NMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVI 234
LGDKF+S HGQKGV+G + PA + G+ + +A P + G
Sbjct: 358 ---RVPELGDKFASRHGQKGVIGLI-VPPADMPFTEAGQVPDLIVNPHAIPSRMTVG--- 410
Query: 235 TEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC-------------- 280
+L IG + + F F L E D A +
Sbjct: 411 ---------HVLEMIGGKMGSLEGRFVDATAF-LGEEETDMRAALTKFGFSHTGREVMYN 460
Query: 281 -----LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ + +F + YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+
Sbjct: 461 GINGEQIMADVFVGVILYQKLYHMVAGKMHARSRGPVQVLTRQPTEGRAREGGLRFGEME 520
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKA 382
D LIAHGA+ L ERL +C +A + + YC +C S +I
Sbjct: 521 RDVLIAHGAALALKERLVDESDKVTELVCSRCGMIA-IHDKRRNVDYCSVCGSDTEIYPV 579
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+ Y KLL E+ S+G+ +
Sbjct: 580 EMSYAFKLLLDEIK-SLGVAPRL 601
>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
Length = 1176
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDA 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|448354756|ref|ZP_21543511.1| DNA-directed RNA polymerase subunit B' [Natrialba hulunbeirensis
JCM 10989]
gi|242392362|dbj|BAH80394.1| RNA polymerase subunit B' [Natrialba hulunbeirensis]
gi|445637087|gb|ELY90243.1| DNA-directed RNA polymerase subunit B' [Natrialba hulunbeirensis
JCM 10989]
Length = 609
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 196/478 (41%), Gaps = 108/478 (22%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP Q++G P+ N IR DT L YPQ + ++ +G
Sbjct: 141 GMIPYPEHNASPRITMGAGMIKQSLGLPSANYRIRPDTRQHLLHYPQLSMVKTQTTEQIG 200
Query: 73 ---RP-----------------EDSLVMNQASLECGVFRSESYKA--------------- 97
RP ED+LVMN+AS+E + RS ++
Sbjct: 201 YDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDR 260
Query: 98 -EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA---------EIGA---- 137
E+ ++D+ + + +D L + + +++GK + ++G
Sbjct: 261 FEIPSQDVRGARGEEAYAHLDEDGLVNPETEVDENSVLLGKTSPPRFLEEPDDMGGLSPQ 320
Query: 138 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
+ S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKG
Sbjct: 321 KRRETSVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKG 376
Query: 195 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
VLG L P + + D +++ +A P + G ++ + +L G R
Sbjct: 377 VLGHL--APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRV 430
Query: 254 SGITFIFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDK 303
G F+ + L E D + + + IF I FYQ+ HM +K
Sbjct: 431 DGTPFLGEDESALREGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNK 490
Query: 304 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------- 352
+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL
Sbjct: 491 LHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINV 550
Query: 353 --KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
+C V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 551 CGQCGMSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|448282779|ref|ZP_21474061.1| DNA-directed RNA polymerase subunit B' [Natrialba magadii ATCC
43099]
gi|242392364|dbj|BAH80395.1| RNA polymerase subunit B' [Natrialba magadii]
gi|445575394|gb|ELY29869.1| DNA-directed RNA polymerase subunit B' [Natrialba magadii ATCC
43099]
Length = 609
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 196/478 (41%), Gaps = 108/478 (22%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP Q++G P+ N IR DT L YPQ + ++ +G
Sbjct: 141 GMIPYPEHNASPRITMGAGMIKQSLGLPSANYRIRPDTRQHLLHYPQLSMVKTQTTEQIG 200
Query: 73 ---RP-----------------EDSLVMNQASLECGVFRSESYKA--------------- 97
RP ED+LVMN+AS+E + RS ++
Sbjct: 201 YDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDR 260
Query: 98 -EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA---------EIGA---- 137
E+ ++D+ + + +D L + + +++GK + ++G
Sbjct: 261 FEIPSQDVRGARGEEAYAHLDEDGLVNPETEVDENSVLLGKTSPPRFLEEPDDMGGLSPQ 320
Query: 138 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
+ S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKG
Sbjct: 321 KRRETSVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKG 376
Query: 195 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
VLG L P + + D +++ +A P + G ++ + +L G R
Sbjct: 377 VLGHL--APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRV 430
Query: 254 SGITFIFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDK 303
G F+ + L E D + + + IF I FYQ+ HM +K
Sbjct: 431 DGTPFLGEDESALRDGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNK 490
Query: 304 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------- 352
+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL
Sbjct: 491 LHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINV 550
Query: 353 --KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
+C V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 551 CGQCGMSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
Length = 1118
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/449 (27%), Positives = 194/449 (43%), Gaps = 103/449 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGFEERPAGQNFVVAVLSYQGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED++V+N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIVINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPDPTVRGYRGEKYYRHLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYAE---------IGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + D+++G+ + +G + SI ++ +E+G+V KV++
Sbjct: 792 DGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSIAVRPSEKGVVDKVII 851
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 852 TETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVP 905
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 906 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRIDGTAFIGEPEEKLRKELEELGF 961
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 KHSGREIMY----DGITGRRL-EADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT 1016
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R G
Sbjct: 1017 EGRAREGGLRFGEMERDVLIGHGAAMLLVERLLEESDKTEVWVCETCGHLALEDKR-RGQ 1075
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL EL
Sbjct: 1076 VYCPVCGETEKISKVEMSYAFKLLLDELK 1104
>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
GS115]
gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
GS115]
gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
7435]
Length = 1158
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 138/496 (27%), Positives = 204/496 (41%), Gaps = 123/496 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + K + AIG+ N R+DTLL + YPQ+P+
Sbjct: 688 VLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFN---RIDTLLYLMVYPQQPMV 744
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESY--- 95
+ +G ED+LV+N+AS++ C VFR +
Sbjct: 745 KTKTIELIGYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLK 804
Query: 96 KAEVDNKDI--------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI 141
+ KDI Q +S D + G + +SG + + K+ I ++ SI
Sbjct: 805 RYPNHTKDILGGMSVNDQGEPIFQHRSLGPDGLGEVG-LPLESGQVYVNKFVPINSEESI 863
Query: 142 ----------KLKHTERGLVLKVLLSSNDD------GKNFAVVSIRQSVNMVHSACLGDK 185
K +H E +V + S D G+N V+ ++ + LGDK
Sbjct: 864 IGQTPDDSQRKEQHRETPMVYRGPEPSYIDQMMMSLGENDQVL-VKALLRQTRRPELGDK 922
Query: 186 FSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDG 218
FSS HGQKGV G + Q T +++E GK G DG
Sbjct: 923 FSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLDG 982
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFECPMDWI 276
+ Y T F G + E Q + + + G SGIT EC
Sbjct: 983 SLQYGTCFG---GSDLKEMSQILIDKGFSYSGKDQLYSGITG-----------EC----- 1023
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+++ IF +YQ+ HM DK+ R+ G LT +P R R GG+ GEM+
Sbjct: 1024 -----LQAYIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMER 1078
Query: 337 DCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKL 390
DC++A+GAS L ERL +V N + +C C S++ IIK +PY AKL
Sbjct: 1079 DCVVAYGASQLLLERLMISSDAFEVDVCNTCGLMGYNGWCPTCKSSEFIIKMTIPYAAKL 1138
Query: 391 LSQELSFSMGITLKFD 406
L QEL SM I + +
Sbjct: 1139 LFQEL-VSMNIAPRLE 1153
>gi|448356451|ref|ZP_21545184.1| DNA-directed RNA polymerase subunit B' [Natrialba chahannaoensis
JCM 10990]
gi|242392360|dbj|BAH80393.1| RNA polymerase subunit B' [Natrialba chahannaoensis]
gi|445653484|gb|ELZ06355.1| DNA-directed RNA polymerase subunit B' [Natrialba chahannaoensis
JCM 10990]
Length = 609
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 196/478 (41%), Gaps = 108/478 (22%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP Q++G P+ N IR DT L YPQ + ++ +G
Sbjct: 141 GMIPYPEHNASPRITMGAGMIKQSLGLPSANYRIRPDTRQHLLHYPQLSMVKTQTTEQIG 200
Query: 73 ---RP-----------------EDSLVMNQASLECGVFRSESYKA--------------- 97
RP ED+LVMN+AS+E + RS ++
Sbjct: 201 YDDRPAAQNFVVAVMSYEGFNIEDALVMNKASIERALARSHFFRTYEGEERRYPGGQEDR 260
Query: 98 -EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA---------EIGA---- 137
E+ ++D+ + + +D L + + +++GK + ++G
Sbjct: 261 FEIPSQDVRGARGEEAYAHLDEDGLVNPETEVDENSVLLGKTSPPRFLEEPDDMGGLSPQ 320
Query: 138 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
+ S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKG
Sbjct: 321 KRRETSVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKG 376
Query: 195 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
VLG L P + + D +++ +A P + G ++ + +L G R
Sbjct: 377 VLGHL--APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRV 430
Query: 254 SGITFIFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDK 303
G F+ + L E D + + + IF I FYQ+ HM +K
Sbjct: 431 DGTPFLGEDESALRDGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNK 490
Query: 304 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------- 352
+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL
Sbjct: 491 LHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINV 550
Query: 353 --KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
+C V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 551 CGQCGMSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Apis florea]
Length = 1175
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEAD 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Apis mellifera]
Length = 1154
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 681 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 737
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 738 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 797
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 798 ESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEAD 857
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 858 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 913
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 914 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 973
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 974 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1016
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1017 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1072
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1073 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1129
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1130 RLPYAAKLLFQEL 1142
>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
Length = 1149
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 198/486 (40%), Gaps = 134/486 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 689 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIN 748
Query: 73 RP--------------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRP-- 110
ED+LV+N++SL+ G R + V +Q+K P
Sbjct: 749 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQV----VRKNTVQLKKYPNH 804
Query: 111 SDDMLN---------------------FGKIQSK---------------SGDIVIGKYAE 134
S D+L+ G++ SK SGD +G+ +
Sbjct: 805 SKDILSGMRVDENDEPIFPHQALGPDGLGEVGSKIENGQVFANKCVPTNSGDSSLGQPQQ 864
Query: 135 IGADHSIKL--KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+ + L K E V +V++S +D+ + V +RQ+ LGDKFSS HGQ
Sbjct: 865 VESHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQ 920
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV G + Q T +++E GK G +G + Y T
Sbjct: 921 KGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTC 980
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ +S++L G SG ++ CL ++
Sbjct: 981 F----GGSKLEE----MSKILVEKGFSYSGKDMLYSGITGECL--------------QAY 1018
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1019 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1078
Query: 346 GNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL +V N + +C C S+++IIK +PY AKLL QEL SM
Sbjct: 1079 QLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSSENIIKMTIPYAAKLLFQEL-LSM 1137
Query: 400 GITLKF 405
I +
Sbjct: 1138 NIAPRL 1143
>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
terrestris]
gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
impatiens]
Length = 1175
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEAD 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
Length = 1173
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 700 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 756
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MN +++E G FRS +++ D
Sbjct: 757 LVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDA 816
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 817 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNE 876
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 877 DELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 933 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 993 GEIGDATPFNDAV-------NVQKISSLLQEYGYQLRGNEVMYNGHTGRK---------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1092 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1148
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1149 RLPYAAKLLFQEL 1161
>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
5473]
gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
5473]
Length = 1118
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 193/449 (42%), Gaps = 103/449 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I + +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLMHYPQIPLVNSRIMEAVGFEQRPAGQNFVVAVLSYGGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED+++MN+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAVIMNKASIERGLARSTFFRTYEAEEKKYMGGQTDKFEIPDPTVRGFLGEKYYRHLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGK---------YAEIGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + + D+++ + A +GA + SI ++ E+G+V KV+L
Sbjct: 792 DGIIFPESKVEGKDVLVARTSPPRFLEEQAGLGAGILQGRRETSITMRPGEKGIVDKVIL 851
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + GDKF+S HGQKGV+G + P + +
Sbjct: 852 TETGDGTKLVKVTVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVP 905
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 906 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRIDGTAFIGEPEEKLRKELEELGF 961
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
+H ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 RHNGREVMY----DGITGRKL-EADIFVGVIYYQRLHHMVADKLHARSRGPVQVLTKQPT 1016
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGAS L ERL C ++A V +
Sbjct: 1017 EGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDKTEVWVCESCGHLA-VEDKRRDK 1075
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELS 396
YC +C + I K + Y KLL E+
Sbjct: 1076 VYCPVCGEEEKISKVEISYAFKLLLDEIK 1104
>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
Length = 1175
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 205/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVIGKTIMLPENE 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLKNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL +M I +
Sbjct: 1151 RLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6) [Pyrococcus
abyssi GE5]
gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi GE5]
Length = 1117
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 193/447 (43%), Gaps = 100/447 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED++++N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYAE--------IGA-------DHSIKLKHTERGLVLKVLLS 157
D L F + + + D++IG+ + +GA + S+ ++ +ERG+V KV+++
Sbjct: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 217
DG V++R + +GDKF+S HGQKGV+G + P + + D
Sbjct: 852 ETGDGTKLVKVTVRD----LRIPEIGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPD 905
Query: 218 GLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FK 261
+++ + P + G ++ ++ ++ G R G FI FK
Sbjct: 906 LIVNPHGIPSRMTVGQLL----EAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFK 961
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
H ++ D I + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 HTGREIMY----DGITGKRF-EADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1016
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGPY 369
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + Y
Sbjct: 1017 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVY 1076
Query: 370 CRICNSADDIIKANVPYGAKLLSQELS 396
C +C + I K + Y KLL EL
Sbjct: 1077 CPVCGEEERISKVEMSYAFKLLLDELK 1103
>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
Length = 1178
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 135/505 (26%), Positives = 205/505 (40%), Gaps = 131/505 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 705 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 761
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA--EV 99
L + L EDS+++N +++E G FRS Y++ E
Sbjct: 762 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKES 821
Query: 100 DNKDI----QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++K I + +PS DD + I+ D++IGK +
Sbjct: 822 ESKKIGDQEEQFEKPSRLTCSGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETD 881
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 882 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 937
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 938 KFASRHGQKGTCGIQYRQEDMPFSSEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 997
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 998 GEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK---------- 1040
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1041 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1096
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1097 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQIAQI 1153
Query: 383 NVPYGAKLLSQELSFSMGITLKFDT 407
+PY AKLL QEL +M I + T
Sbjct: 1154 RLPYAAKLLFQEL-MAMNIAPRLMT 1177
>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 1122
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 194/461 (42%), Gaps = 118/461 (25%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I +G RP
Sbjct: 676 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNM 735
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------------------------------- 98
ED+++MN+AS+E G+ RS +Y+AE
Sbjct: 736 EDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRHLDE 795
Query: 99 ---------VDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTER 148
V+ KD+ V ++ P F + QS G I++ + E S+ ++ +E
Sbjct: 796 DGIIFPESKVNGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SLTVRPSET 847
Query: 149 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLE 208
G+V KV+++ DG V+ R + GDKF+S HGQKGV+G + P + +
Sbjct: 848 GVVDKVIITETGDGTKLVKVTTRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMP 901
Query: 209 AALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------- 259
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 902 WTESGIVPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLR 957
Query: 260 -------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
FKH ++ D I L + +F + +YQ+ HM DK+ R+ G
Sbjct: 958 KELEELGFKHSGREVMY----DGITGRRL-EADVFVGVIYYQRLHHMVADKMHARSRGPV 1012
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI- 361
Q LT +P R R GG+ FGEM+ D LI HGA+ L ERL C+N ++
Sbjct: 1013 QVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1072
Query: 362 -QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
+ G YC +C + I K + Y KLL EL +MGI
Sbjct: 1073 EDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELK-AMGI 1112
>gi|355570728|ref|ZP_09041998.1| DNA-directed RNA polymerase subunit B [Methanolinea tarda NOBI-1]
gi|354826010|gb|EHF10226.1| DNA-directed RNA polymerase subunit B [Methanolinea tarda NOBI-1]
Length = 604
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/453 (27%), Positives = 189/453 (41%), Gaps = 95/453 (20%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
QA+GF N IR DT L Y Q+PL I SD +G RP
Sbjct: 159 QALGFGAANMKIRPDTRGHLLHYVQKPLVHIQTSDLIGSDDRPAGQNFVVAILSFEGYNI 218
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI------------QVKSRPS 111
ED+L+ N+AS++ G+ RS +Y+ E VD +I K+
Sbjct: 219 EDALIFNKASIDRGLGRSHFFRTYEGEERRYPGGQVDRIEIPDEEVTGAHGAESYKNLDD 278
Query: 112 DDMLNFGKIQSKSGDIVIGKYA---------------EIGADHSIKLKHTERGLVLKVLL 156
D ++N + ++ D++IGK + E D S+ ++ ERG+V V++
Sbjct: 279 DGIINPETVVNEK-DVLIGKTSPPRFLEEPTSDLITVEKRRDTSVTMRSNERGIVDTVII 337
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ ++ V R +GDKF+S HGQKGV+G + TP + +
Sbjct: 338 TEGENSSRLIKVKTRDQ----RIPEVGDKFASRHGQKGVIGLI--TPQEDMPFTESGLTP 391
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-----------IFKHYFL 265
D +++ P A + I + ++ G R +G F + K F
Sbjct: 392 DLVIN---PHAIPSRMTIGHMLEMIGGKVGALEGRRVNGTAFSGEREEDLRASLKKQGFA 448
Query: 266 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 325
E D I + I+ + +YQ+ HM K+ R+ G Q LT +P R R
Sbjct: 449 HTGREVMYDGITGKRF-SADIYMGVIYYQKLYHMVSSKMHARSRGPVQVLTRQPTEGRAR 507
Query: 326 FGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRI 372
GG+ FGEM+ D +I HGA+ L ERL +C VA ++ R C
Sbjct: 508 EGGLRFGEMERDVMIGHGAAMALKERLLDESDKVQEYVCARCGMVA-MLDRKSNTTRCLA 566
Query: 373 CNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C + DI + + Y KLL E+ SMGI +
Sbjct: 567 CGAETDIYQVEMSYAFKLLLDEMK-SMGIAPRL 598
>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
Length = 1175
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETD 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDSATKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
Length = 1150
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 677 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 733
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N ++E G FRS Y++ D
Sbjct: 734 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDA 793
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 794 ESKRIGDQEEQFEKPNRSNCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETD 853
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 854 DELEGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 909
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 910 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 970 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1012
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1013 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1068
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1069 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1125
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1126 RLPYAAKLLFQEL-MSMSIAPRL 1147
>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
Length = 1130
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/469 (26%), Positives = 188/469 (40%), Gaps = 125/469 (26%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
Q++G P N +R+D + ++YPQ+PL I D L
Sbjct: 681 QSLGIPHYNFKLRMDPRMHVMYYPQKPLVKTRIFDLLPLDNLPYGTNMVVAVLTGGGYNI 740
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKSR---PS--DDMLNFGKIQSKSGD 126
+D++V+N+A++E G+ RS +Y+AE ++ R PS D+L+ Q+
Sbjct: 741 QDAVVINKAAIERGMSRSVFFRTYEAEERRYPGGLEDRFEKPSLEKDLLDVKPPQAYEAI 800
Query: 127 IVIGKYAEIGA-------------------------------DHSIKLKHTERGLVLKVL 155
+ A + A D S+ L+H E+G++ +V
Sbjct: 801 DPVDGIAYVEAELYGGQAVVSRTSPPRFYTSTLEPRVMTKRKDTSLLLRHGEKGIIDRVF 860
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---------------- 199
+ + G A V +R + LGDKF+S HGQKGV+G L
Sbjct: 861 IMESPGGIKLAKVRVRD----LRPTELGDKFASRHGQKGVVGMLVPQEDMPFTEEGITPD 916
Query: 200 ----------EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNC 248
T QLLEA GK A G AT F + I E +L
Sbjct: 917 LIINPHAIPSRMTVGQLLEAITGKAAALAGRRIDATAFEPPSLDEIRE--------ILRS 968
Query: 249 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
G R+ G ++ D + L + IF + +Y++ H+ DK+ R
Sbjct: 969 YGFRSDGKEVLY-------------DGVTGEKL-EAEIFIGVVYYEKLHHLVADKMHARA 1014
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVA 358
G Q LT +P R R GG+ FGEM+ DCL+ HGAS L ERL C+N
Sbjct: 1015 RGRVQILTRQPTEGRAREGGLRFGEMEKDCLVGHGASMLLRERLLESSDKTTIWVCENCG 1074
Query: 359 NV--IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
+ P C +C + V Y KLL QEL+ +G++++
Sbjct: 1075 YMGWFDARKNTPVCPVCGDKGRLSPVEVSYAFKLLLQELT-GLGLSVRL 1122
>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
Length = 1175
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 134/507 (26%), Positives = 200/507 (39%), Gaps = 139/507 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVKSRPSDDMLNFGK--------------------------IQSKSGDIVIGKYAEI 135
+ R D F K I+ D++IGK +
Sbjct: 819 E----TKRMGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITL 874
Query: 136 GA---------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
D S L+++E G+V +V+L+ N +G F + +R V
Sbjct: 875 PENDDELEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIP 930
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
+GDKF+S HGQKG G E P L+E GK
Sbjct: 931 QIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIECIQGKL 990
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
GA G + ATPF + + +S LL G G ++ +
Sbjct: 991 GANKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK------ 1037
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGE
Sbjct: 1038 --------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGE 1089
Query: 334 MKCDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADD 378
M+ DC I+HGA+ L ERL C +AN+ C+ C +
Sbjct: 1090 MERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFE---CKGCKNKTQ 1146
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKF 405
I + +PY AKLL QEL SM I +
Sbjct: 1147 ISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|150399423|ref|YP_001323190.1| DNA-directed RNA polymerase subunit B' [Methanococcus vannielii SB]
gi|160370008|sp|P41557.2|RPOB1_METVS RecName: Full=DNA-directed RNA polymerase subunit B'
gi|150012126|gb|ABR54578.1| RNA polymerase Rpb2 domain 6 [Methanococcus vannielii SB]
Length = 611
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 203/491 (41%), Gaps = 106/491 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ V+N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R + N G + + +SGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRD----LRVPEFGDKF 364
Query: 187 SSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
+S HGQKGV+G + E P + + + A M+ G V + + +
Sbjct: 365 ASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECR 424
Query: 240 SFVSQLLNCIGA---RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL---IFTWITFY 293
+ + G R++ + F H +++ R L IF + +Y
Sbjct: 425 RVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTG--------RKLECEIFVGVAYY 476
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL- 352
Q+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+ L ERL
Sbjct: 477 QKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKERLL 536
Query: 353 ------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQE 394
KC +A + G +C +C ++D I + Y KLL E
Sbjct: 537 DESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDE 595
Query: 395 LSFSMGITLKF 405
L SMGI K
Sbjct: 596 LK-SMGIDPKL 605
>gi|448388148|ref|ZP_21565088.1| DNA-directed RNA polymerase subunit B' [Haloterrigena salina JCM
13891]
gi|445670799|gb|ELZ23396.1| DNA-directed RNA polymerase subunit B' [Haloterrigena salina JCM
13891]
Length = 609
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/496 (26%), Positives = 206/496 (41%), Gaps = 111/496 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYA- 133
E+ ++D++ +R D D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVR-GARGEDAYNHLDEDGLVNPETEVDENSVLLGKTSP 304
Query: 134 --------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVH 178
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 305 PRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----R 360
Query: 179 SACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQ 237
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 361 IPELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL--- 415
Query: 238 HQSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIF 287
+ +L + G R G F+ + F+ + + + + IF
Sbjct: 416 -EMIGGKLGSMEGRRVDGTPFLGEDEDELRDGLEDAGFDSAGKETMYSGVTGEKIEAEIF 474
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+
Sbjct: 475 VGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMT 534
Query: 348 LHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 535 LKERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLL 591
Query: 393 QELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 592 DEMK-ALGIAPRLELE 606
>gi|581388|emb|CAA51727.1| DNA-directed RNA polymerase [Methanococcus vannielii]
Length = 614
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 203/491 (41%), Gaps = 106/491 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + Q++G P N R+DT L YPQ PL
Sbjct: 135 ILGIGAGVAPYPEHNSAPR---ITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 191
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ V+N+ASLE G+ RS ES++
Sbjct: 192 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEK 251
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R + N G + + +SGD+++GK +
Sbjct: 252 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQ 311
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 312 EITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRD----LRVPEFGDKF 367
Query: 187 SSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
+S HGQKGV+G + E P + + + A M+ G V + + +
Sbjct: 368 ASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECR 427
Query: 240 SFVSQLLNCIGA---RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL---IFTWITFY 293
+ + G R++ + F H +++ R L IF + +Y
Sbjct: 428 RVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTG--------RKLECEIFVGVAYY 479
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL- 352
Q+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+ L ERL
Sbjct: 480 QKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKERLL 539
Query: 353 ------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQE 394
KC +A + G +C +C ++D I + Y KLL E
Sbjct: 540 DESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDE 598
Query: 395 LSFSMGITLKF 405
L SMGI K
Sbjct: 599 LK-SMGIDPKL 608
>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
CBS 127.97]
Length = 1210
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 195/489 (39%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 743 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 803 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSHSNGTK 860
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 861 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 919
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 920 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 975
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 976 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTP 1035
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + + G ++ K Y + P+ +
Sbjct: 1036 F----GGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLTY---------Y 1073
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1074 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1133
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + +C+ C S+ ++K +PY AKLL QEL FSM
Sbjct: 1134 QLLLERLMISSDRHEVDVCESCGFMGYSSWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSM 1192
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1193 NVVARLRLQ 1201
>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
Length = 1178
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/493 (26%), Positives = 201/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 705 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 761
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA--EV 99
L + L EDS+++N +++E G FRS Y++ E
Sbjct: 762 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEA 821
Query: 100 DNKDI----QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++K I + +PS DD + I+ D++IGK +
Sbjct: 822 ESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETD 881
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 882 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 937
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 938 KFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANK 997
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 998 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1040
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1041 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1096
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1097 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1153
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1154 RLPYAAKLLFQEL 1166
>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1175
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 206/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL LFYP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLFYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVITRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + ++ D++IGK +
Sbjct: 819 ESKRIGDQEEQFEKPNRQTCQGMRNAMYDKLDDDGIIAPGVRVSGDDVIIGKTITLPDND 878
Query: 136 ----GA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
GA D S L+++E G V +V+++ N +G F + +R V +GD
Sbjct: 879 DELEGATKRYTKRDASTFLRNSETGCVDQVMITLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNELMYNGHTGR----------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
Length = 1175
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVKS------RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 819 ESKRIGEQEEQFEKPTRQTCSGMRHALYDKLDDDGIISPGVRVSGDDVVIGKTMTLPENE 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFFGPTYYQRLKHMVDDKIHSRARGPLQILVRQPSEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|448347127|ref|ZP_21536006.1| DNA-directed RNA polymerase subunit B' [Natrinema altunense JCM
12890]
gi|242392368|dbj|BAH80397.1| RNA polymerase subunit B' [Natrinema altunense]
gi|445631464|gb|ELY84696.1| DNA-directed RNA polymerase subunit B' [Natrinema altunense JCM
12890]
Length = 609
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 204/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L + G R G F+ + F+ + + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|242392350|dbj|BAH80388.1| RNA polymerase subunit B' [Haloterrigena sp. GSL-11]
Length = 609
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 204/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L + G R G F+ + F+ + + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|322696543|gb|EFY88334.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 1157
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/501 (27%), Positives = 203/501 (40%), Gaps = 124/501 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 LLGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS++ C VFR Y E
Sbjct: 739 ITKTIQLVHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRK--YTTE 796
Query: 99 VDNKDIQVKSRPSD--DMLNFGKIQS-------------------KSGDIVIGKYAEIG- 136
+ + R D + +N G + KSG++++ K +
Sbjct: 797 LQKYPNGRRERIGDPVNQVNGGTTRREEKYEALDDDGLATVGYRVKSGEVMVKKETPLDL 856
Query: 137 --------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D +I + + + KV++S + V RQ+ L
Sbjct: 857 TTTGIGLDRGPSEYRDSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQT----RRPEL 912
Query: 183 GDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC 216
GDKFSS HGQKGV+G + T +LLE GK +
Sbjct: 913 GDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSRMTVGKLLECLTGKASI 972
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
DG Y G +SQ+L + G ++ K YF L P++
Sbjct: 973 IDGRPDYGF------GDAFRSHPVKDMSQVL-----LDYGFSWEGKDYFTSGLTGEPLE- 1020
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ IF +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+
Sbjct: 1021 --------AYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEME 1072
Query: 336 CDCLIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAK 389
DCLIA+GAS L ERL + ++ Q+ + G YC C S + + +PY AK
Sbjct: 1073 RDCLIAYGASQLLLERLMLSSDGVTLDICQQCGLFGYKGYCNTCKSTRQVTQMQMPYAAK 1132
Query: 390 LLSQEL-SFSMGITLKFDTQL 409
LL QEL S ++G+ L+ + +
Sbjct: 1133 LLVQELISMNVGVRLQLEDEF 1153
>gi|242392338|dbj|BAH80382.1| RNA polymerase subunit B' [Halostagnicola larsenii XH-48]
Length = 609
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 203/492 (41%), Gaps = 109/492 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDEDGLVNPETDVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L Q EA + + +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHLAPQEDMPFTEAGVVPDLV--INPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L G R G F+ + FE + + + + IF
Sbjct: 417 MIGGKLGAMEGRRVDGTPFLGEDEDELRGGLEESGFESSGKETMYSGVTGEKIEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 IIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREFINVCGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFD 406
+ ++GI + +
Sbjct: 594 MK-ALGIAPRLE 604
>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
Length = 1176
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRLGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+++ N +G F + +R V +GD
Sbjct: 879 DELEGTTRRYTKRDASTFLRNSETGIVDQVMVTLNREGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISSLLQEYGYHLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|397771994|ref|YP_006539540.1| RNA polymerase subunit B' [Natrinema sp. J7-2]
gi|448342573|ref|ZP_21531521.1| DNA-directed RNA polymerase subunit B' [Natrinema gari JCM 14663]
gi|397681087|gb|AFO55464.1| RNA polymerase subunit B' [Natrinema sp. J7-2]
gi|445625328|gb|ELY78690.1| DNA-directed RNA polymerase subunit B' [Natrinema gari JCM 14663]
Length = 609
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/496 (25%), Positives = 207/496 (41%), Gaps = 111/496 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQ 237
LGDKF+S HGQKGV+G L P + + +G L+ +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHL--APQEDM-PFTEEGVVPDLVLNPHALPSRMTVGHIL--- 415
Query: 238 HQSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIF 287
+ +L + G R G F+ + F+ + + + + IF
Sbjct: 416 -EMIGGKLGSMEGRRVDGTPFLGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIF 474
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+
Sbjct: 475 VGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMT 534
Query: 348 LHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 535 LKERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLL 591
Query: 393 QELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 592 DEMK-ALGIAPRLELE 606
>gi|448336440|ref|ZP_21525539.1| DNA-directed RNA polymerase subunit B' [Natrinema pallidum DSM
3751]
gi|242392372|dbj|BAH80399.1| RNA polymerase subunit B' [Natrinema pallidum]
gi|445629180|gb|ELY82474.1| DNA-directed RNA polymerase subunit B' [Natrinema pallidum DSM
3751]
Length = 609
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/496 (25%), Positives = 207/496 (41%), Gaps = 111/496 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQ 237
LGDKF+S HGQKGV+G L P + + +G L+ +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHL--APQEDM-PFTEEGVVPDLVLNPHALPSRMTVGHIL--- 415
Query: 238 HQSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIF 287
+ +L + G R G F+ + F+ + + + + IF
Sbjct: 416 -EMIGGKLGSMEGRRVDGTPFLGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIF 474
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+
Sbjct: 475 VGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMT 534
Query: 348 LHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 535 LKERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLL 591
Query: 393 QELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 592 DEMK-ALGIAPRLELE 606
>gi|156093703|ref|XP_001612890.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148801764|gb|EDL43163.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Plasmodium vivax]
Length = 1339
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 140/310 (45%), Gaps = 72/310 (23%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1055 DCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS----VRVPQIGDKFASRHGQKGTIG 1110
Query: 198 FLEQTP--------------------------AQLLEAALGK-GACDGLMSYATPFATST 230
+T L+E GK A +G ATPF+
Sbjct: 1111 ITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSR-- 1168
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
IT Q +SQ L+ +G G ++ + +++S IF
Sbjct: 1169 ---ITVQE---ISQRLHSLGYEKYGNDVLYNGHNG--------------KMLKSKIFIGP 1208
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1209 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1268
Query: 351 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1269 RLFEESDAYRVHVCDNCGLCCIADINKNAY---ECTVCNSKTNISQIYIPYACKLLFQEL 1325
Query: 396 SFSMGITLKF 405
+M I K
Sbjct: 1326 -MTMAIYPKL 1334
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN NIR+DTL L+YPQRP
Sbjct: 722 SLILGVCASIIPFSDHNQSPRN--TYQS-AMGKQAMGIYVTNFNIRLDTLAHLLYYPQRP 778
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA 97
L + + L EDSL+MNQ+S++ G+FRS Y+
Sbjct: 779 LVCTKVMEYLRFRDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRT 834
>gi|374635617|ref|ZP_09707212.1| DNA-directed RNA polymerase subunit B [Methanotorris formicicus
Mc-S-70]
gi|373561683|gb|EHP87912.1| DNA-directed RNA polymerase subunit B [Methanotorris formicicus
Mc-S-70]
Length = 599
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 200/495 (40%), Gaps = 127/495 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G+ P + + + Q++G P +N R+DT L YPQ P
Sbjct: 117 SVILGIGAGVAPYPEHNSAPR---ITMAAAMGKQSLGIPMSNFRWRLDTRGHILHYPQVP 173
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESY 95
+ + LG RP ED+ ++N+AS++ G+ RS +SY
Sbjct: 174 IVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAFIINKASIDRGLGRSTFFRTYDSY 233
Query: 96 K-----AEVDNKDIQVKS----RPSDDMLNFGK-------IQSKSGDIVIGKYA------ 133
+ +VD +I K R + N G+ + KSGD++IGK +
Sbjct: 234 EKRYPGGQVDRFEIPEKGVRGYRAEEAYRNLGEDGLVEPECEVKSGDVIIGKTSPPRFLE 293
Query: 134 --EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
EI D S+ ++H E G+V V+LS +G V +R + LGD
Sbjct: 294 EHEISLQTKSQRRDTSVTVRHGEEGVVDCVILSETKEGNRLVKVRVRD----LRIPELGD 349
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVS 243
KF+S HGQKGV+G + P + + D +++ +A P + G
Sbjct: 350 KFASRHGQKGVIGLI--VPQEDMPFTESGIVPDLIINPHAIPSRMTVG------------ 395
Query: 244 QLLNCIGA--------RNSGITFI---------------FKHYFLFCLFECPMDWIAFIC 280
Q+L IG R G F FKH+ +++ +
Sbjct: 396 QVLEMIGGKVGSLECRRVDGTIFSGEKEWDLRKALEEHGFKHHGKEVMYDGKTGKKFEV- 454
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
IF + +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+
Sbjct: 455 ----EIFIGVVYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLV 510
Query: 341 AHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADD------IIK 381
HGA+ L ERL C +A + G YC IC ++ I
Sbjct: 511 GHGAAMLLKERLLDESDPDDEYVCVNCGEIA-IFDHRRGIKYCPICGETEELHDNRKIPS 569
Query: 382 ANVPYGAKLLSQELS 396
+PY KLL EL
Sbjct: 570 VRIPYAFKLLLDELK 584
>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
Length = 1222
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 197/496 (39%), Gaps = 134/496 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IP + + YQ+ QAIG + N R+DT+ L+YPQ P
Sbjct: 745 SLILGVCGSFIPFSDHNQSPRN--TYQAA-MGKQAIGINSLNFQFRMDTMAHILYYPQTP 801
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C G EDS++M+Q +++ G+FRS Y+ D
Sbjct: 802 LVVTRAMKFMNYKNFPNGINSIVAIACYGGYNQEDSIIMSQDAIDRGLFRSVFYRCYRDE 861
Query: 102 KD----------------------------------IQVKSRPSDDMLNFGKI------Q 121
+ + +R S D + GK +
Sbjct: 862 EKTKFGGLKEIFEIPKFEDCIGCKTGSYQKLDLDGLVSEGTRVSGDDIIIGKTVPYDFSK 921
Query: 122 SKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
KS + K + D S + E G+V KV++ ++D G + IR V
Sbjct: 922 IKSSLAPLEKTLKFKKDASTAARSFESGVVDKVMIGTSDLGTKLVKIRIRS----VRIPQ 977
Query: 182 LGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-G 214
+GDKF+S HGQKG++G L T LLE L K
Sbjct: 978 IGDKFASRHGQKGIVGMLYKQVDLPFTKDGIIPDIIMNPHAIPSRMTIGHLLEGLLSKVS 1037
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G+ +PF T I+++ +S + RN E +
Sbjct: 1038 ALGGMEGDGSPFCNITVEKISKKLESLNFEKNGWEIMRNG---------------ETGNN 1082
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ ++IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM
Sbjct: 1083 -------LNAMIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEM 1135
Query: 335 KCDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDI 379
+ DC+++HGAS L +RL ++ +AN +R+ CR C + + I
Sbjct: 1136 ERDCMMSHGASIFLKDRLMDQSDAFSIFLCDLCGLIAIANPKKRIFE---CRSCLNRNSI 1192
Query: 380 IKANVPYGAKLLSQEL 395
+PY KLL QEL
Sbjct: 1193 SLVKIPYACKLLFQEL 1208
>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
Length = 1175
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 202/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ECKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELDGTTKKFSKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMIFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYHLRGNEVMYNGHTGR----------- 1036
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1037 ---KINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
[Pyrococcus horikoshii OT3]
Length = 1117
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 193/447 (43%), Gaps = 100/447 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDIQVKS-----------RPSD 112
ED++++N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGYRGEKYYRHLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYAE--------IGA-------DHSIKLKHTERGLVLKVLLS 157
D L F + + + D++IG+ + +GA + S+ ++ +E+G+V KV+++
Sbjct: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSEKGIVDKVIIT 851
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 217
DG V++R + +GDKF+S HGQKGV+G + P + + D
Sbjct: 852 ETGDGTKLVKVTVRD----LRIPEIGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPD 905
Query: 218 GLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FK 261
+++ + P + G ++ ++ ++ G R G FI FK
Sbjct: 906 LIVNPHGIPSRMTVGQLL----EAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFK 961
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
H ++ D I + IF I +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 HTGREIMY----DGITGKRF-EADIFIGIIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1016
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGPY 369
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + Y
Sbjct: 1017 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAIEDKRRHKVY 1076
Query: 370 CRICNSADDIIKANVPYGAKLLSQELS 396
C +C + I K + Y KLL EL
Sbjct: 1077 CPVCGEEERISKVEMSYAFKLLLDELK 1103
>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
Length = 1210
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 195/489 (39%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 743 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 803 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSYSNGTK 860
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 861 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 919
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 920 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 975
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 976 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTP 1035
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + + G ++ K Y + P+ +
Sbjct: 1036 F----GGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLTY---------Y 1073
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1074 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1133
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + +C+ C S+ ++K +PY AKLL QEL FSM
Sbjct: 1134 QLLLERLMISSDRHEVDVCESCGFMGYSSWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSM 1192
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1193 NVVARLRLQ 1201
>gi|302927105|ref|XP_003054428.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735369|gb|EEU48715.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1156
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 200/497 (40%), Gaps = 117/497 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYK-- 96
+G ED+LV+N+AS++ C VFR + +
Sbjct: 739 ISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 798
Query: 97 ----------AEVDNKDIQVKSRP------SDDMLNFGKIQSKSGDIVIGKYAEIGA--- 137
+ N++ +VK R DD L + +G+ +I K +
Sbjct: 799 KYPNGRRERIGDPQNEEGKVKQRIKKHEGLDDDGLAIVGYRIHNGEAMIKKETPLDQTTT 858
Query: 138 ------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
D S+ + + + KV++S + V RQ+ LGDK
Sbjct: 859 GIGMDRGPSEYRDSSVSYRIADPAYIDKVMVSQTEKDTTVIKVQTRQT----RRPELGDK 914
Query: 186 FSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH----Q 239
FSS HGQKGV+G + + PF+ T +I H +
Sbjct: 915 FSSRHGQKGVVGII-------------------VDQEDLPFSDKGLTPDIIMNPHGFPSR 955
Query: 240 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL------------------ 281
V +LL C+ + S I + F P++ ++ + +
Sbjct: 956 MTVGKLLECLTGKASIIHGRPDYGFGDAFRSHPLEEMSKVLVDHGFSWEGKDYFTSGVTG 1015
Query: 282 --VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ + IF +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCL
Sbjct: 1016 EPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPKAILTRQPTEGRSREGGLRLGEMERDCL 1075
Query: 340 IAHGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQ 393
IA+GAS L ERL + I + G YC C S ++ K +PY AKLL Q
Sbjct: 1076 IAYGASQLLLERLMISSDGTEIDICQQCGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQ 1135
Query: 394 EL-SFSMGITLKFDTQL 409
EL S ++G+ L+ + +
Sbjct: 1136 ELISMNVGVRLQMEDEF 1152
>gi|448312201|ref|ZP_21501951.1| DNA-directed RNA polymerase subunit B' [Natronolimnobius
innermongolicus JCM 12255]
gi|242392388|dbj|BAH80407.1| RNA polymerase subunit B' [Natronolimnobius innermongolicus]
gi|445602708|gb|ELY56680.1| DNA-directed RNA polymerase subunit B' [Natronolimnobius
innermongolicus JCM 12255]
Length = 609
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 204/493 (41%), Gaps = 109/493 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETEVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L + G R G F+ + F + + + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDESKLRDGLEDAGFNSAGKEVMYSGISGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL +C V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFD 406
E+ ++GI + +
Sbjct: 593 EMK-ALGIAPRLE 604
>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
Length = 1176
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 204/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 820 ESKKIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETD 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DDLDGTTKRYSKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G + G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYQLRGNEVMYNGHTGR----------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 KLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
vitripennis]
Length = 1175
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 133/504 (26%), Positives = 208/504 (41%), Gaps = 133/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSIILNTSAVERGFFRSVFYRSYKDS 818
Query: 102 K-----DIQVK-SRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEIGA- 137
+ D++ + +P+ D +++ G I+ D++IGK +
Sbjct: 819 ETKRLGDVEEQFEKPNRQTCQGMRNAIYDKLDEDGIISPG-IRVSGDDVIIGKTMTLPET 877
Query: 138 --------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+++E G+V +V+L+ N +G F + +R V +G
Sbjct: 878 DDDLDSSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIG 933
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG G E P L+E GK A
Sbjct: 934 DKFASRHGQKGTCGIQYRQEDMPFTCEGMTPDIIINPHAIPSRMTIGHLIECIQGKVSAN 993
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G + G ++ +
Sbjct: 994 KGEIGDATPFNDAV-------NVQKISTLLMEYGYQLRGNEIMYNGHTGRK--------- 1037
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+
Sbjct: 1038 -----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092
Query: 337 DCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIK 381
DC I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQ 1149
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1150 VRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
Length = 1149
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 135/482 (28%), Positives = 196/482 (40%), Gaps = 126/482 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 689 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIN 748
Query: 73 RP--------------------EDSLVMNQASLE-----CGVFRSESYKAE--------- 98
ED+LV+N++SL+ C V R + + +
Sbjct: 749 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKDI 808
Query: 99 -----VDNKDI--------------QVKSRPSDDMLNFGK-IQSKSGDIVIGKYAEIGAD 138
VD D +V SR + + K + + SGD +G+ ++
Sbjct: 809 LSGMRVDENDEPIFPHRALGPDGLGEVGSRIENGQVYANKCVPTNSGDSSLGQPQQVENH 868
Query: 139 HSIKL--KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
L K E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV
Sbjct: 869 REAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVC 924
Query: 197 GFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATS 229
G + Q T +++E GK G +G + Y T F
Sbjct: 925 GIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF--- 981
Query: 230 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
GG E+ +S++L G SG ++ CL ++ IF
Sbjct: 982 -GGSKLEE----MSKILVEKGFSYSGKDMLYSGITGECL--------------QAYIFFG 1022
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L
Sbjct: 1023 PIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLL 1082
Query: 350 ERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 403
ERL +V N + +C C SA++IIK +PY AKLL QEL SM I
Sbjct: 1083 ERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAP 1141
Query: 404 KF 405
+
Sbjct: 1142 RL 1143
>gi|429851912|gb|ELA27071.1| DNA-directed RNA polymerase iii 130 kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 1451
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 193/464 (41%), Gaps = 121/464 (26%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFW--------------------ILISDCLGRP 74
QAIG N R+DTLL L YPQRP+ I++S
Sbjct: 708 QAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDI 767
Query: 75 EDSLVMNQASLE-----CGVFRSESYKAE---------------VDNKDIQVKSRPS--D 112
ED+LV+N+AS + C VFR Y AE V++++ + K + D
Sbjct: 768 EDALVLNKASCDRGFGRCQVFRK--YTAELQKYPNGRRERIGDPVNDENGRTKKHEALDD 825
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLS 157
D L + SG+ +I K + D SI + + + KV++S
Sbjct: 826 DGLAIVGYKINSGETMIKKETPLDTGSTGIGMDRGPSEFRDSSISYRIADPAYIDKVMVS 885
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------ 199
+ V RQ+ LGDKFSS HGQKGV+G +
Sbjct: 886 HTERETMVVKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDTGLVPDII 941
Query: 200 --------EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 250
T +LLE GK + DG Y F +F S L +
Sbjct: 942 MNPHGFPSRMTVGKLLECLTGKASVLDGRKDYG--FG-----------DAFRSHPLEQMS 988
Query: 251 AR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
A + G ++ K YF + P++ + IF +YQ+ HM +DK+ R+
Sbjct: 989 AALVDHGFSWEGKDYFTSGITGEPLE---------AYIFNGPIYYQRLKHMVQDKMHSRS 1039
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR-- 363
G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + ++ Q+
Sbjct: 1040 RGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQLDICQQCG 1099
Query: 364 VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKF 405
+ G YC C S ++ + +PY AKLL QEL S ++G+ L+
Sbjct: 1100 LFGYKGYCHTCKSTREVTQMTMPYAAKLLVQELISMNVGVRLQL 1143
>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
Length = 1124
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 138/482 (28%), Positives = 197/482 (40%), Gaps = 95/482 (19%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG++ IIP + + YQS + QA+G N IR DT L YPQ+P+
Sbjct: 644 ILGITASIIPYPEHNQSPRN--TYQSA-MAKQALGLYAANYQIRTDTRAHLLHYPQKPIV 700
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAEVD 100
+ +G RP ED+++MN++S+E G+FRS Y AE
Sbjct: 701 QTRALEAIGYTERPAGNNAIFALMSYTGYNMEDAVIMNKSSIERGMFRSTFFRLYSAE-- 758
Query: 101 NKDIQVKSRPSDDML--------NFGK---------------IQSKSGDIVIGK------ 131
+I+ D++L GK + K GD++IGK
Sbjct: 759 --EIKYPGGQEDEILLPEPGVRGYKGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRF 816
Query: 132 ---YAEIGADH-----SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
+ E+ D SI +H ERG V VL++ +G V +R + +G
Sbjct: 817 LQEFKELSPDQAKRDTSIITRHGERGTVDLVLVTETSEGNKLVKVRVRD----LRIPEIG 872
Query: 184 DKFSSMHGQKGVLGF-LEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFV 242
DKF++ HGQKGV+G + Q + L L +A P + G ++ FV
Sbjct: 873 DKFATRHGQKGVVGMIIPQVDMPYTTSGLTPDII--LNPHALPSRMTVGQIMEALSGKFV 930
Query: 243 SQLLNCIGAR---NSGITFIFKHY----FLFCLFECPMDWIAFICLVRSLIFTWITFYQQ 295
+ I A N I I K +L E D L ++F I +YQ+
Sbjct: 931 AATGESIDATPFYNIPIEEIQKKLLNSGYLGDGSEVVYDGRTGEKLKGRILF-GIVYYQK 989
Query: 296 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL--- 352
HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI +GA+ + +RL
Sbjct: 990 LHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDN 1049
Query: 353 -------KCKNVANV--IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 403
C+ V R C I + V Y KLL QEL SM I
Sbjct: 1050 SDKATVYVCEQCGYVGWYDRSKNKYICPIHGDKSTLYPVAVSYAFKLLLQEL-MSMVIAP 1108
Query: 404 KF 405
K
Sbjct: 1109 KL 1110
>gi|242392370|dbj|BAH80398.1| RNA polymerase subunit B' [Natrinema ejinorense]
Length = 609
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 204/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETKVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L + G R G F+ + F + + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDEDELRQGLEDAGFNSAGKETMYSGISGEKIDAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHVCANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
longeracemosa]
Length = 575
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 168/414 (40%), Gaps = 115/414 (27%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 193 SLILGVCASIIPFPDHNQSPRN----TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQ 247
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYK 96
+PL + L EDS++MNQ+S++ G FRS SY+
Sbjct: 248 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLSFRSYR 307
Query: 97 AEVDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
E VK RP+ DD L I+ D++IGK I
Sbjct: 308 DEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDDDGLAPPGIRVSGEDVIIGKTTPIAQ 367
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
DHS L+H+E G+V +VLL++N DG F V +R V +GD
Sbjct: 368 EESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGD 423
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KFSS HGQKG +G E P QL+E +GK A
Sbjct: 424 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 483
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +S+ L+ G + G ++ + L
Sbjct: 484 GKEGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRKLT-------- 527
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ F
Sbjct: 528 ------AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575
>gi|242392342|dbj|BAH80384.1| RNA polymerase subunit B' [Haloterrigena longa]
Length = 609
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 204/495 (41%), Gaps = 109/495 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETKVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L + G R G F+ + F + + + + IF
Sbjct: 416 EMIGGKLGSMEGRRVDGTPFLGEDEDELRQGLEDAGFNSAGKETMYSGISGEKIDAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHICANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 593 EMK-ALGIAPRLELE 606
>gi|242398379|ref|YP_002993803.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
gi|242264772|gb|ACS89454.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
Length = 1118
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/454 (26%), Positives = 196/454 (43%), Gaps = 104/454 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I + +G RP
Sbjct: 672 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMEAVGFEQRPAGQNFIVAVLSYSGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED+++MN+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAVIMNKASIERGLARSTFFRTYEAEEKKYMGGQTDKFEIPDPTVRGFLGEKYYRNLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYA---------EIGA-------DHSIKLKHTERGLVLKVLL 156
D + F + + + D+++ + + +GA + SI ++ E G++ K+++
Sbjct: 792 DGIAFPESKVQGKDVLVARTSPPRFLEEQTSLGAGILQGRRETSITMRPGEEGIIDKIII 851
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ DG V++R + GDKF+S HGQKGV+G + P + +
Sbjct: 852 TETGDGTKLVKVTVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTENGIVP 905
Query: 217 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------F 260
D +++ + P + G +I ++ ++ + G R G FI F
Sbjct: 906 DLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRIDGTAFIGEPEEKLRKELEELGF 961
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
KH ++ D I + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 KHSGREVMY----DGITGRKF-EADIFVGVIYYQRLHHMVADKLHARSRGPVQVLTKQPT 1016
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 367
R R GG+ FGEM+ D LI HGAS L ERL C ++A V +
Sbjct: 1017 EGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDKTEAWICESCGHLA-VEDKRRDK 1075
Query: 368 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
YC +C ++I K + Y KLL E+ +MGI
Sbjct: 1076 IYCPVCGEEENISKVEMSYAFKLLLDEIK-AMGI 1108
>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
nigrotuberculatum]
Length = 1177
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 205/504 (40%), Gaps = 133/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS+++N +++E G FRS SYK +
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYK-D 818
Query: 99 VDNKDI----QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI--- 135
++K I +V +P+ DD + ++ D++IGK +
Sbjct: 819 SESKRIGDQEEVFEKPNRQSCQGMRNAIYDKLDDDGIISPGLRVSGDDVIIGKTMTLPDN 878
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+++E GL+ +VLL+ N +G F + +R +G
Sbjct: 879 EDELEGTTKKYSKRDCSTFLRNSETGLIDQVLLTLNSEGYKFCKIRVRSE----RIPQIG 934
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG G E P L+E GK A
Sbjct: 935 DKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN 994
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 KGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGFSGRK--------- 1038
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+
Sbjct: 1039 -----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1093
Query: 337 DCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIK 381
DC IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 DCQIAHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQ 1150
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 VKLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|338970348|gb|AEJ33655.1| RNA polymerase subunit B' [Halorubellus salinus]
Length = 609
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 132/510 (25%), Positives = 206/510 (40%), Gaps = 141/510 (27%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMNQ S++ + RS ++
Sbjct: 187 QLSMVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNQGSVDRALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + D+++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDEDGLVNPETRVGENDVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
LGDKF+S HGQKGV+G + E P +LE GK
Sbjct: 363 ELGDKFASRHGQKGVVGHIAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKT 422
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
GA +G TPF T +++ + L G +SG ++
Sbjct: 423 GALEGRRVDGTPF--------TGENEDEIRGGLEDRGFHSSGKEILYSG----------- 463
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + IF + FYQ+ HM +K+ R+ G Q LT +P R R GG+ GE
Sbjct: 464 ---VSGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGE 520
Query: 334 MKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADD 378
M+ D LI HGA+ L ERL +C V NV QR V YC C D
Sbjct: 521 MERDVLIGHGAAMALKERLLDESDREFINVCGECGMSAVENVDQRRV---YCPNCGEETD 577
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
I + + Y KLL E+ ++GI + + +
Sbjct: 578 IHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 1210
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 195/489 (39%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 743 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 803 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSYSNGTK 860
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 861 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 919
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 920 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 975
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 976 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTP 1035
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + + G ++ K Y + P+ +
Sbjct: 1036 F----GGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLTY---------Y 1073
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1074 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1133
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + +C+ C S+ ++K +PY AKLL QEL FSM
Sbjct: 1134 QLLLERLMISSDRHEVDVCESCGFMGYSGWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSM 1192
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1193 NVVARLRLQ 1201
>gi|338970350|gb|AEJ33656.1| RNA polymerase subunit B' [Halorubellus litoreus]
Length = 609
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 132/510 (25%), Positives = 206/510 (40%), Gaps = 141/510 (27%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMNQ S++ + RS ++
Sbjct: 187 QLSMVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNQGSVDRALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + D+++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDEDGLVNPETRVGENDVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
LGDKF+S HGQKGV+G + E P +LE GK
Sbjct: 363 ELGDKFASRHGQKGVVGHIAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKT 422
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
GA +G TPF T +++ + L G +SG ++
Sbjct: 423 GALEGRRVDGTPF--------TGENEDEIRGGLEDRGFHSSGKEILYSG----------- 463
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + IF + FYQ+ HM +K+ R+ G Q LT +P R R GG+ GE
Sbjct: 464 ---VSGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGE 520
Query: 334 MKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADD 378
M+ D LI HGA+ L ERL +C V NV QR V YC C D
Sbjct: 521 MERDVLIGHGAAMALKERLLDESDREFINVCGECGMSAVENVDQRRV---YCPNCGEETD 577
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
I + + Y KLL E+ ++GI + + +
Sbjct: 578 IHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
50581]
Length = 1239
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 135/505 (26%), Positives = 199/505 (39%), Gaps = 124/505 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + K + AI F N R +T + L YPQRPL
Sbjct: 760 LLGYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAF---NQFERFETAMFLLDYPQRPLT 816
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYK-- 96
I G ED+L++N+++++ C ++RS S +
Sbjct: 817 STKILKLTGYERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELN 876
Query: 97 ----AEVDNKDIQVKSRPSDDMLNFGKIQS-------------KSGDIVIGK-------- 131
VD + P D + + + K+GDIVI K
Sbjct: 877 STGSKSVDGTKDVLLGPPKDHLKQYESYHAVEDDGLCAVGAHLKTGDIVINKGRHVTNIP 936
Query: 132 -------YAE--IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
AE I + S+K + KVL+++N+DG V R+ +
Sbjct: 937 GLSDGPEAAETLIKSPESLKSPLETITYIDKVLVTTNNDGNLLIKVLTREP----RRPEV 992
Query: 183 GDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGAC 216
GDKFSS HGQKGV G + T A+LLE K +C
Sbjct: 993 GDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSSC 1052
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G + T F T T + F+++L + + R +G ++ K L D
Sbjct: 1053 FRGEQTDGTCFRTKT-------DEEFIAELYDSL--RAAGFSYSGKDVLYSGLTG---DV 1100
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
I IF +YQ+ HM +DK+ R TG LT +P R+ GG+ GEM+
Sbjct: 1101 IPV------YIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEME 1154
Query: 336 CDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKANVP 385
DC I++GAS L ER C+ G +C C S D++K +P
Sbjct: 1155 RDCAISYGASALLLERFMLSSDEFLAYVCEACGLFSYERNGALWCPTCQSGKDVVKIRIP 1214
Query: 386 YGAKLLSQELSFSMGITLKFDTQLS 410
Y AKL+ QEL SMG+ ++ + S
Sbjct: 1215 YAAKLMIQEL-ISMGVLVRMQLEDS 1238
>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
Length = 1157
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 137/499 (27%), Positives = 206/499 (41%), Gaps = 120/499 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 LLGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAHNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYK-- 96
+++S ED+LV+N+AS++ C VFR + +
Sbjct: 739 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 798
Query: 97 --------------AEVDN---KDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG--- 136
E+DN + I+ DD L + SG+ ++ K +
Sbjct: 799 KYPNGRRERIGDPLNEIDNGVMRRIKKHEALDDDGLAIVGQRIHSGEAMVKKETPLDMTT 858
Query: 137 ------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D ++ + + + KV++S + V RQ+ LGD
Sbjct: 859 TGIGLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGD 914
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGA-CD 217
KFSS HGQKGV+G + T +LLE GK +
Sbjct: 915 KFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVH 974
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G Y F + EQ VS++L + G ++ K YF + P++
Sbjct: 975 GRKEYG--FGDAFRSHPVEQ----VSKVLV-----DHGFSWEGKDYFTSGITGEPLE--- 1020
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ D
Sbjct: 1021 ------AYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERD 1074
Query: 338 CLIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLL 391
CLIA+GAS L ERL + + ++ Q+ + G YC C S ++ K +PY AKLL
Sbjct: 1075 CLIAYGASQLLLERLMLSSDGVMIDICQQCGLFGYRGYCGTCKSTREVTKMQMPYAAKLL 1134
Query: 392 SQEL-SFSMGITLKFDTQL 409
QEL S ++G+ L+ + +
Sbjct: 1135 VQELISMNVGVRLQLEDEF 1153
>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
Length = 1175
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYK-- 96
L + L EDS+++N +++E G FRS SYK
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDA 818
Query: 97 --AEVDNKDIQ---------------VKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
V +++ Q + + DD + ++ D+VIGK +
Sbjct: 819 ESKRVGDQEEQFEKPMRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKKFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHLIECLQGKVSANK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1151 RLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
Length = 1196
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 195/489 (39%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 729 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 788
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 789 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSYSNGTK 846
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 847 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 905
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 906 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 961
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 962 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTP 1021
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + + G ++ K Y + P+ +
Sbjct: 1022 F----GGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLTY---------Y 1059
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1060 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1119
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + +C+ C S+ ++K +PY AKLL QEL FSM
Sbjct: 1120 QLLLERLMISSDRHEVDVCESCGFMGYSGWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSM 1178
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1179 NVVARLRLQ 1187
>gi|390371063|dbj|GAB64944.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 1335
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 140/310 (45%), Gaps = 72/310 (23%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1051 DCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1106
Query: 198 FLEQTP--------------------------AQLLEAALGK-GACDGLMSYATPFATST 230
+T L+E GK A +G ATPF+
Sbjct: 1107 ITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK-- 1164
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
IT Q +SQ L+ +G G ++ + +++S IF
Sbjct: 1165 ---ITVQE---ISQRLHNLGYEKYGNDVLYNGHNG--------------KMLKSKIFIGP 1204
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1205 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1264
Query: 351 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1265 RLFEESDAYRVHVCDNCGLCCIADINKNAYE---CTVCNSKTNISQIYIPYACKLLFQEL 1321
Query: 396 SFSMGITLKF 405
+M I K
Sbjct: 1322 -MTMAIYPKL 1330
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN NIR+DTL L+YPQRP
Sbjct: 725 SLILGVCASIIPFSDHNQSPRN--TYQS-AMGKQAMGIYVTNFNIRLDTLAHLLYYPQRP 781
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA 97
L + + L EDSL+MNQ+S++ G+FRS Y+
