Query 014848
Match_columns 417
No_of_seqs 164 out of 1075
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09522 bifunctional glutamin 100.0 5.2E-67 1.1E-71 550.5 22.9 302 99-417 51-390 (531)
2 PRK14607 bifunctional glutamin 100.0 9.9E-65 2.2E-69 533.2 25.2 302 99-417 47-385 (534)
3 COG0547 TrpD Anthranilate phos 100.0 5.2E-57 1.1E-61 451.6 22.3 193 213-417 2-194 (338)
4 PRK07394 hypothetical protein; 100.0 4.2E-56 9.2E-61 446.1 22.0 196 213-417 3-205 (342)
5 PRK08136 glycosyl transferase 100.0 2.9E-54 6.2E-59 429.3 21.8 192 213-417 1-200 (317)
6 PLN02641 anthranilate phosphor 100.0 6.3E-54 1.4E-58 430.7 21.9 190 214-417 3-192 (343)
7 PRK00188 trpD anthranilate pho 100.0 1.8E-52 3.9E-57 418.7 22.4 192 213-417 1-192 (339)
8 PRK09071 hypothetical protein; 100.0 9.2E-52 2E-56 412.2 21.2 190 213-417 2-196 (323)
9 TIGR01245 trpD anthranilate ph 100.0 5.2E-51 1.1E-55 407.0 20.4 187 219-417 1-188 (330)
10 PRK06078 pyrimidine-nucleoside 100.0 1.2E-42 2.6E-47 357.6 19.1 186 213-417 1-198 (434)
11 TIGR02644 Y_phosphoryl pyrimid 100.0 5.7E-41 1.2E-45 342.9 17.6 177 216-411 2-182 (405)
12 PRK04350 thymidine phosphoryla 100.0 2E-39 4.2E-44 337.4 21.8 186 216-416 82-283 (490)
13 PRK05820 deoA thymidine phosph 100.0 1.2E-37 2.7E-42 321.1 20.2 170 213-397 2-177 (440)
14 TIGR02643 T_phosphoryl thymidi 100.0 6E-36 1.3E-40 307.9 17.0 166 215-395 3-174 (437)
15 TIGR02645 ARCH_P_rylase putati 100.0 5.3E-35 1.1E-39 304.3 21.2 174 216-404 87-262 (493)
16 PF00591 Glycos_transf_3: Glyc 100.0 9.8E-36 2.1E-40 285.7 7.2 118 295-417 3-120 (252)
17 TIGR03327 AMP_phos AMP phospho 100.0 5.1E-34 1.1E-38 297.1 20.4 173 213-400 85-259 (500)
18 KOG1438 Anthranilate phosphori 100.0 3.1E-31 6.7E-36 258.1 6.1 118 295-417 104-222 (373)
19 COG0213 DeoA Thymidine phospho 99.9 1.5E-23 3.2E-28 213.8 13.7 171 213-399 2-178 (435)
20 COG0512 PabA Anthranilate/para 99.8 1.2E-19 2.5E-24 169.7 6.9 114 97-220 46-185 (191)
21 PF02885 Glycos_trans_3N: Glyc 99.7 4.7E-17 1E-21 127.8 8.0 65 214-285 1-65 (66)
22 KOG0026 Anthranilate synthase, 99.4 5.9E-14 1.3E-18 129.5 4.6 105 99-212 66-200 (223)
23 PLN02889 oxo-acid-lyase/anthra 99.3 1.2E-12 2.7E-17 145.9 4.5 107 98-212 133-321 (918)
24 PRK08007 para-aminobenzoate sy 99.3 3.5E-12 7.5E-17 118.2 4.1 113 99-221 46-183 (187)
25 PRK07649 para-aminobenzoate/an 99.0 1.1E-10 2.5E-15 109.1 3.9 107 99-210 46-172 (195)
26 KOG1224 Para-aminobenzoate (PA 98.9 4.4E-10 9.5E-15 118.4 1.9 104 99-210 67-201 (767)
27 TIGR00566 trpG_papA glutamine 98.9 1E-09 2.2E-14 101.8 3.8 117 100-221 47-184 (188)
28 CHL00101 trpG anthranilate syn 98.8 4.6E-09 9.9E-14 97.5 5.2 119 98-221 45-184 (190)
29 PLN02335 anthranilate synthase 98.8 4E-09 8.7E-14 100.7 4.9 109 98-210 64-197 (222)
30 PRK06774 para-aminobenzoate sy 98.7 7.3E-09 1.6E-13 95.8 4.1 119 99-222 46-188 (191)
31 PRK05670 anthranilate synthase 98.7 1.3E-08 2.9E-13 93.9 4.9 119 99-222 46-184 (189)
32 PRK08857 para-aminobenzoate sy 98.7 1.2E-08 2.6E-13 94.8 4.2 120 98-222 45-189 (193)
33 PLN02771 carbamoyl-phosphate s 98.7 7.2E-09 1.6E-13 107.6 2.8 108 99-211 284-406 (415)
34 PRK06895 putative anthranilate 98.7 1.3E-08 2.7E-13 94.3 3.9 120 98-222 45-185 (190)
35 TIGR01815 TrpE-clade3 anthrani 98.5 5.6E-08 1.2E-12 107.1 2.9 108 98-210 561-689 (717)
36 PRK05637 anthranilate synthase 98.5 8.9E-08 1.9E-12 90.8 3.5 118 99-222 47-205 (208)
37 TIGR01823 PabB-fungal aminodeo 98.4 1.6E-07 3.5E-12 104.0 3.8 107 99-212 56-189 (742)
38 PRK07765 para-aminobenzoate sy 98.4 2.7E-07 5.9E-12 87.7 4.9 112 94-210 44-176 (214)
39 PRK12838 carbamoyl phosphate s 98.4 2.7E-07 5.8E-12 94.3 5.0 108 99-211 211-334 (354)
40 TIGR01368 CPSaseIIsmall carbam 98.4 4.1E-07 8.9E-12 93.1 5.9 110 98-212 216-341 (358)
41 cd01744 GATase1_CPSase Small c 98.3 4E-07 8.7E-12 83.5 4.1 109 98-211 41-165 (178)
42 PRK12564 carbamoyl phosphate s 98.3 6.6E-07 1.4E-11 91.7 4.9 108 99-211 221-344 (360)
43 PRK13566 anthranilate synthase 98.3 4.1E-07 8.8E-12 100.5 3.4 108 99-212 572-701 (720)
44 CHL00197 carA carbamoyl-phosph 98.2 1E-06 2.3E-11 90.9 4.9 108 99-211 236-358 (382)
45 cd01743 GATase1_Anthranilate_S 98.2 1.3E-06 2.7E-11 80.1 4.8 117 99-220 45-181 (184)
46 PF00117 GATase: Glutamine ami 98.0 9E-07 1.9E-11 80.8 -1.1 123 94-220 40-186 (192)
47 PRK00758 GMP synthase subunit 97.8 1.3E-05 2.9E-10 73.5 2.7 106 98-212 43-167 (184)
48 PRK06490 glutamine amidotransf 97.7 1.8E-05 4E-10 76.5 2.9 117 94-212 50-184 (239)
49 PRK09065 glutamine amidotransf 97.7 5.3E-05 1.1E-09 73.1 5.0 112 99-212 57-191 (237)
50 cd01745 GATase1_2 Subgroup of 97.7 0.00011 2.5E-09 68.1 7.0 89 117-220 88-186 (189)
51 PLN02347 GMP synthetase 97.5 5.4E-05 1.2E-09 81.4 3.5 186 99-286 56-284 (536)
52 cd01742 GATase1_GMP_Synthase T 97.5 6.7E-05 1.4E-09 68.2 3.5 109 99-212 44-170 (181)
53 PRK07567 glutamine amidotransf 97.5 0.00024 5.1E-09 68.9 7.0 116 96-213 51-196 (242)
54 PRK11366 puuD gamma-glutamyl-g 97.3 0.0002 4.3E-09 69.9 3.4 90 122-211 99-227 (254)
55 COG0505 CarA Carbamoylphosphat 97.1 0.0009 2E-08 68.8 6.7 102 100-210 224-345 (368)
56 TIGR00888 guaA_Nterm GMP synth 97.0 0.00093 2E-08 61.6 5.2 106 99-211 44-169 (188)
57 cd01741 GATase1_1 Subgroup of 96.8 0.0013 2.8E-08 60.2 4.0 112 95-208 45-180 (188)
58 PRK00074 guaA GMP synthase; Re 96.5 0.0019 4.1E-08 69.1 3.4 159 98-262 48-236 (511)
59 PRK13141 hisH imidazole glycer 96.5 0.0014 3E-08 61.3 2.0 93 118-211 61-188 (205)
60 PRK13527 glutamine amidotransf 96.4 0.0015 3.3E-08 61.0 2.0 123 95-219 43-193 (200)
61 PRK05665 amidotransferase; Pro 96.4 0.01 2.2E-07 57.7 7.4 138 95-241 57-217 (240)
62 TIGR01855 IMP_synth_hisH imida 96.3 0.0045 9.7E-08 57.9 4.4 49 101-152 40-107 (196)
63 CHL00188 hisH imidazole glycer 96.3 0.003 6.4E-08 60.3 3.1 120 97-221 39-205 (210)
64 PRK13181 hisH imidazole glycer 96.2 0.0051 1.1E-07 57.4 3.9 52 98-152 38-107 (199)
65 PRK13152 hisH imidazole glycer 96.1 0.003 6.6E-08 59.1 2.1 114 99-221 40-197 (201)
66 PRK13170 hisH imidazole glycer 96.0 0.0061 1.3E-07 57.1 3.8 115 99-221 41-192 (196)
67 cd01748 GATase1_IGP_Synthase T 96.0 0.0034 7.3E-08 58.3 1.9 48 100-152 40-107 (198)
68 PRK08250 glutamine amidotransf 95.8 0.0056 1.2E-07 59.1 2.6 111 99-212 48-185 (235)
69 cd01747 GATase1_Glutamyl_Hydro 95.6 0.013 2.8E-07 58.0 4.1 60 100-161 58-125 (273)
70 PRK08136 glycosyl transferase 95.4 0.12 2.6E-06 52.6 10.4 126 98-240 8-151 (317)
71 PRK07053 glutamine amidotransf 95.1 0.017 3.6E-07 56.0 3.3 116 95-213 47-184 (234)
72 COG0518 GuaA GMP synthase - Gl 95.0 0.01 2.2E-07 56.5 1.4 110 99-211 48-179 (198)
73 PRK09071 hypothetical protein; 94.9 0.33 7.2E-06 49.5 11.8 123 98-240 9-149 (323)
74 cd01746 GATase1_CTP_Synthase T 94.6 0.074 1.6E-06 51.7 6.2 55 93-152 52-108 (235)
75 PRK14004 hisH imidazole glycer 94.6 0.035 7.6E-07 53.0 3.8 47 97-146 37-90 (210)
76 TIGR00337 PyrG CTP synthase. C 94.0 0.12 2.6E-06 56.0 6.7 50 98-152 345-396 (525)
77 TIGR03800 PLP_synth_Pdx2 pyrid 93.9 0.018 3.9E-07 53.7 0.2 122 94-218 35-181 (184)
78 cd01749 GATase1_PB Glutamine A 93.2 0.036 7.8E-07 51.3 1.0 99 119-218 59-181 (183)
79 PRK07394 hypothetical protein; 91.9 1.3 2.9E-05 45.4 10.5 125 98-239 10-156 (342)
80 PRK13146 hisH imidazole glycer 91.1 0.11 2.4E-06 49.2 1.6 98 118-221 65-203 (209)
81 PF04282 DUF438: Family of unk 90.9 1.7 3.7E-05 35.4 8.1 56 215-280 2-57 (71)
82 PF02885 Glycos_trans_3N: Glyc 90.0 0.52 1.1E-05 37.0 4.3 46 107-169 12-57 (66)
83 PRK13525 glutamine amidotransf 89.7 0.25 5.3E-06 46.2 2.7 96 120-216 63-180 (189)
84 PRK13143 hisH imidazole glycer 88.0 0.28 6E-06 46.0 1.7 34 118-152 60-107 (200)
85 COG0547 TrpD Anthranilate phos 87.8 5.5 0.00012 41.3 11.1 110 108-240 15-147 (338)
86 PRK05380 pyrG CTP synthetase; 83.1 2.8 6.1E-05 45.8 6.6 47 99-150 346-394 (533)
87 PRK14607 bifunctional glutamin 82.6 15 0.00033 39.9 12.0 113 107-240 205-338 (534)
88 PRK00188 trpD anthranilate pho 82.5 2.1 4.6E-05 43.7 5.2 110 106-240 12-145 (339)
89 PRK05703 flhF flagellar biosyn 80.4 41 0.00089 35.6 13.9 142 230-383 160-313 (424)
90 PRK09522 bifunctional glutamin 78.4 9.9 0.00022 41.5 8.9 114 106-240 209-343 (531)
91 KOG3179 Predicted glutamine sy 75.9 3.4 7.4E-05 40.4 4.0 168 77-263 40-239 (245)
92 TIGR01245 trpD anthranilate ph 73.7 6.1 0.00013 40.3 5.4 113 106-240 6-141 (330)
93 PLN02641 anthranilate phosphor 72.7 31 0.00067 35.7 10.3 111 107-240 14-145 (343)
94 PRK00771 signal recognition pa 71.8 1.2E+02 0.0025 32.6 14.6 151 214-382 4-188 (437)
95 TIGR03499 FlhF flagellar biosy 70.0 1.2E+02 0.0026 30.1 13.5 146 215-377 116-280 (282)
96 KOG0370 Multifunctional pyrimi 68.7 4.9 0.00011 46.8 3.8 105 99-212 213-337 (1435)
97 PLN02617 imidazole glycerol ph 63.2 10 0.00023 41.5 4.9 43 100-145 47-96 (538)
98 PRK13142 hisH imidazole glycer 63.1 6.6 0.00014 37.4 3.0 44 98-145 38-87 (192)
99 COG2071 Predicted glutamine am 60.7 5.9 0.00013 39.3 2.2 87 126-212 104-222 (243)
100 TIGR02644 Y_phosphoryl pyrimid 57.9 83 0.0018 33.5 10.2 156 105-282 9-183 (405)
101 TIGR03481 HpnM hopanoid biosyn 56.9 30 0.00065 32.9 6.3 65 215-286 34-98 (198)
102 PRK14723 flhF flagellar biosyn 52.6 3.5E+02 0.0075 31.4 14.6 148 228-393 122-287 (767)
103 PF11829 DUF3349: Protein of u 52.0 24 0.00051 30.5 4.2 69 209-283 19-87 (96)
104 PRK04350 thymidine phosphoryla 48.0 1.1E+02 0.0023 33.6 9.3 185 60-282 58-260 (490)
105 TIGR01425 SRP54_euk signal rec 45.5 2.1E+02 0.0046 30.7 11.0 153 214-383 8-196 (429)
106 PRK10416 signal recognition pa 45.5 3.5E+02 0.0076 27.6 14.9 155 215-382 31-209 (318)
107 PRK12724 flagellar biosynthesi 45.0 4.4E+02 0.0094 28.6 13.7 81 296-382 226-312 (432)
108 PRK12726 flagellar biosynthesi 42.8 3E+02 0.0066 29.5 11.5 133 235-383 146-299 (407)
109 PRK15117 ABC transporter perip 40.7 96 0.0021 29.8 7.0 64 216-286 36-102 (211)
110 COG2854 Ttg2D ABC-type transpo 40.4 40 0.00088 32.7 4.3 70 210-286 32-104 (202)
111 PRK11889 flhF flagellar biosyn 39.6 4.3E+02 0.0094 28.7 12.1 147 234-396 181-348 (436)
112 PRK12723 flagellar biosynthesi 39.3 4.9E+02 0.011 27.5 12.7 152 227-395 105-281 (388)
113 PF05494 Tol_Tol_Ttg2: Toluene 39.2 42 0.00091 30.5 4.1 64 216-286 6-72 (170)
114 PRK14722 flhF flagellar biosyn 38.1 5.1E+02 0.011 27.4 13.2 142 234-394 77-240 (374)
115 PRK05820 deoA thymidine phosph 38.0 28 0.0006 37.4 3.1 224 102-350 9-260 (440)
116 PRK05368 homoserine O-succinyl 37.0 66 0.0014 32.9 5.4 127 96-226 100-255 (302)
117 PLN02327 CTP synthase 36.1 40 0.00088 37.3 4.0 54 93-152 360-415 (557)
118 COG0563 Adk Adenylate kinase a 35.9 99 0.0022 28.8 6.1 96 296-397 3-106 (178)
119 TIGR02645 ARCH_P_rylase putati 35.4 2.1E+02 0.0045 31.5 9.1 156 105-282 94-265 (493)
120 PF06844 DUF1244: Protein of u 34.7 19 0.00042 29.2 1.0 36 224-260 28-65 (68)
121 TIGR01431 adm_rel adenosine de 32.1 78 0.0017 34.3 5.3 133 223-367 226-371 (479)
122 cd01554 EPT-like Enol pyruvate 32.0 1.6E+02 0.0035 30.0 7.4 106 249-356 8-129 (408)
123 PF13344 Hydrolase_6: Haloacid 30.2 42 0.0009 28.2 2.3 57 296-355 3-59 (101)
124 smart00845 GatB_Yqey GatB doma 29.2 80 0.0017 28.3 4.1 62 212-284 41-103 (147)
125 PRK12727 flagellar biosynthesi 29.0 8E+02 0.017 27.6 12.3 133 236-386 297-445 (559)
126 PHA00438 hypothetical protein 26.5 98 0.0021 26.0 3.8 50 227-283 31-80 (81)
127 KOG1622 GMP synthase [Nucleoti 26.4 2.6E+02 0.0057 30.7 7.9 135 129-264 88-253 (552)
128 cd08324 CARD_NOD1_CARD4 Caspas 26.3 3.8E+02 0.0082 22.9 7.3 56 215-283 17-72 (85)
129 PF02374 ArsA_ATPase: Anion-tr 26.0 46 0.00099 33.6 2.2 46 296-349 4-49 (305)
130 PRK06078 pyrimidine-nucleoside 25.9 77 0.0017 34.1 3.9 215 106-349 12-256 (434)
131 PRK12337 2-phosphoglycerate ki 25.1 9.2E+02 0.02 26.5 11.8 101 218-328 184-284 (475)
132 cd01555 UdpNAET UDP-N-acetylgl 24.7 2.2E+02 0.0048 28.9 6.9 100 256-355 14-128 (400)
133 cd08783 Death_MALT1 Death doma 24.2 4.8E+02 0.011 22.8 8.0 62 212-282 22-85 (97)
134 PF07308 DUF1456: Protein of u 23.3 1.3E+02 0.0028 24.3 3.9 56 218-281 4-62 (68)
135 KOG1097 Adenine deaminase/aden 23.2 53 0.0011 35.0 2.1 99 223-335 150-251 (399)
136 COG3492 Uncharacterized protei 23.2 69 0.0015 27.8 2.4 38 224-262 59-98 (104)
137 PF04227 Indigoidine_A: Indigo 23.0 1.2E+02 0.0026 31.1 4.5 109 267-385 60-183 (293)
138 PF08069 Ribosomal_S13_N: Ribo 22.6 1.1E+02 0.0025 24.3 3.3 28 227-261 27-54 (60)
139 COG4003 Uncharacterized protei 22.2 1.5E+02 0.0032 25.5 4.1 52 203-268 28-79 (98)
140 cd01556 EPSP_synthase EPSP syn 21.8 3.3E+02 0.0071 27.5 7.4 107 249-357 8-129 (409)
141 COG1703 ArgK Putative periplas 21.0 6.5E+02 0.014 26.3 9.3 43 295-342 53-97 (323)
142 PRK05362 phosphopentomutase; P 21.0 1.7E+02 0.0037 31.1 5.3 110 262-381 163-289 (394)
143 PRK09369 UDP-N-acetylglucosami 20.8 2.7E+02 0.0059 28.6 6.7 106 249-355 19-139 (417)
144 TIGR01072 murA UDP-N-acetylglu 20.7 2.8E+02 0.006 28.4 6.7 98 256-354 25-137 (416)
145 TIGR02238 recomb_DMC1 meiotic 20.7 2.7E+02 0.0058 28.4 6.5 56 296-354 99-158 (313)
146 TIGR03327 AMP_phos AMP phospho 20.2 1.2E+02 0.0025 33.4 4.0 187 59-284 63-268 (500)
No 1
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.2e-67 Score=550.50 Aligned_cols=302 Identities=16% Similarity=0.179 Sum_probs=266.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh--hhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF--WPL 175 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~--~~~ 175 (417)
.|++||||+.| ++++.+.+. ++++..++|++| |+|||.|+.+||+.+.|. ..+.||+.+.-+...-..| .|.
T Consensus 51 ~IIlSpGPg~p---~d~~~~~~i-~~~~~~~iPILGIClG~QlLa~a~GG~V~~~-~~~~~G~~~~i~~~~~~lf~~~~~ 125 (531)
T PRK09522 51 VLMLSPGPGVP---SEAGCMPEL-LTRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKASSIEHDGQAMFAGLTN 125 (531)
T ss_pred EEEEcCCCCCh---hhCCCCHHH-HHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC-CceeeeeEEEEeecCCccccCCCC
Confidence 69999999999 677666555 887888999999 999999999999999997 7788877542211100011 111
Q ss_pred ----------hhhhCCCceEEEeCCCCccccCCCCC----CCccCCCCC---------------------ccCcHHHHHH
Q 014848 176 ----------LMRALPPDVIFIADPEGSIMGGGGSI----GPHYSGNDP---------------------REMRLVGALR 220 (417)
Q Consensus 176 ----------l~~~Lp~~~~f~a~~~G~iMg~~~~~----G~qf~~~~~---------------------~~m~l~~iIk 220 (417)
.+..+|+.+.++|..||.+|+++|+. |+||||++. ++.+++++|+
T Consensus 126 ~~~v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~ 205 (531)
T PRK09522 126 PLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILE 205 (531)
T ss_pred CcEEEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 11468999999998899999999976 999998754 5677999999
Q ss_pred HHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCceeeC
Q 014848 221 EVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYG 300 (417)
Q Consensus 221 kl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~LD~~G 300 (417)
++.++++||++||+++|+.|+ +|+++|.|+||||++||+||||.|||+||++||+++..+++.++...+|+||
T Consensus 206 ~~~~~~~Lt~eea~~~~~~il-------~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~~iD~~g 278 (531)
T PRK09522 206 KLYQAQTLSQQESHQLFSAVV-------RGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVG 278 (531)
T ss_pred HhhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCcccccC
Confidence 999999999999999999999 9999999999999999999999999999999999988665432222489999
Q ss_pred CCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEEEEeCCcc
Q 014848 301 EPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREA 380 (417)
Q Consensus 301 tgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~GfaFL~a~~~ 380 (417)
|||||++ ||||||++|+|+|++|++|+|||||++++|+| ++|+||+||++++++++++.++|++ .||+|+++|.|
T Consensus 279 tGgdg~~-t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~G--sadvlealGi~~~~~~~~~~~~l~~--~g~~fl~ap~~ 353 (531)
T PRK09522 279 TGGDGSN-SINISTASAFVAAACGLKVAKHGNRSVSSKSG--SSDLLAAFGINLDMNADKSRQALDE--LGVCFLFAPKY 353 (531)
T ss_pred CCCCCCC-CcccHHHHHHHHHhCCCcEEEeCCCCCCCCcc--HHHHHHHcCCCCCCCHHHHHHHHHH--hCcEEEEhhHh
Confidence 9999998 99999999999999999999999999999999 8999999999999999999999999 89999999999
Q ss_pred CHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 381 RPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 381 ~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
||+|++++++|++||+||+||++|||+||+++++||+
T Consensus 354 hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~ 390 (531)
T PRK09522 354 HTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALI 390 (531)
T ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEE
Confidence 9999999999999999999999999999999999875
No 2
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.9e-65 Score=533.24 Aligned_cols=302 Identities=20% Similarity=0.288 Sum_probs=267.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTFWP 174 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~~~ 174 (417)
.|++||||..| +++...++. ++.+...+|++| |+|||.|+.+||+.+.+. ..+.||++++-... .+..+.+
T Consensus 47 ~vIlsgGP~~p---~~~~~~~~l-i~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~-~~~~~G~~~~v~~~~~~lf~~~~~ 121 (534)
T PRK14607 47 HIVISPGPGRP---EEAGISVEV-IRHFSGKVPILGVCLGHQAIGYAFGGKIVHA-KRILHGKTSPIDHNGKGLFRGIPN 121 (534)
T ss_pred EEEECCCCCCh---hhCCccHHH-HHHhhcCCCEEEEcHHHHHHHHHcCCeEecC-CccccCCceeEEECCCcchhcCCC
Confidence 59999999999 677777776 787878899999 999999999999999998 67788887632110 1111111
Q ss_pred --------hh-h--hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCC-----------------ccCcHHHHHHH
Q 014848 175 --------LL-M--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP-----------------REMRLVGALRE 221 (417)
Q Consensus 175 --------~l-~--~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~-----------------~~m~l~~iIkk 221 (417)
.. + ..||+.+.+++ +++|.|||++|+. |+||+|++. .+++++++|++
T Consensus 122 ~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~~~~~~~~~i~~ 201 (534)
T PRK14607 122 PTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQREEIDIKSYLKK 201 (534)
T ss_pred CcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhhccCCHHHHHHH
Confidence 00 1 25899999998 8899999999976 999999853 46789999999
Q ss_pred HhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCceeeCC
Q 014848 222 VLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGE 301 (417)
Q Consensus 222 l~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~LD~~Gt 301 (417)
+.+|++||+|||+++|+.|+ +|+++|.|+||||++||+||||+||++||++||++++.+++.+..+.+|+|||
T Consensus 202 l~~g~~Lt~~ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~~~~D~~gt 274 (534)
T PRK14607 202 LVEGEDLSFEEAEDVMEDIT-------DGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGT 274 (534)
T ss_pred hccCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccC
Confidence 99999999999999999999 99999999999999999999999999999999999987664432225899999
Q ss_pred CCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEEEEeCCccC
Q 014848 302 PYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREAR 381 (417)
Q Consensus 302 gyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~GfaFL~a~~~~ 381 (417)
||||++ ||||||++|+|+|++|++|+|||||++++|+| ++|+||+||++++++++++.++|++ .||+|+++|.||
T Consensus 275 ggdg~~-t~nist~~a~v~A~~G~~V~kHG~r~~ss~~G--sadvle~lGv~~~~~~~~~~~~l~~--~g~~fl~ap~~~ 349 (534)
T PRK14607 275 GGDGFG-TFNISTTSAFVVAAAGVPVAKHGNRAVSSKSG--SADVLEALGVKLEMTPEEAASVLRE--TGFSFLFAPLFH 349 (534)
T ss_pred CCCCCC-ccccHHHHHHHHHhCCCcEEEECCCCCCCCcc--HHHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeeccccC
Confidence 999997 99999999999999999999999999999999 9999999999999999999999999 899999999999
Q ss_pred HHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 382 PSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 382 PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
|+|++++++|++||+||+||++|||+||++++++|+
T Consensus 350 p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~ 385 (534)
T PRK14607 350 PAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIV 385 (534)
T ss_pred HHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEE
Confidence 999999999999999999999999999999999874
No 3
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-57 Score=451.61 Aligned_cols=193 Identities=22% Similarity=0.304 Sum_probs=184.8
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014848 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (417)
Q Consensus 213 m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~ 292 (417)
|.+.++|+++.+|++|+++||+++|+.|+ +|+++|.|+||||+|||+||||.+||+||++||++++.+++.+.
T Consensus 2 ~~~~~~l~kl~~g~~L~~~eA~~l~~~il-------~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~ 74 (338)
T COG0547 2 MDLRKILKKLGRGRDLDREEARELFKAIL-------SGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPA 74 (338)
T ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCC
Confidence 67899999999999999999999999999 99999999999999999999999999999999999877665543
Q ss_pred CCCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcE
Q 014848 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (417)
Q Consensus 293 ~~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~Gf 372 (417)
...+|+|||||||.+ ||||||++|+|+|++|+||+|||||++|||+| ++|+|++|||+++++++++.++|++ .||
T Consensus 75 ~~~vDi~GTGGDg~~-T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksG--saDvleaLGv~l~~~~e~~~~~l~~--~g~ 149 (338)
T COG0547 75 ADPVDIVGTGGDGAN-TINISTAAAIVAAAAGVPVAKHGNRSVSSKSG--SADVLEALGVNLELSPEQAARALEE--TGI 149 (338)
T ss_pred CCCCCeecCCCCCCC-cccchHHHHHHHHhCCCcEEeECCCCCCCCCc--HHHHHHHcCCCCCCCHHHHHHHHHh--cCe
Confidence 323899999999999 99999999999999999999999999999999 8999999999999999999999999 899
Q ss_pred EEEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 373 aFL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
+|||+|.|||+|+++.++|++||+||+||++|||+||+++++||+
T Consensus 150 ~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qli 194 (338)
T COG0547 150 GFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLI 194 (338)
T ss_pred EEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999999975
No 4
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-56 Score=446.14 Aligned_cols=196 Identities=29% Similarity=0.384 Sum_probs=183.5
Q ss_pred CcHHHHHHHHhcCC----CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCC
Q 014848 213 MRLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (417)
Q Consensus 213 m~l~~iIkkl~~G~----~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~ 288 (417)
-+++++|+++++|+ +||++||+++|+.|+ +|+++|.|+||||++||+||||+|||+||++||++++.++
T Consensus 3 ~~~~~~i~~l~~g~~~~~~Lt~eea~~~~~~il-------~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~ 75 (342)
T PRK07394 3 ERFRELLKKVGSGEHTSKDLTREEAADALKLML-------LGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKL 75 (342)
T ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCC
Confidence 35789999999995 999999999999999 9999999999999999999999999999999999988665
Q ss_pred CCCCC-CCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCC-CHHHHHHHHh
Q 014848 289 PVADV-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL-SVLQAKELLE 366 (417)
Q Consensus 289 ~~~~~-~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~l-s~eea~~~Le 366 (417)
+.+.. ..+|+|||||||+++||||||++|+|+|++|++|+|||||+++||+|+||+|+||+||++++. +++++.++|+
T Consensus 76 ~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 76 QSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFE 155 (342)
T ss_pred CCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 43211 247999999999866999999999999999999999999999999999999999999999998 9999999999
Q ss_pred hcCCcEEEEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCC-CCCCcccC
Q 014848 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQF-VRVSHIVY 417 (417)
Q Consensus 367 ~~~~GfaFL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNP-a~a~~~v~ 417 (417)
+ .||+||++|.|||+|+++.++|++||+||+|||+|||+|| +++++||+
T Consensus 156 ~--~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~ 205 (342)
T PRK07394 156 Q--TGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVS 205 (342)
T ss_pred H--cCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEE
Confidence 9 8999999999999999999999999999999999999999 68888874
No 5
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=2.9e-54 Score=429.25 Aligned_cols=192 Identities=19% Similarity=0.197 Sum_probs=180.3
Q ss_pred CcHHHHHHHHhcC----CCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCC
Q 014848 213 MRLVGALREVLAG----GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (417)
Q Consensus 213 m~l~~iIkkl~~G----~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~ 288 (417)
|+|.++|+++++| ++||+|||+++|+.|| +|+++|.|+||||++||+||||+|||+||++||++++.++
T Consensus 1 ~~~~~~i~~l~~G~~~~~~Lt~eEA~~~~~~il-------~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~ 73 (317)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYGAML-------DGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPL 73 (317)
T ss_pred CCHHHHHHHHHCCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 7889999999999 8999999999999999 9999999999999999999999999999999999998765
Q ss_pred CCCC-CC-CceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHh
Q 014848 289 PVAD-VK-SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLE 366 (417)
Q Consensus 289 ~~~~-~~-~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le 366 (417)
+.+. .+ ++||||||||+ +||||||++|+|+|++|++|+|||||++++|+| ++||||+|||+++++++++.++|+
T Consensus 74 ~~~~~~~~~iD~~gtgGd~--~t~nist~aA~vlA~~G~~V~kHGnr~vssk~g--sadvleaLGi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 74 TPPAGRPMPVVIPSYNGAR--KQANLTPLLALLLAREGVPVLVHGVSEDPTRVT--SAEIFEALGIPPTLHADQAQAKLA 149 (317)
T ss_pred CCCCCCCceEEeCCCCCCC--CCcChHHHHHHHHHHCCCeEEEECCCCCCCccc--HHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4321 12 58999888874 399999999999999999999999999999988 999999999999999999999999
Q ss_pred hcCCcEEEEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCC--CCCCcccC
Q 014848 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQF--VRVSHIVY 417 (417)
Q Consensus 367 ~~~~GfaFL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNP--a~a~~~v~ 417 (417)
+ .||+|+++|.|||+|+++.++|++||+||+|||+|||+|| +++++||+
T Consensus 150 ~--~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~ 200 (317)
T PRK08136 150 E--GQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLS 200 (317)
T ss_pred h--cCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEE
Confidence 9 8999999999999999999999999999999999999999 68998874
No 6
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=6.3e-54 Score=430.71 Aligned_cols=190 Identities=19% Similarity=0.242 Sum_probs=180.7
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCC
Q 014848 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV 293 (417)
Q Consensus 214 ~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~ 293 (417)
.|+++|+++.+|++||+|||+++|+.|+ +| ++|.|+||||++||+||||.|||+||++||++++.+++.. .
