Query 014851
Match_columns 417
No_of_seqs 153 out of 1285
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 3E-29 6.4E-34 213.3 3.4 110 79-196 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 7E-25 1.5E-29 186.9 14.7 115 33-164 2-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.3E-23 2.8E-28 178.5 14.3 113 33-163 2-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.7 1.7E-16 3.7E-21 134.0 9.8 103 222-331 1-108 (110)
5 PF08276 PAN_2: PAN-like domai 99.6 3.6E-15 7.8E-20 114.4 6.2 60 326-388 4-65 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.4 2.4E-13 5.1E-18 108.3 6.9 80 319-403 2-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.4 5.4E-13 1.2E-17 106.1 5.8 67 327-402 9-80 (80)
8 smart00108 B_lectin Bulb-type 98.7 4.9E-08 1.1E-12 82.7 9.0 89 97-225 23-112 (114)
9 cd00028 B_lectin Bulb-type man 98.6 1.2E-07 2.6E-12 80.6 8.7 89 98-226 24-114 (116)
10 smart00473 PAN_AP divergent su 98.5 3E-07 6.5E-12 71.4 7.5 71 327-401 4-77 (78)
11 PF01453 B_lectin: D-mannose b 98.4 1.7E-06 3.6E-11 73.6 10.4 100 39-165 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.5 0.00013 2.9E-09 56.7 4.2 49 333-385 10-58 (73)
13 PF00024 PAN_1: PAN domain Thi 93.1 0.11 2.3E-06 39.9 3.5 56 329-388 4-60 (79)
14 smart00223 APPLE APPLE domain. 87.9 0.96 2.1E-05 35.8 4.5 36 349-384 20-57 (79)
15 PF14295 PAN_4: PAN domain; PD 84.4 0.82 1.8E-05 32.0 2.3 23 350-372 15-37 (51)
16 smart00605 CW CW domain. 82.2 4.9 0.00011 32.5 6.3 55 349-405 20-77 (94)
17 cd01099 PAN_AP_HGF Subfamily o 79.2 5 0.00011 31.5 5.3 36 350-386 24-61 (80)
18 PF08277 PAN_3: PAN-like domai 78.9 6 0.00013 29.9 5.5 34 349-385 18-51 (71)
19 PF01436 NHL: NHL repeat; Int 56.0 19 0.00042 22.2 3.3 22 96-117 5-26 (28)
20 PRK11138 outer membrane biogen 46.3 66 0.0014 32.7 7.3 55 101-160 127-186 (394)
21 TIGR03300 assembly_YfgL outer 42.0 92 0.002 31.2 7.6 57 98-159 69-130 (377)
22 PF13360 PQQ_2: PQQ-like domai 41.7 50 0.0011 30.2 5.2 53 103-160 2-62 (238)
23 PF13360 PQQ_2: PQQ-like domai 39.5 1.5E+02 0.0032 27.0 8.0 77 79-160 56-148 (238)
24 KOG4649 PQQ (pyrrolo-quinoline 38.6 70 0.0015 31.4 5.6 42 79-121 169-215 (354)
25 PRK11138 outer membrane biogen 37.1 4.5E+02 0.0098 26.5 17.0 76 79-159 140-230 (394)
26 smart00765 MANEC The MANEC dom 25.4 1.1E+02 0.0024 25.0 3.9 36 349-384 36-74 (93)
27 cd00216 PQQ_DH Dehydrogenases 23.7 2.2E+02 0.0048 30.0 7.0 76 79-160 39-136 (488)
28 PF12273 RCR: Chitin synthesis 22.4 48 0.001 28.4 1.4 39 2-41 1-39 (130)
29 PF07502 MANEC: MANEC domain; 22.1 1.5E+02 0.0032 24.1 4.1 36 349-384 34-73 (92)
30 cd05845 Ig2_L1-CAM_like Second 21.4 1.4E+02 0.0031 24.2 3.9 31 79-110 34-64 (95)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.95 E-value=3e-29 Score=213.27 Aligned_cols=110 Identities=41% Similarity=0.609 Sum_probs=79.3
Q ss_pred CccEEeeCCCCCCCCC--CceEEEecCCCEEEEecCCCeEEEec-ccccccccCCceEEEEecCCCEEEEeccccCCCCc
Q 014851 79 FYPLWVANPNNPVPDS--SGVLRMDTDGILKFAYKGGSRIAVSS-NRAKKANSETNITATLLDSGNLLVRQIGADGIAGP 155 (417)
Q Consensus 79 ~~~vW~Anr~~p~~~~--~~~l~l~~dG~Lvl~d~~~~~vW~ss-~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~ 155 (417)
+++||+|||++|+... ..+|.|+.||+|+|++..++.+| ++ ++.+++ ..+..|+|+|+|||||++.. +.
