BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014848
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6LU93|TRPD_CLOB8 Anthranilate phosphoribosyltransferase OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=trpD PE=3 SV=1
Length = 339
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 218 ALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAY 277
ALRE L +EV+GV+ ++ + + S + FL+G R+N ET R++
Sbjct: 11 ALRE-----ELTEDEVRGVINQIMKGEA-------TSSQIGGFLVGLRVNGETPRQILGA 58
Query: 278 CLAFDDELGPPPVADVKSLTHY-GEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMP 336
A D + + + L G DG+ F ST VA V + G HG +
Sbjct: 59 VKAIRDNGVKVEIENTEHLIDTCGTGGDGSKTFNIST-AVAIVAASGGAKVAKHGNRAVS 117
Query: 337 PKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
K G + +L +G + + +Q+K+++E+ + F +
Sbjct: 118 SKSGCAD--VLVELGINIDFDEIQSKKIIEENGMAFLF 153
>sp|B1YLS1|TRPD_EXIS2 Anthranilate phosphoribosyltransferase OS=Exiguobacterium sibiricum
(strain DSM 17290 / JCM 13490 / 255-15) GN=trpD PE=3
SV=1
Length = 339
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286
HL +EE+Q R++ A V++S ++AFLI + ET EL +
Sbjct: 13 HLRFEEMQQAARELF-------AEDVTDSEIAAFLIALKAKGETAEELAGLASIMREVAV 65
Query: 287 PPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQM 346
PV+ + + G DG+ F ST A V + G HG + K G + +
Sbjct: 66 DIPVSGTDFIDNCGTGGDGSQSFNISTT-AAFVLAGAGAKVAKHGNRSVSSKTGSAD--V 122
Query: 347 LKFMGASTNLSVLQAKELLEDEEIGFAYVSLREAR-------------PSLYSLIG 389
L+ +G ++S + LLE I F + R P++++LIG
Sbjct: 123 LESLGVPLDVSTEEIATLLETNGIAFLFAQRMHPRVKQIMKVRRDLRIPTIFNLIG 178
>sp|Q4ZML2|TRPD_PSEU2 Anthranilate phosphoribosyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=trpD PE=3 SV=1
Length = 353
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL V+ L EE+ V+R+++ Q +E+ + AFL+G RM ET
Sbjct: 5 MDIKNALNRVVNQLDLTTEEMSDVMREIMTGQC-------TEAQIGAFLMGMRMKSETID 57
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFFRST--LFVAAVRSCYGESCLL 329
E+ + G + + + G DG F ST FV A C +
Sbjct: 58 EIVGAVSVMRELAGKVELKTLDGVVDIVGTGGDGANIFNVSTASAFVIAAAGC---TVAK 114
Query: 330 HGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ +Q ++ IGF +
Sbjct: 115 HGNRAVSGKSGSAD--LLEAAGVYLNLTPVQVARCIDSVGIGFMF 157
>sp|A5CXR3|TRPD_VESOH Anthranilate phosphoribosyltransferase OS=Vesicomyosocius okutanii
subsp. Calyptogena okutanii (strain HA) GN=trpD PE=3
SV=1
Length = 339
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + A+++++ L E+Q V+ D++ + +++ S FL+G + E+
Sbjct: 1 MNIQQAIKQIVKKQDLSQNEMQKVMNDIMTGKT-------TDTQTSGFLVGLAIKGESID 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHG 331
E+ A + + K L G DG F ST A V + G S HG
Sbjct: 54 EITAVVKIIRSFTKSVTIKNTKHLVDTCGTGGDGLGLFNISTA-CAFVVAAAGGSVAKHG 112
Query: 332 AEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
+ K G + +LK G + N+SV + + +E IGF +
Sbjct: 113 NRGISSKSGSAD--VLKAAGVNLNMSVERISKCIEKIGIGFMF 153
>sp|O66585|Y209_AQUAE Uncharacterized protein aq_209 OS=Aquifex aeolicus (strain VF5)