T Consensus 3 ~~~~~l~~l~~g~~Lt~eEa~~~~~~il-------~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~-~ 73 (343)
T PLN02641 3 SFRQLIESLIQGTDLTEEEAEAALDFLL-------DD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL-V 73 (343)
T ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-C
Confidence 4789999999999999999999999999 87 9999999999999999999999999999999988655422 1
Q ss_pred CCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEE
Q 014848 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 373 (417)
Q Consensus 294 ~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~Gfa 373 (417)
+.+|||||||||++ ||||||++|+|+|++|++|+|||||+++|++| ++|+||+||++++++++++.++|++ .||+
T Consensus 74 ~~~D~~gtGGdg~~-t~nist~aa~v~A~~G~~V~kHGnr~~ss~~G--saDvLeaLGi~~~~~~~~~~~~l~~--~g~~ 148 (343)
T PLN02641 74 DAVDIVGTGGDGAN-TVNISTGSSILAAACGAKVAKQGNRSSSSACG--SADVLEALGVAIDLGPEGVKRCVEE--VGIG 148 (343)
T ss_pred CCCceeCCCCCCCC-ccccHHHHHHHHHhCCCeEEEeCCCCCCCccC--HHHHHHHcCCCCCCCHHHHHHHHHh--cCcE
Confidence 36899999999998 99999999999999999999999999999988 9999999999999999999999999 8999
Q ss_pred EEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 374 FL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
|+++|.|||+|++++++|++||+||+||++|||+||+++++||+
T Consensus 149 fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~ 192 (343)
T PLN02641 149 FMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVV 192 (343)
T ss_pred EEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEE
Confidence 99999999999999999999999999999999999999999874
No 7
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.8e-52 Score=418.69 Aligned_cols=192 Identities=21% Similarity=0.308 Sum_probs=183.3
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014848 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (417)
Q Consensus 213 m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~ 292 (417)
|+++++|+++.+|++||++||+++|+.|+ +|+++|.|+||||++||+||||+||++||++||+++..+.+.++
T Consensus 1 ~~~~~~i~~l~~g~~Lt~~Ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~ 73 (339)
T PRK00188 1 MTMKELLEKLVEGEDLSEEEAEELMDAIM-------SGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD 73 (339)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC
Confidence 67899999999999999999999999999 99999999999999999999999999999999999987654433
Q ss_pred CCCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcE
Q 014848 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (417)
Q Consensus 293 ~~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~Gf 372 (417)
+.+|+|||||||++ +|||||++|+|+|++|++|+|||||++++|+| ++|+||+||++++.+++++.++|++ .||
T Consensus 74 -~~iDi~gtggdg~~-t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~G--sadvLe~lGi~~~~~~~~~~~~l~~--~g~ 147 (339)
T PRK00188 74 -DAVDIVGTGGDGAN-TFNISTAAAFVAAAAGVKVAKHGNRSVSSKSG--SADVLEALGVNLDLSPEQVARCLEE--VGI 147 (339)
T ss_pred -CCCcccCCCCCCCC-ccchHHHHHHHHHhCCCEEEEECCCCCCCCcC--HHHHHHHcCCCCCCCHHHHHHHHHH--cCc
Confidence 36899999999996 99999999999999999999999999999999 8999999999999999999999999 899
Q ss_pred EEEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 373 aFL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
+|++++.|||+|++++++|++||+||+|||+|||+||++++++|+
T Consensus 148 ~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~ 192 (339)
T PRK00188 148 GFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLI 192 (339)
T ss_pred EEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEE
Confidence 999999999999999999999999999999999999999999874
No 8
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=9.2e-52 Score=412.17 Aligned_cols=190 Identities=25% Similarity=0.313 Sum_probs=177.1
Q ss_pred CcHHHHHHHHhcCC----CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCC
Q 014848 213 MRLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (417)
Q Consensus 213 m~l~~iIkkl~~G~----~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~ 288 (417)
|++.++|+++++|+ +||+|||+++|+.|+ +|+++|.|+||||++||+||||+||++||++||++++.++
T Consensus 2 ~~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~ 74 (323)
T PRK09071 2 HPFAEYIRILGKGKRGRRSLTREEARQAMGMIL-------DGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAP 74 (323)
T ss_pred CcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 68999999999998 999999999999999 9999999999999999999999999999999999998765
Q ss_pred CCCCCCCcee-eCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhh
Q 014848 289 PVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLED 367 (417)
Q Consensus 289 ~~~~~~~LD~-~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~ 367 (417)
+.+ .++|| ||||+|+.. +|++++|+|+|++|++|+|||||+++||+| +++|+||+|||+++.+++++.++|++
T Consensus 75 ~~~--~~iD~~~gtG~d~~~---~~~~~~a~vlA~~G~~V~kHGnr~~ssk~g-~saDvLeaLGv~~~~~~~~~~~~l~~ 148 (323)
T PRK09071 75 PLA--VDLDWPSYAGKRRHL---PWYLLAAKLLAQNGYRVLLHGGGGHTAGRL-YTEQLLEALGIPIARSWQEAEQALEE 148 (323)
T ss_pred CCC--CceecCCcCCCCCCc---ccHHHHHHHHHHCCCeEEEECCCCCCCCcc-cHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence 422 25898 888887444 556899999999999999999999999974 58999999999999999999999999
Q ss_pred cCCcEEEEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 368 EEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 368 ~~~GfaFL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
.||+|+++|.|||+|++++++|++||+||+|||+|||+||+++++||+
T Consensus 149 --~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~ 196 (323)
T PRK09071 149 --HNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQ 196 (323)
T ss_pred --cCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEE
Confidence 899999999999999999999999999999999999999999999975
No 9
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=5.2e-51 Score=407.03 Aligned_cols=187 Identities=18% Similarity=0.266 Sum_probs=176.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCC-CCCCce
Q 014848 219 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA-DVKSLT 297 (417)
Q Consensus 219 Ikkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~-~~~~LD 297 (417)
|+++.+|++||++||+++|+.|+ +|+++|.|+|||||+||+||||.||++||++||+++..+++.+ ....+|
T Consensus 1 l~~~~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD 73 (330)
T TIGR01245 1 LEKLIDGKDLSRDEAEQLMKEIM-------SGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVD 73 (330)
T ss_pred CchhhcCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCccc
Confidence 35788999999999999999999 9999999999999999999999999999999999988665432 222589
Q ss_pred eeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEEEEeC
Q 014848 298 HYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL 377 (417)
Q Consensus 298 ~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~GfaFL~a 377 (417)
+|||||||++ +|||||++|+|+|++|++|+|||||++++|+| ++|+||+||++++.+++++.++|++ .||||+++
T Consensus 74 ~~gtggdg~~-t~nist~~a~vlA~~G~~V~kHG~r~~~s~~G--s~d~le~LGi~~~~s~~~~~~~l~~--~g~~f~~~ 148 (330)
T TIGR01245 74 IVGTGGDGAN-TINISTASAFVAAAAGVKVAKHGNRSVSSKSG--SADVLEALGVNLDLGPEKVARSLEE--TGIGFLFA 148 (330)
T ss_pred ccCCCCCCCC-ccccHHHHHHHHHhCCCEEEEeCCCCCCCCcc--HHHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeec
Confidence 9999999997 99999999999999999999999999999999 8999999999999999999999999 89999999
Q ss_pred CccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 378 REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 378 ~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
|.|||+|++++++|++||+||+|||+|||+||++++++|+
T Consensus 149 ~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~ 188 (330)
T TIGR01245 149 PLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVI 188 (330)
T ss_pred hhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEE
Confidence 9999999999999999999999999999999999999874
No 10
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=1.2e-42 Score=357.64 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=174.4
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014848 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (417)
Q Consensus 213 m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~ 292 (417)
|++.++|+++.+|++||++|++++|+.|+ +|+++|+|++||||++++||||.+|++++++||++...+++.+.
T Consensus 1 m~~~~iI~k~~~g~~Lt~eE~~~~~~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~ 73 (434)
T PRK06078 1 MRMVDLIQKKRDGKELTTEEINFFIEGYT-------NGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSA 73 (434)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcc
Confidence 67899999999999999999999999999 99999999999999999999999999999999998877665432
Q ss_pred CC--CceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHhhcC
Q 014848 293 VK--SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (417)
Q Consensus 293 ~~--~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaL-Gi~i~ls~eea~~~Le~~~ 369 (417)
.+ .+|.|||||||++ ||| ++|+++|+||++|+|||||+++|++| ++|+||+| |++++++++++.++|++
T Consensus 74 ~~~~~vD~~gTGGdG~k-t~n---i~a~ivAA~Gv~VaKhgnR~lss~~G--TaD~LE~lpG~~~~ls~e~~~~~l~~-- 145 (434)
T PRK06078 74 IEGIKVDKHSTGGVGDT-TTL---VLAPLVAAFGVPVAKMSGRGLGHTGG--TIDKLESIKGFHVEISQEDFIKLVNE-- 145 (434)
T ss_pred cCCCeeEecCCCCCCCC-chH---HHHHHHHcCCCCeeeeCCCCcCCCcc--hHHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 22 5899999999999 888 48999999999999999999999999 99999999 99999999999999999
Q ss_pred CcEEEEeC-CccCHHhhhhHHHhhhhCCCChhhhhhhccCC--------CCCCcccC
Q 014848 370 IGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQF--------VRVSHIVY 417 (417)
Q Consensus 370 ~GfaFL~a-~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNP--------a~a~~~v~ 417 (417)
.||+|++| |.|||+|++++++|++++. ||.+ ||+|| ++++++|+
T Consensus 146 ~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-PLi~~SImSKKlAag~~~~vl 198 (434)
T PRK06078 146 NKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-PLIASSIMSKKIAAGADAIVL 198 (434)
T ss_pred hCcEEEccCCCcChhhhhhHHHhccccc---cChH-HhhhhHhhhhhhhcCCCeEEE
Confidence 89999995 9999999999999999994 9999 99999 99999875
No 11
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=5.7e-41 Score=342.94 Aligned_cols=177 Identities=18% Similarity=0.166 Sum_probs=166.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC--C
Q 014848 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD--V 293 (417)
Q Consensus 216 ~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~--~ 293 (417)
.++|+++.+|++||+||++++|+.|+ +|+++|+|++||||++|+||||.||+++|++||++...+++.+. .
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~ 74 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYT-------NGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPG 74 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCC
Confidence 46899999999999999999999999 99999999999999999999999999999999998876664432 2
Q ss_pred CCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCC-CCCCCCHHHHHHHHhhcCCcE
Q 014848 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDEEIGF 372 (417)
Q Consensus 294 ~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLG-i~i~ls~eea~~~Le~~~~Gf 372 (417)
+.+|.|||||||++ +||++|+++|++|++|+|||||+++|++| ++|+||+|| ++++++++++.+++++ +||
T Consensus 75 ~~vD~~gTGGdG~~----iSt~~a~ivAa~Gv~VaKhgnR~lss~~G--TaD~LE~lgG~~v~ls~e~~~~~l~~--~G~ 146 (405)
T TIGR02644 75 PKVDKHSTGGVGDK----VSLVLGPIVAACGVKVAKMSGRGLGHTGG--TIDKLESIPGFRTELSEAEFIEIVNK--VGL 146 (405)
T ss_pred CeeEEeCCCCCCCC----chHHHHHHHHhCCCCEEeeCCCCCCCcch--HHHHHHhcCCCCCCCCHHHHHHHHHH--cCe
Confidence 25899999999996 99999999999999999999999999999 999999998 9999999999999999 899
Q ss_pred EEEeCC-ccCHHhhhhHHHhhhhCCCChhhhhhhccCCCC
Q 014848 373 AYVSLR-EARPSLYSLIGLREHIKKRPPVATSEKVQQFVR 411 (417)
Q Consensus 373 aFL~a~-~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~ 411 (417)
||++|+ .++|++++++++|++++ |++|+ ||+||.-
T Consensus 147 ~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSi 182 (405)
T TIGR02644 147 AIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSI 182 (405)
T ss_pred EEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHH
Confidence 999999 89999999999999999 99999 9999976
No 12
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=2e-39 Score=337.42 Aligned_cols=186 Identities=20% Similarity=0.202 Sum_probs=172.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014848 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (417)
Q Consensus 216 ~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~ 295 (417)
.++|+++.+|++||++|++++|+.|+ +|+++|+|++|||||+++||||.+|++++++||++...+++.+..+.
T Consensus 82 ~~~I~kk~~G~~Ls~eE~~~~i~~i~-------~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~~~~~~ 154 (490)
T PRK04350 82 LSAIRKKIDGEKLDKEEIEAIIRDIV-------AGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDWDRPPV 154 (490)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCCCCCe
Confidence 36899999999999999999999999 99999999999999999999999999999999998877664432235
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~GfaFL 375 (417)
+|.|||||||.+ ++ |+.+++++|++|++|+|||||+++|++| ++|+||+|| +++++++++++++++ .|+||+
T Consensus 155 vDkhgTGGd~g~-t~--S~~~apivAA~Gv~VaKhgnRaiss~sG--TaD~LEaLg-~v~ls~e~~~~~l~~--~G~~fl 226 (490)
T PRK04350 155 VDKHSIGGVPGN-RT--TLIVVPIVAAAGLTIPKTSSRAITSPAG--TADTMEVLA-PVDLSVEEIKRVVEK--VGGCLV 226 (490)
T ss_pred EEecCCCCCCCC-CE--eHHHHHHHHhCCCceeeecCCCCCCCCc--hHHHHHHhh-cCCCCHHHHHHHHHH--cCEEEE
Confidence 899999999777 44 7778999999999999999999999999 999999999 999999999999999 899999
Q ss_pred e--CCccCHHhhhhHHHhhhhCCCChhhhhhhccC--------------CCCCCccc
Q 014848 376 S--LREARPSLYSLIGLREHIKKRPPVATSEKVQQ--------------FVRVSHIV 416 (417)
Q Consensus 376 ~--a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlN--------------Pa~a~~~v 416 (417)
| ++.|||+|++++++|+.++++|++|++++++| |+++.++|
T Consensus 227 fG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~v 283 (490)
T PRK04350 227 WGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAKV 283 (490)
T ss_pred ECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCcC
Confidence 9 89999999999999999999999999999999 99887765
No 13
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=321.08 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=158.8
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014848 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (417)
Q Consensus 213 m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~ 292 (417)
|+++++|+++..|++||++|++++|+.|+ +|+++|+|++||||++|+||||.||+++|++||++....++.+.
T Consensus 2 m~~~~~I~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~ 74 (440)
T PRK05820 2 FLAQEIIRKKRDGGALSDEEIDWFIDGYT-------DGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSS 74 (440)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 78899999999999999999999999999 99999999999999999999999999999999998876654331
Q ss_pred ----CCCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHhh
Q 014848 293 ----VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 367 (417)
Q Consensus 293 ----~~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaL-Gi~i~ls~eea~~~Le~ 367 (417)
.+.+|.|||||||+ |+||++|+++|++|++|+|||||++++++| ++|+||.| |++++++++++.++|++
T Consensus 75 ~d~~~~~vDkhgTGGdG~----niS~~~a~ivAa~Gv~VaKhg~R~lss~~G--TaD~LE~LpG~~v~ls~e~~~~~l~~ 148 (440)
T PRK05820 75 LNLNGPIVDKHSTGGVGD----KISLMLAPMVAACGGYVPMISGRGLGHTGG--TLDKLEAIPGYRAFPSNDRFREILKD 148 (440)
T ss_pred ccCCCCeEEEcCCCCCCc----cHHHHHHHHHHhCCCCEEeeCCCCCCCccc--HHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 12489999999998 599999999999999999999999999999 99999999 99999999999999999
Q ss_pred cCCcEEEEeCC-ccCHHhhhhHHHhhhhCCC
Q 014848 368 EEIGFAYVSLR-EARPSLYSLIGLREHIKKR 397 (417)
Q Consensus 368 ~~~GfaFL~a~-~~~PaL~~l~~lRk~LG~R 397 (417)
.|++|++++ .|||++++++++|++++.=
T Consensus 149 --~G~~~~~~~~~l~PAdk~l~~lRdvt~tv 177 (440)
T PRK05820 149 --VGVAIIGQTSDLAPADKRLYALRDVTATV 177 (440)
T ss_pred --cCeEEEcCchhcChHHHHHHHHhcccCCC
Confidence 899999999 8999999999999987643
No 14
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=6e-36 Score=307.87 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=154.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCC--C
Q 014848 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA--D 292 (417)
Q Consensus 215 l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~--~ 292 (417)
+.++|+++.+|++||++|++++|+.++ +|+++|+|++|||||+++||||.+|++++++||++...+++.+ .
T Consensus 3 ~~~~I~kk~~G~~Lt~eE~~~~i~~i~-------~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~ 75 (437)
T TIGR02643 3 PQEIIRKKRDGHSLSDAEIAQFINGIT-------DGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLD 75 (437)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccc
Confidence 468999999999999999999999999 9999999999999999999999999999999999887666443 1
Q ss_pred --CCCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHhhcC
Q 014848 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (417)
Q Consensus 293 --~~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaL-Gi~i~ls~eea~~~Le~~~ 369 (417)
...+|.|||||||+ |+||++|+++|+||++|+|||||+++|++| ++|+||+| |++++++++++.++|++
T Consensus 76 ~~~~~vDkhgTGGdG~----niSt~~apivAA~Gv~VaKhgnR~iss~~G--TaD~LEalpG~~v~ls~e~~~~~l~~-- 147 (437)
T TIGR02643 76 LNGPVVDKHSTGGVGD----VVSLMLGPIVAACGGYVPMISGRGLGHTGG--TLDKLEAIPGYDIFPDPALFRRVVKD-- 147 (437)
T ss_pred cCCCeeEecCCCCCCc----chhHHHHHHHHhCCCCeeeecCCCcCCCCc--hHHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 12589999999998 599999999999999999999999999999 99999999 99999999999999999
Q ss_pred CcEEEEe-CCccCHHhhhhHHHhhhhC
Q 014848 370 IGFAYVS-LREARPSLYSLIGLREHIK 395 (417)
Q Consensus 370 ~GfaFL~-a~~~~PaL~~l~~lRk~LG 395 (417)
.||+|+. ++.++|++++++++|++.+
T Consensus 148 ~g~~f~gqa~~l~PADk~ly~lRDvt~ 174 (437)
T TIGR02643 148 VGVAIIGQTADLAPADKRFYATRDVTA 174 (437)
T ss_pred cCceEEccCCCcCcchhceeeeeeecC
Confidence 8999998 5789999999999998765
No 15
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=5.3e-35 Score=304.34 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=158.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014848 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (417)
Q Consensus 216 ~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~ 295 (417)
.++|+++.+|++||++|++++|+.|+ +|+++|+|++|||||+++||||.+|+.++++||++...+++....+.
T Consensus 87 ~~~I~kk~~G~~Lt~eE~~~ii~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~~~~~~ 159 (493)
T TIGR02645 87 LRAIRKKIDGAKLDQHEIASIVGDIV-------DERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEWDREPI 159 (493)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccCCCCCe
Confidence 45899999999999999999999999 99999999999999999999999999999999998876664432225
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~GfaFL 375 (417)
+|.||||||+.+ ++|+ .+++++|+||++|+|||||+++|++| ++|+||.|| +++++++++++++++ .|+||+
T Consensus 160 vDkhgTGGd~gn-k~ni--~~apIvAA~Gv~VaKhsnRaits~sG--TAD~LE~Lg-~v~ls~e~~~~~ve~--~G~~fl 231 (493)
T TIGR02645 160 MDKHSIGGVPGN-KTSL--IVVPIVAAAGLLIPKTSSRAITSAAG--TADTMEVLT-RVALSAEEIKRIVEK--VGGCLV 231 (493)
T ss_pred EEEeCCCCCCCC-CEeH--HHHHHHHhCCCCeeeeCCCCcCCCcc--HHHHHHHhc-CCCCCHHHHHHHHHH--CCEEEE
Confidence 899999999777 6666 47788899999999999999999999 999999999 999999999999999 899999
Q ss_pred e--CCccCHHhhhhHHHhhhhCCCChhhhhh
Q 014848 376 S--LREARPSLYSLIGLREHIKKRPPVATSE 404 (417)
Q Consensus 376 ~--a~~~~PaL~~l~~lRk~LG~RTifNtlg 404 (417)
+ ++.|||++++++++|+.+++.++=-++.
T Consensus 232 ~G~a~~l~PAdk~i~~vR~~l~vds~~li~a 262 (493)
T TIGR02645 232 WGGALNLAPADDVLIRVERPLSIDPRAQMLA 262 (493)
T ss_pred ECCCcccCHHHHHHHHHHhhcCCCcHHHHHH
Confidence 9 8999999999999999999998755443
No 16
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=9.8e-36 Score=285.72 Aligned_cols=118 Identities=24% Similarity=0.306 Sum_probs=108.4
Q ss_pred CceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcEEE
Q 014848 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374 (417)
Q Consensus 295 ~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~GfaF 374 (417)
.+|+|||||||.+ ||||||++|+++|++|++|+|||||++++|+| ++|+||+||+++++++++++++|++ +||+|
T Consensus 3 ~~D~~gTGGd~~~-t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~G--s~dvLe~LGv~~~~~~~~~~~~l~~--~g~~f 77 (252)
T PF00591_consen 3 VVDICGTGGDGDK-TFNISTAAAIVLAAAGVPVAKHGNRGVTSKSG--SADVLEALGVPIDLSPEEAQAQLEE--TGIAF 77 (252)
T ss_dssp EEEEEESSCSSST-BHHHHHHHHHHHHHTTSEEEEEEESGCTTSSS--HHHHHHHSTB-TT--HHHHHHHHHH--HSEEE
T ss_pred ceEEecCCCCCCC-ceehHHHHHHHHHccCCcEecccCCCcccccc--HHHHHHhcCCCcCCCHHHHHHHhhc--cCeEE
Confidence 4799999999999 99999999999999999999999999999999 8999999999999999999999999 89999
Q ss_pred EeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 375 VSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 375 L~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
+++|.|||+|+++.++|++||+||+||++|||+||++++++|+
T Consensus 78 l~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~ 120 (252)
T PF00591_consen 78 LFAPNFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVI 120 (252)
T ss_dssp EEHHHHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEE
T ss_pred ecchhcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEE
Confidence 9999999999999999999999999999999999999999874
No 17
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=5.1e-34 Score=297.14 Aligned_cols=173 Identities=13% Similarity=0.151 Sum_probs=155.6
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014848 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (417)
Q Consensus 213 m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~ 292 (417)
..-.++|+++.+|++||++|++++|+.|+ +|+++|+|++|||||+++||||.+|++++++||++....++.+.
T Consensus 85 ~~s~~~I~kk~~G~~Ls~eEi~~ii~~i~-------~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~~~ 157 (500)
T TIGR03327 85 PESVEYIKKKMDGEKLTKDEIRAIVADIV-------DDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSFDR 157 (500)
T ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccCCC
Confidence 33457999999999999999999999999 99999999999999999999999999999999998876654432
Q ss_pred CCCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHhhcCCcE
Q 014848 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (417)
Q Consensus 293 ~~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls~eea~~~Le~~~~Gf 372 (417)
.+.+|.|||||||.+ +||++ +++++|+||++|+|||||+++|++| ++|+||.|+ +++++++++.+++++ .|+
T Consensus 158 ~~vvDkhgTGGd~gn-k~nl~--~apIVAA~Gv~VaKhsnRaits~sG--TaD~LEsL~-~v~ls~e~~~~~v~~--~G~ 229 (500)
T TIGR03327 158 HPIMDKHSIGGVPGN-KISLL--VVPIVAAAGLTIPKTSSRAITSAAG--TADVMEVLA-PVEFSADEIKRIVEK--TGG 229 (500)
T ss_pred CCeEEEeCCCCCCCC-CEEHH--HHHHHHhCCCCeeeeCCCCcCCCcc--HHHHHHHhh-CCCCCHHHHHHHHHH--CCE
Confidence 235899999999777 67774 6888899999999999999999999 999999995 999999999999999 899
Q ss_pred EEEe--CCccCHHhhhhHHHhhhhCCCChh
Q 014848 373 AYVS--LREARPSLYSLIGLREHIKKRPPV 400 (417)
Q Consensus 373 aFL~--a~~~~PaL~~l~~lRk~LG~RTif 400 (417)
||++ ++.|||++++++.+|+.+.+-++=
T Consensus 230 ~fl~Gqa~~l~PAdk~l~alrdt~tvds~~ 259 (500)
T TIGR03327 230 CLVWGGATNLAPADDKIIKVERPLSIDPRG 259 (500)
T ss_pred EEEECCccccCHHHHHHHHhccccCCCcHH
Confidence 9999 899999999999999977666543
No 18
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.1e-31 Score=258.09 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=113.4
Q ss_pred CceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCC-CCCCHHHHHHHHhhcCCcEE
Q 014848 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAS-TNLSVLQAKELLEDEEIGFA 373 (417)
Q Consensus 295 ~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~-i~ls~eea~~~Le~~~~Gfa 373 (417)
.+|++||||||.| |||+||.+|+|+|.||.+|+||||++.+|.+| ++|+|+.||++ ++..|+.+.++.++ .+|.
T Consensus 104 ~vDIVGTGGDG~N-TfNvST~saIvAag~GlkvcKhGnkaStSasG--saDll~~lGCd~l~v~p~~i~~~~e~--~~f~ 178 (373)
T KOG1438|consen 104 AVDIVGTGGDGAN-TFNVSTGSAIVAAGCGLKVCKHGNKASTSASG--SADLLEALGCDVLDVGPEGIKRCVEE--GGFG 178 (373)
T ss_pred eeEEeccCCCCcc-eeeecchHHHHHhcccchhhhcCCccccccCc--cHHHHHhcCceeeccCCccccccccc--Ccee
Confidence 4799999999999 99999999999999999999999999999999 99999999987 78999999999999 9999
Q ss_pred EEeCCccCHHhhhhHHHhhhhCCCChhhhhhhccCCCCCCcccC
Q 014848 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRVSHIVY 417 (417)
Q Consensus 374 FL~a~~~~PaL~~l~~lRk~LG~RTifNtlgpLlNPa~a~~~v~ 417 (417)
||++|-|||+|+.+.++||+||++|+||++|||+||++..|.++
T Consensus 179 Fl~aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~riv 222 (373)
T KOG1438|consen 179 FLMAPMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIV 222 (373)
T ss_pred EEechhhcccccchhHHHHhcCCccHHHhcccccCcchhhhhee
Confidence 99999999999999999999999999999999999999877654
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.90 E-value=1.5e-23 Score=213.84 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=155.0
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCC-CCCC
Q 014848 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP-PPVA 291 (417)
Q Consensus 213 m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~-~~~~ 291 (417)
|+..++|+|+++|+.||.+|++++++.+. +|.++|+|++||+||+.+||+|.+|++.++.||.+ ++. +...
T Consensus 2 ~~~v~iI~KKrdG~~L~~~EI~~~i~~~~-------~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~-SGe~ld~~ 73 (435)
T COG0213 2 MRSVEIIRKKRDGKALSKEEIEFFINGYV-------NGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVD-SGEVLDLS 73 (435)
T ss_pred CchHHHHHHhcccccCCHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCEEeec
Confidence 67899999999999999999999999999 99999999999999999999999999999999996 443 2222
Q ss_pred CC--CCceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHhhc
Q 014848 292 DV--KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDE 368 (417)
Q Consensus 292 ~~--~~LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaL-Gi~i~ls~eea~~~Le~~ 368 (417)
+. +.+|...|||-|++ +|+++++++|+||++|+|.++|++++.+| ..|.||.+ |++++++.++..+++.+
T Consensus 74 ~~~~~~vDKHStGGVgdk----~sL~l~PiVAA~Gl~VpK~SgRgLghtGG--T~DklEsi~g~~~~~~e~~fi~~~~~- 146 (435)
T COG0213 74 DIPGPVVDKHSTGGVGDK----TSLILVPIVAAAGLPVPKMSGRGLGHTGG--TLDKLESIPGVNLELDEIKFIEQVKD- 146 (435)
T ss_pred cCCCceecccCCCCCCcc----cchhHHHHHHhcCCcccccccCccccCcc--chhhhhccCCcccCcCHHHHHHHhhc-
Confidence 22 24788889999977 89999999999999999999999999777 68999999 99999999999999999
Q ss_pred CCcEEEEeCC-ccCHHhhhhHHHhhhhC-CCCh
Q 014848 369 EIGFAYVSLR-EARPSLYSLIGLREHIK-KRPP 399 (417)
Q Consensus 369 ~~GfaFL~a~-~~~PaL~~l~~lRk~LG-~RTi 399 (417)
.|++.+.|+ .+.|+.+++|.+|+.++ +-++
T Consensus 147 -~g~aiiGqs~~LaPADkklyalrdvtaTVdsi 178 (435)
T COG0213 147 -NGVAIIGQSGNLAPADKKLYALRDVTATVDSI 178 (435)
T ss_pred -CCeEEEeCcCCcCcccceeEEeeeccccCCcH
Confidence 899999998 69999999999999998 4443
No 20
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=1.2e-19 Score=169.74 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=97.9
Q ss_pred ccceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhh
Q 014848 97 QAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPL 175 (417)
Q Consensus 97 ~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~ 175 (417)
.-.|++||||++| ++||++++. |+++.+++|++| |+|||+||-+|||.+.|| +-|.|||.| ...+.|..
T Consensus 46 pd~iviSPGPG~P---~d~G~~~~~-i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a-~~~~HGK~s-----~i~h~g~~ 115 (191)
T COG0512 46 PDAIVISPGPGTP---KDAGISLEL-IRRFAGRIPILGVCLGHQAIAEAFGGKVVRA-KEPMHGKTS-----IITHDGSG 115 (191)
T ss_pred CCEEEEcCCCCCh---HHcchHHHH-HHHhcCCCCEEEECccHHHHHHHhCCEEEec-CCCcCCeee-----eeecCCcc
Confidence 4589999999999 899999999 899999999999 999999999999999999 899999999 77787777
Q ss_pred hh-------------------hhCCCceEEEe-C-CCCccccCCCCC----CCccCCCCCccCcHHHHHH
Q 014848 176 LM-------------------RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDPREMRLVGALR 220 (417)
Q Consensus 176 l~-------------------~~Lp~~~~f~a-~-~~G~iMg~~~~~----G~qf~~~~~~~m~l~~iIk 220 (417)
+| .++|+++.++| + .+|.|||++|+. |+||+|+|-....=.++|+
T Consensus 116 iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G~~il~ 185 (191)
T COG0512 116 LFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILTEYGHRILE 185 (191)
T ss_pred cccCCCCCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccccchHHHHH
Confidence 76 35899999998 3 446999999999 9999998765443333444
No 21
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.70 E-value=4.7e-17 Score=127.84 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=54.2
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 014848 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (417)
Q Consensus 214 ~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~ 285 (417)
+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||++|++||++||++++
T Consensus 1 ~~~~~l~~l~~g~~Ls~~e~~~~~~~i~-------~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 1 MIKEILKKLRDGEDLSREEAKAAFDAIL-------DGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHHH-------TTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999 9999999999999999999999999999999999864
No 22
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.44 E-value=5.9e-14 Score=129.52 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=92.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhh---h
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFW---P 174 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~---~ 174 (417)
.+.++|+|++| .+.|||+|+ ++++.+++|.+| |+|-|-|+-.||+++.||.-=+.||+.| -+.+++ .
T Consensus 66 ~LliSPGPG~P---~DsGIs~~~-i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S-----~i~~D~~~~~ 136 (223)
T KOG0026|consen 66 GLLISPGPGTP---QDSGISLQT-VLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSS-----MVHYDEKGEE 136 (223)
T ss_pred eEEecCCCCCC---ccccchHHH-HHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeecccc-----ccccCCcccc
Confidence 57899999999 899999999 899999999999 9999999999999999993246899999 889998 4
Q ss_pred hhh-------------------hhCC-CceEEEe-CCCCccccCCCCC-----CCccCCCCCcc
Q 014848 175 LLM-------------------RALP-PDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDPRE 212 (417)
Q Consensus 175 ~l~-------------------~~Lp-~~~~f~a-~~~G~iMg~~~~~-----G~qf~~~~~~~ 212 (417)
++| +.|| +++.+++ ..+|.|||.||+- |+||+|.+--.
T Consensus 137 G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlt 200 (223)
T KOG0026|consen 137 GLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIIT 200 (223)
T ss_pred ccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhh
Confidence 455 5677 7888888 8999999999987 99999976543
No 23
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.30 E-value=1.2e-12 Score=145.87 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=87.9
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLL 176 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l 176 (417)
-.|++||||++|-..++++++++. |+++ ..+|++| |+|||.|+.+|||.+.|+ +.|+||+.++. .+.+..|
T Consensus 133 d~IVlSPGPG~P~~~~d~Gi~~~~-i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~-~~~~HG~~s~I-----~h~~~~l 204 (918)
T PLN02889 133 DNIVISPGPGSPTCPADIGICLRL-LLEC-RDIPILGVCLGHQALGYVHGARIVHA-PEPVHGRLSEI-----EHNGCRL 204 (918)
T ss_pred CEEEECCCCCCccchHHHHHHHHH-HHHh-CCCcEEEEcHHHHHHHHhcCceEEeC-CCceeeeeeeE-----eecCchh
Confidence 369999999999888999999998 5555 4699999 999999999999999999 88999998843 3333333
Q ss_pred h-----------------------hhCCCceEEEe-CCC-----------------------------------------
Q 014848 177 M-----------------------RALPPDVIFIA-DPE----------------------------------------- 191 (417)
Q Consensus 177 ~-----------------------~~Lp~~~~f~a-~~~----------------------------------------- 191 (417)
| ..||++++++| +.+
T Consensus 205 F~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 284 (918)
T PLN02889 205 FDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTS 284 (918)
T ss_pred hcCCCcCCCCCceEEeCCCcccccCCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccc
Confidence 2 35788888887 333
Q ss_pred ------------CccccCCCCC----CCccCCCCCcc
Q 014848 192 ------------GSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 192 ------------G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
|.|||++|++ |+||||++.-.
T Consensus 285 ~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi~t 321 (918)
T PLN02889 285 WPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESIAT 321 (918)
T ss_pred cccccccccCCCCeeEEEEECCCceEEEEeCCccccC
Confidence 6899999999 99999988644
No 24
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.25 E-value=3.5e-12 Score=118.20 Aligned_cols=113 Identities=21% Similarity=0.147 Sum_probs=88.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (417)
.|++||||+.| ++++..++. ++.+..++|++| |+|||.|+.+|||.+.|. ..++||++++-. +....++
T Consensus 46 ~iils~GPg~p---~~~~~~~~~-~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v~-----~~~~~l~ 115 (187)
T PRK08007 46 KIVISPGPCTP---DEAGISLDV-IRHYAGRLPILGVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPIT-----HNGEGVF 115 (187)
T ss_pred EEEEcCCCCCh---HHCCccHHH-HHHhcCCCCEEEECHHHHHHHHHcCCEEEeC-CCcccCCceEEE-----ECCCCcc
Confidence 49999999999 777766666 787888999999 999999999999999998 778899876321 1111111
Q ss_pred -------------------hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCccCcHHHHHHH
Q 014848 178 -------------------RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMRLVGALRE 221 (417)
Q Consensus 178 -------------------~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~l~~iIkk 221 (417)
..+|+.+.++| +++|.|||++|+. |+||+|++.....=..+++.
