BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014852
(417 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255566078|ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 508
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/413 (80%), Positives = 367/413 (88%), Gaps = 1/413 (0%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGLSAGKRLLSS+FYYSD++EK S N+ G + Q+ STK ++ AKKSSNY PS
Sbjct: 1 MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFA-STAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120
FPSSNR TQ IKALKEHVDT A STA + N +EEESS+LDYSVEALLLLQKSMLE
Sbjct: 61 FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120
Query: 121 KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180
KQWNLSFERT +DSPS+K+ KK+PVTCSGVSARQRR+N ++K LSQ+K +Q N KQL
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
+S +SPEL+QNRLKGYVKGVVSEELL+HAEVVRLS+ IK GLSL+DHK RLKERLGC+PS
Sbjct: 181 KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240
Query: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
EQ+A SL+ISR ELQS + CSLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQGGLI
Sbjct: 241 DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360
Query: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
EEKGVTPS+DRIAE LN+SQKKVRNATEA+ KVFSLDREAFPSLNGLPGETHH
Sbjct: 361 EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHH 413
>gi|224146103|ref|XP_002325882.1| predicted protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/414 (77%), Positives = 361/414 (87%), Gaps = 1/414 (0%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MMATAAVIGLS+GKRLLSSSFYYSD++EK S +ND G +TKNV+ AKKSSNY P
Sbjct: 1 MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60
Query: 61 SFPSSNRQTQPIKALKEHVDTNFAST-AEPWAEPPNSIEEESSELDYSVEALLLLQKSML 119
SFPSSNR + IKALKEHVDT AS+ W + + EEESS LDYSVEALLLLQKSML
Sbjct: 61 SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQWNLSFERT +DS SKK +KK+PVTCSGVSARQRR+N+++K +Q+K + Q + K
Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
LRS+ SP+L+QNRLKGYVKGVVS+E+L H EVVRLS+ I+ GLS +DHK RLKERLGCEP
Sbjct: 181 LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299
S EQ+A SLRISR +LQS L++CSLAREKL MSNVRLVMSIAQ+YDNMGA+MADLVQGGL
Sbjct: 241 SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300
Query: 300 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359
IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+R
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360
Query: 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
LEEKGVTPS+DRIAE LNMSQ+KVRNATEAI KVFSLDREAFPSLNGLPGETHH
Sbjct: 361 LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHH 414
>gi|449468291|ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 312/414 (75%), Positives = 359/414 (86%), Gaps = 2/414 (0%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MMATAA+IGL A KRLL+SS YYSD +EK Y ND +QV S+K+VV AK S+N++P
Sbjct: 1 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
Query: 61 SFPSSNRQTQP-IKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSML 119
+PSSNR +Q IKA+KEHV+T + AEPW S E+E +EL Y+VEALLLLQKSML
Sbjct: 61 RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWHNT-TSWEDEETELKYTVEALLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQW+LSFE+TV TD+P +KT KKVPVTCSGVSARQRR++SK+KI S++ + Q SKQ
Sbjct: 120 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 179
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
LR ISPEL+QNRLKGYVKG++SEELL+HAEVVRLSKKIK GL+L++ K RLK+RLGCEP
Sbjct: 180 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 239
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299
S +QLA SL+ISR EL+S +ME SLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQGGL
Sbjct: 240 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299
Query: 300 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359
IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRNAK++
Sbjct: 300 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 359
Query: 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
L+EKG+TPS+DRIAE LNMS+KKV+NATEAI KVFSLDREAFPSLNGLPGETHH
Sbjct: 360 LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHH 413
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 359/415 (86%), Gaps = 10/415 (2%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGLS GKRLLSSS++YSDI EK SY +D GS + Q+ TK+++ AKKSSNY P+
Sbjct: 1 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNS--IEEESSELDYSVEALLLLQKSML 119
FP+SN+Q Q IKALKEHVD + + A+PW + NS +E ESSE+ YSVEALLLLQKSML
Sbjct: 61 FPASNQQNQSIKALKEHVD-DAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSK-KTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSK 178
EKQWNLSFER VLT++ SK K +KV VTCSGVSARQRR+N+K+K + ++ G+
Sbjct: 120 EKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRK------TAIKTCGAM 173
Query: 179 QLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE 238
QL+S ISPEL+Q+RLKGYVKG+VSEELL+HAEVV LS+KIK GLSL++HK RLKE+LGCE
Sbjct: 174 QLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCE 233
Query: 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 298
PS +Q+A SL+ISR EL++ ++ECSLAREKL MSNVRLVMSIAQ+YDN+GA+M DLVQGG
Sbjct: 234 PSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGG 293
Query: 299 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKL 358
LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAK
Sbjct: 294 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKF 353
Query: 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
RLEE+G+TP++DRIA+YLNMSQKKVRNATEAI K+ SLDREAFPSLNGL GETHH
Sbjct: 354 RLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHH 408
>gi|356531599|ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 305/415 (73%), Positives = 357/415 (86%), Gaps = 10/415 (2%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGLS GKRLLSSS++YSD+ EK SY +D GS + Q+ TK+++AAKKSSNY P+
Sbjct: 1 MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNS--IEEESSELDYSVEALLLLQKSML 119
FP+SN+Q Q IKALKEHVD + + A+ W + NS +E ESSE+ YSVEALLLLQKSML
Sbjct: 61 FPASNQQNQSIKALKEHVD-DAPTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSK-KTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSK 178
EKQWNLSFER VLT+ SK K KKV VTCSGVSARQRR+N+K+K + ++ G+
Sbjct: 120 EKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRK------TAIKTCGAM 173
Query: 179 QLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE 238
QL+S ISPEL+Q+RLKGYVKG+VSEELL+HAEVV LS++IK GLSL++HK RLKERLGCE
Sbjct: 174 QLKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCE 233
Query: 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 298
PS +Q+A SL+ISR EL++ ++EC+LAREKL MSNVRLVMSIAQ+YDN+GA+M DLVQGG
Sbjct: 234 PSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGG 293
Query: 299 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKL 358
LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAK
Sbjct: 294 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKF 353
Query: 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
RLEE+G+TP++DRIA+YLNMSQKKVRNATEAI K SLDREAFPSLNG+ GETHH
Sbjct: 354 RLEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGETHH 408
>gi|224124068|ref|XP_002319237.1| predicted protein [Populus trichocarpa]
gi|222857613|gb|EEE95160.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/414 (74%), Positives = 346/414 (83%), Gaps = 11/414 (2%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MMATA+ IGL+ GKRLLSSSFY+SD++EK S +ND G A+ Q+ +TK+V+ AKKSS Y P
Sbjct: 1 MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60
Query: 61 SFPSSNRQTQPIKALKEHVDTNFAS-TAEPWAEPPNSIEEESSELDYSVEALLLLQKSML 119
SFPSS R KALKE +DT AS T W + + EEESS LDYSVEAL+LLQKSML
Sbjct: 61 SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQWNLSFE +DS KK++KK+PVTCSGVSARQRRLN+K+K QN SK
Sbjct: 121 EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRK---------NQNQSKF 171
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
+ S ISP L+ NRLKGYVKGVVS+E+L H EVVRLS+ I+ GLSL+DHK LKERLGCEP
Sbjct: 172 M-SDISPGLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEP 230
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299
S EQLA SLRISR +LQS L++CSLAREKL MSNVRLVMSIAQ+ DNMGA+MADLVQ GL
Sbjct: 231 SDEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGL 290
Query: 300 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359
IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN RTLRLPNHLHERLGLIRNAK+R
Sbjct: 291 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIR 350
Query: 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
LEEKGVTPS+DRIAE LNMSQ+KVRNATEAI KVFSLDREAFPSLNGLPGETHH
Sbjct: 351 LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHH 404
>gi|2565297|gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 297/424 (70%), Positives = 344/424 (81%), Gaps = 29/424 (6%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYRPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+HAEVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
+M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHER
Sbjct: 284 EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
Query: 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
LGLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPG
Sbjct: 344 LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPG 403
Query: 410 ETHH 413
ETHH
Sbjct: 404 ETHH 407
>gi|15217767|ref|NP_176666.1| sigma factor A [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor
A; Short=Sigma-A; AltName: Full=RNA polymerase sigma
factor sig1; Short=Atsig1; Short=Sigma factor 1;
AltName: Full=RNA polymerase sigma factor sig2;
Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; Flags: Precursor
gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana]
gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana]
gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana]
gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| sigma factor A [Arabidopsis thaliana]
Length = 502
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/424 (69%), Positives = 344/424 (81%), Gaps = 29/424 (6%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
+M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHER
Sbjct: 284 EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
Query: 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
LGLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPG
Sbjct: 344 LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPG 403
Query: 410 ETHH 413
ETHH
Sbjct: 404 ETHH 407
>gi|334183639|ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana]
gi|332196178|gb|AEE34299.1| sigma factor A [Arabidopsis thaliana]
Length = 498
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/424 (69%), Positives = 344/424 (81%), Gaps = 29/424 (6%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVD--VASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
+M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHER
Sbjct: 284 EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
Query: 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
LGLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPG
Sbjct: 344 LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPG 403
Query: 410 ETHH 413
ETHH
Sbjct: 404 ETHH 407
>gi|11762220|gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
Length = 502
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 295/424 (69%), Positives = 344/424 (81%), Gaps = 29/424 (6%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRY+N+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYNNLGA 283
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
+M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHER
Sbjct: 284 EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
Query: 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
LGLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPG
Sbjct: 344 LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPG 403
Query: 410 ETHH 413
ETHH
Sbjct: 404 ETHH 407
>gi|2398851|dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 295/424 (69%), Positives = 343/424 (80%), Gaps = 29/424 (6%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SAR RR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
+M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHER
Sbjct: 284 EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
Query: 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
LGLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPG
Sbjct: 344 LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPG 403
Query: 410 ETHH 413
ETHH
Sbjct: 404 ETHH 407
>gi|2385344|emb|CAA74896.1| sigma factorB [Arabidopsis thaliana]
Length = 500
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 294/422 (69%), Positives = 342/422 (81%), Gaps = 29/422 (6%)
Query: 4 TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFP 63
TAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PSFP
Sbjct: 1 TAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPSFP 60
Query: 64 SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLLLQ 115
SSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LLLQ
Sbjct: 61 SSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILLLQ 116
Query: 116 KSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNKSI 171
KSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K++
Sbjct: 117 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 176
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
+ KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK RL
Sbjct: 177 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 223
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
K+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA+M
Sbjct: 224 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 283
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLG
Sbjct: 284 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 343
Query: 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGET 411
LIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPGET
Sbjct: 344 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 403
Query: 412 HH 413
HH
Sbjct: 404 HH 405
>gi|297837779|ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 298/423 (70%), Positives = 345/423 (81%), Gaps = 26/423 (6%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKK--SSNYN 59
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK SSNY+
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASSSNYS 60
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFASTAEPWAE--PPNSIEEESSELD---YSVEALLLL 114
PSFPSSNR TQ KALKE VD AST +PW +EEE + D +SVEALLLL
Sbjct: 61 PSFPSSNRHTQSAKALKESVDV--ASTEKPWIHNGTDKELEEEGYDDDLIGHSVEALLLL 118
Query: 115 QKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNKS 170
QKSMLEK WNLSFE+ ++S SK+T KK+PV TCSG+SARQRR+ +KKK ++ K+
Sbjct: 119 QKSMLEKSWNLSFEKAASSESSSKRTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 178
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+ + KQ+R GYVKGV+SE++L+HAEVVRLSKKIK+GL LDDHK R
Sbjct: 179 VSDVSSGKQVR-------------GYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSR 225
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA+
Sbjct: 226 LKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAE 285
Query: 291 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL
Sbjct: 286 MSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERL 345
Query: 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
GLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ K+FSLDR+AFPSLNGLPGE
Sbjct: 346 GLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGE 405
Query: 411 THH 413
THH
Sbjct: 406 THH 408
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/414 (69%), Positives = 339/414 (81%), Gaps = 2/414 (0%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MM+TAAVIGLSAGKRLLSSSFYYSD++EK + +D V S KNV+ AKKSS+Y+P
Sbjct: 1 MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60
Query: 61 SFPSSNRQTQPIKALKEHVDTNFASTAEP-WAEPPNSIEEESSELDYSVEALLLLQKSML 119
S SS R++Q K+LKEHVD + P W E ++ ES + D SVE LLLLQKSML
Sbjct: 61 SCVSS-RKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQWNLS E+T+ +K KK+ +TCSG SAR+RR++S++++L ++ S + +K
Sbjct: 120 EKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKP 179
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
LRS+I PEL+QNRLKGYVKGVVSEELLTHAEV++LSKKI+ GL L++ K RLKERLGCEP
Sbjct: 180 LRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEP 239
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299
S +QLA SL++SR +LQS L+ECSLARE+L MSNVRLVMSIAQRYDN+GA+MADLVQGGL
Sbjct: 240 SDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGL 299
Query: 300 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359
IGLLRGIEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLP +LHERL LIRNAK R
Sbjct: 300 IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKAR 359
Query: 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
LEEKG+TPSV+ IA LNMSQKKVRNATEA K++SLDREAFPSLNGLPGET H
Sbjct: 360 LEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLH 413
>gi|2706544|emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/418 (68%), Positives = 333/418 (79%), Gaps = 38/418 (9%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MAT AVIGL+AGKRLLSSSFYYSD++EKF +NDL S+ T++ + AKK+S+ + S
Sbjct: 1 MATTAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDLCSSQYH---TRSGITAKKTSSSSSS 57
Query: 62 FPSSN-----RQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQK 116
S + RQTQ KALKE V AS+ +PW P + E E ++D+SVEALLLLQ+
Sbjct: 58 NYSPSFPSSSRQTQSAKALKESV----ASSVQPWLPPGSDQELEEDDIDHSVEALLLLQR 113
Query: 117 SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNG 176
SMLEKQWNLSFE KT KKVPVTCSG+SARQRR+ +KKK + K++ + N
Sbjct: 114 SMLEKQWNLSFE----------KTRKKVPVTCSGISARQRRIGAKKK--TNVKAVSEVN- 160
Query: 177 SKQLRSMISPELIQNRL-KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
QN L KGYVKGV+S+ +L+HAEVVRLSKKIK+GL LD+HK RL +RL
Sbjct: 161 ------------FQNNLVKGYVKGVISDHVLSHAEVVRLSKKIKSGLRLDEHKSRLTDRL 208
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
GCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDNMGA+M+DLV
Sbjct: 209 GCEPSDEQLAMSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLV 268
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355
QGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLGLIRN
Sbjct: 269 QGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRN 328
Query: 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
AKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ K+FSLDR+AFPSLNGLPGETHH
Sbjct: 329 AKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHH 386
>gi|359489968|ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/418 (69%), Positives = 333/418 (79%), Gaps = 21/418 (5%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59
MM TAAVIGLSAG RLL+SS +YSD++EK S Y+ND+G + KN+++AKK SNY
Sbjct: 1 MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 60
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFA-STAEPWAEPPNSIEEESSELDYSVEALLLLQKSM 118
PS SNR Q +KALKEHV++ A STA+P +S E + +Y VEA LLLQKSM
Sbjct: 61 PS---SNRSIQSMKALKEHVESASAPSTADP---DLSSSSSEVEDEEYLVEAFLLLQKSM 114
Query: 119 LEKQWNLSFERTVLT---DSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQN 175
LEKQWNLSFE D K K+ VTCSG SARQRR++ +K+++++
Sbjct: 115 LEKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEK------- 167
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
++R+ + ++NRLKGYVKGVVSEELLTHA+VV LS KIK GL L+DHK RLKER+
Sbjct: 168 SKSRVRAALG---VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERI 224
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
G EP+ EQ+AASLR+SR ELQS L+ECSLAREKL MSNVRLVMSIAQRYDNMGA+MADLV
Sbjct: 225 GSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 284
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355
QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERL LIRN
Sbjct: 285 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRN 344
Query: 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
AK+RLEEKG+TPS+DRIAE LNMSQKKVRNATEAI KVFSLDREAFPSLNGLPGET H
Sbjct: 345 AKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLH 402
>gi|297737220|emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/415 (69%), Positives = 331/415 (79%), Gaps = 28/415 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59
MM TAAVIGLSAG RLL+SS +YSD++EK S Y+ND+G + KN+++AKK SNY
Sbjct: 72 MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 131
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFA-STAEPWAEPPNSIEEESSELDYSVEALLLLQKSM 118
PS SNR Q +KALKEHV++ A STA+P +S E + +Y VEA LLLQKSM
Sbjct: 132 PS---SNRSIQSMKALKEHVESASAPSTADP---DLSSSSSEVEDEEYLVEAFLLLQKSM 185
Query: 119 LEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSK 178
LEKQWNLSF K K+ VTCSG SARQRR++ +K+++++
Sbjct: 186 LEKQWNLSF----------KARQKRREVTCSGTSARQRRISGRKRVMNEK-------SKS 228
Query: 179 QLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE 238
++R+ + ++NRLKGYVKGVVSEELLTHA+VV LS KIK GL L+DHK RLKER+G E
Sbjct: 229 RVRAALG---VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSE 285
Query: 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 298
P+ EQ+AASLR+SR ELQS L+ECSLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQGG
Sbjct: 286 PTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 345
Query: 299 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKL 358
LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERL LIRNAK+
Sbjct: 346 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKI 405
Query: 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
RLEEKG+TPS+DRIAE LNMSQKKVRNATEAI KVFSLDREAFPSLNGLPGET H
Sbjct: 406 RLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLH 460
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/410 (66%), Positives = 326/410 (79%), Gaps = 7/410 (1%)
Query: 6 AVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSS 65
A+IGLSAG R+LSSSFYYS ++EKF ++D S KNV+ AK SSNY+PS+ S
Sbjct: 3 AIIGLSAGNRILSSSFYYSVLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSYVS- 60
Query: 66 NRQTQPIKALKEHVD--TNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQW 123
NR+ Q +KALKEHVD +N S EPW + ++ S + SVE LLLLQKSMLEKQW
Sbjct: 61 NRKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQW 120
Query: 124 NLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSM 183
NLS E+ + ++ KK K+ +TCSG SAR+RR++++K+ L S + SK+LRS+
Sbjct: 121 NLSAEKAMTNENNCKK---KMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRSV 177
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
I PEL+QNR KGY+ GVV +ELLTH EVV+LSKKIK GL L++ K RLKERLGCEPS +Q
Sbjct: 178 IGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQ 237
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
LA SL+ISR +L+S L+ECSLAREKL MSNVRLVMSIAQRYD G +MADL+QGGLIGLL
Sbjct: 238 LAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLL 297
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
RGIEKFD S+GFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAK++L+E
Sbjct: 298 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKEN 357
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
G+TPS+++IAE LNMSQKKVRNATEA KVFSLDREAFPSLNGLPGET H
Sbjct: 358 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLH 407
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 212/421 (50%), Positives = 285/421 (67%), Gaps = 28/421 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
M AT AVIGLSAG RLL++SF ++++ +Y S + K V A ++S
Sbjct: 1 MTATPAVIGLSAGNRLLATSFGSAELASPDAY----PSRQFAAAAPKLTVVAHRASASAS 56
Query: 61 SFP----SSNRQTQPIKALKEH--VDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLL 114
S + + + I+AL+ H A+P E + E ESS +EA++LL
Sbjct: 57 SPANIGGAGHARAHAIRALRNHSAPALAPPPPADPAPELDSKFEFESS-----LEAIVLL 111
Query: 115 QKSMLEKQWNLSFERTVL-TDSPSKKTHKKVPVTCSGVSARQRRLNSKKK-ILSQNKSIL 172
Q+SMLEKQW L FE + T+ + V V SGVSARQRR++ +++ + KS+
Sbjct: 112 QRSMLEKQWELPFEDDISSTEDEDEDERSTVVVARSGVSARQRRMSGRRRGAVVGRKSV- 170
Query: 173 QQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLK 232
+SPEL+Q+R + Y++G VS++LLTH +VV+LS+KIK G+ L + +LK
Sbjct: 171 ----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLK 220
Query: 233 ERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA 292
E+LG EPS +QLA SLRI PEL++ + E LARE L MSN RLV+SIAQ+YDN+G ++
Sbjct: 221 EKLGNEPSYKQLAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELP 280
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 352
DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NSR+ RLP +LHERL
Sbjct: 281 DLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVA 340
Query: 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETH 412
IR AK LE++G+ P+V+ IAE LN+S+KKV NATEA+ KV SLD++AFPSLNGLPG+T
Sbjct: 341 IRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVHKVISLDQQAFPSLNGLPGDTL 400
Query: 413 H 413
H
Sbjct: 401 H 401
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 212/423 (50%), Positives = 287/423 (67%), Gaps = 28/423 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
M AT A+IGLSAGKRLL++SF +D++ ++ S + K V A ++S +
Sbjct: 1 MTATPAMIGLSAGKRLLATSFGNTDLAPPDAH----PSLQFAPAAPKLTVVAHRASASSS 56
Query: 61 SF---PSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSI-------EEESSELDYSVEA 110
S P+ + + I+AL+ H A PP + E EL+ S+EA
Sbjct: 57 SSSSSPAGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEA 116
Query: 111 LLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKS 170
++LLQ+SMLEKQW L FE + + T V V SGVSARQRR++ +++ KS
Sbjct: 117 IVLLQRSMLEKQWQLPFEDE--DEDDERLTKAAVVVARSGVSARQRRMSGRRRG-PGRKS 173
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+ +SPEL+Q+R + Y++G VS++LLTH +V++LS+KIK G+ L + +
Sbjct: 174 V-----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSK 222
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LKE+LG EPS +QLA SL IS PEL++ + E LARE L MSN+RLV+SIAQ+YDN+G +
Sbjct: 223 LKEKLGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVE 282
Query: 291 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+ RLP +LHERL
Sbjct: 283 LADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERL 342
Query: 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
IR AK LE++G+ P+V+ IAE LN+S+KKV NATEA+ KV SLD++AFPSLNGLPG+
Sbjct: 343 IAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGD 402
Query: 411 THH 413
T H
Sbjct: 403 TLH 405
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 214/434 (49%), Positives = 284/434 (65%), Gaps = 30/434 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDI-SEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59
M AT AVIGLSAG RLLS+SF +D+ +K S G G + ++ +
Sbjct: 1 MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPAT 60
Query: 60 PSFP---------SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEE-----ESSELD 105
P S + + Q ++AL+ H A P PP + + +L+
Sbjct: 61 PKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLE 120
Query: 106 YSVEALLLLQKSMLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQRRLN 159
S+EA++LLQ+SMLEKQW L F+ L + + V V S VSARQRR++
Sbjct: 121 SSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMS 180
Query: 160 SKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIK 219
+++ ++N G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK
Sbjct: 181 GRRRGRTKN-------GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIK 231
Query: 220 TGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279
G+ L + +LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+S
Sbjct: 232 DGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVIS 291
Query: 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339
IAQ+YDN+G ++ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T
Sbjct: 292 IAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT 351
Query: 340 LRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDRE 399
RLP +LHERL IR AK LE++G+ P+++ IA LN+S+KKV NATEA+ KV SLD++
Sbjct: 352 FRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQ 411
Query: 400 AFPSLNGLPGETHH 413
AFPSLNGLPGET H
Sbjct: 412 AFPSLNGLPGETLH 425
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 212/423 (50%), Positives = 287/423 (67%), Gaps = 28/423 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
M AT A+IGLSAGKRLL++SF +D++ ++ S + K V A ++S +
Sbjct: 1 MTATPAMIGLSAGKRLLATSFGNTDLAPPDAH----PSLQFAPAAPKLTVVAHRASASSS 56
Query: 61 SF---PSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSI-------EEESSELDYSVEA 110
S P+ + + I+AL+ H A PP + E EL+ S+EA
Sbjct: 57 SSSSSPAGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEA 116
Query: 111 LLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKS 170
++LLQ+SMLEKQW L FE + + T V V SGVSARQRR++ +++ KS
Sbjct: 117 IVLLQRSMLEKQWQLPFEDE--DEDDERLTKAAVVVARSGVSARQRRMSGRRRG-PGRKS 173
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+ +SPEL+Q+R + Y++G VS++LLTH +V++LS+KIK G+ L + +
Sbjct: 174 V-----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSK 222
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LKE+LG EPS +QLA SL IS PEL++ + E LARE L MSN+RLV+SIAQ+YDN+G +
Sbjct: 223 LKEKLGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVE 282
Query: 291 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+ RLP +LHERL
Sbjct: 283 LADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERL 342
Query: 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
IR AK LE++G+ P+V+ IAE LN+S+KKV NATEA+ KV SLD++AFPSLNGLPG+
Sbjct: 343 IAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGD 402
Query: 411 THH 413
T H
Sbjct: 403 TLH 405
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 215/437 (49%), Positives = 286/437 (65%), Gaps = 37/437 (8%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDI-SEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59
M AT AVIGLSAG RLLS+SF +D+ +K S G G + ++ +
Sbjct: 1 MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAAA---- 56
Query: 60 PSFP------------SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEE-----ESS 102
P+ P S + + Q ++AL+ H A P PP + +
Sbjct: 57 PATPKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAH 116
Query: 103 ELDYSVEALLLLQKSMLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQR 156
+L+ S+EA++LLQ+SMLEKQW L F+ L + + V V S VSARQR
Sbjct: 117 DLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQR 176
Query: 157 RLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSK 216
R++ +++ ++N G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS
Sbjct: 177 RMSGRRRGRTKN-------GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSH 227
Query: 217 KIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276
KIK G+ L + +LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RL
Sbjct: 228 KIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRL 287
Query: 277 VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336
V+SIAQ+YDN+G ++ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL EN
Sbjct: 288 VISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAEN 347
Query: 337 SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396
S+T RLP +LHERL IR AK LE++G+ P+++ IA LN+S+KKV NATEA+ KV SL
Sbjct: 348 SKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSL 407
Query: 397 DREAFPSLNGLPGETHH 413
D++AFPSLNGLPGET H
Sbjct: 408 DQQAFPSLNGLPGETLH 424
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 182/315 (57%), Positives = 241/315 (76%), Gaps = 15/315 (4%)
Query: 102 SELDYSVEALLLLQKSMLEKQWNLSFERTVLT--DSPSKKTHKKVPVTC-SGVSARQRRL 158
SE + S+EA++LLQ+SMLEKQW L FE +++ D + K V SGVSARQRR+
Sbjct: 107 SEFESSLEAIVLLQRSMLEKQWELPFEDDIISTDDEQDDRVSKATVVAARSGVSARQRRM 166
Query: 159 NSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKI 218
+ +++ + KS+ ISPEL+Q+R + Y++G VS++LLTH +V++LS+KI
Sbjct: 167 SGRRR-GAGRKSV-----------AISPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKI 214
Query: 219 KTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVM 278
K G+ L + +LKE+LG EPS +QLA SLRIS PEL++ + E LARE L MSN+RLV+
Sbjct: 215 KDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVI 274
Query: 279 SIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 338
SIA +YDN+G D+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+
Sbjct: 275 SIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSK 334
Query: 339 TLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
T RLP +LHERL IR AK LE++G+ P+++ IAE LN+S+KKV NATEA+ KV SLD+
Sbjct: 335 TFRLPTYLHERLIAIRGAKYALEDQGIAPTIENIAESLNISEKKVHNATEAVNKVLSLDQ 394
Query: 399 EAFPSLNGLPGETHH 413
+AFPSLNGLPG+T H
Sbjct: 395 QAFPSLNGLPGDTLH 409
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 270/430 (62%), Gaps = 36/430 (8%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGS--ANSQVGSTKNVVAAKKSSNY 58
M AT ++IGLSAG RLLS+SF NDL S NS + S S +
Sbjct: 1 MTATPSLIGLSAGNRLLSTSF---------GPPNDLLSDKVNSHMTSAAGDAHGSSSLQF 51
Query: 59 NPSFPSSNRQTQPIKALK--EHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQK 116
P P++++ T LK H A P ++ ++S++A++LLQ+
Sbjct: 52 AP--PAASKLTVAAHRLKLSPHGRAQVMRALRQSALAPQPPPLLLAD-EFSLDAIILLQR 108
Query: 117 SMLEKQWNLSFERTVLTDSP-------------SKKTHKKVPVTCSGVSARQRRLNSKKK 163
SMLEKQW L FE K V V SGVSA +++
Sbjct: 109 SMLEKQWKLPFEDDDGGGDGHHGDDIDSAEDDDGKSRSSSVVVARSGVSA-------RQR 161
Query: 164 ILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223
+S + + GS + ISPEL+Q+R + Y++G VS+ELLTH +VV LSKKIK G+
Sbjct: 162 RMSGRRRGRSKKGSGAVHLSISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIW 221
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 283
L + +L E LG EPS +Q+A SLRIS PEL+S + E LARE L MSN+RLV+SIAQ+
Sbjct: 222 LQQQRSKLTEILGNEPSYKQMAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQK 281
Query: 284 YDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343
YD +G +++DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NSRT RLP
Sbjct: 282 YDKLGVELSDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSRTFRLP 341
Query: 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPS 403
++HERL IR AK LE++GV+P+ IAE LN+S+KKV NATEA+ K SLD++AFPS
Sbjct: 342 TYMHERLIAIRAAKYALEDQGVSPTTQNIAELLNISEKKVHNATEAVNKALSLDQQAFPS 401
Query: 404 LNGLPGETHH 413
LNGLPG+T H
Sbjct: 402 LNGLPGDTLH 411
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 206/430 (47%), Positives = 270/430 (62%), Gaps = 36/430 (8%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGS--ANSQVGSTKNVVAAKKSSNY 58
M AT ++IGLSAG RLLS+SF NDL S NS + S S +
Sbjct: 1 MTATPSLIGLSAGNRLLSTSF---------GPPNDLLSDKVNSHMTSAAGDAHGSSSLQF 51
Query: 59 NPSFPSSNRQTQPIKALK--EHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQK 116
P P++++ T LK H A P ++ ++S++A++LLQ+
Sbjct: 52 AP--PAASKLTVAAHRLKLSPHGRAQVMRALRQSALAPQPPPLLLAD-EFSLDAIILLQR 108
Query: 117 SMLEKQWNLSFERTVLTDSP-------------SKKTHKKVPVTCSGVSARQRRLNSKKK 163
SMLEKQW L FE K V V SGVSA +++
Sbjct: 109 SMLEKQWKLPFEDDDGGGDGHHGDDIDSAEDDDGKSRSSSVVVARSGVSA-------RQR 161
Query: 164 ILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223
+S + + GS + ISPEL+Q+R + Y++G VS+ELLTH +VV LSKKIK G+
Sbjct: 162 RMSGRRRGRSKKGSGAVHLSISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIW 221
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 283
L + +L E LG EPS +Q+A SLRIS PEL+S + E LARE L MSN+RLV+SIAQ+
Sbjct: 222 LQQQRSKLTEILGNEPSYKQMAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQK 281
Query: 284 YDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343
YD +G +++DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLP
Sbjct: 282 YDKLGVELSDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLP 341
Query: 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPS 403
++HERL IR AK LE++GV+P+ IAE LN+S+KKV NATEA+ K SLD++AFPS
Sbjct: 342 TYMHERLIAIRAAKYALEDQGVSPTTQNIAELLNISEKKVHNATEAVNKALSLDQQAFPS 401
Query: 404 LNGLPGETHH 413
LNGLPG+T H
Sbjct: 402 LNGLPGDTLH 411
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/312 (57%), Positives = 238/312 (76%), Gaps = 14/312 (4%)
Query: 103 ELDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKK 162
E + S+EA++LLQ+SMLEKQW L FE + T+ +++ V V SGVSARQRR++ ++
Sbjct: 5 EFESSLEAIVLLQRSMLEKQWELPFEDDISTEDEDERS--TVVVARSGVSARQRRMSGRR 62
Query: 163 K-ILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTG 221
+ KS+ +SPEL+Q+R + Y++G VS++LLTH +VV+LS+KIK G
Sbjct: 63 RGAFVGRKSV-----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDG 111
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
+ L + +LKE+LG EPS +QLA SLRI PEL++ + E LARE L MSN RLV+SIA
Sbjct: 112 IWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIA 171
Query: 282 QRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 341
Q+YDN+G ++ DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NSR+ R
Sbjct: 172 QKYDNLGVELPDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSRSFR 231
Query: 342 LPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAF 401
LP +LHERL IR AK LE++G+ P+V+ IAE LN+S+KKV NATEA+ KV SLD++AF
Sbjct: 232 LPTYLHERLVAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVHKVISLDQQAF 291
Query: 402 PSLNGLPGETHH 413
PSLNGLPG+T H
Sbjct: 292 PSLNGLPGDTLH 303
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 176/325 (54%), Positives = 230/325 (70%), Gaps = 23/325 (7%)
Query: 105 DYSVEALLLLQKSMLEKQWNLSFERTVLT----------------DSPSKKTHKKVPVTC 148
++S++A++LLQ+SMLEKQW L FE D K V V
Sbjct: 49 EFSLDAIILLQRSMLEKQWQLPFEEEDDDDGGGDGHHVEAIGSAEDDDGKGRSSSVVVAR 108
Query: 149 SGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTH 208
SGVSA +++ +S + + GS + ISPEL+Q+R + Y++G VS+ELLT
Sbjct: 109 SGVSA-------RQRRMSGRRRGRSKKGSGAVHLSISPELLQSRNRIYLRGTVSKELLTQ 161
Query: 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268
+VV LSKKIK G+ L + +LKE+LG EPS +Q+A SLRIS PEL+S + E LARE
Sbjct: 162 KQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPELRSRMRESFLAREV 221
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQG 328
L MSN+RLV+SIAQ+YD +G +++DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQG
Sbjct: 222 LTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQG 281
Query: 329 VSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATE 388
VSRAL +NS+T RLP +LHERL IR AK LE++GV+P+ IA+ LN+S+KKV NATE
Sbjct: 282 VSRALADNSKTFRLPTYLHERLIAIRGAKYALEDQGVSPTTQNIAKLLNISEKKVHNATE 341
Query: 389 AIGKVFSLDREAFPSLNGLPGETHH 413
A+ K SLD++AFPSLNGLPG+T H
Sbjct: 342 AVNKALSLDQQAFPSLNGLPGDTLH 366
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 209/442 (47%), Positives = 283/442 (64%), Gaps = 35/442 (7%)
Query: 1 MMATAAVIGLSAGKRLLSSSF---------------YYSDISEKFSYINDLGSANSQVGS 45
M AT AVIGLSAG RLL +SF Y + S + S++ Q G+
Sbjct: 1 MTATPAVIGLSAGNRLLGTSFGPPSGDLLCDKVSSHYLAGGDGSSSSSSSASSSSLQFGA 60
Query: 46 ---TKNVVAAKKSSNYNPSFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESS 102
+K VAA + S + + Q ++AL++ + A P P ++
Sbjct: 61 PAASKLTVAAHRLK------LSPHGRAQVMRALRQSAPAAVLALAPPPHPSPPPPAPAAA 114
Query: 103 ELDYSVEA--LLLLQKSMLEKQWNLSFERT--------VLTDSPSKKTHKKVPVTCSGVS 152
E + S+EA ++LLQ+SMLEKQW+L FE + V V SGVS
Sbjct: 115 EGELSLEATAIVLLQRSMLEKQWHLPFEDEDEDEEDDDAIGSGADAIGSAAVVVARSGVS 174
Query: 153 ARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELI-QNRLKGYVKGVVSEELLTHAEV 211
AR+RR++ +++ S + G +SP L+ Q+R + Y++G VS+ELLTH +V
Sbjct: 175 ARERRMSGRRRGRSSSSKAKSGGGGGAQLGGVSPSLLMQSRNRIYLRGSVSKELLTHKQV 234
Query: 212 VRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271
V+LSKKIK G+ L + +LKE+LG EPS +Q+A SLRIS PEL+S + + LARE L M
Sbjct: 235 VQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPELRSRMRDSFLAREVLTM 294
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 331
SN+RLV+SIAQ+YD +G ++ DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSR
Sbjct: 295 SNLRLVISIAQKYDKLGVELPDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSR 354
Query: 332 ALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391
AL +NS+T RLP +LHERL IR AK LE++G++P+ + IAE LN+S+KKV NAT+A+
Sbjct: 355 ALADNSKTFRLPTYLHERLIAIRGAKYALEDQGISPTTENIAESLNISEKKVHNATDAVN 414
Query: 392 KVFSLDREAFPSLNGLPGETHH 413
KV SLDR+AFPSLNGLPG+T H
Sbjct: 415 KVLSLDRQAFPSLNGLPGDTLH 436
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/305 (57%), Positives = 226/305 (74%), Gaps = 15/305 (4%)
Query: 115 QKSMLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQN 168
++SMLEKQW L F+ L + + V V S VSARQRR++ +++ ++N
Sbjct: 30 KRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSGRRRGRTKN 89
Query: 169 KSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHK 228
G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L +
Sbjct: 90 -------GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQR 140
Query: 229 LRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 288
+LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G
Sbjct: 141 SKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 200
Query: 289 ADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE 348
++ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLP +LHE
Sbjct: 201 VELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHE 260
Query: 349 RLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLP 408
RL IR AK LE++G+ P+++ IA LN+S+KKV NATEA+ KV SLD++AFPSLNGLP
Sbjct: 261 RLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLP 320
Query: 409 GETHH 413
GET H
Sbjct: 321 GETLH 325
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 223/302 (73%), Gaps = 15/302 (4%)
Query: 118 MLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171
MLEKQW L F+ L + + V V S VSARQRR++ +++ ++N
Sbjct: 1 MLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSGRRRGRTKN--- 57
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +L
Sbjct: 58 ----GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKL 111
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
KE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++
Sbjct: 112 KEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVEL 171
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLP +LHERL
Sbjct: 172 ADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLI 231
Query: 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGET 411
IR AK LE++G+ P+++ IA LN+S+KKV NATEA+ KV SLD++AFPSLNGLPGET
