BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014847
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/512 (49%), Positives = 298/512 (58%), Gaps = 136/512 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC ++P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 693 LSFLLGVSCAVVP--FANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 750
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF L S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 751 PLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 810
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ E GA
Sbjct: 811 EVDAKDSE-KRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGA 869
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 870 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 925
Query: 198 FLE--------------------------QTPAQLLEAALGKG------------ACDGL 219
+LE QTP QLLEAAL KG A L
Sbjct: 926 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKL 985
Query: 220 MSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDWI 276
+ATPF+T ITEQ H++ S+ N R+
Sbjct: 986 TRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE--------------------- 1024
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
++RS+IF TFYQ+ +HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM+
Sbjct: 1025 ----MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1080
Query: 337 DCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSAD 377
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+D
Sbjct: 1081 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSD 1140
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
+++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1141 HVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1171
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/513 (49%), Positives = 297/513 (57%), Gaps = 137/513 (26%)
Query: 1 MSFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR 60
+SFLLG+SC I+P VLYQSQKH QAIGF +TNPNIR DTL QQLFYPQ+
Sbjct: 639 LSFLLGVSCAIVP--FANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 696
Query: 61 PLFWILISDCLGRP--------------------EDSLVMNQASLECGVFRSE---SYKA 97
PLF L S+CL + EDS+VMN+ASLE G+FRSE SYKA
Sbjct: 697 PLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 756
Query: 98 EVDNKDIQVKSRPSDDMLNFGKIQSK--------------------SGDIVIGKYAEIGA 137
EVD KD + K + D+++ FGK SK +GDIVIG+ E GA
Sbjct: 757 EVDTKDSE-KRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGA 815
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
DHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ V S CLGDKFSSMHGQKGVLG
Sbjct: 816 DHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ----VRSPCLGDKFSSMHGQKGVLG 871
Query: 198 FLE--------------------------QTPAQLLEAALGKG-------------ACDG 218
+LE QTP QLLEAAL KG A
Sbjct: 872 YLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTK 931
Query: 219 LMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLFCLFECPMDW 275
L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 932 LTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE-------------------- 971
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
++RSLIF TFYQ+ +HMSE+KVKFRNTG PLT +PVADRKRFGGI FGEM+
Sbjct: 972 -----MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEME 1026
Query: 336 CDCLIAHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSA 376
DCLIAHGAS NLHERL KCK ANVI+R + GPYCR+C S+
Sbjct: 1027 RDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASS 1086
Query: 377 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 409
D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1087 DHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1118
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 226/510 (44%), Gaps = 127/510 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN ++R+DT+ L+YPQ+P
Sbjct: 755 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKP 811
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
L + L EDS++MNQ+S++ G+FRS ++ +D
Sbjct: 812 LATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDL 871
Query: 101 -----NKDIQVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
K ++ +PS DD L I+ DI+IGK I D
Sbjct: 872 EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDT 931
Query: 139 --------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VLL++N DG F V +R + +GD
Sbjct: 932 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT----KVPQIGD 987
Query: 185 KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
KF+S HGQKG +G F Q T A L+E L K +
Sbjct: 988 KFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLS 1047
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
GL A+PF T VS+LL G ++ G ++ + L
Sbjct: 1048 GLEGDASPFTDVTAEA--------VSKLLREHGYQSRGFEVMYHGHTGKKLM-------- 1091
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1092 ------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1145
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+G L ERL + A +VI + + CR C + +I + ++
Sbjct: 1146 CMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHI 1205
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLSGVSM 414
PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1206 PYAAKLLFQEL-MAMNISPRLYTERSGVSV 1234
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 212/501 (42%), Gaps = 124/501 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 709 SLILGVCASIIPFPDHNQSPRN--TYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 766 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 825
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
VK RP DD L + D++IGK I D
Sbjct: 826 EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 885
Query: 139 ------------HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
HSI L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 886 AQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 941
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 942 SSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1001
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T I S+ L+ G + G ++ + L
Sbjct: 1002 EGDATPFTDVTVDNI--------SKALHKCGYQMRGFERMYNGHTGRPL----------- 1042
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1043 ---TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1099
Query: 340 IAHGASGNLHERLKCKNVANVIQ--RVVG----------GPYCRICNSADDIIKANVPYG 387
IAHGA+ L ERL ++ A + V G CR C + DI++ +PY
Sbjct: 1100 IAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1159
Query: 388 AKLLSQELSFSMGITLKFDTQ 408
KLL QEL SM I + T+
Sbjct: 1160 CKLLFQEL-MSMAIAPRMLTK 1179
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 213/503 (42%), Gaps = 128/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN R+DTL L+YPQ+P
Sbjct: 708 SLILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 764
Query: 62 LFW------------------ILISDCLG--RPEDSLVMNQASLECGVFRS---ESYKAE 98
L I+ C EDS++MNQ+S++ G FRS SY+ E
Sbjct: 765 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 824
Query: 99 VDNKDIQVKS---RPS----------------DDMLNFGKIQSKSGDIVIGKYAEIG--- 136
VK RP DD L + D++IGK I
Sbjct: 825 EKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 884
Query: 137 ----------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
DHS L+H+E G+V +VLL++N DG F V +R V +GDKF
Sbjct: 885 AQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKF 940
Query: 187 SSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD-GL 219
SS HGQKG +G E P QL+E +GK A G
Sbjct: 941 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1000
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
ATPF T +S+ L+ G + G ++ + L
Sbjct: 1001 EGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRRL----------- 1041
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+
Sbjct: 1042 ---SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNSADDIIKANVP 385
IAHGA+ L ERL +C +A I + + CR C + DI++ ++P
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANLKKNSFECRGCKNKTDIVQVHIP 1156
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y KLL QEL +M I + T+
Sbjct: 1157 YACKLLFQEL-MAMAIAPRMLTK 1178
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 746 SMILGVAASIIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 802
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 803 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 862
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P DD L ++ D++IGK I D
Sbjct: 863 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 922
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 923 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT----KIPQIGD 978
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1038
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1039 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1082
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1083 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A VI ++ + C+ C++ DI + ++
Sbjct: 1137 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1196
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1197 PYAAKLLFQEL-MAMNITPRLYTDRS 1221
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 218/506 (43%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ IIP + + YQS QA+G TN N R+DT+ L+YPQ+P