Sbjct: 782 LVCTKVMEYLRFRDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRT 837
>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
Length = 1157
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 200/494 (40%), Gaps = 110/494 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 VLGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES---- 94
+G ED+LV+N+AS++ C VFR +
Sbjct: 739 ISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQ 798
Query: 95 --------------YKAEVDNKDIQVKSRP-SDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ E NK K DD L + SG+ ++ K +
Sbjct: 799 KYPNGRRERIGDPEMEGEGKNKRRITKHEALDDDGLAIVGYKVHSGEAMVKKETPLDQTS 858
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S+ + + + KV++S + V RQ+ LGD
Sbjct: 859 TGIGLDRGPGEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGD 914
Query: 185 KFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFV 242
KFSS HGQKGV+G + EQ ++ L + D +M+ + P + G
Sbjct: 915 KFSSRHGQKGVVGIIVEQEDLPFSDSGL---SPDIIMNPHGFPSRMTVG----------- 960
Query: 243 SQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL--------------------V 282
+LL C+ + S I + F P++ ++ + + +
Sbjct: 961 -KLLECLTGKASIIHGRPDYGFGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPL 1019
Query: 283 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAH 342
+ +F +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+
Sbjct: 1020 EAYVFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAY 1079
Query: 343 GASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL- 395
GAS L ERL + I + G YC C S ++ K +PY AKLL QEL
Sbjct: 1080 GASQLLLERLMISSDGTEIDICQQCGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQELI 1139
Query: 396 SFSMGITLKFDTQL 409
S ++G+ L+ D +
Sbjct: 1140 SMNVGVRLQMDDEF 1153
>gi|395646423|ref|ZP_10434283.1| DNA-directed RNA polymerase subunit B [Methanofollis liminatans DSM
4140]
gi|395443163|gb|EJG07920.1| DNA-directed RNA polymerase subunit B [Methanofollis liminatans DSM
4140]
Length = 604
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 187/470 (39%), Gaps = 129/470 (27%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
QA+GF N +R DT L Y Q+P+ + SD +G RP
Sbjct: 159 QALGFAAANMKLRPDTRANLLHYCQKPMVYTQASDLIGSDDRPAGQNFVVAILSYEGYNI 218
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDIQVKSRP------------- 110
ED+L+ N+AS+E G+ RS +Y+ E VD IQ+
Sbjct: 219 EDALIFNKASIERGLGRSHFFRTYEGEERRYPGGQVDR--IQIPDEEVSGAHGAEYYQNL 276
Query: 111 SDDMLNFGKIQSKSGDIVIGKYA---------------EIGADHSIKLKHTERGLVLKVL 155
DD + + D++IGK + E D S+ ++ E G+V V+
Sbjct: 277 DDDGVINPETNVHEKDVLIGKTSPPRFLEEPSGELIAVEKRRDTSVTMRSNEHGIVDTVI 336
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------- 203
++ ++ V R + +GDKF+S HGQKGV+G++ E P
Sbjct: 337 ITEGENSSRLVKVRTRD----IRVPEVGDKFASRHGQKGVVGWIVPQENMPFCEMGIAPD 392
Query: 204 --------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 248
+LE GK GA +G ATPF + + + + L
Sbjct: 393 LVINPHAVPSRMTIGHMLEMIGGKIGALEGRRIDATPFRG--------EREEDMRESLKR 444
Query: 249 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
+G ++G ++ F F I+ + +YQ+ HM K+ R+
Sbjct: 445 LGFSHTGREVMYDG-FTGKQFHAD-------------IYMGVIYYQKLYHMVSSKMHARS 490
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK 355
G Q LT +P R R GG+ FGEM+ D +I HGA+ L ERL KC
Sbjct: 491 RGPIQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERLLDESDKVQQYVCAKCG 550
Query: 356 NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
VA ++ R C C S DI + Y KLL E+ SMGI +
Sbjct: 551 MVA-MLDRKRNITRCLNCGSETDIYSVEMSYAFKLLLDEMK-SMGIAPRL 598
>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Metaseiulus occidentalis]
Length = 1178
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 203/503 (40%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 700 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 756
Query: 62 L--------------------FWILISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L ++S EDS+++N ++++ G FRS Y++ D+
Sbjct: 757 LTTTRSMEYLRFRELPAGINAIVAIMSYTGYNQEDSVILNASAVDRGFFRSVFYRSYKDS 816
Query: 102 KDIQ----------------------VKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ + + + DD + + D++IGK +
Sbjct: 817 ENKRMGDQEETFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPEND 876
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N DG F + +R V +GD
Sbjct: 877 DDLDSTNKRYSKRDASTFLRNSETGIVDQVMLTINSDGYKFCKIRVRS----VRIPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK A +
Sbjct: 933 KFASRHGQKGTCGVTYRQEDMPFTVEGLTPDIIINPHAIPSRMTIGHLIECLQGKVASNK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S +L G G ++ +
Sbjct: 993 GEIGDATPFNDAV-------NVQKISNILMEYGYHLRGNEVMYNGHTGR----------- 1034
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
V + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1035 ---KVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL + +AN+ + C+ C + I +
Sbjct: 1092 CQISHGAAQFLRERLFFASDPYRTHICNICGLIAIANLRNNIFE---CKGCRNKTQISQI 1148
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1149 TLPYACKLLFQEL-MSMNIAPRM 1170
>gi|448320529|ref|ZP_21510015.1| DNA-directed RNA polymerase subunit B' [Natronococcus amylolyticus
DSM 10524]
gi|242392380|dbj|BAH80403.1| RNA polymerase subunit B' [Natronococcus amylolyticus]
gi|445605431|gb|ELY59353.1| DNA-directed RNA polymerase subunit B' [Natronococcus amylolyticus
DSM 10524]
Length = 609
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 204/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDEDGLVNPETKVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L Q E + L +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L G R G F+ + F+ + + + + IF
Sbjct: 417 MIGGKLGAMEGRRVDGTPFLGEDEDELREGLEQNGFDSAGKETMYSGISGEKIEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 IIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREFIHICGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 594 MK-ALGIAPRLELE 606
>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Sporisorium
reilianum SRZ2]
Length = 1170
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 132/502 (26%), Positives = 196/502 (39%), Gaps = 152/502 (30%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQ 53
LLG G+IP Y SP QA GF N +R+DTLL
Sbjct: 696 LLGAVAGLIP-------------YPHHNQSPRNTYHCAMAKQAQGFIGHNQLVRIDTLLY 742
Query: 54 QLFYPQRPLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE 93
+ YPQ+P+ + +G ED+LV+N+ASL+ G RS+
Sbjct: 743 LMLYPQQPMVKSRTVELVGYDKLPGGTNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQ 802
Query: 94 SYK-------------------AEVDNKDIQVKSR----PSDDMLNFGKIQSKSGDIVIG 130
+ K A VD+ + + R +D + G+ + + GD+ +
Sbjct: 803 TMKKSSTVIRKYPNGTHDRLADAPVDDSTGKRQKRYDILEADGIAGVGE-RVEQGDVYVN 861
Query: 131 KYAEIGADHS----------------------IKLKHTERGLVLKVLLSSNDDGKNFAVV 168
K + A+ + + K G V +VL++ D +
Sbjct: 862 KQTPVNANDNSSAAIMIGASNAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKA 921
Query: 169 SIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------T 202
IRQ+ LGDKFSS HGQKGV+G + Q T
Sbjct: 922 LIRQT----RRPELGDKFSSRHGQKGVIGLIVQQEDMPFTDEGINPDIIMNPHGFPSRMT 977
Query: 203 PAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFI 259
+++E GK G G + Y T F G + + V N G SGIT
Sbjct: 978 VGKMIELLSGKAGVVTGTLQYGTAFG---GSKVDDMSALLVEHGYNYAGKETLTSGITG- 1033
Query: 260 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 319
EC ++ +YQ+ HM +DK+ R G LT +P
Sbjct: 1034 -------QPLEC-------------YVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQP 1073
Query: 320 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI---QR--VVG-GPYCRIC 373
R R GG+ GEM+ DCLI +GA+ L ERL + A + QR ++G +C C
Sbjct: 1074 TEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFTVHACQRCGLMGYNGFCPYC 1133
Query: 374 NSADDIIKANVPYGAKLLSQEL 395
+S+ +++ +PYG KL+ QEL
Sbjct: 1134 SSSKHVVQLTIPYGTKLMLQEL 1155
>gi|410955300|ref|XP_003984294.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Felis catus]
Length = 1135
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 129/471 (27%), Positives = 185/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G G + I K E +V + + SND G F
Sbjct: 805 QKLDDDGLPFIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTER 978
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 979 LYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1085 PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
NZE10]
Length = 1147
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 126/479 (26%), Positives = 198/479 (41%), Gaps = 120/479 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ P+ + +
Sbjct: 691 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQAPMVKTRTIELVK 750
Query: 73 RP--------------------EDSLVMNQASLECGVFRSESYK---------------- 96
ED+LV+N+AS + G R + +K
Sbjct: 751 YDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMPLKAYGNGHTDR 810
Query: 97 -AEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLK-------HTER 148
DN + + + +D ++ G ++ ++ D+ + K + S+ + H
Sbjct: 811 MGTKDNNNTRHRKIGTDGIVEVG-VELENSDMYMLKECPVNQATSVSQRDQKWSPMHMSY 869
Query: 149 GL-----VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 201
L KV++++N+ + RQ+ +GDKFSS HGQKGV+G L +
Sbjct: 870 KLPDPCYADKVMVTANEANSTIIKIQTRQT----RRPEIGDKFSSRHGQKGVVGLLAEQA 925
Query: 202 ------------------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQ 237
T ++LE GK G+++ + T+ GG E
Sbjct: 926 DMPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSGKA---GVLAGKHEYGTAFGGSKVE- 981
Query: 238 HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFI 297
+ G T + KH F + +C I L + F I +YQ+
Sbjct: 982 ---------------DMGRTLV-KHGFSYSGKDCLTSGITGESLPMYVFFGPI-YYQKLK 1024
Query: 298 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 357
HM +DK+ R+TG LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1025 HMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSD 1084
Query: 358 ANVIQ--RVVG----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 410
A+ + +V G +C+ C+S +++ +PY AKLL QEL M + +K QL+
Sbjct: 1085 AHEVDVCQVCGMMGYNGWCQSCSSTRSVVRMTMPYAAKLLIQEL---MSMNVKASLQLA 1140
>gi|221053005|ref|XP_002257877.1| DNA-directed RNA polymerase II second largest subunit [Plasmodium
knowlesi strain H]
gi|193807709|emb|CAQ38413.1| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium knowlesi strain H]
Length = 1371
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 140/310 (45%), Gaps = 72/310 (23%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1087 DCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1142
Query: 198 FLEQTP--------------------------AQLLEAALGK-GACDGLMSYATPFATST 230
+T L+E GK A +G ATPF+
Sbjct: 1143 ITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK-- 1200
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
IT Q +SQ L+ +G G ++ + +++S IF
Sbjct: 1201 ---ITVQE---ISQRLHNLGYEKYGNDVLYNGHNG--------------KMLKSKIFIGP 1240
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1241 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1300
Query: 351 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1301 RLFEESDAYRVHVCDNCGLCCIADINKNAY---ECTVCNSKTNISQIYIPYACKLLFQEL 1357
Query: 396 SFSMGITLKF 405
+M I K
Sbjct: 1358 -MTMAIYPKL 1366
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN NIR+DTL L+YPQRP
Sbjct: 761 SLILGVCASIIPFSDHNQSPRN--TYQS-AMGKQAMGIYVTNFNIRLDTLAHLLYYPQRP 817
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA 97
L + + L EDSL+MNQ+S++ G+FRS Y+
Sbjct: 818 LVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRT 873
>gi|389624163|ref|XP_003709735.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
70-15]
gi|351649264|gb|EHA57123.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
70-15]
gi|440467179|gb|ELQ36417.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae Y34]
gi|440480743|gb|ELQ61392.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
P131]
Length = 1158
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 206/486 (42%), Gaps = 96/486 (19%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 685 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 741
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS + C VFR + + +
Sbjct: 742 ITKTIELIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKHTAELQ 801
Query: 99 V--DNKD-----IQVKSRPSDDMLNFGKIQSK----------SGDIVIGKYAEIGA---- 137
+NK ++ R + I S SG++++ K I
Sbjct: 802 TYANNKSEKISGPEIDERTGKPAEKYAAIDSDGLARVGYRIHSGEVMLRKLTPIDQGSTG 861
Query: 138 -----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
+ S+ + + + KV++S + A V RQ+ LGDKF
Sbjct: 862 IGNDVGSNDYRETSLSYRVSNPSYIDKVMVSQTEKEHILAKVQTRQT----RRPELGDKF 917
Query: 187 SSMHGQKGVLGFL-EQTPAQLLEAAL------GKGACDGLMSYATPFATSTGGV-ITEQH 238
SS HGQKGV+G + EQ ++ L M+ F TG I E +
Sbjct: 918 SSRHGQKGVVGIIVEQEDMPFADSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASIVEGN 977
Query: 239 Q------SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+ +F S + +G G ++ K YF + P++ + +F
Sbjct: 978 RRYGYGDAFRSHPVEEMGKALIERGFSWEGKDYFTSGITGEPLE---------AYLFNGP 1028
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1029 IYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 1088
Query: 351 RLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 403
RL + A ++ QR + G YC+ C S ++ + +PY AKLL QEL S ++G+ L
Sbjct: 1089 RLMLSSDATKIDICQRCGLFGYKGYCQTCKSTKEVTEMTMPYAAKLLVQELISMNVGVRL 1148
Query: 404 KFDTQL 409
+ +
Sbjct: 1149 VLEDEF 1154
>gi|452208509|ref|YP_007488631.1| DNA-directed RNA polymerase subunit B' [Natronomonas moolapensis
8.8.11]
gi|452084609|emb|CCQ37956.1| DNA-directed RNA polymerase subunit B' [Natronomonas moolapensis
8.8.11]
Length = 608
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 124/494 (25%), Positives = 204/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 133 LMFGIGAGMIPYPEHNASPRITMGSGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 185
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 QLSIVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 245
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ D+ + + +D L + D+++GK +
Sbjct: 246 EGEERRYPGGQEDRFEIPEDDVRGARGEEAYTHLDEDGLVNPETDVGENDVLLGKTSPPR 305
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + V +R
Sbjct: 306 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDE----RVP 361
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L Q + L L +A P + G ++ +
Sbjct: 362 ELGDKFASRHGQKGVVGHLAPQEDMPFTQEGLVPDLV--LNPHALPSRMTVGHIL----E 415
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
++ + G R G F+ + + ++ + + + + + IF
Sbjct: 416 MLGGKVGSLEGRRVDGTPFLGENEDELREALVERGYKSDGKEVMYSGVTGEKIEAEIFVG 475
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 VIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 535
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ D+ + + Y KLL E
Sbjct: 536 ERLLDESDREEIYVCGQCGMSAVENVEQRRV---YCPNCDEETDVHEVEMSYAFKLLLDE 592
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 593 MK-ALGIAPRIELE 605
>gi|76800711|ref|YP_325719.1| DNA-directed RNA polymerase subunit B' [Natronomonas pharaonis DSM
2160]
gi|76556576|emb|CAI48147.1| DNA-directed RNA polymerase subunit B' [Natronomonas pharaonis DSM
2160]
Length = 610
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 124/494 (25%), Positives = 207/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 135 LMFGIGAGMIPYPEHNASPRITMGSGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 187
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 188 QLSIVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNKASIERALARSHFFRTY 247
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ + ++ + S +D L + D+++GK +
Sbjct: 248 EGEERRYPGGQEDHFEIPDDEVRGARGEEAYSHLDEDGLVNPETHVGENDVLLGKTSPPR 307
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + V +R
Sbjct: 308 FLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVKVRDE----RVP 363
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L P + + D +++ +A P + G ++ +
Sbjct: 364 ELGDKFASRHGQKGVVGHL--APQEDMPFTQDGVVPDLILNPHALPSRMTVGHIL----E 417
Query: 240 SFVSQLLNCIGARNSGITF------IFKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
++ + G R G F + + F+ + + + + + IF
Sbjct: 418 MLGGKVGSLEGRRVDGTPFQGEDEDELRESLIDRGFKSNGKEVMYSGITGEKIEAEIFVG 477
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 478 VIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 537
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ D+ + + Y KLL E
Sbjct: 538 ERLLDESDREDIYVCGQCGMSAVENVEQRRV---YCPNCDEETDVHEVEMSYAFKLLLDE 594
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 595 MK-ALGIAPRIELE 607
>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
Length = 1196
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 195/489 (39%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N +R+D+LL + YPQ+P+ I +++
Sbjct: 729 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 788
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
P ED+LV+N+ S++ C VFR Y A + + K
Sbjct: 789 YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSANLKSYSNGTK 846
Query: 108 SR------------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSI 141
R +D + G+ S G++ I K G+D +
Sbjct: 847 DRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVS-PGEVYINKETPDNALSSGITGSDAGL 905
Query: 142 KLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+K+ + + KV++S+ + V RQ+ +GDKFSS HGQ
Sbjct: 906 PVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQ 961
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV+G + + T ++LE GK G G Y TP
Sbjct: 962 KGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTP 1021
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E+ + + + G ++ K Y + P+ +
Sbjct: 1022 F----GGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLTY---------Y 1059
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1060 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1119
Query: 346 GNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + + + +C+ C S+ ++K +PY AKLL QEL FSM
Sbjct: 1120 QLLLERLMISSDRHEVDVCESCGFMGYSGWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSM 1178
Query: 400 GITLKFDTQ 408
+ + Q
Sbjct: 1179 NVVARLRLQ 1187
>gi|257386582|ref|YP_003176355.1| DNA-directed RNA polymerase subunit B' [Halomicrobium mukohataei
DSM 12286]
gi|242392248|dbj|BAH80361.1| RNA polymerase subunit B' [Halomicrobium mukohataei DSM 12286]
gi|257168889|gb|ACV46648.1| RNA polymerase Rpb2 domain 6 [Halomicrobium mukohataei DSM 12286]
Length = 608
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 203/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 133 LMFGIGAGMIPYPEHNASPRITMGSGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 185
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+ S+E + RS ++
Sbjct: 186 QLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVMNEGSVERALARSHFFRTY 245
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ + ++ + + +D L + K ++++GK +
Sbjct: 246 EGEERRYPGGQEDRFEIPDDEVRGARGEEAYTHLDEDGLVNPETNVKENEVLLGKTSPPR 305
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 361
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L Q EA + L +A P + G V+ +
Sbjct: 362 ELGDKFASRHGQKGVVGHLAPQEDMPFTEAGVVPDLI--LNPHALPSRMTVGHVL----E 415
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
++ G R G F + F+ + + + V + IF
Sbjct: 416 MLGGKVGALEGRRVDGTAFTGEDEAELRGALEDRGFKSSGKEVMYSGVTGEKVEAEIFVG 475
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
FYQ+ HM +K+ R+ G Q LT +P R R GG+ G M+ D LI HGA+ L
Sbjct: 476 TIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGHMERDVLIGHGAAMVLK 535
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR + YC C DI + +PY KLL E
Sbjct: 536 ERLLDESDREWIKICGECGMTAVENVEQRRI---YCPNCEEETDIHEVEMPYAFKLLLDE 592
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 593 MK-ALGIAPRIELE 605
>gi|284163647|ref|YP_003401926.1| DNA-directed RNA polymerase subunit B [Haloterrigena turkmenica DSM
5511]
gi|284013302|gb|ADB59253.1| DNA-directed RNA polymerase subunit B [Haloterrigena turkmenica DSM
5511]
Length = 609
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 130/496 (26%), Positives = 205/496 (41%), Gaps = 111/496 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + + G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFSIGAGMIPYPEHNASPRITMGAGMIKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGYDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYA- 133
E+ ++D++ +R D D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVR-GARGEDAYNHLDEDGLVNPETTVDENSVLLGKTSP 304
Query: 134 --------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVH 178
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 305 PRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----R 360
Query: 179 SACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQ 237
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 361 IPELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL--- 415
Query: 238 HQSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIF 287
+ +L + G R G F+ + F+ + + + + IF
Sbjct: 416 -EMIGGKLGSMEGRRVDGTPFLGEDEDELRDGLEDAGFDSAGKETMYSGVTGEKIEAEIF 474
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+
Sbjct: 475 VGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMT 534
Query: 348 LHERLK----------CKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
L ERL C N V NV QR V YC C+ DI + + Y KLL
Sbjct: 535 LKERLLDESDREFIHICANCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLL 591
Query: 393 QELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 592 DEMK-ALGIAPRLELE 606
>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Nasonia vitripennis]
Length = 1174
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 201/484 (41%), Gaps = 112/484 (23%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQ P+ +G TN ++R+DTL L+YP +P
Sbjct: 701 AMILGVCASIIPFPDHNQSPRN--TYQVNMF-PKVMGVYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 817
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ + +PS DD + I+ D+VIGK +
Sbjct: 818 ETKKFGDQEEQFEKPSRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGLMS------YATPFATSTGGVIT 235
KF+S HGQKG G E P +C+GL +A P + G +I
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPF----------SCEGLTPDIIINPHAIPSRMTIGHLI- 982
Query: 236 EQHQSFVSQLLNCIGAR---NSGITFIFKHYFLFCLFECPMDWIAFIC------LVRSLI 286
E Q VS IG N + + K L C + + + + + +
Sbjct: 983 ECIQGKVSANKGEIGDATPFNDAVN-VQKISTLLCEYGYQLRGNEIMYNGHTGRKINAQV 1041
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+HGA+
Sbjct: 1042 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQ 1101
Query: 347 NLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLL 391
L ERL C +AN+ C+ C + I + +PY AKLL
Sbjct: 1102 FLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQVRLPYAAKLL 1158
Query: 392 SQEL 395
QEL
Sbjct: 1159 FQEL 1162
>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
Length = 1176
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 820 ESKKIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETD 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G + G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYQLRGNEVMYNGHTGR----------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ---KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1152 KLPYAAKLLFQEL 1164
>gi|410955302|ref|XP_003984295.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Felis catus]
Length = 1079
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 129/471 (27%), Positives = 185/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G G + I K E +V + + SND G F
Sbjct: 749 QKLDDDGLPFIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKF 808
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 809 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTER 922
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 923 LYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 968
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 969 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP 1028
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1029 PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
Length = 1117
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 120/447 (26%), Positives = 193/447 (43%), Gaps = 100/447 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT L YPQ PL I +G RP
Sbjct: 672 QSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQGYNM 731
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSD 112
ED++++N+AS+E G+ RS +Y+AE D +I + +
Sbjct: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDE 791
Query: 113 DMLNFGKIQSKSGDIVIGKYAE--------IGA-------DHSIKLKHTERGLVLKVLLS 157
D L F + + + D++IG+ + +GA + S+ ++ +E+G+V KV+++
Sbjct: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSEKGIVDKVIIT 851
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 217
DG V++R + +GDKF+S HGQKGV+G + P + + D
Sbjct: 852 ETGDGTKLVKVTVRD----LRIPEIGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPD 905
Query: 218 GLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FK 261
+++ + P + G ++ ++ ++ G R G FI FK
Sbjct: 906 LIVNPHGIPSRMTVGQLL----EAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFK 961
Query: 262 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 321
H ++ D I + IF + +YQ+ HM DK+ R+ G Q LT +P
Sbjct: 962 HTGREIMY----DGITGKRF-EADIFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1016
Query: 322 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGPY 369
R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + Y
Sbjct: 1017 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVY 1076
Query: 370 CRICNSADDIIKANVPYGAKLLSQELS 396
C +C + I K + Y KLL EL
Sbjct: 1077 CPVCGEEERISKVEMSYAFKLLLDELK 1103
>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
Length = 1133
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 134/482 (27%), Positives = 199/482 (41%), Gaps = 129/482 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 674 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 733
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N++S++ G R E+ + KD
Sbjct: 734 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTKDA 793
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHT---- 146
Q +S D + G ++ +SG I I K + + ++ +
Sbjct: 794 LCGMRVDENGEAIWQHESLGPDGLGEVG-LKIRSGQIYINKSVPVQSSDAMAVNQAQYRE 852
Query: 147 --------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
E ++ +V++S++D+ ++ V +RQ+ LGDKFSS HGQKGV G
Sbjct: 853 TPVIYRAPELSIIDQVMMSTSDNDQDLIKVLLRQN----RRPELGDKFSSRHGQKGVCGI 908
Query: 199 LEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ Q T +++E GK G +G + Y T F G
Sbjct: 909 IVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFG---G 965
Query: 232 GVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ + + V Q N G SGIT EC +++ IF
Sbjct: 966 SKLEDMSKILVDQGFNYSGKDMLYSGITG-----------EC----------LQAYIFFG 1004
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L
Sbjct: 1005 PIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLL 1064
Query: 350 ERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 403
ERL + A + ++G +C C SA+ IIK +PY AKLL QEL +M I
Sbjct: 1065 ERLMISSDAFEVDVCSNCGLMGYSGWCSTCKSAEHIIKMTIPYAAKLLFQEL-LAMNIAP 1123
Query: 404 KF 405
+
Sbjct: 1124 RL 1125
>gi|410955304|ref|XP_003984296.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Felis catus]
Length = 1070
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 129/471 (27%), Positives = 185/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 621 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G G + I K E +V + + SND G F
Sbjct: 740 QKLDDDGLPFIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKF 799
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 800 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPS 857
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 858 RMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTER 913
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 914 LYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 959
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 960 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP 1019
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1020 PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|308161806|gb|EFO64240.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia P15]
Length = 1239
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 137/506 (27%), Positives = 201/506 (39%), Gaps = 126/506 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + K + AI F N R +T + L YPQRPL
Sbjct: 760 LLGYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAF---NQLERFETAMFLLDYPQRPLT 816
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYK-- 96
I G ED+L++N+ +++ C ++RS S +
Sbjct: 817 STKILKLTGYERLPAGQNATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSISTELN 876
Query: 97 ----AEVDN-KDIQVKSRPSDDMLNFGKIQS-------------KSGDIVIGKYAEI--- 135
VD KDI + P D + + + K+GDIVI K I
Sbjct: 877 SIGSKSVDGIKDILLGP-PKDHLKQYEGYHAIEDDGLCAVGAHLKTGDIVINKGRHITNI 935
Query: 136 -----GADHSIKLKHTERGL---------VLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
G + ++ L + L + KVL+++N DG V R+
Sbjct: 936 PGLSDGTEATVSLIKSPESLKSPLETTTYIDKVLVTTNGDGNMLIKVLTREP----RRPE 991
Query: 182 LGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGA 215
+GDKFSS HGQKGV G + T A+LLE K
Sbjct: 992 VGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSG 1051
Query: 216 C-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
C G + T F T T ++F+++L + + R +G ++ K L D
Sbjct: 1052 CFRGEQTDGTCFRTKT-------DETFLAELYDSL--RVAGFSYSGKDVLYSGLTG---D 1099
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
I IF +YQ+ HM +DK+ R TG LT +P R+ GG+ GEM
Sbjct: 1100 VIPV------YIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEM 1153
Query: 335 KCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKANV 384
+ DC I++GAS L ER C+ G +C C S D++K +
Sbjct: 1154 ERDCAISYGASALLLERFMLSSDDFLAYVCETCGLFSYEKNGALWCPTCQSGKDVVKIRI 1213
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKL+ QEL SMG+ ++ + S
Sbjct: 1214 PYAAKLMIQEL-ISMGVLVRMQLEDS 1238
>gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gibberella zeae PH-1]
Length = 1157
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 191/465 (41%), Gaps = 111/465 (23%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP-------------------- 74
QAIG N R+DTLL L YPQRP+ +G
Sbjct: 710 QAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDI 769
Query: 75 EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVKSRPSD-DMLNFGKIQSK----- 123
ED+LV+N+AS++ C VFR Y E+ + R D +M GK + +
Sbjct: 770 EDALVLNKASVDRGFGRCQVFRK--YTTELQKYPNGRRERIGDPEMEGEGKSKRRITKHE 827
Query: 124 ---------------SGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLK 153
SG+ ++ K + D S+ + + + K
Sbjct: 828 ALDDDGLAIVGYKVHSGEAMVKKETPLDQTSTGIGLDRGPGEFRDSSVSYRIADPAYIDK 887
Query: 154 VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALG 212
V++S + V RQ+ LGDKFSS HGQKGV+G + EQ ++ L
Sbjct: 888 VMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGL- 942
Query: 213 KGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 271
+ D +M+ + P + G +LL C+ + S I + F
Sbjct: 943 --SPDIIMNPHGFPSRMTVG------------KLLECLTGKASIIHGRPDYGFGDAFRSH 988
Query: 272 PMDWIAFICL--------------------VRSLIFTWITFYQQFIHMSEDKVKFRNTGS 311
P++ ++ + + + + +F +YQ+ HM +DK+ R+ G
Sbjct: 989 PLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQDKMHSRSRGP 1048
Query: 312 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ-----RVVG 366
LT +P R R GG+ GEM+ DCLIA+GAS L ERL + I + G
Sbjct: 1049 RAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEIDICQQCGLFG 1108
Query: 367 -GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 409
YC C S ++ K +PY AKLL QEL S ++G+ L+ D +
Sbjct: 1109 YKGYCHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQMDDEF 1153
>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
Length = 1104
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 181/435 (41%), Gaps = 112/435 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 653 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 709
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 710 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 769
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 770 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 829
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 830 DELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 885
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 886 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 945
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 946 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 987
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 988 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1044
Query: 338 CLIAHGASGNLHERL 352
C IAHGA+ L ERL
Sbjct: 1045 CQIAHGAAQFLRERL 1059
>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
Length = 1175
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 129/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS +++ D
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDA 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTIMLPETE 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C IAHGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 RLPYAAKLLFQEL 1163
>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
Length = 1179
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 178/427 (41%), Gaps = 117/427 (27%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN IR+DT+ L+YPQ
Sbjct: 773 SMILGICASIIPFPDHNQSPRN----TYQSAM-GKQAMGIYLTNYQIRMDTMANILYYPQ 827
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y++ +
Sbjct: 828 KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYM 887
Query: 100 D------------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGA 137
D + +++K D + G I +G DI+IGK A + A
Sbjct: 888 DIEKKAGVLNLEEFEKPTRDTTLRMKHGTYDKLEADGFIAPGTGVTGEDIIIGKTAPLQA 947
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S LK TE G+V +VL+++N +G F V +R +
Sbjct: 948 DSEELGQRTRSHTKRDVSTPLKSTENGIVDQVLITTNHEGHKFVKVRVRST----RVPQT 1003
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G E P L+E L K A
Sbjct: 1004 GDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVAT 1063
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF TE VSQLL G ++ G+ ++ + L
Sbjct: 1064 LLGNEGDATPF--------TELTVDSVSQLLQQKGYQSRGLEVMYHGHTGKKL------- 1108
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1109 -------QAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEME 1161
Query: 336 CDCLIAH 342
+A
Sbjct: 1162 VRLRLAQ 1168
>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
Length = 1202
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 125/447 (27%), Positives = 184/447 (41%), Gaps = 95/447 (21%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QA+G TN + R+D L YP RPL + D +
Sbjct: 764 QALGMYVTNYDNRMDKTAYVLSYPMRPLVDTRLMDIIKLNTIPSGEQVIVAIMSHSGYNQ 823
Query: 75 EDSLVMNQASLECGVFRSESYKAEVD-------NKDIQVKSRPSD----DMLNFGKIQSK 123
EDS++ N+ S++ G+F + Y E D N++++ K + N+ KI S+
Sbjct: 824 EDSVLFNKGSIDRGLFLATIYHTEKDEDKKLYGNEEMRCKPDKTKTKNMKFANYDKINSQ 883
Query: 124 ----------SGDIVIGKYAEIGA---DHSIKLKHT---------ERGLVLKVLLSSNDD 161
DI+I K I D++ +K+T E + K SN D
Sbjct: 884 GLVPENTLVEDRDIIIAKVLPIKENKNDYTKTIKYTDESHVHRTGEETFIDKNYSESNGD 943
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS 221
G NF V +R V +GDKFSS HGQKG +G ++E DGL
Sbjct: 944 GYNFCKVRLRS----VRRPVIGDKFSSRHGQKGTIG-------NIIEEKDMPFTADGLKP 992
Query: 222 --YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-IFK-----HYFLFCLFECPM 273
P A + I + ++ + ++L +G G +F FK +E
Sbjct: 993 DIIINPHAIPSRMTIAQLKETLLGKVLIQMGLYGDGTSFSKFKIGDIASELQKLGYESNG 1052
Query: 274 DWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
+ + + L + S IF FYQ+ HM DK R+ G LT +P R R GG+
Sbjct: 1053 NEVMYNALTGEQMPSSIFIGPAFYQRLKHMVNDKQHSRSIGPMVNLTRQPAEGRARDGGL 1112
Query: 330 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICN 374
FGEM+ DC+I+HGAS RL KC +A N Q++ C C
Sbjct: 1113 RFGEMERDCMISHGASRFTKGRLYDASDAYSVHVCNKCGLIASYNKAQQI---HICNTCE 1169
Query: 375 SADDIIKANVPYGAKLLSQELSFSMGI 401
+ D +PY KL+ QEL ++M I
Sbjct: 1170 NRTDFRYVEIPYSCKLMFQEL-YTMNI 1195
>gi|448297908|ref|ZP_21487942.1| DNA-directed RNA polymerase subunit B' [Natronorubrum tibetense
GA33]
gi|242392396|dbj|BAH80411.1| RNA polymerase subunit B' [Natronorubrum tibetense]
gi|445592634|gb|ELY46820.1| DNA-directed RNA polymerase subunit B' [Natronorubrum tibetense
GA33]
Length = 609
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 129/493 (26%), Positives = 202/493 (40%), Gaps = 109/493 (22%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S + G+ G+IP H + +TM ++ QS +G P+ N IR DT L Y
Sbjct: 133 SLIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHY 185
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA 97
PQ + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 186 PQLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245
Query: 98 ----------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
E+ ++D+ + + +D L + +++GK +
Sbjct: 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETTVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G L Q E + L +A P + G ++
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL---- 415
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ +L G R G F+ + F + + + + IF
Sbjct: 416 EMIGGKLGAMEGRRVDGTPFLGEDEDELRGGLEDAGFNSAGKETMYSGVTGEKIEAEIFV 475
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 476 GIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTL 535
Query: 349 HERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL +C V NV QR V YC C+ DI + + Y KLL
Sbjct: 536 KERLLDESDREFIHICGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLD 592
Query: 394 ELSFSMGITLKFD 406
E+ ++GI + +
Sbjct: 593 EMK-ALGIAPRLE 604
>gi|397779347|ref|YP_006543820.1| DNA-directed RNA polymerase subunit B' [Methanoculleus bourgensis
MS2]
gi|396937849|emb|CCJ35104.1| DNA-directed RNA polymerase subunit B' [Methanoculleus bourgensis
MS2]
Length = 604
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 186/448 (41%), Gaps = 85/448 (18%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
QA+GF N +R DT L Y Q+PL + SD +G RP
Sbjct: 159 QALGFGAANMKLRPDTRGHMLHYVQKPLTYTQTSDAIGSDERPAGQNFVVAILSYEGFNI 218
Query: 75 EDSLVMNQASLECGVFRSESYK-----------AEVDNKDI-----------QVKSRPSD 112
ED+L++N+AS++ G+ RS ++ +VD +I + + D
Sbjct: 219 EDALIINKASIDRGLGRSHFFRTYDGEERRYPGGQVDRIEIPDEEVSGAHGAEYYANLDD 278
Query: 113 DMLNFGKIQSKSGDIVIGKYA---------------EIGADHSIKLKHTERGLVLKVLLS 157
D + + D++IGK + E D S+ ++ ERG+V V+++
Sbjct: 279 DGIINPETVVHEKDVLIGKTSPPRFLEEPTSELIAVEKRRDTSVTMRSNERGIVDTVIIT 338
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 217
++ V R + +GDKF+S HGQKGV+G + Q A + G
Sbjct: 339 EGENSSRLVKVRTRD----LRVPEVGDKFASRHGQKGVIGLI-QPSADMPFTESGMTPDL 393
Query: 218 GLMSYATPFATSTGGVIT---EQHQSFVSQLLNCI---GARNSGITFIFKHY-FLFCLFE 270
+ +A P + G ++ + S + +N G R + + K F E
Sbjct: 394 IINPHAVPSRMTIGHMLEMLGGKVGSLEGRRINATAFRGEREADLRRSLKELGFSHDGRE 453
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
D I + I+ + +YQ+ HM K+ R+ G Q LT +P R R GG+
Sbjct: 454 VMYDGITGRRFA-ADIYIGVIYYQKLYHMVSSKMHARSRGPVQVLTRQPTEGRAREGGLR 512
Query: 331 FGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSAD 377
FGEM+ D +I HGA+ L ERL KC VA ++ R C C S
Sbjct: 513 FGEMERDVMIGHGAAMALKERLLDESDKVTQWVCAKCGMVA-MLDRKRKITRCLACGSET 571
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKF 405
DI + Y KLL E+ SMGI +
Sbjct: 572 DIYPVEMSYAFKLLLDEMK-SMGIAPRL 598
>gi|448316022|ref|ZP_21505660.1| DNA-directed RNA polymerase subunit B' [Natronococcus jeotgali DSM
18795]
gi|242392382|dbj|BAH80404.1| RNA polymerase subunit B' [Natronococcus jeotgali]
gi|445610368|gb|ELY64142.1| DNA-directed RNA polymerase subunit B' [Natronococcus jeotgali DSM
18795]
Length = 609
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 203/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYTHLDEDGLVNPETRVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L Q E + L +A P + G ++ +
Sbjct: 363 ELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----E 416
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
+L G R G F+ + F + + + + IF
Sbjct: 417 MIGGKLGAMEGRRVDGTPFLGEDEDELREGLERNGFNSAGKETMYSGVSGEKIEAEIFVG 476
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
I FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 477 IIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLK 536
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR V YC C+ DI + + Y KLL E
Sbjct: 537 ERLLDESDREFIHVCGQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDE 593
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 594 MK-ALGIAPRLELE 606
>gi|451845872|gb|EMD59183.1| hypothetical protein COCSADRAFT_175739 [Cochliobolus sativus ND90Pr]
Length = 1215
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 131/483 (27%), Positives = 196/483 (40%), Gaps = 127/483 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I ++
Sbjct: 760 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 819
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
P ED+L++N+AS + G R + +K V ++ + +
Sbjct: 820 YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHV--TPLKTYANNTS 877
Query: 113 DMLNFGKIQ-SKSGDIVIGK--YAEIGA--------------------------DHSIKL 143
D +N G + + S IG+ A++GA D +
Sbjct: 878 DRINAGALDVANSNHQAIGQDGIAQVGARLEAGDAFLLKSIPQDTAGPASNLYKDKPERY 937
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 201
K + + K ++ N+ G + +RQ+ LGDKFSS HGQKG G + Q
Sbjct: 938 KLPDCSYIDKACITENESGTTLIKLLMRQT----RRPELGDKFSSRHGQKGTTGLIVQQE 993
Query: 202 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 236
T +++E GK G +G + Y T F ST + +
Sbjct: 994 DMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGST---VED 1050
Query: 237 QHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 294
Q V + + G SGIT ++ F F I +YQ
Sbjct: 1051 MSQILVEKGFSYTGKDYLTSGITGEAHQFYTF--------------------FGPI-YYQ 1089
Query: 295 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 354
+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1090 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMI 1149
Query: 355 KNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 406
+ A+ + Q G YC++C S I K +PY AKLL QEL S ++ +T+ +
Sbjct: 1150 SSDAHNVDVCEKCGQMGYSG-YCKLCESEKAIRKITMPYAAKLLIQELGSMNVKVTIGLE 1208
Query: 407 TQL 409
+
Sbjct: 1209 DEF 1211
>gi|410610287|gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
jasminodora]
Length = 569
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 166/412 (40%), Gaps = 111/412 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 187 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 243
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 244 LVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 303
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK + I D
Sbjct: 304 EKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDE 363
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 364 SQGQATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 419
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 420 SSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGK 479
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 480 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 520
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ F
Sbjct: 521 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 569
>gi|410610281|gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
laxiflora]
Length = 569
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 165/412 (40%), Gaps = 111/412 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 187 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQYRMDTLAYVLYYPQKP 243
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 244 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 303
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK + I D
Sbjct: 304 EKKMGTLVKEDFGRPDRADTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPITQDD 363
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 364 NQGQASRYTRQDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 419
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 420 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 479
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 480 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRLT---------- 521
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
SLIF T+YQ+ HM +DK+ R G Q LT +P R R GG+ F
Sbjct: 522 ----SLIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 569
>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
Length = 1214
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 199/473 (42%), Gaps = 132/473 (27%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLF------WILISD------CLG--------RP 74
QA+G +TN NIR DTL+ L YPQ+PL +I +++ C+
Sbjct: 765 QAMGLNSTNFNIRFDTLVHILHYPQKPLASSRAVDFITVNEVPIGINCVTSIACFTGYNQ 824
Query: 75 EDSLVMNQASLECGVFRSESYKA--EVDNKD----IQVK-SRPSDDMLNF-GKI------ 120
EDS+++NQ +++ G FRS Y+ E ++KD + K ++P D NF GK+
Sbjct: 825 EDSIIINQYAIDRGFFRSVFYRTYKESEDKDPDNFTETKITKPIGD--NFAGKLFIKLDS 882
Query: 121 --------QSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSN 159
+ + +IGK I + S+ + ERG+V VL+S N
Sbjct: 883 DGIVPPGTKVDEEEPIIGKELIIDNIMLNTANGQKNTKECSLLTRRAERGVVDSVLISEN 942
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------- 199
G V +R + +GDKF S HGQKG G
Sbjct: 943 QKGYKLVKVKVRS----LRIPQIGDKFCSRHGQKGTCGMTYRQEDLPYTLVGISPDLTIN 998
Query: 200 ------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
T L+E K + G + ATPFA I + L+ +G +
Sbjct: 999 PHCIPSRMTIGHLIECLSSKLASIKGQFNDATPFAQILVNDIANE--------LHKVGWQ 1050
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G + + + +F P IF T+YQ+ H+ +DK+ R+ G
Sbjct: 1051 KWG-NEVMTNPYTGNMFSIP-------------IFVGPTYYQRLRHLVDDKMYARSRGPV 1096
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--NV 357
+T +P R R GG+ FGEM+ DC+I+HG + L ER KC V
Sbjct: 1097 TGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERTYDVSDAFRVHVCSKCGMFAV 1156
Query: 358 ANVIQRVVGGPYCRIC---NSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 406
AN+ + YC +C N+ + I + +PY AK L QEL S ++ LKFD
Sbjct: 1157 ANLENQEF---YCNLCKNQNNQNKIYQVQMPYAAKTLIQELISMNIAPRLKFD 1206
>gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum
majus]
Length = 575
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 164/412 (39%), Gaps = 111/412 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 193 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 249
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 250 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 309
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 310 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDD 369
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 370 AQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 425
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 426 SSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 485
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 486 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 526
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ F
Sbjct: 527 ---SSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575
>gi|242392386|dbj|BAH80406.1| RNA polymerase subunit B' [Natronolimnobius baerhuensis]
Length = 609
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 202/512 (39%), Gaps = 145/512 (28%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ ++D+ + + +D L + + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYNHLDEDGLVNPETRVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
LGDKF+S HGQKGV+G L E P +LE GK
Sbjct: 363 ELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLVLNPHALPSRMTVGHILEMIGGKL 422
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFEC 271
GA +G TPF G E N G SG+T
Sbjct: 423 GAMEGRRVDGTPF---LGEDEDELRDGLEDNGFNSAGKETMYSGVTG------------- 466
Query: 272 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ + IF I FYQ+ HM +K+ R+ G Q LT +P R R GG+
Sbjct: 467 --------EKIEAEIFVGIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRI 518
Query: 332 GEMKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSA 376
GEM+ D I HGA+ L ERL +C V NV QR V YC C+
Sbjct: 519 GEMERDVFIGHGAAMTLKERLLDESDREYINICAQCGMSAVENVEQRRV---YCPNCDEE 575
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
DI + + Y KLL E+ ++GI + + +
Sbjct: 576 TDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1151
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 129/489 (26%), Positives = 196/489 (40%), Gaps = 127/489 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + K + AIG+ N R+DTLL + YPQ+P+
Sbjct: 679 ILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGY---NQFRRIDTLLYVMVYPQQPMV 735
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYKAEV---- 99
+ + ED+ ++N+ASL+ G R + Y+ V
Sbjct: 736 KTRTIELINYDKLPAGQNATVAVMSYSGYDIEDASMINRASLDRGYGRCQVYRKNVTLIR 795
Query: 100 -----------DNKDIQVKSRP--------SDDMLNFGKIQSKSGDIVIGKYAEIGADHS 140
D +V RP +D + G+ Q + GD+ I K + A+ +
Sbjct: 796 KYPNGTFDRLADAPIDEVTGRPPDKYSALQADGIAGVGE-QLRPGDVYINKQSPANANDN 854
Query: 141 --------------IKLKHTER-------GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++ K+T G+V KV+L+ ++ + V IRQ+
Sbjct: 855 SFNANVLDSTSTSLVQYKNTPMTYRSPVGGIVDKVMLTETENDQTLVKVLIRQT----RR 910
Query: 180 ACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK 213
LGDKFSS HGQKGV G + T +++E GK
Sbjct: 911 PELGDKFSSRHGQKGVCGLIINEEDMPFNDQGIKPDVIFNPHGMPSRMTVGKMIELLAGK 970
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
G G + Y T F G + + Q + + N G K Y L P
Sbjct: 971 AGVLKGKLQYGTAFG---GSKVEDMSQILIEKGFNYAG----------KDYLTSGLTGEP 1017
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
M+ + ++ +YQ+ HM DK+ R G LT +P R R GG+ G
Sbjct: 1018 ME---------AYVYFGPIYYQKLKHMVMDKMHSRARGPRAVLTRQPTEGRSRDGGLRLG 1068
Query: 333 EMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPY 386
EM+ DCLI +GA+ L ERL + A N Q ++G +C +C S+ + K +PY
Sbjct: 1069 EMERDCLIGYGATQLLLERLMISSDAFEINACQECGLLGYNGWCPLCKSSKRVAKLTIPY 1128
Query: 387 GAKLLSQEL 395
AKLL QEL
Sbjct: 1129 AAKLLFQEL 1137
>gi|258596921|ref|XP_001349662.2| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
gi|254688481|gb|AAC71932.3| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
Length = 1340
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 139/310 (44%), Gaps = 72/310 (23%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1056 DCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1111
Query: 198 FLEQTP--------------------------AQLLEAALGK-GACDGLMSYATPFATST 230
+T L+E GK A +G ATPF+
Sbjct: 1112 ITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSK-- 1169
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
IT Q +SQ L+ +G G ++ + L +S IF
Sbjct: 1170 ---ITVQE---ISQKLHNLGYEKYGNEMLYNGHNGRML--------------KSKIFIGP 1209
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1210 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1269
Query: 351 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1270 RLFEESDAYRVHVCDNCGLCCIADINKNAYE---CTVCNSKTNISQIYLPYACKLLFQEL 1326
Query: 396 SFSMGITLKF 405
+M I K
Sbjct: 1327 -MTMAIYPKL 1335
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN NIR+DTL L+YPQ+P
Sbjct: 721 SLILGVCASIIPFSDHNQSPRN--TYQSA-MGKQAMGIYVTNFNIRLDTLAHLLYYPQKP 777
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA 97
L + + L EDSL+MNQ+S++ G+FRS Y+
Sbjct: 778 LVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRT 833
>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
206040]
Length = 1157
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 200/499 (40%), Gaps = 120/499 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 LLGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAHNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYK-- 96
+++S ED+LV+N+AS++ C VFR + +
Sbjct: 739 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 798
Query: 97 --------------AEVDN---KDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG--- 136
EV+N + I+ D L + SG+ ++ K +
Sbjct: 799 KYPNGRRERVGDPVNEVENGVMRRIKKHEALDADGLAIVGQRIHSGEAMVKKETPLDMTT 858
Query: 137 ------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D ++ + + + KV++S + V RQ+ LGD
Sbjct: 859 TGIGLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGD 914
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGA-CD 217
KFSS HGQKGV+G + T +LLE GK +
Sbjct: 915 KFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVH 974
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G Y G VS++L ++G ++ K YF + P++
Sbjct: 975 GRKDYGF------GDAFRSHPVQQVSEVLV-----DNGFSWEGKDYFTSGITGEPLE--- 1020
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ D
Sbjct: 1021 ------AYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERD 1074
Query: 338 CLIAHGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLL 391
CLIA+GAS L ERL + +I + G YC C S D+ K +PY AKLL
Sbjct: 1075 CLIAYGASQLLLERLMLSSDGTMIDICQQCGLFGYKGYCSTCKSTRDVTKMQMPYAAKLL 1134
Query: 392 SQEL-SFSMGITLKFDTQL 409
QEL S ++G+ L+ + +
Sbjct: 1135 VQELISMNVGVRLQLEDEF 1153
>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 1140
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 189/482 (39%), Gaps = 135/482 (28%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G V Y SP QA+G N ++R DT L L YPQ+P+ D +G
Sbjct: 671 GLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIG 730
Query: 73 RP--------------------EDSLVMNQASLECGVFR---SESYKAEVDNKDI----Q 105
ED+L+MN+AS++ G R + Y + I +
Sbjct: 731 YDNLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEE 790
Query: 106 VKSRP----------------------------SDDMLNFGKIQSKSGDIVIGKYAEIG- 136
+++ P +D L F Q G I+I K + +
Sbjct: 791 LRAPPVVGGGGKGGGRHQRQGGFVGRAKKYAIIDEDGLPFSGEQVVDGGILINKVSPMSD 850
Query: 137 ---------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
D I K+ V +V+ + N+D RQ+ LGDKFS
Sbjct: 851 AATGQVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQT----RRPELGDKFS 906
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV+G + T +LLE GK G DG
Sbjct: 907 SRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKAGVLDGER 966
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
SY T F G T++H ++Q L G S +I L EC
Sbjct: 967 SYGTAF-----GGTTKEH---MTQSLIRHGFHPSAKEYITSGVTGEAL-EC--------- 1008
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
IF +YQ+ HM DK+ R+TG LT +P R + GG+ GEM+ DCL+
Sbjct: 1009 ----YIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEMERDCLV 1064
Query: 341 AHGASGNLHERLKCKN---VANVIQRVVGGPY----CRICNSADDIIKANVPYGAKLLSQ 393
A+GAS L ERL + A+V +R Y C++C ++++I+ +PY KLL Q
Sbjct: 1065 AYGASNLLLERLMLSSDVFTASVCRRCGLLSYQNGTCKLCGTSENIVDIRMPYACKLLFQ 1124
Query: 394 EL 395
EL
Sbjct: 1125 EL 1126
>gi|341830391|gb|AEK93550.1| RNA polymerase subunit B' [Halomicrobium katesii]
Length = 608
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 127/494 (25%), Positives = 205/494 (41%), Gaps = 109/494 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 133 LMFGIGAGMIPYPEHNASPRITMGSGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 185
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+ S+E + RS ++
Sbjct: 186 QLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVMNEGSVERALARSHFFRTY 245
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
EV + ++ + + +D L + K ++++GK +
Sbjct: 246 EGEERRYPGGQEDRFEVPDDEVRGARGEEAYTHLDEDGLVNPETNVKENEVLLGKTSPPR 305
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 361
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
LGDKF+S HGQKGV+G L P + + D +++ +A P + G V+ +
Sbjct: 362 ELGDKFASRHGQKGVVGHL--APQEDMPFTEDGVVPDLILNPHALPSRMTVGHVL----E 415
Query: 240 SFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTW 289
++ G R G F + F+ + + + V + IF
Sbjct: 416 MLGGKVGALEGRRVDGTAFTGEDEAELRGALEDRGFKSSGKEVMYSGVTGEKVEAEIFVG 475
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
FYQ+ HM +K+ R+ G Q LT +P R R GG+ G M+ D LI HGA+ L
Sbjct: 476 TIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGHMERDVLIGHGAAMVLK 535
Query: 350 ERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
ERL +C V NV QR + YC C DI + +PY KLL E
Sbjct: 536 ERLLDESDREWIKICGECGMAAVENVEQRRI---YCPNCEEETDIHEVEMPYAFKLLLDE 592
Query: 395 LSFSMGITLKFDTQ 408
+ ++GI + + +
Sbjct: 593 MK-ALGIAPRIELE 605
>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1212
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 125/484 (25%), Positives = 199/484 (41%), Gaps = 128/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG +N +R+D+LL + YPQ+P+ + +
Sbjct: 744 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTRTIELIK 803
Query: 73 RP--------------------EDSLVMNQASLE-----CGVFRS-----ESYK------ 96
ED+LV+N+ S++ C VFR +SY
Sbjct: 804 YDHLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYPNGSEDR 863
Query: 97 ---AEVDNKDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKYAEIGA------------- 137
E+ ++ + SD + G++ S+ G + I K A
Sbjct: 864 LRGPEIGENNVPIAKHALLDSDGLAAVGEVVSQ-GQVYINKEVPAAAFSAGITGSDAGRP 922
Query: 138 -DHS---IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
D++ + K + + KV++S + V RQ+ +GDKFSS HGQK
Sbjct: 923 TDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQT----RRPEVGDKFSSRHGQK 978
Query: 194 GVLGFLEQ--------------------------TPAQLLEAALGKGACDGLMSYATPFA 227
GV+G + + T +LLE GK G++S +
Sbjct: 979 GVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKLLELVAGKA---GVLSGQHGYG 1035
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
T+ GG E+ + + + G ++ K Y + P+ + +F
Sbjct: 1036 TAFGGSPVEEMSAILV---------DKGFSYGGKDYLTSGITGDPLPF---------YVF 1077
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R+TG LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1078 TGPIYYQKLKHMVQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1137
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL K+ ++ ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1138 LLERLMLSSDKHEVDICEKCGFMGYQNWCQRCRSSRGVVKMTIPYAAKLLIQEL-LSMNV 1196
Query: 402 TLKF 405
T +
Sbjct: 1197 TARL 1200
>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
Length = 1173
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 129/493 (26%), Positives = 200/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 700 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 756
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS +++ D
Sbjct: 757 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDA 816
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEI---- 135
+ ++ +P+ DD + I+ D+VIGK +
Sbjct: 817 ESKRIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLHETD 876
Query: 136 -----------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 877 DELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 932
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 933 KFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 992
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 993 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK---------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ----INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1091
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1092 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQI 1148
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1149 RLPYAAKLLFQEL 1161
>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
Length = 1176
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 127/492 (25%), Positives = 202/492 (41%), Gaps = 128/492 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS +++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ DD + ++ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPNRSTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEND 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DELEGTTKRYSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KF+S HGQKG G E P L+E GK + +
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKVSSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL G + G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTLLQEYGYQLRGNEVMYNGHSGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKAN 383
C I+HGA+ L ERL C +A I + + C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHVCNYCGLIA--IANLRNNTFECKGCKNKTQISQVR 1151
Query: 384 VPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1152 LPYAAKLLFQEL 1163
>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida albicans
WO-1]
Length = 1157
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 203/504 (40%), Gaps = 135/504 (26%)
Query: 10 GIIPSHLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQ 53
G I +HL+ + G + Y SP QAIG N R+DTLL
Sbjct: 675 GAIVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLY 734
Query: 54 QLFYPQRPLFWILISDCLGRP--------------------EDSLVMNQASLE-----CG 88
+ YPQ+P+ + + ED+LV+N+ASL+ C
Sbjct: 735 FMVYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQ 794
Query: 89 VFRSES----------------YKAEVDNKDI------------QVKSRPSDDMLNFGK- 119
V R + + + +NK I +V SR + + K
Sbjct: 795 VVRKNTVQLKKYPNHTQDILAGMRVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKC 854
Query: 120 IQSKSGDIVIGKYAEIGADHSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 174
+ + SGD +G E A S + K E + +V++S +D+ + V +RQ+
Sbjct: 855 VPTNSGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQT- 913
Query: 175 NMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLE 208
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 914 ---RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIE 970
Query: 209 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 267
GK G +G + Y T F GG E +S++L G SG ++ C
Sbjct: 971 LISGKAGVLNGSLEYGTCF----GGSKLED----MSKILIEKGFSYSGKDMLYSGITGEC 1022
Query: 268 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 327
L ++ IF +YQ+ HM DK+ R G LT +P R R G
Sbjct: 1023 L--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 1068
Query: 328 GIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIK 381
G+ GEM+ DC+IA+GAS L ERL +V N + +C C S++++IK
Sbjct: 1069 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSSENVIK 1128
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1129 MTIPYAAKLLFQEL-LSMNIAPRL 1151
>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
Length = 1203
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 133/471 (28%), Positives = 198/471 (42%), Gaps = 128/471 (27%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLF------WILISD------CLG--------RP 74
QA+G +TN NIR DTL+ L YPQ+PL +I +++ C+
Sbjct: 754 QAMGLNSTNFNIRFDTLVHILHYPQKPLASSKAVDFITVNEVPIGINCVTSIACFTGYNQ 813
Query: 75 EDSLVMNQASLECGVFRSESYKA--EVDNKD----IQVK-SRPSDDMLN---FGKIQSK- 123
EDS+++NQ +++ G FRS Y+ E ++KD + K ++P D F K+ S
Sbjct: 814 EDSIIINQYAIDRGFFRSVFYRTYKESEDKDPDNFTETKITKPLGDNYAGKLFIKLDSDG 873
Query: 124 ---------SGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDD 161
+ +IGK I + S+ + ERG+V VL+S N
Sbjct: 874 IVPPGTKVDEEEPIIGKELIIDNIMLNTANGQKNTKECSLLTRRAERGVVDSVLISENQK 933
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---------------------- 199
G V +R + +GDKF S HGQKG G
Sbjct: 934 GYKLVKVKVRS----LRIPQIGDKFCSRHGQKGTCGMTYRQEDLPFTLVGISPDLTINPH 989
Query: 200 ----EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 254
T L+E K + G + ATPFA + I + L+ +G +
Sbjct: 990 CIPSRMTIGHLIECLSSKLASIKGQFNDATPFAQISVNDIANK--------LHEVGWQKW 1041
Query: 255 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 314
G + + + +F+ P IF T+YQ+ H+ +DK+ R+ G
Sbjct: 1042 G-NEVMTNPYSGNMFQIP-------------IFVGPTYYQRLRHLVDDKMYARSRGPVTG 1087
Query: 315 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--NVAN 359
+T +P R R GG+ FGEM+ DC+I+HG + L ER KC VAN
Sbjct: 1088 ITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERTYDVSDAFRVHVCSKCGLFAVAN 1147
Query: 360 VIQRVVGGPYCRIC---NSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 406
+ + YC IC N + I + +PY AK L QEL S ++ LKFD
Sbjct: 1148 LENQEF---YCNICKNTNQQNQIYQVLMPYAAKTLIQELISMNIAPRLKFD 1195
>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
Length = 1142
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/473 (26%), Positives = 198/473 (41%), Gaps = 103/473 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYITNFHVRMDTLAHVLYYPHKP 757
Query: 62 L--------------------FWILISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDN 101
L ++S EDS+++N ++++ G FRS Y++ D+
Sbjct: 758 LTTTRSMEYLRFRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDS 817
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ +V +P+ DD + + D++IGK +
Sbjct: 818 ECKRVGDQEEQFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPEND 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 878 DDLESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQ 244
KF+S HGQKG G + A DGL T +I H
Sbjct: 934 KFASRHGQKGTCGITYRQEDMPFTA-------DGL----------TPDIIINPH------ 970
Query: 245 LLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKV 304
I +R + I+ + + Y M V + IF T+YQ+ HM +DK+
Sbjct: 971 ---AIPSRMTKISNLLQEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKI 1027
Query: 305 KFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVA 358
R G Q L +P+ R R GG+ FGEM+ DC I+HGA+ L ERL ++
Sbjct: 1028 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHIC 1087
Query: 359 NV-----IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
N+ I + + C+ C + I + +PY KLL QEL SM I +
Sbjct: 1088 NLCGLLAIANLRNNTFECKGCRNKTQISQIRLPYACKLLFQEL-MSMSIAPRM 1139
>gi|83415453|gb|ABC17934.1| RNA polymerase II second largest subunit precursor, partial
[Batrachochytrium dendrobatidis]
Length = 1202
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 171/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ +YQS QA+G TN +R+DT+ LFYPQ
Sbjct: 818 SMILGICASIIPFPDHNQSPRS----VYQSAM-GKQAMGLFLTNFQLRMDTMSNILFYPQ 872
Query: 60 RPLFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL ++ C EDSL+MNQ+S++ G+FRS Y+ +
Sbjct: 873 KPLATTRAMEFMHFRDLPAGINAVVAIACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYM 932
Query: 100 DNK------DIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
D + + +PS DD L ++ DI+IGK I A
Sbjct: 933 DQEKKVGMISTETLEKPSRDTTLRLKHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAA 992
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S LK TE G+V +VL+++N DG F V +R S+ + H +
Sbjct: 993 DSTELGQRTTMHTKRDASTPLKSTENGIVDQVLITTNQDGFKFVKVRVR-SIRIPH---M 1048
Query: 183 GDKFSSMHGQKGVLGFLEQTP--------------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G +T L+E L K +
Sbjct: 1049 GDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIINPHAIPSRMTIGHLVECLLSKVST 1108
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T I SQ L G + G ++ + L
Sbjct: 1109 FTGDEGDATPFTDVTVEAI--------SQALQGYGYQRRGFEVLYNGHTGRKL------- 1153
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ ++T T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 1154 -------NAQVYTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 1202
>gi|336476452|ref|YP_004615593.1| DNA-directed RNA polymerase subunit B [Methanosalsum zhilinae DSM
4017]
gi|335929833|gb|AEH60374.1| DNA-directed RNA polymerase subunit B [Methanosalsum zhilinae DSM
4017]
Length = 604
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 125/486 (25%), Positives = 200/486 (41%), Gaps = 98/486 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G++P + + + K Q IG T+N +R DT L YPQ+
Sbjct: 129 SLILGICTGMVPYPEHNASPRNTMGAAMVK---QCIGMSTSNQKLRPDTRAHVLHYPQKA 185
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS--------- 92
L + + + RP ED+LV N+ S+E G+ RS
Sbjct: 186 LTTTQVGNAIDFDMRPAGQNFVVAVLSYEGHNIEDALVFNKGSIERGLGRSHFLRTFEGE 245
Query: 93 -------ESYKAEVDNKDIQVKSRPS-------DDMLNFGKIQSKSGDIVIGKYA----- 133
+ K E+ + + + P D ++N + + D++IGK +
Sbjct: 246 ERRYPGGQEDKFEIPDSEYRGARSPEAYANLDVDGLVNPETVVGPN-DVLIGKTSPPRFL 304
Query: 134 ----------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
E + +I ++ E+G+V ++L+ + +G A V IR +G
Sbjct: 305 EEQSDFGITIEQRRESAITMRSNEKGIVDNIILTESVNGTRLAKVKIRDQ----RIPEIG 360
Query: 184 DKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFV 242
DKF+S HGQKGV+G + P Q + D +++ +A P + G V+ +
Sbjct: 361 DKFASRHGQKGVIGLI--VPYQDMPFTENGIVPDLVINPHAIPSRMTVGHVL----EMIG 414
Query: 243 SQLLNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
++ + G R + F + KH F E D + +++ IF +
Sbjct: 415 GKVASMEGRRINATAFSGENEEDLRMGLKKHGFSHSGKEVFFDGVTG-KKIQADIFVGVI 473
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L ER
Sbjct: 474 LYQKLHHMVASKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMALKER 533
Query: 352 ----------LKCKNVANV--IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L C N + R YC C S DI + Y KLL E+ S+
Sbjct: 534 LLDESDKVVELVCSNCGMIATFDRKRNIRYCSNCGSETDIYPVEMSYAFKLLLDEIK-SL 592
Query: 400 GITLKF 405
G+ +
Sbjct: 593 GVAPRM 598
>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 1137
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 199/494 (40%), Gaps = 125/494 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ IIP + + K + AIG+ N R+DTLL + Y Q+P+
Sbjct: 669 LLGVCASIIPYPHNNQSPRNTYQCAMGKQAMGAIGYNQEN---RIDTLLYNMVYTQKPMV 725
Query: 64 W---ILISDCLGRP-----------------EDSLVMNQASLE-----CGVFR------- 91
+++ + P ED+L++N+ASLE C VFR
Sbjct: 726 ITKPMVMVNYDKLPAGQNAIVCVMSYSGYDIEDALIINKASLERGYGRCQVFRNTKCVLK 785
Query: 92 --SESYKAEVDNKDIQVKSR----------------PSDDMLNF-----GKIQSKSGDIV 128
++ + + ++R P + +LN + S+S
Sbjct: 786 RYADGTSDRIQGPLVDAETRKPLWKHGVLDTDGIGAPGEKILNRQVLINKSVPSRSNTSN 845
Query: 129 IGKYAEIG-ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ + E D + K E + KVL+S+N D + + +RQ+ +GDKFS
Sbjct: 846 VPIFGERDYIDTPVDYKGLEHSYIDKVLISTNSDDDSLIKIKLRQT----RIPEIGDKFS 901
Query: 188 SMHGQKGVLGFL-EQ-------------------------TPAQLLEAALGK-GACDGLM 220
S HGQKGV+G + EQ T +L+E GK G G
Sbjct: 902 SRHGQKGVVGLIVEQENMPFNESGICPDVIMNPHGFPSRMTVGKLIELLAGKAGVVTGKH 961
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAF 278
Y T F ST ++E + V N G SGIT PM+
Sbjct: 962 HYGTAFGGST---VSEVQEELVKNKFNYEGKDILYSGIT------------GEPMEV--- 1003
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+++ FYQ+ HM +DK+ R G LT +P R GG+ GEM+ DC
Sbjct: 1004 ------YVYSGPVFYQRLKHMVQDKIHARARGPRAVLTRQPTEGRAADGGLRLGEMERDC 1057
Query: 339 LIAHGASGNLHERL-------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLL 391
LIA+GAS + ERL +C +V N + +C C S+ +I +PY KLL
Sbjct: 1058 LIAYGASSMISERLMISSDAFQC-DVCNECGLIAYSKWCHGCKSSKEISTIKLPYATKLL 1116
Query: 392 SQELSFSMGITLKF 405
QEL SM I +
Sbjct: 1117 FQELR-SMNIVPRL 1129
>gi|346972359|gb|EGY15811.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium dahliae
VdLs.17]
Length = 1160
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 136/502 (27%), Positives = 203/502 (40%), Gaps = 125/502 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS + C VFR Y AE
Sbjct: 740 ISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YSAE 797
Query: 99 V------------DNKDIQVKSRPSDDMLNFGKI----------QSKSGDIVIGKYAEIG 136
+ D + +++ +P + + Q ++G+ ++ K +
Sbjct: 798 LQKYPNGKRERIGDPQYEEMEGKPRRRIAKHAALDPDGLAMVGGQVRAGEAMVKKETPLD 857
Query: 137 A---------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
D SI + + + KV++S ++ V RQ+
Sbjct: 858 TGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQT----RRPE 913
Query: 182 LGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAALGKGA 215
LGDKFSS HGQKGV+G + EQ T +LLE GK +
Sbjct: 914 LGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGKLLECLTGKAS 973
Query: 216 C-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
DG Y G +S+ L + G ++ K YF + P++
Sbjct: 974 VLDGRPDYGF------GDAFRSHPLKQMSEAL-----VDHGFSWEGKDYFTSGITGEPLE 1022
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM
Sbjct: 1023 ---------AYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEM 1073
Query: 335 KCDCLIAHGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGA 388
+ DCLIA+GAS L ERL + I + G YC C S ++ K +PY A
Sbjct: 1074 ERDCLIAYGASQLLLERLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAA 1133
Query: 389 KLLSQEL-SFSMGITLKFDTQL 409
KLL QEL S ++G+ L+ + +
Sbjct: 1134 KLLVQELISMNVGVRLQMEDEF 1155
>gi|448350440|ref|ZP_21539253.1| DNA-directed RNA polymerase subunit B' [Natrialba taiwanensis DSM
12281]
gi|242392366|dbj|BAH80396.1| RNA polymerase subunit B' [Natrialba taiwanensis DSM 12281]
gi|445636710|gb|ELY89870.1| DNA-directed RNA polymerase subunit B' [Natrialba taiwanensis DSM
12281]
Length = 609
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 201/511 (39%), Gaps = 147/511 (28%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYA-- 133
EV ++D++ +R D D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEVPSQDVR-GARGEDAYAHLDEDGLVNPETDVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 213
LGDKF+S HGQKGV+G L E P +LE GK
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTENGVVPDLIVNPHALPSRMTVGHILEMIGGK 421
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFE 270
GA +G TPF G +E N G SG+T
Sbjct: 422 LGAMEGRRVDGTPF---LGEDESELRDGLEDAGFNSAGKETMYSGVTG------------ 466
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
+ + IF I FYQ+ HM +K+ R+ G Q LT +P R R GG+
Sbjct: 467 ---------EKIEAEIFVGIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLR 517
Query: 331 FGEMKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNS 375
GEM+ D I HGA+ L ERL +C V NV QR V YC C
Sbjct: 518 IGEMERDVFIGHGAAMTLKERLLDESDREFINICGQCGMSAVENVEQRRV---YCPNCGE 574
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
DI + + Y KLL E+ ++GI + +
Sbjct: 575 ETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|448363837|ref|ZP_21552432.1| DNA-directed RNA polymerase subunit B' [Natrialba asiatica DSM
12278]
gi|242392358|dbj|BAH80392.1| RNA polymerase subunit B' [Natrialba asiatica]
gi|445645421|gb|ELY98425.1| DNA-directed RNA polymerase subunit B' [Natrialba asiatica DSM
12278]
Length = 609