Sbjct: 232 AIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGET 291
Query: 412 HH 413
H
Sbjct: 292 LH 293
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 195/240 (81%), Gaps = 2/240 (0%)
Query: 174 QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+NG+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +LKE
Sbjct: 40 KNGAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKE 97
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++AD
Sbjct: 98 KLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELAD 157
Query: 294 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353
L+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLP +LHERL I
Sbjct: 158 LIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAI 217
Query: 354 RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
R AK LE++G+ P+++ IA LN+S+KKV NATEA+ KV SLD++AFPSLNGLPGET H
Sbjct: 218 RGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLH 277
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 195/240 (81%), Gaps = 2/240 (0%)
Query: 174 QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+NG+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +LKE
Sbjct: 10 KNGAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKE 67
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++AD
Sbjct: 68 KLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELAD 127
Query: 294 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353
L+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLP +LHERL I
Sbjct: 128 LIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAI 187
Query: 354 RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
R AK LE++G+ P+++ IA LN+S+KKV NATEA+ KV SLD++AFPSLNGLPGET H
Sbjct: 188 RGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLH 247
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 192/230 (83%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
ISPEL+Q+R + Y++G VS++LLTH +V++LS+KIK G+ L + +LKE+LG EPS +Q
Sbjct: 25 ISPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 84
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
LA SLRIS PEL++ + E LARE L MSN+RLV+SIA +YDN+G D+ADL+QGGLIGLL
Sbjct: 85 LAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLL 144
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLP +LHERL IR AK LE++
Sbjct: 145 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLLAIRGAKYALEDQ 204
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413
G+ P+++ IAE LN+S KKV NATEA+ KV SLD++AFPSLNGLPG+T H
Sbjct: 205 GIAPTIENIAESLNISVKKVHNATEAVHKVLSLDQQAFPSLNGLPGDTLH 254
>gi|346680879|gb|AEO45243.1| sigma factor [Nicotiana tabacum]
Length = 264
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 195/267 (73%), Gaps = 7/267 (2%)
Query: 6 AVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSS 65
A+IGLSAG R+LSSSFYYSD++EKF ++D S KNV+ AK SSNY+PS+ S
Sbjct: 3 AIIGLSAGNRILSSSFYYSDLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSY-VS 60
Query: 66 NRQTQPIKALKEHVD--TNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQW 123
NR+ Q +KALKEHVD +N S EPW + ++ S + SVE LLLLQKSMLEKQW
Sbjct: 61 NRKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQW 120
Query: 124 NLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSM 183
NLS E+ + ++ KK K+ TCSG SAR+RR++++K+ L S + +K+LRS+
Sbjct: 121 NLSAEKAMTNENNCKK---KMQTTCSGTSARRRRMDTRKRDLLPKNSATSDSSNKRLRSV 177
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
I PEL+QNR KGY+ GVV +ELLTH EVV+LSKKIK GL L++ K RLKERLGCEPS +Q
Sbjct: 178 IGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQ 237
Query: 244 LAASLRISRPELQSILMECSLAREKLV 270
LA SL+ISR +L+SIL+ECSLAREKL
Sbjct: 238 LAISLKISRADLRSILIECSLAREKLA 264
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 186/307 (60%), Gaps = 16/307 (5%)
Query: 113 LLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSIL 172
L++ + E ++ E V + SPS +T + + +RQRR+ K S + +
Sbjct: 282 LVEDACPESTSTMTTELVVKSGSPSARTRR--------LESRQRRVAIAGKPTSPDALTI 333
Query: 173 Q-----QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDH 227
Q G + R + + +Q+ L Y++ + LLT E V LSKK++ GL+L +
Sbjct: 334 HPLKKYQKGERVRR--VKFDGVQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEE 391
Query: 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM 287
+ +L LG PS E+ A + +S +L L E AR+K+VM+N+RLV+S+A++Y +
Sbjct: 392 RKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSF 451
Query: 288 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLH 347
G +MADL+Q G IGLLRG+EKFD ++G+K+STYV+WWIRQGV+RA+ ++SRT+RLP H+H
Sbjct: 452 GLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVH 511
Query: 348 ERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDRE-AFPSLNG 406
+ LG IR AK L +G T SV I+E N++ K++N + K+ SLD+E +L
Sbjct: 512 DTLGRIRKAKSTLLSEGCTASVQEISEATNLTGTKIKNTLQVTKKLVSLDKEIGRNTLQS 571
Query: 407 LPGETHH 413
GET H
Sbjct: 572 GDGETLH 578
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 196/349 (56%), Gaps = 36/349 (10%)
Query: 103 ELDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTH--------------------- 141
EL + +A L++S LE QW+L V P+ +
Sbjct: 129 ELSPAGDAATSLERSRLESQWSLFLSDAVDRPLPNLEGMGEDFGEEVVDVQEEDSANGLS 188
Query: 142 ---KKVPVTCSG-VSARQRRLNSKKKILS--QNKSILQQNGSKQLRSMIS---------P 186
K V V SG SAR RRL ++++ LS + S ++ LR S P
Sbjct: 189 DGLKAVKVISSGRPSARLRRLEARQRRLSGVEKPSPMEAFMIHPLRKTESSSKADKAKKP 248
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
E +Q+ L Y++ + + LT E + LSKKI+TG L + + + + LG + +Q A
Sbjct: 249 EGVQDYLSTYLRDITKIDRLTAEEEIMLSKKIRTGYILKEERKKFERALGHPITKDQWAG 308
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
+ ++ +L + L E LAR+++VM+N+RLV+S+ ++Y+ G ++ DL+Q G IGLL+G+
Sbjct: 309 HMHMAVGDLDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGLEVPDLIQEGSIGLLKGV 368
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVT 366
EKFD ++G+K+STYV+WWIRQGV+RA+ ++SRT+RLP H+H+ LG IR + R+ + G
Sbjct: 369 EKFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRRTRARMLQDGAP 428
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIH 415
+V +++ LN+S +V+NA + K+ SLD + + L G+T H
Sbjct: 429 ATVQTLSKALNLSDNQVKNALKVPKKLKSLDMQVGHQKSVLTGDTETFH 477
>gi|414878913|tpg|DAA56044.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878914|tpg|DAA56045.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878915|tpg|DAA56046.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
Length = 287
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 182/303 (60%), Gaps = 26/303 (8%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
M AT AVIGLSAG RLL++SF ++++ +Y S + K V A ++S
Sbjct: 1 MTATPAVIGLSAGNRLLATSFGSAELASPDAY----PSRQFAAAAPKLTVVAHRASASAS 56
Query: 61 SFP----SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESS-ELDYSVEALLLLQ 115
S + + + I+AL+ H A + E +S E + S+EA++LLQ
Sbjct: 57 SPANIGGAGHARAHAIRALRNHSAPALAPPPPA----DPAPELDSKFEFESSLEAIVLLQ 112
Query: 116 KSMLEKQWNLSFERTVL-TDSPSKKTHKKVPVTCSGVSARQRRLNSKKK-ILSQNKSILQ 173
+SMLEKQW L FE + T+ + V V SGVSARQRR++ +++ + KS+
Sbjct: 113 RSMLEKQWELPFEDDISSTEDEDEDERSTVVVARSGVSARQRRMSGRRRGAVVGRKSV-- 170
Query: 174 QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+SPEL+Q+R + Y++G VS++LLTH +VV+LS+KIK G+ L + +LKE
Sbjct: 171 ---------TVSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKE 221
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
+LG EPS +QLA SLRI PEL++ + E LARE L MSN RLV+SIAQ+YDN+G ++ D
Sbjct: 222 KLGNEPSYKQLAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPD 281
Query: 294 LVQ 296
L+Q
Sbjct: 282 LIQ 284
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ ++L+ K L E LG EP++ Q A + ++++
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+S + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 KELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L +EKG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ ++VR E + SLD
Sbjct: 191 LAEELELTPRQVREYLERARQPLSLD 216
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ ++L+ + + E G EP+ Q A + +ISR
Sbjct: 11 VRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQSI+ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 KELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ L ++KG +V
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVVE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR E + SLD
Sbjct: 191 LAEELDLTPKQVREYLERARQPLSLD 216
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + +LLTH E + +K+++ ++L K L+E+LG EP+ Q A ++S
Sbjct: 11 VRSYLKEIGRVDLLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL++ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 KELKTTLEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ K+VR+ E + SLD
Sbjct: 191 LAEELELTPKQVRDYLEKSRQPISLD 216
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ + ++ K L+++LG EP+ Q A + I+
Sbjct: 11 VRSYLKEIGRVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL++I+ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EELRNIIQAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++KG T ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTATISE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ K+VR E + SLD
Sbjct: 191 LAEELELTPKQVREYLEKSRQPISLD 216
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ ++L+ + + E G EP+ Q A + ++S+
Sbjct: 11 VRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSK 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E +SI+ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 REFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ L ++KG +V
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR E + SLD
Sbjct: 191 LAEELDLTPKQVREYLERARQPLSLD 216
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG +P++E+ A + ++
Sbjct: 11 VRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLES 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL I+ + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 TELNDIIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L +K G PS
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ K+VR E SLD
Sbjct: 191 LAEELELTTKQVREYLEKARLPLSLD 216
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + L+K+++ ++L D K L + L EP + A++ +I+
Sbjct: 11 VRAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKITE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + A+EK+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L + KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAATISE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ ++VR+ E + SLD
Sbjct: 191 LAEELELTPRQVRDYLERARQPLSLD 216
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E V S++++ ++L+ K L E EP++++ A + +I++
Sbjct: 11 VRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + + A++K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 KELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L +K G ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAATIPE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTTKQVRDYLEKSRQPLSLD 216
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ ++ + G EP+ Q A + RISR
Sbjct: 11 VRSYLREIGRVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL S + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 RELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ L + +G ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR E + SLD
Sbjct: 191 LAEELDLTPKQVREYLERARQPLSLD 216
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 137/209 (65%), Gaps = 1/209 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ +V LLTH E + SK+++ ++L + K LK++L EPS ++LA +++S
Sbjct: 20 VRNYLQDIVRVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ I + A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFDS+
Sbjct: 80 MEVKEIFQKGVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFDST 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWI QG++RA+ + SRT+RLP HL E+L ++ + L +K +PS+
Sbjct: 140 RGYKFSTYAYWWISQGMTRAISQQSRTIRLPIHLTEKLNKLKKVQRELSQKLNRSPSMFE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREA 400
IAE + ++ ++R + SLD++
Sbjct: 200 IAEKMQLNPAQIRELLMISRQPVSLDKQV 228
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E +R K+++ +L + + L +LG EP++E+ A ++
Sbjct: 25 VRTYLREIGRVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDI 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L + + +A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 85 ADLNDAIADGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L +K G PSV
Sbjct: 145 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSVGE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ K+VR E SLD
Sbjct: 205 LATELDLTPKQVREYLEKARLPLSLD 230
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 134/201 (66%), Gaps = 1/201 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + + ++ Y++ + LL+H + + L ++++ + L++ + K R G EPS E+LA
Sbjct: 10 PPVDGDLVRSYLRDIGRVPLLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELA 69
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+S IS L+ L+ A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG
Sbjct: 70 SSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRG 129
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKG 364
+EKFD ++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G
Sbjct: 130 VEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELG 189
Query: 365 VTPSVDRIAEYLNMSQKKVRN 385
TP+V +AE+L + + +V++
Sbjct: 190 RTPTVGELAEFLELPEPEVKD 210
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + V K+++ L+D K L RLG PS E+ A + ++S
Sbjct: 11 VRTYLREIGRVPLLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSS 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + E A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 AELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATAAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L+++ K+VR+ E + SLD
Sbjct: 191 LAQELDLTPKQVRDYLEQARQPLSLD 216
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 138/217 (63%), Gaps = 1/217 (0%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M + + + ++ Y++ + LLTH E + K+++ +L + + L +LG +P++
Sbjct: 14 AMKTAQTATDLVRTYLREIGRVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTL 73
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E+ AAS ++ EL + + E +A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG
Sbjct: 74 EEWAASAQVEPVELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIG 133
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
+ RG+EKFD +KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L
Sbjct: 134 MQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLS 193
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+K G P+ +A+ L ++ ++VR E SLD
Sbjct: 194 QKLGRAPTAIELADELELTPRQVRECLEKARLPLSLD 230
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K LK +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E V S++++ ++L+ K L E+ EPS+++ A + +S+
Sbjct: 11 VRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ L+ A++K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 RELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L + G + S+
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ K+VR+ E + SLD
Sbjct: 191 LADELGLTTKQVRDYLEKSRQPLSLD 216
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K L+ +LG EPS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K LK +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL+H E + +K+++ ++L+ + + + G EP+ Q A + ++SR
Sbjct: 11 VRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E S++ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 KEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL+H E + +K+++ ++L+ + + + G EP+ Q A + ++SR
Sbjct: 11 VRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E S++ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 KEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + L+K+++ ++L + K L + L EP + A + +IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + A+EK+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L +K G ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAATISE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ ++VR E + SLD
Sbjct: 191 LAQELELTPRQVREYLERARQPLSLD 216
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E V S++++ ++L+ K L E+ EPS+++ A + +S+
Sbjct: 11 VRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L+ A++K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 RQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L + G + S+
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ K+VR+ E + SLD
Sbjct: 191 LADELGLTTKQVRDYLEKSRQPLSLD 216
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K L+ +LG EPS Q + + IS
Sbjct: 11 VRSYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 135/216 (62%), Gaps = 1/216 (0%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + E+ ++ ++ Y++ + LLTH E V K+++ + L + L E+L +P+
Sbjct: 1 MRTKEIAKDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDA 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ +A+ ++S ELQ L E A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+
Sbjct: 61 EWSAAAKLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGM 120
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
RG+EKFD +KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ + +L +
Sbjct: 121 QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQ 180
Query: 363 K-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
K G ++ +A L+++ K+VR E + SLD
Sbjct: 181 KLGRAATISELATSLDLTTKQVREYLERARQPLSLD 216
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG EP++E+ A + ++
Sbjct: 11 VRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLEL 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 TELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G PSV
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSVAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ ++VR E SLD
Sbjct: 191 LAQELELTSRQVREYLEKARVPLSLD 216
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L + L +PS+E+ A + ++
Sbjct: 25 VRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL +L + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD S
Sbjct: 85 QELNRLLGQGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPS 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ L + G +PS+
Sbjct: 145 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRYLSQTLGRSPSIAE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ K+VR+ E SLD
Sbjct: 205 LAQELEITPKQVRDCLEKARLPLSLD 230
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E +R K+++ +L + + L +LG EPS+E+ A + I+
Sbjct: 25 VRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINS 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 85 ADLLGAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L ++ G P+
Sbjct: 145 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ K+VR E SLD
Sbjct: 205 LANELELTPKQVREYLEKARLPLSLD 230
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 136/217 (62%), Gaps = 1/217 (0%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M + + + ++ Y++ + LLTH E + K+++ +L + + L +LG +P++
Sbjct: 14 AMKTAQTATDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTL 73
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E+ A + ++ EL + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG
Sbjct: 74 EEWAKATKLEPVELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIG 133
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
+ RG+EKFD +KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L
Sbjct: 134 MQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLS 193
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+K G P+ +A+ L ++ K+VR E SLD
Sbjct: 194 QKLGRAPTAGELAQELELTPKQVREYLEKARLPLSLD 230
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L + L +PS+E+ A + ++
Sbjct: 25 VRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL +L + +A+ K+V +N+RL++S+A++Y D+ DL+Q G IG+ RG+EKFD S
Sbjct: 85 QELNRLLAQGEIAKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPS 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ L + G +PS+
Sbjct: 145 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRDLSQTLGRSPSIAE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ K+VR+ E SLD
Sbjct: 205 LAQELEITPKQVRDCLEKARLPLSLD 230
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 135/216 (62%), Gaps = 1/216 (0%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + E ++ ++ Y++ + LLTH + + K+++ + + L +RLG EP +
Sbjct: 1 MKTAETSKDLVRAYLREIGRVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLT 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ A + ++S ELQ ++ LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+
Sbjct: 61 EWATAAKLSEAELQGVVNRGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGM 120
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
RG+EKFD +KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L +
Sbjct: 121 QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQ 180
Query: 363 K-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ G ++ +A+ L ++ K+VR E + SLD
Sbjct: 181 QLGRAATIGELAQELELTPKQVREYLERSRQPLSLD 216
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERSRQPLSLD 216
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++KG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTPKQVRDYLERARQPLSLD 216
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 140/217 (64%), Gaps = 3/217 (1%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M+SP + ++ Y+K + LLT + + ++ ++ +++++ + L +L +P+
Sbjct: 1 MLSP--TTDSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDL 58
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+LA SL + ELQS++ + A++K+V +N+RLV+S+A++Y N D DL+Q G +GL
Sbjct: 59 ELATSLGQNEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGL 118
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
RGIEKFD +KG+K+STYVYWWI Q ++RA+ + SRT+RLP H++E+L IR + +L +
Sbjct: 119 QRGIEKFDPNKGYKLSTYVYWWITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQ 178
Query: 363 K-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
G P V IAE LN+S ++R + + SL++
Sbjct: 179 SLGRPPVVAEIAESLNLSPNQIREYLQISKPLVSLEK 215
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ +V LLTH E + SK+++ + L K LK++L EPS ++LA +++S
Sbjct: 15 VRNYLQDIVRVPLLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSE 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ I + + A++K++++N+RLV++IA++Y ++ DL+Q G +GL RG+EKFD +
Sbjct: 75 IEVKDIFQQGTQAKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFDPT 134
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWI Q ++RA+ + SRT+RLP H+ E+L + + L +K +PS D
Sbjct: 135 RGYKFSTYAYWWISQAMTRAISQQSRTIRLPIHITEKLNKFKKVQRELSQKLKRSPSADE 194
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREA 400
IAE + ++ ++R + SLD++
Sbjct: 195 IAEKMKLNPAQIRELLMISRQPASLDKQV 223
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 134/216 (62%), Gaps = 1/216 (0%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + E+ ++ ++ Y++ + LLTH E V K+++ + L + L E+L +P+
Sbjct: 1 MRTKEIAKDSVRSYLREIGRVPLLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDA 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ + + ++S ELQ L E A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+
Sbjct: 61 EWSVAAQLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGM 120
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
RG+EKFD +KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ + +L +
Sbjct: 121 QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQ 180
Query: 363 K-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
K G ++ +A L+++ K+VR E + SLD
Sbjct: 181 KLGRAATISELATALDLTTKQVREYLERARQPLSLD 216
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E +R K+++ +L + + L +L +P++E+ AA+ +I
Sbjct: 11 VRTYLREIGRVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIEL 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + E A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 VELNEAIAEGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L +K G P+
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTATE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ K+V+ E SLD
Sbjct: 191 LAQELELTPKQVQECLEKARLPLSLD 216
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 132/194 (68%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + ++ + L+ R G +P+ +QLA + +S
Sbjct: 25 VRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELST 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L + A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 85 VQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 145 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTE 204
Query: 372 IAEYLNMSQKKVRN 385
+A+++++ + +V++
Sbjct: 205 LAQFVDLPEDEVKD 218
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L D K L + LG EP++E+ A + +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSP 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL S + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 SELNSHINAGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ L + G +V
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLGRAATVGE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L+++ K+VR E + SLD
Sbjct: 191 LAQELDLTPKQVREYLERARQPLSLD 216
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 132/194 (68%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + ++ + L+ R G +P+ +QLA + +S
Sbjct: 25 VRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELST 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L + A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 85 VQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 145 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTE 204
Query: 372 IAEYLNMSQKKVRN 385
+A+++++ + +V++
Sbjct: 205 LAQFVDLPEDEVKD 218
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 136/217 (62%), Gaps = 1/217 (0%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M + + + ++ Y++ + LLTH E + K+++ +L + + L +LG +P++
Sbjct: 31 AMKTAQTATDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNL 90
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E+ AA+ ++ L + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG
Sbjct: 91 EEWAAATKLETTALNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIG 150
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
+ RG+EKFD +KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L
Sbjct: 151 MQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLS 210
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
++ G P+ +A+ L ++ K+VR E SLD
Sbjct: 211 QQLGRAPTAAELAQELELTPKQVREYLEKARLPLSLD 247
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++LG EP+ Q A + +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 72 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 131
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +++
Sbjct: 132 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNE 191
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ K++R E SLD
Sbjct: 192 LAAELDLTPKQIREYLEKSRLPLSLD 217
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++LG EP+ Q A + +S
Sbjct: 24 VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 84 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 143
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +++
Sbjct: 144 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNE 203
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ K++R E SLD
Sbjct: 204 LAAELDLTPKQIREYLEKSRLPLSLD 229
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++LG EP+ Q A + +S
Sbjct: 24 VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 84 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 143
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +++
Sbjct: 144 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNE 203
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ K++R E SLD
Sbjct: 204 LAAELDLTPKQIREYLEKSRLPLSLD 229
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 133/193 (68%), Gaps = 1/193 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + + L ++++ + + + + +L+ + G +P+ E+LA SL +S
Sbjct: 15 VRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSI 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+++ ++ A+E++V SN+RLV+SIA++Y ++ DLVQ G IGL+RG+EKFD +
Sbjct: 75 NQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPT 134
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ A+ L + G TP+V
Sbjct: 135 RGYKFSTYAYWWIRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLSQSLGRTPTVIE 194
Query: 372 IAEYLNMSQKKVR 384
+A+ + +++K+V+
Sbjct: 195 LAKMIKLTEKEVK 207
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG EP++E+ AA+ I
Sbjct: 11 VRTYLREIGRVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 SELNQAIAVGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L + G P+V
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQGLGRAPTVAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+++ L+++ K+VR E SLD
Sbjct: 191 LSQELDLTPKQVREYLEKARLPLSLD 216
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 133/209 (63%), Gaps = 2/209 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLR 249
+ ++ Y++ + LLTH E + +K+I+ +SL++ K L E EP S + A +
Sbjct: 8 DSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAAD 67
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S EL+ + E A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKF
Sbjct: 68 LSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D +KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L +EKG S
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAAS 187
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ +AE+L ++ K+VR E SLD
Sbjct: 188 IAELAEHLELTPKQVREYLERSRHPLSLD 216
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E +R K+++ +L + + L + G EPS+E+ A + ++
Sbjct: 25 VRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 85 ADLLEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L ++ G P+
Sbjct: 145 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ K+VR E SLD
Sbjct: 205 LANELELTPKQVREYLEKARLPLSLD 230
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 135/217 (62%), Gaps = 1/217 (0%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M + + + ++ Y++ + LLTH E ++ K+++ L + + L ++G EPS+
Sbjct: 14 AMKTAQTATDLVRTYLREIGRVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSL 73
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E+ A + + EL + + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG
Sbjct: 74 EEWALAANLEVAELNDAIADGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIG 133
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
+ RG+EKFD +KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L
Sbjct: 134 MQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLS 193
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
++ G PS +A+ L+++ K+VR E SLD
Sbjct: 194 QQLGRAPSAAELAQELDLTPKQVREYLERARLPLSLD 230
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 129/194 (66%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + L+ + LK + G +PS +QLA + +S
Sbjct: 28 VRSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSS 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 88 IQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 147
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 148 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTE 207
Query: 372 IAEYLNMSQKKVRN 385
+AE++ + + V++
Sbjct: 208 LAEFVELPEDDVKD 221
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 133/210 (63%), Gaps = 8/210 (3%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR------ 249
Y++ + LL E V L+++++ + L D +LRL++ LG EP++ + AA
Sbjct: 49 YLQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWA 108
Query: 250 -ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
++ +LQ I A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EK
Sbjct: 109 NLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEK 168
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTP 367
FD KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ +L +EKG TP
Sbjct: 169 FDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTP 228
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+++ IA L M+ +VR + + SL+
Sbjct: 229 TIEDIASELEMTVPQVRELLVRVPRSVSLE 258
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 127/203 (62%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL+H E + K+++ +L + L E LG EP++ + A + +S+ EL
Sbjct: 15 YLREIGRVPLLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSEL 74
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q I+ E A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +KG+
Sbjct: 75 QRIIREGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGY 134
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ + +L ++ G + + IAE
Sbjct: 135 RFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAE 194
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L ++ K++R E SLD
Sbjct: 195 ELGLTPKQIRECLERARLPLSLD 217
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L+ K L E+LG EP++ + A + +S
Sbjct: 23 VRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSE 82
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQS + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 83 AELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 142
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L + G ++
Sbjct: 143 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISE 202
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ K+VR E + SLD
Sbjct: 203 LATELDLTPKQVREYLEKARQPLSLD 228
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 134/208 (64%), Gaps = 2/208 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+E+L EP+ + A+ ++S
Sbjct: 132 VRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSD 191
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+ ++IL A+E++V +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS
Sbjct: 192 VKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDS 251
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVD 370
KGFK STY WW++Q V+RA+ ++SRT+RLP HL++ + IR L E G +P+ +
Sbjct: 252 EKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEE 311
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDR 398
IAE ++MS +K+R+ ++ SL+R
Sbjct: 312 EIAEKMDMSVEKLRSVLQSAQPTLSLER 339
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 134/208 (64%), Gaps = 2/208 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+E+L EP+ + A+ ++S
Sbjct: 135 VRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSD 194
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+ ++IL A+E++V +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS
Sbjct: 195 VKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDS 254
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVD 370
KGFK STY WW++Q V+RA+ ++SRT+RLP HL++ + IR L E G +P+ +
Sbjct: 255 EKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEE 314
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDR 398
IAE ++MS +K+R+ ++ SL+R
Sbjct: 315 EIAEKMDMSVEKLRSVLQSAQPTLSLER 342
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 126/208 (60%), Gaps = 1/208 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y++ + LLTH + + K+++ ++L K L LG EP+ Q A + +
Sbjct: 9 DTVRAYLREIGRVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACEL 68
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
ELQ + LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 69 EEQELQQAIATAELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFD 128
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
+KG++ STY YWWIRQ ++RA+ E +R +RLP H+ E+L I+ A+ L +K G +V
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAATV 188
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ +VR E + SLD
Sbjct: 189 TELAEELELTPPQVREYLERARQPLSLD 216
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++L EP+ Q A + +S
Sbjct: 24 VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSV 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 84 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 143
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +++
Sbjct: 144 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNE 203
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ K++R E SLD
Sbjct: 204 LAAELDLTPKQIREYLEKSRLPLSLD 229
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 134/208 (64%), Gaps = 2/208 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+E+L EP+ + A+ ++S
Sbjct: 132 VRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSD 191
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+ +SIL A+E++V +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS
Sbjct: 192 VKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDS 251
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVD 370
KGFK STY WW++Q V+RA+ ++SRT+RLP HL++ + IR L E G +P+ +
Sbjct: 252 EKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEE 311
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDR 398
IAE ++MS +K+R+ ++ SL+R
Sbjct: 312 EIAEKMDMSVEKLRSVLQSAQPTLSLER 339
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 133/210 (63%), Gaps = 8/210 (3%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL------- 248
Y++ + LL E V L++K++ + L D +LRL++ LG +P++ + A
Sbjct: 51 YLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWA 110
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
+++ +LQ I A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EK
Sbjct: 111 QLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEK 170
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTP 367
FD KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ +L +EKG TP
Sbjct: 171 FDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTP 230
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+++ IA L M+ +VR + + SL+
Sbjct: 231 TIEDIASELEMTPPQVRELLVRVPRSVSLE 260
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E ++ K+++ + L++ + L +LG EP++E+ A + +
Sbjct: 11 VRTYLREIGKVPLLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEP 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 LELNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L +K G PS
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L+++ +VR E SLD
Sbjct: 191 LAKELDLTPAQVREYLEKARLPLSLD 216
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ SL + + L +L +P++E+ A + +
Sbjct: 11 VRSYLREIGRVPLLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDI 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 AELNEAIADGEFAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ A+ +L ++ G PS
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ K+VR E SLD
Sbjct: 191 LASELELTPKQVREYLEKARLPLSLD 216
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E G +PS+E+L++ L +S
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNLSI 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
P ++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 97 PIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 156
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP+V
Sbjct: 157 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSE 216
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + ++ V++ G+ SL+
Sbjct: 217 LAKYVELPEEDVKDLMCKAGQPVSLE 242
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 134/208 (64%), Gaps = 2/208 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+++L EP+ + A+ ++S
Sbjct: 115 VRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSD 174
Query: 253 P-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+ +SIL A+E++V +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS
Sbjct: 175 VRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDS 234
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVD 370
KGFK STY WW++Q V+RA+ ++SRT+RLP HL++ + IR L E G +P+ +
Sbjct: 235 EKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEE 294
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDR 398
IA+ ++MS +K+RN ++ SL+R
Sbjct: 295 EIAKRMDMSVEKLRNVLQSAQPTLSLER 322
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 128/196 (65%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
Q+ ++ Y++ + +LLT +E + L++ I+ L ++ K L+E++G EP++ + A ++
Sbjct: 302 QDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVG 361
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
R L+S + ++++V SN+RLV+SIA+RY G + DL+Q G +GL+RG EKF
Sbjct: 362 TERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKF 421
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D ++GFK STY +WWIRQ ++RA+ + SRT+RLP H++E L I AK L E G P
Sbjct: 422 DHTRGFKFSTYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPR 481
Query: 369 VDRIAEYLNMSQKKVR 384
+ +AE + +S +K++
Sbjct: 482 DEEVAELVGLSIEKLK 497
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 133/216 (61%), Gaps = 1/216 (0%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + + + ++ Y++ + LLTH + + K+++ +L + L +LG EP++E
Sbjct: 1 MKTAQTTTDLVRTYLREIGRVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLE 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ + + RI + L + + E +A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+
Sbjct: 61 EWSEAARIDKTALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGM 120
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
RG+EKFD +KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L +
Sbjct: 121 QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQ 180
Query: 363 K-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G PS+ +A L ++ K+VR E SLD
Sbjct: 181 NLGRAPSIVELATALELTPKQVREYLERARLPLSLD 216
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 11/227 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L +L EP++E+ AAS +
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLES 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 AELSKAIALGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +V
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATVSE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFP-SLNGLPGETHHIHCG 417
+A L +S K+VR L+R P SL+ G+ H G
Sbjct: 191 LAAELELSPKQVRE---------YLERARLPLSLDLRVGDNHDTELG 228
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 133/211 (63%), Gaps = 7/211 (3%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LLT E + +K I+ ++L+ K L ++L EP++ + A + +I
Sbjct: 9 DTIRVYLKEIGRIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKI 68