Sbjct: 745 SMILGVAASIIPFPDHNQSPRN--TYQS-AMGKQAMGVFLTNYNFRMDTMANILYYPQKP 801
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ+S++ G+FRS +++ +D
Sbjct: 802 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 861
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ + +P +D L ++ DI+IGK I D
Sbjct: 862 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDE 921
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +VL+++N DG F V +R + +GD
Sbjct: 922 EELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTT----KVPQIGD 977
Query: 185 KFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG +G E P A L+E L K A
Sbjct: 978 KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1037
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T +S+LL G ++ G ++ + L
Sbjct: 1038 GNEGDASPFTDIT--------VEGISKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1081
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1082 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1135
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A +VI ++ + C+ C++ DI + ++
Sbjct: 1136 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHI 1195
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M IT + T S
Sbjct: 1196 PYAAKLLFQEL-MAMNITPRLYTDRS 1220
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 217/506 (42%), Gaps = 127/506 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG++ +IP + + YQS QA+G TN N+R+DT+ L+YPQ+P
Sbjct: 744 SMILGVAASVIPFPDHNQSPRN--TYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKP 800
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRS--------- 92
L + L EDS++MNQ+S++ G+FRS
Sbjct: 801 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRSYMDQ 860
Query: 93 ---------ESYKAEVDNKDIQVK----SRPSDDMLNFGKIQSKSGDIVIGKYAEIGAD- 138
ES++ +++K + DD L ++ DI+IGK I D
Sbjct: 861 EKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTPIPPDA 920
Query: 139 ---------HSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
HS + L+ TE G+V +VL+++N +G F V +R + +GD
Sbjct: 921 EELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT----KVPQIGD 976
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 977 KFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1036
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G A+PF T I S+LL G ++ G ++ + L
Sbjct: 1037 GNEGDASPFTDITVDGI--------SKLLREHGYQSRGFEVMYNGHTGKKLM-------- 1080
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1081 ------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134
Query: 338 CLIAHGASGNLHERLKCKNVA------------NVIQRVVGGPY-CRICNSADDIIKANV 384
C+IAHGA+ L ERL + A V+ ++ + CR C + DI + ++
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHI 1194
Query: 385 PYGAKLLSQELSFSMGITLKFDTQLS 410
PY AKLL QEL +M I + T S
Sbjct: 1195 PYAAKLLFQEL-MAMNIAPRLYTDRS 1219
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 215/506 (42%), Gaps = 132/506 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ C IIP + + YQ+ QA+G TN +R+DT+ LFYPQ+P
Sbjct: 697 SMILGICCSIIPFPDHNQSPRN--TYQA-AMGKQAMGVYITNYQLRMDTMAHVLFYPQKP 753
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++NQ++++ G+FRS Y+A D
Sbjct: 754 LVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE 813
Query: 102 KDIQ------VKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
+ Q V +P DD L ++ DI+IGK +
Sbjct: 814 QKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSD 873
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+L+++ +G F V +R + +GD
Sbjct: 874 DDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRS----MRVPQIGD 929
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KFSS HGQKG G T QL+E LGK A
Sbjct: 930 KFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSAST 989
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T I SQ L+ IG + +G ++ + MD
Sbjct: 990 GDEGDATPFTDVTVEAI--------SQALHKIGYQMTGHEVMYNGHT-----GRRMD--- 1033
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ IF T+YQ+ HM +DK+ R+ G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1034 ------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERD 1087
Query: 338 CLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDIIKA 382
C+I+HGA+ L ERL ++ +AN+ + CR C + I +
Sbjct: 1088 CMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFE---CRRCKNKTQISQI 1144
Query: 383 NVPYGAKLLSQELSFSMGITLKFDTQ 408
+PY AKLL QEL SM I + TQ
Sbjct: 1145 RMPYAAKLLFQEL-MSMSIAPRMFTQ 1169
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 207/503 (41%), Gaps = 126/503 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN +R+DT+ L+YPQ+P
Sbjct: 735 AMILGILASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYLTNYQVRMDTMANILYYPQKP 791
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQAS++ G+FRS Y+ D
Sbjct: 792 LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQ 851
Query: 102 KD------IQVKSRP----------------SDDMLNFGKIQSKSGDIVIGKYAEIGADH 139
+ ++ RP DD L + DI+IGK A I DH
Sbjct: 852 EKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDH 911
Query: 140 ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
S L+ TE G+V +V++++N +G F V +R + +GD
Sbjct: 912 EELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRST----RIPQIGD 967
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG +G T A L+E L K A
Sbjct: 968 KFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALS 1027
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G ATPF T VS+LL G ++ G ++ + L
Sbjct: 1028 GFEGDATPFTDVTVEA--------VSKLLRSHGFQSRGFEVMYHGHTGRKLV-------- 1071
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ +F T+YQ+ H+ +DK+ R G Q LT +PV R R GG+ FGEM+ D
Sbjct: 1072 ------AQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125
Query: 338 CLIAHGASGNLHERL-KCKNVANVIQRVVGGPY-----------CRICNSADDIIKANVP 385
C I+HG S L ERL C + VI + G CR C + + +P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185
Query: 386 YGAKLLSQELSFSMGITLKFDTQ 408
Y AKLL QEL SM I + T+
Sbjct: 1186 YAAKLLFQEL-MSMNIAPRLFTK 1207
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N ++R DT L +
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYASNYDLRTDTRAHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ P+ I D G RP ED+L++N+ASLE G+ RS S
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 95 YKA-------------EVDNKDIQVKSRPSD------DMLNFGKIQSKSGDIVIGK---- 131
Y+A E+ K ++ SD D + + + SGD++IGK
Sbjct: 242 YEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPP 301
Query: 132 -----------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
AE + S+ ++H E+G+V VLL+ +G A + +R+
Sbjct: 302 RFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQ----RQP 357
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKG 214
LGDKF+S HGQKGV+G + E P Q+LE GK
Sbjct: 358 ELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKA 417
Query: 215 AC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
AC +G TPF T + + + + L G +G+ ++
Sbjct: 418 ACMEGRRVDGTPF--------TGEDEDDIKEALRANGFETAGVESLYNGITGE------- 462
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + IF + +YQ+ HM+ DKV R+ G Q LT +P R R GG+ FGE
Sbjct: 463 -------RIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGE 515
Query: 334 MKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDII 380
M+ DCLIAHGA+ L ERL C +A V ++ YC IC ++
Sbjct: 516 MERDCLIAHGAALALKERLLDESDKYEALVCADCGMIA-VYDKIRDKKYCPICEDSES-F 573
Query: 381 KANVPYGAKLLSQEL 395
V Y KLL EL
Sbjct: 574 PVEVSYAFKLLLDEL 588
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 139/496 (28%), Positives = 214/496 (43%), Gaps = 137/496 (27%)
Query: 2 SFLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFY 57
S +LG+ GIIP +H + TM+ + + QA+G +N N+R DT L +
Sbjct: 129 STMLGICAGIIPFANHNSSPRNTMEAGM-------TKQALGLYASNYNLRTDTRAHLLHH 181
Query: 58 PQRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ES 94
PQ P+ I D G RP ED+L++N+ASLE G+ RS S
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 95 YKA-------------EVDNKDIQ-------VKSRPSDDMLNFGKIQSKSGDIVIGK--- 131
Y+A E+ K ++ + D ++N + + SGD++IGK
Sbjct: 242 YEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIIN-PETEVSSGDVLIGKTSP 300
Query: 132 ------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
AE + S+ ++H E G+V VLL+ +G A + +R+
Sbjct: 301 PRFLEEIDEFGTVAERRRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQR---QP 357
Query: 180 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 213
+GDKF+S HGQKGV+G + E P Q+LE GK
Sbjct: 358 EFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGK 417
Query: 214 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
AC +G TPF T + + + + L G ++G+ ++
Sbjct: 418 AACMEGRRVDGTPF--------TGEEEKDLKEALKANGFESAGVETLY------------ 457
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+ I + + IF + +YQ+ HM+ D++ R+ G Q LT +P R R GG+ FG
Sbjct: 458 -NGITG-ERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFG 515
Query: 333 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 379
EM+ DCLIAHGA+ L ERL +C +A + ++ YC IC ++
Sbjct: 516 EMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIA-IYDKIRDKKYCPICEDSES- 573
Query: 380 IKANVPYGAKLLSQEL 395
+ Y KLL EL
Sbjct: 574 FPVEISYAFKLLLDEL 589