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 136/510 (26%), Positives = 200/510 (39%), Gaps = 145/510 (28%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDIQ------VKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
EV ++D++ + +D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEVPSQDVRGARGEDAYAHLDEDGLVNPETDVDENSVLLGKTSPPR 306
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIP 362
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
LGDKF+S HGQKGV+G L E P +LE GK
Sbjct: 363 ELGDKFASRHGQKGVVGHLAPQEDMPFTENGVVPDLIVNPHALPSRMTVGHILEMIGGKL 422
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFEC 271
GA +G TPF G +E N G SG+T
Sbjct: 423 GAMEGRRVDGTPF---LGEDESELRDGLEDAGFNSAGKETMYSGVTG------------- 466
Query: 272 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ + IF I FYQ+ HM +K+ R+ G Q LT +P R R GG+
Sbjct: 467 --------EKIEAEIFVGIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRI 518
Query: 332 GEMKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSA 376
GEM+ D I HGA+ L ERL +C V NV QR V YC C
Sbjct: 519 GEMERDVFIGHGAAMTLKERLLDESDREFINICGQCGMSAVENVEQRRV---YCPNCGEE 575
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFD 406
DI + + Y KLL E+ ++GI + +
Sbjct: 576 TDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
Length = 1154
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 199/484 (41%), Gaps = 131/484 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 692 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 751
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N+AS++ G R E+ + +DI
Sbjct: 752 YDKLPAGQNATVAVMSYSGYDIEDALVINKASIDRGFGRCETRRKTTTILKRYPNHTQDI 811
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGK------YAEIGA------- 137
Q K+ D + G ++ SG I I K +++ A
Sbjct: 812 ISGMRVDENGDPIWQHKALGPDGLGEVG-MKLDSGQIYINKAVPTNPTSDLNAAPEQSQY 870
Query: 138 -DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
D + + E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV
Sbjct: 871 RDTPVMYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVC 926
Query: 197 GFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATS 229
G + Q T +++E GK G +G + Y T F
Sbjct: 927 GIIVQQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFG-- 984
Query: 230 TGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + + + V Q N G SGIT EC +++ IF
Sbjct: 985 -GSKLEDMSKILVDQGFNYSGKDMLYSGITG-----------EC----------LQAYIF 1022
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1023 FGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQL 1082
Query: 348 LHERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL + A + ++G +C C SA++IIK +PY AKLL QEL SM I
Sbjct: 1083 LLERLMISSDAFEVDVCDECGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNI 1141
Query: 402 TLKF 405
+
Sbjct: 1142 APRL 1145
>gi|448366554|ref|ZP_21554677.1| DNA-directed RNA polymerase subunit B' [Natrialba aegyptia DSM
13077]
gi|242392356|dbj|BAH80391.1| RNA polymerase subunit B' [Natrialba aegyptia]
gi|445654009|gb|ELZ06865.1| DNA-directed RNA polymerase subunit B' [Natrialba aegyptia DSM
13077]
Length = 609
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 201/511 (39%), Gaps = 147/511 (28%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 134 LIFGIGAGMIPYPEHNASPRITMGAGMVKQS-------LGLPSANYRIRPDTRQHLLHYP 186
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LVMN+AS+E + RS ++
Sbjct: 187 QLSMVKTQTTEQIGFDDRPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246
Query: 98 ---------------EVDNKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYA-- 133
EV ++D++ +R D D L + +++GK +
Sbjct: 247 EGEERRYPGGQEDRFEVPSQDVR-GARGEDAYAHLDEDGLVNPETDVDENSVLLGKTSPP 305
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RI 361
Query: 180 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 213
LGDKF+S HGQKGV+G L E P +LE GK
Sbjct: 362 PELGDKFASRHGQKGVVGHLAPQEDMPFTENGVVPDLIVNPHALPSRMTVGHILEMIGGK 421
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFE 270
GA +G TPF G +E N G SG+T
Sbjct: 422 LGAMEGRRVDGTPF---LGEDESELRDGLEDAGFNSAGKETMYSGVTG------------ 466
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
+ + IF I FYQ+ HM +K+ R+ G Q LT +P R R GG+
Sbjct: 467 ---------EKIEAEIFVGIIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLR 517
Query: 331 FGEMKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNS 375
GEM+ D I HGA+ L ERL +C V NV QR V YC C
Sbjct: 518 IGEMERDVFIGHGAAMTLKERLLDESDREFINVCGQCGMSAVENVEQRRV---YCPNCGE 574
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
DI + + Y KLL E+ ++GI + +
Sbjct: 575 ETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
Length = 1206
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 183/435 (42%), Gaps = 116/435 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN R+DT L+YPQ+P
Sbjct: 708 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGMYATNYQTRMDTQGFVLYYPQKP 764
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA---- 97
L D L EDSL++N +S++ G RS Y+A
Sbjct: 765 LVCTRAMDYLKFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEE 824
Query: 98 ----------EVDNKDIQVKSRPSD---DMLNFGKI-----QSKSGDIVIGKYAEI---- 135
E++ D V ++ D L+ + + DI+ GK +
Sbjct: 825 EKKAGSLSREEIEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDP 884
Query: 136 -GA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL---GD 184
GA D S+ L+ E G++ +V+L++ND+G+ F + +R + C+ GD
Sbjct: 885 TGAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVR-------TICIPQVGD 937
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G +E P L+EA + K A
Sbjct: 938 KFASRHGQKGTCGITYTMEDMPFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVAALM 997
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VSQ+L+ +G + G ++ + L
Sbjct: 998 GSEGDATPFTKVT--------VDNVSQMLHDLGYQRRGWEVMYNGHTGRQL--------- 1040
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
R+ IF T+YQ+ HM + K+ R G Q LT +P R R GG+ FGEM+ D
Sbjct: 1041 -----RAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERD 1095
Query: 338 CLIAHGASGNLHERL 352
C+I+HGA+ L ERL
Sbjct: 1096 CIISHGAAAFLKERL 1110
>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
Length = 1141
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 192/481 (39%), Gaps = 126/481 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 681 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKSKTIELID 740
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N++S++ G R E+ K +DI
Sbjct: 741 YDKLPAGQNATVAVMSYSGYDIEDALVINKSSIDRGFGRCETRKKTTTILKRYPNHTQDI 800
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHS---------- 140
Q +S D + G ++ SG I I K A S
Sbjct: 801 IGGMRVDENGEPIWQHQSLGPDGLGEVG-MKVTSGQIYINKSIPTNASDSVLNQVQSQYR 859
Query: 141 ---IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
I + E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 860 EAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCG 915
Query: 198 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 230
+ Q T ++LE GK G +G + Y T F S
Sbjct: 916 IIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMLELVSGKAGVLNGTLEYGTCFGGS- 974
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+ +S++L G SG ++ CL ++ +F
Sbjct: 975 -------QLADMSEILVNNGFNYSGKDMLYSGITGECL--------------QAYVFFGP 1013
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L E
Sbjct: 1014 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1073
Query: 351 RLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
RL +V N + +C C SA+ IIK +PY AKLL QEL SM I +
Sbjct: 1074 RLMLSSDAFEVDVCNKCGLMGYSGWCTSCKSAEHIIKMTIPYAAKLLFQEL-LSMNIAPR 1132
Query: 405 F 405
Sbjct: 1133 L 1133
>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
Length = 1175
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 199/493 (40%), Gaps = 130/493 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 702 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 758
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 759 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 818
Query: 102 KDIQVK------SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ ++ +P+ +D + ++ D+VIGK +
Sbjct: 819 ESKRIGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETD 878
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 879 DDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 934
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK G+
Sbjct: 935 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNK 994
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 995 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1037
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1038 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1150
Query: 383 NVPYGAKLLSQEL 395
+PY AKLL QEL
Sbjct: 1151 KLPYAAKLLFQEL 1163
>gi|410610271|gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
alniformosanae]
Length = 569
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 166/412 (40%), Gaps = 111/412 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 187 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 243
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 244 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSIIMNQSSVDRGFFRSLFFRSYRDE 303
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
+K RP+ DD L + D++IGK + I D
Sbjct: 304 EKKMGTLIKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDE 363
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 364 SQGQSFRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 419
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 420 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 479
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 480 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 520
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ F
Sbjct: 521 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 569
>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
Length = 1214
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/482 (26%), Positives = 192/482 (39%), Gaps = 125/482 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I ++
Sbjct: 759 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 818
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
P ED+L++N+AS + G R + K V ++ + +
Sbjct: 819 YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQ--LKTYANGTS 876
Query: 113 DMLNFGKIQS---------KSGDIVIGKYAEIG--------------------ADHSIKL 143
D +N G + + K G +G E G D K
Sbjct: 877 DRINAGALDTDNKSHQAIGKDGIAQVGARIEAGDAYLLKSIPLDTAGPATNTYKDKPEKY 936
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 201
K+ + + K ++ N+ G + RQ+ LGDKFSS HGQKG G + Q
Sbjct: 937 KNPDFSYIDKACVTENEAGVTLIKLLFRQT----RRPELGDKFSSRHGQKGTTGLIVQQE 992
Query: 202 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 236
T +++E GK G +G + Y T F ST + +
Sbjct: 993 DMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGST---VED 1049
Query: 237 QHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 294
+ V + + G SGIT ++ F F I +YQ
Sbjct: 1050 MSKILVDKGFSYTGKDYLTSGITGEAHQFYTF--------------------FGPI-YYQ 1088
Query: 295 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 354
+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1089 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLML 1148
Query: 355 KNVANVIQ------RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDT 407
+ A+ + ++ YC++C S + K +PY AKLL QEL S ++ +T+ +
Sbjct: 1149 SSDAHTVDVCEKCGQMGYSGYCKLCESEKAVRKITMPYAAKLLIQELGSMNVKVTIGLED 1208
Query: 408 QL 409
+
Sbjct: 1209 EF 1210
>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1152
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 133/480 (27%), Positives = 193/480 (40%), Gaps = 124/480 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 694 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIELID 753
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N++S++ G R + + KDI
Sbjct: 754 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTTVLKRYPNHTKDI 813
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHT----- 146
R D D L + +SG + I K A SI + T
Sbjct: 814 IAGMRVKDNGEPTFQHASLGPDGLAEVGTRVESGQVYINKSIPTNAADSIMNQDTGEYRE 873
Query: 147 --------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
E + +V+++++D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 874 TPVVYKAPEPSYIDQVMMTTSDNDQELIKVLLRQT----RRPELGDKFSSRHGQKGVCGI 929
Query: 199 LEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ Q T ++LE GK G +G + Y T F G
Sbjct: 930 IVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLNGSLEYGTCF----G 985
Query: 232 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
G E +S++L G SG ++ CL ++ IF
Sbjct: 986 GSDLED----MSKILMDKGFNYSGKDMLYSGITGECL--------------QAYIFFGPI 1027
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ER
Sbjct: 1028 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1087
Query: 352 LKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
L ++ N + +C C +A+++I+ +PY AKLL QEL SM I +
Sbjct: 1088 LMISSDAFDVDICNKCGLMGYNGWCTSCKNAENVIRMQIPYAAKLLFQEL-LSMNIAPRL 1146
>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
Length = 1141
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 197/481 (40%), Gaps = 126/481 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 681 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 740
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N++S++ G R E+ K +DI
Sbjct: 741 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRKKTTTILKRYPNHTQDI 800
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHS---------- 140
Q KS D + G ++ +SG I I K A S
Sbjct: 801 IGGMRVDENGEPIWQHKSLGPDGLGEVG-MKVESGQIYINKSVPTNASDSVLTQSQSQYR 859
Query: 141 ---IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
I + E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 860 EAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCG 915
Query: 198 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 230
+ Q T +++E GK G +G + Y T F S
Sbjct: 916 IIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGTLEYGTCFGGSK 975
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+ +S++L G SG ++ CL ++ +F
Sbjct: 976 --------LADMSEILINNGFNYSGKDMLYSGITGECL--------------QAYVFFGP 1013
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L E
Sbjct: 1014 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1073
Query: 351 RLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
RL + A +V + ++G +C C SA+ +IK +PY AKLL QEL SM I +
Sbjct: 1074 RLMLSSDAFEVDVCDKCGLMGYSGWCTSCKSAEHVIKITIPYAAKLLFQEL-LSMNIAPR 1132
Query: 405 F 405
Sbjct: 1133 L 1133
>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe 972h-]
gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
polymerase III subunit 2; Short=RNA polymerase III
subunit C2; AltName: Full=C128; AltName:
Full=DNA-directed RNA polymerase III 130 kDa polypeptide;
AltName: Full=RPC130
gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe]
gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
Length = 1165
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 194/498 (38%), Gaps = 129/498 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL + YPQ+P+
Sbjct: 693 ILGAVAGLIPYPHHNQSPRN--TYQC-AMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMV 749
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES---- 94
+ +G ED+LV+N++S++ C VF S
Sbjct: 750 KTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVR 809
Query: 95 -YKAEVDNKDIQVKSRPS------------DDMLNFGKIQSKSGDIVIGKYAEIGA-DHS 140
Y ++ + P DD L + + G I + K A D+S
Sbjct: 810 KYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNS 869
Query: 141 IKLKHT-----------------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
I L HT E G + KV+L++ D + V +RQ+ LG
Sbjct: 870 ITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQT----RRPELG 925
Query: 184 DKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GAC 216
DKFSS HGQKGV G + Q T +++E GK G
Sbjct: 926 DKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVL 985
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMD 274
G + Y T F G + + + V N G SGIT
Sbjct: 986 RGTLEYGTCFG---GTKVEDASRILVEHGYNYSGKDMLTSGITG---------------- 1026
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ + IF +YQ+ HM DK+ R G LT +P R R GG+ GEM
Sbjct: 1027 -----ETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1081
Query: 335 KCDCLIAHGASGNLHERLKCKNVANVIQRVVG-------GPYCRICNSADDIIKANVPYG 387
+ DCLIA+GAS L ERL + A + V G +C C S +++K +PY
Sbjct: 1082 ERDCLIAYGASQLLLERLMISSDACDVD-VCGQCGLLGYKGWCNSCQSTREVVKMTIPYA 1140
Query: 388 AKLLSQELSFSMGITLKF 405
AKLL QEL SM I +
Sbjct: 1141 AKLLFQEL-LSMNIVPRL 1157
>gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subunit, partial [Rhododendron
macrophyllum]
Length = 580
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 167/416 (40%), Gaps = 111/416 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 193 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 249
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 250 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 309
Query: 99 VDNKDIQVKS-------------------RPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK + DD + D++IGK I D
Sbjct: 310 EKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDD 369
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F + +R + +GDKF
Sbjct: 370 AQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRS----IRIPQIGDKF 425
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 426 SSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 485
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + P+ +
Sbjct: 486 EGDATPFTDVT--------VDNISKALHKCGYQMRGFERMYNGH-----TGRPLTYT--- 529
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 530 ------IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 579
>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 1159
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 133/485 (27%), Positives = 189/485 (38%), Gaps = 138/485 (28%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G V Y SP QA+G N ++R DT L L YPQ+P+ D +G
Sbjct: 687 GLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIG 746
Query: 73 RP--------------------EDSLVMNQASLECGVFR---SESYKAEVDNKDI----Q 105
ED+L+MN+AS++ G R + Y + I +
Sbjct: 747 YDNLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEE 806
Query: 106 VKSRP-------------------------------SDDMLNFGKIQSKSGDIVIGKYAE 134
+++ P +D L F Q G I+I K +
Sbjct: 807 LRAPPVVGGGGKGGGRHQRQGGSVADKHCSCRYAIIDEDGLPFSGEQVVDGGILINKVSP 866
Query: 135 IG----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
+ D I K+ V +V+ + N+D RQ+ LGD
Sbjct: 867 MSDAATGQVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQT----RRPELGD 922
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKGV+G + T +LLE GK G D
Sbjct: 923 KFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKAGVLD 982
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G SY T F G T++H ++Q L G S +I L EC
Sbjct: 983 GERSYGTAF-----GGTTKEH---MTQSLIRHGFHPSAKEYITSGVTGEAL-EC------ 1027
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
IF +YQ+ HM DK+ R+TG LT +P R + GG+ GEM+ D
Sbjct: 1028 -------YIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEMERD 1080
Query: 338 CLIAHGASGNLHERLKCKN---VANVIQRVVGGPY----CRICNSADDIIKANVPYGAKL 390
CL+A+GAS L ERL + A+V +R Y C++C ++++I+ +PY KL
Sbjct: 1081 CLVAYGASNLLLERLMLSSDVFTASVCRRCGLLSYQNGTCKLCGTSENIVDIRMPYACKL 1140
Query: 391 LSQEL 395
L QEL
Sbjct: 1141 LFQEL 1145
>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
insculpta]
Length = 936
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 174/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN N+R+DT+ L+YPQ
Sbjct: 552 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVTLTNYNVRMDTMANVLYYPQ 606
Query: 60 RPL------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL I+ C G EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 607 KPLGTTRSMEYLKFRELPAGQNAIVAIACYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYM 666
Query: 100 DNKD------------------IQVKSRPSDDMLNFGKIQSKS----GDIVIGKYAEIGA 137
D + +++K D + + G I S DI+IGK A +
Sbjct: 667 DQEKRVGMSVVEQFEKPTRADTLRMKHGTYDKLDDDGIISPGSRVSGEDIIIGKTAPMAP 726
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G++ +VLL++N DG F V R + +
Sbjct: 727 DAEELGQRTKLHVKRDVSTPLRSTESGIIDQVLLTTNIDGHKFVKVRTRTT----KIPQI 782
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 783 GDKFASRHGQKGTIGVTYRQEDMPFTADGLVPDLIINPHAIPSRMTIAHLIECLLSKVGA 842
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T IT+ VS LL G + G ++ +
Sbjct: 843 LRGQEGDATPFTDVT---ITQ-----VSDLLRAHGFQQRGFEIMYNGH-------TGKKQ 887
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+A +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 888 VA-------QVFLGPTYYQRLRHMVDDKIHARARGPXQILTRQPVEGRARDGGLRF 936
>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
Length = 1169
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 192/489 (39%), Gaps = 126/489 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + K AIG+ N IR+DTLL + YPQ+P+
Sbjct: 695 ILGAVAGLIPYPHHNQSPRNTYQCAMGKQGQGAIGY---NQLIRIDTLLYLMLYPQQPMV 751
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYK------- 96
+ +G ED+LV+N+ASL+ G RS++ K
Sbjct: 752 KSRTIELIGYDKLPAGTNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIR 811
Query: 97 ----------AEVDNKDIQVKSRPSDDMLNFGKI-----QSKSGDIVIGKYAEIGADHS- 140
A+ D K + D+L I + + GD+ + K + A+ +
Sbjct: 812 KYPNGTHDRLADAPVDDTTGKRQKRYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNS 871
Query: 141 ---------------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
+ K G + +VL++ D + IRQ+
Sbjct: 872 SAAIMIGASNAAASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALIRQT----RR 927
Query: 180 ACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK 213
LGDKFSS HGQKGV G + Q T +++E GK
Sbjct: 928 PELGDKFSSRHGQKGVCGLIVQQEDMPFTDQGINPDIIMNPHGFPSRMTVGKMIELLSGK 987
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
G G + Y T F GG E + + + +G + K + P
Sbjct: 988 AGVITGTLQYGTAF----GGSKVEDMSALLVE---------NGYNYAGKETLTSGITGQP 1034
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
++ + + +YQ+ HM +DK+ R G LT +P R R GG+ G
Sbjct: 1035 LECYVYFGPI---------YYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1085
Query: 333 EMKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPY 386
EM+ DCLI +GA+ L ERL + A + ++G +C C+S+ +++ +PY
Sbjct: 1086 EMERDCLIGYGATQLLLERLMISSDAFTVHACQKCGLMGYNGFCPYCSSSKHVVQLTIPY 1145
Query: 387 GAKLLSQEL 395
G KL+ QEL
Sbjct: 1146 GTKLMLQEL 1154
>gi|281204919|gb|EFA79113.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1965
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 167/402 (41%), Gaps = 111/402 (27%)
Query: 22 QGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------- 72
QG+ ++ S QA+G TN +R+DT+ LFYPQ+PL + L
Sbjct: 1097 QGFFIHNSAM-GKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQN 1155
Query: 73 -----------RPEDSLVMNQASLECGVFRSESYKAEVDNKDIQVK------SRPSDDML 115
EDSL++NQ++++ G+FRS Y++ D + Q +P D
Sbjct: 1156 VCVAIACYSGYNQEDSLILNQSAIDRGLFRSMFYRSYKDEQKKQTSMMEETFEKPDRDTC 1215
Query: 116 ------NFGKIQSKS----------GDIVIGKYAEI---------------GADHSIKLK 144
++ KI DI+IGK + D S ++
Sbjct: 1216 VGMRHGSYEKIDEDGLVAPGVRVTGDDIIIGKTTPLPPQDEDLGPKTRRQSKRDSSTAMR 1275
Query: 145 HTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----- 199
+E G+V V+L+++ DG F V +R + + +GDKFSS HGQKG G
Sbjct: 1276 SSENGIVDSVILTTSGDGLKFTKVRVRS----MRTPQIGDKFSSRHGQKGTCGMTYRQED 1331
Query: 200 ---------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQ 237
T QL+E LGK + G ATPF T I
Sbjct: 1332 LPWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLGKVSSMTGDEGDATPFTDVTVEAI--- 1388
Query: 238 HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFI 297
S+ L+ IG + +G ++ + MD + IF T+YQ+
Sbjct: 1389 -----SKALHGIGYQMTGHEVMYNGHT-----GRRMD---------AQIFIGPTYYQRLK 1429
Query: 298 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
HM +DK+ R+ G Q LT +PV R R GG+ FGEM+ DC+
Sbjct: 1430 HMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCV 1471
>gi|346323848|gb|EGX93446.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Cordyceps
militaris CM01]
Length = 1164
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 200/494 (40%), Gaps = 118/494 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 689 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 745
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRS------ 92
+++S ED+LV+N+AS++ C VFR
Sbjct: 746 ISKTIQLVNYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 805
Query: 93 -------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
E V+ D + R DD L + SG +I K +
Sbjct: 806 KYPNGRRERIGDPVNEGDGDQRRRSEKHKALDDDGLAMVGCRVFSGQSMIKKETPLDMTT 865
Query: 137 ------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D ++ + + + KV++S + V RQ+ LGD
Sbjct: 866 TGIGLDRGSSDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQT----RRPELGD 921
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH---- 238
KFSS HGQKGV+G + + PFA + T +I H
Sbjct: 922 KFSSRHGQKGVVGII-------------------VDHEDMPFADNGLTPDIIMNPHGFPS 962
Query: 239 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL----------------- 281
+ V +LL C+ + S I + F P++ ++ + L
Sbjct: 963 RMTVGKLLECLTGKASIIHGRPDYGFGDAFRSHPVEEMSQVLLDHGFSWEGKDYFTSGLT 1022
Query: 282 ---VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ + IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DC
Sbjct: 1023 GEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDC 1082
Query: 339 LIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLS 392
LIA+GAS L ERL + V ++ Q+ + G YC+ C S ++ K +PY AKLL
Sbjct: 1083 LIAYGASQLLLERLMISSDGVVIDICQQCGLFGYKGYCQTCKSTREVTKMTMPYAAKLLV 1142
Query: 393 QEL-SFSMGITLKF 405
QEL S ++G+ L+
Sbjct: 1143 QELISMNVGVRLQL 1156
>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Mycosphaerella punctiformis]
Length = 935
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 175/416 (42%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN N+R+DT+ L+YPQ
Sbjct: 551 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVTLTNYNVRMDTMANVLYYPQ 605
Query: 60 RPLFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + I+ G EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 606 KPLATTRSMEFLKFRDLPAGQNAIVAIASYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYM 665
Query: 100 DNKD------IQVKSRP-----------SDDMLNFGKIQS-----KSGDIVIGKYA---- 133
D + ++ RP S D L+ I S GD++IGK A
Sbjct: 666 DQEKRVGMSVVESFERPERAATMKMKHGSYDKLDDDGIVSPGCRVSGGDMLIGKTAPMAP 725
Query: 134 -----------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
++ D S L+ TE G+V +VLL++N +G FA V R + +
Sbjct: 726 DAEELGMRTKMQVKRDVSTPLRSTENGVVDQVLLTTNTEGLRFAKVRTR----VTKVPQI 781
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 782 GDKFASRHGQKGTIGITYRQEDMPFSADGLVPDIIINPHAIPSRMTIAHLIECLLSKVGA 841
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T + +S +L G + G ++ + L
Sbjct: 842 LQGQEGDATPFTDVT--------VTSISMILADHGFQQRGFEVMYNGHTGKKL------- 886
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 887 -------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQVLTRQPVEGRARDGGLRF 935
>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
marneffei ATCC 18224]
gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
marneffei ATCC 18224]
Length = 1212
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 125/484 (25%), Positives = 198/484 (40%), Gaps = 128/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG +N +R+D+LL + YPQ+P+ + +
Sbjct: 744 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTRTIELIK 803
Query: 73 RP--------------------EDSLVMNQASLE-----CGVFRS-----ESYK------ 96
ED+LV+N+ S++ C VFR +SY
Sbjct: 804 YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYPNGSEDR 863
Query: 97 ---AEVDNKDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKYAEIGA------------- 137
E+D + + +D + G + S+ G + I K A
Sbjct: 864 LRGPELDEEGAPITKHALLDTDGLAAVGAVVSQ-GQVYINKEVPAAAFSAGITGSDVGRP 922
Query: 138 -DHS---IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
D++ + K + + KV++S + V RQ+ +GDKFSS HGQK
Sbjct: 923 PDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQT----RRPEVGDKFSSRHGQK 978
Query: 194 GVLGFLEQ--------------------------TPAQLLEAALGKGACDGLMSYATPFA 227
GV+G + + T +LLE GK G++S +
Sbjct: 979 GVVGIIAEQADMPFNDQGIVPDIIMNPHGFPSRMTVGKLLELVAGKA---GVLSGQHGYG 1035
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
T+ GG EQ + + + G ++ K Y + P+ + F+ +
Sbjct: 1036 TAFGGSPVEQMSAILV---------DKGFSYGGKDYLTSGITGEPLPFYVFMGPI----- 1081
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+YQ+ HM +DK+ R+TG LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1082 ----YYQKLKHMVQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1137
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL K+ ++ ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1138 LLERLMLSSDKHEVDICEKCGFMGYQNWCQRCRSSRGVVKMTIPYAAKLLIQEL-LSMNV 1196
Query: 402 TLKF 405
T +
Sbjct: 1197 TARL 1200
>gi|412990492|emb|CCO19810.1| RNA Polymerase subunit 2 [Bathycoccus prasinos]
Length = 1149
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 189/462 (40%), Gaps = 111/462 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG------------- 72
+YQ Q Q +G P + R D+ L +L PQRP+ D G
Sbjct: 709 MYQCQM-GKQTMGVPMHSFPFRSDSKLYRLHTPQRPIALTKTYDKYGIDNYPLGTNAVVA 767
Query: 73 -------RPEDSLVMNQASLECGVFRSESYKAE----VDNKDIQVKSRPSDDMLNFGKIQ 121
ED+++MN+ S+E G+ + YK E D D S P LN K
Sbjct: 768 VLSYTGYDMEDAMIMNKFSMERGLAHATLYKTEGLTLKDKNDTFTVSGP----LNQTKFD 823
Query: 122 S--------KSGDIVIGKYAEI-GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQ 172
+ + GD I I G LK ++G+V +V +S++ + ++ + +
Sbjct: 824 ASPLPGSILQKGDSFISVSNRISGKLKKTMLKGEDKGIVDRVKISASQEQSSYEKLDVTL 883
Query: 173 SVNMVHSACLGDKFSSMHGQKGVLGFL---------------------------EQTPAQ 205
N + +GDKFSS HGQKGVL +L T
Sbjct: 884 RFN--RNPIIGDKFSSRHGQKGVLSYLWPEEDLPFIERNGIKPDIIINPHAFPSRMTIGM 941
Query: 206 LLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFV----SQLLNCIGARNSGITFIF 260
L+E+ K GA G A+PF + E+H + + L +G + +G T
Sbjct: 942 LMESLASKEGALSGNFVDASPFK-----ALKEEHLTIPLNNHYERLKDMGYKFTG-TETM 995
Query: 261 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 320
+ F C FE IF + +YQ+ HM DK + R+ G PLT +P+
Sbjct: 996 INGFTGCTFEVD-------------IFIGLVYYQRLRHMVSDKFQVRSEGPNNPLTKQPI 1042
Query: 321 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV-- 365
RK GGI FGEM+ D L++HG + + +RL C ++ + +Q+V
Sbjct: 1043 KGRKMGGGIRFGEMERDSLLSHGVANLIQDRLLASSDKHSFKICSSCGSMISHLQKVALR 1102
Query: 366 ----GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 403
C C S +I+ +VPY K L EL+ +M I L
Sbjct: 1103 NEECSNDICITCRSTSNIVNVHVPYVYKYLISELA-AMNIRL 1143
>gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subunit, partial [Acer circinatum]
Length = 580
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 164/410 (40%), Gaps = 111/410 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 200 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 256
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 257 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 316
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 317 EKKMGTLVKEDFGRPDRCNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE 376
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 377 AQGQSSRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 432
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 433 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 492
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 493 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 533
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+
Sbjct: 534 ---PAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 580
>gi|115503929|ref|XP_001218757.1| DNA-directed RNA polymerase III [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|83642239|emb|CAJ15945.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261325981|emb|CBH08807.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1129
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 136/467 (29%), Positives = 200/467 (42%), Gaps = 69/467 (14%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL- 62
LLG+ GIIP + + +QS QA+G N IR+DT+L YPQRPL
Sbjct: 671 LLGVVAGIIPFPHHNQSARN--TFQSAM-GKQALGTIAYNQYIRMDTVLMLGAYPQRPLC 727
Query: 63 ---------FWIL----------ISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+ IL +S ED+ V N++SL+ C V R + E
Sbjct: 728 RTKAMNLTNYEILGAGINAMVCVMSYSGYDIEDAQVYNRSSLDRGYGRCVVLRKHEVELE 787
Query: 99 -VDNKDIQVKSRPSDD------MLNFGKIQSKSG-----DIVIGKYAEIGA----DHSIK 142
+ N + + P+D LN I SK DI++ KY + + + +
Sbjct: 788 RLPNGEYDI-ILPADSNVGRHSALNSDGIASKGAVVRQFDILVNKYTPVPSMEPRPNPLV 846
Query: 143 LKHTERGLVLKVLLSSNDDGKNFAVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLE 200
K+ + +V V++S D V I+ V GDKFSS HGQKGV+G +
Sbjct: 847 YKYPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRGPEPGDKFSSRHGQKGVVGLIT 906
Query: 201 QTPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLNCIG--------- 250
+G C ++ F + T G + E S VS L G
Sbjct: 907 DGVNMPFNE---QGICPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGKFGDGTAFGGDK 963
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
A + G I +H + + + + ++R+ +F +YQ+ HM DK+ R TG
Sbjct: 964 AEDLGEELI-RHGYNYHGKDIFYSGVTGE-MLRAYVFFGPIYYQRLKHMVTDKMHARATG 1021
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG-- 366
LT +P R R GG+ GEM+ DC++ +GAS L+ERL + I R G
Sbjct: 1022 PRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLVSSDLFTIDICRCCGFM 1081
Query: 367 --GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
YC CN+ + + + NVPY KLL QEL MGI+ + G
Sbjct: 1082 GYNGYCSYCNAKNTVSRVNVPYAFKLLLQELQ-GMGISTRLSLDFMG 1127
>gi|451995160|gb|EMD87629.1| hypothetical protein COCHEDRAFT_1206799 [Cochliobolus heterostrophus
C5]
Length = 1215
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 195/483 (40%), Gaps = 127/483 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I ++
Sbjct: 760 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 819
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
P ED+L++N+AS + G R + +K V ++ + +
Sbjct: 820 YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHV--TPLKTYANNTS 877
Query: 113 DMLNFGKI--------------------QSKSGDIVI---------GKYAEIGADHSIKL 143
D +N G + + ++GD + G + + D +
Sbjct: 878 DRINAGALDVANPNHQAIGQDGIAQVGARLEAGDAFLLKSIPQDTAGPASNLYKDKPERY 937
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 201
K + + K ++ N+ G + +RQ+ LGDKFSS HGQKG G + Q
Sbjct: 938 KLPDCSYIDKACITENESGTTLIKLLMRQT----RRPELGDKFSSRHGQKGTTGLIVQQE 993
Query: 202 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 236
T +++E GK G +G + Y T F ST + +
Sbjct: 994 DMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGST---VED 1050
Query: 237 QHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 294
Q V + + G SGIT ++ F F I +YQ
Sbjct: 1051 MSQILVEKGFSYTGKDYLTSGITGEAHQFYTF--------------------FGPI-YYQ 1089
Query: 295 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 354
+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1090 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMI 1149
Query: 355 KNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 406
+ A+ + Q G YC++C S + K +PY AKLL QEL S ++ +T+ +
Sbjct: 1150 SSDAHNVDVCEKCGQMGYSG-YCKLCESEKAVRKITMPYAAKLLIQELGSMNVKVTIGLE 1208
Query: 407 TQL 409
+
Sbjct: 1209 DEF 1211
>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
Length = 942
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 172/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 558 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 612
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 613 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 672
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 673 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 732
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 733 DAQELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 788
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 789 GDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGA 848
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q +SQLL G + G ++ + L
Sbjct: 849 ITGQEGDATPFT----DVTVDQ----ISQLLEDAGYQKRGFEIMYNGHTGKKL------- 893
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 894 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 942
>gi|82914537|ref|XP_728803.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
17XNL]
gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii yoelii]
Length = 1312
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 139/307 (45%), Gaps = 66/307 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
D S+ ++ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1028 DCSLSIRSNENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1083
Query: 198 F---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 230
+E P L+E GK A +G ATPF+
Sbjct: 1084 ITYRMEDMPFTSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK-- 1141
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
IT Q +S+ L+ +G G ++ + ++ S IF
Sbjct: 1142 ---ITVQE---ISERLHRLGYEKYGNDILYNGHNG--------------KMLTSKIFIGP 1181
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
TFYQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1182 TFYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1241
Query: 351 RLKCKNVANVIQ-----------RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFS 398
RL ++ A + + Y C ICNS +I + +PY KLL QEL +
Sbjct: 1242 RLFEESDAYRVHVCDICGLCCVADINKNAYECTICNSKTNISQIYIPYACKLLFQEL-MT 1300
Query: 399 MGITLKF 405
M I K
Sbjct: 1301 MAIYPKL 1307
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 23/116 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS S QA+G TN NIR+DTL L+YPQ+P
Sbjct: 725 SLILGVCASIIPFSDHNQSPRN--TYQSA-MSKQAMGIYVTNFNIRLDTLAHLLYYPQKP 781
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA 97
L ++ L EDSL+MNQ+S++ G+FRS Y+
Sbjct: 782 LVCTKATEYLHFKDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRT 837
>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
Length = 931
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 173/420 (41%), Gaps = 113/420 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 540 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNFQTRMDTLANILYYPQKP 596
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 597 LTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDA 656
Query: 102 KD------IQVKSRPSDDML------NFGKIQSK---------SGD-IVIGKYAEIGADH 139
+ ++ +P+ D + K++ SGD I+IGK A I AD
Sbjct: 657 EKKAGMMFMEEFEKPTRDTTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPADS 716
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++N DG F V +R + +GD
Sbjct: 717 EELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRST----RVPQMGD 772
Query: 185 KFSSMHGQKGVLGFLEQ-----------TP---------------AQLLEAALGK-GACD 217
KF+S HGQKG +G + TP ++E LGK
Sbjct: 773 KFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLGKVSTLT 832
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L G ++ G ++ + L
Sbjct: 833 GNEGDATPFTDVTVEAI--------SQALQAQGYQSRGFEVMYNGFTGRKL--------- 875
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 876 -----NVQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 930
>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
Length = 1150
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 136/484 (28%), Positives = 201/484 (41%), Gaps = 131/484 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 688 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 747
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N+AS++ G R E+ + +DI
Sbjct: 748 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQDI 807
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI-----KLKH 145
Q K+ +D + G ++ +SG I I K + + + ++
Sbjct: 808 IGGMRVDENGEPIWQHKALGADGLGEVG-MKVESGQIYINKSVPTNQSNDMTTQAQQAQY 866
Query: 146 TERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
E ++ + V++S +D+ + V +RQ+ LGDKFSS HGQKGV
Sbjct: 867 RETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVC 922
Query: 197 GFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATS 229
G + T +++E GK G +G + Y T F
Sbjct: 923 GIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFG-- 980
Query: 230 TGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + + + V Q N G SGIT EC +++ IF
Sbjct: 981 -GSKLEDMSKILVDQGFNYSGKDMLYSGITG-----------EC----------LQAYIF 1018
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1019 FGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQL 1078
Query: 348 LHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL + A +V + ++G +C C SA++IIK +PY AKLL QEL SM I
Sbjct: 1079 LLERLMISSDAFEVDVCDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNI 1137
Query: 402 TLKF 405
+
Sbjct: 1138 APRL 1141
>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
Length = 1097
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 185/470 (39%), Gaps = 111/470 (23%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y + SP QA+G N R+DTLL L YP RP+ I + D
Sbjct: 651 GLIPYPNHNQSPRNTYQCAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVVKTRTIELID 710
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFR-------SESYKAEVDNKDIQ 105
P ED+ VMN+AS + G R S K N
Sbjct: 711 FEKLPAGQNPIVAVMSFSGYDIEDATVMNRASFDRGYGRCVVYSKMQTSLKKYNGNLTDI 770
Query: 106 VKSRPSDDMLNFGKIQS-----KSGDIVIGKYAEIGADHSIKLKHTE---RGLVLK---- 153
++ P D+ N I + + D+++ K I I T+ +G V K
Sbjct: 771 IRPAPRDEAGNAKGIVAVGQPMYNRDVLVNKQTPIKRGTEIDYASTQVRYKGTVGKDAYC 830
Query: 154 --VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------ 199
V++SSN++ + +R + LGDKFSS HGQKGV G +
Sbjct: 831 DQVMVSSNNEDSMLIKIRVRST----RIPELGDKFSSRHGQKGVCGLIVNQEDMPFNDAG 886
Query: 200 --------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQ 244
T +L+E K G +G +Y T F G I E + +
Sbjct: 887 VCPDKIMNPHGFPSRMTVGKLMEFCGAKAGVLNGNYNYGTAFG---GTTIPEMCNTLLKH 943
Query: 245 LLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKV 304
G + K Y + P++ S IF FYQ+ HM DK+
Sbjct: 944 ----------GYNYHGKDYLTSGITGEPLE---------SYIFMGPVFYQKLKHMVMDKM 984
Query: 305 KFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR- 363
R+ G LT +P R R GG+ GEM+ DCLI HG+S L ERL + A +
Sbjct: 985 HARSQGPMTLLTRQPTEGRAREGGLRLGEMERDCLIGHGSSMLLLERLMISSDAFEVHAC 1044
Query: 364 ----VVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
++G +C+ C S+ I K +PY KLL QEL SM I + Q
Sbjct: 1045 SQCGLLGSAGWCQYCKSSRGISKLQLPYACKLLFQELQ-SMNIVPRLTLQ 1093
>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1157
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 137/504 (27%), Positives = 203/504 (40%), Gaps = 135/504 (26%)
Query: 10 GIIPSHLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQ 53
G + +HL+ + G + Y SP QAIG N R+DTLL
Sbjct: 675 GAVVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLY 734
Query: 54 QLFYPQRPLFWILISDCLGRP--------------------EDSLVMNQASLE-----CG 88
+ YPQ+P+ + + ED+LV+N+ASL+ C
Sbjct: 735 FMVYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQ 794
Query: 89 VFRSES----------------YKAEVDNKDI------------QVKSRPSDDMLNFGK- 119
V R + + + +NK I +V SR + + K
Sbjct: 795 VVRKNTVQLKKYPNHTQDILAGMRVDENNKPIFPHQALGPDGLGEVGSRIFNGQVFANKC 854
Query: 120 IQSKSGDIVIG-----KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 174
+ + SGD +G + AE + K E + +V++S +D+ + V +RQ+
Sbjct: 855 VPTNSGDSTLGAQQEQRTAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQT- 913
Query: 175 NMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLE 208
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 914 ---RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIE 970
Query: 209 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 267
GK G +G + Y T F GG E +S++L G SG ++ C
Sbjct: 971 LISGKAGVLNGSLEYGTCF----GGSKLED----MSKILVEKGFSYSGKDMLYSGITGEC 1022
Query: 268 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 327
L ++ IF +YQ+ HM DK+ R G LT +P R R G
Sbjct: 1023 L--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 1068
Query: 328 GIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIK 381
G+ GEM+ DC+IA+GAS L ERL +V N + +C C S++++IK
Sbjct: 1069 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNNWCTTCKSSENVIK 1128
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1129 MTIPYAAKLLFQEL-LSMNIAPRL 1151
>gi|396477501|ref|XP_003840283.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
maculans JN3]
gi|312216855|emb|CBX96804.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
maculans JN3]
Length = 1257
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 130/483 (26%), Positives = 191/483 (39%), Gaps = 127/483 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I ++
Sbjct: 802 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 861
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
P ED+L++N+AS + G R + K V ++ + +
Sbjct: 862 YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVLKKHV--TPLKTYANGTS 919
Query: 113 DMLNFGKIQSK--------------------SGDIVI---------GKYAEIGADHSIKL 143
D +N G + S+ +GD + G + I D K
Sbjct: 920 DRINAGALNSENPSHQAIGLDGIAQVGARIEAGDAFLLKSIPQDTAGPASNIYKDKPEKY 979
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 201
K + V K ++ N+ G + +RQ+ LGDKFSS HGQKG G + Q
Sbjct: 980 KMPDCSYVDKACITENEAGTTLIKLLMRQT----RRPELGDKFSSRHGQKGTTGLIVQQE 1035
Query: 202 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 236
T +++E GK G G + Y T F G + +
Sbjct: 1036 DMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLRGTLEYGTAFG---GSRVED 1092
Query: 237 QHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 294
Q V + G SGIT ++ F F I +YQ
Sbjct: 1093 MSQVLVENGFSYTGKDYLTSGITGEAHQFYTF--------------------FGPI-YYQ 1131
Query: 295 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 354
+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1132 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMI 1191
Query: 355 KNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 406
+ A+ + Q G YC++C S I + +PY AKLL QEL S ++ +T+ +
Sbjct: 1192 SSDAHDVDVCEKCGQMGYSG-YCKLCESEKAIRRITMPYAAKLLIQELGSMNVKVTIGLE 1250
Query: 407 TQL 409
+
Sbjct: 1251 DEF 1253
>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
sclerotiorum]
Length = 938
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 172/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 554 SMILGICASIIPFPDHNQSPRNC--YQSAM-GKQAMGVFLTNFDVRMDTMANILYYPQKP 610
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 611 LATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 670
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A I D
Sbjct: 671 EKRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVTGADIIIGKTAPIAPDS 730
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE GLV +VLL++N +G F V +R + +GD
Sbjct: 731 EEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT----KIPQIGD 786
Query: 185 KFSSMHGQKGVLG--FLEQ------------------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G +++Q T A L+E L K +
Sbjct: 787 KFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 846
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF TE VS+LL G + G ++ + +
Sbjct: 847 GLEGDATPF--------TEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMM-------- 890
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 891 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938
>gi|348558605|ref|XP_003465108.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Cavia porcellus]
Length = 1079
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 186/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q S Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-SKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK E V D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVM 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F + + GD G G + + K E +V + + SN+ G F
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKF 808
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 809 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S +E + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSASE----YFGEMLKAAGYNFYGTER 922
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 923 LYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 968
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 969 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP 1028
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1029 PPSWSAMRNRKYNCTVCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|48477331|ref|YP_023037.1| DNA-directed RNA polymerase subunit B [Picrophilus torridus DSM 9790]
gi|48429979|gb|AAT42844.1| DNA-directed RNA polymerase subunit B [Picrophilus torridus DSM 9790]
Length = 1194
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 131/486 (26%), Positives = 206/486 (42%), Gaps = 95/486 (19%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ +IP + + + + + Q+IG P N IRVDT L YPQ P
Sbjct: 718 SMILGVVASLIPYPEHNSSPR---ITMASAMTKQSIGLPAANYRIRVDTRGHLLHYPQVP 774
Query: 62 LFWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
L + D + +P +D++VMN+AS+E G+ RS +Y AE
Sbjct: 775 LVKTKVMDFIKYNNKPAGQNFVVAIVSYQGYNIQDAIVMNKASIERGLGRSAFFRTYTAE 834
Query: 99 VDNKDIQVKSR---PSDDML-----NFGKIQSKSG-----------DIVIGK-----YAE 134
+ R P+ D+L + K +SG D+++GK + E
Sbjct: 835 EIRYPGGQEDRFEIPTHDVLGARAEEYYKNLDESGIIYPESEVNGSDVLVGKTSPPRFLE 894
Query: 135 IGADH---------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
AD S+ ++ E G V V L+ ++ V +R M + GDK
Sbjct: 895 ENADKLGPMRRRESSVTMRPNESGYVDNVFLTVSESNSRIVKVKVR----MDRTPQPGDK 950
Query: 186 FSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVI--------TE 236
F+S HGQKGV+G + P + + D L + ++ P + G V+ T
Sbjct: 951 FASRHGQKGVIGAV--VPQEDMPFTEDGIIPDLLFNPHSVPSRMTLGHVLEMMGAKVSTA 1008
Query: 237 QHQSFVSQLLNCIGARNSGITFIFKHY-FLFCLFECPMDWIAFICLVRSLIFTWITFYQQ 295
++ S + + G + K Y F E D I ++ IF + +YQ+
Sbjct: 1009 TGENIDSTIFD--GEPEKSLREELKKYGFSESGEEVMYDGITGRKF-KARIFIGVIYYQK 1065
Query: 296 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK 355
HM +K R+ G Q LT +P R R GG+ FGEM+ D LIAHGAS + +RL +
Sbjct: 1066 LHHMVANKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGASMVIKDRLLDQ 1125
Query: 356 NVANVIQRVVGGP---------------YCRICNSADDIIKANVPYGAKLLSQELSFSMG 400
+ ++ V G P C +C + +I Y KL+ ELS S+G
Sbjct: 1126 SDGTILY-VCGNPSCGHIAIYDFKRGTLKCPVCGNTGNIYPIETSYAFKLMRDELS-SLG 1183
Query: 401 ITLKFD 406
I ++ +
Sbjct: 1184 IIMRLE 1189
>gi|288931147|ref|YP_003435207.1| DNA-directed RNA polymerase subunit B [Ferroglobus placidus DSM
10642]
gi|288893395|gb|ADC64932.1| DNA-directed RNA polymerase subunit B [Ferroglobus placidus DSM
10642]
Length = 604
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 200/478 (41%), Gaps = 99/478 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G+ G IP + + + K Q++G P N +R DT L YPQ P
Sbjct: 129 SLIVGICTGSIPYPEHNASPRNTMGAAMIK---QSLGIPYANLPLRADTRGHLLHYPQIP 185
Query: 62 L-------------------FWILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
+ F + + G ED+L+ N+AS+E G+ RS +Y+AE
Sbjct: 186 IVTTDTQLEIKYDERPAGQNFVVAVVSYEGYNIEDALIFNKASIERGLGRSHFYRTYEAE 245
Query: 99 ----VDNKDIQVKSRPSD---------------DMLNFGKIQSKSGDIVIGKYA------ 133
++ + + PSD D L + + D++IGK +
Sbjct: 246 EIRYPGGQEDKFEIPPSDVNGYRGAEAYIHLDEDGLVVPETEVGPDDVLIGKTSPPRFLE 305
Query: 134 -----EIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+ + S+ ++ E G+V V L+ +++G A V +R LGD
Sbjct: 306 EPTRLEVSPQKRRETSVTMRSNESGIVDAVFLTLSENGAKLAKVRVRDQ----RIPELGD 361
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVS 243
KF+S HGQKGV+G + P + + D +++ +A P + G V+ +
Sbjct: 362 KFASRHGQKGVIGLI--VPEEDMPFTESGIVPDMIINPHAIPSRMTVGHVL-----EMIG 414
Query: 244 QLLNCIGARN-SGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
+ I AR G F + K+ F + E D I V + IF +
Sbjct: 415 GKIGAIEARRVDGTIFHGEKEEDLREALKKYGFSYTGKEVMYDGITGKRFV-AEIFVGVI 473
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+Y++ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L +R
Sbjct: 474 YYEKLYHMVSSKIHARSRGPVQILTRQPTEGRSRKGGLRFGEMERDVLIGHGAALLLKDR 533
Query: 352 L-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELS 396
L C +VA + YC++C+ ++ K + Y KLL EL
Sbjct: 534 LLEESDKVEVWVCGNCGHVATYDYK-RNTAYCKVCDDESNVHKIEMSYAFKLLLDELK 590
>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
Length = 1149
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 143/515 (27%), Positives = 212/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ IIPS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIIPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGADHS-------IKLKHTERGLVLK---------VLLSSNDDGKNF 165
KSG I I K + + ++ ++ E ++ + V++S +D+ +
Sbjct: 836 VKSGQIYINKSVPTNSTDAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVMNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|296421976|ref|XP_002840539.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636757|emb|CAZ84730.1| unnamed protein product [Tuber melanosporum]
Length = 434
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 183/442 (41%), Gaps = 102/442 (23%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP-------------------- 74
QAIG N +R+DTLL + YPQ+P+ + +
Sbjct: 4 QAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIQYDKLPAGQSAIVAVMSYSGYDI 63
Query: 75 EDSLVMNQASLE-----CGVFRSES-----YKAEVDNKDIQVKSRPSDDMLNFGKIQ--- 121
ED+LV+N+ASL+ C VFR S Y+ ++ +K S D N ++
Sbjct: 64 EDALVLNKASLDRGFGRCQVFRKYSTTLRKYQNGAADRIGDIKRELSKDPENPDELVPIR 123
Query: 122 -----SKSGDIVIGKYAEIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQ 172
G +G+ G D + K + + KVL+S+++ + V RQ
Sbjct: 124 KHAALQADGLAAVGEKISAGEVYYKDAPMTYKLHDHAYIDKVLVSTSESEQTLIKVLTRQ 183
Query: 173 SVNMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQL 206
+ LGDKFSS HGQKGV G + + T ++
Sbjct: 184 T----RRPELGDKFSSRHGQKGVCGIIARQEDMPFSDTGIIPDIIMNPHGFPSRMTVGKM 239
Query: 207 LEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFL 265
+E GK G G + Y T F G + + + V ++G ++ K +
Sbjct: 240 IELLAGKAGVLAGKLQYGTAFG---GSKVDDMAKILV----------DNGFSYSGKDFVT 286
Query: 266 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 325
+ ++ + IF +YQ+ HM +DK+ R G LT +P R R
Sbjct: 287 SGITGESLE---------AYIFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 337
Query: 326 FGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG----GPYCRICNSADDI 379
GG+ GEM+ DCLIA+GAS L ERL + + I V G +C C S+ +
Sbjct: 338 DGGLRLGEMERDCLIAYGASQLLLERLMLSSDVHEIDLCEVCGLMGHSNWCTTCQSSKGV 397
Query: 380 IKANVPYGAKLLSQELSFSMGI 401
+K +PY AKLL QEL SM +
Sbjct: 398 VKMKIPYAAKLLIQEL-LSMNV 418
>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS 8797]
Length = 1155
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 192/484 (39%), Gaps = 128/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 695 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTIELIN 754
Query: 73 RP--------------------EDSLVMNQASLECGVFRSES------------------ 94
ED+LV+N++S++ G R E+
Sbjct: 755 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYPNHTQDI 814
Query: 95 ---YKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-------------D 138
+ + +N+ I D L ++ SG + I K + +
Sbjct: 815 IGGMRVDENNERIWQHEALGPDGLGEVGMKLNSGQVYINKSVPTNSTEPFSGNTEAQYRE 874
Query: 139 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
+ + E + +V++S +D+ + V +RQS LGDKFSS HGQKGV G
Sbjct: 875 TPVIYRAPESSHIDQVMMSVSDNDQALIKVLLRQS----RRPELGDKFSSRHGQKGVCGI 930
Query: 199 LEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ Q T +++E GK G +G + Y T F G
Sbjct: 931 IVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGTLEYGTCFG---G 987
Query: 232 GVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ + + V Q N G SG+T EC +++ IF
Sbjct: 988 SKLEDMSKILVDQGFNYSGKDMLYSGVTG-----------EC----------LQAYIFFG 1026
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L
Sbjct: 1027 PIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLL 1086
Query: 350 ERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGIT 402
ERL +V N + +C C SA+++IK +PY AKLL QE LS ++
Sbjct: 1087 ERLMISSDAFEVDVCNKCGLMGYSGWCTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPR 1146
Query: 403 LKFD 406
L+ D
Sbjct: 1147 LRLD 1150
>gi|396081035|gb|AFN82654.1| DNA-directed RNA polymerase subunit B [Encephalitozoon romaleae
SJ-2008]
Length = 1046
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 129/463 (27%), Positives = 200/463 (43%), Gaps = 93/463 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + +YQ Q + QAIG P N RVD+ + + Y Q P+
Sbjct: 616 ILGILAGLTPYSDHNQSPRN--MYQCQ-MAKQAIGLPAYNIKARVDSSMYTINYLQSPIV 672
Query: 64 ----WILISD------CL--------GRPEDSLVMNQASLECGVFRSESYKAEVDNKDIQ 105
+ L+ D C+ ED+LV+++ S++ G+F YK E K
Sbjct: 673 RTKGYDLVKDYPVGVNCMVAVLSYTAYDMEDALVISKNSIDRGLFTGYVYKTE---KVSL 729
Query: 106 VKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNF 165
K +L+ GK + G ++ + G ++ K E G++ V + ND G+
Sbjct: 730 EKGHYFTYLLSVGK-GIERGSVLYRYVDQSGREYESKYYEAEGGIIDSVRVFDNDIGERC 788
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ--------------- 201
A +IR +V + +GDKFSS HGQKGV + F E
Sbjct: 789 ATFTIR----IVRNPSIGDKFSSRHGQKGVCSMHWPTVDMPFTESGYVPDIIINPHAFPS 844
Query: 202 --TPAQLLEAALGKGAC-DGLMSYATPFATS--TGGVITEQHQSFVSQLLNCIGARNSGI 256
T L+E+ GK C G + T F S +G + + ++ + L
Sbjct: 845 RMTIGMLIESIAGKVGCLSGSIQDGTAFEKSFFSGEDENGKEKEYLCEELQ--------- 895
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+H F + E PM R +F + +YQ+ HM DK + R TG T
Sbjct: 896 ----RHGFNYYGNE-PMYSGISGNEFRVDVFVGVVYYQRLKHMVGDKFQVRTTGPVVSTT 950
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER-LKCKNVANVIQRVVGGPYCRICNS 375
+P+ +K+ GGI FGEM+ D LI+HGAS L +R LKC + + + YC +C S
Sbjct: 951 QQPIGGKKKQGGIRFGEMERDALISHGASHLLQDRLLKCSD-GTIFE------YCGVCKS 1003
Query: 376 ------------ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
++D+ +PY K L EL +M I +K D
Sbjct: 1004 ILFTNNGDCVCGSNDLKIVEMPYVFKYLCYEL-LAMNIKVKID 1045
>gi|167044136|gb|ABZ08819.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1114
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 207/498 (41%), Gaps = 137/498 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQ--LFYPQ 59
S +LG IIP + + Y+S + Q++GF T P + T ++Q + YPQ
Sbjct: 637 SAILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHTMLYPQ 691
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA-- 97
P+ LG RP ED++V++++++E G+ R+ Y+
Sbjct: 692 TPIVTTRAMGLLGLEKRPAGQNCVVAVLPFDGYNIEDAIVLSKSAIERGLGRTLFYRIYE 751
Query: 98 --------------EVDNKDIQVKSRP--------SDDMLNFGKIQSKSGDIVIGK---- 131
E+ N D ++ DD + + + GDI+IGK
Sbjct: 752 AESKQYPGGMRDNFEIPNADDNLRGYKGEKSYRLLEDDGIVASESRVSGGDILIGKTSPP 811
Query: 132 -----YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
Y E+ D SI ++ +E G+V ++L+ + +G V IR +
Sbjct: 812 RFMEEYHELEGSGPYRRDTSIGVRPSETGVVDTIILTQSAEGGKMFKVRIRD----MRLP 867
Query: 181 CLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGKG 214
+GDKF+S HGQKGV+G L + T +LE+ GK
Sbjct: 868 EIGDKFASRHGQKGVVGLLAKAEDLPYTADGISPDVLINPHAFPSRMTVGMMLESITGKA 927
Query: 215 AC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
A G A+ F G + E V +L G + SG ++ + P+
Sbjct: 928 AAMRGRKVDASAF---VGEKVDE-----VKSVLEDAGFKYSGKEIMYDGR---TGKQFPV 976
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ +F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGE
Sbjct: 977 E-----------VFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGE 1025
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADD 378
M+ DC+IA+GAS L +RL +C VA ++ QR YCR+C+
Sbjct: 1026 MERDCIIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDIKQRRF---YCRVCDKKGK 1082
Query: 379 IIKANVPYGAKLLSQELS 396
+ +V Y KLL QE+S
Sbjct: 1083 VSSVSVAYAFKLLLQEMS 1100
>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1167
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 198/495 (40%), Gaps = 126/495 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N +R+D+LL + YPQ+PL
Sbjct: 700 ILGAVAGLIPYPHHNQSPRN--TYQCA-MGKQAIGAIAWNQLLRIDSLLYLMIYPQQPLV 756
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKAEV- 99
D +G ED+L++N+AS++ G R + Y +
Sbjct: 757 KTKTIDLIGYDKLPAGQNAIIAVMSFSGYDIEDALILNKASIDRGFGRCQVIRKYATTIK 816
Query: 100 ---------------DNKDI--QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD---- 138
+ D+ + ++ D + G+ + +SG I I K A+
Sbjct: 817 RYANGSYDRLEGPSRNEGDVAWKYEALEEDGLAGVGE-KIESGQIYINKQIPTNANDNTI 875
Query: 139 ------HSIKLKHT-------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
H + K + E G + K++L++ D + +RQ+ LGDK
Sbjct: 876 ATRIQQHELSWKASPMIYKSFEPGYIDKIMLTTTDSDQTLIKCLVRQT----RRPELGDK 931
Query: 186 FSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDG 218
FSS HGQKGV G + Q T +++E GK G G
Sbjct: 932 FSSRHGQKGVCGLIVQQEDMPFDQNGITPDIIMNPHGFPSRMTVGKMIELLAGKAGVLSG 991
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFECPMDWI 276
+ Y T F G I + Q + + G SGIT
Sbjct: 992 TLQYGTAFG---GSKIDDMSQILIENGYSYSGKDELTSGITG------------------ 1030
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+
Sbjct: 1031 ---ESLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAILTRQPTEGRSRDGGLRLGEMER 1087
Query: 337 DCLIAHGASGNLHERLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKL 390
DCLIA+GAS L ERL + A + ++G +C C S D++K +PY AKL
Sbjct: 1088 DCLIAYGASQLLLERLMLSSDAFKVDICEACGLIGYKGWCNRCKSTKDVVKLTIPYAAKL 1147
Query: 391 LSQELSFSMGITLKF 405
L QEL SM I K
Sbjct: 1148 LFQEL-ISMNIIPKL 1161
>gi|76253769|ref|NP_956812.2| DNA-directed RNA polymerase I subunit RPA2 [Danio rerio]
gi|66911319|gb|AAH97040.1| Zgc:66298 [Danio rerio]
gi|182890886|gb|AAI65683.1| Zgc:66298 protein [Danio rerio]
Length = 1132
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 130/471 (27%), Positives = 185/471 (39%), Gaps = 110/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCL---GRP-------- 74
+YQ Q S Q +GFP + R D L +L PQ PL + D P
Sbjct: 684 MYQCQM-SKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVA 742
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKS--------RPSD----- 112
ED++++N++S E G YK E+ + +VK +P D
Sbjct: 743 VISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMG 802
Query: 113 ----DMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFA 166
D L F K GD G + G H K+ E +V + + SN+ G F
Sbjct: 803 KLDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFK 862
Query: 167 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------------- 203
+ + V + +GDKF+S HGQKG+L L E P
Sbjct: 863 RICVTSRVP--RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSR 920
Query: 204 ---AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 259
L+E+ GK A GL ATPF S E +LL G G
Sbjct: 921 MTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEH----FGELLKAAGYNYYGTE-- 974
Query: 260 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 319
+ Y E D IF + +YQ+ HM DK + R TG+ +T +P
Sbjct: 975 -RLYSGLSGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQP 1022
Query: 320 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP- 368
+ R GGI FGEM+ D L+AHG S LH+RL C + +++ ++ P
Sbjct: 1023 MGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSTLLEKPP 1082
Query: 369 -----------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
C +CN +D I +VPY K EL+ +M I +K D +
Sbjct: 1083 PNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELA-AMNIKIKLDVK 1132
>gi|327401233|ref|YP_004342072.1| DNA-directed RNA polymerase subunit B [Archaeoglobus veneficus
SNP6]
gi|327316741|gb|AEA47357.1| DNA-directed RNA polymerase subunit B [Archaeoglobus veneficus
SNP6]
Length = 604
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 196/476 (41%), Gaps = 89/476 (18%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G+ G IP + + + K Q++G P N R DT L YPQ P
Sbjct: 129 SLIVGICTGSIPYPEHNASPRNTMGAAMIK---QSLGLPYANLAWRTDTRGHLLHYPQIP 185
Query: 62 L-------------------FWILISDCLG-RPEDSLVMNQASLECGVFRSESYKA---- 97
+ F + + G ED+L+ N+ S++ G+ RS ++
Sbjct: 186 IVTTDTQLEIKFDERPAGQNFVVAVISYEGYNIEDALIFNKGSIDRGLGRSHFFRTYETE 245
Query: 98 ------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA------ 133
E+ DI + + +D L F + + D++IGK +
Sbjct: 246 EMRYPGGQEDRFEIPGADISGFRGAEAYAHLDEDGLVFPETEVGPDDVLIGKTSPPRFLE 305
Query: 134 ---EIG------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G + SI ++ E+G+V V L ++ G A V +R + LGD
Sbjct: 306 EPTELGISPQKRRETSITMRSNEKGIVDAVFLMQSESGSKLAKVRVRD----LRIPELGD 361
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGV---ITEQHQS 240
KF+S HGQKGV+G + P + + D +++ +A P + G V I + S
Sbjct: 362 KFASRHGQKGVIGLI--VPEEDMPFTESGIVPDMIVNPHAIPSRMTVGHVLEMIGGKVGS 419
Query: 241 FVSQLLNCI---GARNSGITFIFKHY-FLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 296
+ ++ G + + I K Y F E D I IF + +YQ+
Sbjct: 420 LEGRRIDATVFYGEKEKDLREILKAYGFSHTGKEVMYDGITGKRFTVD-IFVGVIYYQKL 478
Query: 297 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---- 352
HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L +RL
Sbjct: 479 YHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALLLKDRLLEES 538
Query: 353 ---------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
C +VA R YC+IC+ +I + + Y KLL EL M
Sbjct: 539 DKVEVYVCGNCGHVATYDYR-RNIAYCKICDDDSNIHRVEMSYAFKLLLDELKSMM 593
>gi|399950027|gb|AFP65683.1| second-largest subunit of RNA polymerase III [Chroomonas
mesostigmatica CCMP1168]
Length = 1096
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 125/432 (28%), Positives = 184/432 (42%), Gaps = 97/432 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWIL-------------ISDCL-------GRP 74
QAIG + N N R DT+L L YPQ+PL I+ C+
Sbjct: 682 QAIGSISYNQNQRCDTVLSILLYPQKPLVRTKTVYFSGNNRLTSGINTCVCIMSFSGYDI 741
Query: 75 EDSLVMNQASLECGVFRS---------------ESYKAEVDNKDIQVKSRPSDDMLNFGK 119
EDS++MN++S E G+FRS E NK + ++ SD++ G
Sbjct: 742 EDSIIMNRSSTERGLFRSFVMRKHKILVKDFLSEKKSLTTTNKKF-LNNKKSDNIQKVGD 800
Query: 120 IQSKSGDIVIGKYAEIGADHSIKLKHTERG--LVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+ S ++ + ++G ++ H E +V K+++SSN FA + IRQ +
Sbjct: 801 LFS---NVTSNSFYDLGQIILSQVSHKEISGEMVEKIIISSNFRELFFAKLVIRQ----I 853
Query: 178 HSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAAL 211
+GDKFSS HGQKG+ GFL T ++ E
Sbjct: 854 RKPEVGDKFSSRHGQKGICGFLCFQKDIPFSNDGVIPDLIMNPHGFPSRMTIGKMFELLN 913
Query: 212 GKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 271
GK + +Y+ F T + E + V + L +G + G F F
Sbjct: 914 GKNS-----AYSGNFKDGTAFI--EPKKKAVDRNLRKLGFNSKGNDFFF----------- 955
Query: 272 PMDWIAFIC--LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
+ I L++ IF+ FYQ+ HM +DK+ R G PLT +P+ R + GG
Sbjct: 956 -----SGISGQLLKMEIFSGPVFYQKLKHMVKDKIHARTRGPRSPLTKQPIEGRSKEGGQ 1010
Query: 330 EFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAK 389
FGEM+ DCLI++GAS ++ ERL + I + II +PY K
Sbjct: 1011 RFGEMERDCLISYGASDSIIERLIFSSDLLFINIDLDTGLPTYKEINSRIISIRIPYACK 1070
Query: 390 LLSQELSFSMGI 401
LL QEL SM I
Sbjct: 1071 LLFQELQ-SMNI 1081
>gi|348558603|ref|XP_003465107.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Cavia porcellus]
Length = 1135
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 186/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q S Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-SKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK E V D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVM 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F + + GD G G + + K E +V + + SN+ G F
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S +E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSASE----YFGEMLKAAGYNFYGTER 978
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 979 LYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1085 PPSWSAMRNRKYNCTVCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|40645025|emb|CAD92461.1| RNA polymerase II [Valeriana officinalis]
Length = 364
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 152/379 (40%), Gaps = 108/379 (28%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFW------------------ILISDCLG--RP 74
QA+G TN R+DTL L+YPQ+PL I+ C
Sbjct: 12 QAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ 71
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY+ E VK RP D
Sbjct: 72 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDD 131
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSN 159
D L + D++IGK I D HS L+H+E G+V +VLL++N
Sbjct: 132 DGLAPAGTRVSGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTSLRHSETGMVDQVLLTTN 191
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 192 ADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 247
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 248 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 299
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 300 MRGFETMYNGHTGRRLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGPV 345
Query: 313 QPLTGRPVADRKRFGGIEF 331
Q LT +P R R GG+ F
Sbjct: 346 QILTRQPAEGRSRDGGLRF 364
>gi|124504400|gb|AAI28811.1| Zgc:66298 [Danio rerio]
Length = 1132
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 130/471 (27%), Positives = 185/471 (39%), Gaps = 110/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCL---GRP-------- 74
+YQ Q S Q +GFP + R D L +L PQ PL + D P
Sbjct: 684 MYQCQM-SKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVA 742
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKS--------RPSD----- 112
ED++++N++S E G YK E+ + +VK +P D
Sbjct: 743 VISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMG 802
Query: 113 ----DMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFA 166
D L F K GD G + G H K+ E +V + + SN+ G F
Sbjct: 803 KLDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFK 862
Query: 167 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------------- 203
+ + V + +GDKF+S HGQKG+L L E P
Sbjct: 863 RICVTSRVP--RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSR 920
Query: 204 ---AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 259
L+E+ GK A GL ATPF S E +LL G G
Sbjct: 921 MTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEH----FGELLKAAGYNYYGTE-- 974
Query: 260 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 319
+ Y E D IF + +YQ+ HM DK + R TG+ +T +P
Sbjct: 975 -RLYSGLSGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQP 1022
Query: 320 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP- 368
+ R GGI FGEM+ D L+AHG S LH+RL C + +++ ++ P
Sbjct: 1023 MGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKPP 1082
Query: 369 -----------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
C +CN +D I +VPY K EL+ +M I +K D +
Sbjct: 1083 PNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELA-AMNIKIKLDVK 1132
>gi|400597534|gb|EJP65264.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
Length = 1157
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 133/494 (26%), Positives = 199/494 (40%), Gaps = 118/494 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 682 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRS------ 92
+++S ED+LV+N+ S++ C VFR
Sbjct: 739 ISKTIQLVNYDKLPAGQNATVVVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYTTELQ 798
Query: 93 -------ESYKAEVDNKDIQVKSRPS------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
E V+ D + R DD L + SG +I K +
Sbjct: 799 KYPNGRRERIGDPVNEGDGDQRKRTEKHKALDDDGLAMVGGRVFSGQSMIKKETPLDLTT 858
Query: 137 ------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D ++ + + + KV++S + V RQ+ LGD
Sbjct: 859 TGIGLDRGSSDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQT----RRPELGD 914
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH---- 238
KFSS HGQKGV+G + + PFA + T +I H
Sbjct: 915 KFSSRHGQKGVVGIIVE-------------------HEDMPFADNGLTPDIIMNPHGFPS 955
Query: 239 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL----------------- 281
+ V +LL C+ + S I + F P++ ++ + L
Sbjct: 956 RMTVGKLLECLTGKASIIHGRPDYGFGDAFRSHPLEEMSQVLLDHGFSWEGKDYFTSGLT 1015
Query: 282 ---VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ + IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DC
Sbjct: 1016 GEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDC 1075
Query: 339 LIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLS 392
LIA+GAS L ERL + V ++ Q+ + G YC+ C S ++ K +PY AKLL
Sbjct: 1076 LIAYGASQLLLERLMISSDGVVIDICQQCGLFGYKGYCQTCKSTREVTKMTMPYAAKLLV 1135
Query: 393 QEL-SFSMGITLKF 405
QEL S ++G+ L+
Sbjct: 1136 QELISMNVGVRLQL 1149
>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
cucurbitacearum]
Length = 940
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 172/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 556 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQ 610
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 611 KPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 670
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I A
Sbjct: 671 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAA 730
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 731 DAQEMGQKTSLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 786
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 787 GDKFASRHGQKGTIGITYRHEDMPFTRDGVTPDLVINPHAIPSRMTIAHLVECLLSKVGA 846
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q +S+LL G + G ++ + +
Sbjct: 847 ITGREGDATPFTD----VTVDQ----ISELLEDAGYQKRGFEIMYNGHTGKKM------- 891
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 892 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 940
>gi|334312104|ref|XP_003339712.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Monodelphis domestica]
Length = 1079
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 191/476 (40%), Gaps = 123/476 (25%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG 125
ED++++N+AS E G YK E+ D+ K + DD L FG K G
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKTEL--IDLSEKIKQGDDSLVFG---VKPG 743
Query: 126 DI-VIGKYAEIGADHSIKL-----------------------KHTERGLVLKVLLSSNDD 161
D+ V+ K G H L K+ E LV + + SND
Sbjct: 744 DLRVLQKLDSDGLPHIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDS 803
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 203