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iW-ss~~t~~~~--~~~~~~~L~~~GNlvl~d~~-----~~ 73 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIW-SSNNTSGRG--NSGCYLVLQDDGNLVLYDSS-----GN 73 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEE-E--S-TTSS---SSEEEEEETTSEEEEEETT-----SE
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEE-EecccCCcc--ccCeEEEEeCCCCEEEEeec-----ce
Confidence 5899999999999532 37899999999999999999999 98 433321 24789999999999999965 78
Q ss_pred eEeeecCCCCCccCCCCeeeceecCCCeeEEEEecCCCCCC
Q 014851 156 ILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPS 196 (417)
Q Consensus 156 ~lWqSFd~PTDTlLPgqkL~~n~~~G~~~~LtSw~S~~dps 196 (417)
+|||||||||||+||+|+|+.+..+|.+..|+||++.+|||
T Consensus 74 ~lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 74 VLWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EEEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EEEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999999999999766666556799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=7e-25 Score=186.91 Aligned_cols=115 Identities=37% Similarity=0.579 Sum_probs=98.2
Q ss_pred CcccCCCeEEeCCCeEEEEeecCCCCCccccccCceEEEEEeccCCCccEEeeCCCCCCCCCCceEEEecCCCEEEEecC
Q 014851 33 QQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKG 112 (417)
Q Consensus 33 ~~l~~~~~l~S~~g~F~lgf~~~~~~~~~~~~~~~~~lgiw~~~~~~~~vW~Anr~~p~~~~~~~l~l~~dG~Lvl~d~~ 112 (417)
+.|..|++|+|+++.|++|||...... ..+++|||.+.+.++||.||++.|. ...+.|.|+.||+|+|+|.+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~-------~dgnlv~~~~~~~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~ 73 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQS-------RDYNLILYKGSSRTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGS 73 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCC-------CeEEEEEEeCCCCeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCC
Confidence 467889999999999999999875431 2789999987556899999999984 35578999999999999999
Q ss_pred CCeEEEecccccccccCCceEEEEecCCCEEEEeccccCCCCceEeeecCCC
Q 014851 113 GSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYP 164 (417)
Q Consensus 113 ~~~vW~ss~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqSFd~P 164 (417)
|.+|| ++++.. . ....+|+|+|+|||||++.+ +.+||||||||
T Consensus 74 g~~vW-~S~~~~-~--~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~~P 116 (116)
T cd00028 74 GTVVW-SSNTTR-V--NGNYVLVLLDDGNLVLYDSD-----GNFLWQSFDYP 116 (116)
T ss_pred CcEEE-EecccC-C--CCceEEEEeCCCCEEEECCC-----CCEEEcCCCCC
Confidence 99999 988543 2 45678999999999999976 78999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=1.3e-23 Score=178.51 Aligned_cols=113 Identities=39% Similarity=0.592 Sum_probs=97.0
Q ss_pred CcccCCCeEEeCCCeEEEEeecCCCCCccccccCceEEEEEeccCCCccEEeeCCCCCCCCCCceEEEecCCCEEEEecC
Q 014851 33 QQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKG 112 (417)
Q Consensus 33 ~~l~~~~~l~S~~g~F~lgf~~~~~~~~~~~~~~~~~lgiw~~~~~~~~vW~Anr~~p~~~~~~~l~l~~dG~Lvl~d~~ 112 (417)
+.|..|+.|+|+++.|++|||..... ..+++|||...+.++||+|||+.|+.. .+.|.|+.||+|+|+|.+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q--------~dgnlV~~~~~~~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~ 72 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIMQ--------NDYNLILYKSSSRTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGD 72 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCCC--------CCEEEEEEECCCCcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCC
Confidence 56778999999999999999987533 478899998754679999999999764 388999999999999999
Q ss_pred CCeEEEecccccccccCCceEEEEecCCCEEEEeccccCCCCceEeeecCC
Q 014851 113 GSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDY 163 (417)
Q Consensus 113 ~~~vW~ss~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqSFd~ 163 (417)
|.+|| ++++. .+ ....+++|+|+|||||++.. +.+|||||||
T Consensus 73 g~~vW-~S~t~-~~--~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~~ 114 (114)
T smart00108 73 GRVVW-SSNTT-GA--NGNYVLVLLDDGNLVIYDSD-----GNFLWQSFDY 114 (114)
T ss_pred CCEEE-Eeccc-CC--CCceEEEEeCCCCEEEECCC-----CCEEeCCCCC
Confidence 99999 98854 22 55678999999999999976 7899999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.68 E-value=1.7e-16 Score=133.96 Aligned_cols=103 Identities=30% Similarity=0.680 Sum_probs=92.5
Q ss_pred EEeCCcCCCceecCcccccccccccCCceeEEEEEcCCeEEEEEEecCCCeEEEEEeCCCccEEEEe--cCCCCeEEeee
Q 014851 222 WRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFT--RDTSGWIWETT 299 (417)
Q Consensus 222 W~sg~w~g~~f~~~p~~~~~~~~~~~~~~~~~f~~n~~e~~~~y~~~~~~~~~rl~Ld~dG~lr~y~--~~~~~W~~~w~ 299 (417)
||+|+|+|..|+++|+|. ... .+.+.|+.+++|.+++|.+.+.+.++|++||++|++++|. +..+.|.+.|.