T Consensus 116 ~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~n 183 (187)
T PRK08007 116 RGLANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLAN 183 (187)
T ss_pred cCCCCCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEEEEEeCCcccCCcchHHHHHH
Confidence 26899999998 9999999999887 99999987444333345544
No 25
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.05 E-value=1.1e-10 Score=109.13 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=81.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH---HHHHhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER---RAMNTFWP 174 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~---~~~~~~~~ 174 (417)
.|+++|||..| .+.....+. ++.+.+++|.+| |+|||.|+.++||.+.|. ..++||.|++-.. ..+..+..
T Consensus 46 ~iIlsgGP~~p---~~~~~~~~~-i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~-~~~~~G~~~~i~~~~~~lf~~~~~ 120 (195)
T PRK07649 46 FLMISPGPCSP---NEAGISMEV-IRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA-ERLMHGKTSLMHHDGKTIFSDIPN 120 (195)
T ss_pred EEEECCCCCCh---HhCCCchHH-HHHhcCCCCEEEEcHHHHHHHHHcCCEEeeC-CCcccCCeEEEEECCChhhcCCCC
Confidence 49999999999 666555555 677778999999 999999999999999998 6688999863211 11111111
Q ss_pred --------hhh---hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCC
Q 014848 175 --------LLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (417)
Q Consensus 175 --------~l~---~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~ 210 (417)
.+. ..||+.+.+++ +.+|.+||++|+. |+||+|++.
T Consensus 121 ~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~~ 172 (195)
T PRK07649 121 PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIEGVQFHPESI 172 (195)
T ss_pred CCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEEEEEECCCCC
Confidence 000 25899899887 8899999999985 999999864
No 26
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.4e-10 Score=118.41 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=85.5
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (417)
.|++||||++|...++.+||++. +.+|+ ++|++| |+|+|++|++.||.++-+ .-|-||+.| -|.+.+--+|
T Consensus 67 aIVVgPGPG~P~~a~d~gI~~rl-~~~~~-~iPilGICLGfQal~l~hGA~v~~~-n~p~HGrvs-----~i~~~~~~~f 138 (767)
T KOG1224|consen 67 AIVVGPGPGSPMCAADIGICLRL-LLECR-DIPILGICLGFQALGLVHGAHVVHA-NEPVHGRVS-----GIEHDGNILF 138 (767)
T ss_pred eEEecCCCCCCCcHHHHHHHHHH-HHhcC-CCceeeeehhhHhHhhhcccceecC-CCcccceee-----eEEecCcEEE
Confidence 59999999999999999999999 99999 999999 999999999999999999 669999999 7777776666
Q ss_pred hhC---------------------CCceEEE---e-CCCC-ccccCCCCC----CCccCCCCC
Q 014848 178 RAL---------------------PPDVIFI---A-DPEG-SIMGGGGSI----GPHYSGNDP 210 (417)
Q Consensus 178 ~~L---------------------p~~~~f~---a-~~~G-~iMg~~~~~----G~qf~~~~~ 210 (417)
+-+ |-+..-+ . |..| -+|++.|+. |+||+|++-
T Consensus 139 ~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~ 201 (767)
T KOG1224|consen 139 SGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESI 201 (767)
T ss_pred ccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHh
Confidence 333 3333322 2 3333 579999998 999988664
No 27
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=98.89 E-value=1e-09 Score=101.82 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=84.6
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH---HHhh-hh
Q 014848 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA---MNTF-WP 174 (417)
Q Consensus 100 v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~---~~~~-~~ 174 (417)
|+++|||+.| +++....+. ++++..++|++| |+|||.++.+|||.+.+. .-++|++|++-..+. +.-+ .+
T Consensus 47 iilsgGpg~p---~~~~~~~~~-i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~-~~~~~g~~~~v~~~~~~~~~~l~~~ 121 (188)
T TIGR00566 47 IVISPGPCTP---NEAGISLEA-IRHFAGKLPILGVCLGHQAMGQAFGGDVVRA-NTVMHGKTSEIEHNGAGIFRGLFNP 121 (188)
T ss_pred EEEcCCCCCh---hhcchhHHH-HHHhccCCCEEEECHHHHHHHHHcCCEEeeC-CCccccceEEEEECCCccccCCCCC
Confidence 9999999999 555555555 888888999999 999999999999999997 567799885322110 0000 11
Q ss_pred h--------hh--hhCCCceEEEe-CCC-CccccCCCCC----CCccCCCCCccCcHHHHHHH
Q 014848 175 L--------LM--RALPPDVIFIA-DPE-GSIMGGGGSI----GPHYSGNDPREMRLVGALRE 221 (417)
Q Consensus 175 ~--------l~--~~Lp~~~~f~a-~~~-G~iMg~~~~~----G~qf~~~~~~~m~l~~iIkk 221 (417)
. .+ ..+|+.+.++| +.+ |.|||++|+. |+||+|++.....=..+++.
T Consensus 122 ~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~n 184 (188)
T TIGR00566 122 LTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLAN 184 (188)
T ss_pred cEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHH
Confidence 0 01 37888899887 655 6999999987 99999987544333334443
No 28
>CHL00101 trpG anthranilate synthase component 2
Probab=98.81 E-value=4.6e-09 Score=97.46 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=84.8
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTFW 173 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~~ 173 (417)
..|+++|+|..| ++... ...|++.+..++|.+| |+|+|.|..+|||.+.|. +.++|+.|+.-... .+..+.
T Consensus 45 dgiiisgGpg~~---~~~~~-~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~~~~~~~~l~~~~~ 119 (190)
T CHL00101 45 RHIIISPGPGHP---RDSGI-SLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKA-PKPMHGKTSKIYHNHDDLFQGLP 119 (190)
T ss_pred CEEEECCCCCCh---HHCcc-hHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEEC-CCcccCceeeEeeCCcHhhccCC
Confidence 469999999999 55443 3445777788999999 999999999999999988 67789988743211 111111
Q ss_pred hhh---------h--hhCCCceEEEe-CCCCccccCCCCC-----CCccCCCCCccCcHHHHHHH
Q 014848 174 PLL---------M--RALPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDPREMRLVGALRE 221 (417)
Q Consensus 174 ~~l---------~--~~Lp~~~~f~a-~~~G~iMg~~~~~-----G~qf~~~~~~~m~l~~iIkk 221 (417)
..+ + ..||+.+.++| +++|.+||++|+. |+||+|+......=..+++.
T Consensus 120 ~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~n 184 (190)
T CHL00101 120 NPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRN 184 (190)
T ss_pred CceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHH
Confidence 100 0 15899988888 8899999999865 89999987533333334443
No 29
>PLN02335 anthranilate synthase
Probab=98.81 E-value=4e-09 Score=100.68 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=81.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH------HHHH
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER------RAMN 170 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~------~~~~ 170 (417)
..|+++|||+.| .+.++.++. ++.....+|.+| |+|+|.|+.++||.+.|...-+.||.|.+-+. ..+.
T Consensus 64 d~iVisgGPg~p---~d~~~~~~~-~~~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~ 139 (222)
T PLN02335 64 RGVLISPGPGTP---QDSGISLQT-VLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFS 139 (222)
T ss_pred CEEEEcCCCCCh---hhccchHHH-HHHhCCCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhh
Confidence 369999999999 666677777 677777899999 99999999999999999833357888874321 1221
Q ss_pred hhhhhh----------h-hhCCCc-eEEEe-CCCCccccCCCCC-----CCccCCCCC
Q 014848 171 TFWPLL----------M-RALPPD-VIFIA-DPEGSIMGGGGSI-----GPHYSGNDP 210 (417)
Q Consensus 171 ~~~~~l----------~-~~Lp~~-~~f~a-~~~G~iMg~~~~~-----G~qf~~~~~ 210 (417)
.+...+ . ..+|+. +.+++ +.+|.||+++|+. |+||+|+..
T Consensus 140 ~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~ 197 (222)
T PLN02335 140 GLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESI 197 (222)
T ss_pred CCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCC
Confidence 111000 0 256766 78887 8999999999874 999999765
No 30
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=98.74 E-value=7.3e-09 Score=95.80 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=81.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhh--
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTF-- 172 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~~~~~-- 172 (417)
.|++||||..| .+.+..++. ++.+..++|++| |+|+|.|..+|||.+.+. ..++||.++... ...++.+
T Consensus 46 ~iilsgGP~~~---~~~~~~~~~-i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~-~~~~~G~~~~~~~~~~~lf~~l~~ 120 (191)
T PRK06774 46 HLVISPGPCTP---NEAGISLAV-IRHFADKLPILGVCLGHQALGQAFGARVVRA-RQVMHGKTSAICHSGQGVFRGLNQ 120 (191)
T ss_pred eEEEcCCCCCh---HhCCCchHH-HHHhcCCCCEEEECHHHHHHHHHhCCEEEeC-CcceecceEEEEecCchhhcCCCC
Confidence 49999999999 556666665 788888999999 999999999999999998 446677544110 0111111
Q ss_pred ------hhhh-h--hhCCCceEEEe-CC-C---CccccCCCCC----CCccCCCCCccCcHHHHHHHH
Q 014848 173 ------WPLL-M--RALPPDVIFIA-DP-E---GSIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (417)
Q Consensus 173 ------~~~l-~--~~Lp~~~~f~a-~~-~---G~iMg~~~~~----G~qf~~~~~~~m~l~~iIkkl 222 (417)
|=.+ + ..||+.+.++| ++ + ..||+++|+. |+||+|+......=..+++..
T Consensus 121 ~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf 188 (191)
T PRK06774 121 PLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNF 188 (191)
T ss_pred CcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHH
Confidence 0000 0 35788888887 44 3 2589999985 999999874443334455543
No 31
>PRK05670 anthranilate synthase component II; Provisional
Probab=98.71 E-value=1.3e-08 Score=93.91 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=85.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTFWP 174 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~~~~~~~ 174 (417)
.|++++||+.| .++....+. |+.+..++|.+| |+|||.|...+||.+.+. +.+.|+.+++-. ...+..+..
T Consensus 46 glIlsgGpg~~---~d~~~~~~~-l~~~~~~~PvLGIClG~Qlla~alGg~v~~~-~~~~~g~~~~v~~~~~~l~~~~~~ 120 (189)
T PRK05670 46 AIVLSPGPGTP---AEAGISLEL-IREFAGKVPILGVCLGHQAIGEAFGGKVVRA-KEIMHGKTSPIEHDGSGIFAGLPN 120 (189)
T ss_pred EEEEcCCCCCh---HHcchHHHH-HHHhcCCCCEEEECHHHHHHHHHhCCEEEec-CCcccCceeEEEeCCCchhccCCC
Confidence 49999999999 667666664 788888899999 999999999999999987 557787665321 111111111
Q ss_pred h---------hhh--hCCCceEEEe-CCCCccccCCCCC----CCccCCCCCccCcHHHHHHHH
Q 014848 175 L---------LMR--ALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (417)
Q Consensus 175 ~---------l~~--~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~l~~iIkkl 222 (417)
. .+. .||+.+.+++ +++|.++|++|+. |+||+|+.....+-..+++..
T Consensus 121 ~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F 184 (189)
T PRK05670 121 PFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENF 184 (189)
T ss_pred CcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHH
Confidence 0 112 3898988887 7899999999864 999999875444434455443
No 32
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=98.70 E-value=1.2e-08 Score=94.81 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=83.0
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTFW 173 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~~ 173 (417)
..|+++|||..| .+.....+. ++.+...+|.+| |+|||.|+.++||.+.+. ..++||.+..-..+ .+..+.
T Consensus 45 ~~iilsgGp~~~---~~~~~~~~~-i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~-~~~~~G~~~~~~~~~~~l~~~~~ 119 (193)
T PRK08857 45 THLVISPGPCTP---NEAGISLQA-IEHFAGKLPILGVCLGHQAIAQVFGGQVVRA-RQVMHGKTSPIRHTGRSVFKGLN 119 (193)
T ss_pred CEEEEeCCCCCh---HHCcchHHH-HHHhcCCCCEEEEcHHHHHHHHHhCCEEEeC-CCceeCceEEEEECCCcccccCC
Confidence 359999999999 555555555 677888999999 999999999999999998 66777764311100 111110
Q ss_pred h--------hh---hhhCCCceEEEe-CC--CC---ccccCCCCC----CCccCCCCCccCcHHHHHHHH
Q 014848 174 P--------LL---MRALPPDVIFIA-DP--EG---SIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (417)
Q Consensus 174 ~--------~l---~~~Lp~~~~f~a-~~--~G---~iMg~~~~~----G~qf~~~~~~~m~l~~iIkkl 222 (417)
. .+ ...||+.+.++| ++ || .|||++|++ |+||+|++.....=..+++..
T Consensus 120 ~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nF 189 (193)
T PRK08857 120 NPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANF 189 (193)
T ss_pred CccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHH
Confidence 0 00 026899999997 44 43 499999887 999999877444444555543
No 33
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=98.69 E-value=7.2e-09 Score=107.62 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=84.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH--------HHH
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER--------RAM 169 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~--------~~~ 169 (417)
.|++++||+.| +++....+. ++++.+++|++| |+|||.|+.++||.+.+. +|..||...+-.. +..
T Consensus 284 GIiLSnGPGDP---~~~~~~ie~-ik~l~~~iPIlGICLGhQlLa~AlGGkv~K~-~~Gh~G~n~pV~~~~~~~v~itsq 358 (415)
T PLN02771 284 GVLFSNGPGDP---SAVPYAVET-VKELLGKVPVFGICMGHQLLGQALGGKTFKM-KFGHHGGNHPVRNNRTGRVEISAQ 358 (415)
T ss_pred EEEEcCCCCCh---hHhhHHHHH-HHHHHhCCCEEEEcHHHHHHHHhcCCeEEEC-CCCcccceEEEEECCCCCEEEEec
Confidence 59999999999 788777777 788778999999 999999999999999998 9998888753110 001
Q ss_pred HhhhhhhhhhCCCceEEEe--CCCCccccCCCCC----CCccCCCCCc
Q 014848 170 NTFWPLLMRALPPDVIFIA--DPEGSIMGGGGSI----GPHYSGNDPR 211 (417)
Q Consensus 170 ~~~~~~l~~~Lp~~~~f~a--~~~G~iMg~~~~~----G~qf~~~~~~ 211 (417)
.|=.-.-...||.++.+++ ..||.+||++|+. |+||+|+..+
T Consensus 359 nHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa~p 406 (415)
T PLN02771 359 NHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEASP 406 (415)
T ss_pred CHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCCCC
Confidence 1111001157899898886 4699999999998 9999997654
No 34
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.68 E-value=1.3e-08 Score=94.28 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=85.2
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~----~~~~~ 172 (417)
-.|+++|||..| +......+. |+.+...+|.+| |+|+|.|...+||.+.|. ..++|+.|++-+.. .++.+
T Consensus 45 d~iIi~gGp~~~---~~~~~~~~~-i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~v~~~~~~~l~~~~ 119 (190)
T PRK06895 45 SHILISPGPDVP---RAYPQLFAM-LERYHQHKSILGVCLGHQTLCEFFGGELYNL-NNVRHGQQRPLKVRSNSPLFDGL 119 (190)
T ss_pred CEEEECCCCCCh---HHhhHHHHH-HHHhcCCCCEEEEcHHHHHHHHHhCCeEeec-CCCccCceEEEEECCCChhhhcC
Confidence 368889999977 555555555 788888999999 999999999999999987 44789998743211 22211
Q ss_pred hhh--------hh---hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCccCcHHHHHHHH
Q 014848 173 WPL--------LM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (417)
Q Consensus 173 ~~~--------l~---~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~l~~iIkkl 222 (417)
... .. ..||+.+..++ +.++.+|+++|+. |+||+|+......=..+|+..
T Consensus 120 ~~~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf 185 (190)
T PRK06895 120 PEEFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNW 185 (190)
T ss_pred CCceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHH
Confidence 111 00 14788888887 8899999999986 999999863332323355543
No 35
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=98.49 E-value=5.6e-08 Score=107.11 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=81.0
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~~~~~~ 172 (417)
-.|+++|||+.| +++ ...+.|-+....++|.+| |+|+|.|+.+|||.+.+. +.|.||+|++-+. ..++.+
T Consensus 561 DgLILsgGPGsp---~d~-~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~~~~~Lf~~l 635 (717)
T TIGR01815 561 DLVVLSPGPGRP---ADF-DVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVLGPDALFAGL 635 (717)
T ss_pred CEEEEcCCCCCc---hhc-ccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEECCCChhhhcC
Confidence 369999999999 443 345664444567899999 999999999999999998 8899999874321 122221
Q ss_pred --------hhhhh---hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCC
Q 014848 173 --------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (417)
Q Consensus 173 --------~~~l~---~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~ 210 (417)
|=.+. ..||+++.+++ +++|.+|+++|+. |+||||++-
T Consensus 636 p~~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi 689 (717)
T TIGR01815 636 PERLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESI 689 (717)
T ss_pred CCCCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEEEEEeCCeeC
Confidence 11111 36889999987 8899999999866 999999874
No 36
>PRK05637 anthranilate synthase component II; Provisional
Probab=98.47 E-value=8.9e-08 Score=90.80 Aligned_cols=118 Identities=10% Similarity=0.062 Sum_probs=80.4
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-------HHH
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-------AMN 170 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~-------~~~ 170 (417)
.|+++|||+.| .+++...+. ++++.+++|++| |+|||.|..++|+.+.+. . ++||.|+.-+.+ .+.
T Consensus 47 ~iIlsgGPg~~---~d~~~~~~l-i~~~~~~~PiLGIClG~Qlla~alGG~V~~~-~-~~~G~~~~i~~~~~~~~~~l~~ 120 (208)
T PRK05637 47 LICLSPGPGHP---RDAGNMMAL-IDRTLGQIPLLGICLGFQALLEHHGGKVEPC-G-PVHGTTDNMILTDAGVQSPVFA 120 (208)
T ss_pred EEEEeCCCCCH---HHhhHHHHH-HHHHhCCCCEEEEcHHHHHHHHHcCCeeccC-C-cccceEEEeEECCCCCCCcccC
Confidence 69999999999 777665555 677777899999 999999999999999876 3 567766422111 111
Q ss_pred hh------------hhh---------hhhhCCCceEEEe-CCC---CccccCCCCC----CCccCCCCCccCc----HHH
Q 014848 171 TF------------WPL---------LMRALPPDVIFIA-DPE---GSIMGGGGSI----GPHYSGNDPREMR----LVG 217 (417)
Q Consensus 171 ~~------------~~~---------l~~~Lp~~~~f~a-~~~---G~iMg~~~~~----G~qf~~~~~~~m~----l~~ 217 (417)
.. |.. -+..+|+.+.++| +++ +.+|++.+.. |+||+|++.-... ++.
T Consensus 121 ~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~n 200 (208)
T PRK05637 121 GLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSR 200 (208)
T ss_pred CCCcccccccccccCCceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHH
Confidence 10 000 1256899999998 333 3689977554 9999997654433 444
Q ss_pred HHHHH
Q 014848 218 ALREV 222 (417)
Q Consensus 218 iIkkl 222 (417)
+++.+
T Consensus 201 fl~~~ 205 (208)
T PRK05637 201 CVEQL 205 (208)
T ss_pred HHHHH
Confidence 44443
No 37
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=98.40 E-value=1.6e-07 Score=103.95 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=75.4
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLL 176 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l 176 (417)
.|++||||++|-.+++.+++-+. ++.. ..++|++| |+|||.|+.+|||.+.+. +.|+||.+++- .+....+
T Consensus 56 ~VVIspGPG~p~~~~~~~i~~~i-~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~-~~~~hG~~~~v-----~~~~~~l 128 (742)
T TIGR01823 56 AIVVGPGPGNPNNAQDMGIISEL-WELANLDEVPVLGICLGFQSLCLAQGADISRL-PTPKHGQVYEM-----HTNDAAI 128 (742)
T ss_pred EEEECCCCCCccchhhhHHHHHH-HHhcccCCCcEEEEchhhHHHHhhcCCEEEEC-CCCCcCeEEEE-----EECCccc
Confidence 59999999999766665554444 5543 34799999 999999999999999988 78999986522 1111111
Q ss_pred h-----------------hhCCCc--eEEEe-CC-CCccccCCCCC----CCccCCCCCcc
Q 014848 177 M-----------------RALPPD--VIFIA-DP-EGSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 177 ~-----------------~~Lp~~--~~f~a-~~-~G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
+ ...|++ +.+++ +. ++.|||+.|+. |+||+|++...
T Consensus 129 f~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s 189 (742)
T TIGR01823 129 FCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCS 189 (742)
T ss_pred cCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCC
Confidence 1 123444 33444 44 45799999998 99999987443
No 38
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=98.40 E-value=2.7e-07 Score=87.65 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=78.7
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHH
Q 014848 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRA 168 (417)
Q Consensus 94 ~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e---~~~ 168 (417)
++.=..|++++||..| +++...++. ++++. .++|++| |.|||.|..+|||.+.+. ..++++..+.-. ...
T Consensus 44 ~~~~dgliisGGp~~~---~~~~~~~~~-i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~-~~~~~g~~~~v~~~~~~~ 118 (214)
T PRK07765 44 AAQFDGVLLSPGPGTP---ERAGASIDM-VRACAAAGTPLLGVCLGHQAIGVAFGATVDRA-PELLHGKTSSVHHTGVGV 118 (214)
T ss_pred hcCCCEEEECCCCCCh---hhcchHHHH-HHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC-CCCccCceeEEEECCCcc
Confidence 3444569999999877 666655555 67765 4799999 999999999999999987 555565532110 001
Q ss_pred HHh--------hhhh-hh--hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCC
Q 014848 169 MNT--------FWPL-LM--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (417)
Q Consensus 169 ~~~--------~~~~-l~--~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~ 210 (417)
+.. .|=. -+ ..||+.+.+++ +++|.++|++++. |+||+|+..
T Consensus 119 ~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~ 176 (214)
T PRK07765 119 LAGLPDPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESV 176 (214)
T ss_pred ccCCCCccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcc
Confidence 110 0100 11 36899999998 8999999999885 999999864
No 39
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.40 E-value=2.7e-07 Score=94.35 Aligned_cols=108 Identities=11% Similarity=0.009 Sum_probs=77.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-----HHHh-
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-----AMNT- 171 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~-----~~~~- 171 (417)
.|++++||+.| .+....++. ++++...+|.+| |+|||.|+.+|||.+.+. +|+.|+.+.+-... .+..
T Consensus 211 GIiLsgGPgdp---~~~~~~~~~-i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl-~~gh~G~~hpV~~~~~~~~~~ts~ 285 (354)
T PRK12838 211 GIVLSNGPGDP---KELQPYLPE-IKKLISSYPILGICLGHQLIALALGADTEKL-PFGHRGANHPVIDLTTGRVWMTSQ 285 (354)
T ss_pred EEEEcCCCCCh---HHhHHHHHH-HHHHhcCCCEEEECHHHHHHHHHhCCEEecC-CCCccCCceEEEECCCCeEEEecc
Confidence 58999999988 666667777 677766699999 999999999999999987 88877776532110 0000
Q ss_pred hhhhhh--hhCCCc-eEEEe--CCCCccccCCCCC----CCccCCCCCc
Q 014848 172 FWPLLM--RALPPD-VIFIA--DPEGSIMGGGGSI----GPHYSGNDPR 211 (417)
Q Consensus 172 ~~~~l~--~~Lp~~-~~f~a--~~~G~iMg~~~~~----G~qf~~~~~~ 211 (417)
+=-.-+ ..+|.. +.+++ ..||.|||++|+. |+||+|+..+
T Consensus 286 ~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~ 334 (354)
T PRK12838 286 NHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHP 334 (354)
T ss_pred chheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCC
Confidence 000001 236543 56654 5799999999988 9999998754
No 40
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=98.38 E-value=4.1e-07 Score=93.11 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=79.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-----HHHH--
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-----RRAM-- 169 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e-----~~~~-- 169 (417)
-.|++++||+.| ++....++. ++.+...+|++| |+|||.|+.+|||.+.+. +|..|+...+-. +-.+
T Consensus 216 DGIiLSgGPgdp---~~~~~~i~~-i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl-~~gh~G~nhpV~~~~~~~v~its 290 (358)
T TIGR01368 216 DGIFLSNGPGDP---AAVEPAIET-IRKLLEKIPIFGICLGHQLLALAFGAKTYKM-KFGHRGGNHPVKDLITGRVEITS 290 (358)
T ss_pred CEEEECCCCCCH---HHHHHHHHH-HHHHHcCCCEEEECHHHHHHHHHhCCceecc-CcCcCCCceeeEECCCCcEEEee
Confidence 469999999988 665666777 788877999999 999999999999999997 777666433110 0000
Q ss_pred -HhhhhhhhhhCC-CceEEEe-C-CCCccccCCCCC----CCccCCCCCcc
Q 014848 170 -NTFWPLLMRALP-PDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 170 -~~~~~~l~~~Lp-~~~~f~a-~-~~G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
.|-+-.-.+.|| ..+.+++ + .||.|||++|+. |+||+|+..+.
T Consensus 291 qnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~~g 341 (358)
T TIGR01368 291 QNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPG 341 (358)
T ss_pred cCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCCCC
Confidence 011100003567 5688886 3 699999999998 99999976543
No 41
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.34 E-value=4e-07 Score=83.50 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=77.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcc-CCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhh--
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGD-LKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFW-- 173 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~-l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~-- 173 (417)
..|++++|+..| ++....++. ++++... +|.+| |+|+|.++.+||+.+.+. .++.++.+.+-........+
T Consensus 41 dgiil~GG~~~~---~~~~~~~~~-~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~-~~~~~g~~~~v~~~~~~~~~~v 115 (178)
T cd01744 41 DGIFLSNGPGDP---ALLDEAIKT-VRKLLGKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGSNHPVKDLITGRVYIT 115 (178)
T ss_pred CEEEECCCCCCh---hHhHHHHHH-HHHHHhCCCCEEEECHHHHHHHHHcCCceecC-CCCCCCCceeeEEcCCCCcEEE
Confidence 358899998877 555556666 7776554 99999 999999999999999986 66667665421100000001
Q ss_pred ---hh-hh--hhCCCceEEEe-C-CCCccccCCCCC----CCccCCCCCc
Q 014848 174 ---PL-LM--RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDPR 211 (417)
Q Consensus 174 ---~~-l~--~~Lp~~~~f~a-~-~~G~iMg~~~~~----G~qf~~~~~~ 211 (417)
=. -+ +.||+.+.+++ + .+|.||++.|+. |+||+|+...
T Consensus 116 ~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~~~ 165 (178)
T cd01744 116 SQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEASP 165 (178)
T ss_pred EcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeCCCCCC
Confidence 00 01 36999999998 4 589999999976 9999997644
No 42
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.29 E-value=6.6e-07 Score=91.67 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=77.7
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-----HHHHHh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-----RRAMNT 171 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e-----~~~~~~ 171 (417)
.|++++||+.| ++....++. ++++. ..+|.+| |+|||.|+.+|||.+.+. +|..|+...+-. +..+..
T Consensus 221 GIvLSgGPgdp---~~~~~~~~~-i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl-~~gh~G~~~pv~~~~~~~~~its 295 (360)
T PRK12564 221 GVFLSNGPGDP---AALDYAIEM-IRELLEKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDLETGKVEITS 295 (360)
T ss_pred EEEEeCCCCCh---HHHHHHHHH-HHHHHHcCCeEEEECHHHHHHHHHhCCcEecc-CCCccCCceeeEECCCCcEEEEe
Confidence 48999999988 655556666 77776 4799999 999999999999999997 777666432110 000000
Q ss_pred hhhhh-h--hhCCCceEEEe-C-CCCccccCCCCC----CCccCCCCCc
Q 014848 172 FWPLL-M--RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDPR 211 (417)
Q Consensus 172 ~~~~l-~--~~Lp~~~~f~a-~-~~G~iMg~~~~~----G~qf~~~~~~ 211 (417)
-+=.+ + +.||+.+.+++ + .||.|||+.|+. |+||+|+..+
T Consensus 296 ~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~~ 344 (360)
T PRK12564 296 QNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASP 344 (360)
T ss_pred cCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCC
Confidence 00011 1 37898888886 4 599999999987 9999997654
No 43
>PRK13566 anthranilate synthase; Provisional
Probab=98.28 E-value=4.1e-07 Score=100.49 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=80.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~----~~~~~ 172 (417)
.|+++|||+.| .+ +.+.+. ++.+ ...+|++| |+|+|.|..+||+.+.+. ..|.|+.|++-..+ .+..+
T Consensus 572 gVVLsgGpgsp---~d-~~~~~l-I~~a~~~~iPILGIClG~QlLa~alGG~V~~~-~~~~~G~~~~V~v~~~~~Lf~~l 645 (720)
T PRK13566 572 LVVLSPGPGRP---SD-FDCKAT-IDAALARNLPIFGVCLGLQAIVEAFGGELGQL-AYPMHGKPSRIRVRGPGRLFSGL 645 (720)
T ss_pred EEEECCCCCCh---hh-CCcHHH-HHHHHHCCCcEEEEehhHHHHHHHcCCEEEEC-CCCccCCceEEEECCCCchhhcC
Confidence 48999999999 44 234555 5555 45799999 999999999999999987 77899988633221 22211
Q ss_pred --------hhhh-h--hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCcc
Q 014848 173 --------WPLL-M--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 173 --------~~~l-~--~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
|-.+ + ..||+.+.++| +++|.||++.|+. |+||+|++...
T Consensus 646 p~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t 701 (720)
T PRK13566 646 PEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMT 701 (720)
T ss_pred CCCCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCc
Confidence 1111 1 34899999998 9999999999985 99999987543
No 44
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=98.23 E-value=1e-06 Score=90.93 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=73.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH------HHHHHHH
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE------GERRAMN 170 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~------~e~~~~~ 170 (417)
.|++++||+.| .+....++. ++.+ ...+|++| |+|||.|+.+|||.+.+. +|..++...+ .+.+.-.
T Consensus 236 gIilSgGPg~p---~~~~~~i~~-i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~-~~Gh~g~n~pv~~~~~v~itsq~ 310 (382)
T CHL00197 236 GILLSNGPGDP---SAIHYGIKT-VKKLLKYNIPIFGICMGHQILSLALEAKTFKL-KFGHRGLNHPSGLNQQVEITSQN 310 (382)
T ss_pred EEEEcCCCCCh---hHHHHHHHH-HHHHHhCCCCEEEEcHHHHHHHHHhCCEEecc-CCCCCCCCEecCCCCceEEeecc
Confidence 59999999999 666667777 4555 46899999 999999999999999987 5554442110 0000011
Q ss_pred hhhhhhhhhCCC-ceEEE--eCCCCccccCCCCC----CCccCCCCCc
Q 014848 171 TFWPLLMRALPP-DVIFI--ADPEGSIMGGGGSI----GPHYSGNDPR 211 (417)
Q Consensus 171 ~~~~~l~~~Lp~-~~~f~--a~~~G~iMg~~~~~----G~qf~~~~~~ 211 (417)
|-+-.-.+.+|. .+.++ +..||.|||++|+. |+||+|+..+
T Consensus 311 H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~~ 358 (382)
T CHL00197 311 HGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEASP 358 (382)
T ss_pred hheEeeccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCCC
Confidence 111100145553 45555 44699999999998 9999997654
No 45
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=98.23 E-value=1.3e-06 Score=80.15 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=78.0
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTFWP 174 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~---~~~~~~~ 174 (417)
.|+++|++..|.+.+ .+..|++.+..++|.+| |+|+|.|..++||.+.+. ..+.++.|.+-.-. .+..+..
T Consensus 45 gvil~gG~~~~~~~~----~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~-~~~~~g~~~~v~~~~~~~~~~~~~ 119 (184)
T cd01743 45 AIVISPGPGHPEDAG----ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRA-PEPMHGKTSEIHHDGSGLFKGLPQ 119 (184)
T ss_pred EEEECCCCCCcccch----hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeC-CCCCcCceeEEEECCCccccCCCC
Confidence 389999999985543 35555666777899999 999999999999999987 56667766522111 0000000
Q ss_pred hh---------hhhCCCc--eEEEe-CCCCccccCCCCC----CCccCCCCCccCcHHHHHH
Q 014848 175 LL---------MRALPPD--VIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMRLVGALR 220 (417)
Q Consensus 175 ~l---------~~~Lp~~--~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~l~~iIk 220 (417)
.. +..+|.. +..++ ++++.+++++++. |+||+|+......-.++++
T Consensus 120 ~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~ 181 (184)
T cd01743 120 PFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLE 181 (184)
T ss_pred CcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEEEEeeCCCcCCCcchHHHHH
Confidence 00 0234544 66666 8899999999877 9999997644332333444
No 46
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.99 E-value=9e-07 Score=80.82 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=85.1
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhhc-cCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----H
Q 014848 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----R 167 (417)
Q Consensus 94 ~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~ 167 (417)
++.-..|+++++++.|-+ ....++. +++++. ++|.+| |+|||.|.-.||+.+.+....+.++....... .