G N SI ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 804 G-NGKFKSICITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPH 862
Query: 204 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGAR 252
L+E+ GK A GL ATPF S E++ + + ++L G
Sbjct: 863 GFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFS------EENSALGYFGEMLKAAGYN 916
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ I+ + L + IF + +YQ+ HM DK + R TG+
Sbjct: 917 FYGTERLYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGAR 962
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQ 362
+T +P+ R GGI FGEM+ D L+AHG S LH+RL C +++
Sbjct: 963 DKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLS 1022
Query: 363 RVVGGP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
++ P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1023 PLLEKPPPSWSAMRNRKYNCTVCNQSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|410610275|gb|AFV74906.1| RNA polymerase II second largest subunit, partial [Thesium
chinense]
Length = 566
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 164/409 (40%), Gaps = 111/409 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 187 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 243
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 244 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 303
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK + I D
Sbjct: 304 EKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDE 363
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 364 SQGQSSRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 419
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 420 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 479
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 480 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 520
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG
Sbjct: 521 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 566
>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1108
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 131/486 (26%), Positives = 198/486 (40%), Gaps = 119/486 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G+IP+ + + YQS QAIG N R D +L + YP +P+
Sbjct: 634 LLGVVAGLIPNPHHNQSPRN--TYQS-AMGKQAIGTVAINQYSRFDGMLYTMVYPHKPMV 690
Query: 64 WILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYK------- 96
D + ED++V+N+AS++ G R K
Sbjct: 691 KTRTLDLINFDNIPAGQNACIAVMSYSGYDIEDAVVLNKASVDRGFGRCMVLKKSQASVR 750
Query: 97 ---------------------AEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGK---- 131
E D + + + D + G++ ++G +++ K
Sbjct: 751 RYQNGTMDRTCGAPDPSAFPSGEEDKRYARYRGIDKDGLCMVGELM-ENGTVMVNKESPT 809
Query: 132 --------YAEIGADHS-IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
A++ +S + + + V +VL+SSN++ + V +RQ V L
Sbjct: 810 DTSTPVERLAQVSYKYSGMSYRSSAPSYVDRVLISSNENEQFLIKVMLRQ----VRRPEL 865
Query: 183 GDKFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GA 215
GDKF+S HGQKGV G F EQ T +L+E +GK G
Sbjct: 866 GDKFASRHGQKGVCGLIVPQVDMPFNEQGFPPDLIMNPHGFPSRMTVGKLIELLVGKAGV 925
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
+G +YA+ F G T Q S L I RN G+ + K F + P+D
Sbjct: 926 FEGRQAYASAFGEEFGSTDTVQ-----SAELALI--RN-GLNYTGKDIFYSGVNGAPLD- 976
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ IF+ FYQ+ HM DK+ R+ G LT +P R R GG+ GEM+
Sbjct: 977 --------AYIFSGPVFYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEME 1028
Query: 336 CDCLIAHGASGNLHERLK------CKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAK 389
DCLIA+GAS + ERL +V + +C+ C S + + +PY K
Sbjct: 1029 RDCLIAYGASNLIMERLMHSSDAFSASVCMTCGLLQYQNWCQYCRSGEKVSDIRLPYACK 1088
Query: 390 LLSQEL 395
LL QEL
Sbjct: 1089 LLFQEL 1094
>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 195/489 (39%), Gaps = 131/489 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 691 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 750
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN--------KDI 104
P ED+LV+N+AS++ G R + + N KD+
Sbjct: 751 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDV 810
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSI---------- 141
R + D L ++ ++G + + K A S+
Sbjct: 811 VSGMRVDEQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQ 870
Query: 142 ----------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHG 191
+ E + +V++S +D+ + V +RQ+ LGDKFSS HG
Sbjct: 871 NVESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQT----RRPELGDKFSSRHG 926
Query: 192 QKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYAT 224
QKGV G + Q T +++E GK G +G + Y T
Sbjct: 927 QKGVCGIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGT 986
Query: 225 PFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRS 284
F GG E +S++L G SG ++ CL ++
Sbjct: 987 CF----GGSKLED----MSEILVKNGFNYSGKDMLYSGITGECL--------------QA 1024
Query: 285 LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 344
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GA
Sbjct: 1025 YIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGA 1084
Query: 345 SGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE-LSF 397
S L ERL +V N + +C C S++++IK +PY AKLL QE LS
Sbjct: 1085 SQLLLERLMLSSDAFEVDVCNNCGLMGYNSWCTSCKSSENVIKMTIPYAAKLLFQELLSM 1144
Query: 398 SMGITLKFD 406
++ LK D
Sbjct: 1145 NIAPRLKLD 1153
>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
Length = 1143
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 197/481 (40%), Gaps = 126/481 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 683 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 742
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEV--------DNKDI 104
P ED+LV+N++S++ G R E+ + +DI
Sbjct: 743 YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTAVLKRYPNHTQDI 802
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI------KLK 144
Q KS D + G ++ SG I I K A + + +
Sbjct: 803 IGGMRVNENGEPIWQHKSLGPDGLGEVG-MKLDSGQIYINKSVPTNASEGVLTQTQSQYR 861
Query: 145 HT-------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
T E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 862 ETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCG 917
Query: 198 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 230
+ Q T +++E GK G +G + Y T F
Sbjct: 918 IIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGSLEYGTCF---- 973
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
GG E +SQ+L G SG ++ CL ++ IF
Sbjct: 974 GGSKLED----MSQILVDNGFNYSGKDMLYSGVTGECL--------------QAYIFFGP 1015
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L E
Sbjct: 1016 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1075
Query: 351 RLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
RL + A ++ ++G +C C SA+ I K ++PY AKLL QEL SM I +
Sbjct: 1076 RLMTSSDAFEVEVCEKCGLMGYSGWCTTCRSAEHINKMSIPYAAKLLFQEL-LSMNIAPR 1134
Query: 405 F 405
Sbjct: 1135 L 1135
>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 195/489 (39%), Gaps = 131/489 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 691 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 750
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN--------KDI 104
P ED+LV+N+AS++ G R + + N KD+
Sbjct: 751 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDV 810
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSI---------- 141
R + D L ++ ++G + + K A S+
Sbjct: 811 VSGMRVDEQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQ 870
Query: 142 ----------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHG 191
+ E + +V++S +D+ + V +RQ+ LGDKFSS HG
Sbjct: 871 NVESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQT----RRPELGDKFSSRHG 926
Query: 192 QKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYAT 224
QKGV G + Q T +++E GK G +G + Y T
Sbjct: 927 QKGVCGIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGT 986
Query: 225 PFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRS 284
F GG E +S++L G SG ++ CL ++
Sbjct: 987 CF----GGSKLED----MSEILVKNGFNYSGKDMLYSGITGECL--------------QA 1024
Query: 285 LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 344
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GA
Sbjct: 1025 YIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGA 1084
Query: 345 SGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE-LSF 397
S L ERL +V N + +C C S++++IK +PY AKLL QE LS
Sbjct: 1085 SQLLLERLMLSSDAFEVDVCNNCGLMGYNSWCTSCKSSENVIKMTIPYAAKLLFQELLSM 1144
Query: 398 SMGITLKFD 406
++ LK D
Sbjct: 1145 NIAPRLKLD 1153
>gi|126303601|ref|XP_001373893.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Monodelphis domestica]
Length = 1135
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 191/476 (40%), Gaps = 123/476 (25%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG 125
ED++++N+AS E G YK E+ D+ K + DD L FG K G
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKTEL--IDLSEKIKQGDDSLVFG---VKPG 799
Query: 126 DI-VIGKYAEIGADHSIKL-----------------------KHTERGLVLKVLLSSNDD 161
D+ V+ K G H L K+ E LV + + SND
Sbjct: 800 DLRVLQKLDSDGLPHIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDS 859
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 203
G N SI ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 860 G-NGKFKSICITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPH 918
Query: 204 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGAR 252
L+E+ GK A GL ATPF S E++ + + ++L G
Sbjct: 919 GFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFS------EENSALGYFGEMLKAAGYN 972
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ I+ + L + IF + +YQ+ HM DK + R TG+
Sbjct: 973 FYGTERLYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQ 362
+T +P+ R GGI FGEM+ D L+AHG S LH+RL C +++
Sbjct: 1019 DKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLS 1078
Query: 363 RVVGGP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
++ P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1079 PLLEKPPPSWSAMRNRKYNCTVCNQSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
tenuis ATCC 10573]
Length = 1165
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 194/486 (39%), Gaps = 130/486 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 701 GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 760
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSES------------- 94
P ED+LV+N+AS++ C V R +
Sbjct: 761 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKNTITLKRYPNHTKDI 820
Query: 95 ---YKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI---------- 141
+ + +N+ I S D L ++ ++G + + K A ++
Sbjct: 821 LSGMRVDENNEPIPPHSSLGPDGLGEVGMKLENGQVYVNKCVPTNAGETVLNGPGANEQP 880
Query: 142 ---------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
K E V +V++S +D+ + V +RQ+ LGDKFSS HGQ
Sbjct: 881 AESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQ 936
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV G + Q T +++E GK G +G + Y T
Sbjct: 937 KGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTC 996
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG + +S++L G SG ++ CL ++
Sbjct: 997 F----GGSDLQD----MSEILVQNGFNYSGKDMLYSGITGECL--------------QAY 1034
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1035 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1094
Query: 346 GNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL +V N + +C CNS++ +IK +PY AKLL QEL SM
Sbjct: 1095 QLLLERLMLSSDAFEVDVCNKCGLMGHNNWCTSCNSSEHVIKMTIPYAAKLLFQEL-ISM 1153
Query: 400 GITLKF 405
I +
Sbjct: 1154 NIAPRL 1159
>gi|410610277|gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
Length = 568
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 165/410 (40%), Gaps = 111/410 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 187 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 243
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 244 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 303
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK + + D
Sbjct: 304 EKKMGTLVKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPMAQDE 363
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 364 SQGQTARYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 419
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 420 SSRHGQKGTIGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 479
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 480 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRLT---------- 521
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+
Sbjct: 522 ----AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 567
>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
Length = 1142
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 134/480 (27%), Positives = 196/480 (40%), Gaps = 124/480 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 682 GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 741
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSES------------------ 94
P ED+LV+N+AS++ G R E+
Sbjct: 742 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQDI 801
Query: 95 ---YKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI----KLKHTE 147
+ + +N I D L ++ SG I I K A S+ + ++ E
Sbjct: 802 IGGMRVDENNNPIWQHEALGPDGLGEVGVKVNSGQIYINKSVPTNASDSVLTSTQSQYKE 861
Query: 148 RGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
+V + V++S +++ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 862 TPVVYRSPVPSHIDQVMMSVSENDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGI 917
Query: 199 L--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ T +++E GK G +G + Y T F G
Sbjct: 918 IVNHEDMPFNDEGISPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCF----G 973
Query: 232 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
G E +SQ+L G SG ++ CL ++ IF
Sbjct: 974 GSKLED----MSQILVENGYNYSGKDMLYSGVTGECL--------------QAYIFFGPI 1015
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ER
Sbjct: 1016 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1075
Query: 352 LKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
L + A +V + ++G +C C SA+ I+K +PY AKLL QEL +M I +
Sbjct: 1076 LMISSDAFEVDVCHKCGLMGYSGWCTTCKSAEFIVKMTIPYAAKLLFQEL-LAMNIAPRL 1134
>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
Length = 1131
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 128/482 (26%), Positives = 191/482 (39%), Gaps = 119/482 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + K + AIG+ N R+DTLL + YPQ+P+
Sbjct: 664 LLGACAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLN---RIDTLLYLMVYPQKPMV 720
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES--YK 96
+ +G ED+LVMN ASL+ C V R +S +
Sbjct: 721 STKTIELIGYDKLPAGQNAMVAVMSFSGYDIEDALVMNCASLDRGFGRCQVMRKQSTVLR 780
Query: 97 AEVDNKDIQVKSRPSDD----MLNFGKIQS----------KSGDIVIGKYAEIGADHS-- 140
+ ++ P ++ + F +++ + GD+ I K A+ +
Sbjct: 781 KYANGTFDRLADAPVNEHGEPLRRFEALEADGISGAGERLEPGDVYINKQIPTNANDNSA 840
Query: 141 --------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
+ K G + +VL+S D + IRQ+ LGDKF
Sbjct: 841 GTMLNSAITYKNAPLSYKSPVEGYIDQVLISDTDSDQTLVKSLIRQT----RRPELGDKF 896
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGL 219
SS HGQKGV+G + T +++E GK G G
Sbjct: 897 SSRHGQKGVIGLIVPQADMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLRGT 956
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
Y T F GG E +S++L G G K Y + P++
Sbjct: 957 QEYGTAF----GGSKVED----MSRILVEHGYHYGG-----KEYMTSGMTGEPLE----- 998
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ ++ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCL
Sbjct: 999 ----AYVYFGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCL 1054
Query: 340 IAHGASGNLHERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQ 393
I +GA+ L ERL + A V+ ++G YC C S+ ++K VPY KLL Q
Sbjct: 1055 IGYGATQLLLERLMVSSDAFVVNACEECGLLGYNGYCGYCKSSKHVVKLTVPYATKLLFQ 1114
Query: 394 EL 395
EL
Sbjct: 1115 EL 1116
>gi|282163887|ref|YP_003356272.1| DNA-directed RNA polymerase subunit B' [Methanocella paludicola
SANAE]
gi|282156201|dbj|BAI61289.1| DNA-directed RNA polymerase subunit B' [Methanocella paludicola
SANAE]
Length = 604
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 132/511 (25%), Positives = 204/511 (39%), Gaps = 141/511 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG++ G+IP H + +TM ++ QS +G T+N +R DT L Y
Sbjct: 128 SLILGIAAGMIPYPEHNASPRVTMGAGMVKQS-------LGVSTSNQKLRPDTRGHFLHY 180
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYK- 96
PQ + + + RP ED+LV N+ S+E G+ RS ++
Sbjct: 181 PQEGIVSTQTARSINFDQRPSGQNFVVAVLSYEGYNIEDALVFNKGSIERGLGRSHFFRT 240
Query: 97 --------------------AEVDN-KDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYA-- 133
AEV ++ + S +D L + + D++IGK +
Sbjct: 241 TEGEERRYPGGQEDTFEVPDAEVRGARESEFYSMLDEDGLVNPETEVGPNDVLIGKTSPP 300
Query: 134 -------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
++G + S+ ++ E+G+V V+L+ +G A V R
Sbjct: 301 RFLEEPTDLGGITPLKRRETSVTMRSNEKGIVDTVILTETQNGSRLAKVRTRDQ----RV 356
Query: 180 ACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK 213
LGDKF+S HGQKGV+G + Q T +LE GK
Sbjct: 357 PELGDKFASRHGQKGVIGLIAQQEDMPFTENGMVPDLIINPHAIPSRMTIGHVLETIGGK 416
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
G+ +G T F T + ++ + F G + K F
Sbjct: 417 IGSLEGRFVDGTAFNNETEDELRKEFKKF-------------GFSHTGKEVFY------- 456
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
D I + + IF + YQ+ HM K+ R+ G Q LT +P R R GG+ FG
Sbjct: 457 -DGITG-QRITADIFVGVILYQKLYHMVSSKMHARSRGPVQVLTRQPTEGRAREGGLRFG 514
Query: 333 EMKCDCLIAHGASGNLHERL----------KCKNVANVI-----QRVVGGPYCRICNSAD 377
EM+ D +I HGA+ L ERL C N V +R+V YC C +
Sbjct: 515 EMERDVMIGHGAAMALKERLLDESDKVFEYVCNNCGMVATEDKKRRLV---YCPNCGADT 571
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
+I K + Y KLL E+ ++GI + D +
Sbjct: 572 NIYKVEMSYAFKLLLDEMK-ALGIAPRLDLE 601
>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
Length = 942
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 171/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 558 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQ 612
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+A
Sbjct: 613 KPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 672
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I
Sbjct: 673 EQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAT 732
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 733 DAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 788
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K GA
Sbjct: 789 GDKFASRHGQKGTIGITYRQEDMPFSKEGLTPDLIINPHAIPSRMTIAHLVECLLSKVGA 848
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF V +Q VSQLL G + G ++ + +
Sbjct: 849 ITGQEGDATPFT----DVTVDQ----VSQLLEDAGYQKRGFEIMYNGHTGKKM------- 893
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 894 -------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 942
>gi|159119582|ref|XP_001710009.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia ATCC 50803]
gi|157438127|gb|EDO82335.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
Length = 1238
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 137/506 (27%), Positives = 199/506 (39%), Gaps = 126/506 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + K + AI F N R +T + L YPQ+PL
Sbjct: 759 LLGYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAF---NQLERFETAMFLLDYPQQPLT 815
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYK-- 96
I G ED+L++N+ +++ C ++RS S +
Sbjct: 816 STKILKLTGYERLPAGQNATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSVSTELN 875
Query: 97 ----AEVDN-KDIQVKSRPSDDMLNFGKIQS-------------KSGDIVIGK------- 131
VD KDI + P D + + + K+GDIVI K
Sbjct: 876 SIGSKSVDGIKDILLGP-PKDHLKQYEGYHAIEDDGLCAVGAHLKTGDIVINKGRHITNI 934
Query: 132 ----------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
+ I A S+K V KVL+++N DG V R+
Sbjct: 935 PGLSDGTEATASLIKAPESLKSPLETITYVDKVLVTTNGDGNMLIKVLTREP----RRPE 990
Query: 182 LGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGA 215
+GDKFSS HGQKGV G + T A+LLE K
Sbjct: 991 VGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSG 1050
Query: 216 C-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
C G + T F T T ++F+++L + + R +G ++ K L D
Sbjct: 1051 CFRGEQTDGTCFRTKT-------DETFLAELYDSL--RVAGFSYSGKDVLYSGLTG---D 1098
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
I IF +YQ+ HM +DK+ R TG LT +P R+ GG+ GEM
Sbjct: 1099 VIPV------YIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEM 1152
Query: 335 KCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKANV 384
+ DC I++GAS L ER C+ G +C C S D++K +
Sbjct: 1153 ERDCAISYGASALLLERFMLSSDDFLAYVCETCGLFSYEKNGVLWCPTCQSGKDVVKIRI 1212
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKL+ QEL SMG+ ++ + S
Sbjct: 1213 PYAAKLMIQEL-ISMGVLVRMQLEDS 1237
>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
Length = 1148
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 191/481 (39%), Gaps = 126/481 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 688 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 747
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKA--------------- 97
P ED+LV+N+ASL+ G R E+ +
Sbjct: 748 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCETRRKTTTVLKRYPNHTQDI 807
Query: 98 ----EVDNKD---IQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA------------- 137
VD K Q K+ D + G ++ SG I I K +
Sbjct: 808 IGGMRVDEKGEPIWQHKALGPDGLGEVG-MKLDSGQIYINKSVPTNSTDAFNGAAQASYR 866
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
+ + + E + +V++S +D+ + V +RQ LGDKFSS HGQKGV G
Sbjct: 867 ETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQH----RRPELGDKFSSRHGQKGVCG 922
Query: 198 FL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATST 230
+ T +++E GK G +G + Y T F
Sbjct: 923 IIVKQEDMPFNDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCF---- 978
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
GG E +S++L G SG ++ CL ++ IF
Sbjct: 979 GGSKLED----MSKILVEKGFNYSGKDMLYSGITGECL--------------QAYIFFGP 1020
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L E
Sbjct: 1021 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1080
Query: 351 RLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
RL + A + +C C SA+++IK +PY AKLL QEL SM I +
Sbjct: 1081 RLMISSDAFEVDVCAKCGLMGYSGWCTTCKSAENVIKMTIPYAAKLLFQEL-LSMNIAPR 1139
Query: 405 F 405
Sbjct: 1140 L 1140
>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1149
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 142/515 (27%), Positives = 212/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ I+PS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGADHS-------IKLKHTERGLVLK---------VLLSSNDDGKNF 165
+SG I I K + + ++ ++ E ++ + V++S +D+ +
Sbjct: 836 VQSGQIYINKSVPTNSADAPNPNIVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQS LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQS----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVMNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
Length = 1158
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 137/501 (27%), Positives = 202/501 (40%), Gaps = 124/501 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 LLGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAHNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS++ C VFR Y E
Sbjct: 740 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRK--YTTE 797
Query: 99 VDNKDIQVKSRPSDD--------MLNFGKIQSKSGD--IVIGKYAEIGA----------- 137
+ + R D M K ++ D V+G+ G
Sbjct: 798 LQKYPNGRRERIGDPVNEIENGVMRRIKKHEALDADGLAVVGQRIHSGEAMVKKETPLDM 857
Query: 138 ---------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D ++ + + + KV++S + V RQ+ L
Sbjct: 858 TTTGIGLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPEL 913
Query: 183 GDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGA- 215
GDKFSS HGQKGV+G + T +LLE GK +
Sbjct: 914 GDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASI 973
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G Y F + EQ VS++L + G ++ K YF + P++
Sbjct: 974 VHGRKEYG--FGDAFRSHPVEQ----VSKVLV-----DHGFSWEGKDYFTSGITGEPLE- 1021
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+ IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM+
Sbjct: 1022 --------AYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEME 1073
Query: 336 CDCLIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAK 389
DCLIA+GAS L ERL + + ++ Q+ + G YC C S ++ K +PY AK
Sbjct: 1074 RDCLIAYGASQLLLERLMLSSDGVMIDICQQCGLFGYRGYCGTCKSTREVTKMQMPYAAK 1133
Query: 390 LLSQEL-SFSMGITLKFDTQL 409
LL QEL S ++G+ L+ + +
Sbjct: 1134 LLVQELISMNVGVRLQLEDEF 1154
>gi|351699694|gb|EHB02613.1| DNA-directed RNA polymerase I subunit RPA2 [Heterocephalus glaber]
Length = 1129
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 185/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q S Q +GFP R D L +L PQ PL + D
Sbjct: 680 MYQCQM-SKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 738
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDN------------------KDIQVK 107
ED++++N++S E G YK E N D ++
Sbjct: 739 VISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEFINLSEKFKQGADSLVFGVKPGDPRIM 798
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F + + GD G G + + K E +V + + SND G F
Sbjct: 799 QKLDDDGLPFIGAKLQYGDPHYGYLNLSTGESYVVYYKSKENCIVDNIKVCSNDSGSGKF 858
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 859 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 916
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 917 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTER 972
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 973 LYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1018
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1019 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1078
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1079 PPSWSAMRNRKYNCTVCNRSDTIDTVSVPYVFRYFVAELA-AMNIRVKLDV 1128
>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae
3.042]
Length = 1008
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 201/484 (41%), Gaps = 129/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 541 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 600
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN--------KDI 104
P ED+LV+N+ S++ G R + +K V N KDI
Sbjct: 601 YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 660
Query: 105 QVKSR-------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSIKL 143
+ SD + G+ Q +G++ I K G+D +
Sbjct: 661 LMPPEYDNDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSLASGFPGSDMGRPV 719
Query: 144 KHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
K+T + K VL+S+ ++ V RQ+ +GDKFSS HGQKG
Sbjct: 720 KYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQT----RRPEVGDKFSSRHGQKG 775
Query: 195 VLG---------FLEQ-----------------TPAQLLEAALGK-GACDGLMSYATPFA 227
V+G F +Q T ++LE GK G G Y T F
Sbjct: 776 VVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF- 834
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
GG E+ +SQ+L + G ++ K Y + + + +F
Sbjct: 835 ---GGSPVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---------YVF 873
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 874 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 933
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 934 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 992
Query: 402 TLKF 405
T +
Sbjct: 993 TARL 996
>gi|46277253|gb|AAS86817.1| RNA polymerase II second largest subunit, partial [Sequoia
sempervirens]
Length = 556
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 165/410 (40%), Gaps = 111/410 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 175 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 231
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 232 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 291
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 292 EKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDD 351
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 352 SAGQVSKYPKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRS----VRIPQIGDKF 407
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 408 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 467
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 468 EGDATPFTDVTVDSI--------SKALHKCGYQMRGFETMYNGHTGRKL----------- 508
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+
Sbjct: 509 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 555
>gi|449329645|gb|AGE95915.1| DNA-directed RNA polymerase I second largest subunit [Encephalitozoon
cuniculi]
Length = 1062
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 192/471 (40%), Gaps = 101/471 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G+IP + + +YQ Q + QAIG P N R D + + Y Q P
Sbjct: 626 SGILGIIAGLIPYSDHNQSPRN--MYQCQM-AKQAIGHPAHNIRTRTDPTMYTVNYLQSP 682
Query: 62 LF----WILISD------CL--------GRPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
+ + ++ D C+ ED+LV+N+ S++ G+F YK E
Sbjct: 683 IVRTEGYEMVKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTE----- 737
Query: 104 IQVKSRPSDDMLNFGKIQS-----KSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSS 158
P D F + S + D + + G ++ + TE G+V V +
Sbjct: 738 ----KVPLDKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYLGTEPGIVDIVRVFE 793
Query: 159 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-------- 201
ND G+ A +IR +V S +GDKFSS HGQKGV + F E
Sbjct: 794 NDMGERCATFTIR----IVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIII 849
Query: 202 ---------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLN---- 247
T L+E+ GK C G T F S + EQ + ++
Sbjct: 850 NPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKS---FLLEQEEGDDEKVRRKEYL 906
Query: 248 CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 307
C R G + PM R+ IF + +YQ+ HM DK + R
Sbjct: 907 CSELRRHGFNYYGNE---------PMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 957
Query: 308 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGG 367
G+ T +PV RK+ GGI FGEM+ D LI+HGAS L +RL + + V +
Sbjct: 958 TKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFE----- 1012
Query: 368 PYCRICNS------------ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
YC C S + D+ +PY K L EL +M I ++ D
Sbjct: 1013 -YCGTCKSILFTNNGDCICGSSDLKAVEMPYVFKYLCCEL-LAMNIKVQID 1061
>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
Length = 1048
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 203/487 (41%), Gaps = 99/487 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 576 ILGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 632
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS + C VFR Y AE
Sbjct: 633 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YAAE 690
Query: 99 V------------------DNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI----- 135
+ + + I + D L + SG+ +I K I
Sbjct: 691 LLQYPNGRKDRLGGIQKDEEGRTIAKHACLDKDGLAIVGYRVHSGETMIMKETPIDQTST 750
Query: 136 --GADHS--------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
G+D + + + + KV++S+ + V RQ+ LGDK
Sbjct: 751 GIGSDRGSDDFRPAPVNYRTPDPAYIDKVMVSNTEKDTAIIKVQTRQT----RRPELGDK 806
Query: 186 FSSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITE 236
FSS HGQKGV+G + E P + + + M+ F TG V+
Sbjct: 807 FSSRHGQKGVVGIIVDQEDMPFSDSGVVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAG 866
Query: 237 QHQ-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ +F S + +G G ++ K YF + P + + +F
Sbjct: 867 RRDYGFGDAFRSHPVEEMGRVLVEHGFSWEGKDYFTSGITGDPHE---------AYLFNG 917
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+YQ+ HM +DK+ R++G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 918 PIYYQRLKHMVQDKMHSRSSGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 977
Query: 350 ERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGIT 402
ERL + A + ++G YC+ C S + + +PY AKLL QEL S ++G+
Sbjct: 978 ERLMYSSDATRVDICEWCGLLGYKGYCQTCKSTSQVTQMTMPYAAKLLVQELISMNVGVR 1037
Query: 403 LKFDTQL 409
++ + Q
Sbjct: 1038 IELEDQF 1044
>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
Length = 1246
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 138/493 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 780 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 839
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
P ED+LV+N+ S++ G R + ++ V N ++ S +
Sbjct: 840 YDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN--LKSYSNGTK 897
Query: 113 DMLN-----------------------FGKIQSKSGDIVIGKYAE-------IGADHSIK 142
D LN G+ Q +G++ I K IG+D
Sbjct: 898 DRLNPPTYENGAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSHMSGIGSDAGRP 956
Query: 143 LKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
+++T + + KV+ S ++ V +RQ+ +GDKFSS HGQK
Sbjct: 957 IQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQT----RRPEVGDKFSSRHGQK 1012
Query: 194 GVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPF 226
GV+G + T ++LE GK G G Y T F
Sbjct: 1013 GVVGIIADQADMPFTDLGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF 1072
Query: 227 ATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRS 284
G + E ++ ++ N G SGIT ++
Sbjct: 1073 G---GTPVEETSRTLIAHGFNYGGKEYLTSGITGEALPFY-------------------- 1109
Query: 285 LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 344
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G
Sbjct: 1110 -VFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGT 1168
Query: 345 SGNLHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFS 398
S L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL S
Sbjct: 1169 SQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMTIPYAAKLLIQEL-MS 1227
Query: 399 MGIT--LKFDTQL 409
M +T LK D +
Sbjct: 1228 MNVTARLKLDDEF 1240
>gi|19173004|ref|NP_597555.1| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1062
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 192/471 (40%), Gaps = 101/471 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G+IP + + +YQ Q + QAIG P N R D + + Y Q P
Sbjct: 626 SGILGIIAGLIPYSDHNQSPRN--MYQCQM-AKQAIGHPAHNIRTRTDPTMYTVNYLQSP 682
Query: 62 LF----WILISD------CL--------GRPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
+ + ++ D C+ ED+LV+N+ S++ G+F YK E
Sbjct: 683 IVRTEGYEMVKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTE----- 737
Query: 104 IQVKSRPSDDMLNFGKIQS-----KSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSS 158
P D F + S + D + + G ++ + TE G+V V +
Sbjct: 738 ----KVPLDKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYLGTEPGIVDIVRVFE 793
Query: 159 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-------- 201
ND G+ A +IR +V S +GDKFSS HGQKGV + F E
Sbjct: 794 NDMGERCATFTIR----IVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIII 849
Query: 202 ---------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLN---- 247
T L+E+ GK C G T F S + EQ + ++
Sbjct: 850 NPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKS---FLLEQEEGDDEKVRRKEYL 906
Query: 248 CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 307
C R G + PM R+ IF + +YQ+ HM DK + R
Sbjct: 907 CSELRRHGFNYYGNE---------PMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 957
Query: 308 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGG 367
G+ T +PV RK+ GGI FGEM+ D LI+HGAS L +RL + + V +
Sbjct: 958 TKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFE----- 1012
Query: 368 PYCRICNS------------ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
YC C S + D+ +PY K L EL +M I ++ D
Sbjct: 1013 -YCGTCRSILFTNNGDCICGSSDLKAVEMPYVFKYLCCEL-LAMNIKVQID 1061
>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
Length = 1110
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 197/478 (41%), Gaps = 125/478 (26%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQ 53
LLG+ G+IP Y SP QA+G N R+D+ L
Sbjct: 668 LLGVCAGLIP-------------YPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLY 714
Query: 54 QLFYPQRPLFWILISDCLGRP--------------------EDSLVMNQASLE-----CG 88
L YPQRPL + +G ED+LV+N+AS++ C
Sbjct: 715 NLVYPQRPLVKTRTIELIGFEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCL 774
Query: 89 VFRSE------------SYKAEVDNKDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKYA 133
V+R+E + + +D + KS +D+ L+ I + G+ V +
Sbjct: 775 VYRNEKTQLQRRGTLVETIEERIDGPALDAKSGEKIRADECLDMDGIVA-PGERVKDRAP 833
Query: 134 EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
+ I + TER ++ S D +S RQ+ LGDKFSS HGQK
Sbjct: 834 TMAKSQPIHIG-TERVMI------SEDATWRMVKLSYRQT----RRPELGDKFSSRHGQK 882
Query: 194 GVLGFL---EQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVITEQHQSFVSQLLNC 248
GV G + E P + G C D +M+ + P + G +L+ C
Sbjct: 883 GVTGLIVPQENMPFNEI------GMCPDVIMNPHGYPSRMTVG------------KLMEC 924
Query: 249 IGARNSGITFIFKHYFLF----------CLFECPMDWIAFICL--------VRSLIFTWI 290
IG++ ++ F + F + + ++ L + + IF
Sbjct: 925 IGSKAGALSGKFHYGTAFGGNTTEEMAQTMLDYGFNYYGKDLLMSGETGEPLEAYIFMGP 984
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R TG LT +P+ R + GG+ GEM+ D L+A+GAS L+E
Sbjct: 985 IYYQKLRHMVMDKMHARATGKVHNLTRQPLEGRAKDGGLRLGEMERDALLAYGASNLLNE 1044
Query: 351 RLKCKNVANVIQRVVGG-------PYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
R + ++ + G +CR+C + + + N+PY KLL QEL FSM I
Sbjct: 1045 RFFYSSDKYSVE-ICGNCGLHGYSGWCRVCRTGEHMASINMPYACKLLLQEL-FSMNI 1100
>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
RIB40]
Length = 1218
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 201/484 (41%), Gaps = 129/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 751 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 810
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN--------KDI 104
P ED+LV+N+ S++ G R + +K V N KDI
Sbjct: 811 YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 870
Query: 105 QVKSR-------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSIKL 143
+ SD + G+ Q +G++ I K G+D +
Sbjct: 871 LMPPEYDNDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSLASGFPGSDMGRPV 929
Query: 144 KHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
K+T + K VL+S+ ++ V RQ+ +GDKFSS HGQKG
Sbjct: 930 KYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQT----RRPEVGDKFSSRHGQKG 985
Query: 195 VLG---------FLEQ-----------------TPAQLLEAALGK-GACDGLMSYATPFA 227
V+G F +Q T ++LE GK G G Y T F
Sbjct: 986 VVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF- 1044
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
GG E+ +SQ+L + G ++ K Y + + + +F
Sbjct: 1045 ---GGSPVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---------YVF 1083
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1084 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1143
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1144 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1202
Query: 402 TLKF 405
T +
Sbjct: 1203 TARL 1206
>gi|392512568|emb|CAD26190.2| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1050
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 192/471 (40%), Gaps = 101/471 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G+IP + + +YQ Q + QAIG P N R D + + Y Q P
Sbjct: 614 SGILGIIAGLIPYSDHNQSPRN--MYQCQM-AKQAIGHPAHNIRTRTDPTMYTVNYLQSP 670
Query: 62 LF----WILISD------CL--------GRPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
+ + ++ D C+ ED+LV+N+ S++ G+F YK E
Sbjct: 671 IVRTEGYEMVKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTE----- 725
Query: 104 IQVKSRPSDDMLNFGKIQS-----KSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSS 158
P D F + S + D + + G ++ + TE G+V V +
Sbjct: 726 ----KVPLDKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYLGTEPGIVDIVRVFE 781
Query: 159 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-------- 201
ND G+ A +IR +V S +GDKFSS HGQKGV + F E
Sbjct: 782 NDMGERCATFTIR----IVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIII 837
Query: 202 ---------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLN---- 247
T L+E+ GK C G T F S + EQ + ++
Sbjct: 838 NPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKS---FLLEQEEGDDEKVRRKEYL 894
Query: 248 CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 307
C R G + PM R+ IF + +YQ+ HM DK + R
Sbjct: 895 CSELRRHGFNYYGNE---------PMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 945
Query: 308 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGG 367
G+ T +PV RK+ GGI FGEM+ D LI+HGAS L +RL + + V +
Sbjct: 946 TKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFE----- 1000
Query: 368 PYCRICNS------------ADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
YC C S + D+ +PY K L EL +M I ++ D
Sbjct: 1001 -YCGTCRSILFTNNGDCICGSSDLKAVEMPYVFKYLCCEL-LAMNIKVQID 1049
>gi|46277273|gb|AAS86827.1| RNA polymerase II second largest subunit, partial [Antirrhinum
majus]
Length = 573
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 161/410 (39%), Gaps = 109/410 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 193 SLVLGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 249
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 250 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 309
Query: 99 VDNKDIQVKS-------------------RPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK + DD + D++IGK D
Sbjct: 310 EKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDE 369
Query: 139 ----------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
HS L+H+E G+V +VLL++N DG F V IR V +GDKFSS
Sbjct: 370 NQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRS----VRIPQIGDKFSS 425
Query: 189 MHGQKGVLGFL--------------------------EQTPAQLLEAALGKGACD-GLMS 221
HGQKG +G T QL+E +GK A G
Sbjct: 426 RHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 485
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
ATPF T +S+ L+ G + G ++ + L
Sbjct: 486 DATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRPL------------- 524
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ F
Sbjct: 525 -TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 573
>gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
sansibarensis]
Length = 572
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 166/410 (40%), Gaps = 111/410 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 191 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 247
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 248 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 307
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK +P+ DD L + D++IGK + I D
Sbjct: 308 EKKMGTLVKEDFGKPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDE 367
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 368 SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 423
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 424 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 483
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 484 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRKLT---------- 525
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 329
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+
Sbjct: 526 ----AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 571
>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
Length = 1148
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 194/481 (40%), Gaps = 125/481 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 687 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIN 746
Query: 73 RP--------------------EDSLVMNQASLECGVFRSES------------------ 94
ED+L++N++S++ G R E+
Sbjct: 747 YDKLPAGQNATVAVMSYSGYDIEDALILNKSSIDRGFGRCETRRKTTTILKRYPNHTQDI 806
Query: 95 ---YKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHT----- 146
+ + + K I D L ++ SG I I K ++ +T
Sbjct: 807 IGGMRVDENGKPIWQHEALGPDGLGEVGMKVSSGQIYINKSIPTNTAEGLEAINTQSQYK 866
Query: 147 ---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 867 ETPVMYRGPEPSHVDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCG 922
Query: 198 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 230
+ Q T +++E GK G +G + Y T F
Sbjct: 923 LIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF---- 978
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
GG E+ +S++L G SG ++ CL ++ IF
Sbjct: 979 GGSKLEE----MSKILVDKGFNYSGKDMLYSGITGECL--------------QAYIFFGP 1020
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L E
Sbjct: 1021 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1080
Query: 351 RLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
RL + A +V + ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1081 RLMISSDAFEVDVCDKCGLMGYSGWCTTCRSAENIIKMTIPYAAKLLFQEL-LSMNIAPR 1139
Query: 405 F 405
Sbjct: 1140 L 1140
>gi|161899447|ref|XP_001712950.1| RBP2 DNA-directed RNA polymerase II second largest subunit
[Bigelowiella natans]
gi|75756444|gb|ABA27338.1| RBP2 DNA-directed RNA polymerase II second largest subunit
[Bigelowiella natans]
Length = 1159
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 207/460 (45%), Gaps = 79/460 (17%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+S +P + + YQS QAIG +N +R DT + L QRP
Sbjct: 701 SSILGVSASQVPFSQHNQSPRN--TYQSS-MGKQAIGINYSNFQLRYDTQINILESNQRP 757
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYK--AEV 99
L + + CL EDSL++N +S+E G+FR+ YK AE
Sbjct: 758 LVFTIQKLCLRGQEMPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTIIYKTFAER 817
Query: 100 DNKD-------IQVKSRPSD----DMLNFGKIQS--KSGDIVIGKY--------AEIGAD 138
+N + I+++S+ S+ D+ KI++ D++I K ++
Sbjct: 818 ENTNVNGIIEKIELESKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLTGKGDTKVNTI 877
Query: 139 HS-IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
HS +KL +G+V ++ S ++ G V IR + +GDKFSS+HGQKG++G
Sbjct: 878 HSDLKLPLNSQGVVDSIMYSLDEGGYKIIKVRIRS----IREPVIGDKFSSLHGQKGIIG 933
Query: 198 FLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVS----QLLNCIGAR 252
+ LL D +M+ +A P + G +I E S VS +L +
Sbjct: 934 Y--SYRQSLLPTTATSVTPDLIMNPHAIPSRMTIGHMI-EMLMSKVSSHSGKLGDATAFS 990
Query: 253 NSGITFIFKHYFLFCL----FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
I I H F + E + L +S++ I +YQ+ HM DK R+
Sbjct: 991 EGNIGKIIGHLSKFGIHHFGLEKMISGFNGDILQKSILVGPI-YYQRLKHMVVDKFFSRS 1049
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---KCKNVANVIQRVV 365
G ++ LT +PV + R GG+ FGEM+ DC+++HG+S L ERL K ++ ++
Sbjct: 1050 RGPYEILTRQPVEGKTREGGLRFGEMERDCVLSHGSSLFLKERLMDESDKFRVHICEK-- 1107
Query: 366 GGPYC----------RICNSADDIIKANVPYGAKLLSQEL 395
G +C + I + +PY KLL QEL
Sbjct: 1108 SGLFCPANLKTQTFWSTIYHSKSICQIFIPYACKLLFQEL 1147
>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
Length = 1142
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 201/481 (41%), Gaps = 126/481 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 682 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 741
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N+AS++ G R E+ + +DI
Sbjct: 742 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQDI 801
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI----KLKHT 146
Q ++ D + G ++ +SG I + K A SI + ++
Sbjct: 802 IGGMRVDENGEPIWQHQALGPDGLGEVG-MKVESGQIYVNKSVPTNASDSILTQTQAQYK 860
Query: 147 ERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
E +V + V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 861 ETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCG 916
Query: 198 FL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATST 230
+ T +++E GK G +G + Y T F
Sbjct: 917 IIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF---- 972
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
GG E +S++L G SG ++ CL ++ IF
Sbjct: 973 GGSKLED----MSKILVDNGFNYSGKDMLYSGITGECL--------------QAYIFFGP 1014
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L E
Sbjct: 1015 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1074
Query: 351 RLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 404
RL + A +V ++ ++G +C C +A+ ++K +PY AKLL QEL +M I +
Sbjct: 1075 RLMLSSDAFEVDVCEKCGLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQEL-LAMNIAPR 1133
Query: 405 F 405
Sbjct: 1134 L 1134
>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1180
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 201/484 (41%), Gaps = 129/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 713 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 772
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN--------KDI 104
P ED+LV+N+ S++ G R + +K V N KDI
Sbjct: 773 YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 832
Query: 105 QVKSR-------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSIKL 143
+ SD + G+ Q +G++ I K G+D +
Sbjct: 833 LMPPEYDNDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSLASGFPGSDMGRPV 891
Query: 144 KHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
K+T + K VL+S+ ++ V RQ+ +GDKFSS HGQKG
Sbjct: 892 KYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQT----RRPEVGDKFSSRHGQKG 947
Query: 195 VLG---------FLEQ-----------------TPAQLLEAALGK-GACDGLMSYATPFA 227
V+G F +Q T ++LE GK G G Y T F
Sbjct: 948 VVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF- 1006
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
GG E+ +SQ+L + G ++ K Y + + + +F
Sbjct: 1007 ---GGSPVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---------YVF 1045
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1046 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1105
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1106 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1164
Query: 402 TLKF 405
T +
Sbjct: 1165 TARL 1168
>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
Length = 1138
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 196/486 (40%), Gaps = 131/486 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 675 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMCYPQQPMVKTKTIELID 734
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSES------------- 94
P ED+LV+N+AS++ C V R +
Sbjct: 735 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKTTAVLKRYPNHSKDI 794
Query: 95 ---YKAEVDNKDI-QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI--------- 141
+ + D K I Q ++ D + G ++ +SG I K A S+
Sbjct: 795 LAGMRVKEDGKPIFQHEALGPDGLAEVG-VEVQSGQTYINKCVPTNATESVVGGQPTINQ 853
Query: 142 KLKHTE---------RGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
+ +H E +V +V++S +D+ + V +RQ+ LGDKFSS HGQ
Sbjct: 854 QQQHRETPVNYRAPVSSVVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQ 909
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV G + Q T ++LE GK G DG + Y T
Sbjct: 910 KGVCGIIVQQEDMPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLDGSLQYGTC 969
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E +SQ+L G SG ++ L ++
Sbjct: 970 F----GGSKLED----MSQILIDKGFNYSGKDMLYSGITGEAL--------------QAY 1007
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1008 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1067
Query: 346 GNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL +V N + +C C +++ ++K +PY AKLL QEL SM
Sbjct: 1068 QLLLERLMLSSDAFDVDVCNSCGLMGYNSWCPSCKTSEGVVKMTIPYAAKLLFQEL-ISM 1126
Query: 400 GITLKF 405
I +
Sbjct: 1127 NIAPRL 1132
>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
flavus NRRL3357]
gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
flavus NRRL3357]
Length = 1218
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 201/484 (41%), Gaps = 129/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 751 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 810
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN--------KDI 104
P ED+LV+N+ S++ G R + +K V N KDI
Sbjct: 811 YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 870
Query: 105 QVKSR-------------PSDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSIKL 143
+ SD + G+ Q +G++ I K G+D +
Sbjct: 871 LMPPEYDNDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSLASGFPGSDMGRPV 929
Query: 144 KHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
K+T + K VL+S+ ++ V RQ+ +GDKFSS HGQKG
Sbjct: 930 KYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQT----RRPEVGDKFSSRHGQKG 985
Query: 195 VLG---------FLEQ-----------------TPAQLLEAALGK-GACDGLMSYATPFA 227
V+G F +Q T ++LE GK G G Y T F
Sbjct: 986 VVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF- 1044
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
GG E+ +SQ+L + G ++ K Y + + + +F
Sbjct: 1045 ---GGSPVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---------YVF 1083
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1084 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1143
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1144 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1202
Query: 402 TLKF 405
T +
Sbjct: 1203 TARL 1206
>gi|426223599|ref|XP_004005962.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Ovis
aries]
Length = 1079
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 180/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVM 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G + K E +V + + SND G F
Sbjct: 749 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 808
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 809 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 921
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 922 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 968
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 969 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1028
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1029 PPSWSALRNRKYSCALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|66806019|ref|XP_636731.1| RNA polymerase III, second largest subunit [Dictyostelium discoideum
AX4]
gi|74852634|sp|Q54IZ9.1|RPC2_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc2; Short=RNA
polymerase III subunit C2; AltName: Full=DNA-directed RNA
polymerase III subunit B; Contains: RecName: Full=Ddi
rpc2 intein
gi|60465151|gb|EAL63250.1| RNA polymerase III, second largest subunit [Dictyostelium discoideum
AX4]
Length = 1608
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 198/504 (39%), Gaps = 140/504 (27%)
Query: 2 SFLLGLSCGIIP--SHLQ----TMT--MQGWVLYQSQKHSP----------QAIGFPTTN 43
SFL I P +HL+ TM + G + Y SP QAIG N
Sbjct: 1121 SFLAWREAAIQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 1180
Query: 44 PNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RPEDSLVMNQA 83
R+DTLL L + QRPL D L ED+LVMN+A
Sbjct: 1181 QLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKA 1240
Query: 84 SLECGVFRSESYKAEV--------DNKDIQVKSRPSD-DMLNFGKIQS----------KS 124
SL+ G R K +V D D P+D +G + S +
Sbjct: 1241 SLDRGFGRCIVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQK 1300
Query: 125 GDIVIGKYA-----------EIGADHSIK-----LKHTERGLVLKVLLSSNDDGKNFAVV 168
G I++ KY+ E+ D + K K+ + KVLL+S DD + +
Sbjct: 1301 GQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQ----L 1356
Query: 169 SIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------------- 203
I+ + LGDKFSS HGQKGV G + E P
Sbjct: 1357 LIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMT 1416
Query: 204 -AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 262
+++E GK G++S F T GG E +S++L + G ++ K
Sbjct: 1417 IGKMIELLAGKA---GVLSGKFGFGTCFGGDRVEN----ISKVL-----ISKGFSYGGKD 1464
Query: 263 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 322
Y + P+ C IF FYQ+ HM DK+ R G LT +P
Sbjct: 1465 YVTSGVTGEPL-----ACF----IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEG 1515
Query: 323 RKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP-YCR 371
R R GG+ GEM+ DCLI +GAS + ERL CKN +G YC+
Sbjct: 1516 RARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTVYACKNCG-----FLGYEGYCQ 1570
Query: 372 ICNSADDIIKANVPYGAKLLSQEL 395
C S+ DI +PY KLL QEL
Sbjct: 1571 YCKSSVDISTIQIPYACKLLFQEL 1594
>gi|426223603|ref|XP_004005964.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Ovis aries]
Length = 924
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 180/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 475 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 533
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 534 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVM 593
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G + K E +V + + SND G F
Sbjct: 594 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 653
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 654 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 711
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 712 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 766
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 767 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 813
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 814 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 873
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 874 PPSWSALRNRKYSCALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 922
>gi|401825637|ref|XP_003886913.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392998070|gb|AFM97932.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1046
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/440 (28%), Positives = 184/440 (41%), Gaps = 89/440 (20%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWI------------------LI 67
+YQ Q + QAIG P N R D+ + + Y Q P+ ++
Sbjct: 636 MYQCQ-MAKQAIGIPAYNIKTRTDSSMYTVNYLQSPIVRTKGYDLVKNYPVGINCMVAVL 694
Query: 68 SDCLGRPEDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDI 127
S ED+LV+++ S++ G+F YK E K K R +L G+ K +
Sbjct: 695 SYTAYDMEDALVISKNSIDRGLFTGYIYKTE---KVSLEKGRYFTHLLPVGERIEKG--L 749
Query: 128 VIGKYAE-IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
V+ +Y + G ++ K E G++ V + ND G+ A +IR +V + +GDKF
Sbjct: 750 VLYRYVDQEGREYESKYFEAEGGVIDSVRVFDNDSGERCATFTIR----IVRNPSIGDKF 805
Query: 187 SSMHGQKGV---------LGFLEQ-----------------TPAQLLEAALGKGAC-DGL 219
SS HGQKGV + F E T L+E+ GK C G
Sbjct: 806 SSRHGQKGVCSMNWPTVDMPFTESGYVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGN 865
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
+ T F G+++ + + + L C + G + PM
Sbjct: 866 VQDGTAFER---GLLSGEDEKNRRKELLCKELQEHGFNYYGNE---------PMYSGISG 913
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+R IF + +YQ+ HM DK + R G+ T +PV RK+ GGI FGEM+ D L
Sbjct: 914 NELRVDIFVGVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKQGGIRFGEMERDAL 973
Query: 340 IAHGASGNLHER-LKCKNVANVIQRVVGGPYCRICNS------------ADDIIKANVPY 386
I+HGAS L +R LKC + YC C S + D+ +PY
Sbjct: 974 ISHGASHLLQDRLLKCSDGTMF-------EYCGTCKSILFTNNGDCICGSSDLKTVEMPY 1026
Query: 387 GAKLLSQELSFSMGITLKFD 406
K L EL +M I +K D
Sbjct: 1027 VFKYLCYEL-LAMNIRVKID 1045
>gi|11499471|ref|NP_070712.1| DNA-directed RNA polymerase subunit B' [Archaeoglobus fulgidus DSM
4304]
gi|3122770|sp|O28392.1|RPOB1_ARCFU RecName: Full=DNA-directed RNA polymerase subunit B'
gi|2648657|gb|AAB89366.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [Archaeoglobus
fulgidus DSM 4304]
Length = 604
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 126/480 (26%), Positives = 198/480 (41%), Gaps = 97/480 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G+ G IP + + + K Q++G P +N R DT + +PQ P
Sbjct: 129 SLIVGICTGSIPYAEHNASPRNTMGAAMIK---QSLGIPYSNLAWRTDTRGHLMQHPQVP 185
Query: 62 L-------------------FWILISDCLG-RPEDSLVMNQASLECGVFRSESYKA---- 97
+ F + + G ED+L+MN+ S+E G+ RS Y+
Sbjct: 186 IVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYESE 245
Query: 98 ------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA------ 133
E+ DI + + +D L F + + D++IG+ +
Sbjct: 246 EMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRFLE 305
Query: 134 ---EIG------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G + S+ ++ E+G+V V L ++ G A V +R + LGD
Sbjct: 306 EPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRD----LRIPELGD 361
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVS 243
KF+S HGQKGV+G L P + + D +++ +A P + G V+ +
Sbjct: 362 KFASRHGQKGVVGLL--VPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVL----EMIGG 415
Query: 244 QLLNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 292
++ + G R G F + K+ F E D I + IF + +
Sbjct: 416 KVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVD-IFVGVIY 474
Query: 293 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L +RL
Sbjct: 475 YQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALLLKDRL 534
Query: 353 -------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
C +VA R YC IC+ +I K + Y KLL EL M
Sbjct: 535 LEESDKVEVWVCGNCGHVATYDYR-RNTAYCHICDDESNIHKVEMSYAFKLLLDELKSMM 593
>gi|344291448|ref|XP_003417447.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA2-like [Loxodonta africana]
Length = 1135
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 126/471 (26%), Positives = 185/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q + GD G + + K E +V + + SND G F
Sbjct: 805 QKLDDDGLPFIGAQLQYGDPYYSYLNLNTGENFVVYYKSKENCVVDNIKVCSNDTGSGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTER 978
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
++ I+ + L ++ IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 979 LYSG-------------ISGLEL-KADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
PV R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1085 PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIRVKLDV 1134
>gi|426223597|ref|XP_004005961.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Ovis
aries]
Length = 1135
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 180/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVM 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G + K E +V + + SND G F
Sbjct: 805 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 977
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 978 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1085 PPSWSALRNRKYSCALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|83415473|gb|ABC17944.1| RNA polymerase II second largest subunit, partial [Conidiobolus
coronatus]
Length = 727
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 171/413 (41%), Gaps = 112/413 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +N +R+DTL L+YPQ+P
Sbjct: 344 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYLSNYQLRMDTLANILYYPQKP 400
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+ +D
Sbjct: 401 LVATRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYMDQ 460
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA------ 133
+K +++ +P+ DD L I+ DI+IGK
Sbjct: 461 EKQVGSKKLEIFEKPTRESTLRLKHGTYEKLEDDGLIAPGIRVSGDDIIIGKTVPIPDDD 520
Query: 134 -EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
E+G D S L+ TE G+V +V+L++N+DG F V +R + +GDK
Sbjct: 521 EELGQRTNHTKRDASTPLRSTETGIVDQVMLTTNNDGLKFVKVRVRST----RVPQMGDK 576
Query: 186 FSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDG 218
F+S HGQKG +G E P L+E LGK G G
Sbjct: 577 FASRHGQKGTIGVTYRQEDMPFTADGLTPDLIINPHAIPSRMTIGHLVECLLGKVGTMLG 636
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF T I++Q L G + G ++ + L
Sbjct: 637 AEGDATPFTDVTVDSISKQ--------LELRGYQKRGFEVMYNGHTGRKLT--------- 679
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 680 -----AQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 727
>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1149
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 213/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ I+PS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGA-------DHSIKLKHTERGLVLK---------VLLSSNDDGKNF 165
+SG I I K + + +++ ++ E ++ + V++S +D+ +
Sbjct: 836 VQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
polymerase III subunit C2; AltName: Full=C128; AltName:
Full=DNA-directed RNA polymerase III 130 kDa polypeptide
gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1149
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 213/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ I+PS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGA-------DHSIKLKHTERGLVLK---------VLLSSNDDGKNF 165
+SG I I K + + +++ ++ E ++ + V++S +D+ +
Sbjct: 836 VQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|91773159|ref|YP_565851.1| DNA-directed RNA polymerase subunit B' [Methanococcoides burtonii
DSM 6242]
gi|91712174|gb|ABE52101.1| DNA-directed RNA polymerase subunit B' [Methanococcoides burtonii
DSM 6242]
Length = 604
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/504 (25%), Positives = 201/504 (39%), Gaps = 130/504 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ G++P + + + K Q IG ++N +R DT L YPQ+
Sbjct: 129 SLMLGICTGMVPYPEHNASPRNTMGAAMIK---QCIGVSSSNLKLRPDTRAHVLHYPQKA 185
Query: 62 LFWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS--------- 92
+ D + RP ED+LV N+ S++ G+ RS
Sbjct: 186 MTRTQTCDAIHFDERPAGQNFVVAVMSYEGHNIEDALVFNKGSIQRGLGRSHFLRTFEGE 245
Query: 93 -------ESYKAEVDNKDIQVKSRPSDDMLNF---GKIQSKS----GDIVIGKYA----- 133
+ K E+ + + + +R +D N G + ++ D++IGK +
Sbjct: 246 ERRYPGGQEDKFEIPDSEFR-GARSADAYANLDIDGLVNPETVVGPNDVLIGKTSPPRFL 304
Query: 134 ----------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
E + +I ++ E+G+V V+L+ + +G A V IR +G
Sbjct: 305 EEQSDFGITIEQRRESAITMRSNEKGIVDTVILTESINGTRLAKVKIRDE----RIPEIG 360
Query: 184 DKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GAC 216
DKF+S HGQKGV+G + T A +LE GK G+
Sbjct: 361 DKFASRHGQKGVIGLIVPYHDMPFTELGMVPDLVINPHAIPSRMTVAHVLEMIGGKLGSL 420
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
+G + T F+ I + G +N G + K +FC D +
Sbjct: 421 EGQRKWGTAFSGDMEDGIRD-------------GLKNRGFSHTGKE--VFC------DGV 459
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+++ +F + YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+
Sbjct: 460 TG-KKIQADVFVGVILYQKLHHMVASKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMER 518
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKAN 383
D LI HGA+ L ERL +C VA R YC C + DI
Sbjct: 519 DVLIGHGAAMTLKERLLDESDKVVELVCAQCGMVA-TFDRTRNIRYCSNCGAETDIHPVE 577
Query: 384 VPYGAKLLSQEL-SFSMGITLKFD 406
+ Y KLL E+ S + L+ D
Sbjct: 578 MSYAFKLLLDEIKSLGVAPRLRLD 601
>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
Length = 1149
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 213/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ I+PS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGA-------DHSIKLKHTERGLVLK---------VLLSSNDDGKNF 165
+SG I I K + + +++ ++ E ++ + V++S +D+ +
Sbjct: 836 VQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
Length = 1149
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 213/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ I+PS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGXPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGA-------DHSIKLKHTERGLVLK---------VLLSSNDDGKNF 165
+SG I I K + + +++ ++ E ++ + V++S +D+ +
Sbjct: 836 VQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|417405959|gb|JAA49665.1| Putative rna polymerase ii second largest subunit [Desmodus rotundus]
Length = 1135
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 186/472 (39%), Gaps = 115/472 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAVVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------- 118
ED++++N+AS E G YK+E D+ K + DD L FG
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPR 802
Query: 119 KIQSKSGDIV--IGKYAEIG-----------ADHSIKL-KHTERGLVLKVLLSSNDDGK- 163
+Q GD + IG + G + S+ K E +V + + SND G
Sbjct: 803 TVQKLDGDGLPFIGAQLQYGDPYYSYVNLNTGESSVMFYKSKENCIVDNIKVCSNDTGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V I +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCVCI--TVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMAPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +CN +D + +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCNRSDTVDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 171/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 531 SMILGICASIVPFPDHNQSPRN--TYQSAM-GKQAMGIYLTNFQLRMDTMANILYYPQKP 587
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 588 LVTTRAMEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRSLFYRSYMDQ 647
Query: 102 K------DIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKY------- 132
+ +++ +P+ DD L I+ DI+IGK
Sbjct: 648 EKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIIIGKTIPLSQDS 707
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 708 EELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRST----RIPQMGD 763
Query: 185 KFSSMHGQKGVLGFLEQTP--------------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G +T L+E LGK
Sbjct: 764 KFASRHGQKGTVGMTYRTEDMPFTVNGITPDIIINPHAIPSRMTIGHLVECLLGKVSTLT 823
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G +F + L
Sbjct: 824 GDEGDATPFTDVTVEAI--------SKLLRENGYQSRGFEVMFNGHTGKKL--------- 866
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 867 -----QAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915
>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1149
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 138/495 (27%), Positives = 208/495 (42%), Gaps = 126/495 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL + YPQ+P+
Sbjct: 680 ILGXVAGLIPYPHHNQSPRNT--YQCA-MGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMV 736
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--- 100
I + D P ED+LV+N++S++ G R E+ +
Sbjct: 737 KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLK 796
Query: 101 -----NKDI--------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA---- 137
+DI Q +S D + G ++ +SG I I K +
Sbjct: 797 RYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVG-MKVQSGQIYINKSVPTNSADAP 855
Query: 138 ---DHSIKLKHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+ +++ ++ E ++ + V++S +D+ + V +RQ+ LGDK
Sbjct: 856 NPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDK 911
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
FSS HGQKGV G + T +++E GK G +G
Sbjct: 912 FSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNG 971
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWI 276
+ Y T F G + + + V Q N G SGIT EC
Sbjct: 972 TLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGITG-----------EC----- 1012
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+
Sbjct: 1013 -----LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMER 1067
Query: 337 DCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKL 390
DC+IA+GAS L ERL + A +V + ++G +C C SA++IIK +PY AKL
Sbjct: 1068 DCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKL 1127
Query: 391 LSQELSFSMGITLKF 405
L QEL SM I +
Sbjct: 1128 LFQEL-LSMNIAPRL 1141
>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1157
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 195/490 (39%), Gaps = 138/490 (28%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 693 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQPMVKTKTIELIN 752
Query: 73 RP--------------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRP-- 110
ED+LV+N++SL+ G R + V +Q+K P
Sbjct: 753 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQV----VRKNTVQLKKYPNH 808
Query: 111 SDDMLN---------------------FGKIQSK--SGDIVIGKY--------------- 132
+ D+L+ G++ S+ +G + K+
Sbjct: 809 TKDILSGMRVDENNEPIFPHQALGPDGLGEVGSRIENGQVFANKFVPTNSGESTFAGGMQ 868
Query: 133 ----AEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
AE + + K E V +V++S +D+ + V +RQ+ LGDKFSS
Sbjct: 869 QQPQAESHREAAQYYKGPEPSYVDQVMMSVSDNDQALVKVLLRQT----RRPELGDKFSS 924
Query: 189 MHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMS 221
HGQKGV G + Q T +++E GK G +G +
Sbjct: 925 RHGQKGVCGIIVQHEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLE 984
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
Y T F GG E +S++L G SG ++ CL
Sbjct: 985 YGTCF----GGSKLED----MSKILVSKGFSYSGKDMLYSGITGECL------------- 1023
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 341
++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA
Sbjct: 1024 -QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 1082
Query: 342 HGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
+GAS L ERL +V N + +C C +++IIK +PY AKLL QEL
Sbjct: 1083 YGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKGSENIIKMTIPYAAKLLFQEL 1142
Query: 396 SFSMGITLKF 405
SM I +
Sbjct: 1143 -LSMNIAPRL 1151
>gi|426223601|ref|XP_004005963.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Ovis aries]
Length = 996
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 180/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 547 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 605
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 606 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVM 665
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G + K E +V + + SND G F
Sbjct: 666 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 725
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 726 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 783
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 784 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 838
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 839 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 885
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 886 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 945
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 946 PPSWSALRNRKYSCALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 994
>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella
allomycis]
Length = 697
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 173/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G +TN R+DTL LFYPQ+P
Sbjct: 313 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGINSTNFQRRMDTLNNILFYPQKP 369
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ++++ G+FRS YK D
Sbjct: 370 LVTTRSMEYLHFRELPAGQNAIVAIACYSGYNQEDSVIMNQSAIDRGLFRSICYKTYTDE 429