T Consensus 1 wrsG~WnG~~f~g~p~~~-----~~~-~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~ 74 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMS-----SNS-LYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWS 74 (110)
T ss_pred CCccccCCeEECCccccc-----ccc-eeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCcEEEEEE
Confidence 899999999999999986 444 7888999999999999999988899999999999999999 77889999999
Q ss_pred cC---CCCCccCCCCCCccCCCCCCCCCCCcceEE
Q 014851 300 SP---CNTNYTMNATGVCLNEKPSNCRNGSEFFAP 331 (417)
Q Consensus 300 ~P---C~~yg~~~~s~GC~r~~~l~C~~~~d~F~~ 331 (417)
+| |++|+.|...+-|..+..+.|+.- ++|.+
T Consensus 75 ~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl-~GF~P 108 (110)
T PF00954_consen 75 APKDQCDVYGFCGPNGICNSNNSPKCSCL-PGFEP 108 (110)
T ss_pred ecccCCCCccccCCccEeCCCCCCceECC-CCcCC
Confidence 99 999999999999988877778764 67754
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.57 E-value=3.6e-15 Score=114.43 Aligned_cols=60 Identities=27% Similarity=0.599 Sum_probs=50.4
Q ss_pred CcceEEccCccccCcccee-eecCCCCChHHHHHhhccCCceEEEEeec-CCCCceEEecccccc
Q 014851 326 SEFFAPRKGCMNVSFTYMN-IDDNAGLALSDCHAKCWTNCSCSAYSSVF-DNGTGCEFWSREVQF 388 (417)
Q Consensus 326 ~d~F~~l~~~~~~p~~~~~-~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~-~~~~gC~lw~~~l~~ 388 (417)
+|+|++|++ |++|++... +. .+.++++|+++||+||||+||+|.. .++++|++|+++|.+
T Consensus 4 ~d~F~~l~~-~~~p~~~~~~~~--~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d 65 (66)
T PF08276_consen 4 GDGFLKLPN-MKLPDFDNAIVD--SSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVD 65 (66)
T ss_pred CCEEEEECC-eeCCCCcceeee--cCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeec
Confidence 489999999 999998665 33 4589999999999999999999962 245679999999854
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.43 E-value=2.4e-13 Score=108.29 Aligned_cols=80 Identities=25% Similarity=0.558 Sum_probs=61.0
Q ss_pred CCCCCCC--CcceEEccCccccCccceeeecCCCCChHHHHHhhccCCceEEEEeecCCCCceEEecccccccC-CCCCC
Q 014851 319 PSNCRNG--SEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIP-DEGFG 395 (417)
Q Consensus 319 ~l~C~~~--~d~F~~l~~~~~~p~~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~gC~lw~~~l~~~~-~~~~g 395 (417)
+++|... .+.|.++.+ +++|+..... ...++++|+++||+||+|+||+|. +++++|++|.+.+.... ....+
T Consensus 2 ~~~C~~~~~~~~f~~~~~-~~~~~~~~~~---~~~s~~~C~~~Cl~nCsC~a~~~~-~~~~~C~~~~~~~~~~~~~~~~~ 76 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPD-VKLPDNASAI---TAISLEECREACLSNCSCTAYAYN-NGSGGCLLWNGLLNNLRSLSSGG 76 (84)
T ss_pred CcccCCCCCCCEEEEeCC-eeCCCchhhh---ccCCHHHHHHHHhcCCCcceeeec-CCCCeEEEEeceecceEeecCCC
Confidence 4567653 268999999 9999765432 457899999999999999999996 23556999999885543 23346
Q ss_pred ceEEEEee
Q 014851 396 REIYLLTY 403 (417)
Q Consensus 396 ~~~ylrv~ 403 (417)
.++||||+
T Consensus 77 ~~~yiKv~ 84 (84)
T cd01098 77 GTLYLRLA 84 (84)
T ss_pred cEEEEEeC
Confidence 89999985
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.38 E-value=5.4e-13 Score=106.06 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=55.3
Q ss_pred cceEEccCccccCccceeeecCCCCChHHHHHhhcc---CCceEEEEeecCCCCceEEecccc-cccC-CCCCCceEEEE
Q 014851 327 EFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWT---NCSCSAYSSVFDNGTGCEFWSREV-QFIP-DEGFGREIYLL 401 (417)
Q Consensus 327 d~F~~l~~~~~~p~~~~~~~~~~~~~~~~C~~~Cl~---nCsC~a~~y~~~~~~gC~lw~~~l-~~~~-~~~~g~~~ylr 401 (417)
..|+++.+ |++|++.. .++++|+++|++ ||||+||+|.. .+.||++|+++| ..++ ..+.|.+||+|
T Consensus 9 g~fl~~~~-~klpd~~~-------~s~~eC~~~Cl~~~~nCsC~Aya~~~-~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r 79 (80)
T cd00129 9 GTTLIKIA-LKIKTTKA-------NTADECANRCEKNGLPFSCKAFVFAK-ARKQCLWFPFNSMSGVRKEFSHGFDLYEN 79 (80)
T ss_pred CeEEEeec-ccCCcccc-------cCHHHHHHHHhcCCCCCCceeeeccC-CCCCeEEecCcchhhHHhccCCCceeEeE
Confidence 67999999 99997643 579999999999 99999999962 245899999999 6543 44568999998
Q ss_pred e
Q 014851 402 T 402 (417)
Q Consensus 402 v 402 (417)
.