T Consensus 40 ~~~~d~iii~Gg~~~~~d---~~~~~~~-i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~ 115 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYD---IEGLIEL-IREARERKIPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDP 115 (192)
T ss_dssp TTTSSEEEEECESSSTTS---HHHHHHH-HHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHG
T ss_pred hcCCCEEEECCcCCcccc---ccccccc-cccccccceEEEEEeehhhhhHHhcCCcccccccccccccccccccccccc
Confidence 455567889999999943 5556666 888887 999999 99999999999999998844665553321000 0
Q ss_pred HHHhhhhhh---------hhh---CCCceEEEe-CCCC-ccccCCCCC----CCccCCCCCccCcHHHHHH
Q 014848 168 AMNTFWPLL---------MRA---LPPDVIFIA-DPEG-SIMGGGGSI----GPHYSGNDPREMRLVGALR 220 (417)
Q Consensus 168 ~~~~~~~~l---------~~~---Lp~~~~f~a-~~~G-~iMg~~~~~----G~qf~~~~~~~m~l~~iIk 220 (417)
.+......+ +.. +|+.+.+++ +.++ .+|+++|+. |+||+|+......=..+|+
T Consensus 116 ~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~ 186 (192)
T PF00117_consen 116 LFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLK 186 (192)
T ss_dssp GGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHHHHHH
T ss_pred cccccccccccccccceeeecccccccccccccccccccccccccccccEEEEEecCCcCCCCCCcchhhh
Confidence 111110110 034 899999998 6576 799999998 7999998777665333443
No 47
>PRK00758 GMP synthase subunit A; Validated
Probab=97.78 E-value=1.3e-05 Score=73.49 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=70.4
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e----~~~~~~~ 172 (417)
..|++++++. .+.+....+. |+. .++|++| |+|||.|..++|+.+.|. +.++++. .+-+ ...+..+
T Consensus 43 dgivi~Gg~~----~~~~~~~~~~-l~~--~~~PilGIC~G~Q~L~~a~Gg~v~~~-~~~~~g~-~~i~~~~~~~l~~~~ 113 (184)
T PRK00758 43 DGLILSGGPD----IERAGNCPEY-LKE--LDVPILGICLGHQLIAKAFGGEVGRG-EYGEYAL-VEVEILDEDDILKGL 113 (184)
T ss_pred CEEEECCCCC----hhhccccHHH-HHh--CCCCEEEEeHHHHHHHHhcCcEEecC-CCceeee-EEEEEcCCChhhhCC
Confidence 4577777773 2344444444 553 4799999 999999999999998876 5555543 2111 1122221
Q ss_pred hhh---------hhhhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCcc
Q 014848 173 WPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 173 ~~~---------l~~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
.+. -+..+|+.+.++| +++|.+++++++. |+||+|+....
T Consensus 114 ~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~~~~~g~QfHPE~~~~ 167 (184)
T PRK00758 114 PPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEVAHT 167 (184)
T ss_pred CCCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECCCCEEEEEcCCccCCC
Confidence 111 1246899988887 8899999998754 88999976543
No 48
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.72 E-value=1.8e-05 Score=76.52 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=75.1
Q ss_pred hhhccceeeCCCCCCCCChhhhhh-hHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCC-CCcCCHHHHH--
Q 014848 94 LEAQAKVCTGPTQTRPLREDEAFK-VLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPE-ATQWSEGERR-- 167 (417)
Q Consensus 94 ~~~~~~v~~gp~~~~Pl~~~~a~~-~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~-~~~~s~~e~~-- 167 (417)
++.-..|++++++..+-+++.--. .++. |+++ ..+.|.+| |+|||.|..++||.+.+. ..+. +.-|.+.+.+
T Consensus 50 l~~~dgvii~Ggp~~~~d~~~wi~~~~~~-i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~~ 127 (239)
T PRK06490 50 LEDHAGAVIFGGPMSANDPDDFIRREIDW-ISVPLKENKPFLGICLGAQMLARHLGARVAPH-PDGRVEIGYYPLRPTEA 127 (239)
T ss_pred ccccCEEEEECCCCCCCCCchHHHHHHHH-HHHHHHCCCCEEEECHhHHHHHHHcCCEeecC-CCCCCccceEEeEECCC
Confidence 344445777778888865543212 3444 6654 45799999 999999999999999987 2211 2222211111
Q ss_pred --HHHhh------hhhhhhhCCCceEEEe-CCCCccccCCCCC---CCccCCCCCcc
Q 014848 168 --AMNTF------WPLLMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPRE 212 (417)
Q Consensus 168 --~~~~~------~~~l~~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~~~~~ 212 (417)
.+..+ |=...-.||+....+| ++++.+|+++++. |+||+|+...+
T Consensus 128 ~~~~~~~~~~~~~~H~d~~~lP~~~~~LA~s~~~~~qa~~~~~~v~g~QfHPE~~~~ 184 (239)
T PRK06490 128 GRALMHWPEMVYHWHREGFDLPAGAELLATGDDFPNQAFRYGDNAWGLQFHPEVTRA 184 (239)
T ss_pred cccccCCCCEEEEECCccccCCCCCEEEEeCCCCCeEEEEeCCCEEEEeeCccCCHH
Confidence 11111 1111136899999998 8899999999875 99999976643
No 49
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.66 E-value=5.3e-05 Score=73.08 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=71.7
Q ss_pred ceeeCCCCCCCCChhhh-hhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH-------HH
Q 014848 99 KVCTGPTQTRPLREDEA-FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER-------RA 168 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a-~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~-------~~ 168 (417)
.|+++.++....++..= ....+. |+.+ ..++|++| |.|||.+..++||.+.+. ....+.-|.+.+. ..
T Consensus 57 gvvi~Gg~~~~~d~~~w~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~g~e~G~~~v~~~~~~~~~~l 134 (237)
T PRK09065 57 GVIITGSWAMVTDRLDWSERTADW-LRQAAAAGMPLLGICYGHQLLAHALGGEVGYN-PAGRESGTVTVELHPAAADDPL 134 (237)
T ss_pred EEEEeCCCcccCCCchhHHHHHHH-HHHHHHCCCCEEEEChhHHHHHHHcCCccccC-CCCCccceEEEEEccccccChh
Confidence 37777677654332111 123344 5554 35799999 999999999999999887 3323322332211 12
Q ss_pred HHhhhhh---------hhhhCCCceEEEe-CCCCccccCCCCC---CCccCCCCCcc
Q 014848 169 MNTFWPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPRE 212 (417)
Q Consensus 169 ~~~~~~~---------l~~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~~~~~ 212 (417)
+..+.+. -+..||+.+.++| ++++.++|++++. |+||+|+-..+
T Consensus 135 ~~~~~~~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~~~i~gvQfHPE~~~~ 191 (237)
T PRK09065 135 FAGLPAQFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYGPHAWGVQFHPEFTAH 191 (237)
T ss_pred hhcCCccCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeCCCEEEEEeCCcCCHH
Confidence 2222111 1257999999998 7779999999976 99999975544
No 50
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.66 E-value=0.00011 Score=68.14 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=65.5
Q ss_pred hhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhCCCceEEEe-CCCCc
Q 014848 117 KVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIA-DPEGS 193 (417)
Q Consensus 117 ~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~Lp~~~~f~a-~~~G~ 193 (417)
...+. ++++ ...+|++| |+|+|.|..+|||.+.|. + .-|+ +--.-+..+|+.+.+++ +++|.
T Consensus 88 ~~~~~-~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---~--~v~~---------~H~~~v~~~~~~~~vla~~~d~~ 152 (189)
T cd01745 88 FELAL-LRAALERGKPILGICRGMQLLNVALGGTLYQD---I--RVNS---------LHHQAIKRLADGLRVEARAPDGV 152 (189)
T ss_pred HHHHH-HHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC---C--ceec---------hHHHHHhhcCCCCEEEEECCCCc
Confidence 33445 6666 46799999 999999999999999887 2 1122 11223467899999998 78999
Q ss_pred cccCCCCC-----CCccCCCCCcc--CcHHHHHH
Q 014848 194 IMGGGGSI-----GPHYSGNDPRE--MRLVGALR 220 (417)
Q Consensus 194 iMg~~~~~-----G~qf~~~~~~~--m~l~~iIk 220 (417)
|++++++. |+||+|+.... ..-..+++
T Consensus 153 vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~ 186 (189)
T cd01745 153 IEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFE 186 (189)
T ss_pred EEEEEeCCCCeEEEEecCCCcCcccCchHhHHHH
Confidence 99999874 99999977665 44444444
No 51
>PLN02347 GMP synthetase
Probab=97.54 E-value=5.4e-05 Score=81.40 Aligned_cols=186 Identities=13% Similarity=0.046 Sum_probs=105.9
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFW 173 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~---~e~~~~~~~~ 173 (417)
.|++++||..+-.+ ++....+.|++.+ ...+|++| |+|||.|+.+|||.+.+. .-+++|.-+- ........+.
T Consensus 56 gIILsGGP~sv~~~-~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~-~~~e~G~~~v~i~~~~~Lf~~l~ 133 (536)
T PLN02347 56 VVILSGGPHSVHVE-GAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPG-EKQEYGRMEIRVVCGSQLFGDLP 133 (536)
T ss_pred EEEECCCCCccccc-CCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEec-CCcccceEEEEEcCCChhhhcCC
Confidence 58888898877432 2222334445444 24799999 999999999999999987 3455654430 0111221111
Q ss_pred hh-----------hhhhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCccCc----HHHHHHHHhcC-CCCC---
Q 014848 174 PL-----------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMR----LVGALREVLAG-GHLG--- 229 (417)
Q Consensus 174 ~~-----------l~~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~----l~~iIkkl~~G-~~LT--- 229 (417)
.. -+..||+.+.++| +.+|.||++.|+. |+||||+...... ++..+.++.+- .+.+
T Consensus 134 ~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~ 213 (536)
T PLN02347 134 SGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQD 213 (536)
T ss_pred CCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcch
Confidence 10 0136888888887 8899999998755 9999997764322 34444444432 2333
Q ss_pred --HHHHHHHHHHhcCCc-c-CCCCCCCCHHHHHHHHHHH---HhcC-------CCHHHHHHHHHHHHhhcC
Q 014848 230 --YEEVQGVLRDVLPLQ-V-DNKAPGVSESLLSAFLIGQ---RMNR-------ETDRELKAYCLAFDDELG 286 (417)
Q Consensus 230 --~eEA~~~m~~IL~~~-~-~~~~Gevsd~QigAFL~AL---R~KG-------ET~eELaGfa~Amr~~~~ 286 (417)
.+..+.+-+.+-..+ . -.-+|.++-+-+++++.-. ++.. ....|....++.+.+..+
T Consensus 214 ~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lg 284 (536)
T PLN02347 214 VLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLH 284 (536)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcC
Confidence 112222222211000 0 1238899887777765441 1221 134577666666665554
No 52
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.53 E-value=6.7e-05 Score=68.17 Aligned_cols=109 Identities=11% Similarity=0.002 Sum_probs=71.4
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFWP 174 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~---~e~~~~~~~~~ 174 (417)
.|+++.++..+.+++ +....+.+++ ...|.+| |+|+|.|..++|+.+.+. .-|+.|..+- .+...+..+..
T Consensus 44 gvIl~Gg~~~~~~~~-~~~~~~~~~~---~~~PilGIC~G~Qll~~~~gg~v~~~-~~~~~G~~~v~~~~~~~l~~~~~~ 118 (181)
T cd01742 44 GIILSGGPSSVYEED-APRVDPEIFE---LGVPVLGICYGMQLIAKALGGKVERG-DKREYGKAEIEIDDSSPLFEGLPD 118 (181)
T ss_pred EEEECCCcccccccc-cchhhHHHHh---cCCCEEEEcHHHHHHHHhcCCeEEeC-CCCcceEEEEEecCCChhhcCCCC
Confidence 377777877775443 2333444333 2899999 999999999999988876 4455542220 01111111111
Q ss_pred h---------hhhhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCcc
Q 014848 175 L---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 175 ~---------l~~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
. -+..+|+.+.+++ ++++.|++++++. |+||+|+....
T Consensus 119 ~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~QfHPE~~~~ 170 (181)
T cd01742 119 EQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTHT 170 (181)
T ss_pred ceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEcCCccccC
Confidence 1 1246899989887 7789999999875 99999977654
No 53
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.50 E-value=0.00024 Score=68.94 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=71.7
Q ss_pred hccceeeCCCCCCCCCh--hh-hh-h-hHH---HHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH
Q 014848 96 AQAKVCTGPTQTRPLRE--DE-AF-K-VLD---TILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE 165 (417)
Q Consensus 96 ~~~~v~~gp~~~~Pl~~--~~-a~-~-~~~---~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e 165 (417)
.=..|+++.++..+-+. ++ -. . +.+ ..++.+ ..++|++| |.|||.|...|||.+.+. ...+--|.+.+
T Consensus 51 ~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~--~g~e~G~~~v~ 128 (242)
T PRK07567 51 DYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRT--YGEPVGAVTVS 128 (242)
T ss_pred hccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecC--CCCcCccEEEE
Confidence 33467888888777554 11 11 0 111 112222 46799999 999999999999999884 22222122211
Q ss_pred H-------HHHHhhhhh---------hhhhCCCceEEEe-CCCCccccCCCCC---CCccCCCCCccC
Q 014848 166 R-------RAMNTFWPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREM 213 (417)
Q Consensus 166 ~-------~~~~~~~~~---------l~~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~~~~~m 213 (417)
. ..+..+... -+..||+.+.++| ++++.+++++++. |+||+++-..++
T Consensus 129 l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~~~~~gvQfHPE~~~~~ 196 (242)
T PRK07567 129 LTDAGRADPLLAGLPDTFTAFVGHKEAVSALPPGAVLLATSPTCPVQMFRVGENVYATQFHPELDADG 196 (242)
T ss_pred ECCccCCChhhcCCCCceEEEeehhhhhhhCCCCCEEEEeCCCCCEEEEEeCCCEEEEEeCCcCCHHH
Confidence 1 122222111 1247999999998 7788899999764 999998765554
No 54
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=97.27 E-value=0.0002 Score=69.95 Aligned_cols=90 Identities=12% Similarity=0.022 Sum_probs=60.3
Q ss_pred HHHHh-hccCCccc-cccHHHHhHHHHhhhhccc----cCCCCCcCCHH---------------HHHHHHh-h-h-----
Q 014848 122 ILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRAN----AFPEATQWSEG---------------ERRAMNT-F-W----- 173 (417)
Q Consensus 122 ~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~----~~p~~~~~s~~---------------e~~~~~~-~-~----- 173 (417)
+|+.+ ..++|++| |.|+|.|..+||+.+.+.- ....|++..+. +...+.. + +
T Consensus 99 li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~~~~~ 178 (254)
T PRK11366 99 LINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFW 178 (254)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCCceEE
Confidence 36664 45899999 9999999999999999761 10023221100 0001111 1 1
Q ss_pred -----hhhhhhCCCceEEEe-CCCCccccCCCCC-----CCccCCCCCc
Q 014848 174 -----PLLMRALPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDPR 211 (417)
Q Consensus 174 -----~~l~~~Lp~~~~f~a-~~~G~iMg~~~~~-----G~qf~~~~~~ 211 (417)
-+-++.||+.+.++| ++||.||++.++. |+||+|+...
T Consensus 179 Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~ 227 (254)
T PRK11366 179 VNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNS 227 (254)
T ss_pred eehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCC
Confidence 012378999999998 9999999998764 9999997654
No 55
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0009 Score=68.77 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=70.5
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhccC-Cccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh-hhhh
Q 014848 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDL-KDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF-WPLL 176 (417)
Q Consensus 100 v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l-~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~-~~~l 176 (417)
|-+|=||+-| +..-..+++ +|++.+.. |..| |+|||-++.++||+|.|- +|=-||-==+ ..+.. |+-.
T Consensus 224 iflSNGPGDP---~~~~~~i~~-ik~l~~~~iPifGICLGHQllalA~Ga~T~Km-kFGHrG~NhP----V~dl~tgrv~ 294 (368)
T COG0505 224 IFLSNGPGDP---APLDYAIET-IKELLGTKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHP----VKDLDTGRVY 294 (368)
T ss_pred EEEeCCCCCh---hHHHHHHHH-HHHHhccCCCeEEEcHHHHHHHHhcCCceeec-ccCCCCCCcC----cccccCCeEE
Confidence 3444455555 666677888 89998888 9999 999999999999999998 7754442110 00000 1111
Q ss_pred h-----------hhCCCc--eEEEeCCCCccccCCCCC----CCccCCCCC
Q 014848 177 M-----------RALPPD--VIFIADPEGSIMGGGGSI----GPHYSGNDP 210 (417)
Q Consensus 177 ~-----------~~Lp~~--~~f~a~~~G~iMg~~~~~----G~qf~~~~~ 210 (417)
. +.++.+ +.++.--||++=|++|+. .+||+|+..
T Consensus 295 ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAs 345 (368)
T COG0505 295 ITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEAS 345 (368)
T ss_pred EEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCC
Confidence 1 366653 667778899999999999 677777443
No 56
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.03 E-value=0.00093 Score=61.58 Aligned_cols=106 Identities=9% Similarity=-0.020 Sum_probs=69.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e----~~~~~~~ 172 (417)
.|++..++..+-..+. .+. ++.+ ....|.+| |+|+|.|..++|+.+.+. ..++.+ |.+-. -..+..+
T Consensus 44 glii~Gg~~~~~~~~~----~~~-i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~-~~~~~g-~~~v~~~~~~~l~~~~ 116 (188)
T TIGR00888 44 GIILSGGPSSVYAENA----PRA-DEKIFELGVPVLGICYGMQLMAKQLGGEVGRA-EKREYG-KAELEILDEDDLFRGL 116 (188)
T ss_pred EEEECCCCCCcCcCCc----hHH-HHHHHhCCCCEEEECHHHHHHHHhcCceEecC-CCccce-eEEEEEecCCHhhcCC
Confidence 4777777777754322 222 3443 35789999 999999999999988876 555554 32111 0111111
Q ss_pred hhhh---------hhhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCc
Q 014848 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPR 211 (417)
Q Consensus 173 ~~~l---------~~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~ 211 (417)
...+ +..||+.+.+++ ++++.++++.++. |+||+|+...
T Consensus 117 ~~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~QfHPE~~~ 169 (188)
T TIGR00888 117 PDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVTH 169 (188)
T ss_pred CCCcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEeeCCccCC
Confidence 1110 136888888887 7788999999886 9999997654
No 57
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.79 E-value=0.0013 Score=60.22 Aligned_cols=112 Identities=12% Similarity=0.038 Sum_probs=69.5
Q ss_pred hhccceeeCCCCCCC-CChhh-hhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHH
Q 014848 95 EAQAKVCTGPTQTRP-LREDE-AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMN 170 (417)
Q Consensus 95 ~~~~~v~~gp~~~~P-l~~~~-a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~ 170 (417)
+.=..|+++.++..+ ..... .....+. |+.+ ....|.+| |.|+|.++..+|+.+.|. .+..+..|.+-.-+.-.
T Consensus 45 ~~~dgvil~Gg~~~~~~~~~~~~~~~~~~-i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~-~~~~~~g~~~v~~~~~~ 122 (188)
T cd01741 45 DDYDGLVILGGPMSVDEDDYPWLKKLKEL-IRQALAAGKPVLGICLGHQLLARALGGKVGRN-PKGWEIGWFPVTLTEAG 122 (188)
T ss_pred ccCCEEEECCCCccCCccCChHHHHHHHH-HHHHHHCCCCEEEECccHHHHHHHhCCEEecC-CCcceeEEEEEEecccc
Confidence 444456666666655 21111 1223344 6655 34699999 999999999999998887 43323333322111100
Q ss_pred ----hh--hh-h---------hhhhCCCceEEEe-CCCCccccCCCCC---CCccCCC
Q 014848 171 ----TF--WP-L---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGN 208 (417)
Q Consensus 171 ----~~--~~-~---------l~~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~ 208 (417)
.| .| . -+..||+.+.+++ ++++.+++++++. |+||+|+
T Consensus 123 ~~~~l~~~~~~~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~~~~~g~QfHPE 180 (188)
T cd01741 123 KADPLFAGLPDEFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYGDRALGLQFHPE 180 (188)
T ss_pred ccCchhhcCCCcceEEEEeccChhhCCCCCEEeecCCCCCcceEEecCCEEEEccCch
Confidence 00 01 1 1145899999998 7889999999864 9999997
No 58
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.49 E-value=0.0019 Score=69.15 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=93.2
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~----~~~~~~ 172 (417)
..|+++.++..+.+++ +-...+.+++ ..+|++| |.|+|.|...||+.+.+. .-++.| |.+.+. ..+..+
T Consensus 48 dgIIlsGGp~sv~~~~-~p~~~~~i~~---~~~PvLGIC~G~QlLa~~lGG~V~~~-~~~e~G-~~~i~i~~~~~Lf~~l 121 (511)
T PRK00074 48 KGIILSGGPASVYEEG-APRADPEIFE---LGVPVLGICYGMQLMAHQLGGKVERA-GKREYG-RAELEVDNDSPLFKGL 121 (511)
T ss_pred CEEEECCCCcccccCC-CccccHHHHh---CCCCEEEECHHHHHHHHHhCCeEEec-CCcccc-eEEEEEcCCChhhhcC
Confidence 3577777887765533 3444444333 4799999 999999999999999887 334444 222111 122222
Q ss_pred hhhh---------hhhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCccCc----HHHHHHHHh-cCCCCCH---
Q 014848 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMR----LVGALREVL-AGGHLGY--- 230 (417)
Q Consensus 173 ~~~l---------~~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~----l~~iIkkl~-~G~~LT~--- 230 (417)
.... +..+|+.+.++| ++++.++++.|+. |+||||+...... +..++.++. ..++.+.
T Consensus 122 ~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~ 201 (511)
T PRK00074 122 PEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENF 201 (511)
T ss_pred CCceEEEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHH
Confidence 1111 146899999998 7888999998644 9999997654322 344443332 2234442
Q ss_pred -HHHHHHHHHhcCCcc--CCCCCCCCHHHHHHHHH
Q 014848 231 -EEVQGVLRDVLPLQV--DNKAPGVSESLLSAFLI 262 (417)
Q Consensus 231 -eEA~~~m~~IL~~~~--~~~~Gevsd~QigAFL~ 262 (417)
++..+-++..+.-+. -.-+|.++-.-+++++.
T Consensus 202 ~~~~~~~l~~~v~~~~vlva~SGGvDS~vll~ll~ 236 (511)
T PRK00074 202 IEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLH 236 (511)
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCccHHHHHHHHH
Confidence 222233333321000 12378888777776664
No 59
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.47 E-value=0.0014 Score=61.32 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=54.6
Q ss_pred hHHHHHHHhhccCCccc-cccHHHHhHH------------HHhhhhccccC-----CCCCcCCHHHHHH----HHhhhhh
Q 014848 118 VLDTILRSAKGDLKDEE-EVSKAQLGAF------------FSAMTIRANAF-----PEATQWSEGERRA----MNTFWPL 175 (417)
Q Consensus 118 ~~~~~l~~~~~~l~~~~-~~~~~q~gaf------------fga~~~r~~~~-----p~~~~~s~~e~~~----~~~~~~~ 175 (417)
..+.|.+......|.+| |.|+|.++-. +++.+.|. +. ..|..|++-+.+. +..+...
T Consensus 61 ~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~-~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~ 139 (205)
T PRK13141 61 LDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRF-PPEEGLKVPHMGWNQLELKKESPLLKGIPDG 139 (205)
T ss_pred hHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEc-CCCCCCcccEecCccceeCCCChhhhCCCCC
Confidence 45663333457899999 9999999986 67888886 21 2344555333221 1111100
Q ss_pred --------hhhhCCCceEEEe-CCCC-ccccCCCCC---CCccCCCCCc
Q 014848 176 --------LMRALPPDVIFIA-DPEG-SIMGGGGSI---GPHYSGNDPR 211 (417)
Q Consensus 176 --------l~~~Lp~~~~f~a-~~~G-~iMg~~~~~---G~qf~~~~~~ 211 (417)
+.-.+|+.+.+++ +++| .++++..+. |+||+|+...
T Consensus 140 ~~v~~~Hs~~v~~~~~~~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~~~ 188 (205)
T PRK13141 140 AYVYFVHSYYADPCDEEYVAATTDYGVEFPAAVGKDNVFGAQFHPEKSG 188 (205)
T ss_pred CEEEEECeeEeccCCcCeEEEEEeCCcEEEEEEecCCEEEEeCCCccch
Confidence 0023455566666 5555 577765444 9999997653
No 60
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.44 E-value=0.0015 Score=61.01 Aligned_cols=123 Identities=10% Similarity=0.023 Sum_probs=71.1
Q ss_pred hhccceeeCCCCCCCCChh-hhhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCC----HHHH--
Q 014848 95 EAQAKVCTGPTQTRPLRED-EAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGER-- 166 (417)
Q Consensus 95 ~~~~~v~~gp~~~~Pl~~~-~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s----~~e~-- 166 (417)
+.++ |+++.+++.+.... ..-...+.|.+......|.+| |.|+|.++..+|+..+...+.+++|... ..+.
T Consensus 43 ~~d~-iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~ 121 (200)
T PRK13527 43 DCDA-LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGR 121 (200)
T ss_pred cCCE-EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccC
Confidence 4444 55555666553211 111246774555556789999 9999999999998655543444333211 0000
Q ss_pred --------HHHHhh--------hhh-hhhhCCCceEEEe-CCCCccccCCCCC--CCccCCCCCccCcHHHHH
Q 014848 167 --------RAMNTF--------WPL-LMRALPPDVIFIA-DPEGSIMGGGGSI--GPHYSGNDPREMRLVGAL 219 (417)
Q Consensus 167 --------~~~~~~--------~~~-l~~~Lp~~~~f~a-~~~G~iMg~~~~~--G~qf~~~~~~~m~l~~iI 219 (417)
-.+..+ |-. -+..||+...++| ++++ +|+.+... |+||+|.-..+.++-+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~lp~~~~~la~~~~~-~~a~~~~~~~g~QfHPE~~~~~~l~~~f 193 (200)
T PRK13527 122 QRDSFEAEIDLSGLDGPFHAVFIRAPAITKVGGDVEVLAKLDDR-IVAVEQGNVLATAFHPELTDDTRIHEYF 193 (200)
T ss_pred ccccEEEeEeccccCCcceEEEEccccccccCCCeEEEEEECCE-EEEEEECCEEEEEeCCCCCCCCHHHHHH
Confidence 001111 110 1256899999998 5554 67777555 999999876665544333
No 61
>PRK05665 amidotransferase; Provisional
Probab=96.37 E-value=0.01 Score=57.73 Aligned_cols=138 Identities=18% Similarity=0.079 Sum_probs=82.2
Q ss_pred hhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH------
Q 014848 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER------ 166 (417)
Q Consensus 95 ~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~------ 166 (417)
+-.+-|++|= +.-.-+++.-..-+...||++. ...|.+| |.|||.|+-++||.+.+. |. -|+.+-.
T Consensus 57 ~~dgiiitGs-~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~---~~--G~e~G~~~~~~~~ 130 (240)
T PRK05665 57 KFDAYLVTGS-KADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA---SQ--GWGVGIHRYQLAA 130 (240)
T ss_pred cCCEEEECCC-CCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC---CC--CcccceEEEEecC
Confidence 3455555553 3333333333334445577653 4689999 999999999999999886 31 1321110
Q ss_pred --HHHHhhhhhh---------hhhCCCceEEEe-CCCCccccCCCCC---CCccCCCCCccCcHHHHHHHHhcCCCCCHH
Q 014848 167 --RAMNTFWPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREMRLVGALREVLAGGHLGYE 231 (417)
Q Consensus 167 --~~~~~~~~~l---------~~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~~~~~m~l~~iIkkl~~G~~LT~e 231 (417)
.+++.+.+.+ +..||+....++ ++...+-+++... |+||+++...+. +..+|+. . .+.+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~-~~~~l~~-~-~~~~~~~ 207 (240)
T PRK05665 131 HAPWMSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDY-SRALLDL-R-QEHLGEE 207 (240)
T ss_pred CCccccCCCCceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHH-HHHHHHH-h-hhhcCHH
Confidence 0111111111 246999998887 6666666665543 999998766553 3444442 2 2458888
Q ss_pred HHHHHHHHhc
Q 014848 232 EVQGVLRDVL 241 (417)
Q Consensus 232 EA~~~m~~IL 241 (417)
++.+.++.+-
T Consensus 208 ~~~~~~~~l~ 217 (240)
T PRK05665 208 VYSKGVASLA 217 (240)
T ss_pred HHHHHHHHcC
Confidence 8888887775
No 62
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.31 E-value=0.0045 Score=57.87 Aligned_cols=49 Identities=10% Similarity=-0.078 Sum_probs=34.9
Q ss_pred eeCCCCCCCCChhhhhhh-----HHHHHHH-hhccCCccc-cccHHHHhHH------------HHhhhhcc
Q 014848 101 CTGPTQTRPLREDEAFKV-----LDTILRS-AKGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (417)
Q Consensus 101 ~~gp~~~~Pl~~~~a~~~-----~~~~l~~-~~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (417)
.|-||++.| .++... ++.++|+ +..+.|++| |.|+|.|+-. |++.+.|.
T Consensus 40 lii~G~~~~---~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~ 107 (196)
T TIGR01855 40 LILPGVGAF---GAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKL 107 (196)
T ss_pred EEECCCCCH---HHHHHHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEEC
Confidence 444776655 333211 5665464 467799999 9999999998 78988887
No 63
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=96.28 E-value=0.003 Score=60.29 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=67.7
Q ss_pred ccceeeCCCCCCCCChhhhhh------hHHHHHHHhhccCCccc-cccHHHHhHHH-----------Hhhhhccc-----
Q 014848 97 QAKVCTGPTQTRPLREDEAFK------VLDTILRSAKGDLKDEE-EVSKAQLGAFF-----------SAMTIRAN----- 153 (417)
Q Consensus 97 ~~~v~~gp~~~~Pl~~~~a~~------~~~~~l~~~~~~l~~~~-~~~~~q~gaff-----------ga~~~r~~----- 153 (417)
++..++.||++.| +.+.. .++.|.+......|.+| |+|+|.|+-.+ .+.+.|-+
T Consensus 39 ~~d~iIlPG~g~~---~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~ 115 (210)
T CHL00188 39 QVHALVLPGVGSF---DLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVK 115 (210)
T ss_pred hCCEEEECCCCch---HHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCC
Confidence 3556778999998 54422 34566666778899999 99999998754 34444441
Q ss_pred cCCCCCcCCHHHHHHH------Hhhhhhhh-----------hhCCCceEEE---e-C-CCCccccCCCCC--CCccCCCC
Q 014848 154 AFPEATQWSEGERRAM------NTFWPLLM-----------RALPPDVIFI---A-D-PEGSIMGGGGSI--GPHYSGND 209 (417)
Q Consensus 154 ~~p~~~~~s~~e~~~~------~~~~~~l~-----------~~Lp~~~~f~---a-~-~~G~iMg~~~~~--G~qf~~~~ 209 (417)
+.| |-.|.+-+.+.- ..++.++- ...|++...+ + + .++.+|++++.. |+||+|+.
T Consensus 116 ~~p-~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p~~~~~l~~t~~~~~~~~v~a~~~~~i~GvQFHPE~ 194 (210)
T CHL00188 116 VIP-HMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMPKSQACATTTTFYGKQQMVAAIEYDNIFAMQFHPEK 194 (210)
T ss_pred ccC-ccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecCCCCceEEEEEecCCcceEEEEecCCEEEEecCCcc
Confidence 222 334663322110 00111110 1223332222 2 4 367799998766 99999987
Q ss_pred CccCcHHHHHHH
Q 014848 210 PREMRLVGALRE 221 (417)
Q Consensus 210 ~~~m~l~~iIkk 221 (417)
.. ..-..+|+.
T Consensus 195 s~-~~G~~il~n 205 (210)
T CHL00188 195 SG-EFGLWLLRE 205 (210)
T ss_pred cc-HhHHHHHHH
Confidence 63 333344443
No 64
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.16 E-value=0.0051 Score=57.38 Aligned_cols=52 Identities=10% Similarity=-0.089 Sum_probs=37.6
Q ss_pred cceeeCCCCCCCCChhhhh------hhHHHHHHHhhccCCccc-cccHHHHhHH-----------HHhhhhcc
Q 014848 98 AKVCTGPTQTRPLREDEAF------KVLDTILRSAKGDLKDEE-EVSKAQLGAF-----------FSAMTIRA 152 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~------~~~~~~l~~~~~~l~~~~-~~~~~q~gaf-----------fga~~~r~ 152 (417)
....|.||++.| .++. ...+.|.+......|++| |+|+|.|+.. +++.+.|.
T Consensus 38 ~d~lilpG~g~~---~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~ 107 (199)
T PRK13181 38 ADKVILPGVGAF---GQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRF 107 (199)
T ss_pred CCEEEECCCCCH---HHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEc
Confidence 444566888777 3321 234664444567899999 9999999998 78899886
No 65
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.10 E-value=0.003 Score=59.15 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=64.8
Q ss_pred ceeeCCCCCCCCChhhhhhhH------HHHHHHh-hccCCccc-cccHHHHhHH------------HHhhhhcccc----
Q 014848 99 KVCTGPTQTRPLREDEAFKVL------DTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRANA---- 154 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~------~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~~~---- 154 (417)
.|++ ||++.| .++...+ +.|.+.+ ...+|++| |+|.|.|+-. +.+.+.|...
T Consensus 40 ~lil-PG~g~~---~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~ 115 (201)
T PRK13152 40 KLLL-PGVGSF---KEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNL 115 (201)
T ss_pred EEEE-CCCCch---HHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCC
Confidence 3666 999998 6765554 5544433 45899999 9999999976 2255655421
Q ss_pred CCCCCcCCHHHHHHHHhhhhhhhhhCCCc---------------eEEEe-CCCCccc--cCCCCC--CCccCCCCCccCc
Q 014848 155 FPEATQWSEGERRAMNTFWPLLMRALPPD---------------VIFIA-DPEGSIM--GGGGSI--GPHYSGNDPREMR 214 (417)
Q Consensus 155 ~p~~~~~s~~e~~~~~~~~~~l~~~Lp~~---------------~~f~a-~~~G~iM--g~~~~~--G~qf~~~~~~~m~ 214 (417)
.+.|..|.+-+... ...|++.+|.. ..+++ +++|.+| +.++.. |+||+|+...+ .