Query: 102 KD----IQVKS--RPS----------------DDMLNFGKIQSKSGDIVIGKYA------ 133
+ +QV+ +P+ DD L I+ DI+IGK
Sbjct: 430 EKKVGTLQVEEFMKPTFTTTVRMRHGTYDKLEDDGLVAPGIKISGEDIIIGKTVPIPDDS 489
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S LK E G++ +V++S+N DG F V IR V+ V +GD
Sbjct: 490 DELGQRTSTHTRRDASTPLKSNEHGIIDQVMISTNADGYRF--VKIR--VSSVRVPQMGD 545
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P L+E LGK A
Sbjct: 546 KFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLGKVSAIT 605
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I+E LL C G ++ G ++ + L
Sbjct: 606 GDEGDATPFTDVTVESISET-------LLKC-GYQSRGFEVLYNGHSGRKL--------- 648
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 649 -----NAQIFIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 697
>gi|410670213|ref|YP_006922584.1| DNA-directed RNA polymerase, subunit B' [Methanolobus psychrophilus
R15]
gi|409169341|gb|AFV23216.1| DNA-directed RNA polymerase, subunit B' [Methanolobus psychrophilus
R15]
Length = 604
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 123/486 (25%), Positives = 202/486 (41%), Gaps = 100/486 (20%)
Query: 3 FLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL 62
+LG+ G++P + + + K Q IG T+N +R DT L YPQ+ +
Sbjct: 130 LMLGICTGMVPYPEHNASPRNTMGAAMVK---QCIGVSTSNTKLRPDTRAHLLHYPQKAM 186
Query: 63 FWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS---------- 92
+ + RP ED+LV N+ S+E G+ RS
Sbjct: 187 VRTQTCEAIHFDERPAGQNFVVAVMSYEGHNIEDALVFNKGSIERGLGRSHFLRTFEGEE 246
Query: 93 ------ESYKAEVDNKDIQVKSRPSDDMLNF---GKIQSKS----GDIVIGKYA------ 133
+ K E+ + + + +R S+ N G + ++ D++IGK +
Sbjct: 247 RRYPGGQEDKFEIPDSEFR-GARSSEAYANLDVDGLVNPETVVGPNDVLIGKTSPPRFLE 305
Query: 134 ---------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E + +I ++ E+G+V VLL+++ +G A V IR +GD
Sbjct: 306 EQSDFGITVEQRRESAITMRSNEKGVVDTVLLTASINGTRLAKVKIRDQ----RVPEIGD 361
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVS 243
KF+S HGQKGV+G + P + + D +++ +A P + G V+ +
Sbjct: 362 KFASRHGQKGVIGLI--VPYEDMPFTHTGMVPDLVINPHAIPSRMTVGHVL----EMIGG 415
Query: 244 QLLNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 292
++ + G R + F + H F E D + ++R+ +F +
Sbjct: 416 KIGSMEGRRINATAFSGEYEDDLRAALKSHGFAHTGKEVFYDGVTG-QMIRADVFVGVIL 474
Query: 293 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L ERL
Sbjct: 475 YQKLHHMVASKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMTLKERL 534
Query: 353 KCKNVANVIQRVVGG-------------PYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
V++ V G YC C + DI + Y KLL E+ S+
Sbjct: 535 -LDESDKVVELVCGHCGMIATFDRKRNIRYCANCGAETDIHPVEMSYAFKLLLDEIK-SL 592
Query: 400 GITLKF 405
G+ +
Sbjct: 593 GVAPRL 598
>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
Length = 881
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 135/486 (27%), Positives = 202/486 (41%), Gaps = 133/486 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 418 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 477
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N++S++ G R E+ + +DI
Sbjct: 478 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDI 537
Query: 105 --------------QVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-------DHSIKL 143
Q +S D + G ++ +SG I I K + + +++
Sbjct: 538 IGGMRVDENGDPIWQHQSLGPDGLGEVG-MKVQSGQIYINKSVPTNSADAPNPNNVNVQT 596
Query: 144 KHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
++ E ++ + V++S +D+ + V +RQ+ LGDKFSS HGQKG
Sbjct: 597 QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKG 652
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFA 227
V G + T +++E GK G +G + Y T F
Sbjct: 653 VCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG 712
Query: 228 TSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
G + + + V Q N G SGIT EC +++
Sbjct: 713 ---GSKLEDMSKILVDQGFNYSGKDMLYSGITG-----------EC----------LQAY 748
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 749 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 808
Query: 346 GNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + A +V + ++G +C C SA++IIK +PY AKLL QEL SM
Sbjct: 809 QLLLERLMISSDAFEVDVCDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSM 867
Query: 400 GITLKF 405
I +
Sbjct: 868 NIAPRL 873
>gi|355712704|gb|AES04438.1| polymerase I polypeptide B, 128kDa [Mustela putorius furo]
Length = 496
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 127/471 (26%), Positives = 183/471 (38%), Gaps = 113/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 48 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 106
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 107 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIL 166
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F Q + GD G Y + S + K E +V + + SND G
Sbjct: 167 QKLDDDGLPFIGAQLQYGDPYYG-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGNGK 225
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 226 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 283
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + +LL G G
Sbjct: 284 SRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGELLKAGGYNFYGTE 339
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 340 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN 385
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 386 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 445
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 446 PPPSWSATRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 495
>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
Length = 1160
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 138/493 (27%), Positives = 197/493 (39%), Gaps = 127/493 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + K + AIG+ N R+DTLL + YPQ+P+
Sbjct: 688 ILGAVAGVIPYPHHNQSPRNTYQCAMGKQAIGAIGY---NQLQRIDTLLYLMVYPQQPMV 744
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESY--- 95
+ +G ED+LV+N+ASL+ C VF S
Sbjct: 745 KTKTIELIGYDKLPAGQNAMVAIMSYSGYDIEDALVLNKASLDRGFGRCQVFHKHSAIIR 804
Query: 96 -------------KAEVDNKDIQVKSRP-SDDMLNFGKIQSKSGDIVIGKYAEIGA-DHS 140
+ + +N + K + DD L Q +SG + I K A D++
Sbjct: 805 KYPNGTHDRIGDPQRDPENGKVIWKHKILEDDGLAGVGCQVQSGQVYINKQTPTNALDNT 864
Query: 141 IKL-----------------KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
I L K E + KV+L+++D + V RQ+ LG
Sbjct: 865 IALGQPQTTESGYRATPMTYKAPEPAYIDKVMLTNSDADQTLVKVLTRQT----RRPELG 920
Query: 184 DKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GAC 216
DKFSS HGQKGV G + Q T +++E GK G
Sbjct: 921 DKFSSRHGQKGVCGVIIQQEDMPFNDIGICPDIIMNPHGFPSRMTVGKMIELLSGKAGVL 980
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMD 274
G + Y T F G + + + V N G SGIT
Sbjct: 981 RGTLEYGTCFG---GSRVEDMSRILVEHGYNYSGKDMLTSGITG---------------- 1021
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ + IF +YQ+ HM DK+ R G LT +P R R GG+ GEM
Sbjct: 1022 -----EQLEAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1076
Query: 335 KCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGA 388
+ DCLIA+GAS L ERL + A +V + ++G +C C S+ ++K +PY A
Sbjct: 1077 ERDCLIAYGASQLLLERLMLSSDAFEVDVCENCGLLGYKGWCNSCESSKHVVKMTIPYAA 1136
Query: 389 KLLSQELSFSMGI 401
KLL QEL SM I
Sbjct: 1137 KLLFQEL-MSMNI 1148
>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
Length = 1144
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 132/480 (27%), Positives = 195/480 (40%), Gaps = 124/480 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 684 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 743
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKA--------------- 97
P ED+LV+N++S++ G R E+ +
Sbjct: 744 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKLTTVLKRYPNHTQDM 803
Query: 98 ----EVDNKDIQV-KSRP-SDDMLNFGKIQSKSGDIVIGKYAEIGADHSI----KLKHTE 147
VD + + +P D L ++ +SG I + K A S+ + ++ E
Sbjct: 804 VGGMRVDESGEPIWQHKPLGPDGLGEVGMKVESGQIYVNKSVPTNASDSVLTQSQAQYRE 863
Query: 148 RGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
+V + V++S +++ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 864 TPVVYRAPEPSHIDQVMMSVSENDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGI 919
Query: 199 L--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ T +++E GK G +G + Y T F G
Sbjct: 920 IVNHEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF----G 975
Query: 232 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
G E +SQ+L G SG ++ CL ++ IF
Sbjct: 976 GSKLEN----MSQILVNHGFNYSGKDMLYSGITGECL--------------QAYIFFGPI 1017
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ER
Sbjct: 1018 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1077
Query: 352 LKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
L +V N + +C C A+++IK +PY AKLL QEL SM I +
Sbjct: 1078 LMISSDAFEVDVCNKCGLMGYSGWCTSCKGAENVIKMTIPYAAKLLFQEL-LSMNIAPRL 1136
>gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia
japonica]
Length = 591
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 163/409 (39%), Gaps = 111/409 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 212 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 268
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDSL+MNQ+S++ G FRS SY+ E
Sbjct: 269 LVTTRAMEHLHFRQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFRSLFFRSYRDE 328
Query: 99 VD-------------NKDIQVKSRP------SDDMLNFGKIQSKSGDIVIGKYAEI---- 135
N+D + R DD L + D++IGK +
Sbjct: 329 EKKMGTLIKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMVPEE 388
Query: 136 ---------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 389 TQGPSSRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 444
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGACD-GL 219
SS HGQKG +G T QL+E +GK A G
Sbjct: 445 SSRHGQKGTVGMTYTQEDMPWSIEGITPDIIVNPHAIPSRMTVGQLIECIMGKVAAHVGK 504
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 505 KGDATPFTDVT--------LDNISKALHKCGYQMRGFETMYNGHTGRQLT---------- 546
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
S+IF T+YQ+ HM +DK+ R G Q LT +P R R GG
Sbjct: 547 ----SMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 591
>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
Length = 1131
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 184/465 (39%), Gaps = 120/465 (25%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP-------------------- 74
Q++G N IR DT L QL YPQ PL + + + +
Sbjct: 679 QSLGIIGMNTQIRCDTQLYQLIYPQTPLVRTVSMEAVNQHRLPAGHNAQVAVMSYSCYDI 738
Query: 75 EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------- 111
ED+L+MN++SL+ G R+ YK V +I +++ S
Sbjct: 739 EDALIMNKSSLDRGFGRTAVYKKSVTECEINQRNKESRFNERIDEPPTKTHNTKKKFIKK 798
Query: 112 -----DDMLNFGKIQSKSGDIVIGKYAEIGADH----SIKLKHTERGL-------VLKVL 155
+D + Q GDI + K D+ +I++ T V +VL
Sbjct: 799 YHALDNDGITKVGAQLHHGDIYVNKKTPQVPDNPQTENIQIADTPSVFKEKWPYTVDRVL 858
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------- 203
+ +N + + +I+ + GDKFSS HGQKGV+G + E P
Sbjct: 859 IINNTNDGTEKIKTIKTIFRQIRRPEFGDKFSSRHGQKGVVGLIVNQEDMPFNERGWCPD 918
Query: 204 --------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQ--HQSFVSQLL 246
A+L+E GK GA +G Y T F + E+ + F Q
Sbjct: 919 LIMNPHGYPSRMTIAKLMELLCGKLGALEGKFKYGTAFGGENVLQVGEELLKRGFHYQGK 978
Query: 247 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 306
+C+ SGIT + EC ++ FYQ+ HM DK+
Sbjct: 979 DCLI---SGITGEY--------MEC-------------YVYQGPIFYQRLKHMVIDKIHA 1014
Query: 307 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN------VANV 360
R G + LT +PV R + GG GEM+ DC +A+GAS L ERL + V +
Sbjct: 1015 RAKGPMEKLTRQPVEGRAKDGGQRIGEMERDCFLAYGASNLLIERLLISSDPFNVYVCEI 1074
Query: 361 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
CR CN+ D + + +PY KLL QEL +M I K
Sbjct: 1075 CGMFKSDSVCRGCNT-DKVYQIRLPYCCKLLFQEL-LAMNIKPKL 1117
>gi|359321639|ref|XP_003639649.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Canis lupus familiaris]
Length = 1079
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 187/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + DD L FG +
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPR 746
Query: 120 IQSKSGD---IVIGKYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGK- 163
I K D IG + G + L K E +V + + SND G
Sbjct: 747 ILQKLDDDGLPFIGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNG 806
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 807 RFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGF 864
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + +LL G G
Sbjct: 865 PSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGT 920
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 921 ERLYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 966
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 967 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1027 KPPPSWSAMRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 194/486 (39%), Gaps = 130/486 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 694 GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 753
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESY---KAEVDNKDI 104
P ED+LV+N+AS++ C V R + + KDI
Sbjct: 754 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDI 813
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSI---------- 141
R + D L +Q ++G + + K A S+
Sbjct: 814 VAGMRVDENGDPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQS 873
Query: 142 ---------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
K E V +V++S D+ + V +RQ+ LGDKFSS HGQ
Sbjct: 874 AESHRETPAYYKGPEPSYVDQVMMSVGDNDQALIKVLLRQT----RRPELGDKFSSRHGQ 929
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV G + Q T ++LE GK G +G + Y T
Sbjct: 930 KGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELISGKAGVLNGSLEYGTC 989
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E +S++L G SG ++ C+ ++
Sbjct: 990 F----GGSKLED----MSKILVDHGFNYSGKDMLYSGITGECM--------------QAY 1027
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1028 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1087
Query: 346 GNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + A +V + ++G +C C S D +IK +PY AKLL QEL SM
Sbjct: 1088 QLLLERLMLSSDAFEVDVCSKCGLMGYNGWCTSCKSTDSVIKMTIPYAAKLLFQEL-LSM 1146
Query: 400 GITLKF 405
I +
Sbjct: 1147 NIAPRL 1152
>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
culisetae]
gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
Length = 899
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 173/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ I+P H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 515 SMILGICASIVPFPDHNQSPRNT----YQSAM-GKQAMGILLTNYQVRMDTLANLLYYPQ 569
Query: 60 RPLF------WILISDCLG--------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL +I S+ EDSL+MNQ+S++ G+FRS +++ +
Sbjct: 570 KPLATTHAMEYIKFSELPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYM 629
Query: 100 DNKD---------IQVKSRPSDDMLNFGKIQS-------------KSGDIVIGKYA---- 133
D +D + SR S L G + DI+IGK
Sbjct: 630 DEEDKLGMRTMGRFEKPSRASTLRLKIGTYEKLDDDGLIAPGTRVTGDDIIIGKTTPIPI 689
Query: 134 ---EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
E+G D S L+ TE G+V +VLL++N DG F V +R + +
Sbjct: 690 ASLELGQRTLAHTKLDASKPLRATESGIVDQVLLTTNGDGFKFVKVRVRST----RVPQI 745
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G + E P L+E L K A
Sbjct: 746 GDKFASRHGQKGTIGIVYTSEDMPFTADGIVPDLIINPHAIPSRMTIGHLIECLLSKLAT 805
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G + A+PF T I+ + L +G + G+ ++ + L+
Sbjct: 806 LVGTAADASPFTDVTVDAISAE--------LFSLGYHSRGLEVMYNGHSGRKLY------ 851
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
S +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 852 --------SQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 899
>gi|291386321|ref|XP_002709638.1| PREDICTED: RNA polymerase I polypeptide B isoform 2 [Oryctolagus
cuniculus]
Length = 1079
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 127/473 (26%), Positives = 182/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK E V D ++
Sbjct: 689 VTSYTGYDMEDAMIVNKASWERGFAHGSVYKTEFIDLSEKIKQGDDSLVFGVKPGDPRIL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
R DD L F + + GD G G + K E +V + + SND G F
Sbjct: 749 QRLDDDGLPFIGTKLQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKF 808
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 809 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSF--VSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S EQ+ + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPFTFS------EQNSALDHFGEMLKAAGYNFYGT 920
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 921 E---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 966
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 967 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLE 1026
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1027 KPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
AR2]
gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
AR2]
Length = 1115
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 204/480 (42%), Gaps = 107/480 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLF--YPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q F YPQ P
Sbjct: 640 ILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHFMLYPQVP 694
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
+ LG RP ED++V+++AS++ G+ R+ Y AE
Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCIVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAE 754
Query: 99 -------------VDNKDIQVKSRP--------SDDMLNFGKIQSKSGDIVIGK------ 131
+ N + ++ DD + + K GDI+IGK
Sbjct: 755 AKQYPGGMRDSFEIPNAEDNIRGYKGERAYRLLEDDGVVASEAPVKGGDILIGKTSPPRF 814
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G++ V+++ +++G + R + +
Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVIDTVVMTQSNEGGKMYKIRARD----MRIPEI 870
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGVLG L + A+ L + D L++ +A P + G ++ +S
Sbjct: 871 GDKFASRHGQKGVLGILAK--AEDLPYTASGMSPDVLINPHAFPSRMTVGMMM----ESI 924
Query: 242 VSQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+ G R G F+ + H F + E D +F +
Sbjct: 925 CGKAAALRGKRFDGSAFVGEKMPEVKEVMDAHGFEYSGKETMYDGRTGKSFPVD-VFIGV 983
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+GAS L +
Sbjct: 984 VYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKD 1043
Query: 351 RL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL +C VA +V QR CR+C + +V Y KLL QE+
Sbjct: 1044 RLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAFKLLLQEM 1100
>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1157
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 202/487 (41%), Gaps = 99/487 (20%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 685 ILGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 741
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS + C VFR Y AE
Sbjct: 742 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YTAE 799
Query: 99 VDNKDIQVKSR---PSDDM---------------LNFGKIQSKSGDIVIGKYAE------ 134
+ K R P D L Q +SG+ +I K
Sbjct: 800 LQQYANGRKDRLGGPQKDEEGRTIAKHACLDRDGLAIVGYQIRSGETMIMKETPVDVTST 859
Query: 135 -IGADH--------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
IG D + + + + KV++S+ + KN A++ ++ LGDK
Sbjct: 860 GIGGDRGSDAYVPAPVNYRINDPAYIDKVMVSNTE--KNTAIIKVQ--TRQTRRPELGDK 915
Query: 186 FSSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITE 236
FSS HGQKGV+G + E P + + + M+ F TG V+
Sbjct: 916 FSSRHGQKGVVGIIVNQEDMPFSDSGIVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAG 975
Query: 237 QHQ-----SFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ +F S + +G G ++ K YF + P + + +F
Sbjct: 976 RPDYGFGDAFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGNPHE---------AYLFNG 1026
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1027 PIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1086
Query: 350 ERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGIT 402
ERL + A + +C+ C S ++ + +PY AKLL QEL S ++G+
Sbjct: 1087 ERLMISSDATQVDVCEACGLFGYKGFCQTCQSTANVTQMTMPYAAKLLVQELISMNVGVR 1146
Query: 403 LKFDTQL 409
++ + +
Sbjct: 1147 MQLEDKF 1153
>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
Length = 1134
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 202/492 (41%), Gaps = 117/492 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+DTL+ + YPQ P+
Sbjct: 665 LLGVCAGLVPYPHHNQSPRN--TYQC-AMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMV 721
Query: 64 W---ILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 722 RSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIK 781
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK-----------SGDIVIGKYAEIGADHS------ 140
N+ P D L KI K G+ V+ K + +
Sbjct: 782 RYSNQTFDRIMGPMKDSLT-NKIIFKHECLDTDGIISPGEKVLSKQTMVNKEMPAVKSTN 840
Query: 141 ------------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
I K TE + KV++S+N++ + + +RQ+ +
Sbjct: 841 PIEQKEAGQQPITYSPVPITYKGTEPSYIEKVMVSTNNEEEFLVKILLRQT----RRPEI 896
Query: 183 GDKFSSMHGQKGVLGFL-EQ----------TPAQLLEA-------ALGK-----GACDGL 219
GDKFSS HGQKGV G + EQ +P ++ +GK G+ G+
Sbjct: 897 GDKFSSRHGQKGVTGLIVEQEDLPFNDFGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGV 956
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
+ + T+ GG + Q +L +G F+ K F + P++
Sbjct: 957 LEGKFHYGTAFGG---SKCQDLQDELFK------NGFNFLGKDIFYSGITGEPLEM---- 1003
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCL
Sbjct: 1004 -----YIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCL 1058
Query: 340 IAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
I++GAS + ERL +V NV R+ +C C S+ + K ++PY KLL Q
Sbjct: 1059 ISYGASMLIMERLMISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVSKISMPYACKLLFQ 1118
Query: 394 ELSFSMGITLKF 405
EL+ SM I +
Sbjct: 1119 ELT-SMNIVPRL 1129
>gi|359321637|ref|XP_003639648.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Canis lupus familiaris]
Length = 1135
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 187/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + DD L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPR 802
Query: 120 IQSKSGD---IVIGKYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGK- 163
I K D IG + G + L K E +V + + SND G
Sbjct: 803 ILQKLDDDGLPFIGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 863 RFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + +LL G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 ERLYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 171/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 531 SMILGICASIVPFPDHNQSPRN--TYQSAM-GKQAMGIYLTNFQLRMDTMANILYYPQKP 587
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 588 LVTTRAMEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRSLFYRSYMDQ 647
Query: 102 K------DIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKY------- 132
+ +++ +P+ DD L I+ DI+IGK
Sbjct: 648 EKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIIIGKTIPLSQDS 707
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 708 QELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMKFVKVRVRST----RIPQMGD 763
Query: 185 KFSSMHGQKGVLGFLEQTP--------------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G +T L+E LGK
Sbjct: 764 KFASRHGQKGTVGMTYRTEDMPFTFNGITPDIIINPHAIPSRMTIGHLVECLLGKVSTLT 823
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I S+LL G ++ G +F + L
Sbjct: 824 GDEGDATPFTDVTVEAI--------SKLLRENGFQSRGFEVMFNGHTGKKL--------- 866
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 867 -----QAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915
>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 1155
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 197/490 (40%), Gaps = 139/490 (28%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 692 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELID 751
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRP-- 110
P ED+LV+N++S++ G R + V IQ+K P
Sbjct: 752 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQV----VRKNTIQLKRYPNH 807
Query: 111 SDDMLN---------------------FGKIQSK--SGDIVIGKYAEIGADHSIKLKHTE 147
+ D+++ G+I ++ +G + K+ A S+ L H E
Sbjct: 808 TKDIVSGMRVDEDGEPIFPHKALGPDGLGEIGARVENGQVYANKFVPTNAGESV-LGHNE 866
Query: 148 R-------------------GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
+ V +V++S +D+ + V +RQ+ LGDKFSS
Sbjct: 867 QMAGAESHREAAAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSS 922
Query: 189 MHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMS 221
HGQKGV G + Q T +++E GK G +G +
Sbjct: 923 RHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLE 982
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
Y T F GG E +S++L G SG ++ CL
Sbjct: 983 YGTCF----GGSKLED----MSKILVEKGFSYSGKDMLYSGITGECL------------- 1021
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 341
++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA
Sbjct: 1022 -QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 1080
Query: 342 HGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
+GAS L ERL +V N + +C C S + +IK +PY AKLL QEL
Sbjct: 1081 YGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSFEHVIKMTIPYAAKLLFQEL 1140
Query: 396 SFSMGITLKF 405
SM I +
Sbjct: 1141 -LSMNIAPRL 1149
>gi|395853612|ref|XP_003799298.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Otolemur
garnettii]
Length = 1078
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 183/472 (38%), Gaps = 114/472 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD G Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYG-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGR 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPTEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S + + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFTFSENSAL-----EYFGEMLKAAGYNFYGTE 920
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 921 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 966
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 967 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEK 1026
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1027 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1077
>gi|291386319|ref|XP_002709637.1| PREDICTED: RNA polymerase I polypeptide B isoform 1 [Oryctolagus
cuniculus]
Length = 1135
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 127/472 (26%), Positives = 182/472 (38%), Gaps = 115/472 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK E V D ++
Sbjct: 745 VTSYTGYDMEDAMIVNKASWERGFAHGSVYKTEFIDLSEKIKQGDDSLVFGVKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
R DD L F + + GD G G + K E +V + + SND G F
Sbjct: 805 QRLDDDGLPFIGTKLQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSF--VSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S EQ+ + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFTFS------EQNSALDHFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|301781943|ref|XP_002926383.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Ailuropoda melanoleuca]
Length = 1079
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 185/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F Q + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAQLQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + +LL G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 RLYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|350581976|ref|XP_003481167.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sus scrofa]
Length = 1079
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 179/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 689 VISYTGYDMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVA 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q + GD G + K E +V + + ND G F
Sbjct: 749 QKLDDDGLPFVGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRF 808
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 809 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 921
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 922 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQ 968
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 969 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1028
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1029 PPSWSAMRNRKYSCSLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|350581974|ref|XP_003124849.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Sus
scrofa]
Length = 1135
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 179/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 745 VISYTGYDMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVA 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q + GD G + K E +V + + ND G F
Sbjct: 805 QKLDDDGLPFVGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 977
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 978 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1085 PPSWSAMRNRKYSCSLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|301781941|ref|XP_002926382.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Ailuropoda melanoleuca]
gi|281347779|gb|EFB23363.1| hypothetical protein PANDA_016030 [Ailuropoda melanoleuca]
Length = 1135
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 185/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F Q + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAQLQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + +LL G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
++ I+ I L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 RLYSG-------------ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|83415471|gb|ABC17943.1| RNA polymerase II second largest subunit, partial [Entomophthora
muscae]
Length = 726
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 169/416 (40%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ I+P H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 342 SMVLGICATIVPFPDHNQSPRNT----YQSAM-GKQAMGVYLTNYQLRMDTLANILYYPQ 396
Query: 60 RPLFWI-----------------LISDCL---GRPEDSLVMNQASLECGVFRSESYKAEV 99
+PL +++ C EDS++MNQ+S++ G+FRS Y+ +
Sbjct: 397 KPLVATRGMEFLRFRELPAGQNAIVAICCYSGYNQEDSVIMNQSSIDRGLFRSIYYRTYL 456
Query: 100 DNK------DIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
D + +++ +P+ DD L + DI+IGK A +
Sbjct: 457 DQEKKAGLVEMETFEKPTSATTLRLRHGTYEKLEDDGLIAPGTRVSGDDIIIGKTAPVPP 516
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S LK TE G+V +V+L+ N +G FA V +R + +
Sbjct: 517 DSEELGQRRHGQTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRST----RVPQI 572
Query: 183 GDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GA 215
GDKF+S HGQKG +G T ++E +GK G
Sbjct: 573 GDKFASRHGQKGTIGMTYRNEGMPFSAEGIVPDLVINPHAIPSRMTIGHMVECLVGKVGT 632
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
DG ATPF T +S LL G + G ++ + L
Sbjct: 633 LDGSEGDATPFTNVT--------VDGISGLLEKFGYQKRGFEVMYNGHTGKKLT------ 678
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 679 --------AQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 726
>gi|40644996|emb|CAD88981.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
Length = 260
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 113/242 (46%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L ++IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFETMYNGHTGRRL--------------SAMIFLGP 173
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 351 RL 352
RL
Sbjct: 234 RL 235
>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
Length = 1139
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 195/467 (41%), Gaps = 116/467 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQ 53
LLG+ G+IP Y SP QA+G N R+D+ L
Sbjct: 678 LLGVCAGLIP-------------YPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLY 724
Query: 54 QLFYPQRPLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE 93
L YPQRPL + +G ED+LV+N+AS++ G R
Sbjct: 725 NLVYPQRPLVKTRTIELIGFEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCL 784
Query: 94 SYKAEVDNKDIQVKSRPS-----DDMLNFGKIQSKSGDIV----------IGKYAEIGAD 138
Y+ N+ Q++ R + ++ ++ + +KSG+ + I E D
Sbjct: 785 VYR----NEKTQLQRRGTLVETIEERIDGPALDAKSGEKIRADECLDMDGIVAPGERVKD 840
Query: 139 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
+ + ++ + +V++S D +S RQ+ LGDKFSS HGQKGV G
Sbjct: 841 RAPTMAKSQPIHIERVMISE-DATWRMVKLSYRQT----RRPELGDKFSSRHGQKGVTGL 895
Query: 199 L---EQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
+ E P + G C D +M+ + P + G +L+ CIG++
Sbjct: 896 IVPQENMPFNEI------GMCPDVIMNPHGYPSRMTVG------------KLMECIGSKA 937
Query: 254 SGITFIFKHYFLF----------CLFECPMDWIAFICL--------VRSLIFTWITFYQQ 295
++ F + F + + ++ L + + IF +YQ+
Sbjct: 938 GALSGKFHYGTAFGGNTTEEMAQTMLDYGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQK 997
Query: 296 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK 355
HM DK+ R TG LT +P+ R + GG+ GEM+ D L+A+GAS L+ER
Sbjct: 998 LRHMVMDKMHARATGKVHNLTRQPLEGRAKDGGLRLGEMERDALLAYGASNLLNERFFYS 1057
Query: 356 NVANVIQRVVGG-------PYCRICNSADDIIKANVPYGAKLLSQEL 395
+ ++ + G +CR+C + + + N+PY KLL QEL
Sbjct: 1058 SDKYSVE-ICGNCGLHGYSGWCRVCRTGEHMASINMPYACKLLLQEL 1103
>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 194/486 (39%), Gaps = 130/486 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 694 GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 753
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRSESY---KAEVDNKDI 104
P ED+LV+N+AS++ C V R + + KDI
Sbjct: 754 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDI 813
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSI---------- 141
R + D L +Q ++G + + K A S+
Sbjct: 814 VAGMRVDENGEPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQS 873
Query: 142 ---------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 192
K E + +V++S D+ + V +RQ+ LGDKFSS HGQ
Sbjct: 874 AESHRETPAYYKGPEPSYIDQVMMSVGDNDQALIKVLLRQT----RRPELGDKFSSRHGQ 929
Query: 193 KGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATP 225
KGV G + Q T ++LE GK G +G + Y T
Sbjct: 930 KGVCGIIVQQEDLPFNDDGITPDIIMNPHGFPSRMTVGKMLELISGKAGVLNGSLEYGTC 989
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
F GG E +S++L G SG ++ C+ ++
Sbjct: 990 F----GGSKLED----MSKILVDHGFNYSGKDMLYSGITGECM--------------QAY 1027
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1028 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1087
Query: 346 GNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
L ERL + A +V + ++G +C C S D +IK +PY AKLL QEL SM
Sbjct: 1088 QLLLERLMLSSDAFEVDVCSKCGLMGYNGWCTSCKSTDSVIKMTIPYAAKLLFQEL-LSM 1146
Query: 400 GITLKF 405
I +
Sbjct: 1147 NIAPRL 1152
>gi|409722465|ref|ZP_11269915.1| DNA-directed RNA polymerase subunit B' [Halococcus hamelinensis
100A6]
gi|448722477|ref|ZP_21705011.1| DNA-directed RNA polymerase subunit B' [Halococcus hamelinensis
100A6]
gi|242392328|dbj|BAH80345.1| RNA polymerase subunit B' [Halococcus hamelinensis 100A6]
gi|445789202|gb|EMA39891.1| DNA-directed RNA polymerase subunit B' [Halococcus hamelinensis
100A6]
Length = 613
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 202/493 (40%), Gaps = 111/493 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N IR DT L YP
Sbjct: 138 LMFGIGAGMIPYPEHNASPRITMGSGMIKQS-------LGLPSANYRIRPDTRQHLLHYP 190
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q + ++ +G RP ED+LV+N S++ + RS ++
Sbjct: 191 QLSMVKTQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVLNGGSIDRALGRSHFFRTY 250
Query: 98 ---------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ + D+ + + +D L + + +++GK +
Sbjct: 251 EGEERRYPGGQEDRFEIPDDDVRGARGEEAYTHLDEDGLVNPETEVSESAVLLGKTSPPR 310
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + VS+R
Sbjct: 311 FLEEPNDMGGLSPQKRRETSVTMRSGEAGVVDTVTLMQGEDGSKLSKVSVRDE----RIP 366
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQH 238
LGDKF+S HGQKGV+G + P + + +G L+ +A P + G V+
Sbjct: 367 ELGDKFASRHGQKGVIGHI--APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHVL---- 419
Query: 239 QSFVSQLLNCIGARNSGITFI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFT 288
+ ++ + G R G F + L + D + + + IF
Sbjct: 420 EMLGGKVGSLEGRRVDGTAFTGEEEEELRGALEDHGFDSSGKERMYSGVTGEKIDAEIFV 479
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L
Sbjct: 480 GTIFYQKLYHMVSNKIHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMAL 539
Query: 349 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL C N V NV QR V YC C DI + + Y KLL
Sbjct: 540 KERLLDESDREFIYVCGNCGMSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLD 596
Query: 394 ELSFSMGITLKFD 406
E+ ++GI + D
Sbjct: 597 EMK-ALGIAPRLD 608
>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 1189
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 137/499 (27%), Positives = 202/499 (40%), Gaps = 128/499 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL + YPQ+P+
Sbjct: 713 ILGAVAGLIPYPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFTRIDTLLYLMVYPQQPMV 769
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYK------- 96
+ + ED+LV+N+AS + G R + +K
Sbjct: 770 KTRTIELIKYDKLPAGQNATVAVMSYSGYDIEDALVINKASCDRGFGRCQVFKKATTTLK 829
Query: 97 ------------AEVDNKDIQVKSR-----PSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E + V R SD + G + K D+ + K+ + +
Sbjct: 830 SYANGSQDKITGPERNADGTPVNPRHKKVGESDGIAEVGMLLEKD-DVYLNKFVPVQTN- 887
Query: 140 SIKLKHTER-------------------GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
+ L+ +R V KVLL+ N+ + RQ+
Sbjct: 888 PVGLEEQQRRKQPTEFRPTPMSYKLPDPAYVDKVLLTENESNTPVIKIQTRQT----RRP 943
Query: 181 CLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK- 213
LGDKFSS HGQKGV+G + + T ++LE GK
Sbjct: 944 ELGDKFSSRHGQKGVVGIIAEQIDMPFNDQGICPDIIMNPHGFPSRMTVGKMLELLSGKA 1003
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
G +G + Y T F GG E +SQ+L G SG +
Sbjct: 1004 GVMNGELQYGTCF----GGSKAED----MSQILLEAGFSYSGKDML-------------T 1042
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
I CL + F I +YQ+ HM +DK+ R G LT +P R R GG+ GE
Sbjct: 1043 SGITGECLPAYVFFGPI-YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGE 1101
Query: 334 MKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYG 387
M+ DCLIA+GAS L ERL + A +V +R ++G +C+ C S+ +++ +PY
Sbjct: 1102 MERDCLIAYGASQLLLERLMLSSDAHECDVCERCGMMGYQGWCQSCRSSKGVVRMTIPYA 1161
Query: 388 AKLLSQE-LSFSMGITLKF 405
AKLL QE LS ++ +LK
Sbjct: 1162 AKLLIQELLSMNVKASLKL 1180
>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
sativus]
Length = 1158
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 137/496 (27%), Positives = 199/496 (40%), Gaps = 119/496 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + YQ QA+G N R+DTLL L YPQRPL
Sbjct: 683 ILGVVAGLIPYPHHNQSPRNT--YQCA-MGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLL 739
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFR---SESY 95
+ +G ED++VMN++SL+ C VF+ S +
Sbjct: 740 TTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQ 799
Query: 96 KAEVDNKDIQVKSRPSDDMLNFGKIQSKSG-----------DIVIGKYAEIGADHS---- 140
K E + D V+ ++D +I G DI + K + I S
Sbjct: 800 KYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMKGSPLPG 859
Query: 141 ------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
K E +V +V LS++ + + I+ + LGDKFSS
Sbjct: 860 IPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKND----CLCIKFLIRQTRRPELGDKFSS 915
Query: 189 MHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMS 221
HGQKGV G + Q T +++E GK G G
Sbjct: 916 RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 975
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
Y + F +G H V + + R G ++ K + + CP+
Sbjct: 976 YGSAFGEPSG------HADKVDAISETLIKR--GFSYNGKDFLYSGITGCPL-------- 1019
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 341
++ IF +YQ+ HM DK+ R +G LT +P R R GG+ GEM+ DCLIA
Sbjct: 1020 -QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1078
Query: 342 HGASGNLHERLKCKNVANVIQ--RVVG--GPY--------CRICNSADDIIKANVPYGAK 389
+GAS ++ERL + +Q RV G G Y C C + D+I +PY K
Sbjct: 1079 YGASMLIYERLMISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACK 1138
Query: 390 LLSQELSFSMGITLKF 405
LL QEL SM I +
Sbjct: 1139 LLIQELQ-SMNIVPRL 1153
>gi|83415479|gb|ABC17947.1| RNA polymerase II second largest subunit, partial [Zancudomyces
culisetae]
Length = 718
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 172/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ I+P H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 334 SMILGICASIVPFPDHNQSPRNT----YQSAM-GKQAMGILLTNYQVRMDTLANLLYYPQ 388
Query: 60 RPLF------WILISDCLG--------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL +I S+ EDSL+MNQ+S++ G+FRS +++ +
Sbjct: 389 KPLATTHAMEYIKFSELPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYM 448
Query: 100 DNKD---------IQVKSRPSDDMLNFGKIQS-------------KSGDIVIGKYA---- 133
D +D + SR S L G + DI+IGK
Sbjct: 449 DEEDKLGMRTMGRFEKPSRASTLRLKIGTYEKLDDDGLIAPGTRVTGDDIIIGKTTPIPI 508
Query: 134 ---EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
E+G D S L+ TE G+V +VLL +N DG F V +R + +
Sbjct: 509 ASLELGQRTLAHTKLDASKPLRATESGIVDQVLLXTNGDGFKFVKVRVRST----RVPQI 564
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G + E P L+E L K A
Sbjct: 565 GDKFASRHGQKGTIGIVYTSEDMPFTADGIVPDLIINPHAIPSRMTIGHLIECLLSKLAT 624
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G + A+PF T I+ + L +G + G+ ++ + L+
Sbjct: 625 LVGTAADASPFTDVTVDAISAE--------LFSLGYHSRGLEVMYNGHSGRKLY------ 670
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
S +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 671 --------SQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 718
>gi|83415481|gb|ABC17948.1| RNA polymerase II second largest subunit, partial [Coemansia
reversa]
Length = 722
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 170/400 (42%), Gaps = 85/400 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ I+P + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 338 SMILGICASIVPFPDHNQSPRN--TYQSAM-GKQAMGIMLTNYQLRMDTLANVLYYPQKP 394
Query: 62 LFWILISD------------------CLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L D C G EDS++MNQ+S+E G+FRS +Y E
Sbjct: 395 LATTRAMDYLKFRDLPAGQNAIVAIMCYGGYNQEDSVIMNQSSIERGLFRSLYFRTYHDE 454
Query: 99 VD---NKDIQVKSRPSDDM---LNFGKIQSKSG-------------DIVIGKYAEIGADH 139
D +K++ +P+ D L G + G DI+IGK I D
Sbjct: 455 EDKLGSKELGTFEKPTPDTTLRLKHGTYEKLEGDGLIAPGTRVTGDDIIIGKTTAIPPDS 514
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N DG F V IR + +GD
Sbjct: 515 LELGQRTKSHSKIDASKALRSTECGIVDQVMMTTNGDGFKFVKVRIRST----RVPQMGD 570
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFV 242
KF+S HGQKG +G +T A +G ++ +A P + G ++ + +
Sbjct: 571 KFASRHGQKGTIGITYRTEDMPFSA---EGIVPDIIINPHAIPSRMTVGHLV----ECLL 623
Query: 243 SQLLNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
S+L + + F + H + FE + L + +F T
Sbjct: 624 SKLSTLMASEGDATPFTDVTVEAISRELLGHGYQPRGFEVMYNGHTGRKLA-AQVFLGPT 682
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 683 YYQRLKHMVDDKIHSRARGPLQILTRQPVEGRARDGGLRF 722
>gi|40642974|emb|CAD89599.1| RNA polymerase II, second largest subunit [Borago officinalis]
Length = 355
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 152/378 (40%), Gaps = 108/378 (28%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFW------------------ILISDCLG--RP 74
QA+G TN R+DTL L+YPQ+PL I+ C
Sbjct: 4 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ 63
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY+ E + V+ RP D
Sbjct: 64 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMETLVREDFGRPDRANTMGMRHGSYDKLDD 123
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSN 159
D L + D++IGK I D HS ++H+E G+V +VLL++N
Sbjct: 124 DGLAPPGTRVAGEDVIIGKTTPINQDEAQGQASRYTRRDHSTSMRHSENGMVDQVLLTTN 183
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 184 ADGLRFVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGTTPDIIVN 239
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 240 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 291
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 292 MRGFETMYNGHTGRRLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGPV 337
Query: 313 QPLTGRPVADRKRFGGIE 330
Q LT +P R R GG+
Sbjct: 338 QILTRQPAEGRSRDGGLR 355
>gi|284162088|ref|YP_003400711.1| RNA polymerase Rpb2 domain 6 [Archaeoglobus profundus DSM 5631]
gi|284012085|gb|ADB58038.1| RNA polymerase Rpb2 domain 6 [Archaeoglobus profundus DSM 5631]
Length = 603
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 185/447 (41%), Gaps = 101/447 (22%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG------RP-------------- 74
Q++G P ++ + R DT + YPQ P I+ +D RP
Sbjct: 159 QSLGLPYSSLHWRTDTRGHLMHYPQIP---IVTTDTQKEIRFDERPAGQNFVVAVLSYEG 215
Query: 75 ---EDSLVMNQASLECGVFRS---ESYKAE-------------------VDNKDIQVKSR 109
ED++++N+AS++ G+ R+ +Y+AE D + +
Sbjct: 216 YNIEDAIILNKASVDRGLARTHFFRTYEAEELRYPGGQEDRFEIPPSDVADYRGAEAYKN 275
Query: 110 PSDDMLNFGKIQSKSGDIVIGKYA--------------EIGADHSIKLKHTERGLVLKVL 155
+D L F + + D++IG+ + + + SI ++ E+G+V V
Sbjct: 276 LDEDGLIFPETEVGPDDVLIGRTSPPRFLEEPTLGISPQKRRESSITMRSNEKGIVDAVF 335
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGA 215
L ++ G A V +R + +GDKF+S HGQKGV+G + P + +
Sbjct: 336 LMQSESGSKLAKVRVRD----LRIPEIGDKFASRHGQKGVVGLI--VPEEDMPWTESGIV 389
Query: 216 CDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCI-GARNSGITF----------IFKHY 263
D +++ +A P + G ++ + + C+ G R G F + K Y
Sbjct: 390 PDMIINPHAIPSRMTVGHIL-----EMIGGKVGCLEGRRVDGTIFHGEKEKDLREVLKKY 444
Query: 264 -FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 322
F+ E D I IF + +YQ+ HM +K+ R+ G Q LT +P
Sbjct: 445 GFVHTGKEVMYDGITGKRFEVD-IFVGVIYYQKLYHMVANKIHARSRGPVQILTRQPTEG 503
Query: 323 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY 369
R R GG+ GEM+ D LI HGA+ L +RL KC +VA R Y
Sbjct: 504 RARKGGLRLGEMERDVLIGHGAALLLKDRLLEESDKVEVWVCAKCGHVATYDYR-RNTAY 562
Query: 370 CRICNSADDIIKANVPYGAKLLSQELS 396
C +C + K + Y KLL EL
Sbjct: 563 CHVCEDDSHVYKVEMSYAFKLLLDELK 589
>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
Length = 942
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 167/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT++ L+YPQ+P
Sbjct: 558 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGVCLTNYELRMDTMVNVLYYPQKP 614
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L I+ C EDS++MNQ+S++ G+FRS Y++ D
Sbjct: 615 LATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 674
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P DD + ++ DI+IGK A I D
Sbjct: 675 EKKVGMAVVEQFEKPMRSDTMRLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDA 734
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V VLL++N DG F V R + +GD
Sbjct: 735 EELGQRTKMHIKRDVSTPLRSTENGIVDSVLLTTNSDGLKFVKVRTRTT----KIPQIGD 790
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 791 KFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLSKVGALR 850
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ + L
Sbjct: 851 GXEGDATPFTDVT--------VXQVSSLLREHGYQSRGFEIMYNGHTGKKLT-------- 894
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 895 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 942
>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
10762]
Length = 1214
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 197/483 (40%), Gaps = 126/483 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 759 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVSTRAIELVK 818
Query: 73 RP--------------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPS- 111
ED+LV+N+AS + G R + +K ++Q+K+ +
Sbjct: 819 YDKLPAGQNAIVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFK----KINVQLKTYGNG 874
Query: 112 --------DDM----LNFGK-------IQSKSGD------------IVIGKYAEIGADHS 140
DD + GK +Q +GD + + A+I A
Sbjct: 875 ATDRVTGRDDANPKHVKLGKDGIIEAGMQLAAGDTYMLKEKPLQQSVSVAASAQIWAPEH 934
Query: 141 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE 200
+ K + KV++ + + + RQ+ +GDKFSS HGQKGV+G +
Sbjct: 935 MSYKLPDPCYADKVMVGTTESNHTIFKIQTRQT----RRPEVGDKFSSRHGQKGVVGIIA 990
Query: 201 Q-----------TP---------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 233
+ TP ++LE GK G G Y T F G
Sbjct: 991 EQADMPFSDSGITPDIIMNPHGFPSRMTVGKMLELVAGKAGVLKGTQEYGTAFG---GSK 1047
Query: 234 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 293
+ E + Q G ++ K +C I L + F I +Y
Sbjct: 1048 VEEMGNELIRQ----------GFSYSGK--------DCVTSGITGESLPAYVFFGPI-YY 1088
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 353
Q+ HM +DK+ R+TG LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1089 QKLKHMVQDKMHARSTGPRAILTRQPTEGRSRAGGLRLGEMERDCLIAYGASQLLLERLM 1148
Query: 354 CKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFD 406
+ A+ + ++G +C C+S+ ++K +PY AKLL QE LS ++ +L+ +
Sbjct: 1149 LSSDAHEVDVCETCGMMGYNNWCTSCSSSVGVVKMTMPYAAKLLIQELLSMNVKASLQLE 1208
Query: 407 TQL 409
+
Sbjct: 1209 DEF 1211
>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
koreensis AR1]
Length = 1115
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 204/480 (42%), Gaps = 107/480 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLF--YPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q F YPQ P
Sbjct: 640 ILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHFMLYPQVP 694
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA---- 97
+ LG RP ED++V+++AS++ G+ R+ Y+
Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFYRIYDAE 754
Query: 98 ------------EVDNKDIQVKSRP--------SDDMLNFGKIQSKSGDIVIGK------ 131
E+ N + ++ +D + + K GDI+IGK
Sbjct: 755 AKQYPGGMRDAFEIPNAEDNIRGYKGERAYRLLEEDGVVAAEAPVKGGDILIGKTSPPRF 814
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G+V V+++ +++G + R + +
Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARD----MRIPEI 870
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKG+LG L + A+ L + D L++ +A P + G ++ +S
Sbjct: 871 GDKFASRHGQKGILGILAK--AEDLPYTASGMSPDVLINPHAFPSRMTVGMMM----ESI 924
Query: 242 VSQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+ G R G F+ + H F + E D +F +
Sbjct: 925 CGKSAALRGKRFDGSAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVE-VFIGV 983
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+GAS L +
Sbjct: 984 VYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKD 1043
Query: 351 RL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL +C VA +V QR CR+C + +V Y KLL QE+
Sbjct: 1044 RLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAFKLLLQEM 1100
>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
hordei]
Length = 1169
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 193/494 (39%), Gaps = 136/494 (27%)
Query: 4 LLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+LG G+IP H Q+ + YQ QA+ N +R+DTLL + YPQ+P
Sbjct: 695 ILGAVAGLIPYPHHNQSPRLT----YQCAM-GKQAVSAIAYNQFLRIDTLLYLMVYPQQP 749
Query: 62 LFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYK----- 96
+ D +G ED+L++N+ASL+ G R ++ K
Sbjct: 750 MVKTRTIDLIGYDKLPAGQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTI 809
Query: 97 --------------AEVDNKDIQVKSR----PSDDMLNFGKIQSKSGDIVIGKYAEIGAD 138
A VD + + R +D + G+ + + GD+ + K + A+
Sbjct: 810 LRKYPNGTHDRLADAPVDESTGKRQKRYDILEADGIAGVGE-RVEQGDVFVNKQTPVNAN 868
Query: 139 HS----------------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 176
+ + K G V +VL++ D + IRQ+
Sbjct: 869 DNSSAAIMIGASNAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALIRQT--- 925
Query: 177 VHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAA 210
LGDKFSS HGQKGV G + T +++E
Sbjct: 926 -RRPELGDKFSSRHGQKGVCGLIVNQEDMPFSDQGINPDIIMNPHGFPSRMTVGKMIELL 984
Query: 211 LGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFC 267
GK G G + Y T F G + + Q V N G SGIT
Sbjct: 985 SGKAGVITGNLQYGTAFG---GSKVEDMSQILVDHGYNYGGKETLTSGITG--------Q 1033
Query: 268 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 327
EC ++ +YQ+ HM +DK+ R G LT +P R R G
Sbjct: 1034 PLEC-------------YVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDG 1080
Query: 328 GIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI---QR--VVG-GPYCRICNSADDIIK 381
G+ GEM+ DCLI +GA+ L ERL + A + QR ++G +C C S ++K
Sbjct: 1081 GLRLGEMERDCLIGYGATQLLLERLMISSDAFTVHACQRCGLMGYNGWCPFCGSGKHVVK 1140
Query: 382 ANVPYGAKLLSQEL 395
+PYG KL+ QEL
Sbjct: 1141 LTIPYGTKLMLQEL 1154
>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
Length = 1171
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 130/470 (27%), Positives = 189/470 (40%), Gaps = 108/470 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + K S +IG+ N R DT+L + YPQRPL
Sbjct: 715 MLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLN---RCDTILHLMVYPQRPLV 771
Query: 64 W---ILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK---AEVD 100
I + + P ED++V+N+AS E G R S + E++
Sbjct: 772 TTKAIQLVNFDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIE 831
Query: 101 NKDIQVKSRP-----SDDMLNFGKIQSKSGDIVIGKYAEIGADHSI--KLKHTERGL--V 151
+ RP + N + +GD VIG ++ D ++ KL T G V
Sbjct: 832 KLN-HAAERPGGLNNRPQITNVTPVDDLTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKV 890
Query: 152 LKVLLSSNDDG---KNFAVVSIRQSV------NMVHSACLGDKFSSMHGQKGVLGFLEQ- 201
+ N + + +I +SV V +GDK+SS HGQKGV+G +E
Sbjct: 891 TDIKYQFNQPAYVDRVMCITTIAESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQ 950
Query: 202 -------------------------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVIT 235
T ++LE K A +G+ TPF + I
Sbjct: 951 ENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLELVAAKAAVLNGIFEDGTPFEADSLPAI- 1009
Query: 236 EQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 293
+S + + + G SGIT P++ +LIFT +Y
Sbjct: 1010 --ERSLIKKGFHPAGKEILYSGIT------------GEPLE---------TLIFTGPMYY 1046
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 353
Q+ HM DK+ R G Q LT +P R + GG+ GEM+ DCLIA+GASG L ERL
Sbjct: 1047 QKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASGLLVERLM 1106
Query: 354 CKNVANVIQRVV--------GGPYCRICNSADDIIKANVPYGAKLLSQEL 395
++V Q V +C C +PY KLL QEL
Sbjct: 1107 LS--SDVFQMDVCHQCGFIGYDGWCAYCKQRGQTATVAIPYACKLLFQEL 1154
>gi|338713977|ref|XP_003362990.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
caballus]
Length = 924
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 185/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 475 MYQCQM-GKQTMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 533
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 534 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIV 593
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F Q + GD Y + S + K E +V + + SND G
Sbjct: 594 QKLDDDGLPFIGAQLQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 652
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 653 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 710
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 711 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 766
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 767 RLYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN 812
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 813 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 872
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 873 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 923
>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 1155
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 135/489 (27%), Positives = 195/489 (39%), Gaps = 137/489 (28%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 692 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELID 751
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRP-- 110
P ED+LV+N+AS++ G R + V IQ+K P
Sbjct: 752 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQV----VRKNTIQLKRYPNH 807
Query: 111 SDDMLN---------------------FGKIQSK--SGDIVIGKYAEIGADHSI------ 141
+ D+L+ G++ ++ +G I K+ A S
Sbjct: 808 TKDILSGMRVDEHGNPIFPHQALGPDGLGEVGARIENGQIYANKFVPTNAGESALGGASE 867
Query: 142 ------------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
K E V +V++S +D+ + V +RQ+ LGDKFSS
Sbjct: 868 PTNVESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSR 923
Query: 190 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 222
HGQKGV G + Q T +++E GK G +G + Y
Sbjct: 924 HGQKGVCGIIVQQEDLPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEY 983
Query: 223 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 282
T F GG E +S++L G SG ++ CL
Sbjct: 984 GTCF----GGSKLED----MSKILVDKGFSYSGKDMLYSGITGECL-------------- 1021
Query: 283 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAH 342
++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+
Sbjct: 1022 QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAY 1081
Query: 343 GASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELS 396
GAS L ERL ++ N + +C C S+++IIK +P AKLL QEL
Sbjct: 1082 GASQLLLERLMISSDAFEVDICNKCGLMGYNSWCTTCKSSENIIKMTIPCAAKLLFQEL- 1140
Query: 397 FSMGITLKF 405
SM I +
Sbjct: 1141 LSMNIAPRL 1149
>gi|338713979|ref|XP_003362991.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
caballus]
Length = 1079
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 185/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIV 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F Q + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAQLQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 RLYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|440910777|gb|ELR60535.1| DNA-directed RNA polymerase I subunit RPA2 [Bos grunniens mutus]
Length = 1135
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 180/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLVFGVKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F Q K GD G + K E +V + + SND G F
Sbjct: 805 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 977
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 978 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I ++PY + EL+ +M I +K D
Sbjct: 1085 PPSWSALRNRKYNCALCNRSDTIDTISLPYVFRYFVAELA-AMNIKVKLD 1133
>gi|149727186|ref|XP_001495511.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Equus caballus]
Length = 1135
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 185/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIV 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F Q + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAQLQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F + I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCICI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 RLYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|342179780|emb|CCC89254.1| putative DNA-directed RNA polymerase III [Trypanosoma congolense
IL3000]
Length = 1137
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 200/480 (41%), Gaps = 79/480 (16%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL- 62
LLG+ GIIP + + +QS QA+G N IR+DT+L YPQRPL
Sbjct: 671 LLGVVAGIIPFPHHNQSARNT--FQSAM-GKQALGTIGYNQYIRMDTVLMLGIYPQRPLC 727
Query: 63 ----FWILISDCLGRP---------------EDSLVMNQASLE-----CGVFRSESYKAE 98
+ + LG ED+ V N+ SL+ C V R + E
Sbjct: 728 RTKAMNLTNYESLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCIVLRKHEVELE 787
Query: 99 ------------VDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA----DHSIK 142
D+ + ++ SD + + G I + DI++ KY + + + +
Sbjct: 788 RLPHGEYDIVLPADSNAGKYRALNSDGIASKGAI-VRQFDILVNKYTPVPSLEPRPNPLV 846
Query: 143 LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL----GDKFSSMHGQKGVLGF 198
K+ + +V V++S D + + Q + +V GDKFSS HGQKGV+G
Sbjct: 847 YKYPQPAVVDHVVISPPGDSDR--SMDVEQKIKVVTREVRIPEPGDKFSSRHGQKGVVGL 904
Query: 199 LEQTPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLNCIGARNSGIT 257
+ +G C ++ F + T G + E S VS L G G
Sbjct: 905 ITDGVNMPFNE---QGICPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGRFG---DGTA 958
Query: 258 F-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 306
F + +H F + + I L + F I +YQ+ HM DKV
Sbjct: 959 FGGDKAEDMGEELLRHGFNYHGKDVFYSGITGEKLHGHVFFGPI-YYQRLKHMVTDKVHA 1017
Query: 307 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RV 364
R TG LT +P R R GG+ GEM+ DC++ +GAS L+ERL + + R
Sbjct: 1018 RATGPRSMLTRQPTEGRSRNGGLRVGEMERDCMVGYGASKLLYERLLVSSDLFTVDICRS 1077
Query: 365 VG----GPYCRICNSADDIIKANVPYGAKLLSQELS---FSMGITLKFDTQLSGVSMAAV 417
G YC C++ + + + NVPY KLL QEL S +TL F SG S V
Sbjct: 1078 CGFLGYSGYCSYCSTRNSVSRVNVPYAFKLLLQELQGMGISARLTLDFIGPQSGSSNEVV 1137
>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
Length = 908
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 172/420 (40%), Gaps = 113/420 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 518 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKP 574
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L ED ++MNQ+S++ G+FRS Y++ +D
Sbjct: 575 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDFVIMNQSSIDRGLFRSIYYRSYMDL 634
Query: 101 ---------------NKDIQVK------SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+D ++ + DD L K DI+IGK A I D
Sbjct: 635 EKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPPDS 694
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 695 EELGQRTRTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRST----RIPQIGD 750
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 751 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLI 810
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 811 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKL--------- 853
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
++ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 854 -----QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 908
>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
Length = 1142
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 190/480 (39%), Gaps = 124/480 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 682 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 741
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVD--------NKDI 104
P ED+LV+N++S++ G R E+ + +DI
Sbjct: 742 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKNTTVLKRYPNHTQDI 801
Query: 105 --------------QVKSRPSDDMLNFG------------KIQSKSGDIVIGKYAEIGAD 138
Q K D + G I + SGD V+ +
Sbjct: 802 IGGMRVDENGEPIWQHKCLGPDGLGEVGMKLDSGQIYINKSIPTNSGDGVLTNTQSQYKE 861
Query: 139 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
+ + E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 862 TPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGI 917
Query: 199 L--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ T +++E GK G +G + Y T F G
Sbjct: 918 IVKQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF----G 973
Query: 232 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
G E ++++L G SG ++ CL ++ IF
Sbjct: 974 GSKLED----MTKILVDNGFNYSGKDMLYSGITGECL--------------QAYIFFGPI 1015
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ER
Sbjct: 1016 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1075
Query: 352 LKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
L +V N + +C C SA++I K +PY AKLL QEL SM I +
Sbjct: 1076 LMISSDAFEVDVCNKCGLMGYSGWCTTCRSAENINKMTIPYAAKLLFQEL-LSMNIAPRL 1134
>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 1159
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 131/485 (27%), Positives = 191/485 (39%), Gaps = 129/485 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + +
Sbjct: 696 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKSKTIELIE 755
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEV--------DNKDI 104
P ED+LV+N++S++ G R + + KDI
Sbjct: 756 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRKNTIVLKRYPNHTKDI 815
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHT----- 146
R + D L ++ ++G + K A S+ H
Sbjct: 816 VAGMRVDENGDPIFAHNALGPDGLGEVGMRIENGQVYANKQVPTNAGESVLGDHNQPQSA 875
Query: 147 -------------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
E V +V++S +D+ + V +RQ+ LGDKFSS HGQK
Sbjct: 876 ESHRETPAYYRGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQK 931
Query: 194 GVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPF 226
GV G + Q T +++E GK G +G + Y T F
Sbjct: 932 GVCGIIVQHEDMPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF 991
Query: 227 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 286
GG E +S++L G SG ++ CL ++ I
Sbjct: 992 ----GGSKLED----MSKILVDKGFNYSGKDMLYSGITGECL--------------QAYI 1029
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F +YQ+ HM DK+ R+ G LT +P R R GG+ GEM+ DC+IA+GAS
Sbjct: 1030 FFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQ 1089
Query: 347 NLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMG 400
L ERL +V N + +C C S++ +IK +PY AKLL QEL SM
Sbjct: 1090 LLLERLMISSDAFEVDVCNNCGLMGYSSWCSTCKSSEHVIKMTIPYAAKLLFQEL-LSMN 1148
Query: 401 ITLKF 405
I +
Sbjct: 1149 IAPRL 1153
>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
Length = 1134
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 128/499 (25%), Positives = 198/499 (39%), Gaps = 125/499 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+DTL+ + YPQ P+
Sbjct: 665 LLGVCAGLVPYPHHNQSPRN--TYQC-AMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMV 721
Query: 64 W---ILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 722 RSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIK 781
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK-----------SGDIVIGKYAEIGADHS------ 140
N+ P D L GK+ ++ G+ ++ K + +
Sbjct: 782 RYSNQTFDRIMGPMKDSLT-GKVIARHECLDTDGIVSPGERLVCKQTMVNKEMPAVKSNN 840
Query: 141 ------------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
I K TE +VL+S+N++ + + +RQ+ +
Sbjct: 841 PIEQKESGQQPIAYSAVPITYKGTEPSYAERVLVSTNNEEEFLVKILLRQT----RRPEI 896
Query: 183 GDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GA 215
GDKFSS HGQKGV G + T + LE K G
Sbjct: 897 GDKFSSRHGQKGVTGLIVDQEDLPFNDYGMAPDMVMNPHGFPSRMTVGKTLELLGSKAGV 956
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
+G Y T F GG + Q + Q +G ++ K F + P++
Sbjct: 957 LEGKFHYGTAF----GGSKCQDLQDELFQ---------NGFNYLGKDVFYSGITGEPLE- 1002
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+
Sbjct: 1003 --------VYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEME 1054
Query: 336 CDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAK 389
DCLI++GAS + ERL +V NV R+ +C C S+ + K ++PY K
Sbjct: 1055 RDCLISYGASMLIMERLMISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVSKISMPYACK 1114
Query: 390 LLSQELSFSMGITLKFDTQ 408
LL QEL+ SM I + Q
Sbjct: 1115 LLFQELT-SMNIVPRLKLQ 1132
>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
ATCC 30864]
Length = 1729
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 181/415 (43%), Gaps = 91/415 (21%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G +N +R+DT+ L+YPQ+P
Sbjct: 729 AMILGVCASIIPFPDHNQSPRN--CYQSAM-GKQAMGVYISNFQVRLDTMSHTLYYPQKP 785
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + IS G EDS+VMNQ++++ G+FRS SYK E
Sbjct: 786 LTTTRSMEYLHFDSLPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFRSLFYRSYKDE 845
Query: 99 VDNKDIQVK----SRPSDDML------NFGKIQSK---------SGD-IVIGKYAEI--- 135
V + V +PS +++ ++ K+ + SGD +IGK I
Sbjct: 846 VKPAGLDVGDEEFEKPSLEIVAGMRHSSYDKLDADGLVAPGTRVSGDDFIIGKTTPIPDE 905
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+ TE G+V V+LS N+DG F V +R + +G
Sbjct: 906 KNELAQTMKRYRKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRG----IRIPQIG 961
Query: 184 DKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSF 241
DKF+S HGQKG G + A +G ++ +A P + G +I E Q
Sbjct: 962 DKFASRHGQKGTCGITYRQEDMPYNA---EGITPDIIINPHAIPSRMTIGHLI-ECLQGK 1017
Query: 242 VSQLLNCIGAR---NSGIT----------FIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
V+ L IG N+ +T F + Y LF + + ++
Sbjct: 1018 VAALTGKIGDATPFNTDVTVKSIADLLKEFRYHPYGNEVLFNGHTGK-----KMNTQVYF 1072
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 343
T+YQ+ HM +DK+ R G LT +PV R R GG+ FGEM+ DCL HG
Sbjct: 1073 GPTYYQRLKHMVDDKIHSRQRGPLTNLTRQPVEGRARDGGLRFGEMERDCL--HG 1125
>gi|335438707|ref|ZP_08561443.1| DNA-directed RNA polymerase subunit B [Halorhabdus tiamatea SARL4B]
gi|334890829|gb|EGM29089.1| DNA-directed RNA polymerase subunit B [Halorhabdus tiamatea SARL4B]
Length = 608
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 127/495 (25%), Positives = 206/495 (41%), Gaps = 111/495 (22%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P+ N +R DT L YP
Sbjct: 133 LIFGIGAGMIPYPEHNASPRITMGSGMIKQS-------LGLPSANYRVRPDTRQHLLHYP 185
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESY 95
Q + ++ +G RP ED+LVMN+ S+E + RS +Y
Sbjct: 186 QLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVMNKGSVERALARSHFFRTY 245
Query: 96 KAE-----------VDNKDIQVK-SRPSD-----DMLNFGKIQSKSGD--IVIGKYA--- 133
+ E + D +V+ +R D D ++K G+ +++GK +
Sbjct: 246 EGEERRYPGGQEDRFEIPDDEVRGARGEDAYTHLDEDGLVNPETKVGENAVLLGKTSPPR 305
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG + V +R
Sbjct: 306 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDE----RIP 361
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQH 238
LGDKF+S HGQKG++G + P Q + +G L+ +A P + G ++
Sbjct: 362 ELGDKFASRHGQKGIVGHI--APQQDM-PFTEQGVVPDLIINPHALPSRMTVGHIL---- 414
Query: 239 QSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFICL----VRSLIFT 288
+ ++ G R G F + F+ + + + V + IF
Sbjct: 415 EMIGGKVGALEGRRVDGTAFTGEDEEDLRDSLEDHGFDSSGKEVMYSGITGEKVEAEIFV 474
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L
Sbjct: 475 GTIFYQKLYHMVSNKIHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAALTL 534
Query: 349 HERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
ERL +C V NV QR V YC C D+ + + Y KLL
Sbjct: 535 KERLLDESDQEWINVCGQCGMTAVENVDQRRV---YCPNCGEETDVHEVEMSYAFKLLLD 591
Query: 394 ELSFSMGITLKFDTQ 408
E+ ++GI + + +
Sbjct: 592 EMK-ALGIAPRIELE 605
>gi|149023254|gb|EDL80148.1| RNA polymerase 1-2 [Rattus norvegicus]
Length = 1135
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 183/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + DD L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGDDSLVFGVKPGDPR 802
Query: 120 IQSK---SGDIVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K G IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V + +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCVCV--TVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|386875149|ref|ZP_10117338.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
salaria BD31]
gi|386807028|gb|EIJ66458.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
salaria BD31]
Length = 671
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 131/482 (27%), Positives = 203/482 (42%), Gaps = 111/482 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLF--YPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q F YPQ P
Sbjct: 196 ILGAGASIIPYPEHNQSPRNT--YESA-MAKQSLGFST--PMMNTSTYVRQHFMLYPQVP 250
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA---- 97
+ LG RP ED++V+++AS++ G+ R+ Y+
Sbjct: 251 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFYRIYDAE 310
Query: 98 ------------EVDNKDIQVKSRP--------SDDMLNFGKIQSKSGDIVIGK------ 131
E+ N + ++ +D + + K GDI+IGK
Sbjct: 311 AKQYPGGMRDSFEIPNAEDNIRGYKGERAYRLLEEDGVVASEAPVKGGDILIGKTSPPRF 370
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G++ V+++ +++G + R + +
Sbjct: 371 MEEYREFESSGPYRRDTSIGVRPSEAGVIDTVVMTQSNEGGKMYKIRARD----MRIPEI 426
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFV 242
GDKF+S HGQKGVLG L + A+ L + D L++ P A + + +S
Sbjct: 427 GDKFASRHGQKGVLGILAK--AEDLPYTSEGISPDVLIN---PHAFPSRMTVGMMMESIC 481
Query: 243 SQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDW---IAFICLVRSLIFT 288
+ G R G F+ + H F + E D AF V F
Sbjct: 482 GKAAAFRGKRFDGSAFVGEKMDEVKEVMDAHNFKYSGKEIMYDGRTGKAFPVEV----FI 537
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+GAS L
Sbjct: 538 GVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMIL 597
Query: 349 HERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
+RL +C VA +V QR CR+C + +V Y KLL Q
Sbjct: 598 KDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAFKLLLQ 654
Query: 394 EL 395
E+
Sbjct: 655 EM 656
>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
181]
gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
181]
Length = 1200
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 194/490 (39%), Gaps = 132/490 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF--------- 63
G + Y SP QAIG +N +R+D++L + YPQ+P+
Sbjct: 734 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELVK 793
Query: 64 ----------WILISDCLGRP-EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
+ + G ED+LV+N+ S++ G R + ++ V N ++ S +
Sbjct: 794 YDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN--LKSYSNGTK 851
Query: 113 DMLNFGKI----------------------QSKSGDIVIGKYAE-------IGADHSIKL 143
D LN Q +G++ I K IG+D +
Sbjct: 852 DRLNPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSNLSGIGSDAGRPV 911
Query: 144 KHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
++T + + KV+ S ++ V +RQ+ +GDKFSS HGQKG
Sbjct: 912 QYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQT----RRPEVGDKFSSRHGQKG 967
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFA 227
V+G + T ++LE GK G G Y T F
Sbjct: 968 VVGIIADQADMPFTDAGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF- 1026
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
GG E+ + G ++ + I F +F P+
Sbjct: 1027 ---GGTPVEEASRILIDHGFSYGGKDYLTSGITGEALPFYVFTGPI-------------- 1069
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1070 ----YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1125
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1126 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMTIPYAAKLLIQEL-MSMNV 1184
Query: 402 T--LKFDTQL 409
T LK D +
Sbjct: 1185 TARLKLDDEF 1194
>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
[Tribolium castaneum]
gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
Length = 1122
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 196/501 (39%), Gaps = 140/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + K + IG+ N R+DTLL L YPQ P+