T Consensus 80 ~ 80 (80)
T cd00129 80 K 80 (80)
T ss_pred C
Confidence 4
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.74 E-value=4.9e-08 Score=82.71 Aligned_cols=89 Identities=26% Similarity=0.357 Sum_probs=63.4
Q ss_pred eEEEecCCCEEEEecC-CCeEEEecccccccccCCceEEEEecCCCEEEEeccccCCCCceEeeecCCCCCccCCCCeee
Q 014851 97 VLRMDTDGILKFAYKG-GSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLG 175 (417)
Q Consensus 97 ~l~l~~dG~Lvl~d~~-~~~vW~ss~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqSFd~PTDTlLPgqkL~ 175 (417)
.+.++.||++|+++.. +.++| ++++.... .....+.|+++|||||++.+ +.+||+| +|-
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW-~snt~~~~--~~~~~l~l~~dGnLvl~~~~-----g~~vW~S-----~t~------- 82 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVW-VANRDNPV--SDSCTLTLQSDGNLVLYDGD-----GRVVWSS-----NTT------- 82 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEE-ECCCCCCC--CCCEEEEEeCCCCEEEEeCC-----CCEEEEe-----ccc-------
Confidence 4566789999999765 57999 98854322 23478999999999999875 6899997 110
Q ss_pred ceecCCCeeEEEEecCCCCCCCcceEEeecCCCccceEEeeCCeEEEEeC
Q 014851 176 INLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSG 225 (417)
Q Consensus 176 ~n~~~G~~~~LtSw~S~~dps~G~ysl~~~~~g~~~l~i~~~~~~YW~sg 225 (417)
...|.|.+.|+++|+.+++- ...++.|.+.
T Consensus 83 -------------------~~~~~~~~~L~ddGnlvl~~-~~~~~~W~Sf 112 (114)
T smart00108 83 -------------------GANGNYVLVLLDDGNLVIYD-SDGNFLWQSF 112 (114)
T ss_pred -------------------CCCCceEEEEeCCCCEEEEC-CCCCEEeCCC
Confidence 12567889999999876542 2245788753
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.65 E-value=1.2e-07 Score=80.60 Aligned_cols=89 Identities=26% Similarity=0.344 Sum_probs=63.5
Q ss_pred EEEec-CCCEEEEecC-CCeEEEecccccccccCCceEEEEecCCCEEEEeccccCCCCceEeeecCCCCCccCCCCeee
Q 014851 98 LRMDT-DGILKFAYKG-GSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLG 175 (417)
Q Consensus 98 l~l~~-dG~Lvl~d~~-~~~vW~ss~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqSFd~PTDTlLPgqkL~ 175 (417)
+.++. ||+||+++.. +.++| ++++.... .....+.|+++|||||++.+ +.+||+|-..
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW-~snt~~~~--~~~~~l~l~~dGnLvl~~~~-----g~~vW~S~~~------------ 83 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVW-VANRDNPS--GSSCTLTLQSDGNLVIYDGS-----GTVVWSSNTT------------ 83 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEE-ECCCCCCC--CCCEEEEEecCCCeEEEcCC-----CcEEEEeccc------------
Confidence 45565 9999999765 57899 98854322 34578999999999999875 6899997110
Q ss_pred ceecCCCeeEEEEecCCCCCCCcceEEeecCCCccceEEeeCCeEEEEeCC
Q 014851 176 INLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGE 226 (417)
Q Consensus 176 ~n~~~G~~~~LtSw~S~~dps~G~ysl~~~~~g~~~l~i~~~~~~YW~sg~ 226 (417)
.+.+.+.+.|+.+|+.+++-. ...+.|.+..
T Consensus 84 -------------------~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf~ 114 (116)
T cd00028 84 -------------------RVNGNYVLVLLDDGNLVLYDS-DGNFLWQSFD 114 (116)
T ss_pred -------------------CCCCceEEEEeCCCCEEEECC-CCCEEEcCCC
Confidence 025678899999998765422 2467888653
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.54 E-value=3e-07 Score=71.38 Aligned_cols=71 Identities=21% Similarity=0.399 Sum_probs=50.8
Q ss_pred cceEEccCccccCccceeeecCCCCChHHHHHhhcc-CCceEEEEeecCCCCceEEec-ccccccC-CCCCCceEEEE
Q 014851 327 EFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWT-NCSCSAYSSVFDNGTGCEFWS-REVQFIP-DEGFGREIYLL 401 (417)
Q Consensus 327 d~F~~l~~~~~~p~~~~~~~~~~~~~~~~C~~~Cl~-nCsC~a~~y~~~~~~gC~lw~-~~l~~~~-~~~~g~~~ylr 401 (417)
..|..+++ +.+++...... ...++++|++.|++ +|+|.||.|.. .+.+|.+|. +.+.... ....+.++|.|
T Consensus 4 ~~f~~~~~-~~l~~~~~~~~--~~~s~~~C~~~C~~~~~~C~s~~y~~-~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPN-TKLPGFSRIVI--SVASLEECASKCLNSNCSCRSFTYNN-GTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecC-ccCCCCcceeE--cCCCHHHHHHHhCCCCCceEEEEEcC-CCCEEEEeeCCccccceecccCCceeEEe