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 209/500 (41%), Gaps = 136/500 (27%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IP + + YQS QA+G TN +R+DTL LFYPQ+P
Sbjct: 672 ALILGICASTIPFPDHNQSPRN--TYQS-AMGKQAMGIYATNFLLRMDTLSNILFYPQKP 728
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS++MNQ++++ G+FRS Y+ D
Sbjct: 729 LVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQ 788
Query: 102 KDIQVKSRPSDDM---------------LNFGKIQSKS----------GDIVIGKYAEI- 135
+ + SRP + LN+ K+ D++IGK I
Sbjct: 789 ESM---SRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPIL 845
Query: 136 -------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL 182
D S ++ TE G+V V+++ N DG F+ V +R +
Sbjct: 846 DPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSG----RIPQM 900
Query: 183 GDKFSSMHGQKGVLGF-LEQ-------------------------TPAQLLEAALGK-GA 215
GDKF+S H QKG +G L Q T L+E LGK A
Sbjct: 901 GDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSA 960
Query: 216 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDW 275
G ATPF+ T I+ + +S+ G + G+ ++ L
Sbjct: 961 MSGEEGDATPFSGVTVDGISSRLKSY--------GFQQRGLEVMYNGMTGRKL------- 1005
Query: 276 IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 335
R+ +F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1006 -------RAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1058
Query: 336 CDCLIAHGASGNLHERLKCKNVANVIQRVV---------GGPY---CRICNSADDIIKAN 383
DC+I+HGAS L ERL +V++ V GG C+ CN+ ++
Sbjct: 1059 RDCIISHGASAFLKERL--MDVSDAYSCYVCDFCGLLAMGGSKVNECKGCNNTTNVSMVE 1116
Query: 384 VPYGAKLLSQELSFSMGITL 403
+PY KLL QEL MG+ +
Sbjct: 1117 IPYAFKLLIQEL---MGMNI 1133
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 210/504 (41%), Gaps = 133/504 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TTN ++R+DTL L+YPQ+P
Sbjct: 707 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP 763
Query: 62 LFWI--------------------LISDCLGRPEDSLVMNQASLECGVFRSESYK----- 96
L ++S EDS++MN ++++ G+FRS Y+
Sbjct: 764 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 823
Query: 97 -AEVDNKDIQVKSRPS-----------------DDMLNFGKIQSKSGDIVIGKYAEI--- 135
A +DN + ++ +P+ D +++ G ++ D++IGK +
Sbjct: 824 EANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPG-MRVSGDDVIIGKTVALPDI 882
Query: 136 ------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
D S L+ +E G+V +V+LS N DG F + +R V +G
Sbjct: 883 DDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRS----VRLPQIG 938
Query: 184 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GAC 216
DKF+S HGQKG +G + E P L+E GK A
Sbjct: 939 DKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSAN 998
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI 276
G + ATPF + + +S LL G G ++ + L
Sbjct: 999 KGEIGDATPFNDTV-------NVQKISGLLCEYGYHLRGNEVMYNGHTGKKL-------- 1043
Query: 277 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 336
+ IF T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+
Sbjct: 1044 ------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMER 1097
Query: 337 DCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIK 381
DC I+HGA+ L ERL C N VAN+ C+ C + +
Sbjct: 1098 DCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANL---RTNSFECKACRNKTQVSA 1154
Query: 382 ANVPYGAKLLSQELSFSMGITLKF 405
+PY KLL QEL SM I +
Sbjct: 1155 VRIPYACKLLFQEL-MSMSIAPRL 1177
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 205/500 (41%), Gaps = 125/500 (25%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS QA+G TN ++R+DTL L+YPQ+P
Sbjct: 701 SMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 757
Query: 62 LFW-------------------ILISDCLG-RPEDSLVMNQASLECGVFRS---ESYKAE 98
L + I+ G EDS++MN+++++ G FRS SYK +
Sbjct: 758 LVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQ 817
Query: 99 VDNKDI---QVKSRPS----------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
K +V +P+ DD L ++ D++IGK +
Sbjct: 818 ESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENE 877
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+ +E G+V +V+++ N +G F + +R V +GD
Sbjct: 878 DELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRS----VRIPQIGD 933
Query: 185 KFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGK-GACD 217
KF+S HGQKG G E P L+E GK A
Sbjct: 934 KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANK 993
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S LL+ G G ++ +
Sbjct: 994 GEIGDATPFNDAV-------NVQKISNLLSDYGYHLRGNEVLYNGFTGR----------- 1035
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1036 ---KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERD 1092
Query: 338 CLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVP 385
C IAHGA+ L ERL +V N+ I Y CR C + I +P
Sbjct: 1093 CQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Query: 386 YGAKLLSQELSFSMGITLKF 405
Y KLL QEL SM I +
Sbjct: 1153 YACKLLFQEL-MSMSIAPRM 1171
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 201/503 (39%), Gaps = 131/503 (26%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + YQS QA+G TN ++R+DTL L+YP +P
Sbjct: 703 AMILGVCASIIPFPDHNQSPRN--TYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKP 759
Query: 62 LFWILISDCLG--------------------RPEDSLVMNQASLECGVFRSESYKAEVDN 101
L + L EDS+++N +++E G FRS Y++ D+
Sbjct: 760 LVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDS 819
Query: 102 KDIQVKSRPS----------------------DDMLNFGKIQSKSGDIVIGKYAEIGA-- 137
++ +V + DD + I+ D+VIGK +
Sbjct: 820 ENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEND 879
Query: 138 -------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
D S L+++E G+V +V+L+ N +G F + +R V +GD
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGD 935
Query: 185 KFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACD 217
KF+S HGQKG G T L+E GK G+
Sbjct: 936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
G + ATPF + + +S L G G ++ +
Sbjct: 996 GEIGDATPFNDAV-------NVQKISTFLQEYGYHLRGNEVMYNGHTGRK---------- 1038
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ D
Sbjct: 1039 ----INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1094
Query: 338 CLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKA 382
C I+HGA+ L ERL C +AN+ C+ C + I +
Sbjct: 1095 CQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQV 1151
Query: 383 NVPYGAKLLSQELSFSMGITLKF 405
+PY AKLL QEL SM I +
Sbjct: 1152 RLPYAAKLLFQEL-MSMNIAPRL 1173
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 194/461 (42%), Gaps = 118/461 (25%)
Query: 35 QAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLG---RP----------------- 74
Q++G N IRVDT + YPQ PL I +G RP
Sbjct: 676 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNM 735
Query: 75 EDSLVMNQASLECGVFRS---ESYKAE--------------------------------- 98
ED+++MN+AS+E G+ RS +Y+AE
Sbjct: 736 EDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRHLDE 795
Query: 99 ---------VDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTER 148
V+ KD+ V ++ P F + QS G I++ + E S+ ++ +E
Sbjct: 796 DGIIFPESKVNGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SLTVRPSET 847
Query: 149 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLE 208
G+V KV+++ DG V+ R + GDKF+S HGQKGV+G + P + +
Sbjct: 848 GVVDKVIITETGDGTKLVKVTTRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMP 901
Query: 209 AALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------- 259
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 902 WTESGIVPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLR 957
Query: 260 -------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 312
FKH ++ D I L + +F + +YQ+ HM DK+ R+ G
Sbjct: 958 KELEELGFKHSGREVMY----DGITGRRL-EADVFVGVIYYQRLHHMVADKMHARSRGPV 1012
Query: 313 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI- 361
Q LT +P R R GG+ FGEM+ D LI HGA+ L ERL C+N ++
Sbjct: 1013 QVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1072
Query: 362 -QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 401
+ G YC +C + I K + Y KLL EL +MGI
Sbjct: 1073 EDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELK-AMGI 1112
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 203/491 (41%), Gaps = 106/491 (21%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + Q++G P N R+DT L YPQ PL
Sbjct: 132 ILGIGAGVAPYPEHNSAPR---ITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS------ESYK- 96
+ LG RP ED+ V+N+ASLE G+ RS ES++
Sbjct: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEK 248
Query: 97 ----AEVDNKDIQVKS----RPSDDMLNFG-------KIQSKSGDIVIGKYA-------- 133
++D ++ K R + N G + + +SGD+++GK +
Sbjct: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQ 308
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G+V V+LS +G V +R + GDKF
Sbjct: 309 EITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRD----LRVPEFGDKF 364
Query: 187 SSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQ 239
+S HGQKGV+G + E P + + + A M+ G V + + +
Sbjct: 365 ASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECR 424
Query: 240 SFVSQLLNCIGA---RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL---IFTWITFY 293
+ + G R++ + F H +++ R L IF + +Y
Sbjct: 425 RVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTG--------RKLECEIFVGVAYY 476
Query: 294 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL- 352
Q+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L+AHGA+ L ERL