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S LQ + + A+ ++V +N+RLV+SIA++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 69 SEKNLQIKITQGEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSV 369
+KG++ STY YWWIRQ ++RA+ E SR +RLP H+ E+L IR + +L EEKG ++
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATI 188
Query: 370 DRIAEYLNMSQKKVRNATEAIGKV---FSLD 397
+AE L +S ++VR E +GK SLD
Sbjct: 189 AELAEALELSTEQVR---EYLGKARQPLSLD 216
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 129/206 (62%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ SL++ + L+ LG EPS+E+ A+ +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSP 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL I+ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 GELNEIIQGGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L + G +++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATINE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ +VR E + SLD
Sbjct: 191 LAVELELTPAQVREYLERARQPLSLD 216
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 129/206 (62%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + K +L +RLG EPS + A + +S
Sbjct: 12 VRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSL 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ L + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 72 KELKQALEDGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 131
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ L ++ G ++
Sbjct: 132 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRSLAQDLGRAATIAE 191
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L+++ K++R E SLD
Sbjct: 192 LADELDLNPKQIREYLERARLPLSLD 217
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLTH E + L K+++ +SL L + L EP+ + AA+ IS EL +I+
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD SKG++ STY YWW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ E SRT+RLP H+ E+L I+ A+ + ++ G TP+ IA+ + K+V
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQV 182
Query: 384 RNATEAIGKVFSLD 397
R + + SLD
Sbjct: 183 REYLDRSRQPLSLD 196
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 133/212 (62%), Gaps = 3/212 (1%)
Query: 189 IQNR--LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
IQN ++ Y+K + LLTH E + L K+++ L+ + L E L P+ + AA
Sbjct: 4 IQNTDLVRTYLKEIGRVPLLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAA 63
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
++ +S +L +I+ A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+
Sbjct: 64 AVNLSEGQLLTIVRAGDTAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGV 123
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GV 365
EKFD +KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L ++ G
Sbjct: 124 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQQYGR 183
Query: 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+V +A L ++ K+VR+ E + SLD
Sbjct: 184 AATVMELAAELELTPKQVRDYLEKARQPLSLD 215
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 129/206 (62%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + V K+++ ++L ++ +L+ L EPS + A + IS
Sbjct: 11 VRTYLKEIGRVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + LA+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 71 DELTQAMDAGDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPL 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L +K G +V
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQKLGRAATVAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE + ++ K+VR+ E SLD
Sbjct: 191 LAEEVKLTPKQVRDYLEKSRSPLSLD 216
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 129/194 (66%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + ++ + L+ R G +PS ++LA + ++
Sbjct: 25 VRSYLRDIGRVPLLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 85 LQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP++
Sbjct: 145 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTITE 204
Query: 372 IAEYLNMSQKKVRN 385
+A+Y+ + + V++
Sbjct: 205 LAQYVELPEDDVKD 218
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E +PS+E+LAA L +S
Sbjct: 26 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNLSS 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 86 SQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP++
Sbjct: 146 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTISE 205
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + + V++ G+ SL+
Sbjct: 206 LAKYVELPEDDVKDLMCKAGQPVSLE 231
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 123/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L+ +GCEP+ E+ A +
Sbjct: 82 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVD 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 142 MPLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 201
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 202 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPT 261
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 262 EEEIAERMEMTIEKLR 277
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + ++++ +++++HK +L ++L EP++ +LA + S
Sbjct: 2 VRVYLQEIGQFPLLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSE 61
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+ IL + A++K++ +N+RLV+S+A++Y + + DLVQ G IGL RGIEKFD +
Sbjct: 62 TEVNQILQQGQRAKQKMITANLRLVVSVAKKYQHRNLEFLDLVQEGAIGLQRGIEKFDPN 121
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K+STY YWWI Q ++RA+ E SRT+RLP H++E+L I+ A+ L + +V
Sbjct: 122 RGYKLSTYAYWWISQAITRAIAEKSRTVRLPVHVNEKLNQIKKAQRELFQTLNRRATVTE 181
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ LN+ ++R SLD
Sbjct: 182 IAQKLNLEPSQIREYLSVASGTISLD 207
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E + L+K+I+ ++L+ + LK++L EPS ++ A + +IS
Sbjct: 11 IRVYLKEIGRIPLLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L + A+ K+V +N+RLV+SIA++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 71 KNLDIKISRGEKAKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPK 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SR +RLP H+ E+L IR + +L EEKG ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
++E L ++ ++VR+ + SLD
Sbjct: 191 LSEALELTTEQVRDYLGKARQPLSLD 216
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + V K+++ ++++ + +L L EP+ + AA+ IS
Sbjct: 8 VRTYLREIGRVPLLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISE 67
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL++I+ A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 68 GELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 127
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +++
Sbjct: 128 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINE 187
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ +VR E + SLD
Sbjct: 188 LAAELELTPAQVREYLERARQPLSLD 213
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 136/208 (65%), Gaps = 2/208 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + +LL E ++L+++I L + K+ LKE+LG EP+ + +A+ +IS
Sbjct: 86 VRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISD 145
Query: 253 PE-LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+ +++L A+E+++ +N+RLV+SIA+RY N G + DLVQ G +GL+R EKFDS
Sbjct: 146 VQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFDS 205
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVD 370
KGFK STY WWI+Q VSRA+ ++SRT+RLP HL++ L I + ++ E G +P+ +
Sbjct: 206 EKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPTEE 265
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDR 398
IA ++++ K+R+ ++ SL++
Sbjct: 266 EIACKMDVTVDKLRSVLQSAQPTLSLEK 293
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 127/203 (62%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL E V L+++++ + L K L+ LG E S EQ A + ++ EL
Sbjct: 54 YLQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFEL 113
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ ++ S A++K++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG+
Sbjct: 114 KRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 173
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + +L + G TP++ IAE
Sbjct: 174 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAE 233
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L M VR + + SL+
Sbjct: 234 ELEMEPAHVRELMSRVPRSVSLE 256
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261
S LLT +E V LS+ I+ + LD + + KE+ G EP++ Q A + + + L+ L
Sbjct: 291 SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEV 350
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
+ +K++ N+RLV+S+A+ Y N G + DL+Q G +GL+R EKFD S+GFK STY
Sbjct: 351 GRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYA 410
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQ 380
YWWIRQ +++AL E SRT+RLP H+ E + IR A +L +E P+ + +AE +S
Sbjct: 411 YWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISM 470
Query: 381 KKVRNATEAIGKVFSLDR 398
++R+ T SLDR
Sbjct: 471 TRLRHVTRCSRVPTSLDR 488
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + L+ + L+ + G +PS + LA + +S
Sbjct: 28 VRSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSS 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 88 MQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 147
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 148 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTE 207
Query: 372 IAEYLNMSQKKVRN 385
+AE++ + + V++
Sbjct: 208 LAEFVELPEDDVKD 221
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 181 RSMISPELIQNR--------LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLK 232
+S++ P ++ R ++ Y++ + LL+H + + L ++++ +SL+ + L+
Sbjct: 8 KSLVKPAVVPARQLPADVDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELE 67
Query: 233 ERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA 292
+ G S ++LA + +S +L+ L A+E++V +N+RLV+S+A++Y ++
Sbjct: 68 GQTGEPASRKELAKAAGLSELQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELL 127
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 352
DL+Q G IGL+RG+EKFD ++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L
Sbjct: 128 DLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNK 187
Query: 353 IRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
++ + L +E G TP+V +AE++ + +++V++
Sbjct: 188 LKKGQRELSQEMGRTPTVSELAEFVELPEEEVKD 221
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 118/192 (61%), Gaps = 1/192 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ + S LL+ E V LS+ I+ L L+ + LKER G +P+ Q AA+ R+ +
Sbjct: 254 LRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQ 313
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L+ L L ++K++ SN+RLV+SIA+ Y G ++ DLVQ G GL+RG+EKFD+S
Sbjct: 314 ITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDAS 373
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KGFK STY +WWIRQ V R+L + SRT+RLP H+ + ++ A+ + E G P
Sbjct: 374 KGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKE 433
Query: 372 IAEYLNMSQKKV 383
+AE +S K++
Sbjct: 434 VAEATGLSMKRL 445
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 130/194 (67%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL+ + L+ + G S ++LA + +S
Sbjct: 13 VRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSE 72
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 73 LQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 132
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 133 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSE 192
Query: 372 IAEYLNMSQKKVRN 385
+AE++ + +++V++
Sbjct: 193 LAEFVELPEEEVKD 206
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 127/208 (61%), Gaps = 1/208 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y++ + LLTH + + K+++ +SL K L E G EPS+ + A + I
Sbjct: 9 DTVRTYLREIGRVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANI 68
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+LQ + A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 69 DELQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFD 128
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
SKG++ STY YWWIRQ ++RA+ E +R +RLP H+ E+L I+ A+ L ++ G ++
Sbjct: 129 PSKGYRFSTYAYWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLAQQFGRAATI 188
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ +A L +S K+VR E + SLD
Sbjct: 189 NELAAELELSSKQVREYLERARQPLSLD 216
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ + L+ K +L+E+ E S + A + ++
Sbjct: 11 VRSYLKEIGRVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ + +A+ K++ +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 AKLRKDVDAGEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ ++ ++KG + ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQIAQQKGRSATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L ++ ++VR E + SLD
Sbjct: 191 LAEELELTPRQVREYLERARQPLSLD 216
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 120/181 (66%), Gaps = 1/181 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL+H + + K+++ ++L K L ++L EP++++ A + +S LQ L+
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++K++ +N+RLV+++A++Y D DL+Q G +GL RG+EKFD ++GF+ STY YWW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQGV+RA+ + SRT+RLP H+ E+L I+ + L +K G TP+ IAE +++ ++V
Sbjct: 159 IRQGVTRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQV 218
Query: 384 R 384
R
Sbjct: 219 R 219
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 136/222 (61%), Gaps = 3/222 (1%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
+KQ +SP + ++ Y+ + LLTH E + K+++ ++L D + + + LG
Sbjct: 6 TKQQAISVSP--TTDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELG 63
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS+E+ A +S +L+ L + A++K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 64 REPSLEEWAEKANLSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356
G +GL RG+EKFD ++G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ A
Sbjct: 124 EGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKA 183
Query: 357 KLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ L +K G + + IAE L + ++R+ + SLD
Sbjct: 184 QRELSQKLGRSATPAEIAEALELEPSQIRDYLTIARQPISLD 225
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E G +PS+++L+ L +S
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLST 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 97 SVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 156
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP+V
Sbjct: 157 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSE 216
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + + V++ G+ SL+
Sbjct: 217 LAKYVELPEDDVKDLMCKAGQPVSLE 242
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + +V LLT E + L+K+++ +SL K L E+L +P++++ + +++ EL
Sbjct: 26 YFQDIVRIPLLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSEL 85
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ + +A++K++ +N+RLV++IA++Y D DL+Q G +GL R ++KF S G+
Sbjct: 86 LEQINQGQIAKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQEGTLGLERAVDKFKPSLGY 145
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY YWWIRQG++RA+ + SRT+RLP H+ E+L I+ + L +K G P+V IAE
Sbjct: 146 KFSTYAYWWIRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPTVTEIAE 205
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L ++R K SLD
Sbjct: 206 ALGFKPSQIRECLRLARKPMSLD 228
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261
S LLT +E V LS+ I+ + LD + + KE+ G EP++ Q A + + + L+ L
Sbjct: 194 SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEV 253
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
+ +K++ N+RLV+S+A+ Y N G + DL+Q G +GL+R EKFD S+GFK STY
Sbjct: 254 GRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYA 313
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQ 380
YWWIRQ +++AL E SRT+RLP H+ E + IR A +L +E P+ + +AE +S
Sbjct: 314 YWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISM 373
Query: 381 KKVRNATEAIGKVFSLDR 398
++R+ T SLDR
Sbjct: 374 TRLRHVTRCSRVPTSLDR 391
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 130/194 (67%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL+ + L+ + G S ++LA + +S
Sbjct: 43 VRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSE 102
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 103 LQLKKKLQIGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 162
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 163 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSE 222
Query: 372 IAEYLNMSQKKVRN 385
+AE++ + +++V++
Sbjct: 223 LAEFVELPEEEVKD 236
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E G +PS+++L+A L ++
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTT 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 97 STIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 156
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP+V
Sbjct: 157 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSE 216
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + + V++ G+ SL+
Sbjct: 217 LAKYVELPEDDVKDLMCKAGQPVSLE 242
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y++ + LLTH + + L ++++ ++L++ + L R G PS +LA + +S
Sbjct: 22 VRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLS 81
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 82 PAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 141
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 142 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVT 201
Query: 371 RIAEYLNMSQKKVRN 385
+A Y+ + +++V++
Sbjct: 202 ELAGYVELPEEEVKD 216
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L L E G +PS+++L+ L +S
Sbjct: 26 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLST 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 86 SIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP+V
Sbjct: 146 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSE 205
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + + V++ G+ SL+
Sbjct: 206 LAKYVELPEDDVKDLMCKAGQPVSLE 231
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L K+++ L + K L E+ G EP+ + + + +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSL 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQ + + A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 VELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A L ++ G T ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTATIGE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L +S K++R E SLD
Sbjct: 191 LAVELELSPKQIREYMERARHPLSLD 216
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 135/222 (60%), Gaps = 3/222 (1%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
+KQ +SP + ++ Y+ + LLTH E + K+++ ++L D + + LG
Sbjct: 6 TKQQAISVSP--TTDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELG 63
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS E+ AA +S +L+ L + A++K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 64 REPSSEEWAAKANLSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356
G +GL RG+EKFD ++G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ A
Sbjct: 124 EGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKA 183
Query: 357 KLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ L +K G + + IAE L + ++R+ + SLD
Sbjct: 184 QRELSQKLGRSATPAEIAEALELEPSQIRDYLTIARQPISLD 225
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + K+++ +SL K L E L EP++E+ A + +
Sbjct: 20 VRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ ++ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 AELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KGFK STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G +P+
Sbjct: 140 KGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPNQSE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L++ ++R + SLD
Sbjct: 200 IANALDLEPSQIREYFSIARQPISLD 225
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 133/214 (62%), Gaps = 5/214 (2%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG EPS E+
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
AA++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q G +GL R
Sbjct: 65 AAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLER 124
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK- 363
G+EKFD SKG+K STY YWWIRQ ++RA+ + SRT+RLP H+ E+L ++ + L ++
Sbjct: 125 GVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQL 184
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G + + +AE L + ++VR + + SLD
Sbjct: 185 GRSATASELAEVLELPLEQVREYIQMNRQPVSLD 218
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
SK + M S +++ + Y+ + LLTH + + K+++ +SL + K +L + G
Sbjct: 8 SKTKQPMYSADMV----RTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS ++ A ++ + PELQ + + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356
G +GL RG+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 357 KLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ L +K G + + IA L + ++R + SLD
Sbjct: 184 QRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLD 225
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 122/203 (60%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H E + K+++ ++L D K L+E L EP+ + A IS +L
Sbjct: 14 YLREIGRFPLLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q L A K+V SN+RLV+SIA++Y+ + DL+Q G IGL RG+EKFD KG+
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGY 133
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQ ++RA+ E RT+RLP H++E+L +R + +L +K P+V +A
Sbjct: 134 RFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAV 193
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++++ KK+ + + SLD
Sbjct: 194 EMDLAPKKIEDYLNYARRSISLD 216
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 127/217 (58%), Gaps = 1/217 (0%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
S P + ++ Y+ + LLTH + + L K+++ ++L D K ++KE LG +PS
Sbjct: 9 SKAKPLFTADAVRTYLHEIGRVPLLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSD 68
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
++ A + + L L E A+ +++ +N+RLV++IA++Y + DL+Q G +G
Sbjct: 69 QEWAGAAHLDTATLTQQLHEGEQAKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLG 128
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
L RG+EKFD KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L
Sbjct: 129 LERGVEKFDPMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELS 188
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ G + +V IAE L + +VR + SLD
Sbjct: 189 QTLGRSATVGEIAEALELEVTQVREYLTMARQPISLD 225
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 23/203 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS----RP------------------EL 255
IKT ++L + + RL LG PS+E+ AAS IS +P EL
Sbjct: 108 IKTYITLIEAQERLTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEEL 167
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ I + A+E ++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG+
Sbjct: 168 EQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 227
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ +L +EKG TP+++ IA
Sbjct: 228 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLAQEKGRTPTIEDIAL 287
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L M+ +VR + + SL+
Sbjct: 288 ELEMTAPQVREVLLRVPRSVSLE 310
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 130/194 (67%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL+ + L+ + G S ++LA + +S
Sbjct: 13 VRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSE 72
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 73 LQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 132
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 133 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSE 192
Query: 372 IAEYLNMSQKKVRN 385
+AE++ + +++V++
Sbjct: 193 LAEFVELPEEEVKD 206
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L++ K LK++LG EP+ + AA+ ++
Sbjct: 11 VRAYLREIGRVPLLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAAAAELTE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL++ + A+ K+V +N+RLV+S+A++Y D+ DL+Q G +G+ RG+EKFD +
Sbjct: 71 AELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L I+ A+ +L +E G ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQENGRAATIAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L ++ K+VR E + SLD
Sbjct: 191 LAQELELTPKQVREYLERARQPLSLD 216
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RL LGC PS+ + A + + R EL SIL + A+E
Sbjct: 102 RLAIELGCRPSLNRWAQEMNLERAVLRDIIRQGKQRWAEQVGLSVKELDSILKAGAKAKE 161
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R ++KFD +KG++ STY YWWIRQ
Sbjct: 162 HMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWWIRQ 221
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ + +G TPS+D +A+ L M+ ++VR
Sbjct: 222 GITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQVREV 281
Query: 387 TEAIGKVFSLD 397
+ + + SL+
Sbjct: 282 LQKVPRSVSLE 292
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 133/214 (62%), Gaps = 5/214 (2%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG EPS E+
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
AA++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q G +GL R
Sbjct: 65 AAAVDLNLEDLDREIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLER 124
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK- 363
G+EKFD SKG+K STY YWWIRQ ++RA+ + SRT+RLP H+ E+L ++ + L ++
Sbjct: 125 GVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQL 184
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G + + +AE L + ++VR + + SLD
Sbjct: 185 GRSATASELAEVLELPLEQVREYIQMNRQPVSLD 218
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + + KK+K +L + K L ++LG EP+ + A + ++
Sbjct: 11 VRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATASCLTD 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+S + A+ K+V +N+RLV+++A++Y ++ DL+Q G IGL RG+EKFD +
Sbjct: 71 SQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L +K G T ++
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRTATISE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A LN++ ++R E + SL+
Sbjct: 191 LAIELNLTPDQLREYFEQARQPLSLE 216
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y++ + LLTH + + L ++++ ++L++ + L R G PS +LA + +S
Sbjct: 6 VRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLS 65
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 66 PAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 125
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 126 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVT 185
Query: 371 RIAEYLNMSQKKVRN 385
+A Y+ + +++V++
Sbjct: 186 ELAGYVELPEEEVKD 200
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLTH + + +K+++ + + K L E+L EP+ ++ A +++ L L + +
Sbjct: 37 LLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQGQI 96
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD + G+K STY YWW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++RA+ + SRT+RLP H+ ++L I+ + L +K G T V IA+ LN+ +++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKRVQRELSQKLGHTADVTEIAQALNLEPRQI 216
Query: 384 RNATEAIGKVFSLD 397
R + + SLD
Sbjct: 217 RECLQFARQPVSLD 230
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L E G +PS+++L+ L +S
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLST 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 97 SIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 156
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP+V
Sbjct: 157 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSE 216
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + + V++ G+ SL+
Sbjct: 217 LAKYVELPEDDVKDLMCKAGQPVSLE 242
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 139/208 (66%), Gaps = 6/208 (2%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEP 239
RSM P + + ++ Y++ + LL+H + + L ++++ ++L++ + LK R G +P
Sbjct: 38 RSM--PPVDGDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDP 95
Query: 240 SMEQLAASLRISRPE-LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 298
S ++LAA+ + RPE L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G
Sbjct: 96 SQQELAAAAGL-RPEVLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEG 154
Query: 299 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKL 358
IGL+RG+EKFD ++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ +
Sbjct: 155 TIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQR 214
Query: 359 RL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
L +E G TP++ +A + + +++V++
Sbjct: 215 ELSQELGRTPTLSELAVAVELPEEEVKD 242
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ ++ + E +PS E+LA L +S
Sbjct: 26 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNLST 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+++ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 86 SQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L +E TP++
Sbjct: 146 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTISE 205
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+Y+ + + V++ G+ SL+
Sbjct: 206 LAKYVELPEDDVKDLMCKAGQPVSLE 231
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL++ + L+ LG +P + A IS
Sbjct: 28 VRSYLRDIGRVPLLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISP 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 88 IQLKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 147
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR++RLP H+ E L ++ + L +E TP++
Sbjct: 148 RGYKFSTYAYWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKE 207
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
++EY+ + + V++ G+ SL+
Sbjct: 208 LSEYVELPETDVKDLMSRAGQPVSLE 233
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
+ HAE + LS+KI+ L +D + +++ G +PS E+LAA+L+I L+S + + A
Sbjct: 65 IDHAEEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQA 124
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
+ KL+ +N+RLV+S+A++Y N G DL+Q G +GL+R EKF++ +GF+ STY +WWI
Sbjct: 125 QRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWI 184
Query: 326 RQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
RQG++R + +RT+RLP H+ +++ L+ R + ++ +G P+ +AE L + KK+R
Sbjct: 185 RQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLR 244
Query: 385 NATEAIGKVFSLD 397
+A SLD
Sbjct: 245 MIQQAAALPLSLD 257
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EPS+E+ AA ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 SEVKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +PS
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAQELELEPAQIREYLNMARQPVSLD 225
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 132/214 (61%), Gaps = 5/214 (2%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG EPS E+
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
AA++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q G +GL R
Sbjct: 65 AAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLER 124
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK- 363
G EKFD SKG+K STY YWWIRQ ++RA+ + SRT+RLP H+ E+L ++ + L ++
Sbjct: 125 GFEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQL 184
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G + + +AE L + ++VR + + SLD
Sbjct: 185 GRSATASELAEVLELPLEQVREYIQMNRQPVSLD 218
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L K L E LG +P+ + A ++ +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSE 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ + + A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 72 AQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 131
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +
Sbjct: 132 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAE 191
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFP-SLNGLPGETHHIHCG 417
+A L ++ K++R LDR P SL+ G+ G
Sbjct: 192 LASELELTPKQIRE---------YLDRARLPLSLDLRVGDNQDTELG 229
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 131/217 (60%), Gaps = 1/217 (0%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M + + ++ ++ Y++ + LLTH E + K++ L K L +P++
Sbjct: 4 AMKTAQTPKDLVRTYLREIGRVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTL 63
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
++ A ++ +L+ + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q G IG
Sbjct: 64 DEWAERAKLEPQDLEEAIEKGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIG 123
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
+ RG+EKFD SKG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L
Sbjct: 124 MQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLS 183
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
++ G ++ +A+ L+++ K+VR E SLD
Sbjct: 184 QRLGRAATISELAQELDLTPKQVREYLEKARVPLSLD 220
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE-RLGCEPSMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK+ R G E + E++A + +S
Sbjct: 27 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVS 86
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 87 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 146
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TPSV
Sbjct: 147 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVT 206
Query: 371 RIAEYLNMSQKKVRN 385
+A ++ + +++V++
Sbjct: 207 ELASFVELPEEEVKD 221
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 119/191 (62%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RL LGC P+M + AA + + R E++++L + A+E
Sbjct: 100 RLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAVLKAGAKAKE 159
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R ++KFD +KG++ STY YWWIRQ
Sbjct: 160 HMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWWIRQ 219
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ + +G TPS++ +A+ LNM+ +VR
Sbjct: 220 GITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLEDVAKVLNMTAAQVREV 279
Query: 387 TEAIGKVFSLD 397
+ + + SL+
Sbjct: 280 LQKVPRSVSLE 290
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L K L E LG +P+ + A ++ +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSE 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ + + A+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 72 AQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 131
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L ++ G +
Sbjct: 132 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAE 191
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFP-SLNGLPGETHHIHCG 417
+A L ++ K++R LDR P SL+ G+ G
Sbjct: 192 LASELELTPKQIRE---------YLDRARLPLSLDLRVGDNQDTELG 229
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 159/284 (55%), Gaps = 8/284 (2%)
Query: 135 SPSKKTH-KKVPVTCSGVSARQ-----RRLNSKKKILSQNKSILQQNGSKQLRSMISPEL 188
+P++K +K+ V+ + S RQ RR+ +K S +S ++ S + + + S E+
Sbjct: 195 TPAEKQEVEKLSVSSAVRSTRQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEI 254
Query: 189 IQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
N Y++ S +LLT E +LS+ I+ L L+ + L ER G +P+ Q A++
Sbjct: 255 DHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASA 314
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+ + L+ + + +++++ SN+RLV+SIA+ Y G D DLVQ G GL+RG E
Sbjct: 315 AGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAE 374
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVT 366
KFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E ++ A+ +L E G
Sbjct: 375 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQ 434
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
P + +AE +S K++ + SLD++ +LN P E
Sbjct: 435 PKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSE 478
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 120/186 (64%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L+E+LG +P+ Q+AA L ++ +
Sbjct: 69 AFFKEMARYPLLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 188
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K G PS +A
Sbjct: 189 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMA 248
Query: 374 EYLNMS 379
+L M+
Sbjct: 249 AFLEMT 254
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 129/213 (60%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ ++L + + E LG EPS ++ A
Sbjct: 13 PTLHTDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++S +L L + A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG
Sbjct: 73 EGVQLSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD S+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPSRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKFG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IAE L + +++R + SLD
Sbjct: 193 RSATPAEIAEALELETEQIREYLTISRQPISLD 225
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 101/147 (68%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT AE V L+++++ ++LD+ + RL++ L P+ +LAA+L IS +LQ + +C
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG+K STY YWW
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG 351
IRQG++R + RT+RLP H+ E+L
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLN 205
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 129/208 (62%), Gaps = 1/208 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y++ + LLT + ++L ++++T + L+ K +L + G EPSME + +
Sbjct: 22 DNVRLYLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAADL 81
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
ELQ++L + A++K++ +N+RLV++IA++Y + ++ DL+Q G +GL R EK+D
Sbjct: 82 EIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKYD 141
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
+GF+ STY YWWIRQG++RA+ E RT+RLP HL E L I+ + L + G +P+
Sbjct: 142 PQRGFRFSTYAYWWIRQGITRAIAEQGRTIRLPIHLTEALNKIKRTQRELSQSLGRSPTT 201
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L+++ +KV+ S+D
Sbjct: 202 AEVAQALSLTPEKVQQYLHCAHHTLSID 229
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 126/208 (60%), Gaps = 5/208 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++T ++L + K L +R+G EPS+++ A + I
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
LQ L + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 KALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE---KGVTPSV 369
KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L + + TP+
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQSLGRSATPA- 198
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 199 -EIAQELEIEPSQIREFLSIARQPISLD 225
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
SK + M S +++ + Y+ + LLTH + + K+++ +SL + K +L + G
Sbjct: 8 SKTKQPMYSADMV----RTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS ++ A ++ + PEL+ + + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356
G +GL RG+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 357 KLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ L +K G + + IA L + ++R + SLD
Sbjct: 184 QRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLD 225
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 146/258 (56%), Gaps = 15/258 (5%)
Query: 140 THKKVPVT----CSGVSARQRRLNSKK--------KILSQNKSILQQNGSKQLRSMISPE 187
THK++ + G++ R RR +K K S S+ + SK+ R +
Sbjct: 194 THKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEV 253
Query: 188 LIQNRLKGYVKGVVS-EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
+ L+ Y++G S LLT +E + LS I+ L L+ + L ER G +P+ Q AA
Sbjct: 254 DYSDPLR-YLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAA 312
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
+ + + L+ + ++ ++K++ SN+RLV+SIA+ Y G ++ DLVQ G GL+RG
Sbjct: 313 AAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 372
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGV 365
EKFD+SKGFK STY +WWI+Q V ++L + SRT+RLP H+ E ++ A+ +L E G
Sbjct: 373 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 432
Query: 366 TPSVDRIAEYLNMSQKKV 383
P + +AE +S K++
Sbjct: 433 HPDDEEVAEAAGLSMKRL 450
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 126/217 (58%), Gaps = 2/217 (0%)
Query: 196 YVKGVV-SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y++G S LLT +E LS I+ L L+ LK R G PS Q AA+ I +
Sbjct: 267 YLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRT 326
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L + ++K++ SNVRLV+SIA+ Y G ++ DLVQ G GL+RG EKFD+SKG
Sbjct: 327 LRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKG 386
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDRIA 373
FK STY +WWI+Q V ++L + SRT+RLP H+ E ++ A+ + L E G P+ + +A
Sbjct: 387 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVA 446
Query: 374 EYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
E +S K++ SLD++ ++N P E
Sbjct: 447 EATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSE 483
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 128/210 (60%), Gaps = 12/210 (5%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + L K+++ ++L +HK L +RLG EPS + A
Sbjct: 13 PTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+ +S +L L + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 EAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE--- 362
+EKFD +KG+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLG 192
Query: 363 KGVTPS-------VD--RIAEYLNMSQKKV 383
+ TP+ +D +I EYL++S++ +
Sbjct: 193 RSATPAEVAKALEIDPSQIREYLSLSRQPI 222
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+K+++ + D + L+ LG +P+ Q+A I+ +
Sbjct: 80 AFFKEMARYPLLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQ 139
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 140 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 199
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K PS IA
Sbjct: 200 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEIA 259
Query: 374 EYLNMS 379
E+L MS
Sbjct: 260 EFLEMS 265
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H + V K+++ +L + K L++ L EP+ ++ A ++S +L
Sbjct: 14 YLREISRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q L A K+V SN+RLV+SIA++Y+ + DL+Q G IGL RG+EKFD KG+
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGY 133
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQ ++RA+ E RT+RLP H++E+L +R + +L +K P+V +A
Sbjct: 134 RFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAV 193
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++++ KK+ + + SLD
Sbjct: 194 EMDLAPKKIEDYLNYARRSISLD 216
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 123/193 (63%), Gaps = 1/193 (0%)
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
+ HAE + LS+KI+ L +D + +++ G +PS E LA +L+IS L+S + + A
Sbjct: 65 IDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQA 124
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
+ KL+ +N+RLV+S+A++Y N G DL+Q G IGL+R EKF++ +GF+ STY +WWI