GN=aq_209 PE=3 SV=1
Length = 309
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 33/193 (17%)
Query: 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP 287
L EE V R +L ++ S+ +AFL R+ ET EL A + +
Sbjct: 21 LSQEEAYEVFRAILEGKL-------SDIKTTAFLTAMRIKGETSEELLGVIKAIKERMNF 73
Query: 288 PPVADVKSLTHYGEPYDGNTRFFRSTLFV--AAVRSC--YGESCLLHGAEWMPPKGGVTE 343
P + G YDG R T+++ +A+ C G H A P K GVT
Sbjct: 74 PQKKE--DALDLGLNYDGKNR----TIYILPSALWLCSRLGVEFTNHYALGAPTKEGVTL 127
Query: 344 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATS 403
+++K +G N+S +V + P LY L+ LR + R + T
Sbjct: 128 YEVVKELGVDMNVS----------------FVDQKNYAPELYKLMPLRRELGFRSLINTV 171
Query: 404 EKVQQFVRVSHIV 416
EK + IV
Sbjct: 172 EKFLNPFQTKKIV 184
>sp|A4XZC6|TRPD_PSEMY Anthranilate phosphoribosyltransferase OS=Pseudomonas mendocina
(strain ymp) GN=trpD PE=3 SV=1
Length = 348
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++A L EE+Q V+R+++ Q +++ + AFL+G RM ET
Sbjct: 1 MNIKEALNRIVAQLDLTTEEMQAVMREIMTGQC-------TDAQIGAFLMGMRMKSETID 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHG 331
E+ EL P V D + L G DG F ST V + G+ HG
Sbjct: 54 EIVGAASVM-RELAAPVVIDAERLVDTCGTGGDGMNIFNVSTAAAFVVAAAGGKVA-KHG 111
Query: 332 AEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
+ K G + +L+ G L Q +E +GF +
Sbjct: 112 NRAVSGKSGSAD--LLEAAGVYLGLKPEQVARCVESVGVGFMF 152
>sp|B9MKD0|TRPD_CALBD Anthranilate phosphoribosyltransferase OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=trpD PE=3 SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 12/183 (6%)
Query: 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDREL 274
L+ L V L Y++V+ +L ++L ++D E AFL + ET++E+
Sbjct: 2 LIDVLELVTNKKDLEYDQVKNLLDNILEGELD-------EIKFGAFLAALKTKGETEKEI 54
Query: 275 KAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 334
A+ AF D+ ++ G DG F ST A V SC+ HG
Sbjct: 55 SAFVDAFYDKAKKLNFDHPATIDTCGTGGDGKGTFNISTA-AAIVLSCFDVKVAKHGNRS 113
Query: 335 MPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHI 394
+ G + +L+ +G ++ + K L E++ FA++ P++ + LR +
Sbjct: 114 ITSNSGSAD--ILEKLG--IDIQAEEDKILKGLEKLNFAFLFAPLYHPAMKKVANLRRSL 169
Query: 395 KKR 397
R
Sbjct: 170 GIR 172
>sp|B2FKL2|TRPD_STRMK Anthranilate phosphoribosyltransferase OS=Stenotrophomonas
maltophilia (strain K279a) GN=trpD PE=3 SV=1
Length = 343
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 218 ALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAY 277
AL + G + ++E+ ++R ++ VS + +A L G R+ +ET E+ A
Sbjct: 8 ALHRTIEHGEIFFDEMVDLMRQIM-------RGDVSPMMTAAILTGLRVKKETVDEIAAA 60
Query: 278 CLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFFRST--LFVAAVRSCYGESCLLHGAEW 334
+ P PVAD +L G DG+ F ST +FVAA HG
Sbjct: 61 ATVMREFARPVPVADTSNLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVAK---HGNRS 117
Query: 335 MPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHI 394
+ K G + L+ +GA L Q ++ IGF + + PS+ + +R +
Sbjct: 118 VSSKSGSADA--LEALGAVIELQPDQVAAAIDRTGIGFMFAPIHH--PSMKVVAPVRREM 173