Sbjct: 656 LLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKN---RMDTLLYSLVYPQAPMV 712
Query: 64 W---ILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 713 KTKSIELTNFDKLPAGQNATIAVMSYSGYDIEDALIINKASIDRGFGRCLVYKNSKCVMK 772
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
VDNK + V KS P+ +
Sbjct: 773 RYANQTFDRIQGPLIDTTTNAPMWKHAVLDMDGIVAPGESVDNKQVLVNKSVPTVSAVPG 832
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+ S D I ++ E + KVL+S+N++ + +RQ+
Sbjct: 833 SQTTSVEY-----------KDTPICYRNNEPSYIEKVLVSTNEEDTTIIKILLRQT---- 877
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV+G + EQ T +L+E
Sbjct: 878 RRPEIGDKFSSRHGQKGVVGLVVEQEDMPFNEYGICPDIIMNPHGYPSRMTVGKLIELLA 937
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F S + E+ G + K +F +
Sbjct: 938 GKAGLVEGKFHYGTAFGGSKVNDVCEE-------------LAKHGFNYQGKDFFYSGITG 984
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 985 EPLE---------AYIYSGPVYYQKLKHMVQDKIHARGRGPRAVLTRQPTEGRSRDGGLR 1035
Query: 331 FGEMKCDCLIAHGASGNLHERL-----KCK-NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI +GAS L ERL +C+ +V N+ R+ +C C S+ ++ +
Sbjct: 1036 LGEMERDCLIGYGASMMLIERLMVSSDQCEVDVCNLCGRLGYCGWCNSCKSSREVSSITM 1095
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL EL +M IT +
Sbjct: 1096 PYACKLLLTELQ-AMNITARL 1115
>gi|162605726|ref|XP_001713378.1| second-largest subunit of RNA polymerase III [Guillardia theta]
gi|13794310|gb|AAK39687.1|AF083031_44 second-largest subunit of RNA polymerase III [Guillardia theta]
Length = 1049
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 190/438 (43%), Gaps = 61/438 (13%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+S +IP + + K S +GF N N R+D L L YPQ+P+
Sbjct: 635 ILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGF---NQNSRIDITLSLLIYPQKPIL 691
Query: 64 WILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
I + +G ED++++N++S+E G F++ A +
Sbjct: 692 KTKILNLIGAGKCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFKT----AFLRKTK 747
Query: 104 IQVKSRPSDDMLNFGKIQSKSGDIV--IGKYAEIGADHSIKLKHTERGLVLKVLLSSNDD 161
I++ S L F K+ + ++ + K + LK+++ +V+K L
Sbjct: 748 IEISSFRHLTQL-FSKVNHNNKEVFEFLNKSNNNNQKITSNLKYSDNLVVVKYGLDLT-- 804
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC-DGLM 220
A IR+ N +GDKFSS HGQKG+ GF++ P Q + + KG C D +M
Sbjct: 805 ---LAKFLIRECRN----PEIGDKFSSRHGQKGICGFIK--PQQDMPFS-EKGICPDIIM 854
Query: 221 S-YATPFATSTGGVITEQHQSFVSQLLNCIGAR--------NSGITFIFKHYFLFCLFEC 271
+ + P + G I + CI + I I K F
Sbjct: 855 NPHGFPSRMTIGKTI-----EIILSKSGCISGKFKDGSIFKKININTIVKSLRSFGFVSN 909
Query: 272 PMDWIAFIC---LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
D++ L+ + I++ I FYQ+ HM +DK+ R TG LT +PV R + GG
Sbjct: 910 GEDFMYNGITGNLINNQIYSGIVFYQRLKHMVKDKIHSRATGIKSKLTYQPVEGRSKGGG 969
Query: 329 IEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGA 388
+ FGEM+ DCLI+ GAS +RL + + NS +++ +PY
Sbjct: 970 LRFGEMERDCLISFGASELALDRLLLNSDCYEAKFDKNSGIIHTSNSNTNVVAVKIPYAC 1029
Query: 389 KLLSQELSFSMGITLKFD 406
KLL QEL SM I + +
Sbjct: 1030 KLLLQELQ-SMNIIARLN 1046
>gi|116199389|ref|XP_001225506.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
gi|88179129|gb|EAQ86597.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
Length = 1155
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 129/491 (26%), Positives = 201/491 (40%), Gaps = 107/491 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 ILGAVAGLIPFPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS + C VFR Y AE
Sbjct: 740 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YTAE 797
Query: 99 VDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD------------HSIKLKHT 146
+ + P+ G IQ I K+A + D ++ +K T
Sbjct: 798 L-------QQYPNGRKDRLGGIQKDEAGNTIAKHACLDKDGLAVVGYRVHSGETMIMKET 850
Query: 147 -----------ERG-----------------LVLKVLLSSNDDGKNFAVVSIRQSVNMVH 178
+RG + KV++S+ + + V RQ+
Sbjct: 851 PIDQTSTGIGSDRGSDDFRPAATNYRIADPAYIDKVMISNTEKNTSIVKVQTRQT----R 906
Query: 179 SACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQ 237
LGDKFSS HGQKGV+G + +Q ++ L D +M+ P + + +
Sbjct: 907 RPELGDKFSSRHGQKGVVGIIADQEDMPFSDSGL---VPDIIMN---PHGFPSRMTVGKL 960
Query: 238 HQSFVSQLLNCIGARNSGITFIFKHYFLF----CLFECPMDWIA---FICLV-----RSL 285
+ + G R+ G F+ + + L E W F + +
Sbjct: 961 FECLTGKASVVAGERDYGFGDAFRSHPVEEMGKVLVEHGFSWEGKDYFTSGITGEPHEAY 1020
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
+F +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS
Sbjct: 1021 LFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGAS 1080
Query: 346 GNLHERLKCKNVANVIQ--RVVG----GPYCRICNSADDIIKANVPYGAKLLSQEL-SFS 398
L ERL + + + G +C+ C S + + +PY AKLL QEL S +
Sbjct: 1081 QLLLERLMISSDGTQVDICELCGLLGYKGFCQTCGSTSQVTQMTMPYAAKLLVQELISMN 1140
Query: 399 MGITLKFDTQL 409
+G+ ++ + +
Sbjct: 1141 VGVRMQLEDKF 1151
>gi|168006293|ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693163|gb|EDQ79517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1135
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 199/505 (39%), Gaps = 129/505 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + YQ QA+G N R+DTLL L YPQRPL
Sbjct: 652 ILGVCAGLIPYPHHNQSPRNT--YQCAM-GKQAMGNIAYNQLQRMDTLLYLLVYPQRPLL 708
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYKAEV---- 99
+ +G ED++VMN++SL+ G R K V
Sbjct: 709 STKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMK 768
Query: 100 --DNKD----------------IQVKSRPS----DDMLNFGKIQSKSGDIVIGKYAEIGA 137
N+ +QV +R D + G++ + GDI + K + I
Sbjct: 769 KYANRTADRIMAPELQSSAKGGVQVVARQQLQDHDGIAAVGEM-IRPGDIYVNKQSPIDT 827
Query: 138 DHSIK---------LKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
+++ K T E +V KVLL+SND+ IRQ+
Sbjct: 828 RNNVNNPMALPDSAYKRTPQTYKGAAGETAVVDKVLLTSNDENHFVVKCLIRQT----RR 883
Query: 180 ACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK 213
+GDKFSS HGQKGV G + Q T +++E GK
Sbjct: 884 PEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 943
Query: 214 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
G +G Y + F +G S +S L G SG FI+ + P
Sbjct: 944 AGLHNGKFHYGSAFGEPSGHA---DKVSTISATLVKHGFSYSGKDFIYS-----GITGSP 995
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ ++ IF +YQ+ HM DK+ R G LT +P R R GG+ G
Sbjct: 996 L---------QAYIFMGPIYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSREGGLRLG 1046
Query: 333 EMKCDCLIAHGASGNLHERLKCKNVANVIQRVVG----GPY--------CRICNSADDII 380
EM+ DCLIA+GAS + ERL + IQ G Y C C S D+I
Sbjct: 1047 EMERDCLIAYGASMMILERLMISSDQFQIQVCTKCGMIGYYHHKLKICLCSTCKSGDNIA 1106
Query: 381 KANVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1107 TMKLPYACKLLFQELQ-SMNIVPRL 1130
>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1225
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 123/488 (25%), Positives = 195/488 (39%), Gaps = 132/488 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPL-----FWILI 67
G + Y SP QAIGF N +R+DTLL + YPQ+PL ++
Sbjct: 751 GLIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVYPQKPLCKTRTIELVK 810
Query: 68 SDCLGRP---------------EDSLVMNQASLE-----CGVFRS-------------ES 94
D L ED+LV+N+AS++ C V R ++
Sbjct: 811 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKYPVSLKLYANGTKDT 870
Query: 95 YKAEVDNKDIQVKSRPSDDMLNFGKIQSK--SGDIVIGKYAEIGADHS------------ 140
+ + VK+ D + +K G++ + KY A+ S
Sbjct: 871 VEGPTMENGVPVKAHALLDEDGIASVGAKVSQGEVYVNKYVPENANSSGLSDTASNSLGT 930
Query: 141 ------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
K + + + KV++S + G + RQ+ +GDKFSS HGQKG
Sbjct: 931 SLMPQAQKYRLPDPSYIDKVMVSEVESGNQLIKIQTRQT----RVPEVGDKFSSRHGQKG 986
Query: 195 VLGFLEQ-----------TP---------------AQLLEAALGK-GACDGLMSYATPFA 227
V+G + + TP ++LE GK G G Y T F
Sbjct: 987 VVGIIAEQVDMPFSDRGITPDIIMNPHGFPSRMTVGKMLELVAGKAGILKGKFEYGTAFG 1046
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + + ++ + +G ++ K Y + P+ + +F
Sbjct: 1047 ---GSKLADLSKALIE----------AGYSYDGKDYLTSGITGEPLP---------AYVF 1084
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS
Sbjct: 1085 MGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQL 1144
Query: 348 LHERLKC---KNVANVIQR---VVGGPYCRICNSA----DDIIKANVPYGAKLLSQELSF 397
L ERL K+ +V + + G +C+ C +A ++++ +PY KLL EL
Sbjct: 1145 LRERLMLSSDKHEVDVCESCGFMAFGRWCQRCATAGESGSNVVRMTLPYAFKLLLNELG- 1203
Query: 398 SMGITLKF 405
SM + +
Sbjct: 1204 SMNVNTRL 1211
>gi|4867856|emb|CAB43079.1| RNA polymerase II [Peltanthera floribunda]
Length = 260
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHS L+H+E G V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSETGTVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L S+IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFETMYNGHTGRRLT--------------SMIFLGP 173
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 351 RL 352
RL
Sbjct: 234 RL 235
>gi|13929088|ref|NP_113961.1| DNA-directed RNA polymerase I subunit RPA2 [Rattus norvegicus]
gi|3914801|sp|O54888.1|RPA2_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=A127; AltName:
Full=RPA135
gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa subunit [Rattus norvegicus]
Length = 1135
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 183/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + DD L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGDDSLVFGVKPGDPR 802
Query: 120 IQSK---SGDIVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K G IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V + +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCVCV--TVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|302806970|ref|XP_002985216.1| hypothetical protein SELMODRAFT_424388 [Selaginella moellendorffii]
gi|300147044|gb|EFJ13710.1| hypothetical protein SELMODRAFT_424388 [Selaginella moellendorffii]
Length = 950
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 124/241 (51%), Gaps = 54/241 (22%)
Query: 4 LLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
LLG+S IP +H Q+ V +Q+QKH QAIGF T + R+DT ++QL+YPQ+P
Sbjct: 553 LLGVSASAIPFLNHNQS----ARVTHQAQKHGKQAIGFYTCDILSRMDTNVRQLYYPQQP 608
Query: 62 LFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSESY---KAE 98
L ++ L RP EDSL++NQ+SL+ G+FRS + +A
Sbjct: 609 LVCTRLAQLLARPELANGVNCVVAVACYGGYNQEDSLILNQSSLDRGLFRSTHFRVHRAT 668
Query: 99 VD---------NKDIQVKSRPSD-------DMLNFGKIQSKSGDIVIGKYAEIGA----D 138
+D + +V SD D L F + K+ D+VIGK A D
Sbjct: 669 LDYSSSDIRFCRPETEVARSNSDGIDKLDSDGLPFIGAEMKAADVVIGKAGRRQASKLVD 728
Query: 139 HSIKLKHTERGLVLKVLLSSND-DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
HS KL+ E+G V +V+ S D +G+ V +R++ +GDKFSSMHGQKGV+G
Sbjct: 729 HSSKLRKLEQGWVDQVVCSGGDEEGERHVRVRLREA----RCPQVGDKFSSMHGQKGVVG 784
Query: 198 F 198
Sbjct: 785 M 785
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 298 HMSEDKVKFRN-TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---- 352
H+SEDK+K+R +G PLT +PV DRKR GG +FGEM+ DCLI+HGAS + ERL
Sbjct: 827 HLSEDKMKWRGASGPVHPLTHQPVKDRKREGGTKFGEMERDCLISHGASATVKERLFFVS 886
Query: 353 ------KCKNVANV-IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C N + I P C CN I ++P+ KLLS EL SMG+ ++F
Sbjct: 887 DRSLVPVCTNCHRLAILNCKQHPRCLFCNPQQRIATLDMPHACKLLSMELR-SMGVDMRF 945
>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
Length = 1089
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 202/485 (41%), Gaps = 111/485 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+DTL+ + YPQ P+
Sbjct: 634 LLGVCAGLVPYPHHNQSPRN--TYQC-AMGKQAMGIIGYNQKNRIDTLMYNIVYPQSPMV 690
Query: 64 W---ILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 691 RSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIK 750
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK------------------SGDIVIGKYAEIGADH 139
N+ P D + GKI +K +V + + +++
Sbjct: 751 RYSNQTFDRIMGPMKDGVT-GKIIAKHECLDTDGIVSPGERLTCKQTMVNKEMPAVKSNN 809
Query: 140 SIKLKHTERGLVL---KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
I+ K + + + +VL+S+N++ + + +RQ+ +GDKFSS HGQKGV
Sbjct: 810 PIEQKESGQQPIAYSARVLVSTNNEEEFLVKILLRQT----RRPEIGDKFSSRHGQKGVT 865
Query: 197 GFL-EQ----------TPAQLLEA-------ALGK---------GACDGLMSYATPFATS 229
G + EQ +P ++ +GK G +G Y T F S
Sbjct: 866 GLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGS 925
Query: 230 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 289
+ Q + F N G ++ K F + P++ I++
Sbjct: 926 KCSDL--QDELF-----------NHGFNYLGKDVFYSGITGEPLEV---------YIYSG 963
Query: 290 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 349
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS +
Sbjct: 964 PVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIM 1023
Query: 350 ERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 403
ERL +V NV R+ +C C S+ + ++PY KLL QEL+ SM I
Sbjct: 1024 ERLMISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVSTISMPYACKLLFQELT-SMNIVP 1082
Query: 404 KFDTQ 408
+ Q
Sbjct: 1083 RLKLQ 1087
>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1272
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 200/493 (40%), Gaps = 122/493 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL + YP P+
Sbjct: 804 LLGAVAGLIPYPHHNQSPRN--TYQCAM-GKQAIGVIAYNQLHRIDTLLYLMVYPHHPMV 860
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES---- 94
+ +G ED+L++N+ASL+ C VFR +
Sbjct: 861 RTKTIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIK 920
Query: 95 ------YKAEVD---NKDIQV--KSRPSDD--MLNFGKIQSKSGDIVIGKYAEIGA-DHS 140
Y D + + QV K +P DD + + G ++ +G++ I K + A D+S
Sbjct: 921 RYPNGTYDRIADPPRDPEGQVLEKWKPCDDGGVADVG-MKVYNGNVYINKQSPSNANDNS 979
Query: 141 I-----------KLKHTERGLVL----KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+ T RG V KV+++ + + V +RQ+ LGDK
Sbjct: 980 VGAGAATVTSWANTPMTYRGTVPSYIDKVMVTDTESDQTLVKVLLRQT----RRPELGDK 1035
Query: 186 FSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDG 218
FSS HGQKGV G + Q T ++LE GK G G
Sbjct: 1036 FSSRHGQKGVCGLIVQQEDMPFNDRGTCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLRG 1095
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
+ Y T F G E + + G +++ K Y + P++ F
Sbjct: 1096 TVEYGTAFG---GSKAVEMSKILIEH----------GYSYLGKDYLTSGITGQPLEHYVF 1142
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ + +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC
Sbjct: 1143 MGPI---------YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1193
Query: 339 LIAHGASGNLHERLKCKNVA---NVIQR---VVGGPYCRICNSADDIIKANVPYGAKLLS 392
LIAHGAS L ERL + + +V Q + +C C + + + K +PY KLL
Sbjct: 1194 LIAHGASQLLLERLMLSSDSFELDVCQDCGFMGYNGWCVRCKNGNSVTKITIPYACKLLF 1253
Query: 393 QELSFSMGITLKF 405
QEL +M I +
Sbjct: 1254 QEL-MAMNIAPRL 1265
>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus SCM1]
gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
Length = 1115
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 204/480 (42%), Gaps = 107/480 (22%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLF--YPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q F YPQ P
Sbjct: 640 ILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHFMLYPQVP 694
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
+ LG RP ED++V+++AS++ G+ R+ Y AE
Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAE 754
Query: 99 -------------VDNKDIQVKSRP--------SDDMLNFGKIQSKSGDIVIGK------ 131
+ N + ++ +D + + K GDI+IGK
Sbjct: 755 AKQYPGGMRDAFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSPPRF 814
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G+V V+++ +++G + R + +
Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARD----MRIPEI 870
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGVLG L + A+ L + D L++ +A P + G ++ +S
Sbjct: 871 GDKFASRHGQKGVLGILAK--AEDLPYTASGMSPDVLINPHAFPSRMTVGMMM----ESI 924
Query: 242 VSQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+ G R G F+ + H F + E D +F +
Sbjct: 925 CGKSAALRGKRFDGSAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVE-VFIGV 983
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
+YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+GAS L +
Sbjct: 984 VYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKD 1043
Query: 351 RL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 395
RL +C VA +V QR CR+C + +V Y KLL QE+
Sbjct: 1044 RLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAFKLLLQEM 1100
>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Aureobasidium pullulans]
Length = 937
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 172/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 553 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 609
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + D L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 610 LARTMAMDYLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYQDQ 669
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ RP+ +D + ++ DI++GK A + D
Sbjct: 670 EKSVGHSVVEQFERPTRADTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDA 729
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++ DG FA V +R + +GD
Sbjct: 730 EELGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTSDGHRFAKVRVRTT----KVPQIGD 785
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 786 KFASRHGQKGTIGITYRHEDMPFTRGGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLR 845
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ VS LL +G ++ G ++ + L
Sbjct: 846 GDEGDATPFTKVT---VTQ-----VSDLLRKMGYQSRGFEVMYNGHTGRKLV-------- 889
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 890 ------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937
>gi|432103058|gb|ELK30392.1| DNA-directed RNA polymerase I subunit RPA2 [Myotis davidii]
Length = 1137
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 188/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 688 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVA 746
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------- 118
ED++++N+AS E G YK+E D+ K + DD L FG
Sbjct: 747 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPR 804
Query: 119 KIQS--KSGDIVIGKYAEIG-----------ADHSIKL-KHTERGLVLKVLLSSNDDGK- 163
+Q + G IG + G + S+ K E +V + + SND G
Sbjct: 805 TVQKLDEDGLPFIGAQLQYGDPYYSYVNLNTGESSVMFYKSKENCIVDNIKVCSNDSGSG 864
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KFKCVCI--TMRIPRNPTIGDKFASRHGQKGILSRLWPTEDMPFTESGMVPDILFNPHGF 922
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 PSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGT 978
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
++ I+ + L + IF + +YQ+ HM DK + R TG+ +T
Sbjct: 979 ERLYSG-------------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1024
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1025 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1084
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1085 KPPPSWSAMRNRKYNCTVCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1136
>gi|444710488|gb|ELW51468.1| DNA-directed RNA polymerase I subunit RPA2 [Tupaia chinensis]
Length = 1135
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 185/472 (39%), Gaps = 115/472 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCL---GRP-------- 74
+YQ Q Q +GFP R D L +L PQ PL + D P
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYEMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------- 118
ED++++N+AS E G YK+E D+ K + DD L FG
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPR 802
Query: 119 KIQSKSGDIV--IGKYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGK- 163
+Q D + IG + G + L K E +V + + SND G
Sbjct: 803 TLQKLDDDGLPFIGTKLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCALCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|83415463|gb|ABC17939.1| RNA polymerase II second largest subunit, partial [Cladochytrium
replicatum]
Length = 725
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 173/398 (43%), Gaps = 82/398 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R DT++ LFYPQ+P
Sbjct: 342 AMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGTFLTNYLLRYDTMMNILFYPQKP 398
Query: 62 L----------FWILISD---CLG-------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L F L + C+ EDS++MN +S++ G+FRS Y+ +D
Sbjct: 399 LGTTRSMEYLRFRELPAGQNACVAIACYSGYNQEDSIIMNXSSIDRGLFRSMYYRVYMDQ 458
Query: 102 KD----IQVKS--RPS----------------DDMLNFGKIQSKSGDIVIGK-------- 131
+ +Q ++ +P+ DD L ++ DI+IGK
Sbjct: 459 EKKVGMLQTETFEKPTRETTLRLRHGTYEKLEDDGLIAPGMRVSGDDIIIGKTVPLQTES 518
Query: 132 ------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
A+ D S LK TE+G+V VL+++N DG F V +R V +GDK
Sbjct: 519 DELGQRQAQTKRDASTPLKSTEQGIVDSVLVTTNSDGYKFIKVRVRS----VRIPQMGDK 574
Query: 186 FSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVS 243
F+S HGQKG +G + A +G L+ +A P + G ++ + +S
Sbjct: 575 FASRHGQKGTVGMTYRQEDMPFTA---EGISPDLIVNPHAIPSRMTIGHLV----ECLLS 627
Query: 244 QLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFY 293
++ G F + H L+E F L +R+ +F T+Y
Sbjct: 628 KVATLTGREGDATPFTDLTVHQVSDLLYEHGHQQRGFEVLYNGHTGKKLRAQLFMGPTYY 687
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
Q+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 688 QRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 725
>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
symbiosum A]
gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
symbiosum A]
Length = 1115
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 203/487 (41%), Gaps = 117/487 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLF--YPQ 59
S +LG IIP + + Y+S + Q++GF T P + T ++Q F YPQ
Sbjct: 638 SAILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHFMLYPQ 692
Query: 60 RPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKAEV 99
P+ LG RP ED++V++++S++ G+ R+ Y+
Sbjct: 693 TPIVNTRAMGLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKSSVDRGLARTFFYRI-- 750
Query: 100 DNKDIQVKSRPSDDMLNF------------------------GKIQSKS----GDIVIGK 131
D + K P NF G I S+S GDI+IGK
Sbjct: 751 --YDAEAKQYPGGMRDNFEIPGAEDNIRGYKGEKSYRLLEDDGVIASESTVLGGDILIGK 808
Query: 132 ---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 176
Y E D SI ++ +E G+V V+++ +++G + +R
Sbjct: 809 TSPPRFMEEYKEFEPSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRD---- 864
Query: 177 VHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITE 236
+ +GDKF++ HGQKGVLG L + L A G + +A P + G +
Sbjct: 865 MRVPEIGDKFAARHGQKGVLGILAKN-EDLPYTAEGVTPDVLINPHAFPSRMTVGMFM-- 921
Query: 237 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL----------- 285
+S + G + G F+ + + + E MD F + +
Sbjct: 922 --ESITGKAAALRGTQFDGSAFVGEK--MEEVREV-MDTAGFKYSGKEIMYDGRTGKAFP 976
Query: 286 --IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 343
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+G
Sbjct: 977 VEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYG 1036
Query: 344 ASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGA 388
AS L +RL +C VA +V QR CR+C + +V Y
Sbjct: 1037 ASMILKDRLLDESDKSDIYVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAF 1093
Query: 389 KLLSQEL 395
KLL QE+
Sbjct: 1094 KLLLQEM 1100
>gi|56694368|gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
Length = 565
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 162/406 (39%), Gaps = 115/406 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 191 SLILGVCASIIPFPDHNQSPRN----TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQ 245
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYK 96
+PL + L EDS++MNQ+S++ G FRS SY+
Sbjct: 246 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 305
Query: 97 AEVDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
E VK RP+ DD L + D++IGK I
Sbjct: 306 DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQ 365
Query: 138 D-------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D HS L+H+E G+V +VLL++N DG F V +R V +GD
Sbjct: 366 DESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRVPQIGD 421
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD- 217
KFSS HGQKG +G E P QL+E +GK A
Sbjct: 422 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 481
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +S+ L+ G + G ++ + L
Sbjct: 482 GKEGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRKL--------- 524
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 525 -----SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 565
>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
Af293]
gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
fumigatus Af293]
gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
fumigatus A1163]
Length = 1200
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 127/491 (25%), Positives = 196/491 (39%), Gaps = 134/491 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF--------- 63
G + Y SP QAIG +N +R+D++L + YPQ+P+
Sbjct: 734 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELVK 793
Query: 64 ----------WILISDCLGRP-EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
+ + G ED+LV+N+ S++ G R + ++ V N ++ S +
Sbjct: 794 YDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN--LKSYSNGTK 851
Query: 113 DMLN-----------------------FGKIQSKSGDIVIGKYAE-------IGADHSIK 142
D LN G+ Q +G++ I K IG+D
Sbjct: 852 DRLNPPTYENGAPIRKHALLEADGLAAVGE-QVNAGEVYINKSTPEQSNLSGIGSDAGRP 910
Query: 143 LKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
+++T + + KV+ S ++ V +RQ+ +GDKFSS HGQK
Sbjct: 911 VQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQT----RRPEVGDKFSSRHGQK 966
Query: 194 GVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPF 226
GV+G + T ++LE GK G G Y T F
Sbjct: 967 GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF 1026
Query: 227 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 286
GG E+ + G ++ + I F +F P+
Sbjct: 1027 ----GGTPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPI------------- 1069
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1070 -----YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1124
Query: 347 NLHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMG 400
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM
Sbjct: 1125 LLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMTIPYAAKLLIQEL-MSMN 1183
Query: 401 IT--LKFDTQL 409
+T LK D +
Sbjct: 1184 VTARLKLDDEF 1194
>gi|56694370|gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
Length = 565
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 161/404 (39%), Gaps = 111/404 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 191 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 247
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 248 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 307
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 308 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE 367
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 368 SQGQASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRVPQIGDKF 423
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 424 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 483
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 484 EGDATPFTDVTVDSI--------SRALHKCGYQMRGFETMYNGHTGRRLT---------- 525
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 526 ----AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 565
>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
42464]
gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
42464]
Length = 1155
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 130/484 (26%), Positives = 205/484 (42%), Gaps = 93/484 (19%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLE-----CGVFRSESYKAE 98
+++S ED+LV+N+AS + C VFR Y AE
Sbjct: 740 ITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRK--YTAE 797
Query: 99 VDNKDIQVKSRP------------------SDDMLNFGKIQSKSGDIVIGKYAEI----- 135
+ K R D L + SG+ +I K I
Sbjct: 798 LQQYPNGRKDRLGGIQKDEEGRTIAKHACLDKDGLAVVGYRVHSGETMIMKETPIDQTST 857
Query: 136 ------GADH----SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
G+D I + + + KV++S+ + KN A++ ++ LGDK
Sbjct: 858 GIGSDRGSDEFRPAPINYRIPDPAYIDKVMVSNTE--KNTAIIKVQ--TRQTRRPELGDK 913
Query: 186 FSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQ 244
FSS HGQKGV+G + +Q ++ L D +M+ P + + + + +
Sbjct: 914 FSSRHGQKGVVGIIVDQEDMPFSDSGL---VPDIIMN---PHGFPSRMTVGKLFECLTGK 967
Query: 245 LLNCIGARNSGITFIFKHYFL----FCLFECPMDWIA---FICLV-----RSLIFTWITF 292
G R+ G F+ + + L E W F + + +F +
Sbjct: 968 ASVVAGRRDYGFGDAFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIY 1027
Query: 293 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1028 YQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERL 1087
Query: 353 KCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKF 405
+ ++ +R ++G +C+ C S + + +PY AKLL QEL S ++G+ ++
Sbjct: 1088 MISSDGTQVDICERCGLLGYKGFCQTCGSTSQVTQMTMPYAAKLLVQELISMNVGVRMQL 1147
Query: 406 DTQL 409
+ +
Sbjct: 1148 EDKF 1151
>gi|242070157|ref|XP_002450355.1| hypothetical protein SORBIDRAFT_05g004155 [Sorghum bicolor]
gi|241936198|gb|EES09343.1| hypothetical protein SORBIDRAFT_05g004155 [Sorghum bicolor]
Length = 152
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 88/155 (56%), Gaps = 38/155 (24%)
Query: 86 ECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH 145
+ G ++ES + VDN D DD L + ++ DI+IGK +E G DH IKLKH
Sbjct: 6 KIGFGKTESKRGRVDNLD--------DDGLPYIGANLQTEDIIIGKVSESGEDHIIKLKH 57
Query: 146 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE----- 200
TE+G+ VLLS+N++G+NF VV+ RQ V + CL DKFSSMHGQKG +GFLE
Sbjct: 58 TEKGMDQNVLLSANNEGRNFVVVTFRQ----VWTPCLRDKFSSMHGQKGGVGFLESQENF 113
Query: 201 ---------------------QTPAQLLEAALGKG 214
QTP QLLEAALGKG
Sbjct: 114 PFTHEGIVPDLVINSHAFPTRQTPRQLLEAALGKG 148
>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
Length = 936
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 172/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN N+R+DT+ L+YPQ
Sbjct: 552 AMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGITLTNYNVRMDTMANVLYYPQ 606
Query: 60 RPL------------------FWILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL I+ C EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 607 KPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYM 666
Query: 100 DNKD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYA---- 133
D + ++ +P+ DD + + DI+IGK A
Sbjct: 667 DQEKRVGMSVVEQFEKPTRGDTMRMKHGTYDKLDDDGIIAPGTRVSGEDIIIGKTAPMAP 726
Query: 134 -----------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
I D S L+ TE GL+ +VLL++N +G F V R + +
Sbjct: 727 DAEELGQRTKFHIKRDVSTPLRSTESGLIDQVLLTTNVEGLKFVKVRTRTT----KIPQI 782
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K G+
Sbjct: 783 GDKFASRHGQKGTIGITYRQEDMPFTADGLVPDIIINPHAIPSRMTIAHLIECLLSKVGS 842
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T +T+ +S LL G + G ++ + +
Sbjct: 843 LRGQEGDATPFTDVT---VTQ-----ISDLLRQHGFQQRGFEVMYNGHTGRKM------- 887
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 888 -------NAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936
>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cryphonectria parasitica]
Length = 941
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 175/416 (42%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ LLG+ IIP H Q+ YQS QA+GF TN + R+DT+ L+YPQ
Sbjct: 557 AMLLGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQ 611
Query: 60 RPLFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS------- 92
+PL I+ C EDS++MNQ+S++ G+FRS
Sbjct: 612 KPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYT 671
Query: 93 -----------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGA 137
ES++ + +++K + DD + ++ DI+IGK + I A
Sbjct: 672 DSEKRVGINVVESFEKPFRSDTLRLKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTSPINA 731
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D+ S L+ TE G++ V++++N DG + V +R + +
Sbjct: 732 DNQELGQRTEQHVKRDASTPLRSTESGIIDSVIVTTNQDGLRYVKVRVRTT----KIPQI 787
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G E P A L+E + K A
Sbjct: 788 GDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLMSKLAT 847
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G+ ATPF TE +S+LL G ++ G ++ + L
Sbjct: 848 LKGMEGDATPF--------TEVTVDSISELLRQHGYQSRGFEVMYNGHTGRKL------- 892
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ F
Sbjct: 893 -------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 941
>gi|351518439|gb|AEQ39960.1| RNA polymerase II second largest subunit [Lecophagus sp. ATCC
56071]
Length = 731
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 171/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN N R+DT+ L+YPQ+P
Sbjct: 347 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFNERMDTMANILYYPQKP 403
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 404 LATTRSMEFLKFRELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYMNF 463
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYA------ 133
E+++ + +++K + DD L ++ GDI+IGK A
Sbjct: 464 ETRIGMQVVEAFEKPTRSNTLRLKHGTYDKLDDDGLIAPGVRVSGGDIIIGKTAPMPQDS 523
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V +VLL++N +G F V +R + +GD
Sbjct: 524 EELGQRTKFHTRRDVSTPLRSTENGIVDQVLLTTNAEGVKFVKVRMRTT----KVPQIGD 579
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 580 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 639
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE VS+LL G ++ G ++ + L
Sbjct: 640 GFEGDATPF--------TEVTVENVSKLLREHGYQSRGFEVMYNGHTGRKLI-------- 683
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 684 ------IQVFLGPTYYQRLRHMVDDKIHARARGPIQILTRQPVEGRARDGGLRF 731
>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1205
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 192/492 (39%), Gaps = 120/492 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N +R+D+LL + YPQ+P+
Sbjct: 732 ILGAVAGLIPYPHHNQSPRNT--YQCAM-GKQAIGAIANNQFLRIDSLLYTMVYPQKPMV 788
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRS-----E 93
+ + ED+LV+N+ S++ C VFR +
Sbjct: 789 KTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYSTNLK 848
Query: 94 SYKAEVDNK--------DIQVKSRPSDDMLNFGKIQSK--SGDIVIGKYAE--------I 135
SY +K + V+ D + K G++ I K
Sbjct: 849 SYSNGTKDKLKGPDRENGLPVRKHALLDNDGLAAVGEKVNQGEVYINKVTPENALSSGIT 908
Query: 136 GADHSIKL---------KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
G+D + K + + KV++SS + V RQ+ +GDKF
Sbjct: 909 GSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQT----RRPEVGDKF 964
Query: 187 SSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGL 219
SS HGQKGV+G + + T ++LE GK G G
Sbjct: 965 SSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELVAGKAGILSGQ 1024
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
SY T F GG E+ + + KH F + +C I
Sbjct: 1025 FSYGTAF----GGSPVEEMSAI-----------------LVKHGFSYGGKDCLTSGITGE 1063
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
L + +F +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCL
Sbjct: 1064 SLP-AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCL 1122
Query: 340 IAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
IA+G S L ERL +V + +C+ C S+ ++K +PY AKLL Q
Sbjct: 1123 IAYGTSQLLLERLMISSDQYEVDVCESCGFMGYSGWCQRCKSSRGVVKMIIPYAAKLLVQ 1182
Query: 394 ELSFSMGITLKF 405
EL FSM + +
Sbjct: 1183 EL-FSMNVVARL 1193
>gi|4867854|emb|CAB43082.1| RNA polymerase II [Retzia capensis]
Length = 256
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHS L+H+E G+V +VLL++N DG F V +R V GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQXGDKFSSRHGQKGTVG 75
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT 135
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L ++IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFETMYNGHTGRRLT--------------AMIFLGP 173
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 351 RL 352
RL
Sbjct: 234 RL 235
>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 896
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 171/405 (42%), Gaps = 112/405 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 520 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGLYLTNFQLRMDTLANILYYPQKP 576
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + I+ G EDS++MNQ+S++ G+FRS Y+A +D
Sbjct: 577 LVATRSMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQ 636
Query: 102 K------DIQVKSRPSDDML------NFGKIQSKS----------GDIVIGKYA------ 133
+ D++ +P+ + ++ KI+ DI+IGK A
Sbjct: 637 EKKSGFSDVETFEKPARETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDT 696
Query: 134 -EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
E+GA D S LK TE+G+V V+L++N+DG F V +R + +GDK
Sbjct: 697 SEMGARTTQTKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRST----RVPQMGDK 752
Query: 186 FSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDG 218
F+S HGQKG +G E P L+E L K G+ G
Sbjct: 753 FASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTG 812
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF T Q +L +C G + G ++ + L
Sbjct: 813 TEGDATPFTDITV-------QEIADRLRSC-GYQQRGFEIMYNGHTGKKLA--------- 855
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
+ +F T+YQ+ HM +DK+ R G Q LT +PV R
Sbjct: 856 -----AQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGR 895
>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
Length = 937
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 170/416 (40%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN +R++T++ L+YPQ
Sbjct: 553 SMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQ 607
Query: 60 RPLFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL I+ C EDS++MNQ+S++ G+FRS Y+A
Sbjct: 608 KPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYT 667
Query: 100 D-NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
+ K I V +P+ DD + ++ DI+IGK A I
Sbjct: 668 EQEKRIGVNVLEQFEKPTRQDTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPG 727
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S L+ TE G+V +VL ++N +G F V R + +
Sbjct: 728 DAQELGQKTQNHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQI 783
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P A L+E L K G+
Sbjct: 784 GDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGS 843
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T VS+LL G + G ++ + L
Sbjct: 844 LKGAEGDATPFTDVT--------VESVSKLLVEHGYQQRGFEVMYNGHTGKKL------- 888
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 889 -------RAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 937
>gi|440296696|gb|ELP89482.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
invadens IP1]
Length = 1100
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 122/454 (26%), Positives = 195/454 (42%), Gaps = 91/454 (20%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG------------- 72
+YQ Q + Q +GFP R D+ L L YPQR L + + G
Sbjct: 664 MYQCQM-AKQTMGFPMMAYKYRSDSKLLLLHYPQRSLCQCTLMEPFGFNELPTGTNAVVA 722
Query: 73 -------RPEDSLVMNQASLECGVFRSESYKA---EVDNKDIQV------KSRPSDDMLN 116
ED+L++ + S+E G YKA ++ + Q+ K D+ L+
Sbjct: 723 VISYTGYDMEDALIIKKTSIERGFGHGSQYKAYKIDLTKEQTQMISGLNPKGELYDEHLD 782
Query: 117 FGKIQSKSGDIVIGK--YAEI----GADHSIKLKHTERGLVLKVLLSSNDD---GKNFAV 167
F + + G+I Y+EI G + KL E+G + V + ND G+ AV
Sbjct: 783 FDGL-PRPGEIFENSPIYSEIDKITGVVKTKKLM-GEKGYIESVTIVGNDKKEAGQQQAV 840
Query: 168 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGF-LEQTPAQLLEAALGKGACDGLMS-YATP 225
V +R + + +GDKFSS HGQKG L + E+ + D L++ +A P
Sbjct: 841 VRVRYN----RTPVIGDKFSSRHGQKGTLSVHYAEKDMPFTESGM---TPDILINPHAFP 893
Query: 226 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH------YFLFCLFECPMDWIAFI 279
+ G +I +S S++ G G F F YF L + ++
Sbjct: 894 SRMTIGMLI----ESMASKVGALKGEYQDGTPFKFDEQNRAVEYFGKQLLKYGYNYYGSE 949
Query: 280 CL--------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +++ I+ + +YQ+ +H +DK + R+TG PLT +PV RKR GGI
Sbjct: 950 PMYSGITGTEMQTDIYIGVVYYQRLVHQVKDKYQVRSTGPVNPLTQQPVKGRKRGGGIRL 1009
Query: 332 GEMKCDCLIAHGASGNLHERL-------------KCKNVANV-----IQRVVGGPYCRIC 373
GEM+ D L+ HG + + +R KC ++ ++ + R+V C C
Sbjct: 1010 GEMERDSLLGHGTAALVEDRFLQCSDKSYHYVCKKCGSMVSIYKNTELDRMV----CASC 1065
Query: 374 NSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
I K VPY + L+ EL +M + L+ T
Sbjct: 1066 GQNSAIKKIQVPYVLRYLASELG-AMNVRLRLKT 1098
>gi|4867862|emb|CAB43072.1| RNA polymerase II [Logania vaginalis]
Length = 262
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 351 RL 352
RL
Sbjct: 236 RL 237
>gi|332814147|ref|XP_001144997.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4 [Pan
troglodytes]
Length = 1079
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|4867893|emb|CAB43087.1| RNA polymerase II [Sanango racemosum]
Length = 259
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHS L+H+E G+V +VLL++N DG F V +R V +GD FSS HGQKG +G
Sbjct: 18 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDXFSSRHGQKGTVG 73
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 74 MTYTQEDMPWTVEGISPDIIVNPXAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 133
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L S+IF
Sbjct: 134 --------VDNISKALHKCGYQMRGFETMYNGHTGRRLT--------------SMIFLGP 171
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 172 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 231
Query: 351 RL 352
RL
Sbjct: 232 RL 233
>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
345-15]
gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
345-15]
Length = 1179
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 121/475 (25%), Positives = 186/475 (39%), Gaps = 137/475 (28%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
QA+G N R+D+ L YPQ+P+ + +G RP
Sbjct: 699 QALGLYALNYQYRMDSHAYLLHYPQKPIVQTRSLEEIGYNDRPSGQNFIVAIMPYMGYNM 758
Query: 75 EDSLVMNQASLECGVFRSESYKAEV----------------------DNKDIQVKSRPSD 112
ED+++MN+ S++ G+ R+ ++ D+K Q ++
Sbjct: 759 EDAIIMNKTSVDYGLGRAHFFRVYTVMENTYAGGLKDTITVPSPKLYDHKGDQYYTKLGP 818
Query: 113 DMLNFGKIQSKSGDIVIGKYA-----------EIGA----DHSIKLKHTERGLVLKVLLS 157
D + +++ GD+++G+ + +G D S++L++ E G+V VL++
Sbjct: 819 DGIIEPEVEVDGGDVLVGRESPPRFLGEERVMSLGTLTKRDTSVQLRYGEHGVVDTVLIT 878
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------ 199
D V +R + LGDKF+S HGQKGV+G L
Sbjct: 879 QTTDRNLLVKVKVRD----LRIPELGDKFASRHGQKGVVGMLYPKYDMPYTEDGIVPDII 934
Query: 200 --------EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 250
T Q+LE GK A + TPF ++ V Q
Sbjct: 935 INPHGIPSRMTVGQILELITGKAAAMEARYVDGTPF-----------YKDDVDQYK---- 979
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
+ KH + E D L+ + I + FYQ+ HM DK+ R TG
Sbjct: 980 ------IILIKHGYSPDGTEVMYDGRTG-QLLETPISIGVVFYQRLYHMVADKMHARATG 1032
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNV 357
Q LT +P + R GG+ FGEM+ DCL+ HGA+ L +R+ C +V
Sbjct: 1033 KVQLLTRQPTEGKARQGGLRFGEMERDCLVGHGATMLLRDRMLDGSDAYTMYVCTLCGHV 1092
Query: 358 A------NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
A NV + C I DI VPY KL QE+ SMGI + +
Sbjct: 1093 AWYNSRKNVYE-------CPIHGENGDIKPVKVPYAFKLFLQEI-MSMGIKPRIE 1139
>gi|154152065|ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
gi|151553633|gb|AAI48065.1| POLR1B protein [Bos taurus]
gi|296482453|tpg|DAA24568.1| TPA: DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
Length = 1135
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 180/470 (38%), Gaps = 111/470 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E V D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLVFGVKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ +D L F Q K GD G + K E +V + + SND G F
Sbjct: 805 QKLDNDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGTGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE- 977
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 978 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1025 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1084
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I ++PY + EL+ +M I +K D
Sbjct: 1085 PPSWSALRNRKYICALCNRSDTIDTISLPYVFRYFVAELA-AMNIKVKLD 1133
>gi|40643899|emb|CAD89688.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
Length = 356
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 148/379 (39%), Gaps = 108/379 (28%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QA+G TN +R+DTL L+YPQ+PL + L
Sbjct: 4 QAMGMYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACHSGYNQ 63
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS-------------------RPSD 112
EDSL+MNQ+S++ G FRS SY+ E VK R D
Sbjct: 64 EDSLIMNQSSIDRGFFRSIFFRSYRDEEKKMGTLVKEDFGCPNKEDTMGMRHGSYDRLDD 123
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSN 159
D + D++IG I D HS L+H+E G+V +VLL++N
Sbjct: 124 DGFAPPGTKVSGDDVIIGXTTPIAQDDAQGQASRYTRRDHSTSLRHSEHGIVDQVLLTTN 183
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQ G +G E P
Sbjct: 184 ADGLRFVKVRMRS----VRLPQIGDKFSSRHGQXGTVGMTYNQEDLPWTIEGITPDIIVN 239
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 240 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 291
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G + + + P ++IF T+YQ+ HM +DK+ R G
Sbjct: 292 MRGFETTYNGH---TGRQIP-----------AMIFLGPTYYQRLKHMVDDKIHSRGRGPV 337
Query: 313 QPLTGRPVADRKRFGGIEF 331
Q LT +P R R GG+ F
Sbjct: 338 QILTRQPAEGRSRDGGLRF 356
>gi|397465558|ref|XP_003804558.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Pan
paniscus]
Length = 1079
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|332257258|ref|XP_003277726.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Nomascus leucogenys]
Length = 1079
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|332257262|ref|XP_003277728.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Nomascus leucogenys]
Length = 952
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 503 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 561
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 562 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 621
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 622 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 680
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 681 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 738
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 739 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE 794
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 795 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 840
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 841 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 900
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 901 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|332257256|ref|XP_003277725.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Nomascus leucogenys]
Length = 1135
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|83415487|gb|ABC17951.1| RNA polymerase II second largest subunit, partial [Rhizophlyctis
rosea]
Length = 719
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 170/417 (40%), Gaps = 118/417 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G T+ R+DT+ LFYPQ
Sbjct: 334 SMILGICASIIPFPDHNQSPRNT----YQSA-MGKQAMGVYLTSYQTRMDTMANILFYPQ 388
Query: 60 RPLFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL I+ C EDSL+MNQ+S++ G+FRS Y+ +
Sbjct: 389 KPLATTRSMKYLKFKELPAGQNAIVAIGCYSGYNQEDSLIMNQSSIDRGLFRSMYYRVYL 448
Query: 100 DNK------DIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKY---- 132
D + + + +P DD L + DI+IGK
Sbjct: 449 DTEKKVGLTNTETLEKPDRETTLRMRGGTAYDKLDDDGLVIPGKRVLGDDIIIGKTMPLQ 508
Query: 133 ---AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
E+G D S LK TE G+V +V+L++N +G F V +R V
Sbjct: 509 DNSEELGQRRANHTKRDSSTPLKSTENGIVDQVILTTNGEGFKFVKVRVRS----VRIPQ 564
Query: 182 LGDKFSSMHGQKGVLGFLEQT---------------------PAQ-----LLEAALGK-G 214
+GDKF+S HGQKG +G +T P++ L+E +GK G
Sbjct: 565 MGDKFASRHGQKGTVGITYRTEDMPFTAQGIVPDLIINPHAIPSRMTIGHLVECLIGKVG 624
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 274
A G ATPF T G VS L +G + G FE +
Sbjct: 625 AIMGTEGDATPFTDVTVGS--------VSDTLKTLGFQPRG-------------FEVLHN 663
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
L L F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 664 GHTGKKLTAQLYF-GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 719
>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1129
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 127/473 (26%), Positives = 182/473 (38%), Gaps = 126/473 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL L YPQ+P+ + +G
Sbjct: 669 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQKPMVKTRTIELVG 728
Query: 73 RP--------------------EDSLVMNQASLECGVFRSESYKAEV-------DNKDIQ 105
ED+L++N+ASL+ G R + + V + +
Sbjct: 729 YERLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNVTMIRKYPNGTHDR 788
Query: 106 VKSRPSDDMLNFGK----IQSKS----------GDIVIGKYAEIGADHS----------- 140
+ P D+ N K IQ GDI + K A+ +
Sbjct: 789 LADAPKDENGNVQKRYDIIQMDGIAGVGERVDPGDIYVNKQTPTNANDNSAAMDGAVAAS 848
Query: 141 -----IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 195
+ K G + KV+LS ++ V IRQ+ LGDKFSS HGQKGV
Sbjct: 849 YRNTPMSYKSPVAGYIDKVMLSETENDNTLVKVLIRQT----RRPELGDKFSSRHGQKGV 904
Query: 196 LGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFAT 228
G + T +++E GK G G + Y T F
Sbjct: 905 CGLIVNQEDMPFNDQGVCPDSIMNPHGFPSRMTVGKMIELISGKAGVLTGKLRYGTAF-- 962
Query: 229 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
GG E +S++L +H F + + I L + +F
Sbjct: 963 --GGSKVED----MSKIL-------------IEHGFSYSGKDMLTSGITGESL-EAFVFF 1002
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI +GA+ L
Sbjct: 1003 GPIYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLL 1062
Query: 349 HERL-----KCKNVANVIQRVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 395
ERL K + A ++G +C C ++ + K +PY AKLL QEL
Sbjct: 1063 LERLMISSDKFEVCACETCGIMGYNGWCPYCKTSQKVAKLTIPYAAKLLFQEL 1115
>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
Length = 999
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 198/494 (40%), Gaps = 124/494 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YPQ P+
Sbjct: 533 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMV 589
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 590 KSKTIELTNFDKVPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 649
Query: 98 EVDNKDIQVKSRPSDDMLNFGKI----------------QSKSGDIVIGKYAEIGADHSI 141
N+ P D L I Q ++ I+I K E+ A SI
Sbjct: 650 RYANQTFDRIMGPVKDALTNKVIFKHDVLDTDGIVSPGEQVQNKQIMINK--EMPAVTSI 707
Query: 142 K-----------------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
K +E V +V++S+N + + +RQ+ +GD
Sbjct: 708 NPLEGQSPQVPYTAVPISYKGSEPSYVERVMVSANAEEDFLIKILLRQT----RIPEIGD 763
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKGV G + T + LE GK G +
Sbjct: 764 KFSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 823
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G Y T F S + Q ++L+ G ++ K +F + P++
Sbjct: 824 GKFHYGTAFGGS-------KVQDIQAELVR------HGFNYMGKDFFYSGITGAPLE--- 867
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ D
Sbjct: 868 ------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERD 921
Query: 338 CLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLL 391
CLI++GAS + ERL +V + R+ +C C S+ + K ++PY KLL
Sbjct: 922 CLISYGASMLIMERLMISSDAFEVDVCRICGRLAYCSWCHFCQSSAHVSKISMPYACKLL 981
Query: 392 SQELSFSMGITLKF 405
QEL+ SM + K
Sbjct: 982 FQELT-SMNVVPKL 994
>gi|6606115|gb|AAF19070.1|AF107798_1 DNA-dependent RNA polymerase II RPB140 [Capronia pilosella]
Length = 937
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 173/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 553 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 609
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + D L EDS++MNQ+S++ G+FRS Y+ D+
Sbjct: 610 LARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDS 669
Query: 102 KDI-------QVKSRPSDDML-----NFGKIQSK---------SG-DIVIGKYAEIGADH 139
+ Q + D L + KI SG DI++GK A + D
Sbjct: 670 EKSVGHSVMEQFEKPTRTDTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDA 729
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++ +DG FA V +R + + +GD
Sbjct: 730 EELGQRQKQHIKRDVSTPLRSTESGIVDQVMLTTTNDGHRFAKVRVRTT----KTPQIGD 785
Query: 185 KFSSMHGQKGVLGFLEQTP--------------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G +T A L+E L K A
Sbjct: 786 KFASRHGQKGTIGITYRTEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLR 845
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ VS LL +G ++ G ++ + L
Sbjct: 846 GDEGDATPFTKVT---VTQ-----VSDLLRRMGYQSRGFEVMYNGHTGRKLV-------- 889
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 890 ------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937
>gi|114579608|ref|XP_001145162.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 6 [Pan
troglodytes]
Length = 1070
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 621 MYQCQM-GKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 740 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 798
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 799 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 856
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 857 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 912
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 913 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 958
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 959 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1018
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1019 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|219852749|ref|YP_002467181.1| DNA-directed RNA polymerase subunit B' [Methanosphaerula palustris
E1-9c]
gi|219547008|gb|ACL17458.1| RNA polymerase Rpb2 domain 6 [Methanosphaerula palustris E1-9c]
Length = 604
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 187/455 (41%), Gaps = 99/455 (21%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
QA+GF + N +R DT L Y Q+ L S+ +G RP
Sbjct: 159 QALGFCSANMKLRPDTRGHLLHYVQKSLTRTQTSELIGSDDRPAGQNFVVAILSYEGFNI 218
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE-----------VDNKDIQV---------KSRPS 111
ED+L+ N+AS++ G+ RS +Y+ E ++ D +V K+
Sbjct: 219 EDALIFNRASIDRGLGRSHFLRTYEGEERRYPGGQVDRIEIPDTEVTGAHGEEYYKNLDD 278
Query: 112 DDMLNFGKIQSKSGDIVIGKYA---------------EIGADHSIKLKHTERGLVLKVLL 156
D ++N S+ D++IGK + E D S+ ++ E G+V V++
Sbjct: 279 DGIINPETTVSEK-DVLIGKTSPPRFLEEPSSDLITVEKRRDTSVTMRSNEHGIVDTVII 337
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 216
+ ++ V R +GDKF+S HGQKGV+G + P + +
Sbjct: 338 TEGENSSRLVKVRTRDP----RIPEIGDKFASRHGQKGVIGLI--APQEDMPFTESGMVP 391
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
D +++ P A + I + ++ + G R +G F + L +
Sbjct: 392 DIVIN---PHAIPSRMTIGHMLEMIGGKVGSLEGRRINGTAFSGE---LEADLRSSLKKF 445
Query: 277 AFICLVRSLIFTWIT-------------FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
F R +++ +T +YQ+ HM K+ R+ G Q LT +P R
Sbjct: 446 GFSPTGREVMYDGLTGKRFTADIYVGVIYYQKLYHMVSSKMHARSRGPVQVLTRQPTEGR 505
Query: 324 KRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYC 370
R GG+ FGEM+ D +I HGA+ L ERL KC VA ++ R C
Sbjct: 506 AREGGLRFGEMERDVMIGHGAAMALKERLLDESDKVQQYVCAKCGMVA-MLDRKRNTTRC 564
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
+C S DI + Y KLL E+ SMGI +
Sbjct: 565 LVCGSETDIYYVEMSYAFKLLLDEMK-SMGIAPRM 598
>gi|3746592|gb|AAC64011.1| RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 261
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 16 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 71
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 72 MTYTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 131
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L + IF
Sbjct: 132 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 169
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGAS L E
Sbjct: 170 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 229
Query: 351 RL 352
RL
Sbjct: 230 RL 231
>gi|402891934|ref|XP_003909183.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Papio anubis]
Length = 1079
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|294495209|ref|YP_003541702.1| DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii
DSM 5219]
gi|292666208|gb|ADE36057.1| DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii
DSM 5219]
Length = 604
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 201/493 (40%), Gaps = 108/493 (21%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ G++P H + +TM +L Q IG T+N +R DT L Y
Sbjct: 129 SLILGICAGMVPYPEHNASPRITMGAAML-------KQCIGVSTSNLKLRPDTRAHVLHY 181
Query: 58 PQRPLFWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS----- 92
PQ+ L D + RP ED+LV N+ S+E G+ RS
Sbjct: 182 PQKALTRTQTCDSIHFDERPAGQNFVVAVMSYEGYNIEDALVFNKGSIERGLGRSHFVRT 241
Query: 93 -----------ESYKAEVDNKDIQVKSRPSDDMLNF---GKIQSKS----GDIVIGKYA- 133
+ K E+ + + + +R ++ N G + ++ ++IGK +
Sbjct: 242 FEGEERRYPGGQEDKFEIPDSEYR-GARSAEAYANLDVDGLVNPETTVGPNSVLIGKTSP 300
Query: 134 --------------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
E + +I ++ E+G+V VLL+ + +G V +R
Sbjct: 301 PRFLEEQTDFGITVEQRRESAITMRSNEKGVVDTVLLTESINGTRLTKVKVRDQ----RI 356
Query: 180 ACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQH 238
+GDKF+S HGQKGV+G + P Q + D +++ +A P + G V+
Sbjct: 357 PEIGDKFASRHGQKGVIGLI--VPYQDMPFTESGMVPDLVLNPHAIPSRMTVGHVL---- 410
Query: 239 QSFVSQLLNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIF 287
+ ++ + G R F + H F E D + V++ IF
Sbjct: 411 EMIGGKVGSIEGRRIKATAFSGENEDDLRAGLQNHGFSHTGKEVFYDGVTG-KKVQADIF 469
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
+ YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D +I HGA+
Sbjct: 470 VGVILYQKLHHMVASKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMT 529
Query: 348 LHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
L ERL C +A R YC C S DI + + Y KLL E
Sbjct: 530 LKERLLDESDKVEELVCGNCGMIA-TFDRRRNVRYCSNCGSETDIHRVEMSYAFKLLLDE 588
Query: 395 L-SFSMGITLKFD 406
+ S + L+ D
Sbjct: 589 IKSLGVAPRLRLD 601
>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 1139
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 134/480 (27%), Positives = 192/480 (40%), Gaps = 124/480 (25%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 679 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 738
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSES------------------ 94
P ED+LV+N++S++ G R E+
Sbjct: 739 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTQDI 798
Query: 95 ---YKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG------ADHSIKLKH 145
+ + + K I D L +Q SG I I K A+ + K
Sbjct: 799 IGGMRVDENGKPIWQHEPLGPDGLGEVGVQVTSGQIYINKSVPTNSGEGVLANTQAQYKE 858
Query: 146 T-------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 198
T E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 859 TPVIYRAPEPSRIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGI 914
Query: 199 L--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTG 231
+ T +++E GK G +G + Y T F G
Sbjct: 915 IVNHEDMPFNDDGISPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCF----G 970
Query: 232 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
G E +S++L G SG ++ CL ++ IF
Sbjct: 971 GSKLED----MSRILVDKGFNYSGKDMLYSGITGECL--------------QAYIFFGPI 1012
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ER
Sbjct: 1013 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1072
Query: 352 LKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
L + A +V + ++G +C C SA+ K +PY AKLL QEL SM I +
Sbjct: 1073 LMISSDAFEVDVCDKCGLMGYSGWCSTCKSAEHNNKMTIPYAAKLLFQEL-LSMNIAPRL 1131
>gi|4867866|emb|CAB43074.1| RNA polymerase II [Mitreola petiolata]
Length = 261
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 21 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 76
Query: 198 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 230
E P QL+E +GK A G ATPF T
Sbjct: 77 MTYTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 136
Query: 231 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 290
+S+ L+ G + G ++ + L + IF
Sbjct: 137 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 174
Query: 291 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 350
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 175 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 234
Query: 351 RL 352
RL
Sbjct: 235 RL 236
>gi|384253175|gb|EIE26650.1| DNA-directed RNA polymerase III, subunit 2 [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 142/515 (27%), Positives = 199/515 (38%), Gaps = 140/515 (27%)
Query: 8 SCGIIPSHLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTL 51
+CG+ +HL+ + G + Y SP QA+G N +DTL
Sbjct: 674 NCGVATTHLEIEPFTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNVMDTL 733
Query: 52 LQQLFYPQRPLFWILISDCLG--------------------RPEDSLVMNQASLE----- 86
L L YPQRPL + +G ED+++MN+ASL+
Sbjct: 734 LYLLVYPQRPLLTTKTIELVGFDKLGAGQNATVAVMSYSGYDIEDAIIMNRASLDRGFGR 793
Query: 87 CGVFRSESY---KAEVDNKDIQV-------KSRPS--------DDMLNFGKIQSKSGDIV 128
C V R K + ++D V +S+P+ D + G+I S G+I+
Sbjct: 794 CIVLRKYGTVLKKHQNRSQDTVVAAPLPPGQSKPTGRHKLLDEDGLAAPGEIAS-PGEIL 852
Query: 129 IGKYAEIG-------------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 169
I K + A S K E +V KVLL++NDDG
Sbjct: 853 INKQVPMSTKDPLPHGMVSLPPSAYKPAPVSWKGPPGESCIVDKVLLTNNDDGHTVIKTL 912
Query: 170 IRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ-----------------TP 203
+R + +GDKFSS HGQKGV+G F E+ T
Sbjct: 913 MRHT----RRPEVGDKFSSRHGQKGVVGSIVAQEDMPFSERGICPDLIMNPHGFPSRMTV 968
Query: 204 AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 262
++LE K A G Y T F STG + + S L+ G ++ K
Sbjct: 969 GKMLELIGSKAAVQSGRFHYGTAFGESTG--LADNVDSISKTLV------EHGFSYSGKD 1020
Query: 263 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 322
P++ +LIF +YQ+ HM DK+ R G LT +P
Sbjct: 1021 QLTSGSSGEPLE---------ALIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEG 1071
Query: 323 RKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN------------VANVIQRVVGGPYC 370
R R GG+ GEM+ DCLI +GAS L ERL + + VG C
Sbjct: 1072 RSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVHVCNHCGLLGYFDANVGCAVC 1131
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
S+DD+ +PY KLL QEL SM I +
Sbjct: 1132 PSTKSSDDMSTLKLPYACKLLFQELQ-SMNIVPRL 1165
>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Melanomma radicans]
Length = 936
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 167/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 552 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 608
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y+A +
Sbjct: 609 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 668
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I D
Sbjct: 669 EKRIGVNVLERFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPTDA 728
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 729 KELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 784
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K G+
Sbjct: 785 KFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGSLK 844
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G + G ++ + L
Sbjct: 845 GNEGDATPFTDVT--------VDGVSNLLAQHGYQQRGFEVMYNGHTGKKL--------- 887
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 888 -----RAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 936
>gi|410337759|gb|JAA37826.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410337761|gb|JAA37827.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
Length = 1135
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|114579600|ref|XP_001145399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 8 [Pan
troglodytes]
gi|410228170|gb|JAA11304.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410261860|gb|JAA18896.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410261862|gb|JAA18897.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410303046|gb|JAA30123.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410303048|gb|JAA30124.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
Length = 1135
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|426336845|ref|XP_004031665.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Gorilla gorilla gorilla]
Length = 1079
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|402891940|ref|XP_003909186.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 5
[Papio anubis]
Length = 924
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 475 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 533
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 534 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 593
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 594 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 652
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 653 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 710
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 711 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 766
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 767 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 812
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 813 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 872
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 873 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 923
>gi|402891936|ref|XP_003909184.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Papio anubis]
Length = 1070
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 621 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 740 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 798
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 799 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 856
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 857 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 912
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 913 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 958
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 959 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1018
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1019 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|426336847|ref|XP_004031666.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Gorilla gorilla gorilla]
Length = 1070
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 621 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 740 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 798
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 799 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 856
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 857 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 912
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 913 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 958
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 959 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1018
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1019 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
Length = 1158
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 133/491 (27%), Positives = 192/491 (39%), Gaps = 124/491 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + YQ QAIG N R+DTLL + YPQ P+
Sbjct: 679 ILGVVSGLIPYPHHNQSPRNT--YQC-AMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMV 735
Query: 64 WILISDCLG--------------------RPEDSLVMNQASLE-----CGVFR------- 91
+ D + ED++V+N+ASL+ C VF+
Sbjct: 736 KTRVLDLVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIK 795
Query: 92 ---SESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKS---------------GDIVIGKYA 133
+ SY V D + P + F + S G I+I K
Sbjct: 796 KYANGSYDRIVGPPDFDSLAAPGGAGMGFRNAKYSSLDADGISRVGGIVQNGAIMINKEQ 855
Query: 134 EIGADHSIKLKH-----------TERG----LVLKVLLSSNDDGKNFAVVSIRQSVNMVH 178
+ S+ + T +G V KVLL+S++ V IRQ+
Sbjct: 856 PTQFNDSVDGRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQT----R 911
Query: 179 SACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALG 212
+GDKFSS HGQKGV G + Q T +++E G
Sbjct: 912 RPEIGDKFSSRHGQKGVCGTIRQQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAG 971
Query: 213 K-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-NSGITFIFKHYFLFCLFE 270
K G G +Y T F G +L+C +G + K Y +
Sbjct: 972 KAGVLTGRRAYGTAFGEKYGSA---------DHVLDCSRELVKNGFNYAGKDYLTSGITG 1022
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ IF +YQ+ HM DK+ R G LT +P R R GG+
Sbjct: 1023 EPIEC---------YIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLR 1073
Query: 331 FGEMKCDCLIAHGASGNLHERLKCKN---VANVIQ--RVVGGP-YCRICNSADDIIKANV 384
GEM+ DCLI +GAS L ERL + A+V Q R++G +C+ C S + ++ +
Sbjct: 1074 LGEMERDCLIGYGASMLLMERLMLSSDAFSADVCQGCRMLGYEGWCQHCKSEEKVVSIRI 1133
Query: 385 PYGAKLLSQEL 395
PY KLL QEL
Sbjct: 1134 PYACKLLFQEL 1144
>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
Length = 934
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 171/416 (41%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ LLG+ IIP H Q+ YQS QA+GF TN + R+DT+ L+YPQ
Sbjct: 550 AMLLGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQ 604
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS+VMNQ+S++ G+FRS +++
Sbjct: 605 KPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLFFRSYT 664
Query: 100 DNKD------IQVKSRPSD-DMLNFGK---------------IQSKSGDIVIGKYAEIGA 137
D + +++ +P+ D L I+ DI+IGK + I
Sbjct: 665 DCEKRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIAPGIRVSGEDIIIGKTSPINP 724
Query: 138 DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D+ S L+ TE G+V V+L++N DG + V +R + +
Sbjct: 725 DNAELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTT----KIPQI 780
Query: 183 GDKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G +E P A L+E L K A
Sbjct: 781 GDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLSKVAT 840
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
GL ATPF T VS LL G ++ G ++ + L
Sbjct: 841 LKGLEGDATPFTDVT--------VDSVSDLLREQGYQSRGFEILYHGHTGRKL------- 885
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ F
Sbjct: 886 -------RAQCFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 934
>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1219
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 199/484 (41%), Gaps = 129/484 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 752 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 811
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD 112
P ED+LV+N+ S++ G R + ++ V N ++ S +
Sbjct: 812 YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN--LKSYSNGTK 869
Query: 113 DML------NFGKI----------------QSKSGDIVIGKYAEIGADH----------- 139
DML N I Q +G++ I K A+
Sbjct: 870 DMLTPPSYENDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQANSFGIGGPDPNRP 929
Query: 140 ------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
+ K + + +VLLS ++ V RQ+ +GDKFSS HGQK
Sbjct: 930 INYMPTPMTYKLPDPAYIDQVLLSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQK 985
Query: 194 GVLG---------FLEQ-----------------TPAQLLEAALGKGACDGLMSYATPFA 227
GV+G F +Q T ++LE GK G++S +
Sbjct: 986 GVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKA---GVLSGQHGYG 1042
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
T GG E+ +SQ+L + G ++ K Y + + + +F
Sbjct: 1043 TCFGGSPVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---------YVF 1084
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1085 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1144
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1145 LLERLMISSDRHEIDVCEKCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQEL-MSMNV 1203
Query: 402 TLKF 405
T +
Sbjct: 1204 TARL 1207
>gi|402891938|ref|XP_003909185.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Papio anubis]
Length = 952
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 503 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 561
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 562 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 621
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 622 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 680
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 681 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 738
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 739 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 794
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 795 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 840
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 841 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 900
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 901 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|397465556|ref|XP_003804557.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Pan
paniscus]
Length = 1135
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|114579606|ref|XP_001144853.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Pan troglodytes]
Length = 952
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 503 MYQCQM-GKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 561
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 562 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 621
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 622 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 680
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 681 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 738
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 739 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 794
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 795 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 840
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 841 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 900
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 901 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|339906100|ref|YP_004732897.1| hypothetical protein WIV_gp114 [Wiseana iridescent virus]