T Consensus 116 ~~~~~g~~~v~~~~----~~~l~~~l~~~~~~~~vHS~~v~~~~~~v~a~~~~g~~~~~a~~~~~i~GvQFHPE~~~~-~ 190 (201)
T PRK13152 116 KIPHMGWNELEILK----QSPLYQGIPEKSDFYFVHSFYVKCKDEFVSAKAQYGHKFVASLQKDNIFATQFHPEKSQN-L 190 (201)
T ss_pred cCCccCeEEEEECC----CChhhhCCCCCCeEEEEcccEeecCCCcEEEEECCCCEEEEEEecCCEEEEeCCCeecCh-h
Confidence 13467777443110 11133333322 22344 6777443 344333 99999987643 2
Q ss_pred HHHHHHH
Q 014848 215 LVGALRE 221 (417)
Q Consensus 215 l~~iIkk 221 (417)
-.++++.
T Consensus 191 g~~ll~~ 197 (201)
T PRK13152 191 GLKLLEN 197 (201)
T ss_pred hHHHHHH
Confidence 2334443
No 66
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.03 E-value=0.0061 Score=57.12 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=62.6
Q ss_pred ceeeCCCCCCCCChhhhhh------hHHHHHHHhhccCCccc-cccHHHHhHHHH------------hhhhccc---cCC
Q 014848 99 KVCTGPTQTRPLREDEAFK------VLDTILRSAKGDLKDEE-EVSKAQLGAFFS------------AMTIRAN---AFP 156 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~------~~~~~l~~~~~~l~~~~-~~~~~q~gaffg------------a~~~r~~---~~p 156 (417)
.|++ ||++.| ..+.. .++. |+++ ..|++| |+|+|.|+-.++ +.+.|.+ .-+
T Consensus 41 ~iIl-PG~G~~---~~~~~~l~~~~l~~~-i~~~--~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~ 113 (196)
T PRK13170 41 KLFL-PGVGTA---QAAMDQLRERELIDL-IKAC--TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPL 113 (196)
T ss_pred EEEE-CCCCch---HHHHHHHHHcChHHH-HHHc--CCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCC
Confidence 4666 999999 55533 3455 4444 589999 999999999883 3444432 112
Q ss_pred CCCcCCHHH----HHHHHhhhhhh---h---hhCCCceEEEe-CCCCccccCCCCC----CCccCCCCCccCcHHHHHHH
Q 014848 157 EATQWSEGE----RRAMNTFWPLL---M---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREMRLVGALRE 221 (417)
Q Consensus 157 ~~~~~s~~e----~~~~~~~~~~l---~---~~Lp~~~~f~a-~~~G~iMg~~~~~----G~qf~~~~~~~m~l~~iIkk 221 (417)
.|--|.+-. ..+++.+.+.. + ..+|++...++ +..|..|...+.. |+||+|+...+.- ..+|+.
T Consensus 114 p~~G~~~v~~~~~~~l~~~l~~~~~v~~~Hs~~lp~~~~~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G-~~~l~n 192 (196)
T PRK13170 114 PHMGWNQVTPQAGHPLFQGIEDGSYFYFVHSYAMPVNEYTIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAG-AQLLKN 192 (196)
T ss_pred CccccceeEeCCCChhhhCCCcCCEEEEECeeecCCCCcEEEEecCCCeEEEEEEcCCEEEEECCCCCccccc-HHHHHH
Confidence 345554221 11222111110 0 23455545555 5556655433322 9999998876432 234443
No 67
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.00 E-value=0.0034 Score=58.35 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=35.1
Q ss_pred eeeCCCCCCCCChhhh------hhhHHHHHHHh-hccCCccc-cccHHHHhHH------------HHhhhhcc
Q 014848 100 VCTGPTQTRPLREDEA------FKVLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (417)
Q Consensus 100 v~~gp~~~~Pl~~~~a------~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (417)
|++ ||++.| +++ ....+. |+++ ....|++| |.|+|.|+-. |++.+.|.
T Consensus 40 iii-pG~~~~---~~~~~~~~~~~~~~~-i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (198)
T cd01748 40 LIL-PGVGAF---GDAMANLRERGLIEA-LKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRF 107 (198)
T ss_pred EEE-CCCCcH---HHHHHHHHHcChHHH-HHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEEC
Confidence 444 777666 433 134566 5554 57899999 9999999997 88999886
No 68
>PRK08250 glutamine amidotransferase; Provisional
Probab=95.81 E-value=0.0056 Score=59.12 Aligned_cols=111 Identities=13% Similarity=-0.049 Sum_probs=67.9
Q ss_pred ceeeCCCCCCCCC--hhhh----hhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---
Q 014848 99 KVCTGPTQTRPLR--EDEA----FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR--- 167 (417)
Q Consensus 99 ~v~~gp~~~~Pl~--~~~a----~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~--- 167 (417)
-|+++-++..+-. .+.- -...+. ||++ ....|.+| |.|+|.++..|||.+.+. ..++.|.. +.+.+
T Consensus 48 ~vii~GGp~~~~~~~~~~p~~~~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~~e~G~~-~v~lt~~g 124 (235)
T PRK08250 48 LLIVMGGPQSPRTTREECPYFDSKAEQRL-INQAIKAGKAVIGVCLGAQLIGEALGAKYEHS-PEKEIGYF-PITLTEAG 124 (235)
T ss_pred EEEECCCCCChhhccccccccchHHHHHH-HHHHHHcCCCEEEEChhHHHHHHHhCceeccC-CCCceeEE-EEEEcccc
Confidence 4666666665532 1111 122333 6655 45899999 999999999999999987 33444432 22221
Q ss_pred ----HHHhhhhhhh--------hhCCCceEEEe-CCCCccccCCCCC---CCccCCCCCcc
Q 014848 168 ----AMNTFWPLLM--------RALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPRE 212 (417)
Q Consensus 168 ----~~~~~~~~l~--------~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~~~~~ 212 (417)
++..+...+. -.||+....+| ++...+.+.+... |+||+++-..+
T Consensus 125 ~~d~l~~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~~~qa~~~~~~~~g~QfHPE~~~~ 185 (235)
T PRK08250 125 LKDPLLSHFGSTLTVGHWHNDMPGLTDQAKVLATSEGCPRQIVQYSNLVYGFQCHMEFTVE 185 (235)
T ss_pred ccCchhhcCCCCcEEEEEecceecCCCCCEEEECCCCCCceEEEeCCCEEEEeecCcCCHH
Confidence 2222222211 26888888887 5555667777654 99999875555
No 69
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.57 E-value=0.013 Score=58.05 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=37.2
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhc------cCCccc-cccHHHHhHHHHhh-hhccccCCCCCcC
Q 014848 100 VCTGPTQTRPLREDEAFKVLDTILRSAKG------DLKDEE-EVSKAQLGAFFSAM-TIRANAFPEATQW 161 (417)
Q Consensus 100 v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~------~l~~~~-~~~~~q~gaffga~-~~r~~~~p~~~~~ 161 (417)
|++ ||+...+.+....+....|++.+.. .+|++| |+|.|.|...+|+. .++. .++.++.+
T Consensus 58 ~l~-~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~-~~~~~~~~ 125 (273)
T cd01747 58 ILF-PGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLE-ATEATNSA 125 (273)
T ss_pred EEE-CCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccC-CCccccce
Confidence 444 5554444433333444444444432 289999 99999999999996 4444 66667664
No 70
>PRK08136 glycosyl transferase family protein; Provisional
Probab=95.37 E-value=0.12 Score=52.58 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=81.5
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh-hhhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF-WPLL 176 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~-~~~l 176 (417)
.+|+-||..+|+|+.|||..+++.|+ .|.++..|+|||+-||-+|+ . |.+|-+-+..- ....
T Consensus 8 ~~l~~G~~~~~~Lt~eEA~~~~~~il---------~g~~~~~qi~AfL~alr~Kg---E-----T~eElaG~~~a~~~~~ 70 (317)
T PRK08136 8 KEIGRGKNGARDLDRDTARALYGAML---------DGRVPDLELGAILIALRIKG---E-----SEAEMLGFLDAMQAHT 70 (317)
T ss_pred HHHHCCCCCCCCcCHHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhC
Confidence 36788999999999999999999976 26788899999999999999 5 66665443322 1111
Q ss_pred hhh-CCCc---eEEEeCCCCccccCCCCC---------CCc--cCCCCCcc--CcHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014848 177 MRA-LPPD---VIFIADPEGSIMGGGGSI---------GPH--YSGNDPRE--MRLVGALREVLAGGHLGYEEVQGVLRD 239 (417)
Q Consensus 177 ~~~-Lp~~---~~f~a~~~G~iMg~~~~~---------G~q--f~~~~~~~--m~l~~iIkkl~~G~~LT~eEA~~~m~~ 239 (417)
... .|.. ..-+++.+|+---..-++ |+. =||+.... .--.++++.++-.-+++.++++..++.
T Consensus 71 ~~~~~~~~~~~~iD~~gtgGd~~t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~~~~l~~ 150 (317)
T PRK08136 71 IPLTPPAGRPMPVVIPSYNGARKQANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQAQAKLAE 150 (317)
T ss_pred CcCCCCCCCCceEEeCCCCCCCCCcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 111 1211 334456666521111110 333 13332222 335889999988889999999999986
Q ss_pred h
Q 014848 240 V 240 (417)
Q Consensus 240 I 240 (417)
.
T Consensus 151 ~ 151 (317)
T PRK08136 151 G 151 (317)
T ss_pred c
Confidence 3
No 71
>PRK07053 glutamine amidotransferase; Provisional
Probab=95.14 E-value=0.017 Score=55.97 Aligned_cols=116 Identities=9% Similarity=0.022 Sum_probs=66.5
Q ss_pred hhccceeeCCCCCCCCChhhh---hhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhccccCCCCCcC----CH-H
Q 014848 95 EAQAKVCTGPTQTRPLREDEA---FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQW----SE-G 164 (417)
Q Consensus 95 ~~~~~v~~gp~~~~Pl~~~~a---~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~----s~-~ 164 (417)
+..+ |++..++..+-++++. ...++. ||.+ ....|.+| |+|||.++..+||.+.+. ..++-|-. ++ +
T Consensus 47 ~~d~-lii~Ggp~~~~d~~~~p~~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~~e~G~~~i~~t~~g 123 (234)
T PRK07053 47 EPDL-LVVLGGPIGVYDDELYPFLAPEIAL-LRQRLAAGLPTLGICLGAQLIARALGARVYPG-GQKEIGWAPLTLTDAG 123 (234)
T ss_pred CCCE-EEECCCCCCCCCCCcCCcHHHHHHH-HHHHHHCCCCEEEECccHHHHHHHcCCcEecC-CCCeEeEEEEEEeccc
Confidence 3344 5554466555443321 233455 5544 45899999 999999999999999885 33332211 11 1
Q ss_pred HHHHHHhhhhhh--------hhhCCCceEEEe-CCCCccccCCCCC---CCccCCCCCccC
Q 014848 165 ERRAMNTFWPLL--------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREM 213 (417)
Q Consensus 165 e~~~~~~~~~~l--------~~~Lp~~~~f~a-~~~G~iMg~~~~~---G~qf~~~~~~~m 213 (417)
...-+..+.+.. .-.||+....+| ++.....+.+... |+||+++-..++
T Consensus 124 ~~~pl~~~~~~~~~~~~H~d~~~lP~ga~~La~s~~~~~qaf~~g~~~~g~QfHpE~~~~~ 184 (234)
T PRK07053 124 RASPLRHLGAGTPVLHWHGDTFDLPEGATLLASTPACRHQAFAWGNHVLALQFHPEAREDR 184 (234)
T ss_pred cCChhhcCCCcceEEEEeCCEEecCCCCEEEEcCCCCCeeEEEeCCCEEEEeeCccCCHHH
Confidence 111111111110 125888888887 5555566666533 999998766653
No 72
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.01 Score=56.47 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=65.8
Q ss_pred ceeeCCCCCCCCChhh--hhhhHHHHHHHhhccCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-----HHH
Q 014848 99 KVCTGPTQTRPLREDE--AFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-----AMN 170 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~--a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~-----~~~ 170 (417)
-|+++=+|.-. .+++ +..+.+.|.+...-.-|++| |+|||.|..++||++-++++ +.--|.+-+.. +.+
T Consensus 48 giIlsGgp~sv-~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~--~E~G~~~v~~~~~~~~l~~ 124 (198)
T COG0518 48 GIIISGGPMSV-YDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPK--REIGWTPVELTEGDDPLFA 124 (198)
T ss_pred EEEEcCCCCCC-ccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCC--CccceEEEEEecCcccccc
Confidence 34444444332 3455 78888885444444457999 99999999999999999943 22223323332 121
Q ss_pred hhhhhh----------hhhCCCceEEEeCCCCc-cccCCCC-C--CCccCCCCCc
Q 014848 171 TFWPLL----------MRALPPDVIFIADPEGS-IMGGGGS-I--GPHYSGNDPR 211 (417)
Q Consensus 171 ~~~~~l----------~~~Lp~~~~f~a~~~G~-iMg~~~~-~--G~qf~~~~~~ 211 (417)
-+.+.. |..||+.+.++|..+.. +=+.++. . |+||++.-..
T Consensus 125 gl~~~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~~~~~gvQFHpEv~~ 179 (198)
T COG0518 125 GLPDLFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYGKRAYGVQFHPEVTH 179 (198)
T ss_pred CCccccCccccchhCccccCCCCCEEEecCCCChhhheecCCcEEEEeeeeEEeH
Confidence 111111 24699999999844433 3333333 3 9999985544
No 73
>PRK09071 hypothetical protein; Validated
Probab=94.86 E-value=0.33 Score=49.52 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=77.8
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (417)
.+|+.|+...|+|+.|||..+++.|+ .|.++..|+|||+-|+-+|+ . |.+|-+.+..--....
T Consensus 9 k~vg~gk~~~~~Lt~eEa~~~~~~il---------~g~~~~~q~aAfL~alr~kg---e-----T~eEi~g~~~a~r~~~ 71 (323)
T PRK09071 9 RILGKGKRGRRSLTREEARQAMGMIL---------DGEVEDDQLGAFLMLLRVKE---E-----TAEELAGFVEAIRERL 71 (323)
T ss_pred HHHcCCCCCCCCCCHHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhc
Confidence 46889999999999999999998866 25778899999999999999 5 6666555433222111
Q ss_pred hhCCCceEE-EeCCCCccccCCCCC------------CCc--cCCC-CCccCc--HHHHHHHHhcCCCCCHHHHHHHHHH
Q 014848 178 RALPPDVIF-IADPEGSIMGGGGSI------------GPH--YSGN-DPREMR--LVGALREVLAGGHLGYEEVQGVLRD 239 (417)
Q Consensus 178 ~~Lp~~~~f-~a~~~G~iMg~~~~~------------G~q--f~~~-~~~~m~--l~~iIkkl~~G~~LT~eEA~~~m~~ 239 (417)
..+|....+ +.|-+|.= ++.+ |+. -+|+ +.+..+ -.++++.++-.-+++.+++...++.
T Consensus 72 ~~~~~~~~iD~~~gtG~d---~~~~~~~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~~~l~~ 148 (323)
T PRK09071 72 QAPPLAVDLDWPSYAGKR---RHLPWYLLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAEQALEE 148 (323)
T ss_pred ccCCCCCceecCCcCCCC---CCcccHHHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence 122211111 11222111 1111 222 1333 333343 7889999877778999999998886
Q ss_pred h
Q 014848 240 V 240 (417)
Q Consensus 240 I 240 (417)
.
T Consensus 149 ~ 149 (323)
T PRK09071 149 H 149 (323)
T ss_pred c
Confidence 4
No 74
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=94.62 E-value=0.074 Score=51.70 Aligned_cols=55 Identities=5% Similarity=-0.115 Sum_probs=40.2
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHHHHHHh-hccCCccc-cccHHHHhHHHHhhhhcc
Q 014848 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRA 152 (417)
Q Consensus 93 ~~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~ 152 (417)
.|+.--.|+++++++.| +..+ .+++ ++.+ ...+|.+| |+|+|.+...||+.+.+-
T Consensus 52 ~l~~~dgivl~GG~~~~---~~~~-~~~~-i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~ 108 (235)
T cd01746 52 ALKGADGILVPGGFGIR---GVEG-KILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL 108 (235)
T ss_pred hhccCCEEEECCCCCCc---chhh-HHHH-HHHHHHCCceEEEEEhHHHHHHHHHHHHhcCC
Confidence 34444557777788877 4443 3556 4554 45899999 999999999999998764
No 75
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.58 E-value=0.035 Score=53.04 Aligned_cols=47 Identities=15% Similarity=-0.036 Sum_probs=36.2
Q ss_pred ccceeeCCCCCCCCChhhhh------hhHHHHHHHhhccCCccc-cccHHHHhHHHH
Q 014848 97 QAKVCTGPTQTRPLREDEAF------KVLDTILRSAKGDLKDEE-EVSKAQLGAFFS 146 (417)
Q Consensus 97 ~~~v~~gp~~~~Pl~~~~a~------~~~~~~l~~~~~~l~~~~-~~~~~q~gaffg 146 (417)
++...|-||++.+ ..|. -..+.|.+....+.|.+| |+|+|.|+...+
T Consensus 37 ~~d~iIlPG~g~~---~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 37 NSKALILPGDGHF---DKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred cCCEEEECCCCch---HHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 4556779999888 4442 356666777788999999 999999998765
No 76
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=93.96 E-value=0.12 Score=56.03 Aligned_cols=50 Identities=6% Similarity=-0.094 Sum_probs=39.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhhcc
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (417)
-.|.+.+|++.| ...++ +++ ++.++ ..+|.+| |+|+|.+...||..+.+-
T Consensus 345 dGIiLpGG~G~~---~~~g~-i~a-i~~a~e~~iP~LGIClG~Qll~i~~grnv~gl 396 (525)
T TIGR00337 345 DGILVPGGFGER---GVEGK-ILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL 396 (525)
T ss_pred CEEEeCCCCCCh---hhcCh-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCC
Confidence 356677788877 44443 455 67776 7899999 999999999999998873
No 77
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=93.86 E-value=0.018 Score=53.73 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=70.8
Q ss_pred hhhccceeeCCCCCCCCCh-hhhhhhHHHHHHH-hhccCCccc-cccHHHHhHHHH-----------hhhhccccCCCCC
Q 014848 94 LEAQAKVCTGPTQTRPLRE-DEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFS-----------AMTIRANAFPEAT 159 (417)
Q Consensus 94 ~~~~~~v~~gp~~~~Pl~~-~~a~~~~~~~l~~-~~~~l~~~~-~~~~~q~gaffg-----------a~~~r~~~~p~~~ 159 (417)
-+.++-|..| +++.-... .......+. ||+ .....|.+| |.|+|.|+-.+. +.+.|. .|-+.-
T Consensus 35 ~~~d~liipG-G~~~~~~~l~~~~~l~~~-i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~-~~g~~~ 111 (184)
T TIGR03800 35 DEIDGLIIPG-GESTTLSRLLDKYGMFEP-LRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERN-AYGRQV 111 (184)
T ss_pred ccCCEEEECC-CCHHHHHHHHHhccHHHH-HHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEee-ccCCcc
Confidence 3456666666 32221110 011234455 554 456799999 999999998872 455443 443222
Q ss_pred cCCHHHHH--------HHHhhhhh-hhhhCCCceEEEeCCCCccccCCCCC--CCccCCCCCccCcHHHH
Q 014848 160 QWSEGERR--------AMNTFWPL-LMRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLVGA 218 (417)
Q Consensus 160 ~~s~~e~~--------~~~~~~~~-l~~~Lp~~~~f~a~~~G~iMg~~~~~--G~qf~~~~~~~m~l~~i 218 (417)
.+.+.+.+ ++..|... .+..+|+.+.++|..++.+-+.+.+. |+||+|+-....++.++
T Consensus 112 ~s~~~~l~~~~~~~~~~~~~~~h~~~v~~lp~~~~vla~~~~~~~a~~~~~~~gvQfHPE~~~~~~~~~~ 181 (184)
T TIGR03800 112 DSFEAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAKVGNRIVAVRQGNILVSSFHPELTDDHRVHEY 181 (184)
T ss_pred ccEEEEeecccCCCCcceEEEEcCCCcccCCCCeEEEEEeCCeeEEEEeCCEEEEEeCCccCCCchHHHH
Confidence 22211100 11122111 44689999999997777887777665 99999987766666544
No 78
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=93.16 E-value=0.036 Score=51.27 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=64.0
Q ss_pred HHHHHHHhhccCCccc-cccHHHHhHHHHh------------hhhccccCCCCCcCCHHHHHH-------HH-hhhhh-h
Q 014848 119 LDTILRSAKGDLKDEE-EVSKAQLGAFFSA------------MTIRANAFPEATQWSEGERRA-------MN-TFWPL-L 176 (417)
Q Consensus 119 ~~~~l~~~~~~l~~~~-~~~~~q~gaffga------------~~~r~~~~p~~~~~s~~e~~~-------~~-~~~~~-l 176 (417)
.+.|.+......|.+| |.|+|-|+..+++ .+.|. .|.+.-.|.+..... +. .++-. .
T Consensus 59 ~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~-~~g~~~g~~~~~l~~~~~~~~~~~~~~~h~~~ 137 (183)
T cd01749 59 LDPLREFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRN-AFGRQVDSFEADLDIPGLGLGPFPAVFIRAPV 137 (183)
T ss_pred HHHHHHHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEee-ccccccceEEEcCCCCcCCCCccEEEEEECcE
Confidence 4443334456799999 9999999999998 55553 554433333222110 11 11211 2
Q ss_pred hhhCCCceEEEeCCCCccccCCCCC--CCccCCCCCccCcHHHH
Q 014848 177 MRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLVGA 218 (417)
Q Consensus 177 ~~~Lp~~~~f~a~~~G~iMg~~~~~--G~qf~~~~~~~m~l~~i 218 (417)
+..+|+...++|..|+.+-+.+.+. |+||+|+-..+.++.++
T Consensus 138 v~~~p~~~~~la~~~~~~~a~~~~~~~g~qfHPE~~~~~~~~~~ 181 (183)
T cd01749 138 IEEVGPGVEVLAEYDGKIVAVRQGNVLATSFHPELTDDTRIHEY 181 (183)
T ss_pred EEEcCCCcEEEEecCCEEEEEEECCEEEEEcCCccCCCcchhhh
Confidence 2578999999985566665666555 99999988887776654
No 79
>PRK07394 hypothetical protein; Provisional
Probab=91.89 E-value=1.3 Score=45.44 Aligned_cols=125 Identities=23% Similarity=0.207 Sum_probs=76.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhh
Q 014848 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~ 177 (417)
.+|+.||..+|+|+.|||..+++.|+. |.+++.|+|||.-|+-+|+ . |.+|-+.+..--....
T Consensus 10 ~~l~~g~~~~~~Lt~eea~~~~~~il~---------g~~~~~q~aAfL~alr~KG---E-----T~eEiaG~~~a~~~~~ 72 (342)
T PRK07394 10 KKVGSGEHTSKDLTREEAADALKLMLL---------GEATPAQIGAFLIAHRIKR---P-----TPEELAGMLDTYDELG 72 (342)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHhhC---C-----CHHHHHHHHHHHHHhC
Confidence 367889999999999998888888552 5778899999999999999 4 6666544332222111
Q ss_pred hhCC--Cc--eEEEeCCCCc--cccCCCCC---------CCc--cCCCCCcc--Cc--HHHHHHHHhcCCCC-CHHHHHH
Q 014848 178 RALP--PD--VIFIADPEGS--IMGGGGSI---------GPH--YSGNDPRE--MR--LVGALREVLAGGHL-GYEEVQG 235 (417)
Q Consensus 178 ~~Lp--~~--~~f~a~~~G~--iMg~~~~~---------G~q--f~~~~~~~--m~--l~~iIkkl~~G~~L-T~eEA~~ 235 (417)
..++ .+ +..+++.-|| ---..-++ |+. =||+.-.. .. -.++++.++-.-++ +.+++..
T Consensus 73 ~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~ 152 (342)
T PRK07394 73 PKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQE 152 (342)
T ss_pred CCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHH
Confidence 1232 11 2222321111 11111111 222 13432222 23 67899988877776 9999999
Q ss_pred HHHH
Q 014848 236 VLRD 239 (417)
Q Consensus 236 ~m~~ 239 (417)
.++.
T Consensus 153 ~l~~ 156 (342)
T PRK07394 153 GFEQ 156 (342)
T ss_pred HHHH
Confidence 9887
No 80
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=91.10 E-value=0.11 Score=49.23 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=56.8
Q ss_pred hHHHHHHHhh-ccCCccc-cccHHHHhHH------------HHhhhhccc------cCCCCCcCCHHHHHHHHhhhhhhh
Q 014848 118 VLDTILRSAK-GDLKDEE-EVSKAQLGAF------------FSAMTIRAN------AFPEATQWSEGERRAMNTFWPLLM 177 (417)
Q Consensus 118 ~~~~~l~~~~-~~l~~~~-~~~~~q~gaf------------fga~~~r~~------~~p~~~~~s~~e~~~~~~~~~~l~ 177 (417)
..+.|++.+. ...|.+| |+|+|.|+-. +++.+.|.+ +.| |--|.+-+... ...|+
T Consensus 65 ~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p-~~G~~~v~~~~----~~~lf 139 (209)
T PRK13146 65 LGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVP-HMGWNTVDQTR----DHPLF 139 (209)
T ss_pred cHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccC-ccChHHeeeCC----CChhc
Confidence 3556677663 6899999 9999999998 788888751 233 44465332211 11134
Q ss_pred hhCCC----------------ceEEEe-CCCCc-cccCCCCC---CCccCCCCCccCcHHHHHHH
Q 014848 178 RALPP----------------DVIFIA-DPEGS-IMGGGGSI---GPHYSGNDPREMRLVGALRE 221 (417)
Q Consensus 178 ~~Lp~----------------~~~f~a-~~~G~-iMg~~~~~---G~qf~~~~~~~m~l~~iIkk 221 (417)
+.+|+ ...++| +..+. +++.+.+. |+||+|+...+ .-.++|+.
T Consensus 140 ~~~~~~~~v~~~Hs~~v~~~~~~~~la~s~~~~~~~a~~~~~~i~GvQFHPE~s~~-~G~~ll~n 203 (209)
T PRK13146 140 AGIPDGARFYFVHSYYAQPANPADVVAWTDYGGPFTAAVARDNLFATQFHPEKSQD-AGLALLRN 203 (209)
T ss_pred cCCCCCCEEEEEeEEEEEcCCCCcEEEEEcCCCEEEEEEecCCEEEEEcCCcccHH-HHHHHHHH
Confidence 33332 233444 44443 45554433 99999987632 34445554
No 81
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=90.89 E-value=1.7 Score=35.45 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 014848 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA 280 (417)
Q Consensus 215 l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~A 280 (417)
++++|+++-+|. +.++++.-|...+ +++|+..++..=-.|---|.+.+|+..+|+.
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~--------~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLF--------SDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 688999999997 7789999999999 8999999999988888899999999999975
No 82
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=90.05 E-value=0.52 Score=36.97 Aligned_cols=46 Identities=33% Similarity=0.460 Sum_probs=30.2
Q ss_pred CCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHH
Q 014848 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAM 169 (417)
Q Consensus 107 ~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~ 169 (417)
+++|+.+|+..+++.|+. |.++..|+|||..|+-+|+ . |.+|-..+
T Consensus 12 g~~Ls~~e~~~~~~~i~~---------g~~s~~qiaAfL~al~~kg---e-----t~~Eiag~ 57 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILD---------GEVSDAQIAAFLMALRMKG---E-----TPEEIAGF 57 (66)
T ss_dssp T----HHHHHHHHHHHHT---------TSS-HHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---c-----CHHHHHHH
Confidence 489999998888887542 5778899999999999999 5 66665544
No 83
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=89.74 E-value=0.25 Score=46.20 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=57.4
Q ss_pred HHHHHHh-hccCCccc-cccHHHHhHHHHhh----------hhccccCCCCCcCCHHHHH------HHH-hhhhh-hhhh
Q 014848 120 DTILRSA-KGDLKDEE-EVSKAQLGAFFSAM----------TIRANAFPEATQWSEGERR------AMN-TFWPL-LMRA 179 (417)
Q Consensus 120 ~~~l~~~-~~~l~~~~-~~~~~q~gaffga~----------~~r~~~~p~~~~~s~~e~~------~~~-~~~~~-l~~~ 179 (417)
+. +|++ ....|+++ |.|+|-++-.+|+. .++.|.+.+...+.+.+-. .+. .+|-. .+..
T Consensus 63 ~~-i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~H~d~v~~ 141 (189)
T PRK13525 63 EP-LREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGEPFPAVFIRAPYIEE 141 (189)
T ss_pred HH-HHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCCCeEEEEEeCceeec
Confidence 44 5554 44689999 99999999999883 3344455443333221100 011 11221 3367
Q ss_pred CCCceEEEeCCCCccccCCCCC--CCccCCCCCccCcHH
Q 014848 180 LPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLV 216 (417)
Q Consensus 180 Lp~~~~f~a~~~G~iMg~~~~~--G~qf~~~~~~~m~l~ 216 (417)
||+...++|..++.+-+.+.+. |+||+|+-..+.++-
T Consensus 142 lp~~~~vlA~~~~~~~~~~~~~~~g~QfHPE~~~~~~~~ 180 (189)
T PRK13525 142 VGPGVEVLATVGGRIVAVRQGNILATSFHPELTDDTRVH 180 (189)
T ss_pred cCCCcEEEEEcCCEEEEEEeCCEEEEEeCCccCCCchHH
Confidence 9999999984444444455444 999999776665543
No 84
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=88.00 E-value=0.28 Score=46.03 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=24.8
Q ss_pred hHHHHHHHh-hccCCccc-cccHHHHhHH------------HHhhhhcc
Q 014848 118 VLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (417)
Q Consensus 118 ~~~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (417)
..+. |+++ ....|.++ |.|+|.++.. +++.+.+.
T Consensus 60 ~~~~-i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (200)
T PRK13143 60 LRDV-ILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF 107 (200)
T ss_pred HHHH-HHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence 3444 6655 45689999 9999999963 67777664
No 85
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=87.81 E-value=5.5 Score=41.27 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=70.8
Q ss_pred CCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhh--CCCceE
Q 014848 108 RPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRA--LPPDVI 185 (417)
Q Consensus 108 ~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~--Lp~~~~ 185 (417)
++|+.+||...++.|+. |.++..|+|||..|+-+|+ . |++|-.-+..--...... .|....
T Consensus 15 ~~L~~~eA~~l~~~il~---------g~~~~~qi~A~L~Alr~Kg---e-----t~eEi~G~~~am~~~~~~~~~p~~~~ 77 (338)
T COG0547 15 RDLDREEARELFKAILS---------GEASPAQIGAFLTALRIKG---E-----TPEEIAGFAEAMREHAPKLPVPAADP 77 (338)
T ss_pred CCCCHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHhc---C-----CHHHHHHHHHHHHHhcccCCCCCCCC
Confidence 89999999999999765 6788899999999999999 5 666654443322211112 222211
Q ss_pred EEeCCCCccccCCCCC-----------------CCcc--CCCCC-cc-CcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 014848 186 FIADPEGSIMGGGGSI-----------------GPHY--SGNDP-RE-MRLVGALREVLAGGHLGYEEVQGVLRDV 240 (417)
Q Consensus 186 f~a~~~G~iMg~~~~~-----------------G~qf--~~~~~-~~-m~l~~iIkkl~~G~~LT~eEA~~~m~~I 240 (417)
=||-|.+++- |+.. ||+.. +. .--.++++.++-.-+++.++++..++..
T Consensus 78 ------vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~~l~~~ 147 (338)
T COG0547 78 ------VDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAARALEET 147 (338)
T ss_pred ------CCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence 0233333322 3332 23222 22 2247888888888899999999999876
No 86
>PRK05380 pyrG CTP synthetase; Validated
Probab=83.13 E-value=2.8 Score=45.81 Aligned_cols=47 Identities=9% Similarity=-0.113 Sum_probs=33.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTI 150 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~ 150 (417)
.|++.++.+.+-.+ + .++. +++++ ..+|.+| |+|.|.+...||+.+.
T Consensus 346 GIIlpGGfG~~~~~---g-~i~~-i~~a~e~~iPiLGIClGmQll~va~Ggnv~ 394 (533)
T PRK05380 346 GILVPGGFGERGIE---G-KILA-IRYARENNIPFLGICLGMQLAVIEFARNVL 394 (533)
T ss_pred EEEecCCCCccccc---c-HHHH-HHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence 45555566555222 2 3555 66665 5899999 9999999999999884
No 87
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=82.55 E-value=15 Score=39.88 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhCCC--c-
Q 014848 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPP--D- 183 (417)
Q Consensus 107 ~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~Lp~--~- 183 (417)
+++|+.|||...++.|+ + |.++..|+|||+-||-+|+ . |.+|-+.+..--......++. .
T Consensus 205 g~~Lt~~ea~~~~~~il--------~-g~~~~~q~~AfL~alr~kg---e-----t~~El~g~~~a~~~~~~~~~~~~~~ 267 (534)
T PRK14607 205 GEDLSFEEAEDVMEDIT--------D-GNATDAQIAGFLTALRMKG---E-----TADELAGFASVMREKSRHIPAPSPR 267 (534)
T ss_pred CCCCCHHHHHHHHHHHH--------c-CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCcCCCCCCC
Confidence 45999999888877754 2 6788899999999999999 4 666665544332211111221 1
Q ss_pred eEEEeCCCCccccCCCCC--------------CCc--cCCCCC--ccCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 014848 184 VIFIADPEGSIMGGGGSI--------------GPH--YSGNDP--REMRLVGALREVLAGGHLGYEEVQGVLRDV 240 (417)
Q Consensus 184 ~~f~a~~~G~iMg~~~~~--------------G~q--f~~~~~--~~m~l~~iIkkl~~G~~LT~eEA~~~m~~I 240 (417)
..=++..-| .+.++ |+. -+|+.- +..--.++++.++-.-+++.+++...++..