Sbjct: 125 QRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFRFSTYAHWWI 184
Query: 326 RQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVR 384
RQG++R + +RT+RLP H+ +++ L++ L + +G P+ +AE L + KK+R
Sbjct: 185 RQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTEAELAEALGIKVKKLR 244
Query: 385 NATEAIGKVFSLD 397
+A SLD
Sbjct: 245 MIQQAAALPLSLD 257
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 124/201 (61%), Gaps = 6/201 (2%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS-----MEQL 244
++ ++ Y++ + LL E + L++KI L L+ + R+ E+L C+P E
Sbjct: 66 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQLDCDPDDLERHPEPW 125
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A+ ++++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 126 ASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 185
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEK 363
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E
Sbjct: 186 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEM 245
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + IAE + M+ +K+R
Sbjct: 246 GRKPTEEEIAERMEMTIEKLR 266
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 123/203 (60%), Gaps = 23/203 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECS-------------- 263
IK +SL + + +L +LG PS+E+LA + I+ EL+ L E
Sbjct: 110 IKNFVSLIEKRDQLTSQLGHRPSLERLADAAEITVFELKKTLYEGKRHWAELANLEVQEL 169
Query: 264 --------LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
A+E+++ +N+RLV+S+A+RY N G ++ DL+Q G +GL R ++KFD +KG+
Sbjct: 170 ERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVDKFDPTKGY 229
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ + KG TPS++ +++
Sbjct: 230 RFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKIAQLKGATPSIEELSQ 289
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L MS ++R + + SL+
Sbjct: 290 ELEMSPPQIREVLMRVPRSVSLE 312
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 128/210 (60%), Gaps = 12/210 (5%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + L K+++ ++L +HK L +RLG EPS + A
Sbjct: 30 PTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWA 89
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+ +S +L L + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 90 EAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 149
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE--- 362
+EKFD +KG+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +
Sbjct: 150 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLG 209
Query: 363 KGVTPS-------VD--RIAEYLNMSQKKV 383
+ TP+ +D +I EYL++S++ +
Sbjct: 210 RSATPAEVAKALEIDPSQIREYLSLSRQPI 239
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H + V K+++ +L + K L++ L EP+ ++ A ++S +L
Sbjct: 14 YLREISRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q L A K+V SN+RLV+SIA++Y+ + DL+Q G IGL RG+EKFD KG+
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGY 133
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQ ++RA+ E RT+RLP H++E+L +R + +L +K P+V +A
Sbjct: 134 RFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAV 193
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++++ KK+ + + SLD
Sbjct: 194 EMDLAPKKIEDYLNYARRSISLD 216
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L+ + L+ +GCEP+ E+ A +
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVG 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 136 QALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 195
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E P+
Sbjct: 196 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPT 255
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 256 EEEIAERMEMTIEKLR 271
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 133/210 (63%), Gaps = 2/210 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRIS 251
++ Y++ + LLTH + + K+++ ++L K L ++LG EPS+++ A AS ++
Sbjct: 15 IRIYLREIGRVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLD 74
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L + + A+ K+V +N+RLV+SIA++Y ++ DL+Q G IGL RG+EKFD
Sbjct: 75 NTQLTQAIADGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEKFDP 134
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
+KG+++STY YWWIRQ ++RA+ +NSR +RLP H+ E+L I+ + +L + TPS+
Sbjct: 135 TKGYRLSTYAYWWIRQAITRAIAQNSRNIRLPIHVTEKLNKIKKTQRQLSQHLKRTPSIS 194
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREA 400
+A L ++ +V + E + SL+++
Sbjct: 195 ELAAALELTPNQVISYLEVARQPISLEKQV 224
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 128/208 (61%), Gaps = 1/208 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y++ + LLTH E + L K+++ ++L + K +L E LG + + + + + I
Sbjct: 18 DTVRTYLQEIGRVPLLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGI 77
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S EL L A+ K++ +N+RLV+++A++Y + DL+Q G +GL RG+EKFD
Sbjct: 78 SETELVHQLRHGERAKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFD 137
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
KG+K STY YWWIRQ ++RA+ + SRT+RLP H+ E+L I+ + L +K G +PSV
Sbjct: 138 PMKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPSV 197
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
I + L+++ ++VR + SLD
Sbjct: 198 GEIGQELDLTPEQVREYLTMSRQPISLD 225
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILM----------------------ECSLARE 267
RL LG PS+E+ A S I EL+ +L+ E + A+E
Sbjct: 117 RLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQSEGNRAKE 176
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R ++KFD +KG++ STY YWWIRQ
Sbjct: 177 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTYAYWWIRQ 236
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG TP++D IA L M+ +VR
Sbjct: 237 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTIDDIAAELEMTPPQVREV 296
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 297 LLRVPRSVSLE 307
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 123/194 (63%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + +K+++ ++L K +L +L +P+ ++ ++ I
Sbjct: 25 VRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L L + A++K++ +N+RLV+SIA++Y D DL+Q G +GL RG+EKFD +
Sbjct: 85 KSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ + L +K G TP+
Sbjct: 145 KGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVD 204
Query: 372 IAEYLNMSQKKVRN 385
IAE L++ K++R+
Sbjct: 205 IAEELSLDPKQIRD 218
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y + ++ LLT E + L+KK++ +SL K L ++L +P++++ + +++ E
Sbjct: 34 SYFQDIICIPLLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTE 93
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L + A++K++ +N+RLV++IA++Y D DL+Q G +GL R ++KF + G
Sbjct: 94 LLEQIDRGQRAKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQEGTLGLERAVDKFQPALG 153
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQG++RA+ + SRT+RLP H+ E+L I+ + L +K G PSV IA
Sbjct: 154 YKFSTYAYWWIRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPSVTEIA 213
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
E + + ++R+ K SLD
Sbjct: 214 EVMEVKPSQIRDYLSLARKPMSLD 237
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 100/147 (68%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT E V L+++++ ++LD+ + RL++ L P+ +LAA+L IS +LQ + +C
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG+K STY YWW
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG 351
IRQG++R + RT+RLP H+ E+L
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLN 205
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + K+++ +SL + K L++ L E ++E+ A +
Sbjct: 24 VRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTP 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ I+ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 84 NEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 143
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KGFK STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G +PS +
Sbjct: 144 KGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPSPNE 203
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IAE L + ++R + SLD
Sbjct: 204 IAEALQLEPAQIREYFSIARQPISLD 229
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 132/217 (60%), Gaps = 5/217 (2%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
S +SP+++ + Y++ + LLT + + ++++ ++++ K +L ++L EP +
Sbjct: 2 SSLSPDMV----RVYLREIGQFPLLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKL 57
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
+LA + S E+ IL A++K+V +N+RLV+SIA++Y ++ DL+Q G IG
Sbjct: 58 AELADFVNKSETEVTQILQLGQRAKQKMVTANLRLVVSIAKKYQRRNLELLDLIQEGAIG 117
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL- 360
L RGIEKFD ++G+K+STY YWWI Q ++RA+ E SR +RLP H++E+L I+ + L
Sbjct: 118 LQRGIEKFDPNRGYKLSTYAYWWISQAITRAIAEKSRAVRLPIHVNEKLNQIKKVQRELF 177
Query: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ G +V IA+ L++ ++R A SLD
Sbjct: 178 QTLGRRATVTEIAQKLDIQASQIREYLSAASATISLD 214
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 130/209 (62%), Gaps = 3/209 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTG--LSLDDHKLRLKERLGCEPSMEQLAASLRI 250
++ Y++ + +LLT +E V LS+KI+ L L+ K L+ +G EPS+ + + ++ +
Sbjct: 276 VRAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGM 335
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+ + + E +++K+V SN+RLV+SI + Y G + DL+Q G +GL+RG EKFD
Sbjct: 336 EQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFD 395
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSV 369
KGFK STY +WWIRQ V+RA+ + SR +RLP HL+E + I A K+ ++E G P
Sbjct: 396 PDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRD 455
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ +AE + MS +K++ ++ S+DR
Sbjct: 456 EEVAELVGMSVEKLKFIVKSAKTPSSMDR 484
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 122/203 (60%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H E + K+++ ++L D K L+ L EP++ + A +S +L
Sbjct: 14 YLREIGRFPLLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q L A K+V SN+RLV+SIA++Y+ + DL+Q G IGL RG+EKFD KG+
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGY 133
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQ ++RA+ E RT+RLP H++E+L +R + +L +K P++ +A
Sbjct: 134 RFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTIQELAV 193
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++++ KK+ + + SLD
Sbjct: 194 EMDLTPKKIEDYLNYARRSISLD 216
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 12/203 (5%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT E + K+++ ++L D K L + L +PS+ + AA + +
Sbjct: 20 VRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+ I+ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 KEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +P+
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFGRSPTPTE 199
Query: 372 IA-----------EYLNMSQKKV 383
IA EYLNM+++ V
Sbjct: 200 IAHELELEPMQIREYLNMARQPV 222
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK++ G + + E++A + +S
Sbjct: 27 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVS 86
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 87 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 146
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TPSV
Sbjct: 147 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVT 206
Query: 371 RIAEYLNMSQKKVRN 385
+A ++ + +++V++
Sbjct: 207 ELASFVELPEEEVKD 221
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL+H + + +++++ + + K L E+L EP++++ A +++ L L + +
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD + G+K STY YWW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++RA+ + SRT+RLP H+ ++L I+ + L +K G V IA+ LN+ ++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216
Query: 384 RNATEAIGKVFSLD 397
R + + + SLD
Sbjct: 217 REYLQLVRQPVSLD 230
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 128/208 (61%), Gaps = 1/208 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LLTH + + K++K + + + L E LG EPS A +
Sbjct: 8 DTIQAYLKSIGRVPLLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGL 67
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
LQ+ + A+ K++ +N+RLV+SIA++Y + D+ DLVQ G IGL R +EKFD
Sbjct: 68 DVETLQAQVAAGEAAKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQEGSIGLNRAVEKFD 127
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
+KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E + ++ A+ +L ++ G SV
Sbjct: 128 PAKGYRFSTYAYWWIRQAMTRAIAEKSRTVRLPIHVTETINKVKRAQRQLSQQLGRMASV 187
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ ++ +L+++ ++VR++ + SL+
Sbjct: 188 EEVSTFLDLTSQQVRDSLRHARRPLSLE 215
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
N + Y+KG+ LLTH + + L K ++ + L+ + L E + EP++ + A + +
Sbjct: 9 NLVSRYLKGIGRFPLLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNL 68
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S L+ + A++K++ SN+RLV+SIA++Y DM DL+Q G +GL RG+EKFD
Sbjct: 69 SPEALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFD 128
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSV 369
KG++ STY YWWIRQ ++RA+ + RT+RLP H++E+L IR A+ + E G +V
Sbjct: 129 PLKGYRFSTYAYWWIRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATV 188
Query: 370 DRIAEYLNMSQKKVR 384
+AE +++ +KVR
Sbjct: 189 SEVAEKVSLPAEKVR 203
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 127/195 (65%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E + +LA + +S
Sbjct: 47 VRSYLRDIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLS 106
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 107 AVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 166
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TPSV
Sbjct: 167 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVT 226
Query: 371 RIAEYLNMSQKKVRN 385
+A ++ + + +V+
Sbjct: 227 ELASFVELPEDEVKE 241
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK++ G + + E++A + +S
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVS 72
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 73 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 132
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TPSV
Sbjct: 133 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVT 192
Query: 371 RIAEYLNMSQKKVRN 385
+A ++ + +++V++
Sbjct: 193 ELASFVELPEEEVKD 207
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L K+++ ++L + + L + LG E + E+ AA+ ++
Sbjct: 2 VRTYLQEIGRVPLLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTP 61
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL +IL A++K++ +N+RLV+S+A++Y ++ DLVQ G +GL RG+EKFD +
Sbjct: 62 TELCNILKRGERAKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPT 121
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G + +
Sbjct: 122 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAE 181
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A+ L + +++R + SLD
Sbjct: 182 VAKALELEPEQIREYLTLARQPVSLD 207
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 128/196 (65%), Gaps = 4/196 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E P+ E LA + +
Sbjct: 47 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAE-LAKAAGL 105
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 106 SAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 165
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSV 369
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L ++ G TPSV
Sbjct: 166 PTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSV 225
Query: 370 DRIAEYLNMSQKKVRN 385
+A ++ + + +V+
Sbjct: 226 TELAAFVELPEDEVKE 241
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL+E+L EP + A +++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQ 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
I P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 140 IPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 259
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 260 EEEIATRMEMTIEKLR 275
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + L++ + L+ LG +P + A +S
Sbjct: 28 VRSYLRDIGRVPLLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSP 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 88 IQLKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 147
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR++RLP H+ E L ++ + L +E TP++
Sbjct: 148 RGYKFSTYAYWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKE 207
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
++EY+ + + V++ G+ SL+
Sbjct: 208 LSEYVELPETDVKDLMSRAGQPVSLE 233
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 133/231 (57%), Gaps = 1/231 (0%)
Query: 154 RQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVR 213
+ RR + +K ++ S + S++ R+ + + L+ + LLT E +
Sbjct: 231 KARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELE 290
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSN 273
LS+ I+ L L+ + L ER G EP+ Q AA+ +++ L+ L +L ++K++ SN
Sbjct: 291 LSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSN 350
Query: 274 VRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAL 333
+RLV+SIA+ Y G ++ DLVQ G GL+RG EKFD+SKGFK STY +WWI+Q V + L
Sbjct: 351 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFL 410
Query: 334 VENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQKKV 383
+ SRT+RLP H+ E ++ A+ + L E G P IAE +S K++
Sbjct: 411 SDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRL 461
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 127/195 (65%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E + +LA + +S
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLS 72
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 73 AVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 132
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TPSV
Sbjct: 133 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVT 192
Query: 371 RIAEYLNMSQKKVRN 385
+A ++ + + +V+
Sbjct: 193 ELASFVELPEDEVKE 207
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 129/206 (62%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + L ER EP+ + A + +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ ++ E LA+ ++V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 71 ADLEQVIQEGELAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L +K G S
Sbjct: 131 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAASAAE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L+++ K+VR+ E + SLD
Sbjct: 191 LAEELDLTTKQVRDYLEKARQPLSLD 216
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L LG +P+ + A + +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSE 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQ + A+ +V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD +
Sbjct: 72 TELQRTIHAGERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPT 131
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ L +K G + +
Sbjct: 132 KGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQKLGRAATANE 191
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ K++R E SLD
Sbjct: 192 LAAELELTPKQIREYLERARLPLSLD 217
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
+S + + ++ Y++ + LLT + + K+++ ++L D K L ++LG EPS+ +
Sbjct: 11 LSTKFTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTE 70
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
A + S E+ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL
Sbjct: 71 WATHVNQSENEVTQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 130
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
RG+EKFD +G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K
Sbjct: 131 RGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQK 190
Query: 364 -GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G +P+ IA+ L + ++R + SLD
Sbjct: 191 LGRSPTPTEIAKELELEPAQIREYLNMARQPVSLD 225
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ERL +P + AA ++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 259 EEEIATRMEMTIEKLR 274
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 178 KQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
K+L+ M +P + ++ Y++ + +LL+ +E V LS+KI+ L L+ + L+ +G
Sbjct: 259 KKLQIMRTP---SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGR 315
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297
EP++ + + ++ + + L+ + E A++KLV SN+RLV+SI + Y G + DL+Q
Sbjct: 316 EPTLSEWSQAVSLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQE 375
Query: 298 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK 357
G +GL+RG EKFD G+K STY WWIRQ V+RA+ + SR +RLP H++E + I AK
Sbjct: 376 GSLGLIRGAEKFDPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAK 435
Query: 358 LRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +E G P + +A + MS +K+ ++ S+DR
Sbjct: 436 MTISQELGRQPRDEEVAAMVGMSVEKLLFIVKSARPPTSMDR 477
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 124/207 (59%), Gaps = 2/207 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRIS 251
++ Y++ + LLTH + + K+++ +L + L G EP+ ++ A AS
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLAD 70
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
EL I+ LA+ K+V +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 71 SEELAKIIAAGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDP 130
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
+KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L I+ A+ +L +K G P+
Sbjct: 131 TKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAG 190
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L ++ K+VR E SLD
Sbjct: 191 ELATELELTTKQVREYLERARLPLSLD 217
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RL LGC PS+ + A + + R EL SIL + A+E
Sbjct: 102 RLAIELGCRPSLNRWAQEMNLERAVLRDIIRQGKQRWAEQVGLSVKELDSILKAGAKAKE 161
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R ++KFD +KG++ STY YWWIRQ
Sbjct: 162 HMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWWIRQ 221
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNA 386
G++R SRT+RLP H+ E+L I+ A+ ++ + +G TPS+D +A+ L M+ ++VR
Sbjct: 222 GITRGDRTQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQVREV 281
Query: 387 TEAIGKVFSLD 397
+ + + SL+
Sbjct: 282 LQKVPRSVSLE 292
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 128/196 (65%), Gaps = 4/196 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E P+ E LA + +
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAE-LAKAAGL 71
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 72 SAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 131
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSV 369
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L ++ G TPSV
Sbjct: 132 PTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSV 191
Query: 370 DRIAEYLNMSQKKVRN 385
+A ++ + + +V+
Sbjct: 192 TELAAFVELPEDEVKE 207
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 129/195 (66%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE-RLGCEPSMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK+ R G E + ++ A + +S
Sbjct: 10 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMS 69
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 70 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 129
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TPSV
Sbjct: 130 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVT 189
Query: 371 RIAEYLNMSQKKVRN 385
+A ++ + +++V++
Sbjct: 190 ELASFVELPEEEVKD 204
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EP+ME+ A + S
Sbjct: 23 VRTYLREIGRVPLLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSE 82
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 83 AELNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPI 142
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L + G +P+
Sbjct: 143 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQTLGRSPNAVE 202
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IAE L + ++R + SLD
Sbjct: 203 IAEALELEPAQIREYLNLARQPVSLD 228
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EPS+ + AA + S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 TEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +PS
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 117/186 (62%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+ +LG P+ Q+AA L I+ +
Sbjct: 70 AFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQ 129
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 130 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 189
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K PS +A
Sbjct: 190 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMA 249
Query: 374 EYLNMS 379
E L +S
Sbjct: 250 EALEIS 255
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 123/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL+++L EP + A +++
Sbjct: 82 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQ 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 142 LPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 201
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 202 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 261
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 262 EEEIATRMEMTIEKLR 277
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L L+ + +L E CEP + A+++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVD 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
++ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 140 MALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 259
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 260 EEEIATRMEMTIEKLR 275
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+E LG +PS ++AA ++ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 200
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K PS +A
Sbjct: 201 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMA 260
Query: 374 EYLNMS 379
L +S
Sbjct: 261 TALEIS 266
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L EP ++ A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 259 EEEIATRMEMTIEKLR 274
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
++K + LL +E + L++++K + L + K +L +LG ++ ++AA++ ++ +
Sbjct: 64 AFLKDMARYPLLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQ 123
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
LQ + +A+ K++ SN+RLV+SIA+RY N G DLVQ G +GL R EKFD KG
Sbjct: 124 LQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKG 183
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
FK STY YWWIRQG++RA+ +SRT+RLP H+ E+L ++ + L +E P+ +A
Sbjct: 184 FKFSTYAYWWIRQGITRAIANDSRTIRLPIHIVEKLNKLKKLQRHLKKELQRNPTEQELA 243
Query: 374 EYLNMSQKKVRNATEAIGKVFSLDR 398
+ L ++ ++++ A + SL+R
Sbjct: 244 DALEITLEQLQMLQRARQQALSLNR 268
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L EP + A +
Sbjct: 62 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVD 121
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 122 MELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 181
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 182 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 241
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA+ + M+ +K+R
Sbjct: 242 EEEIADRMEMTIEKLR 257
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 142/238 (59%), Gaps = 15/238 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+++ G E P+ E LA + +
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAE-LATAAGL 71
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 72 SALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 131
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSV 369
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 132 PTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTV 191
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSL--------DREAFPSLNG---LPGETHHIHC 416
+A ++ + +++V++ + SL D E L G LP E + C
Sbjct: 192 TELAGFVELPEEEVKDLMCRARQPVSLEMKVGDGDDTELLELLAGDGELPEEQVEVEC 249
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT + V ++T ++++ K L LG EP++E + + ++ EL
Sbjct: 14 YLKEIGRVPLLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEEL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ + + A+ ++V +N+RLV+S+A++Y ++ DL+Q G IGL RG+EKFD SKG+
Sbjct: 74 KMAVEKGQRAKRQMVEANLRLVVSVAKKYLKRNVEILDLIQEGTIGLQRGVEKFDPSKGY 133
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
+ STY YWWIRQ ++RA+ E SRT+RLP H+HE++ I+ + +L ++ G + + IA
Sbjct: 134 RFSTYAYWWIRQAMTRAIAEKSRTMRLPIHIHEKINKIKKTQRQLAQQLGRSATFQEIAN 193
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L++ +KVR+ + SLD
Sbjct: 194 ALDLPLEKVRDCISYNRQPLSLD 216
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL+++L EP ++ A ++
Sbjct: 81 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVE 140
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 141 LPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 200
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 201 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 260
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 261 EEEIATRMEMTIEKLR 276
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 143/244 (58%), Gaps = 13/244 (5%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQL 244
P + + ++ Y++ + LLTH + + L ++++ + L++ + L+ R G + PS +
Sbjct: 31 PPVDGDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEW 90
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A++ +S L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+R
Sbjct: 91 ASAAGLSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVR 150
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEK 363
G+EKFD ++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E
Sbjct: 151 GVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQEL 210
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL--------DREAFPSLNG---LPGETH 412
G TP++ +A + + +++V++ + SL D E L G LP E+
Sbjct: 211 GRTPTLSELAVCVELPEEEVKDLLCRARQPVSLETKVGDGEDTELLDLLQGDGTLPAESV 270
Query: 413 HIHC 416
C
Sbjct: 271 DSEC 274
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 142/238 (59%), Gaps = 15/238 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+++ G E P+ E LA + +
Sbjct: 1 MRSYLRDIGRVPLLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAE-LATAAGL 59
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 60 SALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 119
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSV 369
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 120 PTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTV 179
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSL--------DREAFPSLNG---LPGETHHIHC 416
+A ++ + +++V++ + SL D E L G LP E + C
Sbjct: 180 TELAGFVELPEEEVKDLMCRARQPVSLEMKVGDGDDTELLELLAGDGELPEEQVEVEC 237
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L ++ + RL E+L EP + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 259 EEEIATRMEMTIEKLR 274
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 122/209 (58%), Gaps = 1/209 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + Y++ + LL H + + K+++ + L + K +L E+L EP++ + A
Sbjct: 8 KDSITAYLQEIGRFPLLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQAD 67
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
I +LQ L A K+V SN+RLV+SIA++Y+ + DL+Q G IGL RG+EKF
Sbjct: 68 IPVSQLQKELKLGQTANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKF 127
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPS 368
D +KG++ STY YWWIRQ ++RA+ E RT+RLP H++E+L +R K +L K P+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLNKLRKVKRQLSLKLHRDPT 187
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
V +A + +S KKV SLD
Sbjct: 188 VAELATEMELSPKKVEAFLSYARHSISLD 216
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 126/214 (58%), Gaps = 3/214 (1%)
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
E + ++ Y++ + +LL E + LSK++ + L+ + +E G P+ + A
Sbjct: 272 EAKDDTIRSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQ 331
Query: 247 SLRISRP--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
+L+ + + A+E++V +N+RLV+SIA+RY N G + DL+Q G IGL+R
Sbjct: 332 GCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIR 391
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EK 363
G+EKFD+ +GF+ STY WWIRQ ++RA+ ++SR++RLP H+H+ + LIR L+ E
Sbjct: 392 GVEKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVEL 451
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G PS + I E + + + K R E + SL+
Sbjct: 452 GRPPSEEEICESVGIDRAKYRLVMECSRNIVSLE 485
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L + K L +LG EPS+ + A
Sbjct: 13 PVFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++ EL + + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 NYVQLGEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L ++ G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA+ L++ ++R + SLD
Sbjct: 193 RSATPGEIAQALDLEPAQIREYLSMARQPVSLD 225
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + R+ +RL PS + A +
Sbjct: 61 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVN 120
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 121 MRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 180
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 181 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 240
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 241 EEEIATRMEMTIEKLR 256
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 120/197 (60%), Gaps = 23/197 (11%)
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILME 261
L D + RL LG PS+E+ A + IS +P EL+ + E
Sbjct: 141 LMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASLTVAELEEAIRE 200
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY
Sbjct: 201 GLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYA 260
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQ 380
YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ +++G TP++D +A L+M+
Sbjct: 261 YWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQDQGRTPTLDDVARELDMTA 320
Query: 381 KKVRNATEAIGKVFSLD 397
+VR + + SL+
Sbjct: 321 AQVREVLLRVPRSVSLE 337
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 122/210 (58%), Gaps = 23/210 (10%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL LG PS+E+ AA+ I RP EL+ + + A+E
Sbjct: 120 RLTSELGHRPSLERWAATADIVLSDLRPTLANGKRRWAEIAKLTVEELEQVQSQGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLATELEMTPTQVREV 299
Query: 387 TEAIGKVFSLDREAFPSLNGLPGETHHIHC 416
+ + SL+ + + GE C
Sbjct: 300 LLRVPRSVSLETKVGKDKDTELGELLETDC 329
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 118/190 (62%), Gaps = 2/190 (1%)
Query: 196 YVKGVVS-EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y++G S LLT E + LS+ I+ L L+ + L+ER G +P+ Q AA+ + +
Sbjct: 270 YLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKT 329
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ ++K++ SN+RLV+SIA+ Y G ++ DLVQ G GL+RG EKFD+SKG
Sbjct: 330 LRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKG 389
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
FK STY +WWI+Q V ++L + SRT+RLP H+ E ++ A+ +L E G P+ + +A
Sbjct: 390 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 449
Query: 374 EYLNMSQKKV 383
E +S K++
Sbjct: 450 EATGLSMKRL 459
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ + L + K L ++LG E S+E+ + ++
Sbjct: 20 VRTYLREIGRVPLLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ ++E A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 TELKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +P
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L++ ++R + SLD
Sbjct: 200 IAKELDLEPAQIREYLNMARQPVSLD 225
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 118/190 (62%), Gaps = 2/190 (1%)
Query: 196 YVKGVVS-EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y++G S LLT E + LS+ I+ L L+ + L+ER G +P+ Q AA+ + +
Sbjct: 267 YLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKT 326
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ ++K++ SN+RLV+SIA+ Y G ++ DLVQ G GL+RG EKFD+SKG
Sbjct: 327 LRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKG 386
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
FK STY +WWI+Q V ++L + SRT+RLP H+ E ++ A+ +L E G P+ + +A
Sbjct: 387 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 446
Query: 374 EYLNMSQKKV 383
E +S K++
Sbjct: 447 EATGLSMKRL 456
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ERL +P + AA +
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVS 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 140 LPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 259
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 260 EEEIATRMEMTIEKLR 275
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASL----------------------RISRPELQSILMECSLARE 267
RL LG PS+E+ A ++S EL++I ME A+E
Sbjct: 118 RLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREWAKVAKLSVEELETIQMEGIRAKE 177
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 178 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 237
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG T +++ IA+ L+M+ +VR
Sbjct: 238 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATMEDIAKELDMTPPQVREV 297
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 298 LLRVPRSVSLE 308
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 140/237 (59%), Gaps = 13/237 (5%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQLAASLRIS 251
++ Y++ + LLTH + + L ++++ + L++ + L+ R G + PS + A++ +S
Sbjct: 22 VRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLS 81
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 82 PALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 141
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP++
Sbjct: 142 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLS 201
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSL--------DREAFPSLNG---LPGETHHIHC 416
+A + + +++V++ + SL D E L G LP E+ C
Sbjct: 202 ELAVCVELPEEEVKDLLCRARQPVSLETKVGDGEDTELLDLLQGDGTLPAESVDSEC 258
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++ + K L ++LG EP++++ + L I +
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQ 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L L + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 KALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE---KGVTPSV 369
KG+K STY YWWIRQ ++RA+ + SRT+RLP H+ E+L I+ + L + + TPS
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKIKKTQRELSQTLGRSATPS- 198
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 199 -EIAQELEIEPSQIREFLSIARQPISLD 225
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L + L P+ + AAS+
Sbjct: 65 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVE 124
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 125 MELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 184
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 185 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPT 244
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA ++ M+ +K+R
Sbjct: 245 EEEIATHMEMTIEKLR 260
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 130/194 (67%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL++ + + L + ++ ++L++ + + G +P++++LA++ ++
Sbjct: 28 IRSYLRDIGRVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAGLTV 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L+ A+E++V +N+RLV+SIA++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 88 GALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 147
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L ++ TPSV
Sbjct: 148 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRDLSQQLSRTPSVAE 207
Query: 372 IAEYLNMSQKKVRN 385
+AEY+++S+++V++
Sbjct: 208 LAEYIDVSEEEVKD 221
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L++ ++R + SLD
Sbjct: 193 RSATPAEIALELDLEPAQIREYLSMARQPISLD 225
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 132/216 (61%), Gaps = 4/216 (1%)
Query: 173 QQNGSKQLRSM-ISPELI--QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
Q+ K L S+ I P+ + ++ ++ Y++ + LL E + L++KI L+L++ +
Sbjct: 94 QEASDKTLASIKIGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAI 153
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
+ + G PS ++ AA + + + LM A+EK+V SN+RLV+SIA++Y N G
Sbjct: 154 QFESENGHYPSKKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGL 213
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
DL+Q G +GL+R EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E
Sbjct: 214 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 273
Query: 350 LGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
+ I + K+ +E G PS + IAE + M+ +K+R
Sbjct: 274 ISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLR 309
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L + K +L LG EP++ + A
Sbjct: 13 PTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++S EL + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 NQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L ++ G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA+ L++ ++R + SLD
Sbjct: 193 RSATPAEIAKALDLEPAQIREFLSMSRQPISLD 225
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 119/185 (64%), Gaps = 1/185 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ +++ + L++ LG +P+ +AA L+I+ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 141 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 200
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L+++ G P+ +A
Sbjct: 201 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQRLGRNPNEIEMA 260
Query: 374 EYLNM 378
E L +
Sbjct: 261 EALEI 265
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269
E V LS+ I+ L L+ + LKER G EPS Q AA+ + + L+ L L ++K+
Sbjct: 274 EEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKM 333
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 329
+ SNVRLV+SIA+ Y G ++ DLVQ G GL+RG EKFD+SKGFK STY +WWI+Q V
Sbjct: 334 IKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 393
Query: 330 SRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
++L + SRT+RLP H+ + ++ A+ +L E G P +AE +S K++
Sbjct: 394 RKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRL 448
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 118/186 (63%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L+ +LG +PS Q+A+ L I+ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKG 200
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K P+ +A