Query: 395 KKR 397
R
Sbjct: 174 GVR 176
>sp|C1DHY8|TRPD_AZOVD Anthranilate phosphoribosyltransferase OS=Azotobacter vinelandii
(strain DJ / ATCC BAA-1303) GN=trpD PE=3 SV=1
Length = 348
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Query: 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP 287
L E+QGV+R ++ Q S++ + AFL+G RM E+ E+ L + P
Sbjct: 16 LNTAEMQGVMRQIMTGQC-------SDAQIGAFLMGMRMKSESIDEIVGAALVMRELAAP 68
Query: 288 PPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML 347
+ + + G DG F ST V + G HG + K G + +L
Sbjct: 69 VTIGVERLVDTCGTGGDGMNIFNVSTAAAFVVAAAGGRVA-KHGNRAVSGKSGSAD--LL 125
Query: 348 KFMGASTNLSVLQAKELLEDEEIGFAY 374
+ G LS Q +E +GF +
Sbjct: 126 EAAGVYLELSPEQVARCVESVGVGFMF 152
>sp|A2SLH5|TRPD_METPP Anthranilate phosphoribosyltransferase OS=Methylibium
petroleiphilum (strain PM1) GN=trpD PE=3 SV=1
Length = 344
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 252 VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHY-GEPYDGNTRFF 310
+S +++A +G R+ +E+ E+ A + P PVAD + L G D F
Sbjct: 34 MSPVMIAALAVGLRVKKESIGEIAAAATVMREFATPVPVADTEHLVDLCGTGGDAAHTFN 93
Query: 311 RST--LFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDE 368
ST +FVAA HG + G + +L+ +GAS +L+ Q E L +
Sbjct: 94 ISTTAMFVAAAAGARVAK---HGGRSVSSTSGSAD--VLEALGASIDLAPAQVAECLAES 148
Query: 369 EIGFAY 374
IGF +
Sbjct: 149 GIGFMF 154
>sp|Q88A04|TRPD_PSESM Anthranilate phosphoribosyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=trpD PE=3 SV=1
Length = 349
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL V+ L +E++ V+R+++ Q +E+ + AFL+G RM ET
Sbjct: 1 MNIKSALNRVVNQLDLSTDEMRDVMREIMTGQC-------TEAQIGAFLMGMRMKSETID 53
Query: 273 ELKAYC-----LAFDDELGP-PPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGES 326
E+ LA EL V D+ G DG F ST A V S G +
Sbjct: 54 EIVGAVSVMRELADKVELKTLDGVVDI-----VGTGGDGANIFNVSTA-SAFVISAAGCT 107
Query: 327 CLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ +Q ++ IGF +
Sbjct: 108 VAKHGNRAVSGKSGSAD--LLEAAGVYLNLTPVQVARCIDSVGIGFMF 153
>sp|Q48NP8|TRPD_PSE14 Anthranilate phosphoribosyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=trpD PE=3 SV=1
Length = 349
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 25/170 (14%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL V+ L +E++ V+R+++ Q +E+ + AFL+G RM ET
Sbjct: 1 MNIKSALNRVVNQLDLTTDEMRDVMREIMTGQC-------TEAQIGAFLMGMRMKSETID 53
Query: 273 ELKAYC-----LAFDDELGP-PPVADVKSLTHYGEPYDGNTRFFRST--LFVAAVRSCYG 324
E+ LA EL V D+ G DG F ST FV A C
Sbjct: 54 EIVGAVSVMRELASSVELKTLDGVVDI-----VGTGGDGANIFNVSTASAFVIAAAGC-- 106
Query: 325 ESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ +Q ++ IGF +
Sbjct: 107 -KVAKHGNRAVSGKSGSAD--LLEAAGVYLNLTPVQVARCIDSVGIGFMF 153
>sp|Q1IG00|TRPD_PSEE4 Anthranilate phosphoribosyltransferase OS=Pseudomonas entomophila
(strain L48) GN=trpD PE=3 SV=1
Length = 349
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++ L EE++ V+R ++ Q SE+ + AFL+G RM E+