Confidence 46899999 88875443222 46799999999999 99999999953 344599999 5554332 23445567765
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.45 E-value=1.7e-06 Score=73.56 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=68.1
Q ss_pred CeEEeCCCeEEEEeecCCCCCccccccCceEEEEEeccCCCccEEee-CCCCCCCCCCceEEEecCCCEEEEecCCCeEE
Q 014851 39 DELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVA-NPNNPVPDSSGVLRMDTDGILKFAYKGGSRIA 117 (417)
Q Consensus 39 ~~l~S~~g~F~lgf~~~~~~~~~~~~~~~~~lgiw~~~~~~~~vW~A-nr~~p~~~~~~~l~l~~dG~Lvl~d~~~~~vW 117 (417)
+.+.+.+|.+.|-|+.+|+- +.|.. ..+++|.. +...... ..+.+.|+.||||||+|..+.++|
T Consensus 12 ~p~~~~s~~~~L~l~~dGnL-------------vl~~~-~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW 76 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGNL-------------VLYDS-NGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLW 76 (114)
T ss_dssp EEEEECETTEEEEEETTSEE-------------EEEET-TTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEE
T ss_pred cccccccccccceECCCCeE-------------EEEcC-CCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEE
Confidence 56666569999999987642 22332 25679999 5444321 357899999999999999999999
Q ss_pred EecccccccccCCceEEEEec--CCCEEEEeccccCCCCceEeeecCCCC
Q 014851 118 VSSNRAKKANSETNITATLLD--SGNLLVRQIGADGIAGPILWQSFDYPS 165 (417)
Q Consensus 118 ~ss~~~~~~~~~~~~~a~Lld--~GNlVl~d~~~~~~~~~~lWqSFd~PT 165 (417)
++. .. ...+.+.+++ +||++ +... ..+.|.|=+.|.
T Consensus 77 -~Sf-~~----ptdt~L~~q~l~~~~~~-~~~~-----~~~sw~s~~dps 114 (114)
T PF01453_consen 77 -QSF-DY----PTDTLLPGQKLGDGNVT-GKND-----SLTSWSSNTDPS 114 (114)
T ss_dssp -EST-TS----SS-EEEEEET--TSEEE-EEST-----SSEEEESS----
T ss_pred -eec-CC----CccEEEeccCcccCCCc-cccc-----eEEeECCCCCCC
Confidence 875 32 4467788888 88888 6543 578999877663
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.49 E-value=0.00013 Score=56.69 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=34.6
Q ss_pred cCccccCccceeeecCCCCChHHHHHhhccCCceEEEEeecCCCCceEEeccc
Q 014851 333 KGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSRE 385 (417)
Q Consensus 333 ~~~~~~p~~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~gC~lw~~~ 385 (417)
++ +.++....... ...+.++|+++|+.+|+|.||.|.. +...|+|+...
T Consensus 10 ~~-~~~~g~d~~~~--~~~s~~~Cq~~C~~~~~C~afT~~~-~~~~C~lk~~~ 58 (73)
T cd01100 10 SN-VDFRGGDLSTV--FASSAEQCQAACTADPGCLAFTYNT-KSKKCFLKSSE 58 (73)
T ss_pred CC-CccccCCccee--ecCCHHHHHHHcCCCCCceEEEEEC-CCCeEEcccCC
Confidence 45 55544333222 3468999999999999999999962 23349998875
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=93.12 E-value=0.11 Score=39.94 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=38.8
Q ss_pred eEEccCccccCccceeeecCCCCChHHHHHhhccCCc-eEEEEeecCCCCceEEecccccc
Q 014851 329 FAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCS-CSAYSSVFDNGTGCEFWSREVQF 388 (417)
Q Consensus 329 F~~l~~~~~~p~~~~~~~~~~~~~~~~C~~~Cl~nCs-C~a~~y~~~~~~gC~lw~~~l~~ 388 (417)
|.++.+ ..+........ ...++++|.+.|+.+=. |.+|.|.. ....|.|.......
T Consensus 4 f~~~~~-~~l~~~~~~~~--~v~s~~~C~~~C~~~~~~C~s~~y~~-~~~~C~L~~~~~~~ 60 (79)
T PF00024_consen 4 FERIPG-YRLSGHSIKEI--NVPSLEECAQLCLNEPRRCKSFNYDP-SSKTCYLSSSDRSS 60 (79)
T ss_dssp EEEEEE-EEEESCEEEEE--EESSHHHHHHHHHHSTT-ESEEEEET-TTTEEEEECSSSSS
T ss_pred eEEECC-EEEeCCcceEE--cCCCHHHHHhhcCcCcccCCeEEEEC-CCCEEEEcCCCCCc
Confidence 666666 55544332211 34589999999999999 99999962 23349998876543
No 14
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=87.86 E-value=0.96 Score=35.77 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCCChHHHHHhhccCCceEEEEeecCCCC--ceEEecc
Q 014851 349 AGLALSDCHAKCWTNCSCSAYSSVFDNGT--GCEFWSR 384 (417)
Q Consensus 349 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~--gC~lw~~ 384 (417)
...+.++|++.|..+=.|.+|.|...+.. .|+|...