Sbjct: 201 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMA 260
Query: 374 EYLNMS 379
E L ++
Sbjct: 261 EALEIT 266
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 127/195 (65%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK G E + E LA +S
Sbjct: 33 VRSYLRDIGRVPLLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAPEALAKKAGLS 92
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 93 GVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 152
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 153 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVT 212
Query: 371 RIAEYLNMSQKKVRN 385
+AE++ + +++V++
Sbjct: 213 ELAEFVELPEEEVKD 227
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +S+ D K L ++L EP++++ A+ +++S
Sbjct: 21 VRTYLREIGRVPLLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSE 80
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 81 ADLHDTVRRGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPT 140
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L ++ G +PS
Sbjct: 141 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKIQRELAQRLGRSPSPAE 200
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L + ++R + SLD
Sbjct: 201 IATELELEPSQIREYLNLARQPVSLD 226
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 114/191 (59%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRI----------------------SRPELQSILMECSLARE 267
RL +LG PS+E+ AA I + P+L+ I E A+E
Sbjct: 126 RLASQLGHRPSLERWAAEAHIALSELKPTLVAGKRSWAEVAGLTVPDLEQIQKEGLQAKE 185
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 186 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGYRFSTYAYWWIRQ 245
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ + +L + +G TP+++ IA L M+ +VR
Sbjct: 246 GITRAIATQSRTIRLPVHITEKLNKIKKVQRQLSQTQGHTPTIEEIAAALEMTPPQVREV 305
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 306 LLRVPRSVSLE 316
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL+ I E A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +K
Sbjct: 164 ELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 223
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
G++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ I
Sbjct: 224 GYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTIEDI 283
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A L M+ +VR + + SL+
Sbjct: 284 ARELEMTSPQVREVLLRVPRSVSLE 308
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 126/210 (60%), Gaps = 12/210 (5%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L + K L +L EPS+ + A
Sbjct: 13 PTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++S EL + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 NHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE--- 362
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLG 192
Query: 363 KGVTPS---------VDRIAEYLNMSQKKV 383
+ TPS D+I E+L+MS++ +
Sbjct: 193 RSATPSEIAKALDLEPDQIREFLSMSRQPI 222
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 106/169 (62%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++++K + + L E+LG P+ +QLA +L + E
Sbjct: 68 AFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKE 127
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L L + +A+ +++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG
Sbjct: 128 LDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKG 187
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L+++
Sbjct: 188 YKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRDLKQE 236
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL D K L ++L EPS+ + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 TEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L + G +PS
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL D K L ++L EPS+ + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 TEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L + G +PS
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + K+++ + + K +L ++L EPS + A + ++
Sbjct: 26 VRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVELTE 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL IL A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD
Sbjct: 86 DELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWW+RQ ++RA+ +N RT+RLP H+ E+L I+ + L +K G P+
Sbjct: 146 RGYKFSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLNKIKRVQRDLVQKYGRNPTPTE 205
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IAE L + ++R A SLD
Sbjct: 206 IAEALELEPSQIREYLLASRHPISLD 231
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+ LG +PS ++A+ ++ +
Sbjct: 69 AFFKEMARYPLLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 188
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K PS +A
Sbjct: 189 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMA 248
Query: 374 EYLNMS 379
E L +S
Sbjct: 249 ESLEIS 254
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ++L EP + A +
Sbjct: 69 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVE 128
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 129 MELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 188
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 189 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPT 248
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA+ + M+ +K+R
Sbjct: 249 EEEIADRMEMTIEKLR 264
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 78 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQ 137
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 138 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 197
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 198 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 257
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 258 EEEIATRMEMTIEKLR 273
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQ 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 140 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 259
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 260 EEEIATRMEMTIEKLR 275
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 127/195 (65%), Gaps = 2/195 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK G + + E LA +S
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLS 72
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD
Sbjct: 73 GVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDP 132
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVD 370
++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+V
Sbjct: 133 TRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVT 192
Query: 371 RIAEYLNMSQKKVRN 385
+AE++ + +++V++
Sbjct: 193 ELAEFVELPEEEVKD 207
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++ + K L ++LG EP++++ + L I +
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQ 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L L + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 KALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE---KGVTPSV 369
KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L + + TPS
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPS- 198
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 199 -EIAQELEIEPSQIREFLSIARQPISLD 225
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL D K L ++L EPS+ + A + S
Sbjct: 45 VRTYLREIGRVPLLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSE 104
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 105 TEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 164
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L + G +PS
Sbjct: 165 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAE 224
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 225 IAKELELEPAQIREYLNMARQPVSLD 250
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 2/192 (1%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL E ++L+ +K ++ +L L E LG PS E+ AA L+
Sbjct: 59 EDTVGAFFKEMARYPLLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLK 118
Query: 250 ISR-PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
I+ EL S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EK
Sbjct: 119 IATIRELNSQLYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEK 178
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTP 367
FD +KG+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K P
Sbjct: 179 FDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQKLQRNP 238
Query: 368 SVDRIAEYLNMS 379
S +A+ L++S
Sbjct: 239 SETELAQELDIS 250
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 122/201 (60%), Gaps = 6/201 (2%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-----EPSMEQL 244
++ ++ Y++ + LL E + L++KI L ++ + RL + LGC E + E
Sbjct: 102 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNPEPW 161
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A L ++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 162 AKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 221
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEK 363
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E
Sbjct: 222 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEM 281
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + IA+ + M+ +K+R
Sbjct: 282 GRKPTEEEIADRMEMTIEKLR 302
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L +RL EP + A +++
Sbjct: 81 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWAEAVK 140
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 141 QNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 200
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 201 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 260
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 261 EEEIATRMEMTIEKLR 276
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+ ++G P+ Q+A L I+ +
Sbjct: 82 AFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQ 141
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 142 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 201
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K PS +A
Sbjct: 202 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMA 261
Query: 374 EYLNMS 379
E L +S
Sbjct: 262 EALEIS 267
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 123/208 (59%), Gaps = 5/208 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ +SL + K L + LG EPS+++ A + +
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L L + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 KALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE---KGVTPSV 369
KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L + + TP+
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPA- 198
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 199 -EIAQELEIEPSQIREFLSIARQPISLD 225
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 120/198 (60%), Gaps = 1/198 (0%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y++ + LL E + L++KI L L+ + L E+L EP + A +
Sbjct: 77 FTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEA 136
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R E
Sbjct: 137 VKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 196
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVT 366
KFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G
Sbjct: 197 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 256
Query: 367 PSVDRIAEYLNMSQKKVR 384
P+ + IA + M+ +K+R
Sbjct: 257 PTEEEIATRMEMTIEKLR 274
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 116/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RLK LG PS+E+ A + IS P EL+ + + A+
Sbjct: 115 RLKAELGHRPSLERWATTAGISLPDLKPTLANGKRRWAEIANLTVEELEQVQTQGLQAKS 174
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 175 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 234
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ + L+M+ +VR
Sbjct: 235 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLGIELDMTPAQVREV 294
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 295 LLRVPRSVSLE 305
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 120/198 (60%), Gaps = 1/198 (0%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y++ + LL E + L++KI L L+ + L E+L EP + A +
Sbjct: 77 FTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEA 136
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R E
Sbjct: 137 VKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 196
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVT 366
KFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G
Sbjct: 197 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 256
Query: 367 PSVDRIAEYLNMSQKKVR 384
P+ + IA + M+ +K+R
Sbjct: 257 PTEEEIATRMEMTIEKLR 274
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 117/186 (62%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+E+LG S ++A+ ++ +
Sbjct: 91 AFFKEMARYPLLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQ 150
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 151 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 210
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K P+ +A
Sbjct: 211 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEVEMA 270
Query: 374 EYLNMS 379
E+L M+
Sbjct: 271 EFLEMT 276
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EPS+E+ A +
Sbjct: 20 VRTYLREIGRVPLLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 TEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +P+
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 117/187 (62%), Gaps = 1/187 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L+ +++ + +D+ RL + LG +P+ +LA +L ++ +
Sbjct: 66 AFFKEMARYPLLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQ 125
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
++ L +++ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD +KG
Sbjct: 126 FENRLYRGQISKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKG 185
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ + L++K TP +A
Sbjct: 186 YKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRELKQKLQRTPDETELA 245
Query: 374 EYLNMSQ 380
E L++S+
Sbjct: 246 EALDISR 252
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 121/204 (59%), Gaps = 1/204 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L+++++ + ++D+ + E L P+ +LA + + +
Sbjct: 159 AFFKEMARYPLLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQ 218
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L + A+ +++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 219 LRQKLRQARAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKG 278
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
+K STY YWWIRQG++R + ++RT+RLP H+ E+L ++ A+ L +E TP+ +A
Sbjct: 279 YKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVA 338
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
L M+ +++R + K SL+
Sbjct: 339 AALEMTPEQLRTLQQVQRKSLSLN 362
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 116/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSIL----------------------MECSLARE 267
RL LG PS+E+ A + I+ EL+ +L + A+E
Sbjct: 144 RLTAELGHRPSLERWAKNAEINVTELKPLLSAGKRRWAEIAGLTVEQLEQIQTQGVRAKE 203
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 204 HMIQANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 263
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ + ++ +EKG TP+++ IA L ++ K++R+
Sbjct: 264 GITRAIATQSRTIRLPVHITEKLNKIKKVQRKIAQEKGRTPTIEEIAAELEITPKQLRDV 323
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 324 LLRVPRSVSLE 334
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++L K +L+ +LG E S+++ A + +S
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EK+D +
Sbjct: 80 AELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G + +
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAQELELDTAQIREYLNVARQPISLD 225
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT E ++LS I+ L L+ + L ER G +P+ Q AA + + L+ L
Sbjct: 260 LLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIF 319
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
++K++ SN+RLV+SIA+ Y G ++ DLVQ G GL++G EKFD +KGFK STY +WW
Sbjct: 320 CKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWW 379
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
I+Q V ++L + SRT+RLP H+ E ++ A+ +L E G P + +AE +S K++
Sbjct: 380 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRL 439
>gi|329934715|ref|ZP_08284756.1| RNA polymerase principal sigma factor HrdA [Streptomyces
griseoaurantiacus M045]
gi|329305537|gb|EGG49393.1| RNA polymerase principal sigma factor HrdA [Streptomyces
griseoaurantiacus M045]
Length = 363
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 134/226 (59%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGSTPDLDSRLAL----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L ++++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 115 -DLDTLVVRGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 173
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G PS +
Sbjct: 174 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPSAEE 233
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A L++S ++V G+V L +E SL+ GE + G
Sbjct: 234 VAAQLDLSPERV-------GEVLRLAQEPV-SLHAPVGEEEDVALG 271
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 120/203 (59%), Gaps = 1/203 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ V +LL E + L ++I+ G+S ++ + L+ G EPS E+ A +L + R EL
Sbjct: 54 YLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREEL 113
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
L S A+ ++ +N+RLV+S+A+RY DL+Q G GL++ EKFD +GF
Sbjct: 114 VKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGF 173
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWI+Q + R + + SR +RLP H+H+ L +R A L + +K G P+ D +AE
Sbjct: 174 KFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAE 233
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+L +S +++ +A S++
Sbjct: 234 HLEVSAVRIQYYRDAAQATLSME 256
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 124/192 (64%), Gaps = 1/192 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 234 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 293
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
P+L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q G +GL++ +EKF
Sbjct: 294 PDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 353
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 371
G + +TY YWWIRQ + +++ +NSRT+RLP +++ LG + A K ++E PS ++
Sbjct: 354 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQ 413
Query: 372 IAEYLNMSQKKV 383
+A ++ +S +K+
Sbjct: 414 LAGHVGVSTEKL 425
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECS----------------------LARE 267
RL LG PS+E+ AA+ I+ +L+ IL E ++E
Sbjct: 120 RLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LLRVPRSVSLE 310
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L + K L ++L EPS+ + AA + S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 TDVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +P+
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPVE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ AA+ I+ +L+ IL E ++E
Sbjct: 120 RLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LLRVPRSVSLE 310
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 259 EEEIATRMEMTIEKLR 274
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EP M + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+Q + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 TEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L + G +P+
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 120/210 (57%), Gaps = 23/210 (10%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILM----------------------ECSLARE 267
RL LG PS+E+ A + I P+L+ L + A+E
Sbjct: 116 RLSSELGHRPSLERWATTAGIELPDLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKE 175
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 176 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 235
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L M+ +VR
Sbjct: 236 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPAQVREV 295
Query: 387 TEAIGKVFSLDREAFPSLNGLPGETHHIHC 416
+ + SL+ + + GE C
Sbjct: 296 LLRVPRSVSLETKVGKDKDTELGELLETDC 325
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECS----------------------LARE 267
RL LG PS+E+ AA+ I+ +L+ IL E ++E
Sbjct: 120 RLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LLRVPRSVSLE 310
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 83 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 142
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 143 MPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 202
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 203 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 262
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 263 EEEIAESMEMTIEKLR 278
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
++ Y++ + LLTH E V L K+++ + L + + L+ G +PS + AA+ +S
Sbjct: 12 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 71
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 72 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDP 131
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDR 371
+KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ + +L ++ T ++
Sbjct: 132 TKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLSTATLPE 191
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ +VR+ E SLD
Sbjct: 192 LAAALDLTPAQVRDYLEKARHPLSLD 217
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 118/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRI----------------------SRPELQSILMECSLARE 267
RL +LG PS+E+ AA+ + S EL+ I + + A+E
Sbjct: 121 RLVSQLGHRPSLERWAATAGVEVSDLKPILAAGKQRWAELAGLSVKELEQIQSQGNRAKE 180
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 181 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 240
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG T +++ IA L M++++VR
Sbjct: 241 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIALELEMTKEQVREV 300
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 301 LLRVPRSVSLE 311
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 116/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ A + I +L+ L+E A+E
Sbjct: 121 RLSSELGHRPSLERWAKTAGIDLADLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAKE 180
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 181 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 240
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 241 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTLEDLAIELDMTPTQVREV 300
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 301 LLRVPRSVSLE 311
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 23/222 (10%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASL----------------------RISRPEL 255
I+ L L + + RL LG PS+E+ A + +++ EL
Sbjct: 108 IEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLSDLKPTLANGKRRWAEIAKLTVEEL 167
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ I + A+E ++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG+
Sbjct: 168 EQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 227
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A
Sbjct: 228 RFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAV 287
Query: 375 YLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHC 416
L M+ +VR + + SL+ + + GE C
Sbjct: 288 ELEMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLETDC 329
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G
Sbjct: 133 VEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLG 192
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IA L + ++R + SLD
Sbjct: 193 RSATPAEIALELELEPAQIREYLSMARQPISLD 225
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 131/207 (63%), Gaps = 1/207 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + +LLT E V LS +I+ L L++ K L+ +G ++ + + ++ + +
Sbjct: 264 VRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQ 323
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ L + A++K+V SN+RLV+SIA+ Y G + DL+Q G +GL+RG EKFD +
Sbjct: 324 NAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPT 383
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK-LRLEEKGVTPSVDR 371
KGFK STY +WWIRQ V+R++ + SRT+RLP HL+E + I AK + ++E G +
Sbjct: 384 KGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEE 443
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDR 398
+AE + ++ +K+++ ++ S++R
Sbjct: 444 VAELVGLTVEKLKSVVKSAKAPGSMER 470
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL++I + A+ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +K
Sbjct: 154 ELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 213
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
G++ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ +EKG TP +D +
Sbjct: 214 GYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEV 273
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
AE L M+ ++VR + + SL+
Sbjct: 274 AEELGMTPEQVREVLTQVPRSVSLE 298
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + + ++L EP+ A ++
Sbjct: 93 EDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVD 152
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L + A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 153 MPLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 212
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 213 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPT 272
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 273 EEEIATRMEMTIEKLR 288
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 259 EEEIATRMEMTIEKLR 274
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A + +++ EL+ I + A+E ++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R
Sbjct: 160 AETAKLTVQELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLER 219
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEK 363
+EKFD +KG++ STY YWWIRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EK
Sbjct: 220 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEK 279
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G TP+++ +A L M+ +VR + + SL+
Sbjct: 280 GRTPTLEDLAVELEMTPAQVREVLLRVPRSVSLE 313
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L ++L +P + A +++
Sbjct: 78 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQ 137
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 138 VPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 197
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 198 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 257
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 258 EEEIATRMEMTIEKLR 273
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 12/210 (5%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L D K L E+ EP+ + A
Sbjct: 13 PLFTADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
A + +S EL I+ A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 73 AQVHLSEDELTRIITLGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERG 132
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-- 363
+EKFD +G+K STY YWWIRQ ++RA+ + +R +RLP H+ E+L I+ + L +K
Sbjct: 133 VEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKTQRELAQKLG 192
Query: 364 -GVTPSVDRIA---------EYLNMSQKKV 383
TP+ +A EYLN++++ V
Sbjct: 193 RHATPTEIAVALELEPAQIREYLNIARQPV 222
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 128/207 (61%), Gaps = 2/207 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
++ Y++ + LLTH E V L K+++ + L + + L+ G +PS + AA+ +S
Sbjct: 18 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 77
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 78 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDP 137
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
+KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ + +L ++ G T ++
Sbjct: 138 TKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLP 197
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ +VR+ E SLD
Sbjct: 198 ELAAALDLTPAQVRDYLEKARHPLSLD 224
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LKERL + A + S EL+ I + A+E ++ +N+RLV+S+A++Y N G +
Sbjct: 145 LKERLSV--GKHRWAEVVNCSVKELERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLE 202
Query: 291 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
+ DL+Q G +GL R +EKFD +KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L
Sbjct: 203 LLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKL 262
Query: 351 GLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
I+ A+ ++ +EKG TP ++ +A+ L+M+ ++R + + SL+
Sbjct: 263 NKIKKAQRKISQEKGHTPRIEDLAQELDMTAGQIREVLLRVPRSVSLE 310
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 128/207 (61%), Gaps = 2/207 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
++ Y++ + LLTH E V L K+++ + L + + L+ G +PS + AA+ +S
Sbjct: 12 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 71
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 72 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDP 131
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
+KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ + +L ++ G T ++
Sbjct: 132 TKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLP 191
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L+++ +VR+ E SLD
Sbjct: 192 ELAAALDLTPAQVRDYLEKARHPLSLD 218
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT+ + + K+++ ++L K L+++L E S+++ + S +IS
Sbjct: 21 VRSYLHEIGRVPLLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISE 80
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
PEL +L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 81 PELNRLLKLGQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPM 140
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G P+
Sbjct: 141 KGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRNPNPRE 200
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L + ++R + SLD
Sbjct: 201 IAAELELETSQIREYLSIARQPISLD 226
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 122/210 (58%), Gaps = 23/210 (10%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECS----------------------LARE 267
RL LG PS+E+ A++ + EL+ IL + ++E
Sbjct: 120 RLASELGHRPSIERWASAAGVEVLELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A+ L M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAQELEMTPTQVREV 299
Query: 387 TEAIGKVFSLDREAFPSLNGLPGETHHIHC 416
+ + SL+ + + GE C
Sbjct: 300 LLRVPRSVSLETKVGKDKDTELGELLETDC 329
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 181 RSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
+ +++ E+ N Y++ S +LLT E LS I+ L L+ + L ER G +P
Sbjct: 247 KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQP 306
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299
+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G ++ DLVQ G
Sbjct: 307 TFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGC 366
Query: 300 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359
GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E ++ A+ +
Sbjct: 367 RGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQ 426
Query: 360 L-EEKGVTPSVDRIAEYLNMSQKKV 383
L E G P + IAE +S K++
Sbjct: 427 LYSETGKHPKNEEIAEATGLSMKRL 451
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++++K + ++ + RL+ + +P+ ++A L +S +
Sbjct: 76 AFFKEMARYPLLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQ 135
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 136 LEHRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKG 195
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L+++ PS +A
Sbjct: 196 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLQRNPSEVELA 255
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
++L +S + +R + K SL+
Sbjct: 256 QFLEISAEHLRQLLQLRRKSLSLN 279
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 118/186 (63%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L +LG EP+ ++A+ L ++ +
Sbjct: 70 AFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQ 129
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 130 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 189
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV-TPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K P+ +A
Sbjct: 190 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMA 249
Query: 374 EYLNMS 379
E L++S
Sbjct: 250 EALDIS 255
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL++I + A+ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +K
Sbjct: 135 ELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 194
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
G++ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ +EKG TP +D +
Sbjct: 195 GYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEV 254
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
AE L M+ ++VR + + SL+
Sbjct: 255 AEELGMTPEQVREVLTQVPRSVSLE 279
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E+L +P + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 259 EEEIATRMEMTIEKLR 274
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSIL--------------------MECS--LARE 267
RL LG PSME+ A++ + EL+ IL M+ S ++E
Sbjct: 146 RLASELGHRPSMERWASTAGVDVFELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSKE 205
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 206 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 265
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L M+ VR
Sbjct: 266 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPTAVREV 325
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 326 LLRVPRSVSLE 336
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 140 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVE 199
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 200 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 259
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 260 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 319
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 320 EEEIAESMEMTIEKLR 335
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + LKE+ G +PS ++AA ++ +
Sbjct: 79 AFFKEMARYPLLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQ 138
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 139 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKG 198
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L+++ G PS +A
Sbjct: 199 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELA 258
Query: 374 EYLNM 378
E L +
Sbjct: 259 ESLEI 263
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L L EP + + A ++
Sbjct: 75 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVD 134
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 135 MELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 194
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 195 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 254
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 255 EEEIATSMEMTIEKLR 270
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP+ ++ A ++
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVD 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 136 MRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 195
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 196 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 255
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 256 EEEIATRMEMTIEKLR 271
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASL----------------------RISRPELQSILMECSLARE 267
RL LG PS+E+ AA+ +I+ EL+ I + ++E
Sbjct: 120 RLASELGHRPSLERWAATAGVQLSDLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LLRVPRSVSLE 310
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL I E A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +K
Sbjct: 205 ELDQIQKEGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 264
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
G++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG TPS++ I
Sbjct: 265 GYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDI 324
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A L M+ +VR + + SL+
Sbjct: 325 ATELEMTVPQVRELLVRVPRSVSLE 349
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 160 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVE 219
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 220 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 279
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 280 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 339
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 340 EEEIAESMEMTIEKLR 355
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ +LK +L EP + A ++
Sbjct: 72 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVE 131
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 132 MPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 191
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 192 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 251
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 252 EEEIATRMEMTIEKLR 267
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT + + K+++ +SL + K +L ++LG E + ++ A +++
Sbjct: 20 VRTYLHEIGRVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 EELEKTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KGFK STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L ++ G PS
Sbjct: 140 KGFKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L + ++R + SLD
Sbjct: 200 IARELELQPAQIREYLSVARQPISLD 225
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP+ ++ A ++
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVD 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 136 MRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 195
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 196 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 255
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 256 EEEIATRMEMTIEKLR 271
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 137/243 (56%), Gaps = 4/243 (1%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSE---ELLTHAEVVRLSKKIKTGLSLDDHK 228
++ S + + +++ E+ N Y++ S +LLT E LS I+ L L+ +
Sbjct: 238 VKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDLLKLERLQ 297
Query: 229 LRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 288
L ER G +P+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G
Sbjct: 298 TELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAG 357
Query: 289 ADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE 348
++ DLVQ G GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E
Sbjct: 358 MNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVE 417
Query: 349 RLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGL 407
++ A+ +L E G P + IAE +S K++ + SLDR+ + N
Sbjct: 418 ATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLK 477
Query: 408 PGE 410
P E
Sbjct: 478 PSE 480
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP+ ++ A ++
Sbjct: 61 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVD 120
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 121 MRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 180
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 181 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 240
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 241 EEEIATRMEMTIEKLR 256
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 129/215 (60%), Gaps = 1/215 (0%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
++ + + ++ Y++ + LL+ + + K+++ ++L + K L++ + EPS+ +
Sbjct: 11 VNAKFTADMVRTYLREIGRVPLLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSE 70
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
AA + S EL ++++ A++K++ +N+RLV++IA++Y + DL+Q G +GL
Sbjct: 71 WAARVNQSETELNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 130
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
RG+EKFD +G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +
Sbjct: 131 RGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQT 190
Query: 364 -GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G +P+ IA+ L + ++R + SLD
Sbjct: 191 LGRSPTPTEIAKELELEPAQIREYLNMARQPVSLD 225
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 140 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVE 199
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 200 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 259
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 260 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 319
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 320 EEEIAESMEMTIEKLR 335
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A +S EL I+ + A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R
Sbjct: 164 AEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 223
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEK 363
+EKFD +KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ +L + K
Sbjct: 224 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQSK 283
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G T S++ IA+ ++M+ +++R + + SL+
Sbjct: 284 GRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLE 317
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A +S EL I+ + A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R
Sbjct: 164 AEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 223
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEK 363
+EKFD +KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ +L + K
Sbjct: 224 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQSK 283
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G T S++ IA+ ++M+ +++R + + SL+
Sbjct: 284 GRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLE 317
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 120/203 (59%), Gaps = 23/203 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM----------------- 260
+ T + L + + RL +LG PS+E+ A + + P+L+ L
Sbjct: 123 LATYVHLLNTRARLTAQLGHRPSLERWAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEI 182
Query: 261 -----ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
E + A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG+
Sbjct: 183 VEIQNEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 242
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ + +G T + IA+