T Consensus 268 ~~D~~gtgg----dg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~~l~~~ 338 (534)
T PRK14607 268 TVDTCGTGG----DGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAASVLRET 338 (534)
T ss_pred ceEEccCCC----CCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 111111111 11111 222 123221 122356788888766678889998888864
No 88
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=82.48 E-value=2.1 Score=43.72 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=66.2
Q ss_pred CCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhh---CCC
Q 014848 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRA---LPP 182 (417)
Q Consensus 106 ~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~---Lp~ 182 (417)
.+|+|+.|||...++.|+ + |.++..|+|||+-|+-+|+ . |++|-+.+. ..+.+. +|.
T Consensus 12 ~g~~Lt~~Ea~~~~~~il--------~-g~~~~~q~~AfL~alr~kg---e-----t~~El~g~~---~a~~~~~~~~~~ 71 (339)
T PRK00188 12 EGEDLSEEEAEELMDAIM--------S-GEATPAQIAAFLTALRVKG---E-----TVDEIAGAA---RAMREHAVPVPD 71 (339)
T ss_pred CCCCCCHHHHHHHHHHHH--------c-CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHH---HHHHHhCCcCCC
Confidence 359999999988888866 2 5778899999999999999 4 666655433 322222 211
Q ss_pred ceEEEeCCCCccccCCCC---C--------------CCc--cCCCCC--ccCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 014848 183 DVIFIADPEGSIMGGGGS---I--------------GPH--YSGNDP--REMRLVGALREVLAGGHLGYEEVQGVLRDV 240 (417)
Q Consensus 183 ~~~f~a~~~G~iMg~~~~---~--------------G~q--f~~~~~--~~m~l~~iIkkl~~G~~LT~eEA~~~m~~I 240 (417)
.-. .. ||-|.+++ + |+. -+|+.- +..--.++++.++-.-.++.++++..++..
T Consensus 72 ~~~-~i----Di~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~l~~~ 145 (339)
T PRK00188 72 PDD-AV----DIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARCLEEV 145 (339)
T ss_pred CCC-CC----cccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 100 11 12222211 1 222 122211 223356788888766688999998888854
No 89
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.36 E-value=41 Score=35.64 Aligned_cols=142 Identities=11% Similarity=0.021 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhhcCCCCC---CCCCCceeeCCCCC
Q 014848 230 YEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR--ELKAYCLAFDDELGPPPV---ADVKSLTHYGEPYD 304 (417)
Q Consensus 230 ~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~e--ELaGfa~Amr~~~~~~~~---~~~~~LD~~GtgyD 304 (417)
.+..+.+.+.++ ..++++.-+-.++-.++-+....+ -...+.+.+.+....... .....+-.+|++|.
T Consensus 160 ~~~~~~~~~~L~-------~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGv 232 (424)
T PRK05703 160 PPEFAELYKRLK-------RSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGV 232 (424)
T ss_pred hHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccccccccCCcEEEEECCCCC
Confidence 344556667777 778888888888777766654444 344555566554432211 11124678899999
Q ss_pred CCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CCCHHHHHHHHhhc-CCcEEEEeC
Q 014848 305 GNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVLQAKELLEDE-EIGFAYVSL 377 (417)
Q Consensus 305 G~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvL----eaLGi~i--~ls~eea~~~Le~~-~~GfaFL~a 377 (417)
||+ |.-..+++.+.+...|.+|+.-..+.. ..| ..+-| +.+|+++ ..++++..+.|++. ...+.+++.
T Consensus 233 GKT-Tt~~kLA~~~~~~~~g~~V~li~~D~~--r~~--a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt 307 (424)
T PRK05703 233 GKT-TTLAKLAARYALLYGKKKVALITLDTY--RIG--AVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT 307 (424)
T ss_pred CHH-HHHHHHHHHHHHhcCCCeEEEEECCcc--HHH--HHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC
Confidence 997 222211111111234678887765442 112 23333 4477764 45666666665431 157889998
Q ss_pred CccCHH
Q 014848 378 REARPS 383 (417)
Q Consensus 378 ~~~~Pa 383 (417)
+-+.+.
T Consensus 308 ~G~~~~ 313 (424)
T PRK05703 308 AGRSQR 313 (424)
T ss_pred CCCCCC
Confidence 876655
No 90
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=78.41 E-value=9.9 Score=41.48 Aligned_cols=114 Identities=20% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhCCCceE
Q 014848 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVI 185 (417)
Q Consensus 106 ~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~Lp~~~~ 185 (417)
.+|+|+.|||...++.|+ + |.+++.|+|||+.|+-+|+ . |.+|-+.+..--......++..-.
T Consensus 209 ~~~~Lt~eea~~~~~~il--------~-g~~~~~qi~AfL~alr~kg---e-----t~eEl~g~~~a~~~~~~~~~~~~~ 271 (531)
T PRK09522 209 QAQTLSQQESHQLFSAVV--------R-GELKPEQLAAALVSMKIRG---E-----HPNEIAGAATALLENAAPFPRPDY 271 (531)
T ss_pred cCCCCCHHHHHHHHHHHH--------c-CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCCCCCCCC
Confidence 578999999877777754 2 6788899999999999999 5 666665544332211112221100
Q ss_pred EEeCCCCccccCCCC---C--------------CCcc--CCCCCc--cCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 014848 186 FIADPEGSIMGGGGS---I--------------GPHY--SGNDPR--EMRLVGALREVLAGGHLGYEEVQGVLRDV 240 (417)
Q Consensus 186 f~a~~~G~iMg~~~~---~--------------G~qf--~~~~~~--~m~l~~iIkkl~~G~~LT~eEA~~~m~~I 240 (417)
-.. |+.|.+.+ + |+.- +|+.-. ..--.++++.++=.-+++.+++...++..
T Consensus 272 ~~i----D~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~~l~~~ 343 (531)
T PRK09522 272 LFA----DIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDEL 343 (531)
T ss_pred Ccc----cccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 011 12233221 1 2221 232211 12357788888666688888888888864
No 91
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=75.90 E-value=3.4 Score=40.45 Aligned_cols=168 Identities=13% Similarity=0.026 Sum_probs=92.0
Q ss_pred cccccccCCCCCCchhhhhhccceeeCCCCCCCCChhhhhhhHHHHHHHh-------hccCCccc-cccHHHHhHHHHhh
Q 014848 77 ISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-------KGDLKDEE-EVSKAQLGAFFSAM 148 (417)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~-------~~~l~~~~-~~~~~q~gaffga~ 148 (417)
+-.+||-.+-.-|...=|+.--.++|+= |+ -+||-=.|-|++-| --+.|++| |.|||-+..+-|+.
T Consensus 40 ~wd~frV~~gefP~~~Dl~ky~gfvIsG--S~----~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~ 113 (245)
T KOG3179|consen 40 QWDLFRVIDGEFPQEEDLEKYDGFVISG--SK----HDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGK 113 (245)
T ss_pred eeEEEEEecCCCCChhhhhhhceEEEeC--Cc----ccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCc
Confidence 4566777776777777677655555542 22 24443334433322 23579999 99999999999999
Q ss_pred hhccccCCCCCcCC----HHHHHHHHhhhhhhhhhCCCceEEEeCCCCccccCC---------CCCCCc-------cC-C
Q 014848 149 TIRANAFPEATQWS----EGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGG---------GSIGPH-------YS-G 207 (417)
Q Consensus 149 ~~r~~~~p~~~~~s----~~e~~~~~~~~~~l~~~Lp~~~~f~a~~~G~iMg~~---------~~~G~q-------f~-~ 207 (417)
+.|+.+=|.-+--| ....+-.+.|| ..|..+-++-|+.-.+.-+. .+--+| ++ =
T Consensus 114 Vgra~KG~~~~lg~itivk~~~~~~~yFG-----~~~~~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~f 188 (245)
T KOG3179|consen 114 VGRAPKGPDLGLGSITIVKDAEKPEKYFG-----EIPKSLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCF 188 (245)
T ss_pred cccCCCCCcccccceEEEEecccchhhcc-----cchhhhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEe
Confidence 99994333111111 00111223344 44444444422222222111 111111 11 1
Q ss_pred CCCccCc---HHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHH
Q 014848 208 NDPREMR---LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIG 263 (417)
Q Consensus 208 ~~~~~m~---l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~A 263 (417)
++.|+.+ +.+++.++...+..+++.++.+-..+= ...++.|++--+-=
T Consensus 189 QGHPEyn~eil~~ivdrv~~~k~~~eef~~~ak~~~E--------n~~~d~~~~~~icK 239 (245)
T KOG3179|consen 189 QGHPEYNKEILFEIVDRVLGTKLVEEEFAEKAKKTME--------NPEPDRQLAVSICK 239 (245)
T ss_pred cCCchhhHHHHHHHHHHHhcchhhHHHHHHHHHHhhh--------CCCccHHHHHHHHH
Confidence 3456654 667888888877777777777777763 55566676654433
No 92
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=73.66 E-value=6.1 Score=40.31 Aligned_cols=113 Identities=23% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhh---CCC
Q 014848 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRA---LPP 182 (417)
Q Consensus 106 ~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~---Lp~ 182 (417)
.+|+|+.|||.-+++.|+. |.++..|+|||.-|+-+|+ . |.+|-+.+ +..+.+. ++.
T Consensus 6 ~~~~Lt~eEa~~~~~~il~---------g~~~~~q~~AfL~alr~kg---e-----t~~Elag~---~~a~~~~~~~~~~ 65 (330)
T TIGR01245 6 DGKDLSRDEAEQLMKEIMS---------GEASPAQIAAILAALRIKG---E-----TPEEITGF---AKAMREHAVKVPG 65 (330)
T ss_pred cCCCcCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHH---HHHHHHhCCCCCC
Confidence 5789999998888888662 5677799999999999999 4 55664443 3333222 211
Q ss_pred --ceEEE-eCCCC-ccccCCC---CC---------CCc--cCCCCC-c-cCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 014848 183 --DVIFI-ADPEG-SIMGGGG---SI---------GPH--YSGNDP-R-EMRLVGALREVLAGGHLGYEEVQGVLRDV 240 (417)
Q Consensus 183 --~~~f~-a~~~G-~iMg~~~---~~---------G~q--f~~~~~-~-~m~l~~iIkkl~~G~~LT~eEA~~~m~~I 240 (417)
.-.++ .|..| + |-+. ++ |+. -+++.- + ..--.++++.++=.-+++.+++...++..
T Consensus 66 ~~~~~~iD~~gtggd--g~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~~~l~~~ 141 (330)
T TIGR01245 66 RPVEDLVDIVGTGGD--GANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVARSLEET 141 (330)
T ss_pred ccCCCcccccCCCCC--CCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 00111 11211 1 1111 00 222 122211 1 12246788888666688899998888754
No 93
>PLN02641 anthranilate phosphoribosyltransferase
Probab=72.73 E-value=31 Score=35.72 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=65.9
Q ss_pred CCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhCCCceEE
Q 014848 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIF 186 (417)
Q Consensus 107 ~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~Lp~~~~f 186 (417)
+++|+.|||..+++.|+. + +++.|+|||+.|+-+|+ . |.+|-+.+..--......+|..
T Consensus 14 g~~Lt~eEa~~~~~~il~---------~-~~~~qigAfL~alr~kg---e-----t~eEiag~~~a~~~~~~~~~~~--- 72 (343)
T PLN02641 14 GTDLTEEEAEAALDFLLD---------D-ADEAQISAFLVLLRAKG---E-----TFEEIAGLARAMIKRARKVDGL--- 72 (343)
T ss_pred CCCCCHHHHHHHHHHHHc---------C-CCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCCCCCC---
Confidence 349999999888888663 3 45689999999999999 5 5666554433221111123210
Q ss_pred EeCCCCccccCCC---CC--------------CCcc--CCCCCcc--CcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 014848 187 IADPEGSIMGGGG---SI--------------GPHY--SGNDPRE--MRLVGALREVLAGGHLGYEEVQGVLRDV 240 (417)
Q Consensus 187 ~a~~~G~iMg~~~---~~--------------G~qf--~~~~~~~--m~l~~iIkkl~~G~~LT~eEA~~~m~~I 240 (417)
++.=|+.|.+. ++ |+.- +|+.-.. .--.++++.++-.-+++.+++.+.++..
T Consensus 73 --~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~l~~~ 145 (343)
T PLN02641 73 --VDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRCVEEV 145 (343)
T ss_pred --CCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence 00112333322 11 3321 2332222 3367888888766789999999998864
No 94
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=71.84 E-value=1.2e+02 Score=32.63 Aligned_cols=151 Identities=18% Similarity=0.159 Sum_probs=89.3
Q ss_pred cHHHHHHHHhcCCCCCHHHHHH----HHHHhcCCccCCCCCCCCHHHHHHHHHHHHh--cCC------CH-HH-HHHHHH
Q 014848 214 RLVGALREVLAGGHLGYEEVQG----VLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TD-RE-LKAYCL 279 (417)
Q Consensus 214 ~l~~iIkkl~~G~~LT~eEA~~----~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~--KGE------T~-eE-LaGfa~ 279 (417)
++...++++.....||++...+ +-..++ ..+++....-.|+-.++- .|+ +. +. +..+.+
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl-------~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALL-------QADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYE 76 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 4677899998888899985554 555666 789999888888887753 332 22 22 334444
Q ss_pred HHHhhcCCCC----CCCCC-CceeeCCCCCCCCCcccchHH--HHHHHhhcCCcEEeecCCCCCCCCCCcHHH----HHH
Q 014848 280 AFDDELGPPP----VADVK-SLTHYGEPYDGNTRFFRSTLF--VAAVRSCYGESCLLHGAEWMPPKGGVTEEQ----MLK 348 (417)
Q Consensus 280 Amr~~~~~~~----~~~~~-~LD~~GtgyDG~~rtfNiSt~--aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaD----vLe 348 (417)
.+.+..+... ....+ .+-.||.+|.||+ +++ +|..+...|.+|+.-..+...+ + ..+ +.+
T Consensus 77 ~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKT-----TtaakLA~~L~~~g~kV~lV~~D~~R~--a--a~eQL~~la~ 147 (437)
T PRK00771 77 ELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKT-----TTAAKLARYFKKKGLKVGLVAADTYRP--A--AYDQLKQLAE 147 (437)
T ss_pred HHHHHhCCCccccccCCCCeEEEEECCCCCcHH-----HHHHHHHHHHHHcCCeEEEecCCCCCH--H--HHHHHHHHHH
Confidence 4444333211 11112 3578899999997 222 2223456689998877665333 2 333 345
Q ss_pred hCCCCCCCC-----HHH-HH---HHHhhcCCcEEEEeCCccCH
Q 014848 349 FMGASTNLS-----VLQ-AK---ELLEDEEIGFAYVSLREARP 382 (417)
Q Consensus 349 aLGi~i~ls-----~ee-a~---~~Le~~~~GfaFL~a~~~~P 382 (417)
.+|+++... +.+ +. +.+.+ ..+.+++.+--++
T Consensus 148 ~~gvp~~~~~~~~d~~~i~~~al~~~~~--~DvVIIDTAGr~~ 188 (437)
T PRK00771 148 KIGVPFYGDPDNKDAVEIAKEGLEKFKK--ADVIIVDTAGRHA 188 (437)
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHhhc--CCEEEEECCCccc
Confidence 577765432 222 22 33344 5788888875444
No 95
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=70.05 E-value=1.2e+02 Score=30.10 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCC--
Q 014848 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP-- 289 (417)
Q Consensus 215 l~~iIkkl~~G~---~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~-- 289 (417)
++++|..+..+. .+ .++...+.+.++ ...+++.-.-.++--++-.....+-...+.+.+.+.....+
T Consensus 116 lk~~l~~~~~~~~~~~~-~~~l~~l~~~L~-------~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 187 (282)
T TIGR03499 116 LRELLERLLAGLAWLQR-DPEGAKLLERLL-------RAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEE 187 (282)
T ss_pred HHHHHHHHHHhhhhccc-CHHHHHHHHHHH-------HCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCcc
Confidence 455555554431 22 245566777777 67788877777777665432222234456666665543211
Q ss_pred CC---CCCCceeeCCCCCCCCCcccchHHHHHHH--hhc-C-CcEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CC
Q 014848 290 VA---DVKSLTHYGEPYDGNTRFFRSTLFVAAVR--SCY-G-ESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NL 356 (417)
Q Consensus 290 ~~---~~~~LD~~GtgyDG~~rtfNiSt~aA~Vl--Aa~-G-v~V~kHGnrs~ssKsGvTsaDvL----eaLGi~i--~l 356 (417)
.. ....+-++|+.|.||+ +|++.+.. +.. | .+|...-.+..- .| ..+-| +.+|+++ ..
T Consensus 188 ~~~~~~~~vi~~vGptGvGKT-----Tt~~kLa~~~~~~~g~~~V~li~~D~~r--~~--a~eql~~~~~~~~~p~~~~~ 258 (282)
T TIGR03499 188 DEILEQGGVIALVGPTGVGKT-----TTLAKLAARFVLEHGNKKVALITTDTYR--IG--AVEQLKTYAKILGVPVKVAR 258 (282)
T ss_pred ccccCCCeEEEEECCCCCCHH-----HHHHHHHHHHHHHcCCCeEEEEECCccc--hh--HHHHHHHHHHHhCCceeccC
Confidence 11 1114678899999997 33333322 222 4 888887766422 22 33333 3467664 44
Q ss_pred CHHHHHHHHhhcC-CcEEEEeC
Q 014848 357 SVLQAKELLEDEE-IGFAYVSL 377 (417)
Q Consensus 357 s~eea~~~Le~~~-~GfaFL~a 377 (417)
++.+..+.++.-. ..+.+++.
T Consensus 259 ~~~~l~~~l~~~~~~d~vliDt 280 (282)
T TIGR03499 259 DPKELRKALDRLRDKDLILIDT 280 (282)
T ss_pred CHHHHHHHHHHccCCCEEEEeC
Confidence 6666666665410 34445443
No 96
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=68.73 E-value=4.9 Score=46.82 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=68.5
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcc-CCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh-hhh
Q 014848 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGD-LKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF-WPL 175 (417)
Q Consensus 99 ~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~-l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~-~~~ 175 (417)
.|-++=||+.| +-.-..++. +|+..++ .|+-| |+|||-++-+.||+|.+- +|=-+|+-=+ .+... |.-
T Consensus 213 GlflSNGPGdP---e~~~~~v~~-vr~lL~~~~PvfGIClGHQllA~AaGakT~Km-KyGNRGhNiP----~~~~~tGrc 283 (1435)
T KOG0370|consen 213 GLFLSNGPGDP---ELCPLLVQN-VRELLESNVPVFGICLGHQLLALAAGAKTYKM-KYGNRGHNIP----CTCRATGRC 283 (1435)
T ss_pred eEEEeCCCCCc---hhhHHHHHH-HHHHHhCCCCeEEEehhhHHHHHhhCCceEEe-eccccCCCcc----ceeccCceE
Confidence 35678889999 887788888 7777655 99999 999999999999999987 7755444210 00000 000
Q ss_pred -----------hhhhCCCceE--EEeCCCCccccCCCCC----CCccCCCCCcc
Q 014848 176 -----------LMRALPPDVI--FIADPEGSIMGGGGSI----GPHYSGNDPRE 212 (417)
Q Consensus 176 -----------l~~~Lp~~~~--f~a~~~G~iMg~~~~~----G~qf~~~~~~~ 212 (417)
-..+||.... |+=--||+==|+-|.. .+||+|+..+-
T Consensus 284 ~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~G 337 (1435)
T KOG0370|consen 284 FITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPG 337 (1435)
T ss_pred EEEecCCceeeccccccCCCchheeecccCCCceEecCCCCceeeecCCcCCCC
Confidence 0146776554 4434455555666666 67788755543
No 97
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=63.25 E-value=10 Score=41.49 Aligned_cols=43 Identities=12% Similarity=-0.129 Sum_probs=28.1
Q ss_pred eeeCCCCCCCCChhhhhhh------HHHHHHHhhccCCccc-cccHHHHhHHH
Q 014848 100 VCTGPTQTRPLREDEAFKV------LDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (417)
Q Consensus 100 v~~gp~~~~Pl~~~~a~~~------~~~~l~~~~~~l~~~~-~~~~~q~gaff 145 (417)
..+-||++.+ .++... .+.|-+......|.+| |+|+|.|+-.+
T Consensus 47 ~lIlpG~gs~---~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 47 RLIFPGVGAF---GSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESS 96 (538)
T ss_pred EEEECCCCCH---HHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 3444887776 444333 3343333455799999 99999999764
No 98
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=63.11 E-value=6.6 Score=37.41 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=32.6
Q ss_pred cceeeCCCCCCCCChhhhhhh-----HHHHHHHhhccCCccc-cccHHHHhHHH
Q 014848 98 AKVCTGPTQTRPLREDEAFKV-----LDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (417)
Q Consensus 98 ~~v~~gp~~~~Pl~~~~a~~~-----~~~~l~~~~~~l~~~~-~~~~~q~gaff 145 (417)
+-..|-||++.+ ..+... ++.+|++ ....|.+| |+|.|.|+---
T Consensus 38 ~D~lIlPG~g~~---~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 38 AETIILPGVGHF---KDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred CCEEEECCCCCH---HHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhc
Confidence 444588999988 666552 2334777 56899999 99999998776
No 99
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=60.69 E-value=5.9 Score=39.34 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=59.4
Q ss_pred hhccCCccc-cccHHHHhHHHHhhhhcccc----CCCCCcC-----------CHHHHHHHHhhh----------hhhhhh
Q 014848 126 AKGDLKDEE-EVSKAQLGAFFSAMTIRANA----FPEATQW-----------SEGERRAMNTFW----------PLLMRA 179 (417)
Q Consensus 126 ~~~~l~~~~-~~~~~q~gaffga~~~r~~~----~p~~~~~-----------s~~e~~~~~~~~----------~~l~~~ 179 (417)
....+|++| |=|-|-|=-+|||.+.+-=+ ...|.|- .+-+-++-..+| .+-.+.
T Consensus 104 Le~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~~~~VNS~HhQaIk~ 183 (243)
T COG2071 104 LERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESEFMVNSFHHQAIKK 183 (243)
T ss_pred HHcCCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcCccceeecchHHHHHHH
Confidence 345899999 99999999999987655310 0112222 222222333333 333478
Q ss_pred CCCceEEEe-CCCCccccCCCCC-----CCccCCCCCcc
Q 014848 180 LPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDPRE 212 (417)
Q Consensus 180 Lp~~~~f~a-~~~G~iMg~~~~~-----G~qf~~~~~~~ 212 (417)
|-+.+.+.| ++||.|=++-++. |+|++|+-..+
T Consensus 184 La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~ 222 (243)
T COG2071 184 LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVD 222 (243)
T ss_pred hCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhcc
Confidence 999999998 9999999999986 99998855444
No 100
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=57.85 E-value=83 Score=33.55 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=84.7
Q ss_pred CCCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhC--C-
Q 014848 105 TQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--P- 181 (417)
Q Consensus 105 ~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~L--p- 181 (417)
..+++|+.||+...++.|++ |.++..|+|||+-|+-+|+ . |.+|...+..--......+ |
T Consensus 9 ~~g~~Lt~eE~~~~~~~i~~---------G~~~d~QiaAfLmAl~~kG---e-----T~eEi~g~t~Am~~~~~~l~~~~ 71 (405)
T TIGR02644 9 RDGKKLSDEEINFFINGYTN---------GEIPDYQMSALLMAIYFNG---M-----TDEETAYLTKAMIDSGEVLDLSS 71 (405)
T ss_pred HcCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcCCCcc
Confidence 46789999997777666432 4566689999999999999 5 7777665544322111222 2
Q ss_pred --CceEEEeCCCCccccCCCCC---------CCcc--CCCC-Ccc-CcHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCcc
Q 014848 182 --PDVIFIADPEGSIMGGGGSI---------GPHY--SGND-PRE-MRLVGALREVL-AGGHLGYEEVQGVLRDVLPLQV 245 (417)
Q Consensus 182 --~~~~f~a~~~G~iMg~~~~~---------G~qf--~~~~-~~~-m~l~~iIkkl~-~G~~LT~eEA~~~m~~IL~~~~ 245 (417)
..+.=+.+.=|+ |-+-++ |+.- ++++ ... ---.+.|+.+. =.-+|+.+|++..++..= +..
T Consensus 72 ~~~~~vD~~gTGGd--G~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~~~~~l~~~G-~~f 148 (405)
T TIGR02644 72 LPGPKVDKHSTGGV--GDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAEFIEIVNKVG-LAI 148 (405)
T ss_pred cCCCeeEEeCCCCC--CCCchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHHHHHHHHHcC-eEE
Confidence 112111222222 222111 3321 1222 111 22556777776 455999999999999841 111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 014848 246 DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFD 282 (417)
Q Consensus 246 ~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr 282 (417)
-....+..|+- --|+++|-.=-|.+-+-=.+-..+
T Consensus 149 l~~~~~l~PAd--k~l~~lRd~~~Tv~sipLi~aSim 183 (405)
T TIGR02644 149 IGQTKDLAPAD--KKLYALRDVTGTVDSIPLIASSIM 183 (405)
T ss_pred ecCccccCcch--hHHHHHhhcccccCcHHHHHHHHH
Confidence 11122444432 246777755558887733333443
No 101
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=56.92 E-value=30 Score=32.89 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 014848 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (417)
Q Consensus 215 l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~ 286 (417)
..+++..+.+.+.+..++-.+.++.++ ...++=..++-+.++-++|..|+++-..|++++++.+.
T Consensus 34 ~~~vl~~l~~~~~~~~~~~~~~l~~iv-------~~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~ 98 (198)
T TIGR03481 34 HGALLDVMKEAKKLGYQGRYTKLAPAV-------REAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSI 98 (198)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHH-------HHhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 445666666666666777788888888 77889999999999999999999999999999997654
No 102
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.56 E-value=3.5e+02 Score=31.42 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhhcCCCC-----CCCCCCceeeCC
Q 014848 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYC-LAFDDELGPPP-----VADVKSLTHYGE 301 (417)
Q Consensus 228 LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa-~Amr~~~~~~~-----~~~~~~LD~~Gt 301 (417)
........+.+.++ +.++++.-.-.|+--+.- +.+.+++..++ +.+.+...... ......+-.+|+
T Consensus 122 ~~~~~~~~l~~~Ll-------~~dv~~~la~~l~~~l~~-~~~~~~~~~~l~~~L~~~l~il~~~~~~~~~g~Vi~lVGp 193 (767)
T PRK14723 122 GRDPLRASLFRWLL-------GAGFSGQLARALLERLPV-GYDRPAAMAWIRNELATHLPVLRDEDALLAQGGVLALVGP 193 (767)
T ss_pred cChHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhhccCCCcccCCCeEEEEECC
Confidence 33333455667777 778887776666665543 34555544433 33333221110 111113578899
Q ss_pred CCCCCCCcccchHHHHHHHh----hcC-CcEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CCCHHHHHHHHhhc-C
Q 014848 302 PYDGNTRFFRSTLFVAAVRS----CYG-ESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVLQAKELLEDE-E 369 (417)
Q Consensus 302 gyDG~~rtfNiSt~aA~VlA----a~G-v~V~kHGnrs~ssKsGvTsaDvL----eaLGi~i--~ls~eea~~~Le~~-~ 369 (417)
.|.||+ |+++.+++ ..| .+|..-..+. +++.+.+-| +.+|+++ ..+++++.+.+++. +
T Consensus 194 nGvGKT------TTiaKLA~~~~~~~G~kkV~lit~Dt----~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 194 TGVGKT------TTTAKLAARCVAREGADQLALLTTDS----FRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCCcHH------HHHHHHHhhHHHHcCCCeEEEecCcc----cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 999996 44555543 334 4676655543 232244444 4678765 35788877776542 1
Q ss_pred CcEEEEeCCccCHHhhhhHHHhhh
Q 014848 370 IGFAYVSLREARPSLYSLIGLREH 393 (417)
Q Consensus 370 ~GfaFL~a~~~~PaL~~l~~lRk~ 393 (417)
..+.+++.+-.+|....+...-+.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~ 287 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAM 287 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHH
Confidence 467899998866655554443333
No 103
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=51.99 E-value=24 Score=30.51 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=47.4
Q ss_pred CCccCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 014848 209 DPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (417)
Q Consensus 209 ~~~~m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~ 283 (417)
+-|..++..++.-+.+- ||.+|..++...+.. ......++..++.+...+.-.--|++|+.-....+..
T Consensus 19 GvP~~Dy~PLlALL~r~--Ltd~ev~~Va~~L~~----~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa 87 (96)
T PF11829_consen 19 GVPPTDYVPLLALLRRR--LTDDEVAEVAAELAA----RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAA 87 (96)
T ss_dssp -B-HHHHHHHHHHHTTT--S-HHHHHHHHHHHHH----HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHhccc--CCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 34555666666655444 999999999999982 1122338899999999998888899999888777663
No 104
>PRK04350 thymidine phosphorylase; Provisional
Probab=48.03 E-value=1.1e+02 Score=33.62 Aligned_cols=185 Identities=17% Similarity=0.165 Sum_probs=94.6
Q ss_pred HHHHHhCCCcccccCcccccccccCCCCCCc-hhhhhhccceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccccccH
Q 014848 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPN-QTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSK 138 (417)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~ 138 (417)
...++|++++++..+-.. .++|. ..+++ + ...+++|+.||+.-.++.|+ + |.++.
T Consensus 58 ~~~~~l~~~~g~~v~v~~--------a~~p~S~~~I~---k----k~~G~~Ls~eE~~~~i~~i~--------~-g~~sd 113 (490)
T PRK04350 58 SAFRRLGVSEGDEVEVSH--------APPPESLSAIR---K----KIDGEKLDKEEIEAIIRDIV--------A-GRYSD 113 (490)
T ss_pred HHHHHhCCCCCCeEEEec--------CCCCccHHHHH---H----HHcCCCCCHHHHHHHHHHHH--------c-CCCCH
Confidence 445888888887654322 22222 22222 2 23578899999666665532 2 46666
Q ss_pred HHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhC--CCceEEE-eCCCCccccCCCCC---------CCcc-
Q 014848 139 AQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--PPDVIFI-ADPEGSIMGGGGSI---------GPHY- 205 (417)
Q Consensus 139 ~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~L--p~~~~f~-a~~~G~iMg~~~~~---------G~qf- 205 (417)
.|++||.-|+-+|+ . |.+|...++.--......+ +... ++ -|-.|=+-|-.-++ |+.-
T Consensus 114 ~qiaAfL~Al~~kG---~-----t~~Ei~~lt~AM~~~g~~l~~~~~~-~vDkhgTGGd~g~t~S~~~apivAA~Gv~Va 184 (490)
T PRK04350 114 IELSAFLTASAING---L-----DMDEIEALTRAMVETGERLDWDRPP-VVDKHSIGGVPGNRTTLIVVPIVAAAGLTIP 184 (490)
T ss_pred HHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcccCCCCC-eEEecCCCCCCCCCEeHHHHHHHHhCCCcee
Confidence 89999999999999 5 6676655443222111223 2111 11 12222111100001 2220
Q ss_pred --CCCCCcc-CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcc-CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014848 206 --SGNDPRE-MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQV-DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAF 281 (417)
Q Consensus 206 --~~~~~~~-m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~-~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Am 281 (417)
.+.+... ---.+.++.+. .-+|+.+|++..++.+= +.. -+-.....|+- -.+.++|-. .|.|-+--++--+
T Consensus 185 KhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~~l~~~G-~~flfG~a~~l~PAd--k~l~~vR~~-l~vds~~li~aSI 259 (490)
T PRK04350 185 KTSSRAITSPAGTADTMEVLA-PVDLSVEEIKRVVEKVG-GCLVWGGAVNLSPAD--DILIRVERP-LSIDPRGQLVASI 259 (490)
T ss_pred eecCCCCCCCCchHHHHHHhh-cCCCCHHHHHHHHHHcC-EEEEECCccccCHHH--HHHHHHhhh-cCCCcHHHHHHHH
Confidence 1111111 12456778886 66999999999999741 000 01122333322 345555555 5666665555555
Q ss_pred H
Q 014848 282 D 282 (417)
Q Consensus 282 r 282 (417)
.
T Consensus 260 m 260 (490)
T PRK04350 260 L 260 (490)
T ss_pred h
Confidence 4
No 105
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.55 E-value=2.1e+02 Score=30.74 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=89.4
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCccCCCCCCCCHHHHHHHHHHHHhc--CC------CHHH--HHHHHH
Q 014848 214 RLVGALREVLAGGHLGYEEVQGVLRDV----LPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TDRE--LKAYCL 279 (417)
Q Consensus 214 ~l~~iIkkl~~G~~LT~eEA~~~m~~I----L~~~~~~~~Gevsd~QigAFL~ALR~K--GE------T~eE--LaGfa~ 279 (417)
++..+++++.....|+++.+.++++.| + .-+++....-.|+--++-+ |+ ++.+ +.-+.+
T Consensus 8 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl-------eaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 8 SITSALRSMSNATVIDEEVLNAMLKEICTALL-------ESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 467789999988999999887776654 5 6788888888888777643 22 2221 222333
Q ss_pred HHHhhcCCC--CC-C--CCC-CceeeCCCCCCCCCcccchHHHHH---HHhhcCCcEEeecCCCCCCCCCCcHHHHH---
Q 014848 280 AFDDELGPP--PV-A--DVK-SLTHYGEPYDGNTRFFRSTLFVAA---VRSCYGESCLLHGAEWMPPKGGVTEEQML--- 347 (417)
Q Consensus 280 Amr~~~~~~--~~-~--~~~-~LD~~GtgyDG~~rtfNiSt~aA~---VlAa~Gv~V~kHGnrs~ssKsGvTsaDvL--- 347 (417)
.+.+.+++. +. . ..+ .+-.||.+|.||+ |+++- .++..|.+|+.-..+..-+ + ..+-|
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKT------TtaaKLA~~l~~~G~kV~lV~~D~~R~--a--A~eQLk~~ 150 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKT------TTCTKLAYYYQRKGFKPCLVCADTFRA--G--AFDQLKQN 150 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHH------HHHHHHHHHHHHCCCCEEEEcCcccch--h--HHHHHHHH
Confidence 444333321 11 1 111 3578899999996 33333 3456699999887765332 2 34443
Q ss_pred -HhCCCCCC-----CCHHH----HHHHHhhcCCcEEEEeCCccCHH
Q 014848 348 -KFMGASTN-----LSVLQ----AKELLEDEEIGFAYVSLREARPS 383 (417)
Q Consensus 348 -eaLGi~i~-----ls~ee----a~~~Le~~~~GfaFL~a~~~~Pa 383 (417)
+.+|+++. .+|.+ +.+.+.+.+.-+.+++.+--++.