T Consensus 20 ~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 20 YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 46789999999999999999999733222 6999865
No 15
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=84.45 E-value=0.82 Score=32.01 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=17.3
Q ss_pred CCChHHHHHhhccCCceEEEEee
Q 014851 350 GLALSDCHAKCWTNCSCSAYSSV 372 (417)
Q Consensus 350 ~~~~~~C~~~Cl~nCsC~a~~y~ 372 (417)
..+.++|+++|..+=.|.+|.|.
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~ 37 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFN 37 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEE
T ss_pred CCCHHHHHHHccCCCCCCEEEEE
Confidence 46899999999999999999996
No 16
>smart00605 CW CW domain.
Probab=82.17 E-value=4.9 Score=32.47 Aligned_cols=55 Identities=18% Similarity=0.440 Sum_probs=37.4
Q ss_pred CCCChHHHHHhhccCCceEEEEeecCCCCceEEeccc-cccc-C-CCCCCceEEEEeecc
Q 014851 349 AGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSRE-VQFI-P-DEGFGREIYLLTYDQ 405 (417)
Q Consensus 349 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~gC~lw~~~-l~~~-~-~~~~g~~~ylrv~~~ 405 (417)
...+.++|.+.|..+..|..+.. .....|.++.-+ +..+ + +...|..+=+|+..+
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~--~~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~~ 77 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYG--NSSETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTD 77 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEec--CCCCceEEEEcCCeEEEEEccCCCCcEEEEEEeCC
Confidence 35688999999999999998765 223569886653 2222 2 234566788887643
No 17
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=79.16 E-value=5 Score=31.48 Aligned_cols=36 Identities=17% Similarity=0.526 Sum_probs=28.8
Q ss_pred CCChHHHHHhhcc--CCceEEEEeecCCCCceEEecccc
Q 014851 350 GLALSDCHAKCWT--NCSCSAYSSVFDNGTGCEFWSREV 386 (417)
Q Consensus 350 ~~~~~~C~~~Cl~--nCsC~a~~y~~~~~~gC~lw~~~l 386 (417)
..++++|.++|++ +=.|.+|.|.+. ...|.|-..+.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~-~~~C~L~~~~~ 61 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYK-SKECILSDEDR 61 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcC-CCEEEEeCCCc
Confidence 4789999999999 889999999632 33499877665
No 18
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=78.87 E-value=6 Score=29.88 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=28.1
Q ss_pred CCCChHHHHHhhccCCceEEEEeecCCCCceEEeccc
Q 014851 349 AGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSRE 385 (417)
Q Consensus 349 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~gC~lw~~~ 385 (417)
...+.++|-+.|..+=+|..+.+ + ...|.++.-+
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~--~-~~~C~~y~~~ 51 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYF--D-SGKCYLYNYG 51 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEe--C-CCCEEEEEcC
Confidence 45688999999999999999998 2 5569987653
No 19
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=56.05 E-value=19 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.0
Q ss_pred ceEEEecCCCEEEEecCCCeEE
Q 014851 96 GVLRMDTDGILKFAYKGGSRIA 117 (417)
Q Consensus 96 ~~l~l~~dG~Lvl~d~~~~~vW 117 (417)
.-+.++.+|++++.|..+..||
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEE
Confidence 3477888999999998887777
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=46.32 E-value=66 Score=32.65 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=33.9
Q ss_pred ecCCCEEEEec-CCCeEEEecccccccccC----CceEEEEecCCCEEEEeccccCCCCceEeee
Q 014851 101 DTDGILKFAYK-GGSRIAVSSNRAKKANSE----TNITATLLDSGNLLVRQIGADGIAGPILWQS 160 (417)
Q Consensus 101 ~~dG~Lvl~d~-~~~~vW~ss~~~~~~~~~----~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqS 160 (417)
..+|.|+-.|. +|+.+| +........+. ...+.....+|.|+-.|.. +++++|+-
T Consensus 127 ~~~g~l~ald~~tG~~~W-~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~----tG~~~W~~ 186 (394)
T PRK11138 127 SEKGQVYALNAEDGEVAW-QTKVAGEALSRPVVSDGLVLVHTSNGMLQALNES----DGAVKWTV 186 (394)
T ss_pred cCCCEEEEEECCCCCCcc-cccCCCceecCCEEECCEEEEECCCCEEEEEEcc----CCCEeeee
Confidence 45688887776 799999 87632211001 1122233456778888865 58899985
No 21
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=41.98 E-value=92 Score=31.17 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=29.6
Q ss_pred EEEecCCCEEEEe-cCCCeEEEeccccccccc----CCceEEEEecCCCEEEEeccccCCCCceEee
Q 014851 98 LRMDTDGILKFAY-KGGSRIAVSSNRAKKANS----ETNITATLLDSGNLLVRQIGADGIAGPILWQ 159 (417)
Q Consensus 98 l~l~~dG~Lvl~d-~~~~~vW~ss~~~~~~~~----~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWq 159 (417)