Sbjct: 243 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAK 302
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L+M+ ++R + + SLD
Sbjct: 303 ELDMTVAQIREVLLKVPRSVSLD 325
>gi|22298042|ref|NP_681289.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
gi|22294220|dbj|BAC08051.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 375
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 140/252 (55%), Gaps = 41/252 (16%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSL-------DDHKL----------- 229
L + ++ Y++ + LLT +E +RL+++++ +L DD +L
Sbjct: 19 LTTDLVRQYLQEIGRVPLLTPSEELRLAEQVQQYQALLAVRDQSDDPQLKRYVAAVRERD 78
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILM----------------------ECSLARE 267
RL+ LG S Q AA L++S ELQ+ + + A+
Sbjct: 79 RLRPLLGRPLSRAQWAAGLKMSVAELQTCVQAGRQAWAKAANITLSELQHIERQGQRAKN 138
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+L+ +N+RLV++IA++Y + G + DL+Q G +GL R +EKFD +KGF+ STY YWWIRQ
Sbjct: 139 QLLQANLRLVVNIAKKYQHHGVEFLDLIQEGSLGLERAVEKFDPTKGFRFSTYAYWWIRQ 198
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
++RA+ SRT+RLP H+ E+L I+ A+ RL ++G PS+ IA+ LN+ +VR
Sbjct: 199 SITRAVASQSRTIRLPIHMVEKLNKIKRAQRRLAAQRGAMPSLADIAQELNLEVSQVRQV 258
Query: 387 TEAIGKVFSLDR 398
A+ K +L++
Sbjct: 259 LMAVPKSVALEQ 270
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL LG PS+E+ A + I +P EL+ I + A+E
Sbjct: 120 RLSSELGHRPSLERWATTAGIELSNLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LLRVPRSVSLE 310
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 127/214 (59%), Gaps = 2/214 (0%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLR 230
++ S + + +++ E+ N Y++ S +LLT E LS I+ L L+ +
Sbjct: 238 VKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTE 297
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
L ER G +P+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G +
Sbjct: 298 LTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMN 357
Query: 291 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
+ DLVQ G GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E
Sbjct: 358 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 417
Query: 351 GLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
++ A+ +L E G P + IAE +S K++
Sbjct: 418 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 451
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L E+L EP+ + A +
Sbjct: 70 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVD 129
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 130 MALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 189
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 190 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 249
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 250 EEEIATRMEMTIEKLR 265
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP + A ++
Sbjct: 77 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVE 136
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 137 MALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 196
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 197 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 256
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 257 EEEIATRMEMTIEKLR 272
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 127/214 (59%), Gaps = 2/214 (0%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLR 230
++ S + + +++ E+ N Y++ S +LLT E LS I+ L L+ +
Sbjct: 238 VKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTE 297
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
L ER G +P+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G +
Sbjct: 298 LTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMN 357
Query: 291 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
+ DLVQ G GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E
Sbjct: 358 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 417
Query: 351 GLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
++ A+ +L E G P + IAE +S K++
Sbjct: 418 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 451
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL + K L ++L EP+ ++ A + I+
Sbjct: 20 VRTYLREIGRVPLLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAA 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 AELPETIKRGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K G +P+ +
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQKLGRSPNANE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L + ++R + SLD
Sbjct: 200 IAIALELEPAQIREYLNLARQPVSLD 225
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 135/227 (59%), Gaps = 1/227 (0%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
+Q+ K L + P + ++ Y++ + +LLT + V +++++ ++L K L
Sbjct: 11 VQKTKKKSLAADKKPRATDDIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLLAAKEEL 70
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
+L EP++++ A + + L+ L + A++K++ +N+RLV+++A++Y + +
Sbjct: 71 AVKLDHEPTLQEWADRVELGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEF 130
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
DL+Q G +GL RG++KFD + G+K STY YWWIRQG++RA+ + RT+RLP H+ E+L
Sbjct: 131 MDLIQEGTLGLERGVDKFDPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVFEKLN 190
Query: 352 LIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
I+ + L ++ G P+ IA L+++ +VR + FSL+
Sbjct: 191 KIKRVQRELSQQLGRVPTTAEIANALSLTPSQVRECLYLARQPFSLE 237
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL +LG PS+E+ A + I +P EL+ + E A+E
Sbjct: 121 RLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQAKE 180
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 181 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 240
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +E+G T ++D IA L M+ +VR
Sbjct: 241 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQERGRTATIDDIAVELEMTAAQVREV 300
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 301 LLRVPRSVSLE 311
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 128/214 (59%), Gaps = 4/214 (1%)
Query: 175 NGSKQLRSM-ISPELI--QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
G+K L S+ + P+ + ++ ++ Y++ + LL E + L++KI L L++
Sbjct: 103 KGAKALASIKVGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEF 162
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
+ G P ++ AA + + + LM A+EK+V+SN+RLV+SIA++Y N G
Sbjct: 163 EADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSF 222
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
DL+Q G +GL+R EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E +
Sbjct: 223 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 282
Query: 352 LIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVR 384
I+ L +E G P+ + IAE + M+ +K+R
Sbjct: 283 RIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLR 316
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 153/288 (53%), Gaps = 31/288 (10%)
Query: 98 EEESSELDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRR 157
E E+ EL S E++L +S LE + +R DS S++ P + G AR RR
Sbjct: 15 EMETIELLRSAESVL--PESELELFIDEDDDREEFLDSQSEED----PKSGKGAKAR-RR 67
Query: 158 LNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKK 217
+KKK +++ ++ Y++ + LL E + L++K
Sbjct: 68 AQAKKKHYTEDS-----------------------IRLYLQEIGRIRLLRADEEIELARK 104
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLV 277
I L L+ + +L E EP + A ++ ++ P + L A+EK+V SN+RLV
Sbjct: 105 IADLLELERVREQLLEEYNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLV 164
Query: 278 MSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337
+SIA++Y N G DL+Q G +GL+R EKFD KG+K STY WWIRQ ++RA+ + S
Sbjct: 165 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 224
Query: 338 RTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
RT+RLP HL+E + I + KL +E G P+ + IA + M+ +K+R
Sbjct: 225 RTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLR 272
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 140/264 (53%), Gaps = 47/264 (17%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTG--------------------LSLDDHKLRLKERL 235
Y++ + +LL+H E + L+++++ + L+D + RL +L
Sbjct: 25 YLQDIGRVDLLSHEEELTLARQVQRRERLLRERRRLAATHPALQELIDLEDDQQRLASQL 84
Query: 236 GCEPSMEQLAASLR----------------------ISRPELQSILMECSLAREKLVMSN 273
G P+++QLA R +S EL+ L AR++++ +N
Sbjct: 85 GHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAELKQALHHGRRARDRMIQAN 144
Query: 274 VRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAL 333
+RLV+++A++Y G ++ DLVQ G +GL R +EK+D ++GF+ STY YWWIRQG++RA+
Sbjct: 145 LRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKYDPTRGFRFSTYAYWWIRQGITRAI 204
Query: 334 VENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392
SRT+RLP H+ E+L I+ A+ ++ E G SV +A L +S++ VR + +
Sbjct: 205 ATQSRTIRLPVHVTEKLNRIKKAQRQIATEHGRLASVSDLARELGLSEEVVRLTLMRVPR 264
Query: 393 VFSLD----REAFPSLNGLPGETH 412
SLD RE L L ++H
Sbjct: 265 SVSLDTRVGREQDTQLGDLLEDSH 288
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+++ A
Sbjct: 107 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLAD 166
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 167 MPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 226
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 227 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 286
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 287 EEEIAESMEMTIEKLR 302
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + R G P ++ AA +
Sbjct: 149 EDSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVE 208
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S + + LM A+ K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 209 MSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 268
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 269 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 328
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 329 EEEIAESMEMTIEKLR 344
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+++ A
Sbjct: 107 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLAD 166
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 167 MPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 226
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 227 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 286
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 287 EEEIAESMEMTIEKLR 302
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE---PSMEQLAA 246
++ ++ Y++ + LL E + L++KI L L+D + L E+ C+ ++E A
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAV 138
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
+ + + ++ L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 139 EMDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 198
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGV 365
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G
Sbjct: 199 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 258
Query: 366 TPSVDRIAEYLNMSQKKVR 384
PS + IA + M+ +K+R
Sbjct: 259 KPSEEEIATRMEMTIEKLR 277
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECS----------------------LARE 267
RL LG PS+E+ A + + +L+ IL E A+E
Sbjct: 120 RLASELGHRPSLERWANTAGVQVSDLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L M+ +VR
Sbjct: 240 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LLRVPRSVSLE 310
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQLAASLR 249
+ L+ Y++ + LL+H + + L ++++ + L++ + L R G E PS E LAA
Sbjct: 25 DSLRSYLRDIGRVPLLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELLAAEAG 84
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
++ L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKF
Sbjct: 85 LTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D ++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L ++ + L +E G TP+
Sbjct: 145 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPT 204
Query: 369 VDRIAEYLNMSQKKVRN 385
+ +A + + +++V++
Sbjct: 205 LSELALAVELPEEEVKD 221
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 121/194 (62%), Gaps = 1/194 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL+ E + ++++K + L K L E+ EPS+ A ++ ++ +LQ L +
Sbjct: 35 LLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVEMTPTQLQETLDNGEI 94
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+K++ +N+RLV++IA++Y + + DL+Q G +GL RG+EKFD KG+K STY YWW
Sbjct: 95 ARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKFDPDKGYKFSTYAYWW 154
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQ ++RAL + SR++RLP H+ + L I+ A+ L ++ G P++ I+ ++++ ++
Sbjct: 155 IRQAITRALDQKSRSIRLPIHVCQTLKKIKKARRDLTQQLGRNPTISEISSHVSLKPAQI 214
Query: 384 RNATEAIGKVFSLD 397
++ + SLD
Sbjct: 215 QDYLHMSRQPVSLD 228
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ +L++RLG P+ + A ++
Sbjct: 63 EDSIRVYLQEIGRIRLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVE 122
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P Q L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 123 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 182
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E P+
Sbjct: 183 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPT 242
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 243 EEEIATRMEMTIEKLR 258
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 144/265 (54%), Gaps = 9/265 (3%)
Query: 134 DSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRL 193
D P +H + C +S L K ++ K+ + S+ RS S + +
Sbjct: 36 DYPDCLSHSLLGGRCQFISC----LGRVKLTMATAKTTQTELTSRNPRSGASMDAV---- 87
Query: 194 KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP 253
+ Y+ + LLT E + KK++ +SL + + L + L +P+ + +A +S
Sbjct: 88 RTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSES 147
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 148 EMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMR 207
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
G+K STY YWWIRQ ++RA+ +NSRT+RLP H+ E+L I+ + L ++ G + I
Sbjct: 208 GYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEI 267
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L++ ++R+ A SLD
Sbjct: 268 AKALDLEPSQIRDYLLASRHPVSLD 292
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 147 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVE 206
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 207 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 266
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 267 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 326
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 327 EEEIAESMEMTIEKLR 342
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y++ + LLT + + ++ ++ ++L + + L ++L EP+ +LA
Sbjct: 2 PSLSSDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELA 61
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
L + ++ IL A++K++ +N+RLV+SIA++Y + DLVQ G IGL RG
Sbjct: 62 NFLNKTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRG 121
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKG 364
IEKFD ++G+K+STY YWW+ Q ++RA+ E SRT+RLP H++E+L I+ + + G
Sbjct: 122 IEKFDPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPIHVNEKLNQIKKVQREFFQTLG 181
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+V IA+ L + ++R + SLD
Sbjct: 182 RRATVAEIAQKLELEPSQIREYLKVASGTISLD 214
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + L K+++ + L D + L LG EP++ +LA +
Sbjct: 18 VRTYLHEIGRVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPP 77
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L L + A++K++ +N+RLV+S+A++Y ++ DL+Q G +GL RG+EKFD +
Sbjct: 78 EKLNLALRKGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPT 137
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE---KGVTPSV 369
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L + + TP+
Sbjct: 138 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELSQGLGRSATPA- 196
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 197 -EIAQALELEPAQIREYLTLSRQPISLD 223
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 124 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVE 183
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 184 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 243
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 244 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 303
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 304 EEEIAESMEMTIEKLR 319
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ +SL + + L + L +P+ + +A +S
Sbjct: 25 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD
Sbjct: 85 SEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQ ++RA+ +NSRT+RLP H+ E+L I+ + L ++ G +
Sbjct: 145 RGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L++ ++R+ A SLD
Sbjct: 205 IAKALDLEPSQIRDYLLASRHPVSLD 230
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 3/205 (1%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRISRPE 254
++K V S ELL+ E + LS++I+ + L+ K RL R+G EP ++ A A+ P
Sbjct: 108 FIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPA 167
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA-DMADLVQGGLIGLLRGIEKFDSSK 313
QS +++ AR +LV SN+R V+SIA++Y N + DL+Q G IGL++ E+FD K
Sbjct: 168 FQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLDK 227
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
GFK TY WWIRQ + R+L + RT+RLP H+H+ L LI+ + +L + G P+ + +
Sbjct: 228 GFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEEL 287
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ LN+ ++ T+A SL+
Sbjct: 288 ADELNIPVSRLAFITQAASLPISLE 312
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILM----------------------ECSLARE 267
R+ +LG PS+E+L+ I EL+ L E + A+E
Sbjct: 138 RMAAQLGHRPSLERLSKECGIESIELKPTLQAGKRQWAELVGMSVQELDEACSEGTRAKE 197
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 198 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 257
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ + KG T +V+ IA L M+ +VR
Sbjct: 258 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTKGRTATVEDIARELKMTAPQVREV 317
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 318 LLKVPRSISLE 328
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 121/194 (62%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LL H + + K+++ +SL K +L +L +P+ + A +++S
Sbjct: 25 VRTYLHEIGRIPLLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL L + A+E+++ +N+RLV+SIA++Y D DL+Q G +GL RG+EKFD +
Sbjct: 85 SELLQQLQQGYQAKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQEGSLGLERGVEKFDPT 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ E RT+RLP HL E+L I+ + L +K G TPS
Sbjct: 145 RGYKFSTYAYWWIRQAITRAIAEQGRTIRLPIHLTEKLNKIKRTQRELAQKLGHTPSTTE 204
Query: 372 IAEYLNMSQKKVRN 385
IA L++ K++R+
Sbjct: 205 IAAELSLDPKEIRD 218
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 110/171 (64%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + +LTH + + K+++ ++L + K L ++L EP+ +LA+ +S
Sbjct: 20 VRTYLHEIGRVPMLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNLSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I+ A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 DELKGIMHRGRRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTMGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L +K
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELSQK 190
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 121/210 (57%), Gaps = 23/210 (10%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL LG PS+E+ A + I +P EL+ + + A+E
Sbjct: 146 RLTSELGHRPSLERWANTAGIELVDLKPTLANGKRRWAEIAQLTVEELEQVQSQGLQAKE 205
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 206 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 265
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L M+ +VR
Sbjct: 266 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPTQVREV 325
Query: 387 TEAIGKVFSLDREAFPSLNGLPGETHHIHC 416
+ + SL+ + + GE C
Sbjct: 326 LLKVPRSVSLETKVGKDKDTELGELLETDC 355
>gi|302551232|ref|ZP_07303574.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
gi|302468850|gb|EFL31943.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
Length = 438
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL L QLA
Sbjct: 142 FRQYLREIGRVPLLTAAEEVELARRVEAGL-FAEEKLRLAPDLDS-----QLAV------ 189
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 190 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 248
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 249 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEE 308
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L + ++V G+V L +E SL+ GE + G
Sbjct: 309 VAAHLELPPERV-------GEVLRLAQEPV-SLHAPVGEEDDVALG 346
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 130/217 (59%), Gaps = 5/217 (2%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
SM+S +++ + Y+ + LLTH + + L K+++ + L + + +L L P+
Sbjct: 13 SMVSTDMV----RTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTA 68
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E+ A +S +L + + A++K++ +N+RLV+S+A++Y ++ DL+Q G +G
Sbjct: 69 EEWAEQANLSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLG 128
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
L RG+EKFD ++G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ A+ L
Sbjct: 129 LERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTVRLPIHITEKLNKIKKAQRVLS 188
Query: 362 EK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
++ G + + IA+ L + ++R + SLD
Sbjct: 189 QRLGRSATPAEIAQELELEPSQIREYLTLARQPVSLD 225
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ +SL + + L + L +P+ + +A +S
Sbjct: 25 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD
Sbjct: 85 SEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQ ++RA+ +NSRT+RLP H+ E+L I+ + L ++ G +
Sbjct: 145 RGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPTE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L++ ++R+ A SLD
Sbjct: 205 IAKALDLEPSQIRDYLLASRHPVSLD 230
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q G +GL++ +EKF
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 371
G + +TY YWWIRQ + +++ +NSRT+RLP +++ LG + A K ++E PS +
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414
Query: 372 IAEYLNMSQKKV 383
+A ++ +S +K+
Sbjct: 415 LAGHVGVSTEKL 426
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 122/203 (60%), Gaps = 12/203 (5%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ + L + K L ++L EP++E+ A +
Sbjct: 20 VRTYLREIGRVPLLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 AELNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +P+
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAE 199
Query: 372 IA-----------EYLNMSQKKV 383
IA EYLNM+++ V
Sbjct: 200 IAKELELEPLQIREYLNMARQPV 222
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ ++L + + L + L +P+ E+ +A +S
Sbjct: 25 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD
Sbjct: 85 SEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 144
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQ ++RA+ +NSRT+RLP H+ E+L I+ + L ++ G +
Sbjct: 145 RGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTE 204
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L++ ++R+ A SLD
Sbjct: 205 IAKALDLEPSQIRDYLLASRHPVSLD 230
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASL----------------------RISRPELQSILMECSLARE 267
RL LG PS+E+ A++ +++ EL I + A+E
Sbjct: 136 RLVSELGHRPSLERWASTAGIKLVDLKPTLSEGKRRWAEIAKLTVEELDQIQSQGIQAKE 195
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 196 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 255
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 256 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLALELDMTPNQVREV 315
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 316 LLRVPRSVSLE 326
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ ++L + + L + L +P+ E+ +A +S
Sbjct: 27 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSE 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD
Sbjct: 87 SEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 146
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
+G+K STY YWWIRQ ++RA+ +NSRT+RLP H+ E+L I+ + L ++ G +
Sbjct: 147 RGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTE 206
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L++ ++R+ A SLD
Sbjct: 207 IAKALDLEPSQIRDYLLASRHPVSLD 232
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + G P+ ++ AA +
Sbjct: 133 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVE 192
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 193 MPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 252
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 253 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 312
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 313 EEEIAESMEMTIEKLR 328
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 123/194 (63%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT+ + + L ++++ +SL+ + L+ G +PS E LA IS
Sbjct: 21 VRSYLRDIGRVPLLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISV 80
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL L A+E++V +N+RLV+S+A++Y ++ DL+Q G IGL+RG+EKFD +
Sbjct: 81 RELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 140
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SR +RLP H+ E L ++ + L + TP++
Sbjct: 141 RGYKFSTYAYWWIRQGITRAIAEKSRIIRLPIHITELLNKLKKGQRELSQHLERTPTMQE 200
Query: 372 IAEYLNMSQKKVRN 385
++ Y+ + ++V++
Sbjct: 201 LSAYVEIPVEEVKD 214
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ +L E L +P + A ++
Sbjct: 61 EDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVD 120
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P+ Q L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 121 MPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 180
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 181 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 240
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 241 EEEIATRMEMTIEKLR 256
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L+ LG PS ++ A +
Sbjct: 66 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDKEWAQQVG 125
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P Q L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 126 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 185
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E P+
Sbjct: 186 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPT 245
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 246 EEEIATRMEMTIEKLR 261
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLA-------ASLR---------------ISRPELQSILMECSLARE 267
RL +LG PS+E+ A A+L+ ++ EL+ + E A+E
Sbjct: 120 RLASQLGHRPSLERWATTAGVDVATLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 239
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +E+G T +++ IA+ L M +VR
Sbjct: 240 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEQGRTATIEDIAKELEMDAPQVREV 299
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 300 LMRVPRSVSLE 310
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + G P+ ++ A+ +
Sbjct: 150 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVE 209
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 210 MPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 269
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 270 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 329
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 330 EEEIAESMEMTIEKLR 345
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL LG PS+E+ A++ I +P EL I + A+E
Sbjct: 133 RLVSELGHRPSLERWASTAGIKLMDLKPTLSEGKRRWGEIAQLTVEELDEIQSQGIQAKE 192
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 193 HMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 252
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +SRT+RLP H+ E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR
Sbjct: 253 GITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLALELDMTPNQVREV 312
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 313 LLRVPRSVSLE 323
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 153 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVD 212
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 213 MPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 272
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ L +E G P+
Sbjct: 273 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPT 332
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 333 EEEIAESMEMTIEKLR 348
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 137/237 (57%), Gaps = 11/237 (4%)
Query: 159 NSKKKILSQNKSILQQ---NGSKQLRSMIS-----PELI--QNRLKGYVKGVVSEELLTH 208
NSK+K L+ SI + NGS + I P+ I ++ ++ Y++ + LL
Sbjct: 44 NSKQKPLNDEGSIENKDEFNGSDEEAKAIGNVKLGPKGIYTEDSIRVYLQEIGRIRLLRP 103
Query: 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268
E + L++KI L L++ + + G PS+ + A + + + L+ A+EK
Sbjct: 104 DEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFRRRLLLGRRAKEK 163
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQG 328
+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+K STY WWIRQ
Sbjct: 164 MVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQA 223
Query: 329 VSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
++RA+ + SRT+RLP HL+E + I + K+ +E G PS + IAE + M+ +K+R
Sbjct: 224 ITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLR 280
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 175 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 234
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q G +GL++ +EKF
Sbjct: 235 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 294
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 371
G + +TY YWWIRQ + +++ +NSRT+RLP +++ LG + A K ++E PS +
Sbjct: 295 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 354
Query: 372 IAEYLNMSQKKV 383
+A ++ +S +K+
Sbjct: 355 LAGHVGVSTEKL 366
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 114/187 (60%), Gaps = 23/187 (12%)
Query: 234 RLGCEPSMEQLAASLRISRPELQSILME----------CSL------------AREKLVM 271
+L PSM++ A SL + PEL+ L C + A+E ++
Sbjct: 125 QLSHRPSMKRWAKSLDMEIPELKEALSRGKASWAQVTGCEVNELEKIQKDGIRAKEHMIK 184
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 331
+N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQG++R
Sbjct: 185 ANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITR 244
Query: 332 ALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390
A+ SRT+RLP H+ E+L I+ A+ ++ +EKG TP ++ ++ L+M+ ++R +
Sbjct: 245 AIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPCIEDLSLELDMTAAQIREVLLRV 304
Query: 391 GKVFSLD 397
+ SL+
Sbjct: 305 PRSVSLE 311
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+ +I+ +++ + +L + LG PS +LA ++ ++ +
Sbjct: 99 AFFKEMARYPLLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQ 158
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 159 LEHQLHRSRVAKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKG 218
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQG++R + +SRT+RLP H+ E+L ++ A+ L+ K P+ +A
Sbjct: 219 YKFSTYAYWWIRQGITRTIANDSRTIRLPVHIVEKLNKLKGAQRDLKRKLNRNPTEAELA 278
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
E L ++ ++++N + + SL+
Sbjct: 279 EALEVTPEQLQNLQQVHRRSLSLN 302
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 115/195 (58%), Gaps = 23/195 (11%)
Query: 226 DHKLRLKERLGCEPSME----------------------QLAASLRISRPELQSILMECS 263
D + RL LG PS+E Q AA ++ EL+ E
Sbjct: 118 DTRDRLASLLGHRPSLERWAAEAGEQVSDLKPILAAGKRQWAALASLTVEELERTQAEGI 177
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
A+E ++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R ++KFD +KG++ STY YW
Sbjct: 178 GAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTYAYW 237
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKK 382
WIRQG++RA+ SRT+RLP H+ E+L I+ A+ +L +EKG T S++ +A+ L M+ +
Sbjct: 238 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTASIEDVAKELEMTPAQ 297
Query: 383 VRNATEAIGKVFSLD 397
VR + + SL+
Sbjct: 298 VREVLLRVPRSVSLE 312
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L+ LG PS ++ A +
Sbjct: 65 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDKEWAEQVG 124
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P Q L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 125 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 184
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E P+
Sbjct: 185 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPT 244
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 245 EEEIATRMEMTIEKLR 260
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 119/195 (61%), Gaps = 20/195 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS- 251
++ Y+K + LLT AE V L+K+I+ GL + E+LAA+ +IS
Sbjct: 104 VRMYLKTIGRVRLLTAAEEVDLAKRIEAGLF----------------ASEKLAATRKISP 147
Query: 252 --RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
R +LQ++ + +A+ KLV +N+RLV+SIA+RY G + DL+Q G +GL+R +EKF
Sbjct: 148 QLRQDLQAVEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRAVEKF 207
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KG+K STY WWIRQ V+RAL + RT+R+P H+ E + + R + L+E G PS
Sbjct: 208 DYTKGYKFSTYATWWIRQAVTRALADQGRTIRIPVHMAETVNKVTRIQRQLLQELGREPS 267
Query: 369 VDRIAEYLNMSQKKV 383
+ I ++++ KV
Sbjct: 268 PEEIGTQIDLTAHKV 282
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 136 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVE 195
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 196 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 255
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 256 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 315
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 316 EEEIAESMEMTIEKLR 331
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 117/187 (62%), Gaps = 3/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+K ++ + +D + RL+ LG +P+ +LA L ++ +
Sbjct: 69 AFFKEMARYPLLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 129 LENRLYRGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKG 188
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV--TPSVDRI 372
+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ G+ P+ + +
Sbjct: 189 YKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQ-GLQRNPNEEEL 247
Query: 373 AEYLNMS 379
A+ L ++
Sbjct: 248 AKALEIT 254
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 29/230 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL + E+LAA+ R +
Sbjct: 95 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAAATRKTS 138
Query: 253 P----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EK
Sbjct: 139 PQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KG+K STY WWIRQ V+RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 199 FDYTKGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 258
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
S + IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 259 SPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 300
>gi|453051815|gb|EME99312.1| RNA polymerase sigma factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 379
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 134/226 (59%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+L +P ++ A
Sbjct: 83 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSNDPDLDTCLAL----- 130
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 131 -DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDYA 189
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 190 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGSEPTAEE 249
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A YL++S+++V +V L +E SL+ GE + G
Sbjct: 250 VAAYLDLSEERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 287
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 132 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVE 191
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 192 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 251
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 252 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 311
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 312 EEEIAESMEMTIEKLR 327
>gi|386840029|ref|YP_006245087.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100330|gb|AEY89214.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793323|gb|AGF63372.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 374
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ A
Sbjct: 78 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGTTPDLDSELAQ----- 125
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 126 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 184
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 185 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEE 244
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+ +L++ ++V G+V L +E SL+ GE + G
Sbjct: 245 VGAHLDLPPERV-------GEVLRLAQEPV-SLHAPVGEEDDVALG 282
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 192 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVD 251
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 252 MPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 311
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ L +E G P+
Sbjct: 312 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPT 371
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 372 EEEIAESMEMTIEKLR 387
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 86 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELID 145
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 146 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 205
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 206 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 265
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 266 EEEIAESMEMTIEKLR 281
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ ++ + G P+ ++ AA +
Sbjct: 127 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVN 186
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 187 MPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 246
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 247 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 306
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 307 EEEIAESMEMTIEKLR 322
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL RLG +PS E+ + +S EL+ I+ L AR
Sbjct: 114 RLAARLGHKPSFERWLKAGNLSMAELKEIIAVGKLRWAKLTGLNVKELEQIQTEGIEARH 173
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+++ +N+RLV+SIA++Y N G ++ DL+Q G +GL R +EKFD +G++ STY YWWIRQ
Sbjct: 174 QMISTNLRLVVSIAKKYQNRGVELLDLIQEGTLGLERAVEKFDPQRGYRFSTYAYWWIRQ 233
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ + ++ +EKG T V+ IA L ++ +VR
Sbjct: 234 GITRAIATQSRTIRLPIHVSEKLNKIKKVQQKIFQEKGYTAKVEEIARELKITAAQVREV 293
Query: 387 TEAIGKVFSLD 397
I SL+
Sbjct: 294 LVKIPHSVSLE 304
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L + K L ++L EPS+ + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+++ + + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 80 TDVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L + G +P+
Sbjct: 140 RGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 200 IAKELELEPAQIREYLNMARQPVSLD 225
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 120/194 (61%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ ++K + S LLT ++VV L+++I+ + +++L+ G EP + A +L +S
Sbjct: 261 MGAFLKEIGSVPLLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSA 320
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL L+ ARE LV +N+RLV+S+A+++ N G M DL+Q G IGL++G E+FD
Sbjct: 321 EELTRNLLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYR 380
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
GF+ STY WWIRQ + RA+ + SR +R+P+ + + I A+L L G P+
Sbjct: 381 TGFRFSTYAMWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAE 440
Query: 372 IAEYLNMSQKKVRN 385
+A++L++S +++++
Sbjct: 441 LADFLDISVQRLQD 454
>gi|172037252|ref|YP_001803753.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|354553864|ref|ZP_08973170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698706|gb|ACB51687.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|353554581|gb|EHC23971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 297
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 28/221 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ E ++L+++I+ L P +E+ A S
Sbjct: 10 VRHYLQSIGKTPLLSGPEEIKLAEEIQAML----------------PLLEKEALS----- 48
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E + I+ + AR+K++ +N+RLV+SIA++Y N G + DL+Q G +GL+RG+EKFD S
Sbjct: 49 KEEEKIVAKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPS 108
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H++E L R + L K G P+
Sbjct: 109 RGYKFSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQE 168
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETH 412
IAE +++S K+R +A K S SLN + E H
Sbjct: 169 IAENMDISVDKLRFLQQAAFKTKS------RSLNIVIDENH 203
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQLAASLRISRPE 254
+++ + LLT E + L + ++ G L + LK R G E PS+E A+S+ +S +
Sbjct: 18 HLRAIGRVPLLTADEEISLGRAVQNGRLLLEAAEELKLRAGGEAPSLEAWASSVNLSPRQ 77
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
LQ L A E++V +N+RLV+S+A+R + D+ DL+Q G +GL+R +++FD S+G
Sbjct: 78 LQRQLRLAERASEQMVTANLRLVVSLARRISHRRLDLDDLIQEGTLGLIRAVQRFDPSRG 137
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY WWIR+G+ RAL + SRT+RLP H+ +RL +R ++ L + G P+++ +A
Sbjct: 138 YKFSTYATWWIREGMGRALQQQSRTIRLPAHMQDRLQRLRRCQMELRQMLGREPNLEELA 197
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
E + +R A + SLD
Sbjct: 198 EATELKPLDIREALFRAQEPLSLD 221
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 123/213 (57%), Gaps = 1/213 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ + L + K L E L EP+M++ A
Sbjct: 38 PTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWA 97
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+ + L+ I+ + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 98 DHVDLEESALKKIINQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERG 157
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD ++G+K STY YWWIRQ ++RA+ + +R +RLP H+ E+L I+ + L ++ G
