RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014847
         (417 letters)



>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score =  195 bits (497), Expect = 2e-55
 Identities = 141/504 (27%), Positives = 205/504 (40%), Gaps = 127/504 (25%)

Query: 2    SFLLGLSCGIIPSHLQTMTMQGWVLYQSQKHSPQAIGFPTTNPNIRVDTLLQQLFYPQRP 61
            S +LG++  IIP        Q            QA+G   TN N+R+DT+   L+YPQ+P
Sbjct: 729  SMILGVAASIIPF---PDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKP 785

Query: 62   LFWILISDCLGRP--------------------EDSLVMNQASLECGVFRS---ESYKAE 98
            L      + L                       EDS++MNQ+S++ G+FRS    SY  +
Sbjct: 786  LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 845

Query: 99   VDNKDIQVKSRPS-------------------DDMLNFGKIQSKSGDIVIGKYAEIGADH 139
                 + +                        DD L    ++    D++IGK   I  D 
Sbjct: 846  EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 905

Query: 140  ---------------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGD 184
                           S  L+ TE G+V +VL+++N DG  F  V +R          +GD
Sbjct: 906  EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRT----TKIPQIGD 961

Query: 185  KFSSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACD 217
            KF+S HGQKG +G         F  +                 T A L+E  L K  A  
Sbjct: 962  KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1021

Query: 218  GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 277
            G    A+PF      +  E     +S+LL   G ++ G   ++                 
Sbjct: 1022 GNEGDASPF----TDITVEG----ISKLLREHGYQSRGFEVMY----------NGHTGKK 1063

Query: 278  FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 337
                  + IF   T+YQ+  HM +DK+  R  G  Q LT +PV  R R GG+ FGEM+ D
Sbjct: 1064 L----MAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1119

Query: 338  CLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANV 384
            C+IAHGA+  L ERL              C  +  + +       C+ C++  DI + ++
Sbjct: 1120 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1179

Query: 385  PYGAKLLSQELSFSMGITLKFDTQ 408
            PY AKLL QEL  +M IT +  T 
Sbjct: 1180 PYAAKLLFQELM-AMNITPRLYTD 1202


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
            [TaxId: 274]}
          Length = 1119

 Score =  149 bits (377), Expect = 1e-39
 Identities = 80/429 (18%), Positives = 149/429 (34%), Gaps = 104/429 (24%)

Query: 75   EDSLVMNQASLECGVFRS---ESYKAEV-DNKDIQVKSRPSDDMLNFGKIQS-------- 122
            ED++V+++  L+   + S   E Y+ E  D K    +       L+   ++         
Sbjct: 685  EDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVR 744

Query: 123  -----KSGDIVIGKYAEIGAD----------------------HSIKLKHTERGLVLKVL 155
                 K GDI++G+ +  G                         S+++   E G+V++ +
Sbjct: 745  IGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTV 804

Query: 156  --------LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE------- 200
                    +      +    V + Q   +     +GDK ++ HG KGV+  +        
Sbjct: 805  RLRRGDPGVELKPGVREVVRVYVAQKRKL----QVGDKLANRHGNKGVVAKILPVEDMPH 860

Query: 201  -------------------QTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQS 240
                                   Q+LE  LG  G   G    +  F  +    I E    
Sbjct: 861  LPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQ 920

Query: 241  FVSQLLNCIGARNSGITFIFKHYFLFCL-------FECPMDWIAFICL------------ 281
                          G+                    + P + +  + L            
Sbjct: 921  AFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTG 980

Query: 282  --VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 339
              +   I     F  +  HM EDK+  R+TG +  +T +P+  + +FGG  FGEM+   L
Sbjct: 981  EPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL 1040

Query: 340  IAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSM 399
             A+GA+  L E L  K+  ++  R     Y  I    +D+ + +VP   ++L +EL  ++
Sbjct: 1041 EAYGAAHTLQEMLTLKS-DDIEGRN--AAYEAIIKG-EDVPEPSVPESFRVLVKEL-QAL 1095

Query: 400  GITLKFDTQ 408
             + ++   +
Sbjct: 1096 ALDVQTLDE 1104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,498,364
Number of extensions: 68403
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 6
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)