.....+|.|.-.| .+|+.+| +........+ .......-..+|+|+..|.. +++++|+
T Consensus 69 ~v~~~~g~v~a~d~~tG~~~W-~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~----tG~~~W~ 130 (377)
T TIGR03300 69 YAADADGTVVALDAETGKRLW-RVDLDERLSGGVGADGGLVFVGTEKGEVIALDAE----DGKELWR 130 (377)
T ss_pred EEECCCCeEEEEEccCCcEee-eecCCCCcccceEEcCCEEEEEcCCCEEEEEECC----CCcEeee
Confidence 3334457777667 4788888 6552221100 01112222345666666654 4778886
No 22
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=41.65 E-value=50 Score=30.23 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCEEEEec-CCCeEEEeccccccc--cc-----CCceEEEEecCCCEEEEeccccCCCCceEeee
Q 014851 103 DGILKFAYK-GGSRIAVSSNRAKKA--NS-----ETNITATLLDSGNLLVRQIGADGIAGPILWQS 160 (417)
Q Consensus 103 dG~Lvl~d~-~~~~vW~ss~~~~~~--~~-----~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqS 160 (417)
+|.|...|. +|+.+| +....... .. .+........+|+|+..|.. +++.+|+-
T Consensus 2 ~g~l~~~d~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~----tG~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELW-SYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK----TGKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT----TSEEEEEE
T ss_pred CCEEEEEECCCCCEEE-EEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC----CCCEEEEe
Confidence 577888887 889999 77621100 00 01112222477777778854 48899985
No 23
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=39.48 E-value=1.5e+02 Score=27.01 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=46.0
Q ss_pred CccEEeeCCCCCCCC-----CCceEEEecCCCEEEEe-cCCCeEEEec-cccccc---ccC------CceEEEEecCCCE
Q 014851 79 FYPLWVANPNNPVPD-----SSGVLRMDTDGILKFAY-KGGSRIAVSS-NRAKKA---NSE------TNITATLLDSGNL 142 (417)
Q Consensus 79 ~~~vW~Anr~~p~~~-----~~~~l~l~~dG~Lvl~d-~~~~~vW~ss-~~~~~~---~~~------~~~~a~Lld~GNl 142 (417)
..++|...-+.++.. .+..+....+|.|...| .+|..+| .. ...... .+. +........+|.+
T Consensus 56 G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLW-SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL 134 (238)
T ss_dssp SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEE-EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE
T ss_pred CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceee-eeccccccccccccccCceEecCEEEEEeccCcE
Confidence 778998886555322 22344555678888888 6899999 73 311000 000 1122333448889
Q ss_pred EEEeccccCCCCceEeee
Q 014851 143 LVRQIGADGIAGPILWQS 160 (417)
Q Consensus 143 Vl~d~~~~~~~~~~lWqS 160 (417)
+..|.. ++.++|+-
T Consensus 135 ~~~d~~----tG~~~w~~ 148 (238)
T PF13360_consen 135 VALDPK----TGKLLWKY 148 (238)
T ss_dssp EEEETT----TTEEEEEE
T ss_pred EEEecC----CCcEEEEe
Confidence 988855 58899985
No 24
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.58 E-value=70 Score=31.39 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=31.4
Q ss_pred CccEEeeCCCCCCCCCC-----ceEEEecCCCEEEEecCCCeEEEecc
Q 014851 79 FYPLWVANPNNPVPDSS-----GVLRMDTDGILKFAYKGGSRIAVSSN 121 (417)
Q Consensus 79 ~~~vW~Anr~~p~~~~~-----~~l~l~~dG~Lvl~d~~~~~vW~ss~ 121 (417)
.+.+|.|.|..|+-.+. .+..=+-||+|.-.|+.|+.|| ...
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvw-r~~ 215 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVW-RPA 215 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEE-eec
Confidence 68899999999987541 2333345888888888888888 644
No 25
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=37.12 E-value=4.5e+02 Score=26.49 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=43.3
Q ss_pred CccEEeeCCCCCCCCC----Cc-eEEEecCCCEEEEec-CCCeEEEecccccc-----c-ccC---CceEEEEecCCCEE
Q 014851 79 FYPLWVANPNNPVPDS----SG-VLRMDTDGILKFAYK-GGSRIAVSSNRAKK-----A-NSE---TNITATLLDSGNLL 143 (417)
Q Consensus 79 ~~~vW~Anr~~p~~~~----~~-~l~l~~dG~Lvl~d~-~~~~vW~ss~~~~~-----~-~~~---~~~~a~Lld~GNlV 143 (417)
..++|..+...++... .+ .+.-+.+|.|+-+|. +|+.+| +...... . .+. ...+..-..+|.++
T Consensus 140 G~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 140 GEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKW-TVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVS 218 (394)
T ss_pred CCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEee-eecCCCCcccccCCCCCEEECCEEEEEcCCCEEE
Confidence 6689988765433211 13 344455788887776 799999 7652110 0 000 01122334567777
Q ss_pred EEeccccCCCCceEee
Q 014851 144 VRQIGADGIAGPILWQ 159 (417)
Q Consensus 144 l~d~~~~~~~~~~lWq 159 (417)
..|.. ++..+|+
T Consensus 219 a~d~~----~G~~~W~ 230 (394)
T PRK11138 219 AVLME----QGQLIWQ 230 (394)
T ss_pred EEEcc----CChhhhe
Confidence 77654 5789997
No 26
>smart00765 MANEC The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.