Sbjct: 158 VEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQRLG 217
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ I + L + ++R + SLD
Sbjct: 218 RNATPTEIGQELELEPAQIREYLSIARQPVSLD 250
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ++L EP + A +
Sbjct: 62 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVN 121
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 122 MPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 181
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 182 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPT 241
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA+ + M+ +K+R
Sbjct: 242 EEEIADRMEMTIEKLR 257
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 82 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 142 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 201
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 202 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 261
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 262 EEEIAESMEMTIEKLR 277
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 82 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 142 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 201
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 202 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 261
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 262 EEEIAESMEMTIEKLR 277
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ + L D K L E+L EP+ ++ ++
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L I+ + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 ATLNKIVSQGTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY YWWIRQ ++RA+ + +R +RLP H+ E+L I+ + L +K G +
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQKFGRNATPAE 199
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
I + L++ ++R + SLD
Sbjct: 200 IGQELDLEPAQIREYLSIARQPVSLD 225
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 139 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVE 198
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 199 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 258
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 259 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 318
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 319 EEEIAESMEMTIEKLR 334
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 5/200 (2%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME----QLA 245
++ ++ Y++ + LL E + L++KI L L+ + L +G + E A
Sbjct: 97 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWA 156
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+ + P + L E A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 157 VKVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 216
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKG 364
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G
Sbjct: 217 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 276
Query: 365 VTPSVDRIAEYLNMSQKKVR 384
P+ + IA + M+ +K+R
Sbjct: 277 RKPTEEEIATRMEMTIEKLR 296
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 114/185 (61%), Gaps = 1/185 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L++K+K +++ + L G P+ E+LAA++ +S E
Sbjct: 68 AFFKEMARYPLLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKE 127
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L + LA+ +++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG
Sbjct: 128 LERKLHQGRLAKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKG 187
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ + L +E P+ + +A
Sbjct: 188 YKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRDLKQELQRNPTEEELA 247
Query: 374 EYLNM 378
L++
Sbjct: 248 AGLDI 252
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 123/192 (64%), Gaps = 1/192 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ + L+ K +L+ + GCEP++ + A ++ +S
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSS 294
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q G +GL++ +EKF
Sbjct: 295 PVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 371
G + +TY YWWIRQ + +++ +NSRT+RLP +++ LG + A K +++ PS ++
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYRPSKEQ 414
Query: 372 IAEYLNMSQKKV 383
+A ++ +S +K+
Sbjct: 415 LASHVGVSTEKL 426
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++L K L + L EP+ E+ A+ + S
Sbjct: 26 VRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSE 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + + + A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 86 AELKKAIDQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPT 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE---KGVTPSV 369
+G+K STY YWWIRQ ++RA+ + +R +RLP H+ E+L I+ + L + + TP+
Sbjct: 146 RGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQTLGRNATPT- 204
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L++ ++R + SLD
Sbjct: 205 -EIAKELDLEPAQIREYLSIARQPISLD 231
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 113/186 (60%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L LG S Q+A L ++ +
Sbjct: 69 AFFKEMARYPLLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 188
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K PS +A
Sbjct: 189 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLSRNPSEAEMA 248
Query: 374 EYLNMS 379
E L ++
Sbjct: 249 EALEIT 254
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 83 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 142
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 143 MPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 202
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 203 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 262
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 263 EEEIAESMEMTIEKLR 278
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y++ + ++LT E V LS++I L + ++ L L P+ ++LA L +
Sbjct: 326 LRWYLRMIGRVDMLTPEEEVSLSRQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDP 385
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ L E A++++V +N+RLV+SIA+RY G + DL+Q G +GL+R EKFD
Sbjct: 386 ERFRRNLAEARRAKDRMVAANLRLVVSIAKRYMRKGLPLEDLIQEGSLGLIRAAEKFDDR 445
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDR 371
+G + STY WW++Q V RAL + R +RLP H+H+R+ +R A L E+G P+
Sbjct: 446 RGCRFSTYATWWVKQSVMRALADQGRIVRLPVHMHDRILAVRKAARDLSIERGCEPTEAD 505
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
I E L +S+K++R + SL+
Sbjct: 506 ICERLGISRKRLRELRSLAVQTISLE 531
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 82 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 142 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 201
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G PS
Sbjct: 202 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPS 261
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 262 EEEIAESMEMTIEKLR 277
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 145 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVE 204
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 205 MPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 264
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 265 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 324
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 325 EEEIAESMEMTIEKLR 340
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 120/193 (62%), Gaps = 2/193 (1%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + + + K + LL E V L+ +K + ++ + +LKE+L +P+ E+ +L
Sbjct: 53 IDDNIGAFFKEMARYPLLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKAL 112
Query: 249 RI-SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
++ S +L++ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R E
Sbjct: 113 QLESIRQLENRLYRGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATE 172
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD +KG+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L+++
Sbjct: 173 KFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQQLQRN 232
Query: 367 PSVDRIAEYLNMS 379
P+ +A LN+S
Sbjct: 233 PNEQELANELNVS 245
>gi|302560773|ref|ZP_07313115.1| RNA polymerase sigma (70) factor RpoD [Streptomyces griseoflavus
Tu4000]
gi|302478391|gb|EFL41484.1| RNA polymerase sigma (70) factor RpoD [Streptomyces griseoflavus
Tu4000]
Length = 404
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 141/250 (56%), Gaps = 25/250 (10%)
Query: 172 LQQNGSKQLRSMISPEL---IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHK 228
L+ GS + S I PE + + Y++ + LLT AE V L+++++ GL + K
Sbjct: 84 LETAGSAEPASRIRPETGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEK 142
Query: 229 LRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 288
LRL L +++ L +++ +A+ +L+ +N+RLV+S+A+RY G
Sbjct: 143 LRLTPDLDSGLALD------------LDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 190
Query: 289 ADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE 348
M DLVQ G +GL+R +EKFD ++G+K STY WWIRQ +SRAL + +RT+R+P H+ E
Sbjct: 191 LTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVE 250
Query: 349 RLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGL 407
+ ++R + L+E+G P+ +A +L++ ++V G+V L +E SL+
Sbjct: 251 LINRVVRVQRRMLQERGYEPTPGEVAAHLDLPPERV-------GEVLRLAQEPV-SLHAP 302
Query: 408 PGETHHIHCG 417
GE + G
Sbjct: 303 VGEEDDVALG 312
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 118/192 (61%), Gaps = 1/192 (0%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L ++ + + K + LL E V L+ +++ L +++ + RL+ +L +PS ++A S
Sbjct: 58 LSEDTVGAFFKEMARYPLLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAES 117
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
L ++ +L L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R E
Sbjct: 118 LGMNEKQLDHRLYQSRVAKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGALGLNRAAE 177
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVT 366
KFD KG+K STY YWWIRQ ++R + +SRT+RLP H+ E+L ++ A+ L +E
Sbjct: 178 KFDPDKGYKFSTYAYWWIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRNLKQELHRN 237
Query: 367 PSVDRIAEYLNM 378
P+ +AE L +
Sbjct: 238 PTEVELAEALEI 249
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 114/186 (61%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+ +++ + D + L+E+ G + ++A ++ +
Sbjct: 88 AFFKEMARYPLLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQ 147
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 148 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 207
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K P+ +A
Sbjct: 208 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEAEMA 267
Query: 374 EYLNMS 379
E+L M+
Sbjct: 268 EFLEMT 273
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 118/197 (59%), Gaps = 24/197 (12%)
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL------------------- 264
+D H RL +LG PS+E+ AA+++++ EL+ L E
Sbjct: 106 VDTHD-RLVSQLGLRPSLERWAAAVKMNVFELKQALTEGKRHWAEIAGMDVQELDRIQKA 164
Query: 265 ---AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
A+E ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY
Sbjct: 165 GIRAKEHMIEANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYA 224
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQ 380
YWWIRQG++RA+ SR +RLP H+ E+L I+ + ++ +EKG + + IA+ L M+
Sbjct: 225 YWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKVQRQITQEKGRPATAEEIAKQLEMTS 284
Query: 381 KKVRNATEAIGKVFSLD 397
+VR+ + + SL+
Sbjct: 285 GQVRDMLMRVPRSVSLE 301
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 23/203 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM--------ECSL----- 264
+K + L + + RL +LG PS E A + S EL+ L C L
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 265 ---------AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
A++ ++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ + KG T +++ IA+
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEEIAQ 269
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L M+ +VR + K SL+
Sbjct: 270 ELEMTPDQVREVLLRVPKSISLE 292
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 108/169 (63%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++++K + +D L+E+L +P+ ++AA++ ++ +
Sbjct: 65 AFFKEMARYPLLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQ 124
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 125 LEGNLYRGRVAKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKG 184
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K
Sbjct: 185 YKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQK 233
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 113/185 (61%), Gaps = 1/185 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + +E+LG P +A + I + +
Sbjct: 70 AFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQ 129
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 130 LEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 189
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K P+ + +A
Sbjct: 190 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEEELA 249
Query: 374 EYLNM 378
E L++
Sbjct: 250 EVLDI 254
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 23/203 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM--------ECSL----- 264
+K + L + + RL +LG PS E A + S EL+ L C L
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 265 ---------AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
A++ ++ +N+RLV+S+A++Y N G ++ DLVQ G +GL R +EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ + KG T +++ IA+
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLTRIKKAQRKIAQTKGRTANLEEIAQ 269
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L M+ +VR + K SL+
Sbjct: 270 ELEMTPDQVREVLLRVPKSISLE 292
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 135/235 (57%), Gaps = 36/235 (15%)
Query: 188 LIQNRLKGYV--KGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
L+Q R + V +G+ S+ H +V RL +L++ +LR +LG +PS Q A
Sbjct: 41 LVQKREQLVVERRGLCSK----HPDVARLE-------ALEEQRLRETSKLGHQPSQSQWA 89
Query: 246 AS----------------------LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 283
+ L +S +LQ L+ A+E+++ +N+RLV+++A++
Sbjct: 90 QACGLSAGELRAQVQAGNKAWAELLDMSPGDLQRQLLHGRRAKERMIQANLRLVVAVAKK 149
Query: 284 YDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343
Y + G ++ DLVQ G +GL RG+EK+D ++GF+ STY YWWIRQG++RA+ SRT+RLP
Sbjct: 150 YQHRGMELLDLVQEGTLGLERGVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLP 209
Query: 344 NHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
H+ E+L I+ A+ + + G T ++ +++ L +S++ VR + + SLD
Sbjct: 210 VHITEKLNRIKKAQRDIASRLGRTATLKDLSQELQLSEEVVRQTLMRVPRSVSLD 264
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L+++L P + A ++
Sbjct: 71 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVN 130
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 131 MTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 190
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 191 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 250
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 251 EEEIATRMEMTIEKLR 266
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 118/193 (61%), Gaps = 1/193 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + K+++ + L + K L + + + ++ AA + ++
Sbjct: 27 VRAYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTE 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
PEL IL A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 87 PELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 146
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ +++RT+RLP H+ E+L I+ + L ++ G +PS
Sbjct: 147 RGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGE 206
Query: 372 IAEYLNMSQKKVR 384
IA L + ++R
Sbjct: 207 IATALELHPSQIR 219
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 121/203 (59%), Gaps = 23/203 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL------------- 264
+ T ++L + + +L +LG PS+E+ A + +S E++ IL E
Sbjct: 110 LNTFVNLVEKRDQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQEL 169
Query: 265 ---------AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
A+ ++ +N+RLV+S+A+RY N G ++ DL+Q G +GL R +EKFD +KG+
Sbjct: 170 EQIQKAGIEAKNHMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 229
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAE 374
+ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ + KG TP+++ +A
Sbjct: 230 RFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKMAQIKGRTPTMEELAV 289
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++M+ ++R + + SL+
Sbjct: 290 EVDMTAPQIREVLMRVPRSVSLE 312
>gi|408677973|ref|YP_006877800.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
gi|328882302|emb|CCA55541.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
Length = 336
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + E+L P ++ AS
Sbjct: 40 FRQYLREIGRIPLLTAEEEVDLARRVEAGLFAE-------EKLANTPDLDSRLAS----- 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ KL+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 88 -DLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 146
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + +IR + L+E+G P+ +
Sbjct: 147 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVIRVQRRMLQERGYEPTAEE 206
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A L++ A E +G+V L +E SL+ GE + G
Sbjct: 207 VAAQLDL-------APERVGEVLRLAQEPV-SLHAPVGEEEDVALG 244
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 121/200 (60%), Gaps = 6/200 (3%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL-----A 245
+ ++ Y++ + LL E + L++KI L L+ + + +R+G E++ A
Sbjct: 88 DSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLWA 147
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++S PE + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 148 EEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 207
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN-AKLRLEEKG 364
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ KL +E G
Sbjct: 208 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQELG 267
Query: 365 VTPSVDRIAEYLNMSQKKVR 384
P+ + IA + ++ +K+R
Sbjct: 268 RKPTEEEIATRMEITIEKLR 287
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 137/243 (56%), Gaps = 5/243 (2%)
Query: 160 SKKKILSQNKSILQQNGSKQLRS----MISPELIQNRLKGYVKGVVSEELLTHAEVVRLS 215
S+KK + + GS RS + P + + ++ Y+ + LLT E +
Sbjct: 2 SRKKSIQAKAGVRSATGSATERSADKGVARPGVSADMVRTYLHEIGKIPLLTSEEEIIFG 61
Query: 216 KKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVR 275
K+++ + L + L E+L +P+ + A ++ EL+ I+ + + ++ K++ +N+R
Sbjct: 62 KRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLR 121
Query: 276 LVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE 335
LV+S+A++Y ++ DLVQ G +GL R ++KFD +KGFK STY YWWIRQ ++RA+ +
Sbjct: 122 LVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQ 181
Query: 336 NSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394
+RT+RLP H+ E+L I+ A+ +L + G + IA+ L + ++VR +
Sbjct: 182 QARTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQVREFLSMARQPV 241
Query: 395 SLD 397
SLD
Sbjct: 242 SLD 244
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L+L+ + L E+L PS + AA++
Sbjct: 88 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
E + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 207
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 208 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 267
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 268 EEEIATRMEMTIEKLR 283
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 124/211 (58%), Gaps = 2/211 (0%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+++ + + K + LL E V L+ ++K + + + L E+L PS E+ A ++
Sbjct: 60 LEDNVGAFFKEMARYPLLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAI 119
Query: 249 RISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+S EL+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R E
Sbjct: 120 GLSSTRELEKFLYRGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATE 179
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD +KG+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K
Sbjct: 180 KFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQKLQRN 239
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
PS +A+ L + ++R E + SL+
Sbjct: 240 PSEQELADELKIPPAQLRQLLELRRQSLSLN 270
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 24/192 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISR-PELQSILMECSL----------------------AR 266
RL +LG +PS+E+ A + + PEL+ I+ E A+
Sbjct: 124 RLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVETIERIQAEGVEAK 183
Query: 267 EKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 326
+ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD ++G++ STY YWWIR
Sbjct: 184 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWIR 243
Query: 327 QGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
QG++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG T +++ IA L+M+ +VR
Sbjct: 244 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAVELDMTAPQVRE 303
Query: 386 ATEAIGKVFSLD 397
+ + SL+
Sbjct: 304 VLLRVPRSVSLE 315
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 123/211 (58%), Gaps = 1/211 (0%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y++ + LL + + K+++ + L + K L + LG EPS+ + A
Sbjct: 15 LTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIY 74
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+ S +L+ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+E
Sbjct: 75 VNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVE 134
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD + G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +
Sbjct: 135 KFDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRS 194
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
PS IA+ L + ++R + SLD
Sbjct: 195 PSPTEIAKELELEPAQIREYLNIARQPISLD 225
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + ++++ +++ + + +L ++L EP+ +LA L ++
Sbjct: 9 IRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLNTTQ 68
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ IL A++K++ +N+RLV+SIA++Y + DLVQ G IGL RGIEKFD +
Sbjct: 69 AQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKFDPN 128
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDR 371
+G+K+STY YWW+ Q ++RA+ E SRT+RLP H++E+L I+ + + G PSV
Sbjct: 129 RGYKLSTYAYWWVTQAITRAIAEKSRTVRLPIHVNEKLNQIKKVQREFFQTLGRRPSVAE 188
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ L + ++R + SLD
Sbjct: 189 IAQKLELEPSQIREYLKVASGTISLD 214
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ L +RL EP +++ A +
Sbjct: 60 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVD 119
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 120 MPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 179
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 180 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 239
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 240 EEEIATRMEMTIEKLR 255
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 9/194 (4%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + + ELL E + L+++I+ + + + L+ L P+ ++ AAS+ PE+
Sbjct: 153 YMKTMGNHELLQKNEEIILAREIQILIGWEGKRDELEAELVRPPTYQEWAASID---PEM 209
Query: 256 QSILMECSL-----AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
I ++ + A+ L SN+RLV+SIA+RY N G +M DL Q G +GL R EKFD
Sbjct: 210 TVIQLKRQIRRSLRAKAALTESNLRLVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFD 269
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSV 369
KGF+ STY WWI+QG+ RA+ + +RT+RLP H+H++L L+R + L E G P+
Sbjct: 270 PEKGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLNLVRKTENDLASELGRDPTK 329
Query: 370 DRIAEYLNMSQKKV 383
+ IA + + K+
Sbjct: 330 EEIAAKVGIKPDKI 343
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L + L EP + A +++
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVK 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S + + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 136 MSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 195
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 196 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 255
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 256 EEEIATRMEMTIEKLR 271
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 121/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 168 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVE 227
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 228 MPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 287
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 288 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 347
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 348 EEEIAESMEMTIEKLR 363
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L+L+ + L E+L PS + AA++
Sbjct: 88 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
E + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 207
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 208 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 267
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 268 EEEIATRMEMTIEKLR 283
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L+L+ + L E+L PS + AA++
Sbjct: 73 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 132
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
E + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 133 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 192
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 193 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 252
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 253 EEEIATRMEMTIEKLR 268
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + +E G P + A +
Sbjct: 90 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVD 149
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 150 MPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 209
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 210 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 269
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 270 EEEIAESMEMTIEKLR 285
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 125/203 (61%), Gaps = 6/203 (2%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL AE + L+++I T LSL++ + + + + E +E S ++ +
Sbjct: 45 YLQEIGRVALLKPAEEIELARRIATWLSLEEKRSKFQA-VAAESWLE----SANLTPQQW 99
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+I+ E A+ LV +N+RLV+S+A++Y G + DL+Q G +GL+R EKFD ++GF
Sbjct: 100 STIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKFDYTRGF 159
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQG++RA+ +RT+RLP H+ E++ I+ A +L ++ G +PS D IA+
Sbjct: 160 KFSTYATWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGRSPSEDEIAQ 219
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ M ++R +AI SL+
Sbjct: 220 AVEMDADQLRFVRKAIQLPVSLE 242
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 24/192 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISR-PELQSILMECSL----------------------AR 266
RL +LG +PS+E+ A + + PEL+ I+ E A+
Sbjct: 124 RLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVEAIERVQAEGVEAK 183
Query: 267 EKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 326
+ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD ++G++ STY YWWIR
Sbjct: 184 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWIR 243
Query: 327 QGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
QG++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG T +++ IA L+M+ +VR
Sbjct: 244 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAVELDMTAPQVRE 303
Query: 386 ATEAIGKVFSLD 397
+ + SL+
Sbjct: 304 VLLRVPRSVSLE 315
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E L +P + A ++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVG 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 140 MPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 259
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 260 EEEIATRMEMTIEKLR 275
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 129 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVE 188
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 189 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 248
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 249 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 308
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 309 EEEIAESMEMTIEKLR 324
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++ + K L+++L EP+ E+ A ++ S
Sbjct: 27 IRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEAVGHSV 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L++++ +++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 87 GDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPM 146
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ + L + G +PS
Sbjct: 147 RGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRSPSPSE 206
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
I E L + ++R + SLD
Sbjct: 207 IGEALELEPAQIREYLLMARQPVSLD 232
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L ++L EP ++ A +
Sbjct: 67 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVD 126
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 127 MPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 186
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 187 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 246
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 247 EEEIATRMEMTIEKLR 262
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 123/210 (58%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y K V S L E + L+ +I L+L+ +L+E+L P+ + A
Sbjct: 184 FTEDSIQLYYKQVNSFARLHPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATE 243
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
++S+ EL L + A+ ++V +N+RLV S+A+RY N G D DL+Q G+IGLLR E
Sbjct: 244 AKMSKWELCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATE 303
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTP 367
KFD +KG+K STY WWIRQ ++RA+ + SR +RLP +L+E + I+ ++ +
Sbjct: 304 KFDHTKGYKFSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIECSPL 363
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + +A + M+ +K++ E + SLD
Sbjct: 364 TAEEVATRMEMTTEKLQFIIECAQETLSLD 393
>gi|311742667|ref|ZP_07716476.1| DNA-directed RNA polymerase sigma subunit RpoD [Aeromicrobium
marinum DSM 15272]
gi|311314295|gb|EFQ84203.1| DNA-directed RNA polymerase sigma subunit RpoD [Aeromicrobium
marinum DSM 15272]
Length = 464
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 20/197 (10%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LLT E V L+K+I+ GL + E+LA RI
Sbjct: 166 DPVKDYLKQIGKVSLLTAGEEVELAKRIEAGLFAE----------------EKLAKGGRI 209
Query: 251 S---RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
S R EL I+++ A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +E
Sbjct: 210 SPKMREELDWIVVDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVE 269
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G
Sbjct: 270 KFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGRE 329
Query: 367 PSVDRIAEYLNMSQKKV 383
P+ D +A+ L+M+ +KV
Sbjct: 330 PTPDELAKELDMTPEKV 346
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 118/193 (61%), Gaps = 1/193 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + K+++ + L + K L + + + ++ AA + ++
Sbjct: 27 VRTYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTE 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
PEL IL A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD
Sbjct: 87 PELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPM 146
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQ ++RA+ +++RT+RLP H+ E+L I+ + L ++ G +PS
Sbjct: 147 RGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGE 206
Query: 372 IAEYLNMSQKKVR 384
IA L + ++R
Sbjct: 207 IAAALELHPSQIR 219
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 121/204 (59%), Gaps = 24/204 (11%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR-PELQSILMECSL------------ 264
I+ + L + + RL +LG PS+E+ AA ++ EL+ I+ E
Sbjct: 152 IRRYVELIEARDRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEA 211
Query: 265 ----------AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
A++ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD ++G
Sbjct: 212 LDQMITEGIQAKDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRG 271
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG T S++ IA
Sbjct: 272 YRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTASIEDIA 331
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
L M+ +VR + + SL+
Sbjct: 332 AELGMTAPQVREVLLRVPRSVSLE 355
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 121/200 (60%), Gaps = 6/200 (3%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL-----A 245
+ ++ Y++ + LL E + L++KI L L+ + + +R+G E++ A
Sbjct: 89 DSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWA 148
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++S PE + L A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 149 EEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 208
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKG 364
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ +L +E G
Sbjct: 209 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELG 268
Query: 365 VTPSVDRIAEYLNMSQKKVR 384
P+ + IA + ++ +K+R
Sbjct: 269 RRPTEEEIATRMEITIEKLR 288
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E P+ ++ A +
Sbjct: 64 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAG 123
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 124 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 183
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 184 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPT 243
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 244 EEEIAERMEMTIEKLR 259
>gi|218442621|ref|YP_002380941.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
gi|218174979|gb|ACK73711.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
Length = 308
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L Y+K ELL ++ + L +KI+ L ++ +++ G + S+ + ++
Sbjct: 11 LDSYLKNFTRYELLNSSQEIDLGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSDFQLEE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E + E A+ +LV N+RLV+++A++Y G DL+Q G IGL+R E F+ S
Sbjct: 71 AEFYLVYEEGQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELFEPS 130
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY YWWIRQ + RA+ ++RT+RLP H+ RL I+ + +L + G TP+V
Sbjct: 131 KGYKFSTYAYWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPTVQE 190
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSL 396
IA L MS +++ E K SL
Sbjct: 191 IATSLQMSAQEIEKYREVAQKTISL 215
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ A +
Sbjct: 159 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWATLVE 218
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 219 MPLVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 278
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ L +E G P+
Sbjct: 279 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPT 338
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 339 EEEIAESMEMTIEKLR 354
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E P+ ++ A +
Sbjct: 80 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAG 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 140 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPT 259
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 260 EEEIAERMEMTIEKLR 275
>gi|294629207|ref|ZP_06707767.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
gi|292832540|gb|EFF90889.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
Length = 386
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 130/226 (57%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL +E+L P ++ A
Sbjct: 90 FRQYLREIGRIPLLTAAEEVELARRVEAGLFA-------EEKLSSTPDLDSRLAG----- 137
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 138 -DLDRLVVSGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 196
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+
Sbjct: 197 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPAE 256
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A L+++ +V G+V L +E SL+ GE + G
Sbjct: 257 VAAQLDLTPDRV-------GEVLRLAQEPV-SLHAPVGEEDDVALG 294
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + +LL E V LS+++ + L+ + +E+ G P+ + A
Sbjct: 408 IRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGE 467
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
L+ + + A+E++V +N+RLV+SIA+RY N G + DL+Q G IGL+RG+EKFD
Sbjct: 468 DVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFD 527
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
+ +GF+ STY WWIRQ ++RA+ ++SR++RLP H+H+ + +IR L + G P
Sbjct: 528 AGRGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISMIRKHTKALHTQLGRPPRE 587
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
D I E + + K R E + SL+
Sbjct: 588 DEICESVGIDIAKYRLIMECSQNIVSLE 615
>gi|383647771|ref|ZP_09958177.1| RNA polymerase sigma factor [Streptomyces chartreusis NRRL 12338]
Length = 430
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL L QLA
Sbjct: 134 FRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKLRLAPDLDS-----QLAL------ 181
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 182 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 240
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 241 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEE 300
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 301 VAAHLDLPPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 338
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 1/211 (0%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + + + K + LL E + L++++K ++ ++ E L P+ ++A +
Sbjct: 76 LADDAVGAFFKEMARYPLLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANA 135
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
L S + Q L A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R E
Sbjct: 136 LHCSEADFQHRLQYARSAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAE 195
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD KG+K STY YWWIRQG++R + ++RT+RLP H+ E+L ++ + L ++ T
Sbjct: 196 KFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRT 255
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
P+ +A L+++ +++R+ + K SL+
Sbjct: 256 PTEAELAAELDLTPEQLRSLQQVRRKSLSLN 286
>gi|455652448|gb|EMF31078.1| RNA polymerase sigma factor [Streptomyces gancidicus BKS 13-15]
Length = 428
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL P ++ A
Sbjct: 132 FRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKLRLT------PDLDSRLAH----- 179
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 180 -DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 238
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+
Sbjct: 239 RGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPQE 298
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L + ++V G+V L +E SL+ GE + G
Sbjct: 299 VAAHLELPPERV-------GEVLRLAQEPV-SLHAPVGEEDDVALG 336
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 123/211 (58%), Gaps = 1/211 (0%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y++ + LL + + K+++ + L + K L + LG EPS+ + A
Sbjct: 15 LTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIY 74
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+ S +L+ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG+E
Sbjct: 75 VNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVE 134
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD + G+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + L +K G +
Sbjct: 135 KFDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRS 194
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
PS IA+ L + ++R + SLD
Sbjct: 195 PSPTEIAKELELEPAQIREYLNIARQPISLD 225
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
+ ++ ++ Y++ + LL E + L++KI L L+ + +L L EP + AA
Sbjct: 66 QFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWAA 125
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 126 VASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 185
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGV 365
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G
Sbjct: 186 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 245
Query: 366 TPSVDRIAEYLNMSQKKVR 384
P+ + IA + M+ +K+R
Sbjct: 246 KPTEEEIATRMEMTIEKLR 264
>gi|443289588|ref|ZP_21028682.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
gi|385887203|emb|CCH16756.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
Length = 338
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 122/202 (60%), Gaps = 20/202 (9%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSME 242
IS +L+ + Y+ G+ +LLT A+ V L+++I+ GL D E+L C P E
Sbjct: 36 ISTDLV----RAYLNGIGRTKLLTAAQEVDLARRIEAGLFAD-------EKLATCTPVSE 84
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+L R +L+ I+ E A++ L+ +N+RLV+SIA+RY G DL+Q G +GL
Sbjct: 85 EL-------RADLELIVAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGL 137
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
+R +EKFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E++ + A+ L
Sbjct: 138 IRAVEKFDYAKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELAV 197
Query: 363 K-GVTPSVDRIAEYLNMSQKKV 383
G P+V +A L++ + +V
Sbjct: 198 TLGREPTVAEVARALDIPEFQV 219
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 119/191 (62%), Gaps = 6/191 (3%)
Query: 208 HAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLARE 267
H+E V++ K I L+L K+ E + E E A ++ EL++IL A++
Sbjct: 108 HSEAVKIGK-IAQQLNLTPKKV---ESIITE-GKETWANLAQVKLSELETILANGIKAKQ 162
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
K++ +N+RLV+SIA++Y N G ++ DL+Q G +GL + +EKFD +KG+ STY YWWIRQ
Sbjct: 163 KMINANLRLVVSIAKKYQNRGLELLDLIQEGTLGLEKAVEKFDHTKGYHFSTYAYWWIRQ 222
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ +RT+RLP H+ ERL ++ + +L +K G +VD IA+ ++M+ +R
Sbjct: 223 GMTRAIATQARTIRLPIHITERLNQLKKVQRQLSQKLGRIATVDEIAKEMDMTSLDLRQF 282