Sbjct: 477 QKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKERLL 536
Query: 353 ------------KCKNVANVIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQE 394
KC +A + G +C +C ++D I + Y KLL E
Sbjct: 537 DESDPHEDYVCAKCGEIA-IFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDE 595
Query: 395 LSFSMGITLKF 405
L SMGI K
Sbjct: 596 LK-SMGIDPKL 605
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 194/498 (38%), Gaps = 129/498 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG G+IP + + YQ QAIG N R+DTLL + YPQ+P+
Sbjct: 693 ILGAVAGLIPYPHHNQSPRN--TYQC-AMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMV 749
Query: 64 WILISDCLGRP--------------------EDSLVMNQASLE-----CGVFRSES---- 94
+ +G ED+LV+N++S++ C VF S
Sbjct: 750 KTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVR 809
Query: 95 -YKAEVDNKDIQVKSRPS------------DDMLNFGKIQSKSGDIVIGKYAEIGA-DHS 140
Y ++ + P DD L + + G I + K A D+S
Sbjct: 810 KYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNS 869
Query: 141 IKLKHT-----------------ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLG 183
I L HT E G + KV+L++ D + V +RQ+ LG
Sbjct: 870 ITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQT----RRPELG 925
Query: 184 DKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GAC 216
DKFSS HGQKGV G + Q T +++E GK G
Sbjct: 926 DKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVL 985
Query: 217 DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMD 274
G + Y T F G + + + V N G SGIT
Sbjct: 986 RGTLEYGTCFG---GTKVEDASRILVEHGYNYSGKDMLTSGITG---------------- 1026
Query: 275 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 334
+ + IF +YQ+ HM DK+ R G LT +P R R GG+ GEM
Sbjct: 1027 -----ETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1081
Query: 335 KCDCLIAHGASGNLHERLKCKNVANVIQRVVG-------GPYCRICNSADDIIKANVPYG 387
+ DCLIA+GAS L ERL + A + V G +C C S +++K +PY
Sbjct: 1082 ERDCLIAYGASQLLLERLMISSDACDVD-VCGQCGLLGYKGWCNSCQSTREVVKMTIPYA 1140
Query: 388 AKLLSQELSFSMGITLKF 405
AKLL QEL SM I +
Sbjct: 1141 AKLLFQEL-LSMNIVPRL 1157
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 199/510 (39%), Gaps = 141/510 (27%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P N IR DT L YP
Sbjct: 133 LIFGIGAGMIPYPEHNASPRITMGAGMMKQS-------LGLPAANYRIRPDTRQHLLHYP 185
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q+ + ++ +G RP ED+LVMN+ S+E + RS ++
Sbjct: 186 QKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTY 245
Query: 98 ---------------EVDNKDIQ------VKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ D++ + DD L + + +++GK +
Sbjct: 246 EGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPR 305
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG A VS+R
Sbjct: 306 FLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIP 361
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
LGDKF+S HGQKGV+G L E P +LE GK
Sbjct: 362 ELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKA 421
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
G+ DG TPF T + + + L G ++SG ++
Sbjct: 422 GSLDGRSVDGTPF--------TGEGEDEIRGTLEDRGFKSSGKEVMYSG----------- 462
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + IF FY + HM +K+ R+ G Q LT +P R R GG+ GE
Sbjct: 463 ---VSGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGE 519
Query: 334 MKCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADD 378
M+ D +I HGA+ L ERL C N V N QR V YC C D
Sbjct: 520 MERDTVIGHGAAMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRV---YCPNCEEETD 576
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
+ + Y KLL E+ ++GI + + +
Sbjct: 577 VHSIEMSYAFKLLLDEMK-ALGIAPRLELE 605
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 199/510 (39%), Gaps = 141/510 (27%)
Query: 3 FLLGLSCGIIP--SHLQT--MTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYP 58
+ G+ G+IP H + +TM ++ QS +G P N IR DT L YP
Sbjct: 133 LIFGIGAGMIPYPEHNASPRITMGAGMMKQS-------LGLPAANYRIRPDTRQHLLHYP 185
Query: 59 QRPLFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYKA- 97
Q+ + ++ +G RP ED+LVMN+ S+E + RS ++
Sbjct: 186 QKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTY 245
Query: 98 ---------------EVDNKDIQ------VKSRPSDDMLNFGKIQSKSGDIVIGKYA--- 133
E+ D++ + DD L + + +++GK +
Sbjct: 246 EGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPR 305
Query: 134 ------EIGA-------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSA 180
++G + S+ ++ E G+V V L +DG A VS+R
Sbjct: 306 FLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIP 361
Query: 181 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK- 213
LGDKF+S HGQKGV+G L E P +LE GK
Sbjct: 362 ELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKA 421
Query: 214 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 273
G+ DG TPF T + + + L G ++SG ++
Sbjct: 422 GSLDGRSVDGTPF--------TGEGEDEIRGTLEDRGFKSSGKEVMYSG----------- 462
Query: 274 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 333
+ + IF FY + HM +K+ R+ G Q LT +P R R GG+ GE
Sbjct: 463 ---VSGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGE 519
Query: 334 MKCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADD 378
M+ D +I HGA+ L ERL C N V N QR V YC C D
Sbjct: 520 MERDTVIGHGAAMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRV---YCPNCEEETD 576
Query: 379 IIKANVPYGAKLLSQELSFSMGITLKFDTQ 408
+ + Y KLL E+ ++GI + + +
Sbjct: 577 VHSIEMSYAFKLLLDEMK-ALGIAPRLELE 605
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/496 (25%), Positives = 202/496 (40%), Gaps = 133/496 (26%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+LG+ G+ P + + + Q++G P +N R+DT L YPQ P+
Sbjct: 136 ILGIGAGVAPYPEHNSAPR---ITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIV 192
Query: 64 WILISDCLG---RP-----------------EDSLVMNQASLECGVFRS---ESYKA--- 97
+ LG RP ED++V N+++++ G+ RS +Y A
Sbjct: 193 RTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACER 252
Query: 98 ----------EVDNKDIQ-VKSRP-----SDDMLNFGKIQSKSGDIVIGKYA-------- 133
E+ +K ++ +S +D + + K GD+++GK +
Sbjct: 253 RYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEH 312
Query: 134 EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 186
EI D S+ ++H E G + KV+L+ +G V +R + LGDKF
Sbjct: 313 EITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRD----LRIPELGDKF 368
Query: 187 SSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACDGL 219
+S HGQKGV+G F E T QLLE GK GA +G
Sbjct: 369 ASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGR 428
Query: 220 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 279
T F+ + + + + L +G FKH+ +++ +
Sbjct: 429 RIDGTIFSG--------EKEWDLRKALEALG---------FKHHGKEVMYDGKTGKKFEV 471
Query: 280 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
I+ I +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+ D L
Sbjct: 472 E-----IYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVL 526
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKAN--- 383
I HGA+ L ERL KC + A ++ G YC IC +++ +
Sbjct: 527 IGHGAAMLLKERLMDESDPYDICICSKCGDFA-ILDYKRGLKYCPICGEIENLYSSKKIP 585
Query: 384 ---VPYGAKLLSQELS 396
+PY KLL EL
Sbjct: 586 FVRIPYAFKLLLDELK 601
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 198/504 (39%), Gaps = 140/504 (27%)
Query: 2 SFLLGLSCGIIP--SHLQ----TMT--MQGWVLYQSQKHSP----------QAIGFPTTN 43
SFL I P +HL+ TM + G + Y SP QAIG N
Sbjct: 1121 SFLAWREAAIQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 1180
Query: 44 PNIRVDTLLQQLFYPQRPLFWILISDCLG--------------------RPEDSLVMNQA 83
R+DTLL L + QRPL D L ED+LVMN+A
Sbjct: 1181 QLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKA 1240
Query: 84 SLECGVFRSESYKAEV--------DNKDIQVKSRPSD-DMLNFGKIQS----------KS 124
SL+ G R K +V D D P+D +G + S +
Sbjct: 1241 SLDRGFGRCIVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQK 1300
Query: 125 GDIVIGKYA-----------EIGADHSIK-----LKHTERGLVLKVLLSSNDDGKNFAVV 168
G I++ KY+ E+ D + K K+ + KVLL+S DD + +
Sbjct: 1301 GQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQ----L 1356
Query: 169 SIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------------- 203
I+ + LGDKFSS HGQKGV G + E P
Sbjct: 1357 LIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMT 1416
Query: 204 -AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 262
+++E GK G++S F T GG E +S++L + G ++ K
Sbjct: 1417 IGKMIELLAGKA---GVLSGKFGFGTCFGGDRVEN----ISKVL-----ISKGFSYGGKD 1464
Query: 263 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 322
Y + P+ C IF FYQ+ HM DK+ R G LT +P
Sbjct: 1465 YVTSGVTGEPL-----ACF----IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEG 1515
Query: 323 RKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP-YCR 371
R R GG+ GEM+ DCLI +GAS + ERL CKN +G YC+
Sbjct: 1516 RARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTVYACKNCG-----FLGYEGYCQ 1570
Query: 372 ICNSADDIIKANVPYGAKLLSQEL 395
C S+ DI +PY KLL QEL
Sbjct: 1571 YCKSSVDISTIQIPYACKLLFQEL 1594
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 126/480 (26%), Positives = 198/480 (41%), Gaps = 97/480 (20%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S ++G+ G IP + + + K Q++G P +N R DT + +PQ P
Sbjct: 129 SLIVGICTGSIPYAEHNASPRNTMGAAMIK---QSLGIPYSNLAWRTDTRGHLMQHPQVP 185