T Consensus 151 a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~ 196 (429)
T TIGR01425 151 ATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQ 196 (429)
T ss_pred hhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcc
Confidence 34566533 23322 22223222367889999865544
No 106
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.49 E-value=3.5e+02 Score=27.60 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC--C---CHHHHHH-HHHHHHhhcCCC
Q 014848 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--E---TDRELKA-YCLAFDDELGPP 288 (417)
Q Consensus 215 l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KG--E---T~eELaG-fa~Amr~~~~~~ 288 (417)
+.+-++++..++.++.+-..++.+.++ ..+++....-.++-.++-+. + +.+++.. +.+.+.+...+.
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~l~~~L~-------~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 103 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDLLEELEELLI-------EADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPV 103 (318)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcC
Confidence 444566666677888888888888888 78888887777777776542 1 4455444 333555444311
Q ss_pred --C--CC--CCCCceeeCCCCCCCCCcccchHHH--HHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCC-----
Q 014848 289 --P--VA--DVKSLTHYGEPYDGNTRFFRSTLFV--AAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN----- 355 (417)
Q Consensus 289 --~--~~--~~~~LD~~GtgyDG~~rtfNiSt~a--A~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~----- 355 (417)
+ .. ....+-.+|++|.||+ |+++ |..++..|.+|+.-+.+-......-.....-+..|+++.
T Consensus 104 ~~~~~~~~~~~~vi~lvGpnGsGKT-----Tt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 104 EKPLNIEEKKPFVILVVGVNGVGKT-----TTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred CccccccCCCCeEEEEECCCCCcHH-----HHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC
Confidence 1 10 1113578899999986 2222 223356688999888764222000001223455676642
Q ss_pred CCHHH-----HHHHHhhcCCcEEEEeCCccCH
Q 014848 356 LSVLQ-----AKELLEDEEIGFAYVSLREARP 382 (417)
Q Consensus 356 ls~ee-----a~~~Le~~~~GfaFL~a~~~~P 382 (417)
.++.. ....+.+ +..+.+++.+--++
T Consensus 179 ~dpa~~v~~~l~~~~~~-~~D~ViIDTaGr~~ 209 (318)
T PRK10416 179 ADPASVAFDAIQAAKAR-GIDVLIIDTAGRLH 209 (318)
T ss_pred CCHHHHHHHHHHHHHhC-CCCEEEEeCCCCCc
Confidence 23321 1122222 26788888886554
No 107
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.03 E-value=4.4e+02 Score=28.57 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=47.1
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHh----hcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCC--CHHHHHHHHhhcC
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRS----CYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL--SVLQAKELLEDEE 369 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlA----a~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~l--s~eea~~~Le~~~ 369 (417)
+-.+|++|.||+ |+++.+++ ..|.+|..-..+...+-.--......+.+|+++.. +..++.+.++..+
T Consensus 226 i~lvGptGvGKT------TtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~ 299 (432)
T PRK12724 226 VFFVGPTGSGKT------TSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDG 299 (432)
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCC
Confidence 567899999996 34444432 45788888877663331110012233567887542 2455566665433
Q ss_pred CcEEEEeCCccCH
Q 014848 370 IGFAYVSLREARP 382 (417)
Q Consensus 370 ~GfaFL~a~~~~P 382 (417)
..+.+++.+-+.|
T Consensus 300 ~D~VLIDTaGr~~ 312 (432)
T PRK12724 300 SELILIDTAGYSH 312 (432)
T ss_pred CCEEEEeCCCCCc
Confidence 5677888776654
No 108
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.78 E-value=3e+02 Score=29.55 Aligned_cols=133 Identities=9% Similarity=0.087 Sum_probs=77.4
Q ss_pred HHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--C---CCHHHHHHHHHHHHhhcCCCC----CCCCCCceeeCCCCCC
Q 014848 235 GVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--R---ETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPYDG 305 (417)
Q Consensus 235 ~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~K--G---ET~eELaGfa~Amr~~~~~~~----~~~~~~LD~~GtgyDG 305 (417)
++.+.+. +.++++.-+-.++-.++-+ . .+.+++...+........+.. ......+-.+|+.|.|
T Consensus 146 ~~~~~L~-------~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvG 218 (407)
T PRK12726 146 DFVKFLK-------GRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVG 218 (407)
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCC
Confidence 5566666 7788888777777766544 1 245555555444333332221 1111235788999889
Q ss_pred CCCcccchHHHHHH--HhhcCCcEEeecCCCCCCCCCCcHHHH----HHhCCCCC--CCCHHHHHHHHhhc----CCcEE
Q 014848 306 NTRFFRSTLFVAAV--RSCYGESCLLHGAEWMPPKGGVTEEQM----LKFMGAST--NLSVLQAKELLEDE----EIGFA 373 (417)
Q Consensus 306 ~~rtfNiSt~aA~V--lAa~Gv~V~kHGnrs~ssKsGvTsaDv----LeaLGi~i--~ls~eea~~~Le~~----~~Gfa 373 (417)
|+ ++++.+. +...|.+|...-.+... .| ..+- -+.+|+++ ..++++..+.++.- +.-+.
T Consensus 219 KT-----Tt~akLA~~l~~~g~~V~lItaDtyR--~g--AveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~V 289 (407)
T PRK12726 219 KT-----TTLVKLGWQLLKQNRTVGFITTDTFR--SG--AVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHI 289 (407)
T ss_pred HH-----HHHHHHHHHHHHcCCeEEEEeCCccC--cc--HHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEE
Confidence 87 3333222 23458888887766432 23 3333 34478764 46888887766531 25788
Q ss_pred EEeCCccCHH
Q 014848 374 YVSLREARPS 383 (417)
Q Consensus 374 FL~a~~~~Pa 383 (417)
+++.+-.+|-
T Consensus 290 LIDTAGr~~~ 299 (407)
T PRK12726 290 LIDTVGRNYL 299 (407)
T ss_pred EEECCCCCcc
Confidence 9999876653
No 109
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=40.75 E-value=96 Score=29.78 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 014848 216 VGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (417)
Q Consensus 216 ~~iIkkl~~G~~L---T~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~ 286 (417)
.+++..+.+.+.. ..++.+..++..+ ...++=..++.+.++-.+|.-|+++-.-|++++++.+.
T Consensus 36 ~~vl~~l~~~~~~~~~~~~~~~~~v~~~l-------~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv 102 (211)
T PRK15117 36 QKTFDRLKNEQPKIRANPDYLRTIVDQEL-------LPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLK 102 (211)
T ss_pred HHHHHHHHhCHHhhccCHHHHHHHHHHHc-------cccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 3455555554432 5788888989998 88999999999999999999999999999999998764
No 110
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.44 E-value=40 Score=32.74 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=58.1
Q ss_pred CccCcHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 014848 210 PREMRLVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (417)
Q Consensus 210 ~~~m~l~~iIkkl~~G~---~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~ 286 (417)
.......+.+..+.+++ ..+....+..++..+ ...++-.-++++.++=..|.-|+++...|.+|++..+.
T Consensus 32 ~v~~~a~~~ls~lk~~~~~~k~dp~~l~~~v~~~l-------~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~ 104 (202)
T COG2854 32 LVQEAADKVLSILKNNQAKIKQDPQYLRQIVDQEL-------LPYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLE 104 (202)
T ss_pred HHHHHHHHHHHHHhccchhhccCHHHHHHHHHHHh-------hhhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Confidence 33334555666666664 789999999999999 89999999999999999999999999999999997654
No 111
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.59 E-value=4.3e+02 Score=28.69 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=80.3
Q ss_pred HHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHh--cCC---CHHHHHHHH-HHHHhhcCCCC-C-CCCCCceeeCCCCCC
Q 014848 234 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE---TDRELKAYC-LAFDDELGPPP-V-ADVKSLTHYGEPYDG 305 (417)
Q Consensus 234 ~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~--KGE---T~eELaGfa-~Amr~~~~~~~-~-~~~~~LD~~GtgyDG 305 (417)
..+.+.+. +.++++.-+-.++-.+.. ... +.+|+..++ +.+.+...... . .....+-.+|++|.|
T Consensus 181 ~~i~~~L~-------~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvG 253 (436)
T PRK11889 181 QKVIRMLE-------QNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVG 253 (436)
T ss_pred HHHHHHHH-------HCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCc
Confidence 44566666 677777777777765533 122 444444433 33333222111 1 111246789999999
Q ss_pred CCCcccchHHHHHH---HhhcCCcEEeecCCCCCCCCCCcHHHHH---HhCCCCC--CCCHHHHHHHHhhc----CCcEE
Q 014848 306 NTRFFRSTLFVAAV---RSCYGESCLLHGAEWMPPKGGVTEEQML---KFMGAST--NLSVLQAKELLEDE----EIGFA 373 (417)
Q Consensus 306 ~~rtfNiSt~aA~V---lAa~Gv~V~kHGnrs~ssKsGvTsaDvL---eaLGi~i--~ls~eea~~~Le~~----~~Gfa 373 (417)
|+ |+++.+ +...|.+|..--.+... .| ..+++- +.+|+++ ..++++..+.++.- +..+.
T Consensus 254 KT------TTiaKLA~~L~~~GkkVglI~aDt~R--ia-AvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvV 324 (436)
T PRK11889 254 KT------TTLAKMAWQFHGKKKTVGFITTDHSR--IG-TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYI 324 (436)
T ss_pred HH------HHHHHHHHHHHHcCCcEEEEecCCcc--hH-HHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEE
Confidence 97 223322 34567888876654321 12 133333 3578875 36788887777431 14688
Q ss_pred EEeCCccCH-HhhhhHHHhhhhCC
Q 014848 374 YVSLREARP-SLYSLIGLREHIKK 396 (417)
Q Consensus 374 FL~a~~~~P-aL~~l~~lRk~LG~ 396 (417)
+++.+--.+ ....+..+++.+..
T Consensus 325 LIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 325 LIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred EEeCccccCcCHHHHHHHHHHHhh
Confidence 898875433 33446666665543
No 112
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.27 E-value=4.9e+02 Score=27.52 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC-----CCHHHHHHH-HHHHHhhcCCC-C-CC-C-CCCc
Q 014848 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR-----ETDRELKAY-CLAFDDELGPP-P-VA-D-VKSL 296 (417)
Q Consensus 227 ~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KG-----ET~eELaGf-a~Amr~~~~~~-~-~~-~-~~~L 296 (417)
.++.+..+.+.+.++ ..++++...-.++--++-+. ++.+.+.-. ...+.+..... + .. . ...+
T Consensus 105 ~~~~~~~~~l~~~L~-------~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi 177 (388)
T PRK12723 105 EINHPTILKIEDILR-------ENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVF 177 (388)
T ss_pred ccCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEE
Confidence 345555666666666 67888777777766554431 122222221 22232222111 1 11 1 1135
Q ss_pred eeeCCCCCCCCCcccchHHHHHHHhh-------cCCcEEeecCCCCCCCCCCcHHH----HHHhCCCCCC--CCHHHHHH
Q 014848 297 THYGEPYDGNTRFFRSTLFVAAVRSC-------YGESCLLHGAEWMPPKGGVTEEQ----MLKFMGASTN--LSVLQAKE 363 (417)
Q Consensus 297 D~~GtgyDG~~rtfNiSt~aA~VlAa-------~Gv~V~kHGnrs~ssKsGvTsaD----vLeaLGi~i~--ls~eea~~ 363 (417)
-.+|+.|.||+ |+++.+++. .|.+|..-..+.- ..| +.+ ..+.+|+++. .++++..+
T Consensus 178 ~lvGptGvGKT------TT~aKLA~~~~~~~~~~g~~V~lit~Dt~--R~a--a~eQL~~~a~~lgvpv~~~~~~~~l~~ 247 (388)
T PRK12723 178 ILVGPTGVGKT------TTIAKLAAIYGINSDDKSLNIKIITIDNY--RIG--AKKQIQTYGDIMGIPVKAIESFKDLKE 247 (388)
T ss_pred EEECCCCCCHH------HHHHHHHHHHHhhhccCCCeEEEEeccCc--cHH--HHHHHHHHhhcCCcceEeeCcHHHHHH
Confidence 78899999996 444444432 3778887766542 122 333 3344788743 35555555
Q ss_pred HHhh-cCCcEEEEeCCccCHH-hhhhHHHhhhhC
Q 014848 364 LLED-EEIGFAYVSLREARPS-LYSLIGLREHIK 395 (417)
Q Consensus 364 ~Le~-~~~GfaFL~a~~~~Pa-L~~l~~lRk~LG 395 (417)
.|++ .+..+.+++.+..+|. ...+..+++.+.
T Consensus 248 ~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 4422 1267888888876663 223455555543
No 113
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=39.18 E-value=42 Score=30.50 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 014848 216 VGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (417)
Q Consensus 216 ~~iIkkl~~G~~L---T~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~ 286 (417)
.+++..+..++.. +.++.++.++.++ ...++=..++-+.++=.++..|++|-..|++++++.+.
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~v-------~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~ 72 (170)
T PF05494_consen 6 DDVLSILKDNKSKYKQDPEARRAKIEDIV-------DPYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLV 72 (170)
T ss_dssp HHHHHHHHT-HHHHTT-HHHHHHHHHHHT-------GGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccCCHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHH
Confidence 4456666665533 4688899999999 89999999999999999999999999999999997654
No 114
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.10 E-value=5.1e+02 Score=27.35 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhcCCCC------CCCCCCceeeCCCCCC
Q 014848 234 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--ETDRELKAYCLAFDDELGPPP------VADVKSLTHYGEPYDG 305 (417)
Q Consensus 234 ~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KG--ET~eELaGfa~Amr~~~~~~~------~~~~~~LD~~GtgyDG 305 (417)
..+++.++ +-.+++...-.++-.+.-.. .+.++...+.........+.. ......+-.+|+.|.|
T Consensus 77 ~~l~~~L~-------~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvG 149 (374)
T PRK14722 77 GALTKYLF-------AAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVG 149 (374)
T ss_pred HHHHHHHH-------HCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCC
Confidence 45556666 66777755555555554332 244444444333332222110 1111245789999999
Q ss_pred CCCcccchHHHHHHHh----hcC-CcEEeecCCCCCCCCCCcHHHHH----HhCCCCCC--C---CHHHHHHHHhhcCCc
Q 014848 306 NTRFFRSTLFVAAVRS----CYG-ESCLLHGAEWMPPKGGVTEEQML----KFMGASTN--L---SVLQAKELLEDEEIG 371 (417)
Q Consensus 306 ~~rtfNiSt~aA~VlA----a~G-v~V~kHGnrs~ssKsGvTsaDvL----eaLGi~i~--l---s~eea~~~Le~~~~G 371 (417)
|+ |+++.+++ ..| .+|.....+..-. | ..+-| +.+|+++. . +...+.+.+.+ ..
T Consensus 150 KT------TtiakLA~~~~~~~G~~~V~lit~D~~R~--g--a~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~--~D 217 (374)
T PRK14722 150 KT------TTTAKLAARCVMRFGASKVALLTTDSYRI--G--GHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN--KH 217 (374)
T ss_pred HH------HHHHHHHHHHHHhcCCCeEEEEecccccc--c--HHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC--CC
Confidence 86 34444433 235 4677666555322 2 34444 46787753 2 33444455556 68
Q ss_pred EEEEeCCccCHHhhhhHHHhhhh
Q 014848 372 FAYVSLREARPSLYSLIGLREHI 394 (417)
Q Consensus 372 faFL~a~~~~PaL~~l~~lRk~L 394 (417)
+.+++.+-+.|-...+......+
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHH
Confidence 89999999888766666665554
No 115
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=38.01 E-value=28 Score=37.44 Aligned_cols=224 Identities=14% Similarity=0.088 Sum_probs=119.5
Q ss_pred eCCCCCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhC-
Q 014848 102 TGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL- 180 (417)
Q Consensus 102 ~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~L- 180 (417)
-.+..++.|+.||+.-.++.|+ + |.++..|+|||+-|+-+|+ . |++|...+..--..-...+
T Consensus 9 ~kk~~g~~Lt~eE~~~~~~~i~--------~-G~~~d~QiaAfLmAl~~kG---~-----t~eEi~~lt~Am~~sg~~i~ 71 (440)
T PRK05820 9 RKKRDGGALSDEEIDWFIDGYT--------D-GTVSDGQIAALAMAIFFNG---M-----TRPERVALTLAMRDSGEVLD 71 (440)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH--------c-CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcCC
Confidence 3566889999999666666632 2 5666699999999999999 5 7777665544322111222
Q ss_pred -CC---ceEEEe-CCCCccccCCCCC---------CCcc--CCCC-C-ccCcHHHHHHHH-hcCCCCCHHHHHHHHHHhc
Q 014848 181 -PP---DVIFIA-DPEGSIMGGGGSI---------GPHY--SGND-P-REMRLVGALREV-LAGGHLGYEEVQGVLRDVL 241 (417)
Q Consensus 181 -p~---~~~f~a-~~~G~iMg~~~~~---------G~qf--~~~~-~-~~m~l~~iIkkl-~~G~~LT~eEA~~~m~~IL 241 (417)
|. .-.++- |..|=+ |-+-++ |+.- +++. . ...--.+.++.+ +=.-+++.+|+++.++..=
T Consensus 72 ~~~~d~~~~~vDkhgTGGd-G~niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~e~~~~~l~~~G 150 (440)
T PRK05820 72 WSSLNLNGPIVDKHSTGGV-GDKISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSNDRFREILKDVG 150 (440)
T ss_pred CccccCCCCeEEEcCCCCC-CccHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCHHHHHHHHHHcC
Confidence 10 001221 333222 221111 3331 1221 1 112256778887 6777999999999998741
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCceeeCCCCCCCC-CcccchHHHH---
Q 014848 242 PLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT-RFFRSTLFVA--- 317 (417)
Q Consensus 242 ~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~LD~~GtgyDG~~-rtfNiSt~aA--- 317 (417)
+..-...+++.++-- .+.++|-.--|.|.+-=.+-.+.++-...-. +.-.+|. .-|+|.. ++..-.--+|
T Consensus 151 -~~~~~~~~~l~PAdk--~l~~lRdvt~tvds~pli~aSImSKK~A~G~-~~lvlDV--k~G~gAfmkt~~~A~~La~~m 224 (440)
T PRK05820 151 -VAIIGQTSDLAPADK--RLYALRDVTATVESIPLITASILSKKLAEGL-DALVLDV--KVGSGAFMKTYEEARELARSM 224 (440)
T ss_pred -eEEEcCchhcChHHH--HHHHHhcccCCCChHHHHHHHHHHHHHHcCC-CeEEEEc--CCCCCCCCCCHHHHHHHHHHH
Confidence 001111234555443 5777887777888876666555543111101 1113455 4444443 1211111111
Q ss_pred -HHHhhcCCcEE---eecCCCCCCCCCCcHHHHHHhC
Q 014848 318 -AVRSCYGESCL---LHGAEWMPPKGGVTEEQMLKFM 350 (417)
Q Consensus 318 -~VlAa~Gv~V~---kHGnrs~ssKsGvTsaDvLeaL 350 (417)
-+-..+|.++. ..++..++..-| ++-+|.|++
T Consensus 225 v~ig~~~g~~~~a~lTdm~qPlG~~iG-nalEv~Eai 260 (440)
T PRK05820 225 VEVANGAGVRTTALLTDMNQPLASSAG-NALEVREAV 260 (440)
T ss_pred HHHHHHcCCeEEEEEccCCCcccCccc-hHHHHHHHH
Confidence 13356787765 667777776555 566664443
No 116
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=36.97 E-value=66 Score=32.92 Aligned_cols=127 Identities=13% Similarity=-0.004 Sum_probs=68.3
Q ss_pred hccceeeCCCCCCCCChhhhhh-hHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhhccccCCCC----CcC----CHH
Q 014848 96 AQAKVCTGPTQTRPLREDEAFK-VLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEA----TQW----SEG 164 (417)
Q Consensus 96 ~~~~v~~gp~~~~Pl~~~~a~~-~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~----~~~----s~~ 164 (417)
-.|-|+||=--.+.--|+..+. -|..|++-++ ...|.++ |-|||++.+++|+. -|- +.. |.. ...
T Consensus 100 ~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi-~k~---~~~~K~~Gv~~~~~~~~ 175 (302)
T PRK05368 100 FDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGI-PKY---TLPEKLSGVFEHRVLDP 175 (302)
T ss_pred CCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCC-ccC---CCCCceeEEEEEEEcCC
Confidence 3577888855443322232211 1333333332 2589999 99999999999996 221 211 110 000
Q ss_pred HHHHHHhh-----hhhh----h----hhCCCceEEEe-CCCCccccCCC----CCCCccCCCCCccCcHHHHHHHHhcCC
Q 014848 165 ERRAMNTF-----WPLL----M----RALPPDVIFIA-DPEGSIMGGGG----SIGPHYSGNDPREMRLVGALREVLAGG 226 (417)
Q Consensus 165 e~~~~~~~-----~~~l----~----~~Lp~~~~f~a-~~~G~iMg~~~----~~G~qf~~~~~~~m~l~~iIkkl~~G~ 226 (417)
.--++.-| -|+- + -.+|++..++| +++--+.++.. ..++||+++-..+.-..++.+.+.+|.
T Consensus 176 ~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~RD~~~~~ 255 (302)
T PRK05368 176 HHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFRDLGAGL 255 (302)
T ss_pred CChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 00122211 1110 0 12678888887 43333333322 227888887777666788888888885
No 117
>PLN02327 CTP synthase
Probab=36.07 E-value=40 Score=37.31 Aligned_cols=54 Identities=9% Similarity=-0.090 Sum_probs=39.5
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-ccCCccc-cccHHHHhHHHHhhhhcc
Q 014848 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (417)
Q Consensus 93 ~~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (417)
+-+++ .|++.++++.+ ...++ +.+ ++.++ ..+|.+| |+|+|.+...||--+++-
T Consensus 360 L~~~D-GIvvpGGfG~~---~~~G~-i~a-i~~are~~iP~LGIClGmQl~viefaRnvlG~ 415 (557)
T PLN02327 360 LKGAD-GILVPGGFGDR---GVEGK-ILA-AKYARENKVPYLGICLGMQIAVIEFARSVLGL 415 (557)
T ss_pred hccCC-EEEeCCCCCCc---ccccH-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence 33444 56777777666 44455 455 67775 6899999 999999999999987763
No 118
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=35.91 E-value=99 Score=28.82 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=60.7
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecC-----CCCCCCCCCcHHHHHHhCC-CCCCCCHHHHHHHHhhc-
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGA-----EWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDE- 368 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGn-----rs~ssKsGvTsaDvLeaLG-i~i~ls~eea~~~Le~~- 368 (417)
+.++|++|.|| ||.+..+.+.+|++=.--|+ -.....-|.-...+++.=. ++=.....-+...|++.
T Consensus 3 iiilG~pGaGK------~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 3 ILILGPPGAGK------STLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred EEEECCCCCCH------HHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 46789999998 58999999999888766443 2222333333334444444 22222334445555551
Q ss_pred -CCcEEEEeCCccCHHhhhhHHHhhhhCCC
Q 014848 369 -EIGFAYVSLREARPSLYSLIGLREHIKKR 397 (417)
Q Consensus 369 -~~GfaFL~a~~~~PaL~~l~~lRk~LG~R 397 (417)
..||-|..-|......+.+-..-+++|.+
T Consensus 77 ~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~ 106 (178)
T COG0563 77 CKAGFILDGFPRTLCQARALKRLLKELGVR 106 (178)
T ss_pred ccCeEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 02788999999999888888776776644
No 119
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=35.44 E-value=2.1e+02 Score=31.50 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=79.4
Q ss_pred CCCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhCCCce
Q 014848 105 TQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDV 184 (417)
Q Consensus 105 ~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~Lp~~~ 184 (417)
..++.|+.||+.-.++.|+ . |.++..|++||..|+-.|+ . |.+|...++.---.....++-+-
T Consensus 94 ~~G~~Lt~eE~~~ii~~i~---~------g~~~d~qiaAfL~Al~~kG---~-----t~~Ei~~lt~AM~~sg~~l~~~~ 156 (493)
T TIGR02645 94 IDGAKLDQHEIASIVGDIV---D------ERLSDVEISAFLTASAING---M-----TMDEIEALTIAMADTGEMLEWDR 156 (493)
T ss_pred HcCCCCCHHHHHHHHHHHH---c------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCCccCCC
Confidence 3678899999666555532 2 4556689999999999998 4 66665544332111112232111
Q ss_pred E-EE-eCCCCccccCCCCC---------CCc---cCCCCCcc-CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCc-cCCC
Q 014848 185 I-FI-ADPEGSIMGGGGSI---------GPH---YSGNDPRE-MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQ-VDNK 248 (417)
Q Consensus 185 ~-f~-a~~~G~iMg~~~~~---------G~q---f~~~~~~~-m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~-~~~~ 248 (417)
. ++ -|-.|=+-|-+-+. |+. ..+..... ---.+.++.+. .-+|+.+|++..++..= .. .-+-
T Consensus 157 ~~~vDkhgTGGd~gnk~ni~~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~~ve~~G-~~fl~G~ 234 (493)
T TIGR02645 157 EPIMDKHSIGGVPGNKTSLIVVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKRIVEKVG-GCLVWGG 234 (493)
T ss_pred CCeEEEeCCCCCCCCCEeHHHHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHHHHHHCC-EEEEECC
Confidence 1 11 11221111000000 222 11111111 12456777775 55999999999999741 00 0122
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 014848 249 APGVSESLLSAFLIGQRMNRETDRELKAYCLAFD 282 (417)
Q Consensus 249 ~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr 282 (417)
..++.|+-- .++.+|- -.|.|-+--++-.++
T Consensus 235 a~~l~PAdk--~i~~vR~-~l~vds~~li~aSIm 265 (493)
T TIGR02645 235 ALNLAPADD--VLIRVER-PLSIDPRAQMLASIM 265 (493)
T ss_pred CcccCHHHH--HHHHHHh-hcCCCcHHHHHHHHH
Confidence 334445443 5566665 445565555554444
No 120
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=34.67 E-value=19 Score=29.24 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=19.6
Q ss_pred cCCCCCHHHHHHHHHHhcCCcc--CCCCCCCCHHHHHHH
Q 014848 224 AGGHLGYEEVQGVLRDVLPLQV--DNKAPGVSESLLSAF 260 (417)
Q Consensus 224 ~G~~LT~eEA~~~m~~IL~~~~--~~~~Gevsd~QigAF 260 (417)
+|.+++++||++.+-.| |..+ .....+++++|+++|
T Consensus 28 ~g~~~~~d~ARE~vYGM-Py~eWK~~~Q~~At~eQ~aaf 65 (68)
T PF06844_consen 28 RGIEMDKDEAREIVYGM-PYDEWKAKHQTEATPEQLAAF 65 (68)
T ss_dssp CT----HHHHHHHHHSS--HHHHCHCH-----HHHHHHH
T ss_pred cCCcCCHHHHHHHHhCC-CHHHHHHHHCCCCCHHHHHHh
Confidence 67799999999998766 2333 333669999999998
No 121
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=32.15 E-value=78 Score=34.28 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=66.1
Q ss_pred hcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCceeeCCC
Q 014848 223 LAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEP 302 (417)
Q Consensus 223 ~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~LD~~Gtg 302 (417)
..|..++.++.-+++...+. ....+-.+ .+++=|+.--+|..+++++...++-+.+.-...+ + .+||-+
T Consensus 226 ~~G~~~~~~~~~~~~~~~~~----~~~~~~~~-fi~~rlI~~~~R~~~~~~~~~~~~~a~~~k~~~p-----~-~vvGfD 294 (479)
T TIGR01431 226 LEGTSHDEEDSVRIYKEVTE----KFMAEHPD-FIGSKLIYSPLRNKDKEELDNYIKVAMELKEKYP-----D-FVAGFD 294 (479)
T ss_pred cCCCCCCHHHHHHHHHHHHH----HHHHhCCC-CeEEEEEEEccCCCCHHHHHHHHHHHHHHHhhCC-----C-eEEEEe
Confidence 35667777776555555540 00001111 2344455555667777777766666654322221 1 133333
Q ss_pred CCCCC-CcccchHHHHHHH--hh-cCCcEEeecCCCCCCCCCCcHHHHHHh--C-------CCCCCCCHHHHHHHHhh
Q 014848 303 YDGNT-RFFRSTLFVAAVR--SC-YGESCLLHGAEWMPPKGGVTEEQMLKF--M-------GASTNLSVLQAKELLED 367 (417)
Q Consensus 303 yDG~~-rtfNiSt~aA~Vl--Aa-~Gv~V~kHGnrs~ssKsGvTsaDvLea--L-------Gi~i~ls~eea~~~Le~ 367 (417)
-.|.. ...+.+.++-.+. ++ .|+++..|.|..... +..+-..+.++ | |+.+..+|+-.+.+-++
T Consensus 295 L~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~-g~~~d~nl~dAIlLg~~RIGHG~~l~~~P~l~~~vke~ 371 (479)
T TIGR01431 295 LVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQ-GTTVDENLIDALLLNTTRIGHGFALVKHPLVLQMLKER 371 (479)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCC-CCCchhHHHHHHHcCCccccCcccccCCHHHHHHHHHh
Confidence 33333 1333454444432 33 899999999987532 11013444443 3 45565666555544444
No 122
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=32.00 E-value=1.6e+02 Score=29.96 Aligned_cols=106 Identities=16% Similarity=0.044 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhcCCCCCCCCCCceeeCCCCCCC---CCcccc---hH-
Q 014848 249 APGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN---TRFFRS---TL- 314 (417)
Q Consensus 249 ~Gevsd~QigAFL~ALR~KGET-------~eELaGfa~Amr~~~~~~~~~~~~~LD~~GtgyDG~---~rtfNi---St- 314 (417)
.|..| .|..+++.|....|.+ .+++....+++++.-..+...+ ..+.+-|.+..+. ...+++ ++
T Consensus 8 ~gskS-~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~-~~~~v~g~~~~~~~~~~~~~~~g~s~~~ 85 (408)
T cd01554 8 PGDKS-ISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD-GVITIQGVGMAGLKAPQNALNLGNSGTA 85 (408)
T ss_pred CCchH-HHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC-CEEEEEecCCCCCCCCCceEEccCccHH
Confidence 34444 3457777777777765 4678888888886432221111 1233323332111 111222 12
Q ss_pred --HHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 014848 315 --FVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (417)
Q Consensus 315 --~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~l 356 (417)
+++.+++..+..|...|...++...-...-|+|+.||+.+..
T Consensus 86 ~~~l~a~~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~ 129 (408)
T cd01554 86 IRLISGVLAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASISG 129 (408)
T ss_pred HHHHHHHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEE
Confidence 222333344568888998876654323368889999998753
No 123
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.19 E-value=42 Score=28.24 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=35.9
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ 355 (417)
+|+-|+=|+|.. -++=..-+---+...|.++....|.+..+. ....+.|+.+|+++.
T Consensus 3 ~D~dGvl~~g~~-~ipga~e~l~~L~~~g~~~~~lTNns~~s~--~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 3 FDLDGVLYNGNE-PIPGAVEALDALRERGKPVVFLTNNSSRSR--EEYAKKLKKLGIPVD 59 (101)
T ss_dssp EESTTTSEETTE-E-TTHHHHHHHHHHTTSEEEEEES-SSS-H--HHHHHHHHHTTTT--
T ss_pred EeCccEeEeCCC-cCcCHHHHHHHHHHcCCCEEEEeCCCCCCH--HHHHHHHHhcCcCCC
Confidence 466677777777 444333333445677999999999874442 336778899999864
No 124
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=29.15 E-value=80 Score=28.34 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=42.0
Q ss_pred cCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhh
Q 014848 212 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETD-RELKAYCLAFDDE 284 (417)
Q Consensus 212 ~m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~-eELaGfa~Amr~~ 284 (417)
.-.+.++++.+. .+.+|.+.|++++..++ ++.-++ ..++-.+-.+..|. +|+..+++.+.+.
T Consensus 41 ~~~l~~li~lv~-~g~It~~~ak~vl~~~~-------~~~~~~---~~ii~~~~l~~isd~~el~~~v~~vi~~ 103 (147)
T smart00845 41 PEHLAELLKLIE-DGTISGKIAKEVLEELL-------ESGKSP---EEIVEEKGLKQISDEGELEAIVDEVIAE 103 (147)
T ss_pred HHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-------HcCCCH---HHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 345777775554 45789999999999999 444443 34444455566776 4899988766644
No 125
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.05 E-value=8e+02 Score=27.57 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=69.3
Q ss_pred HHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCC----CCCCCCceeeCCCCCCCCCccc
Q 014848 236 VLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPYDGNTRFFR 311 (417)
Q Consensus 236 ~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~----~~~~~~LD~~GtgyDG~~rtfN 311 (417)
+++.++ +-.+++...-.++..+.-.. ..++.-..+........++. ......+-++|.+|.||+
T Consensus 297 l~~~L~-------~~Gvs~~la~~L~~~l~~~~-~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKT---- 364 (559)
T PRK12727 297 ALELMD-------DYGFDAGLTRDVAMQIPADT-ELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKT---- 364 (559)
T ss_pred HHHHHH-------HCCCCHHHHHHHHHhhhccc-chhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHH----
Confidence 446666 67888877777776554432 23333334443333333321 111224678899999986
Q ss_pred chHHHHHHHh---h--cCCcEEeecCCCCCCCCCCcHHHHH----HhCCCCCC--CCHHHHHHHHhhc-CCcEEEEeCCc
Q 014848 312 STLFVAAVRS---C--YGESCLLHGAEWMPPKGGVTEEQML----KFMGASTN--LSVLQAKELLEDE-EIGFAYVSLRE 379 (417)
Q Consensus 312 iSt~aA~VlA---a--~Gv~V~kHGnrs~ssKsGvTsaDvL----eaLGi~i~--ls~eea~~~Le~~-~~GfaFL~a~~ 379 (417)
++ ++.+++ . .|.+|..-.-+. ++....+.| +.+|+.+. .+..+..+.|++. ...+.+++.+-
T Consensus 365 -Tt-aakLAa~la~~~~gkkVaLIdtDt----yRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG 438 (559)
T PRK12727 365 -TT-IAKLAQRFAAQHAPRDVALVTTDT----QRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAG 438 (559)
T ss_pred -HH-HHHHHHHHHHhcCCCceEEEeccc----ccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCC
Confidence 33 333222 2 245666655443 222244445 34666543 3445555555431 15788899888
Q ss_pred cCHHhhh
Q 014848 380 ARPSLYS 386 (417)
Q Consensus 380 ~~PaL~~ 386 (417)
+.+....