gi|308051971|gb|ADO00458.1| hypothetical protein [Wiseana iridescent virus]
Length = 1127
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/481 (26%), Positives = 199/481 (41%), Gaps = 104/481 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+ G+ GIIP +T + + K QAIGF + N++ +T+ L YPQ+PL
Sbjct: 672 MFGIVAGIIPFSDRTQSARNCFYTSMVK---QAIGFVPCH-NLKTETVSHTLNYPQKPLV 727
Query: 64 WILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKA----EV 99
I++ G EDS+++N+AS+E G+F + +Y E
Sbjct: 728 TTDIAEFNGLNEYPNGINAIVAIACYTGYNQEDSVILNKASIERGLFGTTTYNTFTAEET 787
Query: 100 DNK------DIQVKSRPSDDMLNFG----------KIQSKSGDIVIGKYA-------EIG 136
N DI + S D N+G + Q K GD++IG+ E
Sbjct: 788 KNGIVEERIDIPIDSVKVRDN-NYGLLSDSGIVRLRQQVKKGDVLIGRITIKNKNEQEKV 846
Query: 137 ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 196
D+SI ++ E G V ++ + D + +V + + +GDKF S QKG
Sbjct: 847 VDNSIVVQQGEEGYVDRITDNIVDGCRKVKIV-----IGQLRIPEIGDKFCSGMAQKGTC 901
Query: 197 GFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQ----L 245
G + E P + + M+ AT G + QS Q +
Sbjct: 902 GMIYAQEDMPFTQSGMTPDIIINPNCIPSRMTINQIIATVMGKLYLTNPQSKFKQGNPFM 961
Query: 246 LNCIGARNSGITFIFKHYF-------LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 298
N N + KH F ++C F ++S IF T+Y + H
Sbjct: 962 ENSSTILNELCDELTKHGFDSTGGETMYCGFTGRR--------IKSKIFIGPTYYHRLKH 1013
Query: 299 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------ 352
M +DK+ R+ G L +P R + GG+ FGEM+ DC++ HGA+ L+ER+
Sbjct: 1014 MVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLCSDP 1073
Query: 353 -------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C +++ + C +C S +I K N+PY K L QEL+ MGI +K
Sbjct: 1074 FQIDVCTNCGMISSTHHK------CNVCGSF-NIKKCNIPYSCKNLFQELN-GMGIKIKI 1125
Query: 406 D 406
+
Sbjct: 1126 E 1126
>gi|402891932|ref|XP_003909182.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Papio anubis]
Length = 1135
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|291244544|ref|XP_002742157.1| PREDICTED: RNA polymerase I polypeptide B-like [Saccoglossus
kowalevskii]
Length = 1133
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 188/473 (39%), Gaps = 114/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFW--------------------I 65
+YQ Q Q +G P R D L +L PQ P+
Sbjct: 679 MYQCQM-GKQTMGTPVHTYLHRTDNKLYRLQTPQSPIVRPCSYDTYNIDNYPLGTNAVVA 737
Query: 66 LISDCLGRPEDSLVMNQASLECGVFRSESYKAEV-DNKDIQVKSRPS---------DDML 115
+IS ED++++N++S E G YK EV D K I + S DD
Sbjct: 738 VISYTGYDMEDAMILNKSSYERGFAHGTIYKTEVIDLKKISGEKGKSISLMFGCLPDDRR 797
Query: 116 NFGKIQ----------SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGKN 164
G + + GD + G E +++ KH ER +V V L ND G
Sbjct: 798 TEGHLDLDGLPPIGAIIEPGDPLCGYINVETNVANTLSFKHHERAVVDNVKLCGNDLG-T 856
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---LGFLEQTP------------------ 203
+ S+ + + +GDKFSS HGQKGV L +E P
Sbjct: 857 AECQKVYISLRIQRNPTIGDKFSSRHGQKGVCSQLWPVENMPFSESGMTPDIIFNPHGFP 916
Query: 204 -----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
++E+ GK G+ GL ATPF S + + ++L G G
Sbjct: 917 SRMTIGMMIESMAGKSGSLHGLSHDATPFTFSEDRPAID----YFGRMLREAGYNYYGNE 972
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
++ +D + + IF I +YQ+ HM EDK + R TG LT
Sbjct: 973 RMYSG----------VDGRE----LEADIFVGIVYYQRLRHMVEDKFQVRTTGPIDILTH 1018
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQR- 363
+PV RKR GGI FGEM+ D L++HG S L +RL KC + +IQ+
Sbjct: 1019 QPVKGRKRAGGIRFGEMERDALLSHGTSFLLQDRLFHCSDSSTTQLCTKCGSFQGIIQQK 1078
Query: 364 -----------VVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLK 404
G YC++C SA+ I VPY + L EL + S+ TL+
Sbjct: 1079 KSALLEGSSVNSSGHWYCQMCKSAEHIQLLAVPYVFRYLLAELAAMSIKTTLQ 1131
>gi|397465560|ref|XP_003804559.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3 [Pan
paniscus]
Length = 1070
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 621 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 740 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 798
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 799 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 856
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 857 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 912
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 913 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 958
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 959 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1018
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1019 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|426336843|ref|XP_004031664.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Gorilla gorilla gorilla]
Length = 1135
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|332257260|ref|XP_003277727.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Nomascus leucogenys]
Length = 1070
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 621 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 740 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 798
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 799 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 856
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 857 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE 912
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 913 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 958
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 959 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1018
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1019 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
Length = 937
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 173/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 553 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKP 609
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + D L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 610 LARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYQDQ 669
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ I+ +P+ +D + ++ DI++GK A + D
Sbjct: 670 EKSVGHAVIESFEKPTRADTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDA 729
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++ +DG FA V +R + +GD
Sbjct: 730 EELGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTNDGHRFAKVRVRTT----KVPQIGD 785
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 786 KFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLR 845
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ +S +L +G ++ G ++ + L
Sbjct: 846 GEEGDATPFTKVT---VTQ-----ISDILRKMGYQSRGFEVMYNGHTGKKLV-------- 889
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 890 ------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937
>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
24927]
Length = 1166
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 192/494 (38%), Gaps = 132/494 (26%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N +R+DTLL + YPQ+P+
Sbjct: 694 ILGAVAGLIPFPHHNQSPRNT--YQCAM-GKQAIGAIAYNQFLRIDTLLYLMVYPQQPMV 750
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYKAEVDNKD 103
+ + ED+LV+N++S++ G R + + V
Sbjct: 751 KTRTIELIKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTT-- 808
Query: 104 IQVKSRPSDDMLNFG--------------KIQSKSGDIVIGKYAEIGA------------ 137
+K P+ M G +I G +G+ E G
Sbjct: 809 --LKKHPNQTMDRIGDRKSDEEGNPIKKHRIIEGDGLAAVGERIEQGESYILKQVPTHTA 866
Query: 138 ---------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D ++ K T+ + KV++S ++ + V RQ+ L
Sbjct: 867 NNPAEGPQNRLGDYKDAAMNYKLTDPAYIDKVMISCSESEQTIIKVLTRQT----RRPEL 922
Query: 183 GDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GA 215
GDKFSS HGQKGV G + Q T +++E GK G
Sbjct: 923 GDKFSSRHGQKGVCGIIVQQEDMPFNDFGTCPDIIMNPHGFPSRMTVGKMIELLAGKAGV 982
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPM 273
G + Y T F G + + + +S N G SGIT
Sbjct: 983 LSGNLQYGTAFG---GSKVQDMSEILISHGFNYSGKDFVTSGITG--------------- 1024
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+++ IF +YQ+ HM +DK+ R G LT +P R R GG+ GE
Sbjct: 1025 ------ESLQAYIFFGPIYYQKLKHMVQDKMHSRARGPRAVLTRQPTEGRSRDGGLRLGE 1078
Query: 334 MKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYG 387
M+ DCLIA+GAS L ERL + + I ++G +C C S+ + + +PY
Sbjct: 1079 MERDCLIAYGASQLLLERLMLSSDVHEIDLCENCGLMGYSSWCTTCESSKFVTRMKIPYA 1138
Query: 388 AKLLSQELSFSMGI 401
AKLL QEL SM +
Sbjct: 1139 AKLLLQEL-LSMNV 1151
>gi|397465562|ref|XP_003804560.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Pan paniscus]
Length = 952
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 503 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 561
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 562 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 621
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 622 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 680
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 681 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 738
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 739 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 794
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 795 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 840
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 841 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 900
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 901 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|340052083|emb|CCC46353.1| DNA-directed RNA polymerase I, fragment, partial [Trypanosoma vivax
Y486]
Length = 1112
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 196/462 (42%), Gaps = 71/462 (15%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL- 62
LLG+ GIIP + + +QS QA+G N IR+DT+L YPQRPL
Sbjct: 659 LLGVVAGIIPFPHHNQSARNT--FQSAM-GKQALGTIAYNQYIRMDTVLMLGAYPQRPLC 715
Query: 63 ----FWILISDCLGRP---------------EDSLVMNQASLE-----CGVFRS---ESY 95
+ + LG ED+ V N+ SL+ C V R E
Sbjct: 716 RSKAMSLTNYEALGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVELQ 775
Query: 96 KAEVDNKDIQVKSRPS---DDMLNFGKIQSKSG-----DIVIGKYAEIGAD----HSIKL 143
+ D + P+ LN I SK D+++ +Y A + +
Sbjct: 776 RLPNGEYDFILPGDPTVSKHRALNSDGIASKGAIVRQFDVLVNRYTPAAASEPRPNPLIY 835
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL----GDKFSSMHGQKGVLGFL 199
K+ + +V V++S D + + Q + +V GDKFSS HGQKGV+G +
Sbjct: 836 KYPQPAVVDHVVISPPGDSDR--SLDVEQKIKVVTREVRIPEPGDKFSSRHGQKGVVGLI 893
Query: 200 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG-------- 250
+ E + D +M+ + T G + E S VS L G
Sbjct: 894 TDGVNMPFNEMGI---TPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGKFGDGTAFAGD 950
Query: 251 -ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 309
A + G + +H F + + I L+++ +F +YQ+ HM DK+ R T
Sbjct: 951 NAEDMGAELV-RHGFNYHGKDLFYSGITGE-LLQAYVFFGPIYYQRLKHMVTDKMHARAT 1008
Query: 310 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG- 366
G LT +P R R GG+ GEM+ DC++ +GAS L+ERL + I R G
Sbjct: 1009 GPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLYERLLLSSDLFTIDACRSCGF 1068
Query: 367 ---GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
YC CN+ + + + NVPY KLL QEL MGI+ +
Sbjct: 1069 MGYSGYCSYCNTKNTVSRVNVPYAFKLLLQELQ-GMGISTRL 1109
>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
Length = 1135
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 199/501 (39%), Gaps = 139/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N N R+D+L+ L YP P+
Sbjct: 670 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNHNNRIDSLMYNLVYPHAPMV 726
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 727 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 786
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 787 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 845
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E + +V++S+N + + +RQ+
Sbjct: 846 -PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMVSANAEEDFLIKILLRQT---- 893
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
GDKFSS HGQKGV G + EQ T + LE
Sbjct: 894 -RIPRGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 952
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 953 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 999
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1000 TPLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1050
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1051 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISM 1110
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1111 PYACKLLFQELT-SMNVVPKM 1130
>gi|426336849|ref|XP_004031667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Gorilla gorilla gorilla]
Length = 952
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 503 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 561
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 562 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVL 621
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 622 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 680
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 681 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 738
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 739 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 794
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 795 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 840
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 841 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 900
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 901 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
II]
gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
II]
Length = 1287
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 124/481 (25%), Positives = 188/481 (39%), Gaps = 111/481 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + K ++GF N +R D++L L YPQ+PL
Sbjct: 815 ILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGSVGF---NQFLRCDSVLYLLVYPQKPLC 871
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYKAE 98
+ + ED++VMN+AS++ C V + ++ + +
Sbjct: 872 KTRTIEMINFEQLPAGQNSSVAVMSFAGYDIEDAIVMNKASVDRGFARCFVMKRQTIELQ 931
Query: 99 --------------------VDNKDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKYAEI 135
N+ K+ +D + N G +Q DI++ K + I
Sbjct: 932 KLPNGLSERVVRPISVGSGNTGNRRFSFKNDSILDNDGVCNVG-VQVSEDDIIVNKMSPI 990
Query: 136 GADH----------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
+K K + +V+L+ N DG V RQ+
Sbjct: 991 NTREYVGDPSQFDLSEYKPSPVKYKGPTSSYIDRVILTENADGNQIYKVITRQT----RR 1046
Query: 180 ACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQH 238
LGDKFSS HGQKGV+G + Q E G C L+ F +
Sbjct: 1047 PELGDKFSSRHGQKGVVGLIISQEDLPFSET----GWCPDLIMNPHGFPS---------- 1092
Query: 239 QSFVSQLLNCIGARNSGITFIFKHYFLF----------CLFECPMDWIAFICL------- 281
+ V +LL I ++ S + +++ F CL E + L
Sbjct: 1093 RMTVGKLLELISSKASVLDGNYRYGTAFGGTPLEESAKCLVEHGFHYSGKEYLTSGTTGE 1152
Query: 282 -VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
+ + IF +YQ+ HM DK+ R G Q LT +P R + GG+ GEM+ DCL+
Sbjct: 1153 AIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLV 1212
Query: 341 AHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 394
A+GAS L ERL NV N YC C S+ D+ +PY KLL QE
Sbjct: 1213 AYGASNLLIERLMLNSDVFETNVCNQCGLFGYNNYCHYCKSSQDVSIIRLPYACKLLFQE 1272
Query: 395 L 395
L
Sbjct: 1273 L 1273
>gi|38614338|gb|AAH60656.1| Polymerase (RNA) I polypeptide B [Mus musculus]
Length = 1135
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 187/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL F+ + + +G
Sbjct: 686 MYQCQMGK-QTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + +D L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGEDNLVFGVKPGDPR 802
Query: 120 IQSKSGD---IVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K D IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F + I +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCICI--TVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
Length = 1137
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 199/501 (39%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YP P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCA-MGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 846
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E V +V++S+N + + +RQ+
Sbjct: 847 -PLQGQSAQV---PYTAV----PISYKGPEPSYVERVMVSANSEEDFLIKILLRQT---- 894
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV G + EQ T + LE
Sbjct: 895 RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 954
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 955 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 1001
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1002 TPLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1052
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1053 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRLAYCSWCHFCQSSANVSKISM 1112
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1113 PYACKLLFQELT-SMNVVPKM 1132
>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
Length = 1154
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 135/502 (26%), Positives = 192/502 (38%), Gaps = 129/502 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G+IP + + YQ QA+G N R+D+++ L YPQRPL
Sbjct: 677 LLGVCAGLIPYPHHNQSPRNT--YQCA-MGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLV 733
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+LV+N+ASL+ G R YK
Sbjct: 734 KSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAK 793
Query: 97 --------------------------AEVDNKDI---QVKSRPSDDMLN--FGKIQSKSG 125
+D + I + P ++N + +SG
Sbjct: 794 KYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESG 853
Query: 126 DIVIGKYAEIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
IG D SI K +VLL+ N+D + V +RQ+
Sbjct: 854 PGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQT---- 909
Query: 178 HSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAAL 211
LGDKFSS HGQKGV G + Q T +L+E
Sbjct: 910 RRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLS 969
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG +Q + +L C G ++ K +
Sbjct: 970 GKAGVVNGTYHYGTAF----GG---DQVKDVCEELAAC------GYNYMGKDMLTSGITG 1016
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P+ + I+ +YQ+ HM DK+ R G LT +P R R GG+
Sbjct: 1017 QPLS---------AYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLR 1067
Query: 331 FGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVG------GPYCRICNSADDIIKANV 384
GEM+ DCLIA+GAS L ERL + + G +C+ C S+ + +
Sbjct: 1068 LGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVIGSKGWCQKCRSSKSMANIKI 1127
Query: 385 PYGAKLLSQELSFSMGITLKFD 406
PY KLL QEL SM I + D
Sbjct: 1128 PYACKLLFQELQ-SMNIVPRLD 1148
>gi|224967092|ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus]
gi|341941989|sp|P70700.2|RPA2_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=DNA-directed RNA
polymerase I 135 kDa polypeptide; Short=RPA135
gi|74137985|dbj|BAE25401.1| unnamed protein product [Mus musculus]
gi|74194733|dbj|BAE25971.1| unnamed protein product [Mus musculus]
gi|148696280|gb|EDL28227.1| RNA polymerase 1-2 [Mus musculus]
Length = 1135
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 187/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL F+ + + +G
Sbjct: 686 MYQCQMGK-QTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + +D L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGEDNLVFGVKPGDPR 802
Query: 120 IQSKSGD---IVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K D IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F + I +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCICI--TVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
str. Silveira]
Length = 1197
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 196/503 (38%), Gaps = 142/503 (28%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N +R+D+LL + YPQ+P+
Sbjct: 724 ILGAVAGLIPYPHHNQSPRNT--YQC-AMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMV 780
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYKAE 98
+ + ED+LV+N+ S++ C VFR Y A
Sbjct: 781 KTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSAN 838
Query: 99 VDNKDIQVKSR------------------PSDDMLNFGKIQSKSGDIVI----------- 129
+ + K R +D + G+ S SG++ I
Sbjct: 839 LKSYSNGTKDRLLGPDRQDGVPIRKHALLDNDGLAAVGEKVS-SGEVYINKATPENALSS 897
Query: 130 --------GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
G A I + + KL + + KV++S+ + V RQ+
Sbjct: 898 GITGSDAGGPIAYIPSPQTYKL--PDPSYIDKVMISTTEGENQLLKVQTRQT----RRPE 951
Query: 182 LGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-G 214
+GDKFSS HGQKGV+G + + T ++LE GK G
Sbjct: 952 VGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1011
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECP 272
G Y T F G + E +S+ N G SGIT
Sbjct: 1012 ILSGQFGYGTAFG---GSPVEEMSAILISKGFNYGGKDYLTSGITG-------------- 1054
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ + +FT +YQ+ HM +DK+ R G LT +P R R GG+ G
Sbjct: 1055 -------EALPAYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLG 1107
Query: 333 EMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKA 382
EM+ DCLIA+G S L ERL C+N +G +C+ C ++ ++K
Sbjct: 1108 EMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG--FMGYLG--WCQRCKTSRGVVKM 1163
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL FSM + +
Sbjct: 1164 VIPYAAKLLVQEL-FSMNVVARL 1185
>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
Length = 1656
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 204/495 (41%), Gaps = 126/495 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG +N +R+D++L + YPQ+P+
Sbjct: 1183 ILGAVAGLIPYPHHNQSPRN--TYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMV 1239
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN-- 101
I ++ P ED+LV+N+ S++ G R + ++ V N
Sbjct: 1240 KSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMK 1299
Query: 102 ------KDIQVKSRP---------------SDDMLNFGKIQSKSGDIVIGKYAE------ 134
KDI S P SD + G+ Q +G++ I K
Sbjct: 1300 SYSNGTKDIL--SPPTYENDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSMSS 1356
Query: 135 --IGADHS---------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
G+D + K + + KV++S+ ++ V RQ+ +G
Sbjct: 1357 GMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQT----RRPEVG 1412
Query: 184 DKFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GAC 216
DKFSS HGQKGV G F +Q T ++LE GK G
Sbjct: 1413 DKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVL 1472
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G Y T F +G + + Q+ + + + G ++ + I F +F P+
Sbjct: 1473 SGQHGYGTCF---SGTPVEQMTQTLIDKGFS-YGGKDYLTSGITGEALPFYVFTGPI--- 1525
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+
Sbjct: 1526 ---------------YYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMER 1570
Query: 337 DCLIAHGASGNLHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKL 390
DCLIA+G S L ERL ++ +V ++ Y C+ C S+ ++K +PY AKL
Sbjct: 1571 DCLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKL 1630
Query: 391 LSQELSFSMGITLKF 405
L QEL SM +T +
Sbjct: 1631 LIQEL-MSMNVTARL 1644
>gi|386780981|ref|NP_001247552.1| DNA-directed RNA polymerase I subunit RPA2 [Macaca mulatta]
gi|355751581|gb|EHH55836.1| hypothetical protein EGM_05119 [Macaca fascicularis]
gi|380817102|gb|AFE80425.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
gi|383422125|gb|AFH34276.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
gi|384949774|gb|AFI38492.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
Length = 1135
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|302772933|ref|XP_002969884.1| hypothetical protein SELMODRAFT_410923 [Selaginella moellendorffii]
gi|300162395|gb|EFJ29008.1| hypothetical protein SELMODRAFT_410923 [Selaginella moellendorffii]
Length = 1005
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 122/241 (50%), Gaps = 54/241 (22%)
Query: 4 LLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
LLG+S IP +H Q+ V +Q+QKH QAIGF + R+DT ++QL+YPQ+P
Sbjct: 608 LLGVSASAIPFLNHNQS----ARVTHQAQKHGKQAIGFYMCDILSRMDTSVRQLYYPQQP 663
Query: 62 LFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSESY---KAE 98
L ++ L RP EDSL++NQ+SL+ G+FRS + +A
Sbjct: 664 LVCTRLAQLLARPELANGVNCVVAVACYGGYNQEDSLILNQSSLDRGLFRSTHFRVHRAT 723
Query: 99 VDNKDIQVK-SRPS---------------DDMLNFGKIQSKSGDIVIGKYAEIGA----D 138
+D ++ RP D L F + K+ D+VIGK A D
Sbjct: 724 LDYSSSDIRFCRPETEVARSNTDGIDKLDSDGLPFIGAEMKAADVVIGKAGRRPASKLVD 783
Query: 139 HSIKLKHTERGLVLKVLLSSND-DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
HS KL+ E+G V +V+ S D +G+ V +R++ +GDKFSSMHGQKGV+G
Sbjct: 784 HSSKLRKLEQGWVDQVVCSGGDEEGERHVRVRLREA----RCPQVGDKFSSMHGQKGVVG 839
Query: 198 F 198
Sbjct: 840 M 840
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 298 HMSEDKVKFRN-TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---- 352
H+SEDK+K+R +G PLT +PV DRKR GG +FGEM+ DCLI+HGAS + ERL
Sbjct: 882 HLSEDKMKWRGASGPVHPLTHQPVKDRKREGGTKFGEMERDCLISHGASATVKERLFFVS 941
Query: 353 ------KCKNVANV-IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C N + I P C CN I ++P+ KLLS EL SMG+ ++F
Sbjct: 942 DRSLVPVCTNCHRLAILNCKQHPRCLFCNPQQRIATLDMPHACKLLSMELR-SMGVDMRF 1000
>gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Ceramothyrium linnaeae]
Length = 936
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 172/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R++T+ L+YPQ+P
Sbjct: 552 SMILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIFLTNFDQRMETMANILYYPQKP 608
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + + L EDS++MNQ+S++ G+FRS Y+A D
Sbjct: 609 LARTMAMEYLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYQDQ 668
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ +P+ DD + ++ DI++GK A + D
Sbjct: 669 EKMIGHAVVEQFEKPTRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIMGKTAPMAPDA 728
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G++ +VLL++ DG FA V +R + +GD
Sbjct: 729 EELGQRMKQHIKRDVSTPLRSTESGVIDQVLLTTTGDGCKFAKVRVRTT----KVPQIGD 784
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K GA
Sbjct: 785 KFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECLLSKVGALR 844
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +T+ +S +L +G + G ++ + L
Sbjct: 845 GDEGDATPFTKVT---VTQ-----ISSILENMGYQRRGFEVMYNGHTGRKLV-------- 888
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 889 ------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 936
>gi|453088008|gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
populorum SO2202]
Length = 1204
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 129/485 (26%), Positives = 195/485 (40%), Gaps = 132/485 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 748 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIELVK 807
Query: 73 RP--------------------EDSLVMNQASLE-----CGVFRS-----ESYK------ 96
ED+LV+N+AS + C VF+ +SY+
Sbjct: 808 YDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMPLKSYQNGYTDR 867
Query: 97 -AEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI------------KL 143
A+ D + + + D ++ G + +GD + K A I +I
Sbjct: 868 LADRDPNNARHRKIGKDGLVEVGS-ELDNGDTYMLKEAPINQVQTIPNSQQRWSPAHMSY 926
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 201
K + KV++++ND + RQ+ +GDKFSS HGQKGV+G L +
Sbjct: 927 KTPDPCYADKVVITANDRNDTILKIQTRQT----RRPEIGDKFSSRHGQKGVVGLLAEQA 982
Query: 202 ------------------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQ 237
T ++LE GK G+++ + T+ GG E
Sbjct: 983 DMPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSGKA---GVLAGKQEYGTAFGGSKVED 1039
Query: 238 HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFI 297
+GA + KH F + +C I L + F I +YQ+
Sbjct: 1040 -----------MGA------VLIKHGFSYSGKDCLTSGITGESLPFYVFFGPI-YYQKLK 1081
Query: 298 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 357
HM +DK+ R TG LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1082 HMVQDKMHARATGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSD 1141
Query: 358 ANVIQRVVGGPYCRICN------------SADDIIKANVPYGAKLLSQELSFSMGITLKF 405
A+ + C+ C S+ +++ +PY AKLL QEL M + +K
Sbjct: 1142 AHDVD------VCQTCGMMGYNNWCQSCSSSRSVVRMTMPYAAKLLIQEL---MSMNVKA 1192
Query: 406 DTQLS 410
QL+
Sbjct: 1193 SLQLA 1197
>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
Length = 1233
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 196/503 (38%), Gaps = 142/503 (28%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N +R+D+LL + YPQ+P+
Sbjct: 760 ILGAVAGLIPYPHHNQSPRNT--YQC-AMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMV 816
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSESYKAE 98
+ + ED+LV+N+ S++ C VFR Y A
Sbjct: 817 KTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK--YSAN 874
Query: 99 VDNKDIQVKSR------------------PSDDMLNFGKIQSKSGDIVI----------- 129
+ + K R +D + G+ S SG++ I
Sbjct: 875 LKSYSNGTKDRLLGPDRQDGVPIRKHALLDNDGLAAVGEKVS-SGEVYINKATPENALSS 933
Query: 130 --------GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 181
G A I + + KL + + KV++S+ + V RQ+
Sbjct: 934 GITGSDAGGPIAYIPSPQTYKL--PDPSYIDKVMISTTEGENQLLKVQTRQT----RRPE 987
Query: 182 LGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-G 214
+GDKFSS HGQKGV+G + + T ++LE GK G
Sbjct: 988 VGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1047
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECP 272
G Y T F G + E +S+ N G SGIT
Sbjct: 1048 ILSGQFGYGTAFG---GSPVEEMSAILISKGFNYGGKDYLTSGITG-------------- 1090
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ + +FT +YQ+ HM +DK+ R G LT +P R R GG+ G
Sbjct: 1091 -------EALPAYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLG 1143
Query: 333 EMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKA 382
EM+ DCLIA+G S L ERL C+N +G +C+ C ++ ++K
Sbjct: 1144 EMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG--FMGYLG--WCQRCKTSRGVVKM 1199
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL FSM + +
Sbjct: 1200 VIPYAAKLLVQEL-FSMNVVARL 1221
>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 1115
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 206/482 (42%), Gaps = 111/482 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQ--LFYPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q + YPQ P
Sbjct: 640 ILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHLMLYPQTP 694
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
+ LG RP ED++V+++AS++ G+ R+ Y AE
Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSRASVDRGLGRTFFFRIYDAE 754
Query: 99 -------------VDNKDIQVKSRPSDDMLNF----GKIQSKS----GDIVIGK------ 131
+ N + ++ + G + S+S GDI+IGK
Sbjct: 755 AKQYPGGMRDTFEIPNAEDNIRGYKGEKAYRLLEEDGVVASESPVHGGDILIGKTSPPRF 814
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G+V V+++ +++G + +R + +
Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRD----MRIPEI 870
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGVLG L + A+ L + D L++ +A P + G + +S
Sbjct: 871 GDKFASRHGQKGVLGILAK--AEDLPYTADGISPDVLINPHAFPSRMTVGMFM----ESI 924
Query: 242 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL-------------IFT 288
+ G++ G F+ + + MD F + +F
Sbjct: 925 CGKAAALRGSQFDGSAFVGEK---MEEVKPVMDAAGFKYSGKETMYDGRTGKSFPVEVFI 981
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+GAS L
Sbjct: 982 GVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMIL 1041
Query: 349 HERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
+RL +C VA +V QR CR+C + +V Y KLL Q
Sbjct: 1042 KDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAFKLLLQ 1098
Query: 394 EL 395
E+
Sbjct: 1099 EM 1100
>gi|355565994|gb|EHH22423.1| hypothetical protein EGK_05684 [Macaca mulatta]
Length = 1039
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 590 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 648
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D ++
Sbjct: 649 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRIL 708
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 709 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 767
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 768 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 825
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 826 SRMTIGMLIESIAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 881
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 882 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 927
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 928 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 987
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 988 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1038
>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum
viride]
Length = 938
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 169/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R+DT+ L+YPQ+P
Sbjct: 554 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNFDQRMDTMANILYYPQKP 610
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 611 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQ 670
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ N +++K + DD L ++ DI+IGK A I D+
Sbjct: 671 EKRIGMNVVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDN 730
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 731 EELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT----KIPQIGD 786
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G + E P A L+E L K A
Sbjct: 787 KFASRHGQKGTIGIIYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVASLS 846
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 847 GYEGDATPFTDVT--------VDNVSKLLREHGYQSRGFEIMYHGHTGRKLV-------- 890
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 891 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938
>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
Length = 934
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 171/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S LLG+ IIP + + YQS QA+GF TN + R+DT+ L+YPQ+P
Sbjct: 550 SMLLGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKP 606
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L I+ C EDS++MNQ+S++ G+FRS +++ D
Sbjct: 607 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDC 666
Query: 101 -----------------NKDIQVKSRPSDDMLNFG----KIQSKSGDIVIGKY------- 132
+ +++K D + G I+ DI+IGK
Sbjct: 667 EKRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDIIIGKTCPINPDN 726
Query: 133 AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
AE+G D S L+ TE G++ +V++++N DG + V +R + +GD
Sbjct: 727 AELGQRSNQHVKRDASTPLRSTESGIIDQVVVTTNQDGMRYVKVRVRTT----KVPQIGD 782
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K
Sbjct: 783 KFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLK 842
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G+ ATPF T VS LL G ++ G ++ + L
Sbjct: 843 GMEGDATPFTDVT--------VDSVSDLLREHGYQSRGFEIMYHGHTGRKL--------- 885
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
RS +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ F
Sbjct: 886 -----RSQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRF 934
>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 1115
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 206/482 (42%), Gaps = 111/482 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQ--LFYPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q + YPQ P
Sbjct: 640 ILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHLMLYPQTP 694
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
+ LG RP ED++V+++AS++ G+ R+ Y AE
Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSRASVDRGLGRTFFFRIYDAE 754
Query: 99 -------------VDNKDIQVKSRPSDDMLNF----GKIQSKS----GDIVIGK------ 131
+ N + ++ + G + S+S GDI+IGK
Sbjct: 755 AKQYPGGMRDTFEIPNAEDNIRGYKGEKAYRLLEEDGVVASESPVHGGDILIGKTSPPRF 814
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G+V V+++ +++G + +R + +
Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRD----MRIPEI 870
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGVLG L + A+ L + D L++ +A P + G + +S
Sbjct: 871 GDKFASRHGQKGVLGILAK--AEDLPYTADGISPDVLINPHAFPSRMTVGMFM----ESI 924
Query: 242 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL-------------IFT 288
+ G++ G F+ + + MD F + +F
Sbjct: 925 CGKAAALRGSQFDGSAFVGEK---MEEVKPVMDAAGFKYSGKETMYDGRTGKSFPVEVFI 981
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+ +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLIA+GAS L
Sbjct: 982 GVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMIL 1041
Query: 349 HERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
+RL +C VA +V QR CR+C + +V Y KLL Q
Sbjct: 1042 KDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSSVSVAYAFKLLLQ 1098
Query: 394 EL 395
E+
Sbjct: 1099 EM 1100
>gi|56694356|gb|AAW22918.1| RNA polymerase II second largest subunit [Sequoiadendron giganteum]
Length = 549
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 161/404 (39%), Gaps = 111/404 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 175 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 231
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 232 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 291
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 292 EKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDD 351
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 352 SAGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRS----VRIPQIGDKF 407
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 408 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 467
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 468 EGDATPFTDVTVDSI--------SKALHKCGYQMRGFETMYNGHTGRKL----------- 508
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 509 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 549
>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
(AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
A4]
Length = 1225
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 204/495 (41%), Gaps = 126/495 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG +N +R+D++L + YPQ+P+
Sbjct: 752 ILGAVAGLIPYPHHNQSPRN--TYQCA-MGKQAIGAIASNQFLRIDSILYLMVYPQKPMV 808
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN-- 101
I ++ P ED+LV+N+ S++ G R + ++ V N
Sbjct: 809 KSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMK 868
Query: 102 ------KDIQVKSRP---------------SDDMLNFGKIQSKSGDIVIGKYAE------ 134
KDI S P SD + G+ Q +G++ I K
Sbjct: 869 SYSNGTKDIL--SPPTYENDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSMSS 925
Query: 135 --IGADH---------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
G+D + K + + KV++S+ ++ V RQ+ +G
Sbjct: 926 GMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQT----RRPEVG 981
Query: 184 DKFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GAC 216
DKFSS HGQKGV G F +Q T ++LE GK G
Sbjct: 982 DKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVL 1041
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G Y T F +G + + Q+ + + G ++ K Y + + +
Sbjct: 1042 SGQHGYGTCF---SGTPVEQMTQTLI----------DKGFSYGGKDYLTSGITGEALPF- 1087
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+
Sbjct: 1088 --------YVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMER 1139
Query: 337 DCLIAHGASGNLHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKL 390
DCLIA+G S L ERL ++ +V ++ Y C+ C S+ ++K +PY AKL
Sbjct: 1140 DCLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKL 1199
Query: 391 LSQELSFSMGITLKF 405
L QEL SM +T +
Sbjct: 1200 LIQEL-MSMNVTARL 1213
>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
15908]
gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
15908]
Length = 1172
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 119/470 (25%), Positives = 190/470 (40%), Gaps = 122/470 (25%)
Query: 27 YQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP--------- 74
YQS + QA+G N N+RVD+ L YPQRP+ + +G RP
Sbjct: 685 YQSA-MAKQALGLYALNYNLRVDSHGYLLHYPQRPIVQTRHLEEMGYNQRPSGQNFILAF 743
Query: 75 --------EDSLVMNQASLECGVFRSESYKAEV----------------------DNKDI 104
ED+++ N+ S++ G+ R+ ++ D+K
Sbjct: 744 MSFTGYNIEDAIIFNKTSIDMGLGRAHFFRVYASTENDYPGGLSDRITVPSPKLYDHKGD 803
Query: 105 QVKSRPSDDMLNFGKIQSKSGDIVIGKYAE---IGA------------DHSIKLKHTERG 149
Q + D + + + GD+++G+ + IG D S++L++ E G
Sbjct: 804 QYYIKLGPDGIVEPEAEVVGGDVLVGRESPPRFIGEERVIGPGVLSKRDTSVQLRYGESG 863
Query: 150 LVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEA 209
+V V ++ + V +R + LGDKF+S HGQKGV+G L
Sbjct: 864 VVDTVFITQTSERNKLVKVKVRD----LRIPELGDKFASRHGQKGVVGML---------- 909
Query: 210 ALGKGACDGLMSYATPFATS--TGGVITEQH----QSFVSQLLNCIGARNSGITFIFKHY 263
Y P+ T +I H + V QLL + A+ + + K+
Sbjct: 910 ---------FPRYDMPYTEDGITPDIIVNPHGIPSRMTVGQLLELVTAKAGAL--LGKYI 958
Query: 264 FLFCLFECPMDWIAFIC--------------------LVRSLIFTWITFYQQFIHMSEDK 303
++ ++ + + L+ + I I FYQ+ HM DK
Sbjct: 959 DGTPFYKEDINNLQLVLVKKGFDPNGKEVMYDGRTGRLIENTITIGIAFYQRLYHMVSDK 1018
Query: 304 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER------LKCKNV 357
+ R TG Q LT +P + R GG+ FGEM+ DCL+ +GA+ L +R L +V
Sbjct: 1019 MHARATGKVQLLTRQPTEGKARQGGLRFGEMERDCLVGYGATMMLRDRMLENSDLYVMHV 1078
Query: 358 ANVIQRVV-----GGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
N+ + G Y C I + DI VPY KL QE+ SMG+
Sbjct: 1079 CNLCGHIAWYNSKRGIYECPIHGDSGDIRPIKVPYAFKLFLQEI-ISMGV 1127
>gi|1621594|gb|AAC52850.1| second largest subunit of RNA polymerase I [Mus musculus]
Length = 1135
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 187/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL F+ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + +D L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGEDNLVFGVKPGDPR 802
Query: 120 IQSKSGD---IVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K D IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDDDGLPSIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F + I +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCICI--TVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1159
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 132/492 (26%), Positives = 197/492 (40%), Gaps = 142/492 (28%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 695 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELID 754
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRP-- 110
P ED+LV+N++SL+ G R + V +Q+K P
Sbjct: 755 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQV----VRKNTVQLKKYPNH 810
Query: 111 SDDMLN---------------------FGKIQSK---------------SGDIVIG---- 130
+ D+L+ G++ S+ SG+ +G
Sbjct: 811 TQDILSGMRVDENNNPIFPHQALGPDGLGEVGSRIHNGQVFANKCVPTNSGESALGGPQQ 870
Query: 131 --KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
+ + + K E + +V++S +D+ + V +RQ+ LGDKFSS
Sbjct: 871 DDRQMDRHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSS 926
Query: 189 MHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMS 221
HGQKGV G + Q T +++E GK G +G +
Sbjct: 927 RHGQKGVCGIIVQQEDMPFNDYGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLE 986
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFI 279
Y T F G + + + V + + G SGIT EC
Sbjct: 987 YGTCFG---GSKLEDMSKILVEKGFSYSGKDMLQSGITG-----------EC-------- 1024
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+
Sbjct: 1025 --LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1082
Query: 340 IAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
IA+GAS L ERL +V N + +C C S++++IK +PY AKLL Q
Sbjct: 1083 IAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNNWCTTCQSSENVIKMTIPYAAKLLFQ 1142
Query: 394 ELSFSMGITLKF 405
EL SM I +
Sbjct: 1143 EL-LSMNIAPRL 1153
>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
Length = 1137
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 199/501 (39%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YP P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 846
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E V +V++S+N + + +RQ+
Sbjct: 847 -PLQGQSAQV---PYTAV----PISYKGPEPSYVERVMVSANAEEDFLIKILLRQT---- 894
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV G + EQ T + LE
Sbjct: 895 RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 954
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 955 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 1001
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1002 APLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1052
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1053 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRLAYCSWCHFCQSSANVSKISM 1112
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1113 PYACKLLFQELT-SMNVVPKM 1132
>gi|302412759|ref|XP_003004212.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
VaMs.102]
gi|261356788|gb|EEY19216.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
VaMs.102]
Length = 1105
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 186/462 (40%), Gaps = 100/462 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL L YPQRP+
Sbjct: 683 ILGAVAGLIPFPHHNQSPRN--TYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739
Query: 64 W--------------------ILISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDNKD 103
+++S ED+L+ + V RS +A V
Sbjct: 740 ISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALLWILMAWPWSVARSGLGEAMVK--- 796
Query: 104 IQVKSRPSDDMLNFGKIQSKSGDIVIG--KYAEIGADHSIKLKHTERGLVLKVLLSSNDD 161
K P D +G IG + D SI + + + KV++S ++
Sbjct: 797 ---KETPLD-----------TGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEK 842
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ------------------- 201
V RQ+ LGDKFSS HGQKGV+G + EQ
Sbjct: 843 DNMVIKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPH 898
Query: 202 ------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 254
T +LLE GK + DG Y G +S+ L +
Sbjct: 899 GFPSRMTVGKLLECLTGKASVLDGRPDYGF------GDAFRSHPLKQMSEAL-----VDH 947
Query: 255 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 314
G ++ K YF + P++ + IF +YQ+ HM +DK+ R G
Sbjct: 948 GFSWEGKDYFTSGITGEPLE---------AYIFNGPIYYQRLKHMVQDKMHSRARGPRAI 998
Query: 315 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ-----RVVG-GP 368
LT +P R R GG+ GEM+ DCLIA+GAS L ERL + I + G
Sbjct: 999 LTRQPTEGRSREGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEIDICQQCGLFGYKG 1058
Query: 369 YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 409
YC C S ++ K +PY AKLL QEL S ++G+ L+ + +
Sbjct: 1059 YCHTCRSTKEVTKMTMPYAAKLLVQELISMNVGVRLQMEDEF 1100
>gi|71419186|ref|XP_811091.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain CL
Brener]
gi|70875716|gb|EAN89240.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
Length = 1130
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 132/469 (28%), Positives = 192/469 (40%), Gaps = 73/469 (15%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ GIIP + + +QS QA+G N IR DT+L YPQRPL
Sbjct: 672 LLGVVAGIIPFPHHNQSARN--TFQSAM-GKQALGTIAYNQYIRTDTVLMLGAYPQRPLC 728
Query: 64 WILISDC-----LGRP---------------EDSLVMNQASLE-----CGVFRSESYKAE 98
D LG ED+ V N+ SL+ C V R E
Sbjct: 729 RTKAMDLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLE 788
Query: 99 -VDNKDIQVKSRPSDDM-----LNFGKIQSKSG-----DIVIGKYAEIGA----DHSIKL 143
+ N + ++ P + LN I SK DI++ KY + + + +
Sbjct: 789 RLPNGEYEIILPPDSNAGKCKALNSDGIASKGAIVRQFDILVNKYTPVASLEPRPNPLVY 848
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 201
K+ + +V V++ D + V I+ V GDKFSS HGQKGV+G +
Sbjct: 849 KYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITD 908
Query: 202 TPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLNCIG---------A 251
KG ++ F + T G + E S VS L G A
Sbjct: 909 GVNMPFNE---KGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTAFGGDNA 965
Query: 252 RNSGITFI---FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
+ G+ + F ++ + I +++ +F +YQ+ HM DK+ R
Sbjct: 966 EDLGMHLLRNGFNYHGKDAFYSGITGEI-----MQAYVFFGPIYYQRLKHMVTDKMHARA 1020
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG 366
TG LT +P R R GG+ GEM+ DC++ +GAS L+ERL + + R G
Sbjct: 1021 TGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLLSSDLFTVDTCRSCG 1080
Query: 367 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
YC CN+ + + NVPY KLL QEL MGI+ + G
Sbjct: 1081 FLGYCGYCPYCNTKNTVSHVNVPYAFKLLLQELQ-GMGISTRLSLDFIG 1128
>gi|257076606|ref|ZP_05570967.1| DNA-directed RNA polymerase subunit B [Ferroplasma acidarmanus fer1]
Length = 1195
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 197/498 (39%), Gaps = 118/498 (23%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTL 51
S +LG+ +IP Y SP Q+IG P N IR DT
Sbjct: 718 SMILGVVASLIP-------------YPEHNSSPRITIASAMIKQSIGLPQANYRIRTDTR 764
Query: 52 LQQLFYPQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFR 91
L YPQ PL + D + +P +D+++MN+AS+E G+ R
Sbjct: 765 GHLLHYPQIPLVTTKVMDFIKYRRKPAGQNFVVAIVSYHGYNMQDAIIMNKASIERGLGR 824
Query: 92 S---ESYKAEVDNKDIQVKSR---PSDDMLN----------------FGKIQSKSGDIVI 129
S +Y AE + + PS D+L F + + + D+++
Sbjct: 825 SSFFRTYTAEERRYPGGQEDKFEIPSHDVLGARAEEYYKNLDENGIIFPESKVEGSDVLV 884
Query: 130 GKYA------EIGADH---------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 174
GK + E AD S+ ++ TE G V V L+ ++ V +R
Sbjct: 885 GKTSPPRFLEEENADKLGPLRRRESSVTVRPTESGYVDNVFLTVSESNSRIIKVKVRSD- 943
Query: 175 NMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYATPFATSTGG 232
GDKF+S HGQKGV+G++ AQ G L+ ++ P + G
Sbjct: 944 ---RIPQPGDKFASRHGQKGVIGYVA---AQEDMPFTEDGIIPDLLFNPHSVPSRMTLGH 997
Query: 233 VI--------TEQHQSFVSQLLNCIGARNSGITFIFKHY-FLFCLFECPMDWIAFICLVR 283
V+ T ++ S + + G + K Y F E D I
Sbjct: 998 VLEMMGAKVSTMSGENIDSTIFD--GEPERSLREQLKKYGFRESGNEVMYDGITGKKFEV 1055
Query: 284 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 343
IF + +YQ+ HM K R+ G Q LT +P R R GG+ FGEM+ D LIAHG
Sbjct: 1056 D-IFMGVIYYQKLHHMVASKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHG 1114
Query: 344 ASGNLHERLKCKNVANVIQRVVGGP---------------YCRICNSADDIIKANVPYGA 388
AS + +RL ++ ++ V G P C C + +I Y
Sbjct: 1115 ASMVIKDRLLDQSDGTILY-VCGNPTCGHIAIYDFRKGTLRCPACGNTGNIYPIETSYAF 1173
Query: 389 KLLSQELSFSMGITLKFD 406
KL+ ELS SMGI ++ +
Sbjct: 1174 KLMRDELS-SMGIVMRLE 1190
>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 194/486 (39%), Gaps = 127/486 (26%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + YQ QAIG N R+DTLL + YP P+
Sbjct: 667 LLGAVAGLIPYPHHNQSPRN--TYQCAM-GKQAIGAIAYNQLHRIDTLLYLMVYPHHPMV 723
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES---- 94
+ +G ED+L++N+ASL+ C VFR +
Sbjct: 724 RTKTIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIK 783
Query: 95 ------YKAEVD---NKDIQV--KSRPSDD--MLNFGKIQSKSGDIVIGKYAEIGA-DHS 140
Y D + D Q+ K +P D+ + + G ++ SG++ + K A D+S
Sbjct: 784 RYPNGTYDRIADPPRDTDGQILEKWKPCDEGGVADVG-MKVFSGNVYVNKQTPSNANDNS 842
Query: 141 I-----------KLKHTERGLVL----KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+ T RG + KVL++ + + V +RQ+ LGDK
Sbjct: 843 VAGGAATVTAWNNTPMTYRGTIPSYIDKVLVTDTESDQTLVKVLLRQT----RRPELGDK 898
Query: 186 FSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDG 218
FSS HGQKGV G + Q T ++LE GK G G
Sbjct: 899 FSSRHGQKGVCGLIVQQEDMPFNDHGSCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLRG 958
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITF-IFKHYFLFCLFECPMDW 275
+ Y T F G E + + + +G SGIT +HY
Sbjct: 959 TVEYGTAFG---GSKAVEMSKILIEHGYSYLGKDYLTSGITGQALEHY------------ 1003
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
+F +YQ+ HM DK+ R G LT +P R R GG+ GEM+
Sbjct: 1004 ----------VFMGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1053
Query: 336 CDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAK 389
DCLIAHGAS L ERL + A +V Q +G +C C + + K +PY K
Sbjct: 1054 RDCLIAHGASQLLLERLMISSDAFELDVCQDCGFMGYSGWCVRCKNGKSVTKITIPYACK 1113
Query: 390 LLSQEL 395
LL QEL
Sbjct: 1114 LLFQEL 1119
>gi|19074837|ref|NP_586343.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
gi|19069562|emb|CAD25947.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1110
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 178/421 (42%), Gaps = 70/421 (16%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRPE------------------- 75
QAIG + N R D+++ QL Y RP+ I D + E
Sbjct: 699 QAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDI 758
Query: 76 -DSLVMNQASLECGVFRSESYKAEV-------DNKDIQVKSRPSDDMLN---FGK--IQS 122
D+LV+N+ S+E G+FR E YK + + P + +L+ GK
Sbjct: 759 EDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGMSDVLWPNPKESVLDEDGLGKPGKMV 818
Query: 123 KSGDIVIGKYAEIGADHSI--KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
+ G + + K + + + K+ + + K+L++ + D V I+ +
Sbjct: 819 RDGTVYVNKMSPVDGTYKFTGKVHRGDPAYIDKILITKSQDQ-----VLIKTMLRQTRVP 873
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGV---IT 235
+GDKFSS HGQKGV+G L Q + + D +M+ + P + G + I+
Sbjct: 874 EIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGI---VPDIIMNPHGFPSRMTVGKIVELIS 930
Query: 236 EQHQSFVSQLLNCIGARNSGIT----FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
+ Q+L+ + + + + KH F + +C L + IF
Sbjct: 931 GKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLA-AYIFFGPV 989
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
FYQ+ HM DK+ R G LT +P R + GG++ GEM+ DCLI +GAS + ER
Sbjct: 990 FYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITER 1049
Query: 352 LKCKNVANVIQRVVGGPYCRICN-----------SADDIIKANVPYGAKLLSQELSFSMG 400
L ++V + V CR C +K +PY KLL QEL SM
Sbjct: 1050 LMTS--SDVFEAYV----CRSCGVLAFKGCCVACKGTKPVKVKMPYACKLLFQEL-MSMN 1102
Query: 401 I 401
I
Sbjct: 1103 I 1103
>gi|407844014|gb|EKG01762.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
Length = 1130
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/469 (28%), Positives = 192/469 (40%), Gaps = 73/469 (15%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ GIIP + + +QS QA+G N IR DT+L YPQRPL
Sbjct: 672 LLGVVAGIIPFPHHNQSARNT--FQSAM-GKQALGTIAYNQYIRTDTVLMVGAYPQRPLC 728
Query: 64 WILISDC-----LGRP---------------EDSLVMNQASLE-----CGVFRSESYKAE 98
D LG ED+ V N+ SL+ C V R E
Sbjct: 729 RTKAMDLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLE 788
Query: 99 -VDNKDIQVKSRPSDDM-----LNFGKIQSKSG-----DIVIGKYAEIGA----DHSIKL 143
+ N + ++ P + LN I SK DI++ KY + + + +
Sbjct: 789 RLPNGEYEIILPPDSNAGKCKALNSDGIASKGAIVRQFDILVNKYTPVASLEPRPNPLVY 848
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 201
K+ + +V V++ D + V I+ V GDKFSS HGQKGV+G +
Sbjct: 849 KYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITD 908
Query: 202 TPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLNCIG---------A 251
KG ++ F + T G + E S VS L G A
Sbjct: 909 GVNMPFNE---KGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTAFGGDNA 965
Query: 252 RNSGITFI---FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
+ G+ + F ++ + I +++ +F +YQ+ HM DK+ R
Sbjct: 966 EDLGMHLLRNGFNYHGKDVFYSGITGEI-----MQAYVFFGPIYYQRLKHMVTDKMHARA 1020
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG 366
TG LT +P R R GG+ GEM+ DC++ +GAS L+ERL + + R G
Sbjct: 1021 TGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLLSSDLFTVDTCRSCG 1080
Query: 367 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
YC CN+ + + NVPY KLL QEL MGI+ + G
Sbjct: 1081 FLGYCGYCPYCNTKNTVSHVNVPYAFKLLLQELQ-GMGISTRLSLDFIG 1128
>gi|112382383|gb|ABI17423.1| RNA polymerase II second largest subunit, partial [Sympodiomycopsis
paphiopedili]
Length = 746
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 172/417 (41%), Gaps = 117/417 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
+ +LG+ IIP H Q+ YQS QA+G TN +R+DT+ L+YPQ
Sbjct: 361 AMILGVCASIIPFPDHNQSPRNT----YQSAM-GKQAMGVYLTNYQMRMDTMANILYYPQ 415
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+PL + L EDS++MNQ+S++ G+FRS Y+
Sbjct: 416 KPLATTRAMEHLNFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYT 475
Query: 100 D---------NKDIQVKSRPSDDMLNFG---KIQSK---------SG-DIVIGKYA---- 133
D ++ + +R L G KI + SG DI+IGK A
Sbjct: 476 DFEKKVGFTLQEEFEKPTREXSIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPP 535
Query: 134 ---EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
E+G D S LK TE G+V +VL+S+N +G F V +R +
Sbjct: 536 DSEELGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRST----RVPQT 591
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC 216
GDKF+S HGQKG +G E P L+E L K A
Sbjct: 592 GDKFASRHGQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAT 651
Query: 217 -DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T+ VS +L +G + G+ ++ + L
Sbjct: 652 LSGQEGDATPF--------TDLTVEAVSSILAKLGYQKRGLEVMYNGHTGRKL------- 696
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FG
Sbjct: 697 -------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFG 746
>gi|55728623|emb|CAH91052.1| hypothetical protein [Pongo abelii]
Length = 1135
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G +YK+E + D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSAYKSEFIDLSEKIKQGDSSLVFGMKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKACSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHGATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|207457737|ref|NP_001128800.1| DNA-directed RNA polymerase I subunit RPA2 [Pongo abelii]
Length = 1135
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1115
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 129/490 (26%), Positives = 209/490 (42%), Gaps = 127/490 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQ--LFYPQRP 61
+LG IIP + + Y+S + Q++GF T P + T ++Q + YPQ P
Sbjct: 640 ILGAGASIIPYPEHNQSPRN--TYESA-MAKQSLGFST--PMMNTSTYVRQHLMLYPQTP 694
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
+ LG RP ED++V++++S++ G+ R+ Y AE
Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSRSSVDRGLGRTFFFRIYDAE 754
Query: 99 -------------VDNKDIQVKSRPSDDMLNF----GKIQSKS----GDIVIGK------ 131
+ N + ++ + G + S+S GDI+IGK
Sbjct: 755 AKQYPGGMRDAFEIPNAEDNIRGYKGEKAYRLLEEDGVVASESPVHGGDILIGKTSPPRF 814
Query: 132 ---YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
Y E + D SI ++ +E G+V V+++ +++G + +R + +
Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRD----MRIPEI 870
Query: 183 GDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSF 241
GDKF+S HGQKGVLG L + A+ L + D L++ +A P + G + +S
Sbjct: 871 GDKFASRHGQKGVLGILAK--AEDLPYTADGISPDVLINPHAFPSRMTVGMFM----ESI 924
Query: 242 VSQLLNCIGARNSGITFI---------------FKHYFLFCLFEC------PMDWIAFIC 280
+ G++ G F+ FK+ +++ P+D
Sbjct: 925 CGKAAALRGSQFDGSAFVGEKMDEVKPVMDAAGFKYSGKETMYDGRTGKSFPVD------ 978
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DCLI
Sbjct: 979 -----VFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLI 1033
Query: 341 AHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIKANVP 385
A+GAS L +RL +C VA +V QR CR+C + +V
Sbjct: 1034 AYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---ICRVCGDKAKVSSVSVA 1090
Query: 386 YGAKLLSQEL 395
Y KLL QE+
Sbjct: 1091 YAFKLLLQEM 1100
>gi|56694346|gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus brevifolia]
Length = 549
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 161/404 (39%), Gaps = 111/404 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 175 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 231
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 232 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 291
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 292 EKRMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE 351
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 352 AGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRS----VRIPQIGDKF 407
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 408 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 467
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 468 EGDATPFTDVTVDSI--------SKALHKCGYQMRGFETMYNGHTGRKL----------- 508
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 509 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 549
>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
Length = 1443
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 128/485 (26%), Positives = 196/485 (40%), Gaps = 118/485 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DT+L + YPQ P+
Sbjct: 982 ILGAVAGLIPYPHHNQSPRN--TYQCAM-GKQAIGAIAYNQFSRIDTILYLMVYPQEPMV 1038
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDNKD 103
I ++ P ED+L++N+AS + G R + K +
Sbjct: 1039 KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKV--SHQ 1096
Query: 104 IQVKSRPSDDMLNFGKIQ-SKSGDIVIGK--YAEIGA----------------------- 137
++ + + D +N G ++ IG+ A++GA
Sbjct: 1097 LKSYANGTSDRINAGALKVDDPTHQAIGQDGIAQVGARINQGDAFLLKAIPQDTAGPPST 1156
Query: 138 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
D K K + + KV ++ N+ G + RQ+ LGDKFSS HGQKG
Sbjct: 1157 TYKDKPEKYKLPDCSYIDKVCITENEAGTTLIKILNRQT----RRPELGDKFSSRHGQKG 1212
Query: 195 VLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFA 227
G + Q T +++E GK G +G + Y T F
Sbjct: 1213 TTGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFG 1272
Query: 228 TSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 285
G + + VS+ + G SGIT ++ F
Sbjct: 1273 ---GSRVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTF------------------- 1310
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
F I +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS
Sbjct: 1311 -FGPI-YYQKLKHMVQDKMHARARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGAS 1368
Query: 346 GNLHERLKCKNVANVIQ------RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFS 398
L ERL + A+ + ++ YC++C S + + +PY AKLL QEL S +
Sbjct: 1369 QLLLERLMISSDAHNVDVCEKCGQMGYSGYCKLCESEKAVRRITMPYAAKLLIQELGSMN 1428
Query: 399 MGITL 403
+ +T+
Sbjct: 1429 VKVTI 1433
>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
99-880]
Length = 1146
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 196/492 (39%), Gaps = 120/492 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + K + AIG+ N R++TL+ + YPQ+P+
Sbjct: 679 ILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLN---RIETLIYLMVYPQQPMV 735
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRS-----E 93
+ +G ED+LV+N++ L+ C V R +
Sbjct: 736 KSKTIELIGYDKLPAGQNATVAVMSYSGYDIEDALVLNKSGLDRGFGRCQVMRKYATMVK 795
Query: 94 SYKAEVDNKDIQVKSRPSD------DMLNFGKIQS-----KSGDIVIGKYAEI------- 135
Y ++ SR S+ D + I ++G I I K +
Sbjct: 796 RYPNGTHDRLADPPSRESELWNESYDAIEADGIAGVGEPVEAGSIYINKQTPVSTGVDAG 855
Query: 136 --GADHSI-------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
GA ++ + K + G + KVL ++ + + V+IRQ+ LGDKF
Sbjct: 856 VPGAAQTVAYKPAPMRYKSPQTGYIDKVLFTTTESDQTLIKVNIRQT----RRPELGDKF 911
Query: 187 SSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGL 219
SS HGQKGV G + Q T +++E GK G DG
Sbjct: 912 SSRHGQKGVCGIIVQQEDMPFSDLGVCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLDGS 971
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
+ Y T F GG E +S++L N G + K Y + P+
Sbjct: 972 LQYGTAF----GGSKVED----MSRILI-----NHGFNYSGKDYVTSGITGEPLS----- 1013
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
+ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ D L
Sbjct: 1014 ----AYIFFGPIYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDAL 1069
Query: 340 IAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
I +GAS L ERL +V N + +C+ C S+ + +PY AKLL Q
Sbjct: 1070 IGYGASMLLLERLMVSSDIFEVHVCNECGFIGYSGWCQFCKSSKFMKAMKIPYAAKLLFQ 1129
Query: 394 ELSFSMGITLKF 405
EL +M I+ +
Sbjct: 1130 EL-LAMNISPRL 1140
>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
Length = 1165
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 129/489 (26%), Positives = 190/489 (38%), Gaps = 133/489 (27%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG N R+DTLL + YPQ+P+ I + D
Sbjct: 698 GLIPYPHHNQSPRNTYQCAMGKQAIGVIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 757
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEV--------DNKDI 104
P ED+LV+N++S++ G R + + KD+
Sbjct: 758 YDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTITLKRYPNHTKDL 817
Query: 105 QVKSRPSD-------------DMLNFGKIQSKSGDIVIGKYAEIGADHSIK--------- 142
R + D L ++ ++G + + K A S+
Sbjct: 818 VSGMRVDENGEPIFPHAALGPDGLGEVGMKVENGQVYVNKCVPNNAGESVLGSNDQQHNQ 877
Query: 143 -------------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
K E V +V++S +D+ + V +RQ+ LGDKFSS
Sbjct: 878 QQTAESHREVPAFYKAPEPAYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSR 933
Query: 190 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 222
HGQKGV G + Q T +++E GK G +G + Y
Sbjct: 934 HGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEY 993
Query: 223 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 282
T F G + E ++ V + G SG ++ CL
Sbjct: 994 GTCFG---GSKLEEMSRTLVDK-----GFSYSGKDMLYSGITGECL-------------- 1031
Query: 283 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAH 342
++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+
Sbjct: 1032 QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAY 1091
Query: 343 GASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELS 396
GAS L ERL ++ N + +C C S++ IIK +PY AKLL QEL
Sbjct: 1092 GASQLLLERLMLSSDAFEVDICNQCGLMGYNSWCTSCKSSEYIIKMTIPYAAKLLFQEL- 1150
Query: 397 FSMGITLKF 405
SM I +
Sbjct: 1151 LSMNIAPRL 1159
>gi|407405022|gb|EKF30242.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1128
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/469 (28%), Positives = 192/469 (40%), Gaps = 73/469 (15%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ GIIP + + +QS QA+G N IR DT+L YPQRPL
Sbjct: 672 LLGVVAGIIPFPHHNQSARNT--FQSAM-GKQALGTIAYNQYIRTDTVLMLGAYPQRPLC 728
Query: 64 WILISDC-----LGRP---------------EDSLVMNQASLE-----CGVFRSESYKAE 98
D LG ED+ V N+ SL+ C V R E
Sbjct: 729 RTKAMDLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLE 788
Query: 99 -VDNKDIQVKSRPSDDM-----LNFGKIQSKSG-----DIVIGKYAEIGA----DHSIKL 143
+ N + ++ P + LN I SK DI++ KY + + + +
Sbjct: 789 RLPNGEYEIILPPDSNAGKCKALNSDGIASKGAIVRQFDILVNKYTPVASLEPRPNPLVY 848
Query: 144 KHTERGLVLKVLLSSNDDGKNFAVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 201
K+ + +V V++ D + V I+ V GDKFSS HGQKGV+G +
Sbjct: 849 KYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITD 908
Query: 202 TPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLNCIG---------A 251
KG ++ F + T G + E S VS L G A
Sbjct: 909 GVNMPFNE---KGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTAFGGENA 965
Query: 252 RNSGITFI---FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
+ G+ + F ++ + I +++ +F +YQ+ HM DK+ R
Sbjct: 966 DDLGMQLLRNGFNYHGKDVFYSGITGEI-----MQAYVFFGPIYYQRLKHMVTDKMHARA 1020
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG 366
TG LT +P R R GG+ GEM+ DC++ +GAS L+ERL + + R G
Sbjct: 1021 TGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLLSSDLFTVDTCRSCG 1080
Query: 367 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 411
YC CN+ + + NVPY KLL QEL MGI+ + G
Sbjct: 1081 FLGYCGYCPYCNTKNTVSHVNVPYAFKLLLQELQ-GMGISTRLSLDFIG 1128
>gi|109104775|ref|XP_001114787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
[Macaca mulatta]
Length = 449
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 121/464 (26%), Positives = 186/464 (40%), Gaps = 116/464 (25%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP------------- 74
Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 8 QTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDM 67
Query: 75 EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLN 116
ED++++N+AS E G YK+E + D ++ + DD L
Sbjct: 68 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQKLDDDGLP 127
Query: 117 FGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQS 173
F + + GD Y + S + K E +V + + SND G F V I +
Sbjct: 128 FIGAKLQYGDPYY-SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--T 184
Query: 174 VNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLL 207
+ + + +GDKF+S HGQKG+L L E P L+
Sbjct: 185 MRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLI 244
Query: 208 EAALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYF 264
E+ GK A GL ATPF + +E++ + + ++L G G + Y
Sbjct: 245 ESMAGKSAALHGLCHDATPF------IFSEENSALEYFGEMLKAAGYNFYGTE---RLYS 295
Query: 265 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 324
E D IF + +YQ+ HM DK + R TG+ +T +P+ R
Sbjct: 296 GISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRN 344
Query: 325 RFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------ 368
GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 345 VQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSA 404
Query: 369 ------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 405 MRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 447
>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
Length = 1169
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 184/465 (39%), Gaps = 129/465 (27%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
QA+G N IR+D+ L YPQ P+ + D +G RP
Sbjct: 712 QALGVYALNYRIRLDSHSYLLQYPQVPIVQTRMLDIMGYNERPAGQNMVVAIMSYTGYNI 771
Query: 75 EDSLVMNQASLECGVFRSESYKAE--VDN------KDIQVKSRPSD-------------- 112
ED+L+ N+ S++ G+ R+ ++ ++N +D +P +
Sbjct: 772 EDALIFNKGSIDMGLARAYFFRVYTGIENEYPGGERDRITLPKPDEVYDYRGAAAYAKLE 831
Query: 113 -DMLNFGKIQSKSGDIVIGKYAE---IGA------------DHSIKLKHTERGLVLKVLL 156
D + + + + G+I+IG+ + +G D SI ++ E+G+V V++
Sbjct: 832 ADGIVAPETEVEGGEILIGRVSPPRFLGEGRVISMATVRRRDTSIPMRLGEKGVVDMVVI 891
Query: 157 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------- 199
S+ + V +R + +GDKF+S HGQKGV+G +
Sbjct: 892 STTVERNKLVKVRVRN----LRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDV 947
Query: 200 ---------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 249
T QLLE GK GA G ATPF E +LL
Sbjct: 948 ILNPHAIPSRMTVGQLLEEIAGKLGAIKGRFVDATPF-------FKEDIDGLRIELLK-- 998
Query: 250 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 309
+ + + E P I + +YQ+ HM DK+ R T
Sbjct: 999 EGYDPNAREVMYDGRTGQIIEAP-------------ITIGVAYYQRLYHMVADKIHARAT 1045
Query: 310 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKN 356
G LT +P + R GG+ FGEM+ DCL+ HGAS L +R+ C N
Sbjct: 1046 GRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGASMLLRDRMLDNSDAYVMYVCNTCGN 1105
Query: 357 VA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
+A N ++V+ C I DI VPY KLL QE++ M
Sbjct: 1106 IAWFNRRKKVL---ECPIHGEEGDIRPVKVPYAFKLLLQEITSMM 1147
>gi|56694348|gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata]
Length = 550
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 160/404 (39%), Gaps = 111/404 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 176 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 232
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 233 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 292
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 293 EKRMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDD 352
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 353 SGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRS----VRIPQIGDKF 408
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 409 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 468
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 469 EGDATPFTDVTVDSI--------SKALHKCGYQMRGFETMYNGHTGRKL----------- 509
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 510 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 550
>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
Length = 1137
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/492 (25%), Positives = 190/492 (38%), Gaps = 120/492 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YPQ P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KTKTIELTNFDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSKS----------GDIVIGKYAEIGADHS------- 140
N+ P D L I G+ ++ K I +
Sbjct: 788 RYANQTFDRIMGPVKDALTNKVIFKHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNP 847
Query: 141 --------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
I K E V +V++S+N + + +RQ+ +GDKF
Sbjct: 848 LEGQSTQVPYTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQT----RIPEIGDKF 903
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGL 219
SS HGQKGV G + T + LE GK G +G
Sbjct: 904 SSRHGQKGVTGLIVDQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGK 963
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
Y T F S G I + + G ++ K +F + P+
Sbjct: 964 FHYGTAFGGSKVGDIQAELE-------------RHGFNYMGKDFFYSGITGAPL------ 1004
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++ I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCL
Sbjct: 1005 ---QAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCL 1061
Query: 340 IAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
I++GAS + ERL +V R+ +C C S+ + K ++PY KLL Q
Sbjct: 1062 ISYGASMLIMERLMISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQ 1121
Query: 394 ELSFSMGITLKF 405
EL+ SM + K
Sbjct: 1122 ELT-SMNVVPKM 1132
>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
polymerase III subunit C2; AltName: Full=DNA-directed RNA
polymerase III 128 kDa polypeptide; Short=C128
gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
Length = 1137
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 199/501 (39%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YP P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 846
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E + +V++S+N + + +RQ+
Sbjct: 847 -PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMVSANAEEDFLIKILLRQT---- 894
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV G + EQ T + LE
Sbjct: 895 RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 954
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 955 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 1001
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1002 TPLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1052
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1053 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISM 1112