Sbjct: 1 MDIKSALSRIVGHLDLSTEEMRDVMRQIMTGQC-------SEAQIGAFLMGMRMKSESID 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH----YGEPYDGNTRFFRST--LFVAAVRSCYGES 326
E+ ++ EL ++KSL G DG F ST FV A C +
Sbjct: 54 EIVG-AVSVMRELADK--VELKSLDGVVDIVGTGGDGANIFNVSTASAFVIAAAGC---T 107
Query: 327 CLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ +Q ++ IGF +
Sbjct: 108 VAKHGNRAVSGKSGSAD--LLEAAGIYLNLTPVQVARCIDSLGIGFMF 153
>sp|B1JE35|TRPD_PSEPW Anthranilate phosphoribosyltransferase OS=Pseudomonas putida
(strain W619) GN=trpD PE=3 SV=1
Length = 349
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++ L EE++ V+R ++ Q SE+ + AFL+G RM E+
Sbjct: 1 MDIKSALSRIVGHLDLSTEEMRDVMRQIMTGQC-------SEAQIGAFLMGMRMKSESID 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH----YGEPYDGNTRFFRSTL--FVAAVRSCYGES 326
E+ ++ EL ++KSL G DG F ST FV A C +
Sbjct: 54 EIVG-AVSVMRELADK--VELKSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGC---T 107
Query: 327 CLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ Q ++ IGF +
Sbjct: 108 VAKHGNRAVSGKSGSAD--LLEAAGIYLNLTPTQVGRCIDSLGIGFMF 153
>sp|B0KJB2|TRPD_PSEPG Anthranilate phosphoribosyltransferase OS=Pseudomonas putida
(strain GB-1) GN=trpD PE=3 SV=1
Length = 349
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++ L EE++ V+R ++ Q SE+ + AFL+G RM E+
Sbjct: 1 MDIKSALARIVGHLDLSTEEMRDVMRQIMTGQC-------SEAQIGAFLMGMRMKSESID 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH----YGEPYDGNTRFFRST--LFVAAVRSCYGES 326
E+ ++ EL ++KSL G DG F ST FV A C +
Sbjct: 54 EIVG-AVSVMRELADK--VELKSLDGVVDIVGTGGDGANIFNVSTASAFVLAAAGC---T 107
Query: 327 CLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ Q ++ IGF +
Sbjct: 108 VAKHGNRAVSGKSGSAD--LLEAAGIYLNLTPTQVARCIDSLGIGFMF 153
>sp|B4SLE9|TRPD_STRM5 Anthranilate phosphoribosyltransferase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=trpD PE=3 SV=1
Length = 343
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 252 VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFF 310
VS + +A L G R+ +ET E+ A + PVAD L G DG+ F
Sbjct: 35 VSPMMTAAILTGLRVKKETIDEIAAAATVMREFALAVPVADSTHLVDIVGTGGDGSHTFN 94
Query: 311 RST--LFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDE 368
ST +FVAA HG + K G + ++ +GA+ L Q +E
Sbjct: 95 ISTCAMFVAAAAGARVAK---HGNRSVSSKSGSADA--VEALGAAIELQPAQVAAAIEQT 149
Query: 369 EIGFAYVSLREARPSLYSLIGLREHIKKR 397
IGF + + PS+ + +R + R
Sbjct: 150 GIGFMFAPIHH--PSMKVVAPVRREMGVR 176
>sp|Q0K6I1|TRPD_CUPNH Anthranilate phosphoribosyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=trpD PE=3 SV=2
Length = 341
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 230 YEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP 289
++E+ ++R ++ Q+ S + +A L G R+ +ET E+ A + P
Sbjct: 19 HDEMLHLMRQIMQGQI-------SPVMAAAILTGLRVKKETIGEISAAAQVMREFANKVP 71
Query: 290 VADVKSLTH-YGEPYDGNTRFFRST--LFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQM 346
VAD ++ G DG+ F ST +FVAA HG + K G + +