Probab=25.38 E-value=1.1e+02 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=26.3
Q ss_pred CCCChHHHHHhhccCCceEEEEee--cCC-CCceEEecc
Q 014851 349 AGLALSDCHAKCWTNCSCSAYSSV--FDN-GTGCEFWSR 384 (417)
Q Consensus 349 ~~~~~~~C~~~Cl~nCsC~a~~y~--~~~-~~gC~lw~~ 384 (417)
...+.+||..+|=+.=+|..+.+. ..+ ...|+|.+=
T Consensus 36 ~~~s~edC~~aCC~~~~CnlAv~e~~~~~~~~~CyLf~C 74 (93)
T smart00765 36 AVNTWEDCVRACCSTPNCNLAVFELRREDAEGNCYLFNC 74 (93)
T ss_pred ccCCHHHHHHHHcCCCCCcEEEEeccCCCCCCceEEEEc
Confidence 456789999999998889887774 122 233998764
No 27
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.74 E-value=2.2e+02 Score=29.99 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=43.0
Q ss_pred CccEEeeCCC-------CCCCCCCceE-EEecCCCEEEEec-CCCeEEEecccccc---cc----cC-----C-ceEEEE
Q 014851 79 FYPLWVANPN-------NPVPDSSGVL-RMDTDGILKFAYK-GGSRIAVSSNRAKK---AN----SE-----T-NITATL 136 (417)
Q Consensus 79 ~~~vW~Anr~-------~p~~~~~~~l-~l~~dG~Lvl~d~-~~~~vW~ss~~~~~---~~----~~-----~-~~~a~L 136 (417)
.+++|..+-. .|+... +.+ ..+.+|.|+-+|. +|+.+| +..+... .. +. . ..+..-
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~~-g~vy~~~~~g~l~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~ 116 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVVD-GDMYFTTSHSALFALDAATGKVLW-RYDPKLPADRGCCDVVNRGVAYWDPRKVFFG 116 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEEC-CEEEEeCCCCcEEEEECCCChhhc-eeCCCCCccccccccccCCcEEccCCeEEEe
Confidence 4567877643 244322 334 4445788887776 689999 8653211 00 00 0 111112
Q ss_pred ecCCCEEEEeccccCCCCceEeee
Q 014851 137 LDSGNLLVRQIGADGIAGPILWQS 160 (417)
Q Consensus 137 ld~GNlVl~d~~~~~~~~~~lWqS 160 (417)
..+|.++-.|.. +++.+|+-
T Consensus 117 ~~~g~v~AlD~~----TG~~~W~~ 136 (488)
T cd00216 117 TFDGRLVALDAE----TGKQVWKF 136 (488)
T ss_pred cCCCeEEEEECC----CCCEeeee
Confidence 346788878865 58999994
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.41 E-value=48 Score=28.45 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=17.2
Q ss_pred cchhHHHHHHHHHhhhcccccccccccccCCCcccCCCeE
Q 014851 2 TWVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDEL 41 (417)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~l 41 (417)
+|+.|++|++++|+++++.++ .+.-..+.|..-..|..|
T Consensus 1 RW~l~~iii~~i~l~~~~~~~-~~rRR~r~G~~P~~gt~w 39 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC-HNRRRRRRGLQPIYGTRW 39 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCcCCcee
Confidence 366665555544444332222 223334445544445444
No 29
>PF07502 MANEC: MANEC domain; InterPro: IPR011106 The MANSC (motif at N terminus with seven cysteines) domain is a module with a well-conserved seven cysteine motif that is present at the N terminus of higher multicellular animal membrane and extracellular proteins. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulphide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase [].
Probab=22.14 E-value=1.5e+02 Score=24.12 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCChHHHHHhhccCCceEEEEeecCCC---Cc-eEEecc
Q 014851 349 AGLALSDCHAKCWTNCSCSAYSSVFDNG---TG-CEFWSR 384 (417)
Q Consensus 349 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~---~g-C~lw~~ 384 (417)
...+.++|..+|=..=.|..+.+..... .. |+|.+=
T Consensus 34 ~v~s~~dC~~aCC~~~~Cnlav~e~~~~~~~~~~CyLf~C 73 (92)
T PF07502_consen 34 EVSSAEDCVRACCSTPNCNLAVFEERPTGSEDNSCYLFNC 73 (92)
T ss_pred ccCCHHHHHHHhCCCCCCcEEEEeccCCCCCCceEEEEEc
Confidence 4578999999999888899888862222 23 998764
No 30
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=21.36 E-value=1.4e+02 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=19.4
Q ss_pred CccEEeeCCCCCCCCCCceEEEecCCCEEEEe
Q 014851 79 FYPLWVANPNNPVPDSSGVLRMDTDGILKFAY 110 (417)
Q Consensus 79 ~~~vW~Anr~~p~~~~~~~l~l~~dG~Lvl~d 110 (417)
.++.|+-+....+. ....+.+..+|+|.+.+
T Consensus 34 P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 34 LRIYWMNSDLLHIT-QDERVSMGQNGNLYFAN 64 (95)
T ss_pred CEEEEECCCCcccc-ccccEEECCCceEEEEE
Confidence 55678844433343 34667887788887753
Done!