T Consensus 439 ~s~~D~~ 445 (559)
T PRK12727 439 MGQRDRA 445 (559)
T ss_pred cchhhHH
Confidence 7765443
No 126
>PHA00438 hypothetical protein
Probab=26.52 E-value=98 Score=26.05 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 014848 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (417)
Q Consensus 227 ~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~ 283 (417)
+-++-+....++.+- ....|++.++.||.++.+--.|-||+.+.-+.+++
T Consensus 31 NasYl~~sG~i~~lR-------~~G~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~e 80 (81)
T PHA00438 31 NASYLEQSGEIRLLR-------QAGYSEAFIAGFLAGLQYASRTLDEMEARREQLRE 80 (81)
T ss_pred hHHHHHHhhhHHHHH-------HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346777777777777 77899999999999999999999999877666553
No 127
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=26.45 E-value=2.6e+02 Score=30.75 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=77.7
Q ss_pred cCCccc-cccHHHHhHHHHhhhhccccCCCCCcC---CHHHHHHHHhhhhhhh-----------hhCCCceEEEeCCCCc
Q 014848 129 DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQW---SEGERRAMNTFWPLLM-----------RALPPDVIFIADPEGS 193 (417)
Q Consensus 129 ~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~---s~~e~~~~~~~~~~l~-----------~~Lp~~~~f~a~~~G~ 193 (417)
.+|+|| |-|-|.|--.||+.+.|. .-=+.|+- .++.-..++-+-..++ +.+|..+.+++-..+.
T Consensus 88 ~vpvLGICYGmQ~i~~~~Gg~V~~~-~~RE~G~~eI~v~~~~~lF~~~~~~~~~~VlltHgdsl~~v~~g~kv~a~s~n~ 166 (552)
T KOG1622|consen 88 GVPVLGICYGMQLINKLNGGTVVKG-MVREDGEDEIEVDDSVDLFSGLHKTEFMTVLLTHGDSLSKVPEGFKVVAFSGNK 166 (552)
T ss_pred CCcceeehhHHHHHHHHhCCccccc-cccCCCCceEEcCchhhhhhhhcccceeeeeeccccchhhccccceeEEeecCc
Confidence 599999 999999999999999987 33333332 2332222222222222 5788888888866666
Q ss_pred -cccCCCCC----CCccCCCCCcc---C-cHHHHHHHHhcCC-CCC-----HHHHHHHHHHhcCCcc-CCCCCCCCHHHH
Q 014848 194 -IMGGGGSI----GPHYSGNDPRE---M-RLVGALREVLAGG-HLG-----YEEVQGVLRDVLPLQV-DNKAPGVSESLL 257 (417)
Q Consensus 194 -iMg~~~~~----G~qf~~~~~~~---m-~l~~iIkkl~~G~-~LT-----~eEA~~~m~~IL~~~~-~~~~Gevsd~Qi 257 (417)
+-|+-+.. |+||+|.=.-. + .++..+-++-.+. +.| .+++.+.-+.+=+.+. ---+|.++..-.
T Consensus 167 ~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~I~~i~k~vG~~~Vl~~vSGgvdStV~ 246 (552)
T KOG1622|consen 167 PVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEECINEIRKWVGDYKVLVAVSGGVDSTVC 246 (552)
T ss_pred ceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHHHHHHHHHHhcccceEEEecCCchHHHH
Confidence 44554444 99998843222 2 2455554444442 444 3444443333321111 112788888777
Q ss_pred HHHHHHH
Q 014848 258 SAFLIGQ 264 (417)
Q Consensus 258 gAFL~AL 264 (417)
+++|...
T Consensus 247 a~Ll~~a 253 (552)
T KOG1622|consen 247 AALLRRA 253 (552)
T ss_pred HHHHHHh
Confidence 7777543
No 128
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=26.27 E-value=3.8e+02 Score=22.90 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 014848 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (417)
Q Consensus 215 l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~ 283 (417)
...++..+...+-+|.||+..+ - +..-+..++=++|-.++.|||+..|. |..++++
T Consensus 17 v~plLD~Ll~n~~it~E~y~~V----~-------a~~T~qdkmRkLld~v~akG~~~k~~--F~~iL~e 72 (85)
T cd08324 17 TQCLVDNLLKNDYFSTEDAEIV----C-------ACPTQPDKVRKILDLVQSKGEEVSEY--FLYLLQQ 72 (85)
T ss_pred hHHHHHHHhccCCccHHHHHHH----H-------hCCCCHHHHHHHHHHHHhcCchHHHH--HHHHHHH
Confidence 4567888888899999998654 3 56778899999999999999998775 5555654
No 129
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=26.03 E-value=46 Score=33.62 Aligned_cols=46 Identities=20% Similarity=0.085 Sum_probs=33.4
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHh
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKF 349 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLea 349 (417)
+-..|.||-||+. ++.+.|.-+|..|.+|+.-.-+...+ ..|+|..
T Consensus 4 ~~~~GKGGVGKTT---~aaA~A~~~A~~G~rtLlvS~Dpa~~-----L~d~l~~ 49 (305)
T PF02374_consen 4 LFFGGKGGVGKTT---VAAALALALARRGKRTLLVSTDPAHS-----LSDVLGQ 49 (305)
T ss_dssp EEEEESTTSSHHH---HHHHHHHHHHHTTS-EEEEESSTTTH-----HHHHHTS
T ss_pred EEEecCCCCCcHH---HHHHHHHHHhhCCCCeeEeecCCCcc-----HHHHhCC
Confidence 4567999999982 55666777899999999997765433 6677654
No 130
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=25.87 E-value=77 Score=34.12 Aligned_cols=215 Identities=12% Similarity=0.090 Sum_probs=105.2
Q ss_pred CCCCCChhhhhhhHHHHHHHhhccCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhCCC-ce
Q 014848 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPP-DV 184 (417)
Q Consensus 106 ~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~Lp~-~~ 184 (417)
.++.|++||+.-+++.|+ . |.++..|++||.-|+.+|+ . |.+|...++.--......++. ++
T Consensus 12 ~g~~Lt~eE~~~~~~~i~---~------g~~~d~qiaAfL~Al~~kG---~-----t~~Ei~~lt~aM~~sg~~~~~~~~ 74 (434)
T PRK06078 12 DGKELTTEEINFFIEGYT---N------GTIPDYQMSALAMAIYFKD---M-----TDRERADLTMAMVNSGDTIDLSAI 74 (434)
T ss_pred cCCCCCHHHHHHHHHHHH---c------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcccCccc
Confidence 578899999776666632 2 4555589999999999999 5 767765554432221123321 11
Q ss_pred E--EE-eCCCCccccCCCCC-----------CCc---cCCCCCcc-CcHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCcc
Q 014848 185 I--FI-ADPEGSIMGGGGSI-----------GPH---YSGNDPRE-MRLVGALREV-LAGGHLGYEEVQGVLRDVLPLQV 245 (417)
Q Consensus 185 ~--f~-a~~~G~iMg~~~~~-----------G~q---f~~~~~~~-m~l~~iIkkl-~~G~~LT~eEA~~~m~~IL~~~~ 245 (417)
. ++ -|..|= .+.++ |+. ..+.+... .--.+.|+.+ +=.-+|+.+|++..++.+= +..
T Consensus 75 ~~~~vD~~gTGG---dG~kt~ni~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~~~~~l~~~G-~~f 150 (434)
T PRK06078 75 EGIKVDKHSTGG---VGDTTTLVLAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQEDFIKLVNENK-VAV 150 (434)
T ss_pred CCCeeEecCCCC---CCCCchHHHHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHHHHHHHHHhC-cEE
Confidence 1 12 122221 12222 222 11111111 1145667777 6667999999999998741 111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHhhcCCCCCCCCCCceeeCCCCCCCC-CcccchHHHHHHHhh
Q 014848 246 DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA--FDDELGPPPVADVKSLTHYGEPYDGNT-RFFRSTLFVAAVRSC 322 (417)
Q Consensus 246 ~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~A--mr~~~~~~~~~~~~~LD~~GtgyDG~~-rtfNiSt~aA~VlAa 322 (417)
-..+....|+-. .+.++|----|.+-+ -++-+ |.++... -++.-.+|+ ..|+|.. ++....-..|-++..
T Consensus 151 l~~a~~~~PAdk--~v~~lR~v~~t~n~l-PLi~~SImSKKlAa--g~~~~vldV--~~G~gAfm~~~~~a~~lA~~l~~ 223 (434)
T PRK06078 151 IGQSGNLTPADK--KLYALRDVTATVNSI-PLIASSIMSKKIAA--GADAIVLDV--KTGAGAFMKTVEDAEELAHAMVR 223 (434)
T ss_pred EccCCCcChhhh--hhHHHhccccccChH-HhhhhHhhhhhhhc--CCCeEEEee--ecCCCCCCCCHHHHHHHHHHHHH
Confidence 112244554332 344444433354444 44422 3222211 011112444 2222322 244444444544444
Q ss_pred c----CCc---EEeecCCCCCCCCCCcHHHHHHh
Q 014848 323 Y----GES---CLLHGAEWMPPKGGVTEEQMLKF 349 (417)
Q Consensus 323 ~----Gv~---V~kHGnrs~ssKsGvTsaDvLea 349 (417)
. |.+ ++..|+..++...| +..++.|+
T Consensus 224 lG~~~g~~~~a~lt~~~~plG~~iG-na~Ev~Ea 256 (434)
T PRK06078 224 IGNNVGRNTMAVISDMSQPLGRAIG-NALEVLEA 256 (434)
T ss_pred HHHhcCCeEEEEECCCCccccccCC-CHHHHHHH
Confidence 3 433 45566666666433 56666655
No 131
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=25.11 E-value=9.2e+02 Score=26.53 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=58.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCce
Q 014848 218 ALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLT 297 (417)
Q Consensus 218 iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~LD 297 (417)
++.+..--.+++.+.|+.+++.+-..-.+......+.+++-+.+.....+..+.++ +...+..+...... .+ ..+-
T Consensus 184 iLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~~~~-a~~y~la~~i~~~k-~p--~vil 259 (475)
T PRK12337 184 ILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAGEEV-ARRYRLLRSIRRPP-RP--LHVL 259 (475)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhccC-CC--eEEE
Confidence 55565666788899999988887510001123344666776666666655444322 22222222111111 11 1367
Q ss_pred eeCCCCCCCCCcccchHHHHHHHhhcCCcEE
Q 014848 298 HYGEPYDGNTRFFRSTLFVAAVRSCYGESCL 328 (417)
Q Consensus 298 ~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~ 328 (417)
++|.+|.|| ||+++.++...|...+
T Consensus 260 ~~G~~G~GK------St~a~~LA~~lg~~~i 284 (475)
T PRK12337 260 IGGVSGVGK------SVLASALAYRLGITRI 284 (475)
T ss_pred EECCCCCCH------HHHHHHHHHHcCCcEE
Confidence 889999988 5788888899998754
No 132
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=24.66 E-value=2.2e+02 Score=28.92 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhcCCCCCCCCCCceeeCCCCC-----CCC-CcccchH-HHHHHHh
Q 014848 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GNT-RFFRSTL-FVAAVRS 321 (417)
Q Consensus 256 QigAFL~ALR~KGET-------~eELaGfa~Amr~~~~~~~~~~~~~LD~~GtgyD-----G~~-rtfNiSt-~aA~VlA 321 (417)
...++++|...+|+| .+++..+.++|++.-..+.....+.+.+-|.+.. +.. .++-.+. +++.+++
T Consensus 14 ~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~~~~~I~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~ 93 (400)
T cd01555 14 ALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENTLVIDASNINSTEAPYELVRKMRASILVLGPLLA 93 (400)
T ss_pred HHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhc
Confidence 456777777778875 5678899999985432221111012333232211 100 0111222 2333333
Q ss_pred h-cCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 014848 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (417)
Q Consensus 322 a-~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ 355 (417)
. .++.+..+|+..+....-....++|+.+|+++.
T Consensus 94 ~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~ 128 (400)
T cd01555 94 RFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIE 128 (400)
T ss_pred CCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEE
Confidence 2 347888888765543322336799999998864
No 133
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=24.22 E-value=4.8e+02 Score=22.77 Aligned_cols=62 Identities=19% Similarity=0.080 Sum_probs=51.8
Q ss_pred cCcHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 014848 212 EMRLVGALREVLAGG--HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFD 282 (417)
Q Consensus 212 ~m~l~~iIkkl~~G~--~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr 282 (417)
...+.++-++++.+. .+|..|.++..-.++ ..+-||.. .+|-.+..||-|..|+..+.+.|-
T Consensus 22 ~~gWr~LAe~lg~~~~fr~S~~el~~cslkvl-------~p~gSPsk--~LL~~~~~rg~Tv~~Ll~~L~~Mg 85 (97)
T cd08783 22 GKGWRKLAELAGSRGRFRLSCLDLEQCSLKVL-------EPEGSPSR--SLLKLLGERGCTVTELSEFLQAME 85 (97)
T ss_pred cCCHHHHHHHHccCCccccCHHHHHHHHHHHh-------cCCCCchH--HHHHHHHHcCCcHHHHHHHHHHhh
Confidence 366888888888776 689999999999999 66667654 578889999999999999998885
No 134
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=23.27 E-value=1.3e+02 Score=24.26 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHH
Q 014848 218 ALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQR---MNRETDRELKAYCLAF 281 (417)
Q Consensus 218 iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR---~KGET~eELaGfa~Am 281 (417)
++++++---+|+.+++-++|... .=++|..|++|||.--- ++--+.+++..|...+
T Consensus 4 ILrkLRyal~l~d~~m~~if~l~--------~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 4 ILRKLRYALDLKDDDMIEIFALA--------GFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred HHHHHHHHHcCChHHHHHHHHHc--------CCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 56666666667777777776665 35677777777764311 1112445555555444
No 135
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=23.25 E-value=53 Score=35.02 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=56.1
Q ss_pred hcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCceeeCCC
Q 014848 223 LAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEP 302 (417)
Q Consensus 223 ~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~Amr~~~~~~~~~~~~~LD~~Gtg 302 (417)
.+|. +|+++.-+.+..-+ +...-+.. |++.|+-=-+|++..|.....+....+.-...+. .+--+|..|..
T Consensus 150 ~~G~-~t~e~~v~~~~~~~----e~~~~~fp---I~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~-~VvGidL~G~e 220 (399)
T KOG1097|consen 150 ADGD-ITPEDVVAIVIAAL----EKAKRDFP---IKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPN-FVVGIDLVGQE 220 (399)
T ss_pred cCCC-CCHHHHHHHHHHHH----HHHHHhCC---CcceEEEeeccCCChHHHHHHHHHHHHHHHhCCC-eEEEEecCCCC
Confidence 4566 77776666655555 11112223 8888888889999988877766665542111111 01124554444
Q ss_pred -CCCCCCcccchHHHHHH--HhhcCCcEEeecCCCC
Q 014848 303 -YDGNTRFFRSTLFVAAV--RSCYGESCLLHGAEWM 335 (417)
Q Consensus 303 -yDG~~rtfNiSt~aA~V--lAa~Gv~V~kHGnrs~ 335 (417)
.+ .+++.++-.+ +++.|++...|.+..-
T Consensus 221 ~~~-----~p~~~f~~vl~~~~~~gi~~t~HaGE~~ 251 (399)
T KOG1097|consen 221 DLG-----GPLSLFLEVLAKAPAKGIHLTFHAGETN 251 (399)
T ss_pred CCC-----CChhhhHHHHHhhhhcCCcEEEEccccC
Confidence 22 2234443333 3348999999999884
No 136
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.23 E-value=69 Score=27.77 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=28.5
Q ss_pred cCCCCCHHHHHHHHHHhcCCcc--CCCCCCCCHHHHHHHHH
Q 014848 224 AGGHLGYEEVQGVLRDVLPLQV--DNKAPGVSESLLSAFLI 262 (417)
Q Consensus 224 ~G~~LT~eEA~~~m~~IL~~~~--~~~~Gevsd~QigAFL~ 262 (417)
.|-+||.+++++.+-.|- -.+ ....+++||+|.+||=.
T Consensus 59 ~gv~lskd~aRE~VyGMp-y~eWka~~Q~eAspeq~aafe~ 98 (104)
T COG3492 59 QGVDLSKDQAREIVYGMP-YAEWKAQHQSEASPEQKAAFEA 98 (104)
T ss_pred cCCCccHHHHHHHHhCCC-HHHHHHhcCCCCCHHHHHHHHh
Confidence 466999999999987663 233 33477999999999843
No 137
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=23.01 E-value=1.2e+02 Score=31.10 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=54.9
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCCCCCCc-eeeCCCCCCCCCcccchHHHHHHHhhcCCcEEeecCCCCCCCCCC-c--
Q 014848 267 NRETDRELKAYCLAFDDELGPPPVADVKSL-THYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV-T-- 342 (417)
Q Consensus 267 KGET~eELaGfa~Amr~~~~~~~~~~~~~L-D~~GtgyDG~~rtfNiSt~aA~VlAa~Gv~V~kHGnrs~ssKsGv-T-- 342 (417)
=|.|.+||..+++.=.. ..+ ....++ ..+..+.+|.. .-...++++..+|++|.--|+=+==++.+. |
T Consensus 60 vGl~~~ele~la~~~~~-~~K---~s~RDl~~~~a~~~~GaT----TVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~D 131 (293)
T PF04227_consen 60 VGLSEEELERLADAGKG-VIK---VSRRDLAYALAKGLSGAT----TVSATMILAHLAGIKVFATGGIGGVHRGAEETFD 131 (293)
T ss_dssp ES--HHHHHHHHHH-----EE---E-GGGHHHHHHHT--EEE-----HHHHHHHHHHTT--EEE-S-B--B-TT---SS-
T ss_pred EcCCHHHHHHHHHhccC-Cee---ecHhhHHHHHhCCCccHh----HHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcch
Confidence 37789999998875221 111 122344 23345667665 233445677889999998887442232211 1
Q ss_pred -HHHHHHh---------CCCCCCCCHHHHHHHHhhcCCcEEEEe-CCccCHHhh
Q 014848 343 -EEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYVS-LREARPSLY 385 (417)
Q Consensus 343 -saDvLea---------LGi~i~ls~eea~~~Le~~~~GfaFL~-a~~~~PaL~ 385 (417)
|+|+-|- -|++.-++.....+.||. .|+..+. .....|+++
T Consensus 132 iSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LET--~GV~Vvgy~t~~fPaFy 183 (293)
T PF04227_consen 132 ISADLTELARTPVAVVCAGAKSILDIPKTLEYLET--QGVPVVGYGTDEFPAFY 183 (293)
T ss_dssp B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHHH--TT--EEEES-SB--BTT
T ss_pred hhhHHHHHhcCCceEEEccCcchhchHHHHHHhhc--CCeEEEEecCCCCCeee
Confidence 6787775 478888999999999999 8887764 445777654
No 138
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=22.57 E-value=1.1e+02 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHH
Q 014848 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 261 (417)
Q Consensus 227 ~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL 261 (417)
.++.||+++.+-.+- ...+++.|+|..|
T Consensus 27 ~~~~~eVe~~I~kla-------kkG~tpSqIG~iL 54 (60)
T PF08069_consen 27 KYSPEEVEELIVKLA-------KKGLTPSQIGVIL 54 (60)
T ss_dssp -S-HHHHHHHHHHHC-------CTTHCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-------HcCCCHHHhhhhh
Confidence 478899999999998 8899999999876
No 139
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.16 E-value=1.5e+02 Score=25.54 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=34.6
Q ss_pred CccCCCCCccCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC
Q 014848 203 PHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR 268 (417)
Q Consensus 203 ~qf~~~~~~~m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~~~~~Gevsd~QigAFL~ALR~KG 268 (417)
..|.||.|.-.++ |+.- =|.|||-++++.+- +.|++++....++=.-++-||
T Consensus 28 ~~~~gy~PtV~D~---L~rC-----dT~EEAlEii~yle------KrGEi~~E~A~~L~~~~~~kg 79 (98)
T COG4003 28 IDFSGYNPTVIDF---LRRC-----DTEEEALEIINYLE------KRGEITPEMAKALRVTLVHKG 79 (98)
T ss_pred CCcCCCCchHHHH---HHHh-----CcHHHHHHHHHHHH------HhCCCCHHHHHHHHhhHHHHH
Confidence 3466766654433 3321 28999999999997 589999876666555555544
No 140
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=21.76 E-value=3.3e+02 Score=27.54 Aligned_cols=107 Identities=14% Similarity=0.025 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhcCCCCCCCCCCceeeCCCCCCC--CCcccc---hHHH
Q 014848 249 APGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN--TRFFRS---TLFV 316 (417)
Q Consensus 249 ~Gevsd~QigAFL~ALR~KGET-------~eELaGfa~Amr~~~~~~~~~~~~~LD~~GtgyDG~--~rtfNi---St~a 316 (417)
.|.-+.++.+-++.++ .+|+| .+++..+.+++++.-..+...+ ..+.+-|.+..+. +..++. ++.+
T Consensus 8 ~~sKs~~~r~l~~a~l-~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~i~~~~s~~s~ 85 (409)
T cd01556 8 PGSKSISHRALLLAAL-AEGESRIENLLDSDDTLATLEALRALGAKIEEEG-GTVEIVGGGGLGLPPEAVLDCGNSGTTM 85 (409)
T ss_pred CCchHHHHHHHHHHHh-cCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEEcCCCCCCCCCceEEcCCchHHH
Confidence 3445556666666665 67776 5888899999986433222111 2344434322221 112222 1222
Q ss_pred ---HHHHhhcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCCCCC
Q 014848 317 ---AAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLS 357 (417)
Q Consensus 317 ---A~VlAa~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ls 357 (417)
..+++.++.++..+|+..+.+..=....++|+.||+++...
T Consensus 86 ~~l~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~ 129 (409)
T cd01556 86 RLLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGR 129 (409)
T ss_pred HHHHHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEEeC
Confidence 22223345688888874443221123789999999987643
No 141
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=21.04 E-value=6.5e+02 Score=26.33 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=32.9
Q ss_pred CceeeCCCCCCCCCcccchHHHHH--HHhhcCCcEEeecCCCCCCCCCCc
Q 014848 295 SLTHYGEPYDGNTRFFRSTLFVAA--VRSCYGESCLLHGAEWMPPKGGVT 342 (417)
Q Consensus 295 ~LD~~GtgyDG~~rtfNiSt~aA~--VlAa~Gv~V~kHGnrs~ssKsGvT 342 (417)
.+-+.|+||.||. |++-++ -+...|.+|+.--.+..|+++|++
T Consensus 53 viGITG~PGaGKS-----Tli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs 97 (323)
T COG1703 53 VIGITGVPGAGKS-----TLIEALGRELRERGHRVAVLAVDPSSPFTGGS 97 (323)
T ss_pred EEEecCCCCCchH-----HHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc
Confidence 4788899999997 444444 347889999998888877777754
No 142
>PRK05362 phosphopentomutase; Provisional
Probab=21.01 E-value=1.7e+02 Score=31.07 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhcCCCC--CCCCCCceeeCCCCC----CCCCcccchH---HHHHHHhhcCCcEEeecC
Q 014848 262 IGQRMNRETDRELKAYCLAFDDELGPPP--VADVKSLTHYGEPYD----GNTRFFRSTL---FVAAVRSCYGESCLLHGA 332 (417)
Q Consensus 262 ~ALR~KGET~eELaGfa~Amr~~~~~~~--~~~~~~LD~~GtgyD----G~~rtfNiSt---~aA~VlAa~Gv~V~kHGn 332 (417)
+|-...-...|||..+|+..|+....-+ +.-+-..-.+|.+++ .++|.|-+.+ .+-=.++.+|++|+.-|-
T Consensus 163 iaahe~~~~~e~ly~~c~~~R~~~~~~~~~v~RVIarpf~G~~~~f~rt~~r~d~~~~p~~~Tl~d~L~~aG~~v~~VGk 242 (394)
T PRK05362 163 IAAHEEVFGLEELYRICEIAREILLDRPYNVGRVIARPFVGEPGNFTRTGNRHDYALKPPAPTVLDKLKEAGGEVIAVGK 242 (394)
T ss_pred EEecccccCHHHHHHHHHHHHHHhccCcCceeeEEeccccCCCCCceeccccCCcCcCCCCCCHHHHHHHCCCeEEEEEe
Confidence 3344555678999999999998753321 111101123444332 1122333333 444466889999997775
Q ss_pred CCCCCCCCCcHHHHHHhCCCC----CCC---CHHHHHHHHh-hcCCcEEEEeCCccC
Q 014848 333 EWMPPKGGVTEEQMLKFMGAS----TNL---SVLQAKELLE-DEEIGFAYVSLREAR 381 (417)
Q Consensus 333 rs~ssKsGvTsaDvLeaLGi~----i~l---s~eea~~~Le-~~~~GfaFL~a~~~~ 381 (417)
- .|++..-|+. ... -.+.+.+.|+ +.+.+|+|++..++-
T Consensus 243 i----------~DiFa~~G~t~~~~~~~~~~~~~~ale~L~~~~~~~fvfvn~~~~D 289 (394)
T PRK05362 243 I----------ADIFAGQGITEKVKTKSNMDGMDATIEEMKEAGDNGLVFTNLVDFD 289 (394)
T ss_pred h----------hhcccCCCcccccCCCCHHHHHHHHHHHHHhCCCCcEEEEecccCc
Confidence 2 2444444432 111 2245667776 323688888776543
No 143
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=20.81 E-value=2.7e+02 Score=28.63 Aligned_cols=106 Identities=8% Similarity=0.038 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhcCCCCCCCCCCceeeCCCCCCCCC------cccchH-
Q 014848 249 APGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTR------FFRSTL- 314 (417)
Q Consensus 249 ~Gevsd~QigAFL~ALR~KGET-------~eELaGfa~Amr~~~~~~~~~~~~~LD~~GtgyDG~~r------tfNiSt- 314 (417)
.|.-|-.+ .+++.|...+|.| .+++....+++++.-..+...+-..+.+-|.+..+... ..+.+.
T Consensus 19 pgsKS~~~-r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~~~~~i~g~~~~~~~~~~~~~~~s~~s~~ 97 (417)
T PRK09369 19 SGAKNAAL-PILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGNGTVTIDASNINNTEAPYELVKKMRASIL 97 (417)
T ss_pred cCcHHHHH-HHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCCCEEEEECCCCCCCcCCHHHHhhhhhHHH
Confidence 34444433 5566666667665 67888888898864322211110123332322111100 011111
Q ss_pred HHHHHHhhc-CCcEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 014848 315 FVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (417)
Q Consensus 315 ~aA~VlAa~-Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i~ 355 (417)
+++.+++.. +.++...|+..+...--....+.|+.||+++.
T Consensus 98 ~l~~~~~~~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 139 (417)
T PRK09369 98 VLGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIE 139 (417)
T ss_pred HHHHHhccCCceEEEecCCCccCCCchHHHHHHHHHCCCEEE
Confidence 333344443 45899999877766544457788999998863
No 144
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=20.74 E-value=2.8e+02 Score=28.36 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhcCCCCCCCCCCceeeCCCCC-----CCC-CcccchHHH-HHHHh
Q 014848 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GNT-RFFRSTLFV-AAVRS 321 (417)
Q Consensus 256 QigAFL~ALR~KGET-------~eELaGfa~Amr~~~~~~~~~~~~~LD~~GtgyD-----G~~-rtfNiSt~a-A~VlA 321 (417)
+..+++++...+|.+ .+++....+++++.-..+...+ ..+.+-|.+.. +.. .+.+.++.+ +.+++
T Consensus 25 ~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~~s~~~ra~~~~~~~~la 103 (416)
T TIGR01072 25 ALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN-NTLEINTPNINSTEAPYELVRKMRASILVLGPLLA 103 (416)
T ss_pred HHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC-CEEEEECCCCCCCCCCHHHHhhhhHHHHHHHHHhc
Confidence 445555555556653 5668888888886432221111 12444333321 100 012222222 22333
Q ss_pred h-cCCcEEeecCCCCCCCCCCcHHHHHHhCCCCC
Q 014848 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGAST 354 (417)
Q Consensus 322 a-~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i 354 (417)
. .++++..+|+..+.........++|+.+|+++
T Consensus 104 ~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v 137 (416)
T TIGR01072 104 RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEI 137 (416)
T ss_pred cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEE
Confidence 2 24689999877666544444678999999876
No 145
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=20.68 E-value=2.7e+02 Score=28.38 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=31.2
Q ss_pred ceeeCCCCCCCCCcccchHHHHHHHh----hcCCcEEeecCCCCCCCCCCcHHHHHHhCCCCC
Q 014848 296 LTHYGEPYDGNTRFFRSTLFVAAVRS----CYGESCLLHGAEWMPPKGGVTEEQMLKFMGAST 354 (417)
Q Consensus 296 LD~~GtgyDG~~rtfNiSt~aA~VlA----a~Gv~V~kHGnrs~ssKsGvTsaDvLeaLGi~i 354 (417)
..++|+++.||+ +|-...++...+. ..|.+|+--..+.--+... ..++.+.+|++.
T Consensus 99 teI~G~~GsGKT-ql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eR--i~~~a~~~g~d~ 158 (313)
T TIGR02238 99 TEVFGEFRCGKT-QLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDR--IRAIAERFGVDP 158 (313)
T ss_pred EEEECCCCCCcC-HHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHH--HHHHHHHcCCCh
Confidence 468999999998 5544444333222 2345666555444212233 456667777653
No 146
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=20.20 E-value=1.2e+02 Score=33.42 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=96.3
Q ss_pred HHHHHHhCCCcccccCcccccccccCCCCCCchhhhhhccceeeCCCCCCCCChhhhhhhHHHHHHHhhccCCccccccH
Q 014848 59 SALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSK 138 (417)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gp~~~~Pl~~~~a~~~~~~~l~~~~~~l~~~~~~~~ 138 (417)
....++|++++++..+-..+ ++|- -+|.--+ ...++.|+.||+.-+++.|+ . |.++.
T Consensus 63 ~~~~~~l~~~~g~~v~v~~a--------~~~~--s~~~I~k----k~~G~~Ls~eEi~~ii~~i~---~------g~~~d 119 (500)
T TIGR03327 63 HEVLEELGISEGEVVEVTPA--------EKPE--SVEYIKK----KMDGEKLTKDEIRAIVADIV---D------DKLSD 119 (500)
T ss_pred HHHHHHcCCCCCCEEEEecC--------CCch--HHHHHHH----HHcCCCCCHHHHHHHHHHHH---c------CCCCH
Confidence 34567888887776543221 2221 1122222 23577899999665555532 2 45556
Q ss_pred HHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhhhhhhC--CCceEEEeCCCCccccC-CCCC-----------CCc
Q 014848 139 AQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--PPDVIFIADPEGSIMGG-GGSI-----------GPH 204 (417)
Q Consensus 139 ~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~~~L--p~~~~f~a~~~G~iMg~-~~~~-----------G~q 204 (417)
.|++||.-|...|+ - |.+|..+++.--..-...+ +....+=-|..| |. ++++ |+.
T Consensus 120 ~QiaAfL~Al~~kG---~-----t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTG---Gd~gnk~nl~~apIVAA~Gv~ 188 (500)
T TIGR03327 120 IEISAFVTASYING---M-----DMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIG---GVPGNKISLLVVPIVAAAGLT 188 (500)
T ss_pred HHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCC---CCCCCCEEHHHHHHHHhCCCC
Confidence 89999999999999 4 6666554443211111223 211111112222 12 1111 111
Q ss_pred c---CCCCCcc-CcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcc-CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014848 205 Y---SGNDPRE-MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQV-DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCL 279 (417)
Q Consensus 205 f---~~~~~~~-m~l~~iIkkl~~G~~LT~eEA~~~m~~IL~~~~-~~~~Gevsd~QigAFL~ALR~KGET~eELaGfa~ 279 (417)
- .+..... ---.+.++.+. .-+|+.+|++..++..= +.. -+-..+..|+- ..+.++|- -.|.|-+-=++.
T Consensus 189 VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~~v~~~G-~~fl~Gqa~~l~PAd--k~l~alrd-t~tvds~~li~a 263 (500)
T TIGR03327 189 IPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKRIVEKTG-GCLVWGGATNLAPAD--DKIIKVER-PLSIDPRGQMLA 263 (500)
T ss_pred eeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHHHHHHCC-EEEEECCccccCHHH--HHHHHhcc-ccCCCcHHHHHH
Confidence 0 1111111 11445677773 45999999999998741 000 11223444433 35677776 668888776666
Q ss_pred HHHhh
Q 014848 280 AFDDE 284 (417)
Q Consensus 280 Amr~~ 284 (417)
.++++
T Consensus 264 SImSK 268 (500)
T TIGR03327 264 SVMAK 268 (500)
T ss_pred HHHHH
Confidence 66543
Done!