Sbjct: 72 VADRENFVDIVGTGGDGSHTFNISTASMFVAAAAG---AKIAKHGNRGVSSKSGSAD--V 126
Query: 347 LKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKR 397
L+ +G + L+ Q + +E+ IGF + P++ ++ +R+ + R
Sbjct: 127 LEALGVNIMLTPEQVGQCIEETGIGFMFAPTH--HPAMKNVAPIRKEMGVR 175
>sp|P20575|TRPD_PSEPU Anthranilate phosphoribosyltransferase OS=Pseudomonas putida
GN=trpD PE=3 SV=1
Length = 349
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++ L EE++ V+R ++ Q +E+ + AFL+G RM E+
Sbjct: 1 MDIKSALSRIVGQLDLTTEEMRDVMRQIMTGQC-------TEAQIGAFLMGMRMKSESID 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTH----YGEPYDGNTRFFRSTL--FVAAVRSCYGES 326
E+ ++ EL ++KSL G DG F ST FV A C +
Sbjct: 54 EIVG-AVSVMRELADK--VELKSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGC---T 107
Query: 327 CLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ Q ++ IGF +
Sbjct: 108 VAKHGNRAVSGKSGSAD--LLEAAGIYLNLTPTQVARCIDSLGIGFMF 153
>sp|A4VHK0|TRPD_PSEU5 Anthranilate phosphoribosyltransferase OS=Pseudomonas stutzeri
(strain A1501) GN=trpD PE=3 SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 218 ALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAY 277
AL ++ L EE+Q V+R ++ Q +++ + AFL+G RM ET E+
Sbjct: 6 ALNRIVGQLDLTTEEMQAVMRQIMTGQC-------TDAQVGAFLMGMRMKSETIDEIVGA 58
Query: 278 CLAFDDELGPPPVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMP 336
EL P D L G DG F ST + V + G HG +
Sbjct: 59 VQVM-RELAAPVRFDTDKLVDTCGTGGDGMNIFNVSTA-ASFVVAAAGGKVAKHGNRAVS 116
Query: 337 PKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
K G + +L+ G +L+ Q ++ +GF +
Sbjct: 117 GKSGSAD--LLEAAGVFLDLTPEQVARSVDTVGVGFMF 152
>sp|Q21W90|TYPH_RHOFD Putative thymidine phosphorylase OS=Rhodoferax ferrireducens
(strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_2241
PE=3 SV=1
Length = 522
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRE 273
+GALR LAG LG E+ G++RD+ L S+ LSAF++ + E DRE
Sbjct: 105 IGALRRKLAGERLGREDFLGIVRDIAELH-------YSKIELSAFVVATNRD-ELDRE 154
>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella multocida (strain
Pm70) GN=recG PE=3 SV=1
Length = 693
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 2 NTLLNPEPSFSLIPSIRITKTH-YLTHRRLQASRQFSSTDG--NRLIG------RRIRLT 52
+ L E FS + + + + H + H+RL + D ++LI R + +T
Sbjct: 379 HALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQADHYPHQLIMTATPIPRTLAMT 438
Query: 53 VKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAK---VCT 102
V ADLD+++ID+L + I AIS R+ + + N + + + VCT
Sbjct: 439 VYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHACVNEKRQAYWVCT 491
>sp|Q9YER2|G1PDH_AERPE Glycerol-1-phosphate dehydrogenase [NAD(P)+] OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=egsA PE=1 SV=2
Length = 352
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 302 PYDGNTRFFRSTL-FVAAVRSCYGES--------CLLHGAEWMPPKGGVTEEQMLKFMGA 352
P G+ F L VA + +GE+ LHG W +G +LK +GA
Sbjct: 247 PASGSEHLFAHALHIVARNKPLHGEAVGVGTIMMAYLHGKNWRRIRG------LLKTVGA 300