Query: 62 L-------------------FWILISDCLG-RPEDSLVMNQASLECGVFRSESYKA---- 97
+ F + + G ED+L+MN+ S+E G+ RS Y+
Sbjct: 186 IVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYESE 245
Query: 98 ------------EVDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGKYA------ 133
E+ DI + + +D L F + + D++IG+ +
Sbjct: 246 EMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRFLE 305
Query: 134 ---EIG------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
E+G + S+ ++ E+G+V V L ++ G A V +R + LGD
Sbjct: 306 EPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRD----LRIPELGD 361
Query: 185 KFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVS 243
KF+S HGQKGV+G L P + + D +++ +A P + G V+ +
Sbjct: 362 KFASRHGQKGVVGLL--VPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVL----EMIGG 415
Query: 244 QLLNCIGARNSGITF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 292
++ + G R G F + K+ F E D I + IF + +
Sbjct: 416 KVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVD-IFVGVIY 474
Query: 293 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L +RL
Sbjct: 475 YQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALLLKDRL 534
Query: 353 -------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
C +VA R YC IC+ +I K + Y KLL EL M
Sbjct: 535 LEESDKVEVWVCGNCGHVATYDYR-RNTAYCHICDDESNIHKVEMSYAFKLLLDELKSMM 593
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 213/515 (41%), Gaps = 141/515 (27%)
Query: 2 SFLLGLSCGIIPS--HLQTM------TMQGWVLYQSQKHSP----------QAIGFPTTN 43
S++ I+PS HL+ + G + Y SP QAIG N
Sbjct: 657 SYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN 716
Query: 44 PNIRVDTLLQQLFYPQRPLF---WILISDCLGRP-----------------EDSLVMNQA 83
R+DTLL + YPQ+P+ I + D P ED+LV+N++
Sbjct: 717 QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKS 776
Query: 84 SLECGVFRSESYKAEVD--------NKDI--------------QVKSRPSDDMLNFGKIQ 121
S++ G R E+ + +DI Q +S D + G ++
Sbjct: 777 SIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVG-MK 835
Query: 122 SKSGDIVIGKYAEIGA-------DHSIKLKHTERGLVLK---------VLLSSNDDGKNF 165
+SG I I K + + +++ ++ E ++ + V++S +D+ +
Sbjct: 836 VQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL 895
Query: 166 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 199
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 896 IKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPS 951
Query: 200 EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGI 256
T +++E GK G +G + Y T F G + + + V Q N G SGI
Sbjct: 952 RMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGI 1008
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
T EC +++ IF +YQ+ HM DK+ R G LT
Sbjct: 1009 TG-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1047
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYC 370
+P R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C
Sbjct: 1048 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWC 1107
Query: 371 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/499 (25%), Positives = 193/499 (38%), Gaps = 124/499 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IIP + + YQS + Q++G +N IR DT L YPQ P
Sbjct: 643 SAILGIIASIIPYPEHNQSPRN--TYQSA-MAKQSLGLYASNYQIRTDTRAHLLHYPQMP 699
Query: 62 LFWILISDCLG---RP-----------------EDSLVMNQASLECGVFRSESYK----- 96
L + +G RP EDS++MN++S+E G++RS ++
Sbjct: 700 LVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTE 759
Query: 97 ---------AEVDNKDIQVKSRPSDDMLNF--------GKIQSKSGDIVIGKYA------ 133
++ + VK D +++ K GD++IGK +
Sbjct: 760 EVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQ 819
Query: 134 --------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
+ D SI +H E G+V VL++ +G V +R + +GDK
Sbjct: 820 EFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRD----LRIPEIGDK 875
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
F++ HGQKGV+G L T Q++EA GK A G
Sbjct: 876 FATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSG 935
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
ATPF T + Q ++L +G ++ L
Sbjct: 936 KPVDATPFLE------TPKLQEMQKEILK-LGHLPDSTEVVYDGRTGQKL---------- 978
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+S I I +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+ DC
Sbjct: 979 ----KSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDC 1034
Query: 339 LIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPY 386
LI G + + +RL + V+ R C + + V Y
Sbjct: 1035 LIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSY 1094
Query: 387 GAKLLSQELSFSMGITLKF 405
KLL QEL SM I+ +
Sbjct: 1095 AFKLLIQEL-MSMVISPRL 1112
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 183/473 (38%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + DD L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGDDSLVFGVKPGDPR 802
Query: 120 IQSK---SGDIVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K G IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F V + +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCVCV--TVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/483 (25%), Positives = 196/483 (40%), Gaps = 91/483 (18%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
+ +LG+ IIP + + + K Q++GF +N IR DT L YPQ P
Sbjct: 719 AMILGVVASIIPYPEHNSSPRITIASAMAK---QSLGFAQSNVRIRPDTRGHLLHYPQVP 775
Query: 62 LFWILISDCL---GRP-----------------EDSLVMNQASLECGVFRS---ESYKAE 98
L + D + RP +D+LV+N+A++E G+ RS +Y AE
Sbjct: 776 LVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAE 835
Query: 99 -------------VDNKDI------QVKSRPSDDMLNFGKIQSKSGDIVIGK-----YAE 134
+ DI + D + F + + D++IGK + E
Sbjct: 836 ERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLE 895
Query: 135 IGADH---------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
G + S+ ++ E G V V L+ ++ + +R LGDK
Sbjct: 896 EGEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSE----RIPELGDK 951
Query: 186 FSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTG-------GVITEQ 237
F+S HGQKGV+G + P + + D + + ++ P + G G I +
Sbjct: 952 FASRHGQKGVVGLV--VPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASR 1009
Query: 238 HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFI 297
F+ + S + K+ F E D I ++ IF + +YQ+
Sbjct: 1010 TGRFIDGTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGITGRRF-KADIFVGVIYYQKLH 1068
Query: 298 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----- 352
HM K R+ G Q LT +P R R GG+ FGEM+ D LIAHGA+ + +RL
Sbjct: 1069 HMVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSD 1128
Query: 353 ----------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT 402
C ++A + R G C +C + +I Y KL+ EL S+G+
Sbjct: 1129 GTVLYVCGNPSCGHIA-IYDRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDEL-ISLGVV 1186
Query: 403 LKF 405
++
Sbjct: 1187 MRL 1189
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 187/473 (39%), Gaps = 115/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL-------FWILISDCLGRP---- 74
+YQ Q Q +GFP R D L +L PQ PL F+ + + +G
Sbjct: 686 MYQCQMGK-QTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------K 119
ED++++N+AS E G YK+E D+ K + +D L FG +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEF--IDLSEKFKQGEDNLVFGVKPGDPR 802
Query: 120 IQSKSGD---IVIGKYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK- 163
+ K D IG E G + + K E +V + + SND G
Sbjct: 803 VMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSG 862
Query: 164 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 203
F + I +V + + +GDKF+S HGQKG+L L E P
Sbjct: 863 KFKCICI--TVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Query: 204 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 256
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGT 976
Query: 257 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 316
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 977 E---RLYSGISGMELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022
Query: 317 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1023 NQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1083 KPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 199/501 (39%), Gaps = 138/501 (27%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G++P + + YQ QA+G N R+D+L+ L YP P+
Sbjct: 671 LLGVCAGLVPYPHHNQSPRN--TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYK------- 96
I +++ P ED+L++N+AS++ G R YK
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 97 --------------------------------------AEVDNKDIQV-KSRPSDDMLNF 117
+V NK I + K P+ +N
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMN- 846
Query: 118 GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 177
+Q +S + Y + I K E + +V++S+N + + +RQ+
Sbjct: 847 -PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMVSANAEEDFLIKILLRQT---- 894
Query: 178 HSACLGDKFSSMHGQKGVLGFL-EQ-------------------------TPAQLLEAAL 211
+GDKFSS HGQKGV G + EQ T + LE
Sbjct: 895 RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLG 954
Query: 212 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 270
GK G +G Y T F GG E Q+ + + G ++ K +F +
Sbjct: 955 GKAGLLEGKFHYGTAF----GGSKVEDIQAELER---------HGFNYVGKDFFYSGITG 1001
Query: 271 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 330
P++ + I++ +YQ+ HM +DK+ R G LT +P R R GG+