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1113 PYACKLLFQELT-SMNVVPKM 1132
>gi|431913096|gb|ELK14846.1| DNA-directed RNA polymerase I subunit RPA2 [Pteropus alecto]
Length = 1105
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/472 (27%), Positives = 186/472 (39%), Gaps = 115/472 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 656 MYQCQM-GKQTMGFPLLTYRDRSDNKLYRLQTPQSPLVRPRMYDHYDMDNYPIGTNAIVA 714
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------- 118
ED++V+N+AS E G YK+E D+ K + DD L FG
Sbjct: 715 VISYTGYDMEDAMVVNKASWERGFAHGSVYKSEF--IDLTEKVKQGDDSLVFGVKPGDPR 772
Query: 119 ---KIQS----------KSGDIVIGKYAEIGADHSIKLKHT-ERGLVLKVLLSSNDDGK- 163
K+ S + GD + D ++ L + E +V + + SND G
Sbjct: 773 TAQKLDSDGLPFVGAWLRYGDPYFSYVSLHSGDGAVVLYTSKESCIVDNIKVCSNDAGTG 832
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V I +V + + +GDKF+S HGQKG+L L E P
Sbjct: 833 KFKCVCI--TVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGF 890
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S + S + + + A
Sbjct: 891 PSRMTIGMLIESMAGKSAALHGLCQDATPFTFS-------EENSALGHFGDMLKAAGYAF 943
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ T
Sbjct: 944 YGTERLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRAT 992
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KC--KNVANVIQR-------VVG 366
+PV R GGI FGEM+ D L+AHG S LH+RL C ++VA+V R ++
Sbjct: 993 NQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVRCGSLLSPLLE 1052
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1053 KPPPAWSAMRNRKYSCTVCQRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1103
>gi|83415503|gb|ABC17959.1| RNA polymerase II second largest subunit, partial [Rhizophagus
intraradices]
Length = 764
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 166/416 (39%), Gaps = 117/416 (28%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 380 SMILGICASIIPFPDHNQSPRN----TYQS-AMGKQAMGIYVTNHQLRMDTLANILYYPQ 434
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEV 99
+P+ + L EDS++MNQ+S++ G+FRS Y++ +
Sbjct: 435 KPVVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYM 494
Query: 100 DNKD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG- 136
D + I+ +P+ DD L + DI+IGK I
Sbjct: 495 DQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEDDGLIAPGTRVSGDDIIIGKVTPISN 554
Query: 137 --------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V +V++++N +G F V +R + +
Sbjct: 555 ETLELGQRQTTHTQRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRST----RVPQM 610
Query: 183 GDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GA 215
GDKF+S HGQKG +G E P L+E LGK
Sbjct: 611 GDKFASRHGQKGTIGITYRQEDMPFTAEGIAPDLVINPHAIPSRMTIGHLVECLLGKVST 670
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF T I SQ L G ++ G ++ + L
Sbjct: 671 LTGQEGDATPFTDVTVEAI--------SQSLRLQGYQSRGFEVMYNGHTGRKLA------ 716
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 717 --------AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 764
>gi|449544049|gb|EMD35023.1| hypothetical protein CERSUDRAFT_116535 [Ceriporiopsis subvermispora
B]
Length = 1145
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/484 (25%), Positives = 187/484 (38%), Gaps = 124/484 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + K + AIG+ N R+DTLL YPQ+P+
Sbjct: 680 LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLN---RIDTLLYLSVYPQQPMV 736
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES--YK 96
+ +G ED+L+ N+ASL+ C V R + +
Sbjct: 737 KTKTIELIGYDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNTTLIR 796
Query: 97 AEVDNKDIQVKSRPSDDMLNFGKIQSK-----------------SGDIVIGKYAEIGADH 139
+ ++ P+DD G+IQ K GD+ I K A+
Sbjct: 797 KYPNGTFDRLADAPADDN---GQIQKKYDIIQLDGLAGVGERVDPGDVYINKQTPTNAND 853
Query: 140 S---------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
+ + K G + KV+++ ++ + V IRQ+ LGD
Sbjct: 854 NSFTGQAATVPYKNAPMTYKSPVAGYIDKVMITDTENDQTLIKVLIRQT----RRPELGD 909
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKGV G + T +++E GK G
Sbjct: 910 KFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLA 969
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + Y T F GG E + + +G ++ K + PM+
Sbjct: 970 GKLQYGTAF----GGSKVEDMSRILIE---------NGFSYSGKDMLTSGITGEPMEAYV 1016
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +YQ+ HM DK+ R G LT +P R R GG+ GEM+ D
Sbjct: 1017 YFGPI---------YYQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERD 1067
Query: 338 CLIAHGASGNLHERLKC---KNVANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLL 391
CLI +GA+ L ERL K N + ++G +C C S+ + + +PY AKLL
Sbjct: 1068 CLIGYGATQLLLERLMISSDKFEVNACEECGLLGYNGWCTYCKSSKKMAQLTIPYAAKLL 1127
Query: 392 SQEL 395
QEL
Sbjct: 1128 FQEL 1131
>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
Length = 1137
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/492 (25%), Positives = 190/492 (38%), Gaps = 120/492 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YPQ P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KTKTIELTNFDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSKS----------GDIVIGKYAEIGADHS------- 140
N+ P D L I G+ ++ K I +
Sbjct: 788 RYANQTFDRIMGPVKDALTNKVIFKHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNP 847
Query: 141 --------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
I K E V +V++S+N + + +RQ+ +GDKF
Sbjct: 848 LEGQSTQVPYTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQT----RIPEIGDKF 903
Query: 187 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGL 219
SS HGQKGV G + T + LE GK G +G
Sbjct: 904 SSRHGQKGVTGLIVDQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGK 963
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
Y T F S G I + + G ++ K +F + P+
Sbjct: 964 FHYGTAFGGSKVGDIQAELE-------------RHGFNYMGKDFFYSGITGAPL------ 1004
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++ I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCL
Sbjct: 1005 ---QAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCL 1061
Query: 340 IAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
I++GAS + ERL +V R+ +C C S+ + K ++PY KLL Q
Sbjct: 1062 ISYGASMLIMERLMISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQ 1121
Query: 394 ELSFSMGITLKF 405
EL+ SM + K
Sbjct: 1122 ELT-SMNVVPKM 1132
>gi|221039778|dbj|BAH11652.1| unnamed protein product [Homo sapiens]
Length = 996
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 547 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 605
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 606 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 665
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 666 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 724
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 725 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 782
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 783 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 838
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 839 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 884
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 885 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 944
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 945 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 995
>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
Length = 1137
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 199/501 (39%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YP P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 846
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E + +V++S+N + + +RQ+
Sbjct: 847 -PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMVSANAEEDFLIKILLRQT---- 894
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV G + EQ T + LE
Sbjct: 895 RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 954
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 955 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 1001
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1002 SPLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1052
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1053 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISM 1112
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1113 PYACKLLFQELT-SMNVVPKM 1132
>gi|298712018|emb|CBJ32957.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 451
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 184/466 (39%), Gaps = 115/466 (24%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCL-------GRP------------- 74
A+G N + R+D LL L +PQ+P+ + D + G+
Sbjct: 7 HAMGTTALNMHERMDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDI 66
Query: 75 EDSLVMNQASLE-----CGVFR-----------------------SESYKAEVDNKDIQV 106
ED++V+N+ SL+ C VFR SE + E D + +
Sbjct: 67 EDAIVLNRGSLDRGFGRCMVFRKHQAPIRKYPNGTQDKIVGKVRASEFPRGEDDPRWPRY 126
Query: 107 KSRPSDDMLNFGKIQSKSGDIVIGKYAEIG-----------ADHSIKLKHTERGLVLKVL 155
K+ D + G + G I++ K++ A + K V KV+
Sbjct: 127 KALDEDGICRVGA-RLDPGTIMVNKHSPASTSGSGPVSSDFASTPLSYKAPAESYVDKVV 185
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---------------- 199
L++N++ + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 186 LTANENEDYLIKILLRQT----RRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPD 241
Query: 200 ----------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 248
T +++E GK G G +Y T F E+H S L C
Sbjct: 242 LIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFG--------EEHGSADRVHLCC 293
Query: 249 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 308
G +++ K P+ + IF FYQ+ HM DK+ R
Sbjct: 294 QALVERGYSYVGKDMLTSGTGGEPL---------MNYIFAGPVFYQKLKHMVMDKMHARA 344
Query: 309 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VANVIQ--R 363
G LT +P R R GG+ GEM+ DCLI +GAS + ERL + ANV Q
Sbjct: 345 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCG 404
Query: 364 VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
++G +C+ C S + + +PY KLL QEL SM I + Q
Sbjct: 405 LLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQ-SMNIVPRLKLQ 449
>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
Length = 721
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 171/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN IR+DT+ L+YPQ+P
Sbjct: 337 SMILGICASIIPFPDHNQSPRN--TYQSAM-GKQAMGIFLTNFLIRMDTMANILYYPQKP 393
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 394 LATTRSMEYLKFRELPAGQNAIVAILCYSGHNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 453
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 454 EKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVLGEDIIIGKTAPIPPDS 513
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F + +R + +GD
Sbjct: 514 EELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGRKFVKIRVRST----RIPQIGD 569
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 570 KFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLI 629
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ +F + L
Sbjct: 630 GNEGDATPF--------TDLTVESVSTFLRDRGYQSRGLEVMFHGHTGRKL--------- 672
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++ ++ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 673 -----QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721
>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
Length = 938
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 168/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN + R+DT+ L+YPQ+P
Sbjct: 554 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFDQRMDTMANILYYPQKP 610
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 611 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQ 670
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
E ++ N +++K + DD L ++ DI+IGK A I D+
Sbjct: 671 EKRIGMNVVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDN 730
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 731 EELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT----KVPQIGD 786
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 787 KFASRHGQKGTIGITYKQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVASLS 846
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 847 GYEGDATPFTDVT--------VDNVSKLLREHGYQSRGFEIMYHGHTGRKLT-------- 890
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 891 ------AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938
>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
Length = 1146
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 199/501 (39%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YP P+
Sbjct: 680 LLGVCAGLVPYPHHNQSPRN--TYQCA-MGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 736
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 737 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 796
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 797 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 855
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E + +V++S+N + + +RQ+
Sbjct: 856 -PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMVSANAEEDFLIKILLRQT---- 903
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV G + EQ T + LE
Sbjct: 904 RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 963
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 964 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 1010
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1011 TPLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1061
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1062 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISM 1121
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1122 PYACKLLFQELT-SMNVVPKM 1141
>gi|212286172|ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens]
gi|119593996|gb|EAW73590.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_a [Homo
sapiens]
Length = 1079
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|361131372|gb|EHL03070.1| putative DNA-directed RNA polymerase III subunit RPC2 [Glarea
lozoyensis 74030]
Length = 1184
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 129/485 (26%), Positives = 194/485 (40%), Gaps = 130/485 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPL-----FWILI 67
G + Y SP QAIG N R+DTLL + YPQ+P+ ++
Sbjct: 718 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKSRTIELIK 777
Query: 68 SDCLGRP---------------EDSLVMNQASLE-----CGVFRSESYK----------- 96
D L ED+LV+N+AS + C VFR + +
Sbjct: 778 YDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYATQFRKYPNRTQDR 837
Query: 97 ---AEVDNKDIQVKSRP-----SDDMLNFGKIQSKSGDIVIGKY-----------AEIGA 137
++D +D S+ SD M G+ Q SG+ + K +++G
Sbjct: 838 IGDKQMDERDPSKPSKKHAILGSDGMALVGE-QVNSGETYLNKEVPINTGGNGIGSDVGT 896
Query: 138 DHSIKLKHTER----GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
+ T R + K+++S ++ V RQ+ LGDKFSS HGQK
Sbjct: 897 NEHKPAPMTYRLPDPSYIDKIMISQTENETMVIKVQTRQT----RRPELGDKFSSRHGQK 952
Query: 194 GVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPF 226
GV+G + T ++LE GK G +G + Y T F
Sbjct: 953 GVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVLNGSLEYGTAF 1012
Query: 227 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 286
S ++ +G + K+ F + + I L +
Sbjct: 1013 GGSN---------------VDDMG------DILIKNGFSYSGKDFVTSGITGESLPAYIF 1051
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F I +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS
Sbjct: 1052 FGPI-YYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQ 1110
Query: 347 NLHERLKCKNVANVIQ--RVVG----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMG 400
L ERL + A+ + V G +C+ C S + + +PY AKLL QEL SM
Sbjct: 1111 LLLERLMLSSDAHEVDICEVCGMMGFQGWCQTCKSTAGVTRMTMPYAAKLLVQEL-LSMN 1169
Query: 401 ITLKF 405
+ ++
Sbjct: 1170 VLVRL 1174
>gi|449515913|ref|XP_004164992.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 719
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 179/414 (43%), Gaps = 91/414 (21%)
Query: 75 EDSLVMNQASLECGVFRSESYKAE-VDNKDIQVKSRPSDDMLNFGKIQSKSGDIV----- 128
ED++++N++S+E G+F + Y+ E +D D +S S M I + I+
Sbjct: 315 EDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGL 374
Query: 129 --IGK-----------YAEI-GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 174
+G+ Y E+ G ++KLK +E +V V + + N V+IR
Sbjct: 375 PYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKN-NPQKVNIR--F 431
Query: 175 NMVHSACLGDKFSSMHGQKGVLGFL---------------------------EQTPAQLL 207
+ +GDKFSS HGQKGV L T A L+
Sbjct: 432 RRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLM 491
Query: 208 EAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 266
E+ KG C +G ATPF +S ++ L++ +G+ + I F ++ L
Sbjct: 492 ESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGS--TLIKKGFNYHGLE 549
Query: 267 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 326
L+ + + IF +YQ+ HM DK + R+TG+ +T +P+ RK+
Sbjct: 550 VLYSG-----VYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKG 604
Query: 327 GGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANV-------------------IQRV 364
GGI FGEM+ D ++AHGAS LH+RL ++A+V ++ +
Sbjct: 605 GGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREI 664
Query: 365 VGGP--------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 410
G P C C ++ + +PY K L+ EL+ + +K QLS
Sbjct: 665 GGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELA---AMNIKMTLQLS 715
>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
Length = 1139
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 136/495 (27%), Positives = 199/495 (40%), Gaps = 118/495 (23%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + YQ QA+G N R+D+LL L YPQRPL
Sbjct: 665 ILGVCAGLIPFPHHNQSPRNT--YQCA-MGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLL 721
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRS---ESYKA--- 97
+ +G ED++VMN+ASL+ G R + Y A
Sbjct: 722 TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQ 781
Query: 98 EVDNKDIQVKSRPS-----DDMLNFGKIQS-----KSGDIVIGKYAEI---------GAD 138
+ +N RP + +L++ + + K DI + K I A
Sbjct: 782 KYENGASDRILRPDRTVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAAL 841
Query: 139 HSIKLKHT---------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
+IK + + E ++ +V LSS+ + V IR + +GDKFSS
Sbjct: 842 ENIKYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHT----RRPEVGDKFSSR 897
Query: 190 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 222
HGQKGV G + Q T +++E GK G G Y
Sbjct: 898 HGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 957
Query: 223 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 282
+ F +G T + +S+ L N G ++ K + CP+
Sbjct: 958 GSAFGEPSGHADTVEA---ISETLV-----NRGFSYNGKDIIYSGITGCPL--------- 1000
Query: 283 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAH 342
++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLIA+
Sbjct: 1001 QAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1060
Query: 343 GASGNLHERLKCKNVANVIQ--RVVG----------GPYCRICNSADDIIKANVPYGAKL 390
GAS + ERL + +Q RV G C C + D+I +PY KL
Sbjct: 1061 GASMLIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKL 1120
Query: 391 LSQELSFSMGITLKF 405
L QEL SM I +
Sbjct: 1121 LIQELQ-SMNIVPRL 1134
>gi|67810699|gb|AAY82002.1| RNA polymerase II second largest subunit [Selaginella erythropus]
Length = 581
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 164/411 (39%), Gaps = 115/411 (27%)
Query: 2 SFLLGLSCGIIP--SHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQ 59
S +LG+ IIP H Q+ YQS QA+G TN +R+DTL L+YPQ
Sbjct: 199 SMILGVCGSIIPFPDHNQSPRN----TYQSAM-GKQAMGIHVTNYQLRMDTLAYVLYYPQ 253
Query: 60 RPLFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYK 96
+PL + L EDS++MNQ+S++ G FRS SY+
Sbjct: 254 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYR 313
Query: 97 AEVDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA 137
E VK RP+ DD + + D++IGK +
Sbjct: 314 DEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPVTQ 373
Query: 138 D-------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+H+E G++ +VLL++N DG F ++ V + +GD
Sbjct: 374 DETSTQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRF----VKTRVRSIRIPQIGD 429
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KFSS HGQKG +G E P QL+E +GK A
Sbjct: 430 KFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALM 489
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T +S+ L+ G + G ++ + L
Sbjct: 490 GKEGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL--------- 532
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG
Sbjct: 533 -----NAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 578
>gi|209876614|ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
[Cryptosporidium muris RN66]
gi|209555355|gb|EEA05400.1| DNA-directed RNA polymerase, beta subunit family protein
[Cryptosporidium muris RN66]
Length = 1219
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 129/512 (25%), Positives = 198/512 (38%), Gaps = 150/512 (29%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQ 53
+LG+ G+IP Y + SP Q +G N +R D++L
Sbjct: 751 ILGVVSGLIP-------------YPNHNQSPRNTYQCAMGKQVMGVVGLNQFLRCDSILY 797
Query: 54 QLFYPQRPL-------------------FWILISDCLGRP-EDSLVMNQASLE-----CG 88
L YPQ+PL + I G ED+++MN+AS++ C
Sbjct: 798 LLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAIMSYTGYDIEDAIIMNKASIDRGFARCF 857
Query: 89 VFRSESYKAE----------------VDNKDIQVKSR-----PSDDMLNFGKIQSKSGDI 127
V + ++ + + +DN +V + D + G++ ++ DI
Sbjct: 858 VIKRQTVELQKLPNGLAECVIGPNKLLDNSSTKVYNSNWNVLEEDGICRVGEMVAED-DI 916
Query: 128 VIGKYAEIGADH----------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 171
++ K + I IK K + +VLL+ N +G + + R
Sbjct: 917 IVNKVSPINTREYVGDPSQVNLSEYRLTPIKYKGIAPSYIDRVLLTENSEGSHIYKIITR 976
Query: 172 QSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQ 205
Q+ LGDKFSS HGQKGV+G + T +
Sbjct: 977 QT----RLPELGDKFSSRHGQKGVVGLIVSQEDFPFSESGWCPDLIMNPHGFPSRMTVGK 1032
Query: 206 LLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYF 264
L+E K + DG Y T F GG E + Q +G + K Y
Sbjct: 1033 LMELISSKASVLDGNYRYGTAF----GGTPVEDAAKCLIQ---------NGFHYSGKEYL 1079
Query: 265 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 324
+ ++ + IF FYQ+ HM DK+ R G Q LT +P R
Sbjct: 1080 TSGITGEAIE---------TYIFVGPIFYQKLRHMVLDKMHARGRGPRQILTRQPTEGRS 1130
Query: 325 RFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGP--------YCRICNSA 376
+ GG+ GEM+ DCL+A+GAS L ERL ++V + V YC C ++
Sbjct: 1131 KDGGLRLGEMERDCLVAYGASNLLIERLMLN--SDVFETYVCNKCGLFGYNNYCHYCRNS 1188
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
DDI +PY KLL QEL +M + + T+
Sbjct: 1189 DDISIIRLPYACKLLFQELQ-AMNVCPRIKTK 1219
>gi|302676710|ref|XP_003028038.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
gi|300101726|gb|EFI93135.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
Length = 1142
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 188/481 (39%), Gaps = 118/481 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG G+IP + + K + AIGF N R+DTLL YPQ+P+
Sbjct: 677 LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGFNQLN---RIDTLLYLSVYPQQPMV 733
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES--YK 96
+ +G ED+L++N+ASL+ C V R + +
Sbjct: 734 KTKTIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLVR 793
Query: 97 AEVDNKDIQVKSRPSDDMLNFGK----IQSKS----------GDIVIGKYAEIGA----- 137
+ ++ P D+ N K IQ+ GD+ + K + A
Sbjct: 794 KYPNGTYDRLADAPVDENGNIAKKYDIIQADGLAGVGERVDPGDVYVNKQSPTNATDNTF 853
Query: 138 ----------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 187
+ + K G + KVL+S ++ + V IRQ+ LGDKFS
Sbjct: 854 NGQAAAVPYKNTPLTYKSPVAGNIDKVLISDTENDQLLVKVLIRQT----RRPELGDKFS 909
Query: 188 SMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLM 220
S HGQKGV G + T +++E GK G G +
Sbjct: 910 SRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKL 969
Query: 221 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 280
Y T F GG E + + +G ++ K + PM+
Sbjct: 970 QYGTAF----GGSKVEDMSRILIE---------NGFSYAGKDMLTSGITGEPME------ 1010
Query: 281 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 340
+ ++ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 1011 ---AYVYFGPIYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLI 1067
Query: 341 AHGASGNLHERLKC---KNVANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQE 394
+GA+ L ERL K + Q ++G +C C S+ + + +PY AKLL QE
Sbjct: 1068 GYGATQLLLERLMISSDKFEVDACQECGLMGYNGWCTYCKSSKKMAQLTIPYAAKLLFQE 1127
Query: 395 L 395
L
Sbjct: 1128 L 1128
>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
Length = 1225
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 197/490 (40%), Gaps = 131/490 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 758 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 817
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN----------- 101
P ED+LV+N+ S++ G R + ++ V N
Sbjct: 818 YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 877
Query: 102 -------KDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKY------------AEIGADH 139
D ++ SD + G+ Q +G++ I K ++ G
Sbjct: 878 LSGPTYENDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSMSSGFPNSDAGRPV 936
Query: 140 S-----IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
S + K + + KV++S ++ V RQ+ +GDKFSS HGQKG
Sbjct: 937 SYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKG 992
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFA 227
V+G + T ++LE GK G G Y T F
Sbjct: 993 VVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG 1052
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + E Q + ++G ++ K Y + + + +F
Sbjct: 1053 ---GSPVQEMSQILI----------DNGFSYGGKDYLTSGITGEALPF---------YVF 1090
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1091 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1150
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1151 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1209
Query: 402 T--LKFDTQL 409
T LK D +
Sbjct: 1210 TARLKLDDEF 1219
>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1233
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 197/490 (40%), Gaps = 131/490 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 766 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 825
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN----------- 101
P ED+LV+N+ S++ G R + ++ V N
Sbjct: 826 YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 885
Query: 102 -------KDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKY------------AEIGADH 139
D ++ SD + G+ Q +G++ I K ++ G
Sbjct: 886 LSGPTYENDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSMSSGFPNSDAGRPV 944
Query: 140 S-----IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
S + K + + KV++S ++ V RQ+ +GDKFSS HGQKG
Sbjct: 945 SYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKG 1000
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFA 227
V+G + T ++LE GK G G Y T F
Sbjct: 1001 VVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG 1060
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + E Q + ++G ++ K Y + + + +F
Sbjct: 1061 ---GSPVQEMSQILI----------DNGFSYGGKDYLTSGITGEALPF---------YVF 1098
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1099 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1158
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1159 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1217
Query: 402 T--LKFDTQL 409
T LK D +
Sbjct: 1218 TARLKLDDEF 1227
>gi|296223273|ref|XP_002807565.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA2 [Callithrix jacchus]
Length = 1165
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 716 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 774
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 775 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 834
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 835 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 893
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 894 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 951
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 952 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 1007
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 1008 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1053
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1054 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1113
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1114 PPPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1164
>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 197/490 (40%), Gaps = 131/490 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 734 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 793
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN----------- 101
P ED+LV+N+ S++ G R + ++ V N
Sbjct: 794 YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 853
Query: 102 -------KDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKY------------AEIGADH 139
D ++ SD + G+ Q +G++ I K ++ G
Sbjct: 854 LSGPTYENDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSMSSGFPNSDAGRPV 912
Query: 140 S-----IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
S + K + + KV++S ++ V RQ+ +GDKFSS HGQKG
Sbjct: 913 SYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKG 968
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFA 227
V+G + T ++LE GK G G Y T F
Sbjct: 969 VVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG 1028
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + E Q + ++G ++ K Y + + + +F
Sbjct: 1029 ---GSPVQEMSQILI----------DNGFSYGGKDYLTSGITGEALPF---------YVF 1066
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1067 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1126
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1127 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1185
Query: 402 T--LKFDTQL 409
T LK D +
Sbjct: 1186 TARLKLDDEF 1195
>gi|33469941|ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens]
gi|92090637|sp|Q9H9Y6.2|RPA2_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=DNA-directed RNA
polymerase I 135 kDa polypeptide; Short=RPA135
gi|62420281|gb|AAX81999.1| unknown [Homo sapiens]
gi|119593998|gb|EAW73592.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_c [Homo
sapiens]
Length = 1135
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
513.88]
Length = 1226
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 197/490 (40%), Gaps = 131/490 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N +R+D++L + YPQ+P+ I ++
Sbjct: 759 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 818
Query: 70 CLGRP-----------------EDSLVMNQASLECGVFRSESYKAEVDN----------- 101
P ED+LV+N+ S++ G R + ++ V N
Sbjct: 819 YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 878
Query: 102 -------KDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKY------------AEIGADH 139
D ++ SD + G+ Q +G++ I K ++ G
Sbjct: 879 LSGPTYENDAPIRKHALLESDGLAAVGE-QVNAGEVYINKSTPDQSMSSGFPNSDAGRPV 937
Query: 140 S-----IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
S + K + + KV++S ++ V RQ+ +GDKFSS HGQKG
Sbjct: 938 SYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKG 993
Query: 195 VLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFA 227
V+G + T ++LE GK G G Y T F
Sbjct: 994 VVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG 1053
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
G + E Q + ++G ++ K Y + + + +F
Sbjct: 1054 ---GSPVQEMSQILI----------DNGFSYGGKDYLTSGITGEALPF---------YVF 1091
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
T +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1092 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1151
Query: 348 LHERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
L ERL ++ +V ++ Y C+ C S+ ++K +PY AKLL QEL SM +
Sbjct: 1152 LLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNV 1210
Query: 402 T--LKFDTQL 409
T LK D +
Sbjct: 1211 TARLKLDDEF 1220
>gi|449523027|ref|XP_004168526.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like,
partial [Cucumis sativus]
Length = 750
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 132/484 (27%), Positives = 192/484 (39%), Gaps = 118/484 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+IP + + YQ QA+G N R+DTLL L YPQRPL
Sbjct: 291 ILGVVAGLIPYPHHNQSPRNT--YQCAM-GKQAMGNIAYNQLRRMDTLLYLLVYPQRPLL 347
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFR---SESY 95
+ +G ED++VMN++SL+ C VF+ S +
Sbjct: 348 TTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQ 407
Query: 96 KAEVDNKDIQVKSRPSDDMLNFGKIQSKSG-----------DIVIGKYAEIGADHS---- 140
K E + D V+ ++D +I G DI + K + I S
Sbjct: 408 KYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIITKGSPLPG 467
Query: 141 ------------IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 188
K E +V +V LS++ + + I+ + LGDKFSS
Sbjct: 468 IPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKND----CLCIKFLIRQTRRPELGDKFSS 523
Query: 189 MHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMS 221
HGQKGV G + Q T +++E GK G G
Sbjct: 524 RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 583
Query: 222 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
Y + F +G H V + + R G ++ K + + CP+
Sbjct: 584 YGSAFGEPSG------HADKVDAISETLIKR--GFSYNGKDFLYSGITGCPL-------- 627
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 341
++ IF +YQ+ HM DK+ R +G LT +P R R GG+ GEM+ DCLIA
Sbjct: 628 -QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 686
Query: 342 HGASGNLHERLKCKNVANVIQ--RVVG--GPY--------CRICNSADDIIKANVPYGAK 389
+GAS ++ERL + +Q RV G G Y C C D+I +PY K
Sbjct: 687 YGASMLIYERLMISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKIGDNISTMKLPYACK 746
Query: 390 LLSQ 393
LL Q
Sbjct: 747 LLIQ 750
>gi|83405170|gb|AAI10834.1| POLR1B protein [Homo sapiens]
Length = 952
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 503 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 561
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 562 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 621
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 622 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 680
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 681 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 738
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 739 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 794
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 795 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 840
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 841 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 900
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 901 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|39644698|gb|AAH04882.4| POLR1B protein [Homo sapiens]
Length = 582
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 133 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 191
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 192 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 251
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 252 QKLDDDGLPFIGAKLQYGDPYY-SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 310
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 311 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 368
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 369 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 424
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 425 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 470
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 471 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 530
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 531 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 581
>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
Length = 1136
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/493 (25%), Positives = 195/493 (39%), Gaps = 123/493 (24%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YPQ P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------A 97
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 98 EVDNKDIQVKSRPSDDMLNFGKI----------------QSKSGDIVIGKYAEIGADHSI 141
N+ P D L I Q ++ I+I K E+ A SI
Sbjct: 788 RYANQTFDRIMGPVKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINK--EMPAVTSI 845
Query: 142 K----------------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
K E + +V++S+N + + +RQ+ +GDK
Sbjct: 846 NPLEGQSQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQT----RIPEIGDK 901
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
FSS HGQKGV G + T + LE GK G +G
Sbjct: 902 FSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 961
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
Y T F S + ++L+ G ++ K +F + P++
Sbjct: 962 KFHYGTAFGGSKAADVQ-------AELVR------HGFNYMGKDFFYSGITGAPLE---- 1004
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DC
Sbjct: 1005 -----AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDC 1059
Query: 339 LIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLS 392
LI++GAS + ERL +V R+ +C C S+ + K ++PY KLL
Sbjct: 1060 LISYGASMLIMERLMISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLF 1119
Query: 393 QELSFSMGITLKF 405
QEL+ SM + K
Sbjct: 1120 QELT-SMNVVPKL 1131
>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1208
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 195/489 (39%), Gaps = 130/489 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLF---WILISD 69
G + Y SP QAIG +N R+D++L + YPQ+P+ I ++
Sbjct: 742 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVKSRTIELTK 801
Query: 70 CLGRP-----------------EDSLVMNQASLE-----CGVFRS-------------ES 94
P ED+LV+N+ S++ C VFR +S
Sbjct: 802 YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTTLKSYPNGAKDS 861
Query: 95 YKAEVDNKDIQVKSRP---SDDMLNFGKIQSKSGDIVIGKYA------------EIGA-- 137
+A ++ SD + G++ + +G+ I K +IG
Sbjct: 862 LRAPTFENGAPIRKHALLESDGLAAVGEMVN-NGETYINKVTPRVQNSLGFSGPDIGGGD 920
Query: 138 --DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 195
+ + K + + KVL+S+ + V RQ+ +GDKFSS HGQKGV
Sbjct: 921 VLEAPMNYKLPDPSYIDKVLVSATEGETQLIKVLTRQT----RRPEVGDKFSSRHGQKGV 976
Query: 196 LGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPFAT 228
+G + T ++LE GK G G Y T F
Sbjct: 977 VGIIADQADMPFSDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFG- 1035
Query: 229 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
G + E Q + + G ++ K Y + P+ + +FT
Sbjct: 1036 --GSPVQEMSQILI----------DKGFSYGGKDYLTSGITGEPLPF---------YVFT 1074
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S L
Sbjct: 1075 GPIYYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIAYGTSQLL 1134
Query: 349 HERLKC---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGIT 402
ERL ++ ++ ++ Y C C S+ ++K +PY AKLL QEL SM +T
Sbjct: 1135 LERLMISSDRHEVDICEKCGFMGYLNWCPGCKSSRSVVKMVIPYAAKLLIQEL-MSMNVT 1193
Query: 403 --LKFDTQL 409
LK D +
Sbjct: 1194 ARLKLDDEF 1202
>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
Length = 927
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 169/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DT+ L+YPQ+P
Sbjct: 543 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNFAERMDTMANILYYPQKP 599
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 600 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMDQ 659
Query: 102 KD------IQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
+ ++ +P+ +D L ++ DI+IGK A I D
Sbjct: 660 EKRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDV 719
Query: 139 ---------H-----SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
H S L+ TE G+V +V+L++N +G F V +R + +GD
Sbjct: 720 DEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT----KIPQIGD 775
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K +
Sbjct: 776 KFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 835
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS LL G ++ G ++ Y L
Sbjct: 836 GFEGDATPFTDVT--------VESVSTLLRQNGYQSRGFEVMYNGYTGRKL--------- 878
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+C V F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 879 -VCQV----FLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927
>gi|403303875|ref|XP_003942544.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Saimiri boliviensis boliviensis]
Length = 1070
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 621 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 679
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 680 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKLGDPRVL 739
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 740 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 798
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 799 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 856
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 857 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 912
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 913 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 958
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 959 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1018
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1019 PPPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|322510564|gb|ADX05878.1| putative DNA-directed RNA polymerase [Organic Lake phycodnavirus 1]
Length = 1164
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 179/452 (39%), Gaps = 93/452 (20%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RP 74
QAIG +N N R+D L Y RPL + + +
Sbjct: 727 QAIGIYVSNFNKRMDKTAYILNYTMRPLVETRVMNMMKLNQLPCGNQVIVAIMTHGGYNQ 786
Query: 75 EDSLVMNQASLECGVFRSESYKAEVD-----NKDIQVKSRPSDDML------NFGKIQSK 123
EDSL+ N+ SL+ G+F + Y E D N + +++ +P+ ++ N+ KI +
Sbjct: 787 EDSLLFNRGSLDRGLFHATIYHTEKDEDKKINGEEELRVKPNPNITRNMKFGNYDKINKQ 846
Query: 124 ----------SGDIVIGKYAEIGA------------DHSIKLKHTERGLVLKVLLSSNDD 161
DI+I K I D S + TE V K + N D
Sbjct: 847 GVIDENELIEDKDIIISKVVVIKENKNDNTKLIKYEDQSKSYRTTEECYVDKNYIDRNGD 906
Query: 162 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS 221
G F V +R + +GDKFSS HGQKG +G ++ DGL
Sbjct: 907 GHTFCKVRVRST----RKPNIGDKFSSRHGQKGTIG-------NIINEEDMPYTKDGLRP 955
Query: 222 --YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-------IFKHYFLFCLFECP 272
P A + I + ++ + +LL +G G +F +FK +E
Sbjct: 956 DIIINPHAIPSRMTIAQLKETLIGKLLLKLGLFGDGTSFGEMDMEEVFKE-LKKHDYESR 1014
Query: 273 MDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 328
+ + + + + IF +YQ+ HM DK R G LT +P R R GG
Sbjct: 1015 GNELLYDGKTGEQIETSIFIGPVYYQRLKHMVNDKQHSRCIGPMVNLTRQPAEGRSRDGG 1074
Query: 329 IEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNS 375
+ FGEM+ DC+I+HGAS ER+ KC +A V C +C +
Sbjct: 1075 LRFGEMERDCMISHGASKFTKERIYDVSDKYAVNVCKKCGMIA-VYNDKEHIHLCNVCEN 1133
Query: 376 ADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
D +PY KLL QEL +M I + T
Sbjct: 1134 RTDFSNVKIPYSCKLLFQEL-ITMNIVPRIMT 1164
>gi|449666447|ref|XP_002161911.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Hydra
magnipapillata]
Length = 1044
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 143/328 (43%), Gaps = 51/328 (15%)
Query: 123 KSGDIVIGKYAEIGADH-SIKLKHTERGLVLKVLLSSNDDG-KNFAVVSIRQSVNMVHSA 180
+ GD Y I ++ ++K KH E + + + +D G + VSI+ + +
Sbjct: 726 QHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQ--RNP 783
Query: 181 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 239
+GDKF+S HGQKG+L + PA+ + D + + + P + G +I +
Sbjct: 784 IIGDKFASRHGQKGILSV--KWPAENMPFTESGMIPDIIFNPHGFPSRMTIGMMI----E 837
Query: 240 SFVSQLLNCIGARNSGITFIFK------HYFLFCLFECPMDWIAFICLVRSL-------- 285
S + G + FIF HY L + ++ + +
Sbjct: 838 SMAGKSAALHGITHDSTPFIFSEEEPAAHYMGEILVKAGYNYYGNERMYSGINGKEMDVD 897
Query: 286 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 345
IF I +YQ+ HM DK + R+TG LT +PV RKR GGI FGEM+ D LIAHG+
Sbjct: 898 IFIGIVYYQRLRHMVADKYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDALIAHGSG 957
Query: 346 GNLHERL----------KCKNVANVIQRVVGGP---------------YCRICNSADDII 380
LH+RL C ++ +V P +CR+C DDI
Sbjct: 958 FLLHDRLFNCSDRCETHVCTKCGSIFTPIVRKPVTHHDSLIGFNDRKWFCRVCGHGDDIQ 1017
Query: 381 KANVPYGAKLLSQELSFSMGITLKFDTQ 408
K VPY K L EL+ +M I L D +
Sbjct: 1018 KMLVPYVFKYLIAELT-AMNIRLVLDVK 1044
>gi|354471218|ref|XP_003497840.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Cricetulus griseus]
Length = 1079
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 182/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 630 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVM 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F + + GD G + K E +V + + SND G F
Sbjct: 749 QKLDDDGLPFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKF 808
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 809 KCICI--TIRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF + +E+ + + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPF------IFSEESSALGYFGEMLKAAGYNFYGT 920
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 921 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 966
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 967 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1027 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|344248836|gb|EGW04940.1| DNA-directed RNA polymerase I subunit RPA2 [Cricetulus griseus]
Length = 996
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 183/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 547 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVA 605
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEV-----------DN-------KDIQVK 107
ED++++N+AS E G YK+E DN D +V
Sbjct: 606 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVM 665
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F + + GD G + K E +V + + SND G F
Sbjct: 666 QKLDDDGLPFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKF 725
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 726 KCICI--TIRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 783
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF + +E+ + + ++L G G
Sbjct: 784 RMTIGMLIESMAGKSAALHGLCHDATPF------IFSEESSALGYFGEMLKAAGYNFYGT 837
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 838 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 883
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 884 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 943
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 944 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 995
>gi|398407271|ref|XP_003855101.1| DNA-directed RNA polymerase III subunit RET1 [Zymoseptoria tritici
IPO323]
gi|339474985|gb|EGP90077.1| hypothetical protein MYCGRDRAFT_84794 [Zymoseptoria tritici IPO323]
Length = 1158
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 200/494 (40%), Gaps = 125/494 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ+ PQAIG N R+DTLL + YPQ+P+
Sbjct: 696 ILGAVAGLIPYPHHNQSPRN--TYQAC-LPPQAIGAIAYNQFTRIDTLLYLMVYPQKPMV 752
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLECGVFRSESYK------- 96
+ + ED+LV+N+AS + G R + +K
Sbjct: 753 TTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKISMPLK 812
Query: 97 ----------AEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLK-- 144
+ D K+ + + D ++ G + +S D+ + K + +I K
Sbjct: 813 SYGNGYQDRLGDRDAKNTRHRKIGKDGLVEVGS-EIESSDMYMLKEQPMNQASAIPQKEQ 871
Query: 145 -----HTERGL-----VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
H L KV +++N+ + RQ+ +GDKFSS HGQKG
Sbjct: 872 KWSPMHMSYKLPDPCYADKVQITTNEANSTIIKIQTRQT----RRPEIGDKFSSRHGQKG 927
Query: 195 VLGFLEQ--------------------------TPAQLLEAALGKGACDGLMSYATPFAT 228
V+G L + T ++LE GK G+++ + T
Sbjct: 928 VVGLLAEQVDMPFSDSGVIPDIIMNPHGFPSRMTVGKMLELVSGKA---GVLAGKQEYGT 984
Query: 229 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 288
+ GG E + G T + KH F + +C I L + F
Sbjct: 985 AFGGSKVE----------------DMGATLV-KHGFSYSGKDCLTSGITGESLPMYVFFG 1027
Query: 289 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 348
I +YQ+ HM +DK+ R TG LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1028 PI-YYQKLKHMVQDKMHSRATGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLL 1086
Query: 349 HERLKCKNVANVIQRVVGGPYCRICN------------SADDIIKANVPYGAKLLSQELS 396
ERL + A+ + C+ C S+ +++ +PY AKLL QEL
Sbjct: 1087 LERLMISSDAHEVD------VCQNCGMMGYNNWCQSCSSSRSVVRMTMPYAAKLLIQEL- 1139
Query: 397 FSMGITLKFDTQLS 410
M + +K QL+
Sbjct: 1140 --MSMNVKASLQLA 1151
>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta
vitellina]
Length = 930
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 167/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 546 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYQLRMDTMANILYYPQKP 602
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS Y+ D
Sbjct: 603 LATTRSMEYLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRCYNDQ 662
Query: 102 K---------DIQVKSRPSDDMLNFGK-------------IQSKSGDIVIGKYAEIGAD- 138
+ + + +R + L G I+ DI+IGK A I D
Sbjct: 663 EKKIGMQVMEEFEKPTRQTTLRLKHGTYEKLEEDGLIAPGIRVSGEDIIIGKTAPISPDT 722
Query: 139 --------HSIK------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
H K L+ TE G+V V++++N +G F V +R + +GD
Sbjct: 723 QELGQRTSHHTKRDVSTPLRSTENGIVDHVVVTTNQEGLKFVKVRMRST----RVPQIGD 778
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 779 KFASRHGQKGTIGITYRHEDMPFSAQGVVPDLIINPHAIPSRMTVAHLIECQLSKVSAMG 838
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF V EQ VSQ L G ++ G ++ + L
Sbjct: 839 GYEGDATPFTE----VTVEQ----VSQQLRNQGFQSRGFEVMYNGHTGKKLM-------- 882
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 883 ------AQVFLGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 930
>gi|403303873|ref|XP_003942543.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 1079
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 186/472 (39%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKLGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 808 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 865
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 866 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 921
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 922 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 967
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 968 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1027
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1028 PPPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|49522875|gb|AAH73857.1| POLR1B protein, partial [Homo sapiens]
Length = 560
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 186/471 (39%), Gaps = 113/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 111 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 169
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 170 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 229
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 230 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 288
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 289 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 346
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 347 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 402
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 403 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 448
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 449 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 508
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 509 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 558
>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
Length = 1141
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 175/463 (37%), Gaps = 123/463 (26%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCL---GRP----------------- 74
QA+G N N+R D+ L +P++PL + + +P
Sbjct: 694 QALGLYAANFNVRTDSRGHILHHPEKPLVQTKPLEVIRYNEKPAGQNAVVAIMSYTGYNI 753
Query: 75 EDSLVMNQASLECGVFRS----------------ESYKAEVDN------KDIQVKSRPSD 112
ED+L+ N++S+E G RS + K EV + +V +
Sbjct: 754 EDALIFNKSSVERGFMRSTFFRLYSTEEKKYPGGQEDKIEVPEAGVKIYRGFEVYKKLDP 813
Query: 113 DMLNFGKIQSKSGDIVIGKY---------------AEIGADHSIKLKHTERGLVLKVLLS 157
D + + + G+ +IGK A + D S+ +++ E+G+V V +S
Sbjct: 814 DGIISPETEVADGEALIGKTSPPRFLEEFKEYGFGASVRKDTSVTIRYGEKGVVDSVFIS 873
Query: 158 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------ 199
+G V +R +GDKF+S HGQKGV+G L
Sbjct: 874 ETQEGDKLVKVRVRD----YRIPEIGDKFASRHGQKGVIGMLIPQYDMPYTEEGIVPDII 929
Query: 200 --------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 250
T QLLE GK A G ATPF+ + E + + + G
Sbjct: 930 INPHAFPSRMTLGQLLEMLAGKTAALLGKTVDATPFSKEP---VEEIRMKLMKKGYSPDG 986
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
+++ I + I I +YQ+ HM DK R+ G
Sbjct: 987 RE--------------VMYDGRTGEIIGVP-----IMIGIVYYQRLHHMVADKFHARSRG 1027
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI--------- 361
Q LT +P R R GG+ FGEM+ D L+ HGAS L ERL + VI
Sbjct: 1028 PVQLLTRQPTEGRAREGGLRFGEMERDVLVGHGASMLLRERLLESSDKTVIYVCAKCGHI 1087
Query: 362 ---QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
R C I +I V YG KLL QEL SMGI
Sbjct: 1088 GWFDRNKNAYVCPIHGDKGEIYPVEVAYGFKLLIQEL-MSMGI 1129
>gi|40642972|emb|CAD89598.1| RNA polymerase II, second largest subunit [Borago officinalis]
Length = 355
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 149/378 (39%), Gaps = 108/378 (28%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFW------------------ILISDCLG--RP 74
QA+G TN R+DTL L+YPQ+PL I+ C
Sbjct: 4 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ 63
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------D 112
EDS++MNQ+S++ G FRS SY+ VK RP D
Sbjct: 64 EDSVIMNQSSIDRGFFRSLFFRSYRDXEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDD 123
Query: 113 DMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSN 159
D L + D++IG I D HS ++H+E G+V +VLL++N
Sbjct: 124 DGLAPPGTRVAGEDVIIGXTTPINQDEAQGQASRYTRRDHSTSMRHSENGMVDQVLLTTN 183
Query: 160 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 203
DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 184 ADGLRFVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 239
Query: 204 ----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 252
QL+E +GK A G ATPF T +S+ L+ G +
Sbjct: 240 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQ 291
Query: 253 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 292 MRGFETMYNGHTGRRLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGPV 337
Query: 313 QPLTGRPVADRKRFGGIE 330
Q LT +P R R GG+
Sbjct: 338 QILTRQPAEGRSRDGGLR 355
>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
ranarum]
Length = 720
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 162/414 (39%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 336 SMILGTCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQLRMDTMANILYYPQKP 392
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDSL+MNQ S++ G+FRS Y++ +D
Sbjct: 393 LCTTRAMEYLRFRELPAGQNAIVAILCYSGYNQEDSLIMNQTSIDRGLFRSIFYRSYMDQ 452
Query: 102 ---------KDIQVKSRPSDDMLNFGKIQSKSG-------------DIVIGKYAEIGADH 139
++ + +R S L G + G DI+IGK A I D
Sbjct: 453 EKKVGMMVMEEFEKPTRESTLRLKRGTYEKLEGDGLIAPGTRVSGDDIIIGKTAPIPPDS 512
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V+L++N +G F V +R + +GD
Sbjct: 513 EELGQRTKTHNKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRST----RVPQMGD 568
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P ++E L K
Sbjct: 569 KFASRHGQKGTIGVTYRQEDMPFNREGIVPDLIINPHAIPSRMTIGHMVECLLSKVSTLS 628
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF TE +S L G + G +F + L
Sbjct: 629 GNEGDATPF--------TEVTVEAISHALQEHGYQKRGFEVLFNGHTGRKLT-------- 672
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 673 ------AQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 720
>gi|10434547|dbj|BAB14296.1| unnamed protein product [Homo sapiens]
Length = 714
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 186/471 (39%), Gaps = 113/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 265 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 323
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 324 VTSYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 383
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 384 QKLDDDGLPFIGAKLQYGDPYY-SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 442
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 443 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 500
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 501 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 556
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 557 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 602
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 603 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 662
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 663 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 712
>gi|354471216|ref|XP_003497839.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Cricetulus griseus]
Length = 1135
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 182/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVM 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NF 165
+ DD L F + + GD G + K E +V + + SND G F
Sbjct: 805 QKLDDDGLPFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKF 864
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+ I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 865 KCICI--TIRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 922
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF + +E+ + + ++L G G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPF------IFSEESSALGYFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|449328562|gb|AGE94839.1| DNA-directed RNA polymerase III subunit 2 130kDa subunit
[Encephalitozoon cuniculi]
Length = 1110
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 177/421 (42%), Gaps = 70/421 (16%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRPE------------------- 75
QAIG + N R D+++ QL Y RP+ I D + E
Sbjct: 699 QAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDI 758
Query: 76 -DSLVMNQASLECGVFRSESYKAEV-------DNKDIQVKSRPSDDMLN---FGK--IQS 122
D+LV+N+ S+E G+FR E YK + + P + +L+ GK
Sbjct: 759 EDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGMSDVLWPNPKESVLDEDGLGKPGKMV 818
Query: 123 KSGDIVIGKYAEIGADHSI--KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
+ G + + K + + + K+ + + K+L++ + D V I+ +
Sbjct: 819 RDGTVYVNKMSPVDGTYKFTGKVHRGDPAYIDKILITKSQDQ-----VLIKTMLRQTRVP 873
Query: 181 CLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGV---IT 235
+GDKFSS HGQKGV+G L Q + + D +M+ + P + G + I+
Sbjct: 874 EIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGI---VPDIIMNPHGFPSRMTVGKIVELIS 930
Query: 236 EQHQSFVSQLLNCIGARNSGIT----FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 291
+ Q+L+ + + + + KH F + +C L + IF
Sbjct: 931 GKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLA-AYIFFGPV 989
Query: 292 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 351
FYQ+ HM DK+ R G LT +P R + GG++ GEM+ DCLI +GAS + ER
Sbjct: 990 FYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITER 1049
Query: 352 LKCKNVANVIQRVVGGPYCRICN-----------SADDIIKANVPYGAKLLSQELSFSMG 400
L ++V + V CR C K +PY KLL QEL SM
Sbjct: 1050 LMTS--SDVFEAYV----CRSCGVLAFKGCCVACKGTKPAKVKMPYACKLLFQEL-MSMN 1102
Query: 401 I 401
I
Sbjct: 1103 I 1103
>gi|449458081|ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 1173
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 178/415 (42%), Gaps = 93/415 (22%)
Query: 75 EDSLVMNQASLECGVFRSESYKAE-VDNKDIQVKSRPSDDMLNFGKIQSKSGDIV----- 128
ED++++N++S+E G+F + Y+ E +D D +S S M I + I+
Sbjct: 769 EDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGL 828
Query: 129 --IGK-----------YAEI-GADHSIKLKHTERGLVLKVLLS-SNDDGKNFAVVSIRQS 173
+G+ Y E+ G ++KLK +E +V V + N + + R+
Sbjct: 829 PYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRP 888
Query: 174 VNMVHSACLGDKFSSMHGQKGVLGFL---------------------------EQTPAQL 206
N +GDKFSS HGQKGV L T A L
Sbjct: 889 RN----PMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAML 944
Query: 207 LEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFL 265
+E+ KG C +G ATPF +S ++ L++ +G+ + I F ++ L
Sbjct: 945 MESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGS--TLIKKGFNYHGL 1002
Query: 266 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 325
L+ + + IF +YQ+ HM DK + R+TG+ +T +P+ RK+
Sbjct: 1003 EVLYSG-----VYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKK 1057
Query: 326 FGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANV-------------------IQR 363
GGI FGEM+ D ++AHGAS LH+RL ++A+V ++
Sbjct: 1058 GGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVRE 1117
Query: 364 VVGGP--------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 410
+ G P C C ++ + +PY K L+ EL+ + +K QLS
Sbjct: 1118 IGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELA---AMNIKMTLQLS 1169
>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
trigonosporus]
Length = 937
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 168/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+GF TN R+DT+ L+YPQ+P
Sbjct: 553 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGFFLTNYMRRMDTMANILYYPQKP 609
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + + L EDS++MNQ+S++ G+FRS
Sbjct: 610 LATTMAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 669
Query: 93 ---------ESYKAEVDNKDIQVKSRPSDDMLNFG----KIQSKSGDIVIGKYA------ 133
E ++ ++ +++K D + G ++ DI+IGK +
Sbjct: 670 EKRVGINLLEQFEKPFRSETLRLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTSPLSPES 729
Query: 134 -EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G D S L+ TE G+V V+ ++N DG + V +R + +GD
Sbjct: 730 QELGQRTTQHTQRDASTPLRSTESGIVDSVVFTTNADGMKYVKVRVRTT----KVPQIGD 785
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 786 KFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVATLK 845
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL ATPF T VS LL G + G ++ + L
Sbjct: 846 GLEGDATPFTDVT--------VDSVSALLRAEGYHSRGFEIMYNGHTGKKL--------- 888
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
R+ +F T+YQ+ HM +DK+ R G Q +T +PV R R GG+ F
Sbjct: 889 -----RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 937
>gi|10433976|dbj|BAB14082.1| unnamed protein product [Homo sapiens]
Length = 1079
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 185/471 (39%), Gaps = 111/471 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL ++ + + +G
Sbjct: 630 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 688
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 689 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 748
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGKNF 165
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 749 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSG- 806
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 203
+R ++ + + +GDKF+S HG+KG+L L E P
Sbjct: 807 KFKCVRITMRVPRNPTIGDKFASRHGRKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 866
Query: 204 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 258
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 867 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE- 921
Query: 259 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 318
+ Y E D IF + +YQ+ HM DK + R TG+ +T +
Sbjct: 922 --RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQ 968
Query: 319 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 368
P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 969 PIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1028
Query: 369 ------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1029 PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|403303871|ref|XP_003942542.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Saimiri boliviensis boliviensis]
Length = 1135
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKLGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cenococcum geophilum]
Length = 935
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 168/414 (40%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R++T++ L+YPQ+P
Sbjct: 551 SMILGICASIIPFPDHNQSPRN--TYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKP 607
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +
Sbjct: 608 LATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTEQ 667
Query: 101 NKDIQVK-----SRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
K I V +P+ DD + ++ DI+IGK A I D
Sbjct: 668 EKRIGVNVLEQFEKPTRSDTLRMKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPPDA 727
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL ++N +G F V R + +GD
Sbjct: 728 KELGQKTIMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT----KVPQIGD 783
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K G+
Sbjct: 784 KFASRHGQKGTIGVTYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLSKVGSLR 843
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + +
Sbjct: 844 GCEGDATPFTDVT--------VESVSKLLREHGYQSRGFEVMYNGHTGKKMV-------- 887
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 888 ------AQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 935
>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1186
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 194/492 (39%), Gaps = 145/492 (29%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N +R+D+LL + YPQ+P+ + +
Sbjct: 719 GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 778
Query: 73 RP--------------------EDSLVMNQASLE-----CGVFRS-----ESYK------ 96
ED+LV+N+ S++ C VFR +SY
Sbjct: 779 YDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLKSYSNGTKDK 838
Query: 97 ---------------------------AEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVI 129
+V++ ++ + ++ L+ G S +G +
Sbjct: 839 LKGPDRENGVPIRKHALLDNDGLAAVGEKVNHGEVYINKVTPENALSSGITGSDAGRPI- 897
Query: 130 GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
A I + + KL + + KV++S+ + V RQ+ +GDKFSS
Sbjct: 898 ---AYIPSPQTYKL--PDPSYIDKVMISATEAENQLIKVQTRQT----RVPEVGDKFSSR 948
Query: 190 HGQKGVLGFLEQ--------------------------TPAQLLEAALGKGACDGLMSYA 223
HGQKGV+G + + T ++LE GK G++S
Sbjct: 949 HGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA---GILSGQ 1005
Query: 224 TPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVR 283
+ T+ GG E+ + + + G ++ K Y + P+
Sbjct: 1006 FGYGTAFGGSPVEEMSAILV---------DHGFSYGGKDYLTSGITGEPLP--------- 1047
Query: 284 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 343
+ +F +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G
Sbjct: 1048 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1107
Query: 344 ASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 393
S L ERL C+N +G +C+ C ++ ++K +PY AKLL Q
Sbjct: 1108 TSQLLLERLMISSDRHEVDVCENCG--FMGYLG--WCQRCKTSRGVVKMAIPYAAKLLVQ 1163
Query: 394 ELSFSMGITLKF 405
EL FSM + +
Sbjct: 1164 EL-FSMNVVARL 1174
>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
Length = 1222
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 131/512 (25%), Positives = 196/512 (38%), Gaps = 138/512 (26%)
Query: 21 MQGWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDC 70
+ G V + SP QA+G TN R+D+LL L YPQ+P+ + D
Sbjct: 707 VSGLVAFPHHNQSPRNTYQCAMGKQAMGSVATNQYERMDSLLYSLVYPQKPMVKSRVLDL 766
Query: 71 L---GRP-----------------EDSLVMNQASLECGVFRSESYK-------------- 96
+ P ED++V+N+ASL+ G R K
Sbjct: 767 VHFDALPGGCNATLAVMSYSGYDIEDAIVLNRASLDRGFMRCLVIKRHQVSIRRYANGAC 826
Query: 97 --------------------AEVDNKDI-QVKSRPSDD--MLNFGKIQSKSGDIVIGKYA 133
+ +DN I +V + D M+N ++
Sbjct: 827 DRTTGPPSIELFLQGYVFRYSALDNDGICRVGEKLHDQSIMINREMPVEDRDELTPALPG 886
Query: 134 EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQK 193
+ A + K +V +VLL++N+ + V +RQ +GDKF+S HGQK
Sbjct: 887 RVSAFVVLHYKSPAPSVVDRVLLTANETDQFLVKVMVRQ----CRRPEVGDKFASRHGQK 942
Query: 194 GVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATPF 226
GV G + T +++E GK G C G +Y T F
Sbjct: 943 GVCGAIVSQEDMPFSDTGVCPDVIMNPHGFPSRMTVGKIIELVAGKCGVCSGRQAYGTAF 1002
Query: 227 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 286
TG S C ++ G ++I K + P+ R +
Sbjct: 1003 GEKTGSADCASEAS-------CTLLKH-GFSYIGKDMLYSGISGEPL---------RVYV 1045
Query: 287 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 346
F FYQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI++GA+
Sbjct: 1046 FMGPVFYQKLKHMVMDKMHARARGPRAQLTRQPTEGRSRDGGLRLGEMERDCLISYGAAN 1105
Query: 347 NLHERLK----------CK-------NVANVIQRVVG--GPYCRICNSADDIIKANVPYG 387
+ ERL C+ + A +R+ +C+ C S + + + +PY
Sbjct: 1106 LITERLMISSDQFDVHVCEGCGLLGYSTAQNTERIDSTFTSWCQNCRSNEQMARICIPYA 1165
Query: 388 AKLLSQELSFSMGIT--LKFDTQLSGVSMAAV 417
KLL QEL SM +T LK + L G S A V
Sbjct: 1166 CKLLFQELQ-SMNVTPRLKLEDML-GASTAPV 1195
>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
Length = 914
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 172/414 (41%), Gaps = 113/414 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS + QA+G TN IR+DT+ L+YPQ+P
Sbjct: 530 SMILGICASIIPFPDHNQSPRN--TYQSAM-AKQAMGIYLTNFLIRMDTMANILYYPQKP 586
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS Y++ +D
Sbjct: 587 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 646
Query: 101 -----------------NKDIQVKSRPSDDMLNFGKIQSKSG----DIVIGKYAEIGADH 139
+ +++K D + + G I +G DI+IGK A I D
Sbjct: 647 EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDS 706
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S LK TE G+V +VL+++N +G+ F V +R + +GD
Sbjct: 707 EELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRAT----RIPQIGD 762
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGAC-D 217
KF+S HGQKG +G E P L+E L K A
Sbjct: 763 KFASCHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLI 822
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T+ VS L G ++ G+ ++ + L
Sbjct: 823 GNEGDATPF--------TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL--------- 865
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 331
++ I+ T+YQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 866 -----QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 914
>gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta]
Length = 567
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 160/404 (39%), Gaps = 111/404 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN +R+DTL L+YPQ+P
Sbjct: 193 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKP 249
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + L EDS++MNQ+S++ G FRS SY+ E
Sbjct: 250 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDE 309
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP+ DD L + D++IGK I D
Sbjct: 310 EKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQDE 369
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
S L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 370 AGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS----VRIPQIGDKF 425
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 426 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 485
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 486 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 526
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
++IF T+YQ+ HM +DK+ R G Q LT +P R
Sbjct: 527 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 567
>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
fuckeliana]
Length = 1213
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 131/489 (26%), Positives = 198/489 (40%), Gaps = 130/489 (26%)
Query: 23 GWVLYQSQKHSP----------QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG 72
G + Y SP QAIG N R+DTLL + YPQ+P+ + +
Sbjct: 745 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIK 804
Query: 73 RP--------------------EDSLVMNQASLE-----CGVFRSESYKAEVDNKDIQVK 107
ED+LV+N+AS + C VFR Y ++ + +
Sbjct: 805 YDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRK--YSTQLKKYPNRSQ 862
Query: 108 SRPSDDML-NFGKIQSK-----------------SGDIVIGKYAE-------IGADHSIK 142
R +D ++ GK +K +G++ + K + +G D ++
Sbjct: 863 DRIADRVIGENGKPIAKHRILGTDGIALVGERINAGEVYLNKESPSNPNSTGMGNDFNLN 922
Query: 143 --------LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
K + + KV+LS ++ V RQ+ LGDKFSS HGQKG
Sbjct: 923 DMKPAPMGYKLHDHAYIDKVMLSQTENESGVLKVQTRQT----RRPELGDKFSSRHGQKG 978
Query: 195 VLGFL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFA 227
V+G + E P ++LE GK G +G + Y T F
Sbjct: 979 VVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVINGSLEYGTCFG 1038
Query: 228 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 287
S V+ Q+L G SG F+ I L + F
Sbjct: 1039 GSNVDVM--------GQILIDNGFSYSGKDFV-------------TSGITGESLPAYVFF 1077
Query: 288 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 347
I +YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS
Sbjct: 1078 GPI-YYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQL 1136
Query: 348 LHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMG 400
L ERL + A+ + ++G +C+ C S+ + +PY AKLL QE LS ++
Sbjct: 1137 LLERLMLSSDAHQVDICETCGLMGYSGWCQTCKSSKGVSTMTMPYAAKLLVQEMLSMNVL 1196
Query: 401 ITLKFDTQL 409
+ LK + +
Sbjct: 1197 VRLKLEDEF 1205
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,434,774,452
Number of Sequences: 23463169
Number of extensions: 262476998
Number of successful extensions: 512620
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6805
Number of HSP's successfully gapped in prelim test: 2196
Number of HSP's that attempted gapping in prelim test: 487185
Number of HSP's gapped (non-prelim): 19095
length of query: 417
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 272
effective length of database: 8,957,035,862
effective search space: 2436313754464
effective search space used: 2436313754464
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)