Query: 353 STNLSVLQAKEL-LEDEEIGFAYVSLREARPSLYSLIG 389
TN AKEL +ED+E+ A RP Y+++G
Sbjct: 301 PTN-----AKELGVEDDEVVEALTIAARIRPERYTILG 333
>sp|A5VXL4|TRPD_PSEP1 Anthranilate phosphoribosyltransferase OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=trpD PE=3 SV=1
Length = 349
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 25/170 (14%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++ L EE++ V+R ++ Q SE+ + AFL+G RM E+
Sbjct: 1 MDIKNALSRIVGQLDLTTEEMREVMRQIMTGQC-------SEAQIGAFLMGMRMKSESID 53
Query: 273 ELKAYC-----LAFDDELGP-PPVADVKSLTHYGEPYDGNTRFFRSTL--FVAAVRSCYG 324
E+ LA EL V D+ G DG F ST FV A C
Sbjct: 54 EIVGAVSVMRELAEKVELQSLDGVVDI-----VGTGGDGANIFNVSTASSFVLAAAGC-- 106
Query: 325 ESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ Q ++ IGF +
Sbjct: 107 -PVAKHGNRAVSGKSGSAD--LLEAAGIYLNLTPTQVARCIDSLGIGFMF 153
>sp|Q88QR7|TRPD_PSEPK Anthranilate phosphoribosyltransferase OS=Pseudomonas putida
(strain KT2440) GN=trpD PE=3 SV=1
Length = 349
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 25/170 (14%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + AL ++ L EE++ V+R ++ Q SE+ + AFL+G RM E+
Sbjct: 1 MDIKSALSRIVGQLDLTTEEMREVMRQIMTGQC-------SEAQIGAFLMGMRMKSESID 53
Query: 273 ELKAYC-----LAFDDELGP-PPVADVKSLTHYGEPYDGNTRFFRSTL--FVAAVRSCYG 324
E+ LA EL V D+ G DG F ST FV A C
Sbjct: 54 EIVGAVSVMRELAEKVELQSLDGVVDI-----VGTGGDGANIFNVSTASSFVLAAAGC-- 106
Query: 325 ESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374
HG + K G + +L+ G NL+ Q ++ IGF +
Sbjct: 107 -PVAKHGNRAVSGKSGSAD--LLEAAGIYLNLTPTQVARCIDSLGIGFMF 153
>sp|Q9K9K5|SPEA_BACHD Arginine decarboxylase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=speA PE=3
SV=1
Length = 491
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 12 SLIPSIRITKTHYLTHRRLQASRQFSSTDGNRLIGRRIRLTVKADLDSALIDQLGLKESD 71
++I + T T YL L A+R+ +T+G LIG I+L +A ID L +
Sbjct: 252 TIISMLTTTSTSYLLLASLDAARKHLATNGRDLIGYTIQLADQARDQINAIDGLYCVGKE 311
Query: 72 IINPAISSSYRSSKL 86
I+ + Y +KL
Sbjct: 312 ILGTIATYDYDPTKL 326
>sp|P20574|TRPD_PSEAE Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=trpD PE=3 SV=1
Length = 349
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + GAL ++ L EE+Q V+R ++ Q +++ + AFL+G RM ET
Sbjct: 1 MDIKGALNRIVNQLDLTTEEMQAVMRQIMTGQC-------TDAQIGAFLMGMRMKSETID 53
Query: 273 EL---KAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLL 329
E+ A D + P + V + G DG F + + V + G
Sbjct: 54 EIVGAVAVMRELADGVQLPTLKHVVDVV--GTGGDG-ANIFNVSSAASFVVAAAGGKVAK 110
Query: 330 HGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLR 378
HG + K G + +L+ G L+ Q ++ +GF + +
Sbjct: 111 HGNRAVSGKSGSAD--LLEAAGIYLELTSEQVARCIDTVGVGFMFAQVH 157
>sp|Q02TB6|TRPD_PSEAB Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=trpD PE=3 SV=1
Length = 349
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + GAL ++ L EE+Q V+R ++ Q +++ + AFL+G RM ET
Sbjct: 1 MDIKGALNRIVNQLDLTTEEMQAVMRQIMTGQC-------TDAQIGAFLMGMRMKSETID 53