Sbjct: 1002 TPLE---------AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLR 1052
Query: 331 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 384
GEM+ DCLI++GAS + ERL +V R+ +C C S+ ++ K ++
Sbjct: 1053 LGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISM 1112
Query: 385 PYGAKLLSQELSFSMGITLKF 405
PY KLL QEL+ SM + K
Sbjct: 1113 PYACKLLFQELT-SMNVVPKM 1132
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 182/472 (38%), Gaps = 113/472 (23%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D +V
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 367
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEK 1083
Query: 368 P------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1084 PPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 125/473 (26%), Positives = 182/473 (38%), Gaps = 114/473 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +GFP R D L +L PQ PL + D
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAE------------------VDNKDIQVK 107
ED++++N+AS E G YK+E + D ++
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPRIL 804
Query: 108 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-N 164
+ DD L F + + GD Y + S + K E +V + + SND G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 165 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 203
F V I ++ + + +GDKF+S HGQKG+L L E P
Sbjct: 864 FKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 204 -----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 257
L+E+ GK A GL ATPF S E + ++L G G
Sbjct: 922 SRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE 977
Query: 258 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ Y E D IF + +YQ+ HM DK + R TG+ +T
Sbjct: 978 ---RLYSGISGLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN 1023
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGN-LHERL----------KCKNVANVIQRVVG 366
+P+ R GGI FGEM+ D L+AHG S LH+RL C +++ ++
Sbjct: 1024 QPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1083
Query: 367 GP------------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 407
P C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1084 KPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1135
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 168/423 (39%), Gaps = 106/423 (25%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWILISDCLGRP----------- 74
+YQ Q Q +G P T R D L +L Q P+ + + G
Sbjct: 701 MYQCQM-GKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVA 759
Query: 75 ---------EDSLVMNQASLECGVFRSESYKAEVDNKDIQVKSRPSD------------- 112
ED++++N+++ E G YK E + D+ K R +
Sbjct: 760 VISYTGYDMEDAMILNKSAHERGFGYGTVYKGE--SFDLSQKRRRGEPVVHHFGFAPGST 817
Query: 113 -----------DMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH-TERGLVLKVLLSSND 160
D L F I+ + GD ++ Y E + I+ H TE G V +V L ND
Sbjct: 818 PRREWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGND 877
Query: 161 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ---------- 201
G + I + + S +GDKFSS HGQKG+ + F E
Sbjct: 878 VGDS-ECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINP 936
Query: 202 -------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQS---FVSQLLNCIG 250
T +E+ GK GAC GL +TPF + +EQ + F QL+ G
Sbjct: 937 HAFPSRMTIGMFIESLAGKAGACHGLAQDSTPF------IYSEQQTAADYFGEQLVKA-G 989
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
G PM +++ I+ + +YQ+ HM DK + R TG
Sbjct: 990 YNYHG--------------NEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTG 1035
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYC 370
LT +PV RKR GGI FGEM+ D +I HG S + +RL N ++ Q V C
Sbjct: 1036 PIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRL--MNCSDYAQSWV----C 1089
Query: 371 RIC 373
R C
Sbjct: 1090 RDC 1092
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 124/486 (25%), Positives = 198/486 (40%), Gaps = 117/486 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWI-------------------- 65
+YQ Q + Q +G P N R D + +L +P RP+
Sbjct: 687 MYQCQM-AKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVA 745
Query: 66 LISDCLGRPEDSLVMNQASLECG-----VFRSESYK------------------------ 96
+IS ED++++N++S E G V++S ++
Sbjct: 746 VISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNV 805
Query: 97 AEVDNKDIQVKSRPSDDMLNFGKIQSKSG-DIVIGKYAEIGADHSIKLKHTERGLVLKVL 155
++ D I++++ D + G +K ++ I + GA S K K +E+ + V
Sbjct: 806 SQKDKSKIKLENIDPDGLPKIGSQLTKGKPELCIFDTLKRGAKLS-KFKDSEKARIETVR 864
Query: 156 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKG 214
+ NDD KN +SI ++ +GDKFSS HGQKGVL L Q E +
Sbjct: 865 VCGNDD-KNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPD 923
Query: 215 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-------IFKHY---- 263
+ +A P + G +I QS ++ + G + TF I H+
Sbjct: 924 LI--INPHAFPSRMTMGMLI----QSMAAKSGSLRGEFKTVETFQRYDDNDIVGHFGKEL 977
Query: 264 ----FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 319
F + E I F +++ IF + +YQ+ HM DK + R TG LT +P
Sbjct: 978 LDKGFNYHGNELMYSGI-FGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQP 1036
Query: 320 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP- 368
V RK+ GGI FGEM+ D L+AHGA+ L++RL C+N +++ V
Sbjct: 1037 VKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAI 1096
Query: 369 -----------------------------YCRICNSADDIIKANVPYGAKLLSQELSFSM 399
C++C + K +P+ + L+ EL+ SM
Sbjct: 1097 MKTQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELA-SM 1155
Query: 400 GITLKF 405
GI LKF
Sbjct: 1156 GIKLKF 1161
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 129/490 (26%), Positives = 185/490 (37%), Gaps = 123/490 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G+IP + + K + IG+ N R+DTL+ L YPQ+P+
Sbjct: 664 LLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRN---RIDTLMYLLAYPQKPMV 720
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYKA------ 97
I + D P ED+LV+N+ASL+ G R YK
Sbjct: 721 KTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 780
Query: 98 --------EVDNKDIQVKSR----------------PSDDMLNFGKIQSKSGDIVIGKYA 133
+V + +R P + + N + +KS V
Sbjct: 781 RYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840
Query: 134 EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
E D I K + KV++SSN + + +RQ+ +GDK
Sbjct: 841 EGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDK 896
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
FSS HGQKGV G + T +L+E GK G DG
Sbjct: 897 FSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDG 956
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
Y T F G + + + V G ++ K Y + P++
Sbjct: 957 RFHYGTAFG---GSKVKDVCEDLVRH----------GYNYLGKDYVTSGITGEPLE---- 999
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC
Sbjct: 1000 -----AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1054
Query: 339 LIAHGASGNLHERLKCKNVANVIQRVVG-------GPYCRICNSADDIIKANVPYGAKLL 391
LI +GAS L ERL + A + V G +C C S+ + +PY KLL
Sbjct: 1055 LIGYGASMLLLERLMISSDAFEVD-VCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLL 1113
Query: 392 SQELSFSMGI 401
QEL SM I
Sbjct: 1114 FQELQ-SMNI 1122
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 124/502 (24%), Positives = 205/502 (40%), Gaps = 123/502 (24%)
Query: 2 SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
S +LG+ IP T + YQS + QAIG ++ +++ D + + Y QRP
Sbjct: 718 SCMLGVMAAQIP--FAEHTQSPRLCYQSS-MAKQAIGNIPSH-HVKSDNTTRVMDYVQRP 773
Query: 62 LFWILISDCLGR---------------------PEDSLVMNQASLECGVFRSESYKAE-V 99
L I++ + R EDS+++N+AS++ G+F +YK V
Sbjct: 774 LVTTQIAE-MNRFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIV 832
Query: 100 DNKDIQVKSR--------------------PSDDMLNFGKIQS--KSGDIVIGKY----- 132
+ + I V + P K++S K D+++GK
Sbjct: 833 EERKIGVNEKICMPVASVRRMNNYSLLEDNPESPYFGVVKVKSFVKRNDVLVGKVITKIS 892
Query: 133 ---AEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
DHS + +E G V +++ +S F +V +Q +GDKF S
Sbjct: 893 KDGTRQETDHSTIVSISEEGKVDRIIRTSKKGILMFKIVIAQQK-----RPEIGDKFCSA 947
Query: 190 HGQKGVLG---------FLEQ-----------------TPAQLLEAALGKGACDGLMSY- 222
QKG +G F+E T Q++ + +GK C ++
Sbjct: 948 MAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFG 1007
Query: 223 -ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL 281
A+PF S+ ++ + +L C N T + C W
Sbjct: 1008 DASPFQESSLEKPQDKIHALCKELEECGYNYNGTET-------MMC------GWNG--KK 1052
Query: 282 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ--PLTGRPVADRKRFGGIEFGEMKCDCL 339
+R+ IF +Y + HM DK+ R + + + +T +P+ R GG+ GEM+ DC+
Sbjct: 1053 LRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCM 1112
Query: 340 IAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPY 386
+ HG S LHE++ CK+ V+ + G +C CN DI+K N P+
Sbjct: 1113 LVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVV-KTQNGFFCSGCNGI-DIVKFNCPF 1170
Query: 387 GAKLLSQELSFSMGITLKFDTQ 408
AKL QEL+ +MG L+F +
Sbjct: 1171 AAKLFFQELT-AMGQKLEFKVK 1191
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 185/490 (37%), Gaps = 123/490 (25%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
LLG+ G+IP + + K + IG+ N R+DTL+ L YPQ+P+
Sbjct: 664 LLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRN---RIDTLMYLLAYPQKPMV 720
Query: 64 ---WILISDCLGRP-----------------EDSLVMNQASLECGVFRSESYKA------ 97
I + + P ED+LV+N+ASL+ G R YK
Sbjct: 721 KTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 780