Query: 273 EL---KAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLL 329
E+ A D + P + V + G DG F + + V + G
Sbjct: 54 EIVGAVAVMRELADGVQLPTLKHVVDVV--GTGGDG-ANIFNVSSAASFVVAAAGGKVAK 110
Query: 330 HGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLR 378
HG + K G + +L+ G L+ Q ++ +GF + +
Sbjct: 111 HGNRAVSGKSGSAD--LLEAAGIYLELTSEQVARCIDTVGVGFMFAQVH 157
>sp|B7V608|TRPD_PSEA8 Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa
(strain LESB58) GN=trpD PE=3 SV=1
Length = 349
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M + GAL ++ L EE+Q V+R ++ Q +++ + AFL+G RM ET
Sbjct: 1 MDIKGALNRIVNQLDLTTEEMQAVMRQIMTGQC-------TDAQIGAFLMGMRMKSETID 53
Query: 273 EL---KAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLL 329
E+ A D + P + V + G DG F + + V + G
Sbjct: 54 EIVGAVAVMRELADGVQLPTLKHVVDVV--GTGGDG-ANIFNVSSAASFVVAAAGGKVAK 110
Query: 330 HGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLR 378
HG + K G + +L+ G L+ Q ++ +GF + +
Sbjct: 111 HGNRAVSGKSGSAD--LLEAAGIYLELTSEQVARCIDTVGVGFMFAQVH 157
>sp|A1WYT2|TRPD_HALHL Anthranilate phosphoribosyltransferase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=trpD PE=3 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 18/189 (9%)
Query: 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR 272
M L ALR + L +E+ V R ++ G + + + FLIG R+ ET +
Sbjct: 1 MDLTAALRRITENQDLSPDEMTAVFRTIMT-------GGATPAQIGGFLIGMRLKGETVQ 53
Query: 273 ELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFV----AAVRSCYGESCL 328
E+ A EL DV H G R TL V A V + G
Sbjct: 54 EMAAAASVM-RELAER--VDVGDDFHRLVDTCGTGGDARGTLNVSTAAAFVTAAGGIPVA 110
Query: 329 LHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLI 388
HG + + G + +L+ GA+ LS E + +GF + L + ++ +
Sbjct: 111 KHGNRSVSGRSGSAD--LLEACGATLELSSEAVAECIRRVNVGFLFAPLHHS--AMKHAV 166
Query: 389 GLREHIKKR 397
G R+ + R
Sbjct: 167 GPRKELGVR 175
>sp|Q3IQ38|TRPD_NATPD Anthranilate phosphoribosyltransferase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=trpD PE=3 SV=1
Length = 333
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 134 EEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWP 174
EE ++AQ+GA SA+ + PE ++EG R A P
Sbjct: 28 EEATEAQIGALLSALRAKGETEPEIAGFAEGMRAAARRIDP 68
>sp|Q67NQ5|MTAD_SYMTH 5-methylthioadenosine/S-adenosylhomocysteine deaminase
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=mtaD PE=3 SV=1
Length = 436
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 340 GVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPP 399
G + E ML +G+ + +QAKEL D + AY ++ A ++G+ I P
Sbjct: 304 GASSENMLHILGSEMRIGAIQAKELEGDPAVYTAYDAVAMATIEAARVLGMESEIGSLEP 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,790,374
Number of Sequences: 539616
Number of extensions: 6910888
Number of successful extensions: 15613
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 15590
Number of HSP's gapped (non-prelim): 70
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)