Query: 98 --------EVDNKDIQVKSR----------------PSDDMLNFGKIQSKSGDIVIGKYA 133
+V + +R P + + N + +KS V
Sbjct: 781 RYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840
Query: 134 EIG--------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 185
E D I K + KV++SSN + + +RQ+ +GDK
Sbjct: 841 EGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDK 896
Query: 186 FSSMHGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDG 218
FSS HGQKGV G + T +L+E GK G DG
Sbjct: 897 FSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDG 956
Query: 219 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 278
Y T F G + + + V G ++ K Y + P++
Sbjct: 957 RFHYGTAFG---GSKVKDVCEDLVRH----------GYNYLGKDYVTSGITGEPLE---- 999
Query: 279 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 338
+ I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC
Sbjct: 1000 -----AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1054
Query: 339 LIAHGASGNLHERLKCKNVANVIQRVVG-------GPYCRICNSADDIIKANVPYGAKLL 391
LI +GAS L ERL + A + V G +C C S+ + +PY KLL
Sbjct: 1055 LIGYGASMLLLERLMISSDAFEVD-VCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLL 1113
Query: 392 SQELSFSMGI 401
QEL SM I
Sbjct: 1114 FQELQ-SMNI 1122
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 199/471 (42%), Gaps = 84/471 (17%)
Query: 4 LLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLF 63
+ G+ GIIP +T + + Y S QAIGF + N++ +T+ L YPQ+PL
Sbjct: 685 MFGIVAGIIPFPDRTQSARNC-FYSSM--VKQAIGFVPCH-NLKTETVSHTLNYPQKPLV 740
Query: 64 W------------------ILISDCLG--RPEDSLVMNQASLECGVFRSESYKA----EV 99
I+ C EDS+++N++S++ G+F + +Y E
Sbjct: 741 TTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEK 800
Query: 100 DNKDIQVKSR-PSDDM----LNFGKI----------QSKSGDIVIGKYA-------EIGA 137
N I+ + PS+ + N+G + + K GD++I K E
Sbjct: 801 KNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKNQDEKLV 860
Query: 138 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 197
D S+ ++H E G V +++ + D + VV + + + +GDKF S QKG G
Sbjct: 861 DSSVIVQHGEEGYVDRIVDNVIDGCRIVKVV-----IGQMRTPEIGDKFCSGMAQKGTCG 915
Query: 198 FL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTGGVIT-EQHQSFVSQLLNCI 249
+ E P + + M+ +T G + T + F + N
Sbjct: 916 MIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLYTVNPNPRFRNG--NSF 973
Query: 250 GARNSGITFIFKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVK 305
++ I H+ F+ + + ++S IF T+Y + HM +DK+
Sbjct: 974 QENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMH 1033
Query: 306 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK 355
R+ G L +P R + GG+ FGEM+ DC++ HGA+ L+ER+ CK
Sbjct: 1034 ARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCK 1093
Query: 356 NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 406
+ + C C S ++ + N+PY K L QEL+ MGI K D
Sbjct: 1094 DCGMMSST---SKKCHHCGSI-NVKRCNIPYSCKNLLQELN-GMGIKTKID 1139
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 129/516 (25%), Positives = 196/516 (37%), Gaps = 157/516 (30%)
Query: 11 IIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQR---------- 60
+IP + T + + YQS QAIGFP N + R D L +L YPQ+
Sbjct: 741 VIPFYDHTQSPRN--AYQSNMGK-QAIGFPAVNCSDRYDATLHRLDYPQKSLVDSRSVKR 797
Query: 61 -----------PLFWILISDCLGRPEDSLVMNQASLECGVF-------------RSESYK 96
P+ I+ + + EDS+V+N +SL+ G+F R Y
Sbjct: 798 LGFDEMAHGALPVVAIMTAGGFNQ-EDSVVLNASSLDRGLFSCVTYRTVSCADKRRTKYD 856
Query: 97 AEV-------------------DNKDI----------------QVKSRPSDDMLNFGK-- 119
+EV D+ I + RP+ G
Sbjct: 857 SEVVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRPAGQRTGGGPAG 916
Query: 120 ----IQSKSGDIVIGKYAE--------IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 167
+ +G +++GK + + D S+ +K +E G + +V + + DGK
Sbjct: 917 LCDALWIPAGTVLVGKVSHSLGPGGNPMRRDVSLTVKQSEEGYLDRVTVDVDSDGKKLVK 976
Query: 168 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTPAQ------------------- 205
V +R +GDKF+S QKG G + E P
Sbjct: 977 VRLRTP----RHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINPHAFPSRM 1032
Query: 206 ----LLEAALGKGACDGLMSY-ATPFATSTGGVITEQHQSFVSQLLNCIGA-RNSGITFI 259
LL+ G AC +Y AT F V+ + ++ ++C + +SG T
Sbjct: 1033 TVNYLLQMCFGTAACKLGKTYDATAFERED--VVRDIAEAAKEAGIDCWDSVLHSGSTGR 1090
Query: 260 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 319
+F + CP YQ+ HM K+ R G LT +P
Sbjct: 1091 RLPTKIF-MAPCP--------------------YQRLKHMVSGKMHSRTHGPTDALTRQP 1129
Query: 320 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPY 369
VA R R GGI+ GEM+ C I+HGAS +L E + CK + Y
Sbjct: 1130 VAGRSREGGIKIGEMEQWCKISHGASESLKESVYDMSDKYEVPVCKECGRISDHF---EY 1186
Query: 370 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
CR+C+ A D+ +PY K+L QEL S+GI++ F
Sbjct: 1187 CRMCD-ATDMSLVKLPYTTKILFQELR-SIGISIAF 1220
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 162/396 (40%), Gaps = 88/396 (22%)
Query: 75 EDSLVMNQASLECGVFRSESYKAE---VDNKDIQVKSRP----------SDDMLNFGKIQ 121
ED++++N+A+ E G YK + +D K P +D + + G
Sbjct: 752 EDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKL 811
Query: 122 SKSGDIVIGKYAEIGADHSIKLKHTERGLV--LKVLLSSNDDGKNFAVVSIRQSVNMVHS 179
S + E+ +K+ E +V ++ L S + K +++R +
Sbjct: 812 SYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLR----VPRP 867
Query: 180 ACLGDKFSSMHGQKGV---------LGFLEQ-----------------TPAQLLEAALGK 213
A +GDKF+S GQKG+ L F E T A ++E GK
Sbjct: 868 ATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
Query: 214 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 272
GA G + ATPF S + + ++L G G ++
Sbjct: 928 GAAIHGNVYDATPFRFSEENTAID----YFGKMLEAGGYNYYGTERLYSG---------- 973
Query: 273 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 332
+D + IF + YQ+ HM DK + R+TG+ + T +P+ RKR GG+ FG
Sbjct: 974 VDGREMT----ADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFG 1029
Query: 333 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV-----GG-----PY 369
EM+ D LI+HGA+ L +RL KC ++ +QR+V GG
Sbjct: 1030 EMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDT 1089
Query: 370 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
CR+C + +P+ K L ELS S+ I +F
Sbjct: 1090 CRLCGDNSSVSMIEIPFSFKYLVTELS-SVNINARF 1124
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 143/352 (40%), Gaps = 77/352 (21%)
Query: 75 EDSLVMNQASLECGVFRSESYKAE-VDNKDIQVKSRPSDDMLNFGKIQ---------SKS 124
+D++++N+++ E G YK E +D + + P FG + +
Sbjct: 777 DDAMIINKSADERGFSYGTVYKTEKIDLSLSRGRGDPVTQHFGFGTDEWPKEWLEKLDED 836
Query: 125 GDIVIGKYAEIG-----------ADHSIKLKHT-ERGLVLKVLLSSNDDGK--NFAVVSI 170
G +IG Y E G IK H+ E + +V L ++ K ++I
Sbjct: 837 GLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQYITI 896
Query: 171 RQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-----------------TPA 204
+ + V +GDKFSS HGQKGV + F E T
Sbjct: 897 KYRIRRVPQ--IGDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIG 954
Query: 205 QLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHY 263
+E+ GK GA G+ ATP+ S + F QLL G G
Sbjct: 955 MFVESLAGKAGALHGIAQDATPWTFSEEDTPADY---FGDQLLKA-GYNYHG-------- 1002
Query: 264 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 323
PM A +R+ I+ + +YQ+ HM DK + R+TG LT +PV R
Sbjct: 1003 ------NEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGR 1056
Query: 324 KRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNS 375
KR GGI GEM+ D LI HG S L +RL N ++ Q V CR C S
Sbjct: 1057 KRHGGIRVGEMERDALIGHGTSFLLQDRL--LNSSDYTQSAV----CRECGS 1102
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 24/233 (10%)
Query: 136 GADHSIKLKHTERGLVLKVLLSSNDDG-KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 194
G H + K +E V +V + D+G + VSI+ + + S +GDKFSS HGQKG
Sbjct: 883 GVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTVSIK--LRIPRSPVIGDKFSSRHGQKG 940
Query: 195 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 253
VL ++ PA + + D +++ +A P + G + +S + G
Sbjct: 941 VLS--QKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMFV----ESLAGKAGALHGLAQ 994
Query: 254 SGITFIFKH------YFLFCLFECPMDWIAFICLVRSL--------IFTWITFYQQFIHM 299
F F YF L + ++ L + I+ + +YQ+ HM
Sbjct: 995 DSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHM 1054
Query: 300 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 352
DK + R TG P TG+P+ RK+ GGI GEM+ D L+AHG S L +RL
Sbjct: 1055 VNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDALLAHGTSFLLQDRL 1107
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 180/472 (38%), Gaps = 116/472 (24%)
Query: 26 LYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPLFWI-------------------- 65
+YQ Q + Q +G P + R D L ++ Q+P+
Sbjct: 680 MYQCQ-MAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIA 738
Query: 66 LISDCLGRPEDSLVMNQASLECGVFRSESYKAEVDNKD------IQVKS---RPSDDMLN 116
+IS+ ED++++N+++ E G YK E + D Q K+ RP+ +
Sbjct: 739 VISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDE 798
Query: 117 FGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLK--------------VLLSSN--- 159
K G +G+ + G + ++ ++ V K ++ N
Sbjct: 799 LDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGAT 858
Query: 160 -DDGK-NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------ 199
D K N V +R + N V +GDKFSS HGQKGVL L
Sbjct: 859 RDPSKINNICVKLRFNRNPV----IGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVI 914
Query: 200 --------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 250
T L+E GK GA G AT F + F + L G
Sbjct: 915 INPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTAID----FFGEQLAKAG 970
Query: 251 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 310
G ++ FEC IF + +YQ+ HM +DK + R G
Sbjct: 971 FNRFGNEQMYSGT-TGKEFECE-------------IFFGVCYYQRLRHMVKDKYQVRALG 1016
Query: 311 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANV 360
LT +P+ RK GGI FGEM+ D L+AHGAS L++RL CK +
Sbjct: 1017 KVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGST 1076
Query: 361 IQRVVGGPY-------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 405
+ Y C+ C S+D I ++PY L EL+ ++ IT+K
Sbjct: 1077 LTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELA-AVNITMKL 1127
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 140/350 (40%), Gaps = 73/350 (20%)
Query: 75 EDSLVMNQASLECGVFRSESYKAE-VDNKDIQVKSRPSDDMLNFGKIQ---------SKS 124
+D++++N+++ E G YK E VD + + P FG + +
Sbjct: 784 DDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDED 843
Query: 125 GDIVIGKYAEIG-----------ADHSIKLKHT-ERGLVLKVLLSSNDDGKNFAVVSIRQ 172
G IG Y E G IK H+ E + +V L ++ K + ++
Sbjct: 844 GLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSI 903
Query: 173 SVNMVHSACLGDKFSSMHGQKGV---------LGFLE-----------------QTPAQL 206
+ + +GDKFSS HGQKGV + F E T
Sbjct: 904 KYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMF 963
Query: 207 LEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFL 265
+E+ GK GA G+ +TP+ + + + + L G G
Sbjct: 964 VESLAGKAGALHGIAQDSTPWIFNEDDTPAD----YFGEQLAKAGYNYHG---------- 1009
Query: 266 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 325
PM A +R+ I+ + +YQ+ HM DK + R+TG LT +PV RKR
Sbjct: 1010 ----NEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKR 1065
Query: 326 FGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNS 375
GGI GEM+ D LI HG S L +RL N ++ Q V CR C S
Sbjct: 1066 HGGIRVGEMERDALIGHGTSFLLQDRL--LNSSDYTQASV----CRECGS 1109
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 119/487 (24%), Positives = 182/487 (37%), Gaps = 123/487 (25%)
Query: 3 FLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRPL 62
+LGL IP + +G Y + QA+G ++ R D + L++PQ PL
Sbjct: 721 MILGLISSNIPFPDHNQSPRGIFQYNQAR---QAMGLYISDYRERTD-ISYILYHPQIPL 776
Query: 63 FWILISDCLG---------------------RPEDSLVMNQASLECGVFRSESYKAEVD- 100
S G EDSLV+N ++++ G R+++ K ++
Sbjct: 777 VTSRASKYTGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEI 836
Query: 101 ------------------NKDIQVKSRPSDDMLN--FGKIQS--KSGDIVIG-------- 130
NK ++ D + + K+++ + GD+VIG
Sbjct: 837 IKKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKPTA 896
Query: 131 -KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 189
+ + D S K G V KV+ N+DG + ++ +R + + +GDKFSS
Sbjct: 897 REDEKQYKDASSIYKSLIPGAVDKVITEVNNDG--YPIIKMRIRSERIPN--VGDKFSSR 952
Query: 190 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 222
GQKG +G+ T QL+E LGK A G+
Sbjct: 953 AGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGD 1012
Query: 223 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 282
ATPF + I ++ L G G ++ + P+
Sbjct: 1013 ATPFTSVDLNAINDE--------LVAAGYEEWGNETMYNG---MNGKKLPVK-------- 1053
Query: 283 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG-EMKCDCLIA 341
IF T+YQ+ M DK R G Q LT + R R GG+ G EM+ D L A
Sbjct: 1054 ---IFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCA 1110
Query: 342 HGASGNLHERL----------KCKNVANVIQRVVGGPY--CRICNSADDIIKANVPYGAK 389
HG + L E+ C + +V Y C C + I K +PY K
Sbjct: 1111 HGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFK 1170
Query: 390 LLSQELS 396
LL QEL+
Sbjct: 1171 LLLQELA 1177
>sp|Q38UQ2|RPOB_LACSS DNA-directed RNA polymerase subunit beta OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=rpoB PE=3 SV=1
Length = 1197
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 164/387 (42%), Gaps = 72/387 (18%)
Query: 75 EDSLVMNQASLECGVFRS---ESYKAEVDNKDI----------QVKSRPSDDMLNFGKI- 120
ED++V+++ ++ ++ S E Y++E + + V D+ FG +
Sbjct: 769 EDAIVLSERLVKEDLYTSIHIEEYESEARDTKLGPEEITREIPNVGEDSLKDLDEFGIVR 828
Query: 121 ---QSKSGDIVIGKYAEIGA----------------------DHSIKLKHTERGLVLKVL 155
+ K GDI++GK G D S+K+ H G++ V
Sbjct: 829 VGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGIIQDVK 888
Query: 156 LSSNDDGKNFAV---VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALG 212
+ + + G + + +R + +GDK + HG KG + + P + +
Sbjct: 889 IFTREAGDELSPGVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSIV--VPEEDMPYTPD 946
Query: 213 KGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI---TFIFKHYFLFCLF 269
D L+S P GV + + V +L + ARN GI T +F L+
Sbjct: 947 GTPVDILLS---PM-----GVPSRMNIGQVLELHLGMAARNLGIHVATPVFDGAQDKDLW 998
Query: 270 EC------PMDWIAFICLVRS------LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 317
+ P D + + R+ + + +Y + HM +DK+ R+ G + +T
Sbjct: 999 DAVREANMPSDGKSILYDGRTGEPFDTRVSVGVMYYMKLAHMVDDKLHARSIGPYSLVTQ 1058
Query: 318 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSAD 377
+P+ + +FGG FGEM+ L A+GA+ L E L K+ +V+ RV Y I +
Sbjct: 1059 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKS-DDVVGRV--KTYEAIV-KGE 1114
Query: 378 DIIKANVPYGAKLLSQELSFSMGITLK 404
I K VP ++L +EL S+G+ +K
Sbjct: 1115 PIPKPGVPESFRVLVKELQ-SLGLDMK 1140
>sp|B9LL91|RPOB_CHLSY DNA-directed RNA polymerase subunit beta OS=Chloroflexus aurantiacus
(strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpoB PE=3
SV=1
Length = 1227
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 128 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV----HSACLG 183
+ G+ A D S+++ + RG V+ V + S +G V + Q+V ++ G
Sbjct: 913 IFGEKAREVKDSSLRVPNGVRGKVIDVKVFSRSEGAELPV-GVNQTVRVLLCQKRKISAG 971
Query: 184 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGACD 217
DK + HG KGV+ +E P Q+LE LG A
Sbjct: 972 DKMAGRHGNKGVVSRVLPIEDMPFLPDGRPVDIILNPIGVPSRMNIGQILETHLGWAAAR 1031
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
ATP V H+ + LL G G ++ F+ P
Sbjct: 1032 LGFRVATP-------VFDGAHEDQIKDLLVQAGLPADGKVTLYDGR-TGERFDNP----- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + + H+ EDK+ R+TG + +T +P+ + +FGG FGEM+
Sbjct: 1079 --------VTVGYAYMLKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1130
Query: 338 CLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 397
L A+GA+ L E L K+ +V+ RV Y I + I +A VP K+L +EL
Sbjct: 1131 ALEAYGAAYTLQEMLTVKS-DDVVGRV--KTYEAIV-KGEPIQEAGVPESFKVLIKELQ- 1185
Query: 398 SMGITLK 404
S+G++++
Sbjct: 1186 SLGLSVE 1192
>sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta OS=Chloroflexus aurantiacus
(strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpoB PE=3 SV=1
Length = 1227
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 128 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV----HSACLG 183
+ G+ A D S+++ + RG V+ V + S +G V + Q+V ++ G
Sbjct: 913 IFGEKAREVKDSSLRVPNGVRGKVIDVKVFSRSEGAELPV-GVNQTVRVLLCQKRKISAG 971
Query: 184 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGACD 217
DK + HG KGV+ +E P Q+LE LG A
Sbjct: 972 DKMAGRHGNKGVVSRVLPIEDMPFLPDGRPVDIILNPIGVPSRMNIGQILETHLGWAAAR 1031
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
ATP V H+ + LL G G ++ F+ P
Sbjct: 1032 LGFRVATP-------VFDGAHEDQIKDLLVQAGLPADGKVTLYDGR-TGERFDNP----- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + + H+ EDK+ R+TG + +T +P+ + +FGG FGEM+
Sbjct: 1079 --------VTVGYAYMLKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1130
Query: 338 CLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 397
L A+GA+ L E L K+ +V+ RV Y I + I +A VP K+L +EL
Sbjct: 1131 ALEAYGAAYTLQEMLTVKS-DDVVGRV--KTYEAIV-KGEPIQEAGVPESFKVLIKELQ- 1185
Query: 398 SMGITLK 404
S+G++++
Sbjct: 1186 SLGLSVE 1192
>sp|B8G4U9|RPOB_CHLAD DNA-directed RNA polymerase subunit beta OS=Chloroflexus aggregans
(strain MD-66 / DSM 9485) GN=rpoB PE=3 SV=1
Length = 1227
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 128 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV----HSACLG 183
+ G+ A D S+++ + RG V+ V + S +G V + Q+V ++ G
Sbjct: 913 IFGEKAREVKDSSLRVPNGVRGKVIDVKVFSRSEGAELPV-GVNQTVRVLLCQKRKISAG 971
Query: 184 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGACD 217
DK + HG KGV+ +E P Q+LE LG A
Sbjct: 972 DKMAGRHGNKGVVSRVLPMEDMPFLPDGRPVDIILNPIGVPSRMNIGQILETHLGWAAAR 1031
Query: 218 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
ATP V H+ + LL G G ++ F+ P
Sbjct: 1032 LGFRVATP-------VFDGAHEDQIKDLLVQAGLPADGKVTLYDGR-TGEKFDHP----- 1078
Query: 278 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
+ + + H+ EDK+ R+TG + +T +P+ + +FGG FGEM+
Sbjct: 1079 --------VTVGYAYMLKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1130
Query: 338 CLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 397
L A+GA+ L E L K+ +V+ RV Y I + I +A VP K+L +EL
Sbjct: 1131 ALEAYGAAYTLQEMLTVKS-DDVVGRV--KTYEAIV-KGEPIQEAGVPESFKVLIKELQ- 1185
Query: 398 SMGITLK 404
S+G++++
Sbjct: 1186 SLGLSVE 1192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,914,455
Number of Sequences: 539616
Number of extensions: 6317688
Number of successful extensions: 14472
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12152
Number of HSP's gapped (non-prelim): 2028
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)