Query: 387 TEAIGKVFSLD 397
I + SL+
Sbjct: 283 LNQIPRSISLE 293
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 109/169 (64%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + +++ + L+++L +P+ E+L A L IS +
Sbjct: 92 AFFKEMARYPLLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQ 151
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 152 LEHQLYLGRVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKG 211
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ + L++K
Sbjct: 212 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKYQRELKQK 260
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 121/194 (62%), Gaps = 14/194 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT AE V L+K+I+ GL E+LG +L +LR+
Sbjct: 97 VRMYLKEIGKVPLLTAAEEVDLAKRIEAGLFA-------AEKLG---GGRRLTVALRV-- 144
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+++ + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +
Sbjct: 145 -DLEAVARDGDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYT 203
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P +
Sbjct: 204 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEE 263
Query: 372 IAEYLNMSQKKVRN 385
IA+ ++++ KVR
Sbjct: 264 IAKEMDLTPDKVRE 277
>gi|291439801|ref|ZP_06579191.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
gi|291342696|gb|EFE69652.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
Length = 390
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL P ++ A
Sbjct: 94 FRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKLRLT------PDLDSRLAH----- 141
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 142 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 200
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 201 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEE 260
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V G+V L +E SL+ GE + G
Sbjct: 261 VAAHLDLPPERV-------GEVLRLAQEPV-SLHAPVGEEDDVALG 298
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 125/249 (50%), Gaps = 36/249 (14%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
YV+ + + LT EV LS + +L + L +LG EP+ + + ++ +S E
Sbjct: 73 AYVREICRLDRLTDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNM-------------GADM---------- 291
+++ + AR +LV SN+RLV++IA RY + G DM
Sbjct: 133 VRNEIERGRRARARLVASNLRLVLAIANRYKSRAVVRSAWKSRSKGGMDMPSHEKVRLQR 192
Query: 292 ------ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345
DL+Q G +GL+R EKFD SKGFK STY WWIRQ + R + E+SRT+RLPNH
Sbjct: 193 QHNIFLGDLIQEGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLPNH 252
Query: 346 LHERLGLIRNAKLRLEEKGVTPSVD-RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSL 404
+ E L I + RL+ P D +AE NM+ K+++ T+ K +L SL
Sbjct: 253 VTESLRQIYRMRARLQHVLKRPPTDEEVAEACNMTLKRLKKITQHAWKTQTL------SL 306
Query: 405 NGLPGETHH 413
G P H
Sbjct: 307 EGPPNNEAH 315
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ RL ++L +P + A +++
Sbjct: 78 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQ 137
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 138 LPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 197
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 198 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 257
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 258 EEEIATRMEMTIEKLR 273
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 124/249 (49%), Gaps = 36/249 (14%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
YV+ + + LT EV LS + +L + L +LG EP+ + + ++ +S E
Sbjct: 73 AYVREICRLDRLTDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRY-------------DNMGADM---------- 291
++ + ARE+LV SN+RLV++IA RY G DM
Sbjct: 133 VRKRIERGRRARERLVASNLRLVLAIANRYKLRAVVCSAWKSRSKGGMDMPSHEKVRLQR 192
Query: 292 ------ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345
DL+Q G +GL+R EKFD SKGFK STY WWIRQ + R + E+SRT+RLPNH
Sbjct: 193 QHNIFLGDLIQEGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLPNH 252
Query: 346 LHERLGLIRNAKLRLEEKGVTPSVD-RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSL 404
+ E L I + RL+ P D +AE NM+ K+++ T+ + +L SL
Sbjct: 253 VTESLRQIYRMRARLQHVLKRPPTDEEVAEACNMTLKRLKKITQHAWETQTL------SL 306
Query: 405 NGLPGETHH 413
G P H
Sbjct: 307 EGPPNSEAH 315
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 119/192 (61%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRITLLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 173
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+GV P+ +
Sbjct: 174 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEE 233
Query: 372 IAEYLNMSQKKV 383
IA L+++ ++V
Sbjct: 234 IAVELDLTPERV 245
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 29/230 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL + E+LA + + +
Sbjct: 95 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTS 138
Query: 253 P----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EK
Sbjct: 139 PQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 199 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 258
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
S + IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 259 SPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 300
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPEL----------------------QSILMECSLARE 267
+L RL PS+E+ A + +IS EL + I+ + A+E
Sbjct: 139 QLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGLEVGELEEIIALGTRAKE 198
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 199 QMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 258
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SR +RLP H+ E+L I+ A+ ++ + +G T +V+ IA+ L ++ + VR
Sbjct: 259 GMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQMRGRTATVEEIAQELALTPEAVREV 318
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 319 LMTVPRSVSLE 329
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 4/223 (1%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
SKQL + S L + ++ Y+K + S LL + V L+K+I+ + L+ + L E G
Sbjct: 2 SKQL-TRTSKRLATDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETG 60
Query: 237 --CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294
E + Q A++ ++ L L + A+ +++ +N+RLV+SIA++Y N DL
Sbjct: 61 PGAEVTDYQWASAAGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDL 120
Query: 295 VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIR 354
+Q G +GL+RG EKFD +G+K STY +WWIRQ V+R++ + SRT+RLP HL E + I
Sbjct: 121 IQEGCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRIS 180
Query: 355 NAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396
+ + G P+ + IA ++MS +K+ +A SL
Sbjct: 181 KMEQKFALHNGRNPTTEEIAAEMDMSAEKITQIKKAAQAPVSL 223
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 130/226 (57%), Gaps = 21/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL D KL + + P M R
Sbjct: 112 VRMYLKEIGKVPLLTAEEQVDLAKRIEAGLFASD-KLAVATK-KTSPQM----------R 159
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +
Sbjct: 160 RDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYT 219
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS +
Sbjct: 220 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEE 279
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 280 IAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 317
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 29/230 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL + E+LA + + +
Sbjct: 112 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTS 155
Query: 253 P----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EK
Sbjct: 156 PQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 215
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 216 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 275
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
S + IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 276 SPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 317
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 29/230 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL + E+LA + + +
Sbjct: 95 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTS 138
Query: 253 P----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EK
Sbjct: 139 PQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 199 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 258
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
S + IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 259 SPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 300
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 134/227 (59%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ +LA
Sbjct: 134 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL----- 181
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 182 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 239
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 240 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 299
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 300 EVAAHLDLPPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 338
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAA--SLRIS--RP------------------ELQSILMECSLARE 267
RL +LG PS+E+ AA + +S +P EL + E A++
Sbjct: 108 RLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKAKD 167
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD ++G++ STY YWWIRQ
Sbjct: 168 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIRQ 227
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +EKG ++D IA L M+ +VR
Sbjct: 228 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRIATIDDIAAELEMTPAQVREV 287
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 288 LLKVPRSVSLE 298
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 29/230 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL + E+LA + + +
Sbjct: 112 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTS 155
Query: 253 P----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EK
Sbjct: 156 PQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 215
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 216 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 275
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
S + IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 276 SPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 317
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 130/226 (57%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + ERLG ++ A
Sbjct: 91 FRQYLREIGRIPLLTAVEEVELARRVEAGLFAE-------ERLGTASGLDTRLAL----- 138
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 139 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 197
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ D
Sbjct: 198 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPDE 257
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ A E + +V L +E SL+ GE + G
Sbjct: 258 VAAHLDL-------APERVSEVLRLAQEPV-SLHAPVGEEDDVALG 295
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
ELQ L E AR++++ +N+RLV+++A++Y G ++ DLVQ G +GL R +EKFD ++
Sbjct: 125 ELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTR 184
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + EKG SV +
Sbjct: 185 GFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEKGRLASVSDL 244
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L +S++ VR + + SL+
Sbjct: 245 AKELGVSEETVRQTLARVPRSVSLE 269
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILME---CSL-------------------ARE 267
RL +L PS+E+ AA+ ++ EL+ I+ E C A++
Sbjct: 113 RLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAKD 172
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD ++G++ STY YWWIRQ
Sbjct: 173 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIRQ 232
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +EK T ++D IA L M+ ++R
Sbjct: 233 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQIREV 292
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 293 LLRVPRSVSLE 303
>gi|440700623|ref|ZP_20882862.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
gi|440276773|gb|ELP64993.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
Length = 421
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL L QLA
Sbjct: 125 FRQYLREIGRIPLLTAAEEVDLARRVEAGL-FAEEKLRLASDLDS-----QLAL------ 172
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 173 -DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 231
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 232 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEE 291
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 292 VAAHLDLLPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 329
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 29/230 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E V L+K+I+ GL + E+LA + + +
Sbjct: 112 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTS 155
Query: 253 P----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EK
Sbjct: 156 PQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 215
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 216 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 275
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
S + IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 276 SPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 317
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +K
Sbjct: 185 ELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 244
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRI 372
G++ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ + +G T +V+ I
Sbjct: 245 GYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQIRGRTATVEEI 304
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L ++ + VR + + SL+
Sbjct: 305 AQELALTPEAVREVLMTVPRSVSLE 329
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 119/192 (61%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 99 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG----- 146
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 147 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 205
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+GV P+ +
Sbjct: 206 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAED 265
Query: 372 IAEYLNMSQKKV 383
IA L+++ ++V
Sbjct: 266 IAVELDLTPERV 277
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
AA L +S +LQ L+ AR++++ +N+RLV+++A++Y G ++ DLVQ G +GL R
Sbjct: 138 AACLDLSLSDLQQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLER 197
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEK 363
+EK+D ++GF+ STY YWWIRQGV+RA+ SRT+RLP H+ E+L I+ A+ + +
Sbjct: 198 AVEKYDPTRGFRFSTYAYWWIRQGVTRAIATQSRTIRLPVHVTEKLNRIKKAQRQFASDH 257
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
G T S+ +AE L S++ VR + + SL+
Sbjct: 258 GRTASLAELAEALQWSEEAVRLTLLRVPRSISLE 291
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 120/194 (61%), Gaps = 14/194 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 173
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+GV P+ +
Sbjct: 174 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAED 233
Query: 372 IAEYLNMSQKKVRN 385
IA L+++ ++V +
Sbjct: 234 IAVDLDLTPERVTD 247
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 120/194 (61%), Gaps = 1/194 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ ++K + S LL +V+ L+++I+ + +++L+++ G EP + A SL +S
Sbjct: 253 MGAFLKEIGSVPLLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSS 312
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL L+ ARE LV +N+RLV+S+A+++ N G M DL+Q G IGL++G E+FD
Sbjct: 313 EELTRNLLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYR 372
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+GF+ STY WWIRQ + RA+ + SR +R+P+ + + I A+L L G P+
Sbjct: 373 RGFRFSTYAMWWIRQAMQRAIADTSRPIRIPSTISDLSVQIYRARLELSSSLGRDPTDAE 432
Query: 372 IAEYLNMSQKKVRN 385
+A+ L++S +++++
Sbjct: 433 LADCLDISVQRLQD 446
>gi|302342714|ref|YP_003807243.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfarculus
baarsii DSM 2075]
gi|301639327|gb|ADK84649.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfarculus
baarsii DSM 2075]
Length = 590
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 143/262 (54%), Gaps = 45/262 (17%)
Query: 187 ELIQNRLK--GYVKGVVS----EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
E+I+ RL+ + +GV++ E L ++ +L+KK++ + D+ + C
Sbjct: 250 EIIRVRLRTIDHCEGVITSAMMETGLPKGDIGKLAKKVRANCACDEDMAK------CRCD 303
Query: 241 MEQLAA---SLRISRPELQSILMECSL---------------------AREKLVMSNVRL 276
++L A SLR++R ++ + MEC + A+++LV +N+RL
Sbjct: 304 GQRLLAVDESLRVARGRIREVEMECKMGAPSLRKILDRVGKGQTLAQDAKQELVEANLRL 363
Query: 277 VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336
V+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++RA+ +
Sbjct: 364 VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQ 423
Query: 337 SRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 395
+RT+R+P H+ E + LIR ++ ++E G P+ + IAE ++ +KVR KV
Sbjct: 424 ARTIRIPVHMIETINKLIRTSRYLVQEFGREPTPEEIAEKMDFPLEKVR-------KVLK 476
Query: 396 LDREAFPSLNGLPGETHHIHCG 417
+ +E SL GE H G
Sbjct: 477 IAKEPI-SLETPIGEEEDSHLG 497
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L+E P+ ++ A +
Sbjct: 68 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAG 127
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 128 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 187
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 188 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPT 247
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 248 EEEIATRMEMTIEKLR 263
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L ++ + +L +RL +P + A ++
Sbjct: 75 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVE 134
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 135 LPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 194
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 195 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 254
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 255 EEEIATRMEMTIEKLR 270
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 119/192 (61%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAV----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 173
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+GV P+ +
Sbjct: 174 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAED 233
Query: 372 IAEYLNMSQKKV 383
IA L+++ ++V
Sbjct: 234 IAVELDLTPERV 245
>gi|297199501|ref|ZP_06916898.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297147415|gb|EDY56986.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 428
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT E V L+++++ GL + E+L P ++ QLA
Sbjct: 132 FRQYLREIGRIPLLTAVEEVELARRVEAGLFAE-------EKLSSTPDLDSQLAL----- 179
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 180 --DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 237
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 238 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 297
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ A E + +V L +E SL+ GE + G
Sbjct: 298 EVAAHLDL-------APERVSEVLRLAQEPV-SLHAPVGEEDDVALG 336
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 123/193 (63%), Gaps = 16/193 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ +LA
Sbjct: 146 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL----- 193
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 194 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 251
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 252 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTHE 311
Query: 371 RIAEYLNMSQKKV 383
+A++L++ ++V
Sbjct: 312 EVADHLDLLPERV 324
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S EL+ + E A++ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKF
Sbjct: 153 LSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKF 212
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D ++G++ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ +EK T +
Sbjct: 213 DPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTAT 272
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+D IA L M+ ++R + + SL+
Sbjct: 273 IDDIATELKMTPDQIREVLLRVPRSVSLE 301
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 11/213 (5%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLAASL 248
+ ++ Y+K + S LL + V L+K+I+ + L+ + L E G E S Q AA+
Sbjct: 201 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAA 260
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
++ L+ L + A+ +++ +N+RLV+SIA++Y N DL+Q G +GL+RG EK
Sbjct: 261 GLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQEGCVGLIRGAEK 320
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK----- 363
FD +G+K STY +WWIRQ V+R++ + SRT+RLP HL E + I ++E+K
Sbjct: 321 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRIS----KMEQKFALYN 376
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396
G P+++ IA + MS +K+ +A SL
Sbjct: 377 GRPPTLEEIASEMEMSVEKITQIKKAAQAPVSL 409
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 108/168 (64%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ ++L + + L+E L E + E+ A + +++
Sbjct: 20 VRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ L A+ K++ +N+RLV++IA++Y + DL+Q G +GL RG+EKFD +
Sbjct: 80 KQLQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
KG+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + +L
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQL 187
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 1/194 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL E + L+K I+ + + +L LG P+ ++A + + +L L +C
Sbjct: 84 LLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRT 143
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ +++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG+K STY YWW
Sbjct: 144 AKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 203
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++R + RT+RLP H+ E++ +R L P+ IA+ L +S ++
Sbjct: 204 IRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLRRSLNRIPNDTEIAQELEISLPQL 263
Query: 384 RNATEAIGKVFSLD 397
RN + K SL+
Sbjct: 264 RNLQQIRRKTLSLN 277
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 119/192 (61%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 173
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+GV P+ +
Sbjct: 174 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAED 233
Query: 372 IAEYLNMSQKKV 383
IA L+++ ++V
Sbjct: 234 IAVELDLTPERV 245
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 17/234 (7%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE--RLG--CEPSMEQL 244
I + ++ Y+K + LLT E V L++K++ GL D+ L+E R G E M L
Sbjct: 301 IDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSEEDMMNL 360
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A ++I L++ A++KL +N+RLV+SIA+RY G DL+Q G +GL++
Sbjct: 361 EAQIKI----LKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 416
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ L+E
Sbjct: 417 AVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL 476
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
G PS + IA + + +VR ++ + +E SL GE H G
Sbjct: 477 GREPSPEEIAREMETTPDRVR-------EILKISQEPV-SLETPIGEEEDSHLG 522
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 120/204 (58%), Gaps = 1/204 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++ I+ +++ + + +E G P+ +LA +L ++ +
Sbjct: 57 AFFKEMARYPLLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQ 116
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 117 LEQRLHRSQVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 176
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVD-RIA 373
+K STY YWWIRQG++R + ++RT+RLP H+ E+L ++ A+ L P + +A
Sbjct: 177 YKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELA 236
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
L +++++++ + + SL+
Sbjct: 237 TVLEITEEQLQQLLQVRRQSLSLN 260
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L+ LG + Q+A L ++ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 200
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV-TPSVDRIA 373
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++K P+ +A
Sbjct: 201 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPNEAEMA 260
Query: 374 EYLNMS 379
E L +S
Sbjct: 261 EALEIS 266
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E ++L+ +K ++ +L L+E+LG P+ E+ A+ L + +
Sbjct: 56 AFFKEMARYPLLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVK 115
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 116 QLNSALYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 175
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 176 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAEL 235
Query: 373 AEYLNMS 379
A+ L+++
Sbjct: 236 AQELDIT 242
>gi|67920853|ref|ZP_00514372.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856970|gb|EAM52210.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 297
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 123/204 (60%), Gaps = 22/204 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ AE ++L+++I+ L L + EQL SR
Sbjct: 10 VRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLEK--------------EQL------SR 49
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E + I+ + ARE+++ +N+RLV+SIA++Y N G + DL+Q G +GL+RG+EKFD +
Sbjct: 50 EE-EKIVAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPA 108
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H++E L R + L K G P+
Sbjct: 109 RGYKFSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQRE 168
Query: 372 IAEYLNMSQKKVRNATEAIGKVFS 395
IAE + +S +++ +A K S
Sbjct: 169 IAENMEISVDRLQFLQQAAFKTKS 192
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILME---CSL-------------------ARE 267
RL +L PS+E+ AA+ ++ EL+ I+ E C A++
Sbjct: 89 RLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAKD 148
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD ++G++ STY YWWIRQ
Sbjct: 149 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIRQ 208
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SRT+RLP H+ E+L I+ A+ ++ +EK T ++D IA L M+ ++R
Sbjct: 209 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQIREV 268
Query: 387 TEAIGKVFSLD 397
+ + SL+
Sbjct: 269 LLRVPRSVSLE 279
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P+ + ++ Y+ + LLT + + K+++ + L + K L + L EP+ + A
Sbjct: 20 PDSSTDTVRTYLHEIGRVALLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWA 79
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
+++S EL+ ++ + A++K++ +N+RLV++IA++Y + DL+Q G +GL RG
Sbjct: 80 LQVQLSEAELKRLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERG 139
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EKFD +G+K STY YWWIRQ ++RA+ +++RT+RLP H+ E+L I+ + L ++ G
Sbjct: 140 VEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLG 199
Query: 365 VTPSVDRIAEYLNMSQKKVRN 385
+P+ I L + ++R
Sbjct: 200 RSPTPAEIGSALELHPSQIRE 220
>gi|302545597|ref|ZP_07297939.1| RNA polymerase sigma (70) factor RpoD [Streptomyces hygroscopicus
ATCC 53653]
gi|302463215|gb|EFL26308.1| RNA polymerase sigma (70) factor RpoD [Streptomyces himastatinicus
ATCC 53653]
Length = 443
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 134/227 (59%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LL+ AE V L+++++ GL +E+L P ++ QLA
Sbjct: 147 FRQYLREIGRIPLLSAAEEVELARRVEAGLFA-------EEKLASAPDLDSQLAL----- 194
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 195 --DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 252
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 253 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 312
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L+++ ++V +V L +E SL+ GE + G
Sbjct: 313 EVAIHLDLTPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 351
>gi|408825995|ref|ZP_11210885.1| RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738]
Length = 363
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 129/226 (57%), Gaps = 25/226 (11%)
Query: 175 NGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER 234
+G+ + +P+L + Y+ + LLT AE V L+++I+ GL + E+
Sbjct: 54 HGAADRTAAPTPDLFRQ----YLGEIGRIPLLTAAEEVELARRIEAGLFAE-------EK 102
Query: 235 LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294
L P ++ A +L ++++ A+ +L+ +N+RLV+SIA+RY G + DL
Sbjct: 103 LARTPDLDSRLAG------DLDTLVVRGRTAKRRLIEANLRLVVSIAKRYAGRGLTLPDL 156
Query: 295 VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LI 353
VQ G +GL+R +EKFD +GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++
Sbjct: 157 VQEGNLGLIRAVEKFDHERGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVV 216
Query: 354 RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDRE 399
R + L+E G P+ + +A +L + ++V G+V L +E
Sbjct: 217 RTQRRILQEHGREPTAEEVAAHLGLPPERV-------GEVLRLAQE 255
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 132/228 (57%), Gaps = 25/228 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM--EQLAASLRI 250
+ Y++ + LLT AE V L+++++ GL + E+L P + +LAA
Sbjct: 139 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAA---- 187
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 188 ---DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFD 244
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+
Sbjct: 245 YTRGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEQGSEPTP 304
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+ +A L++ ++V +V L +E SL+ GE + G
Sbjct: 305 EEVAAQLDLPPERV-------SEVLRLAQEPV-SLHAPVGEEEDVALG 344
>gi|75812393|ref|YP_320012.1| sigma-70 [Anabaena variabilis ATCC 29413]
gi|75705149|gb|ABA24823.1| Sigma-70 [Anabaena variabilis ATCC 29413]
Length = 314
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + +LT + + L++++K + HK L+E+L + +++QLAA + S E+
Sbjct: 11 YLREISKYPMLTPEQEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGKSETEV 70
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
IL A+EK++ +N+RLV++IA++Y + DLVQ G IGL + +E+FD ++G+
Sbjct: 71 FQILRLGQKAKEKMIAANLRLVVAIAKKYRWSQLEFLDLVQEGSIGLQKAVERFDPNRGY 130
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAE 374
K ST YWWIRQ +++A+ S T+R P+H+++RL ++ + L + G P++ IAE
Sbjct: 131 KFSTCAYWWIRQEITKAIANKSTTIRTPSHMNDRLIKLKKVQRELVKILGREPNIAEIAE 190
Query: 375 YLNMSQKKVRNATEAIGKVFSLDR 398
+ + +VR A SLDR
Sbjct: 191 FAELEPNQVRECLIAFRHPLSLDR 214
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + R+++ L E S + +
Sbjct: 69 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVD 128
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 129 MELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 188
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 189 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPT 248
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 249 EEEIAERMEMTIEKLR 264
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 119/201 (59%), Gaps = 6/201 (2%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y++ + LL E + L+++I L L+ + E LG P+ E+ A +
Sbjct: 77 FTEDSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIA 136
Query: 248 LRISRPELQSILMECSL---AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
I P ++ + A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 137 CDI--PNMRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 194
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK- 363
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ L +K
Sbjct: 195 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKM 254
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + IAE + M+ +K+R
Sbjct: 255 GRKPTEEEIAEDMEMTIEKLR 275
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L + + EP AA++
Sbjct: 65 EDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVD 124
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 125 MPLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 184
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 185 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPT 244
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 245 EEEIATRMEMTIEKLR 260
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 115/186 (61%), Gaps = 23/186 (12%)
Query: 235 LGCEPSMEQLAASLRISRPELQSILMECS----------------------LAREKLVMS 272
LG PS ++ A + +IS EL++IL + A+E+++ +
Sbjct: 126 LGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQLETIEKVGIRAKEQMIKA 185
Query: 273 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRA 332
N+RLV+S+A++Y + G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQG++RA
Sbjct: 186 NLRLVVSVAKKYQHRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRA 245
Query: 333 LVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391
+ SR +RLP H+ E+L I+ A+ +L +EKG +++ +++ L+MS +++R I
Sbjct: 246 ISTQSRIIRLPVHITEKLNKIKRAQRKLSQEKGRKATIEEMSKELDMSAEQIREVLLRIP 305
Query: 392 KVFSLD 397
+ SL+
Sbjct: 306 RSVSLE 311
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E V L+++++ L +++ K RLKE L PS + A +L + + + L +
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG+K STY YW
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
WIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K
Sbjct: 195 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQK 234
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
L L+ + L ER G EP+ Q AA+ +++ L+ L +L ++K++ SN+RLV+SI
Sbjct: 5 LKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIX 64
Query: 282 QRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 341
+ Y G ++ DLVQ G GL+RG EKFD+SKGFK STY +WWI+Q V + L + SRT+R
Sbjct: 65 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIR 124
Query: 342 LPNHLHERLGLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQKKV 383
LP H+ E ++ A+ + L E G P IAE +S K++
Sbjct: 125 LPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRL 167
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 106/169 (62%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+K+++ + +D+ + L +L + + AA+ ++ +
Sbjct: 75 AFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAAFGLTERQ 134
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 135 LEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGAMGLNRATEKFDPDKG 194
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ +++K
Sbjct: 195 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQREIKQK 243
>gi|416379954|ref|ZP_11684013.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357265758|gb|EHJ14479.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 297
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 124/204 (60%), Gaps = 22/204 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ AE ++L+++I+ L L + KE+L SR
Sbjct: 10 VRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLE-----KEQL---------------SR 49
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
E + I+ + ARE+++ +N+RLV+SIA++Y N G + DL+Q G +GL+RG+EKFD +
Sbjct: 50 EE-EKIVAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPA 108
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
+G+K STY YWWIRQG++RA+ E SRT+RLP H++E L R + L K G P+
Sbjct: 109 RGYKFSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLHKYRKSIRELTLKLGRKPTQRE 168
Query: 372 IAEYLNMSQKKVRNATEAIGKVFS 395
IAE + +S +++ +A K S
Sbjct: 169 IAENMEISVDRLQFLQQAAFKTKS 192
>gi|126660003|ref|ZP_01731125.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126618681|gb|EAZ89428.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 297
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+K++ +N+RLV+SIA++Y N G + DL+Q G +GL+RG+EKFD S+G+K STY YWW
Sbjct: 61 ARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWW 120
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++RA+ E SRT+RLP H++E L R + L K G P+ IAE ++++ K+
Sbjct: 121 IRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDITVDKL 180
Query: 384 RNATEAIGKVFS 395
R +A K S
Sbjct: 181 RFLQQAAFKTKS 192
>gi|153304|gb|AAA26762.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450077|prf||1920369A RNA polymerase:SUBUNIT=sigma
Length = 393
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 121/193 (62%), Gaps = 16/193 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG ++ QLA
Sbjct: 97 FRQYLREIGRIPLLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV----- 144
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 145 --DLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 202
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 203 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAE 262
Query: 371 RIAEYLNMSQKKV 383
+A +L ++ ++V
Sbjct: 263 EVAVHLELTPERV 275
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 25/228 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ--LAASLRI 250
+ Y++ + LLT AE V L++ ++ GL + E+L P + LAA
Sbjct: 112 FRQYLREIGRIPLLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAA---- 160
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 161 ---DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFD 217
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E G P+
Sbjct: 218 YARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEHGQEPTA 277
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
D +A L++ ++ IG+V L +E SL+ GE + G
Sbjct: 278 DEVAAQLDLPPER-------IGEVLRLAQEPV-SLHAPVGEEDDVALG 317
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ AE V L+++I+ +S +D + +L ++L PS+++ +L
Sbjct: 56 EDTVGAFFKEMARYPLLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALE 115
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
+ + + L + A+ +++ SN+RLV+SIA+RY N G DL+Q G IGL R EK
Sbjct: 116 FPQVRQFEIWLYQLRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEK 175
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
FD KG+K STY YWWIRQ ++R + ++RT+RLP H+ E+L I+ A+ L+++
Sbjct: 176 FDPDKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQE 230
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 6/201 (2%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y++ + LL E + L+++I L L+ + L E LG P+ E+ A +
Sbjct: 72 FTEDSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIA 131
Query: 248 LRISRPELQSILMECSL---AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
+ P ++ + A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 132 SDM--PNMRQFNRRLHIGRKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 189
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK- 363
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I+ L +K
Sbjct: 190 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKM 249
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + IAE + M+ +K+R
Sbjct: 250 GRKPTEEEIAEDMEMTIEKLR 270
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 132/228 (57%), Gaps = 25/228 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM--EQLAASLRI 250
+ Y++ + LLT AE V L+++++ GL + E+L P + +LAA
Sbjct: 88 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAA---- 136
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 137 ---DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFD 193
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+
Sbjct: 194 YTRGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEQGSEPTP 253
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+ +A L++ ++V +V L +E SL+ GE + G
Sbjct: 254 EEVAAQLDLPPERV-------SEVLRLAQEPV-SLHAPVGEEEDVALG 293
>gi|330466466|ref|YP_004404209.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
gi|328809437|gb|AEB43609.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
Length = 335
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 22/219 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ +LLT A+ V L+K+I+ GL + KL C P QL A L +
Sbjct: 39 VRAYLNGIGRTKLLTAAQEVELAKRIEAGL-FAEEKL-----TTCTPVSAQLQADLTL-- 90
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
I E A+ L+ +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +
Sbjct: 91 -----IAQEGQAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E++ + A+ L G PSV
Sbjct: 146 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELSVSLGREPSVAE 205
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
IA L++ + +V ++ S DRE SL+ GE
Sbjct: 206 IARALDVPEFQVI-------ELISYDREPV-SLDQTVGE 236
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + ++ G P ++ A +
Sbjct: 158 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVD 217
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 218 MPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 277
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E G P+
Sbjct: 278 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPT 337
Query: 369 VDRIAEYLNMSQKKVR 384
+ IAE + M+ +K+R
Sbjct: 338 EEEIAESMEMTIEKLR 353
>gi|411118238|ref|ZP_11390619.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoriales
cyanobacterium JSC-12]
gi|410711962|gb|EKQ69468.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoriales
cyanobacterium JSC-12]
Length = 341
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 4/186 (2%)
Query: 212 VRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271
++ +K + GL+ D L L+E + P + Q A + ++R E+ + LA+ KLV
Sbjct: 54 IKFTKAERLGLTDDSVGLFLRE-MARYPLLTQ-AQEVELAR-EIAKGGPQAELAKRKLVR 110
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 331
SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD +G+K STY YWWIRQG++R
Sbjct: 111 SNLRLVVSIAKKYLNRGVPFLDLIQEGAMGLMRAAEKFDYERGYKFSTYAYWWIRQGITR 170
Query: 332 ALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAI 390
A+ SRT+RLP H+ E+L +R A+ L +K G P+ IA L++ + K+ + +
Sbjct: 171 AIASQSRTVRLPVHMVEKLNQVRKARQMLSQKLGRKPTKQEIAAELDLDEDKLEHVLDVS 230
Query: 391 GKVFSL 396
SL
Sbjct: 231 QGTLSL 236
>gi|443323548|ref|ZP_21052553.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442786728|gb|ELR96456.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 381
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 116/199 (58%), Gaps = 26/199 (13%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------- 264
+++ DH L +LG PS++ A + + EL+ IL L
Sbjct: 83 ITVHDH---LAAQLGHRPSLKTWAKTGNLEITELKQILTTGKLCWAQIAKLELKELEMIQ 139
Query: 265 -----AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 319
A+ L+ +N+RLV+SIA++Y N G ++ DL+Q G +GL + ++KFD +KG++ ST
Sbjct: 140 KAGIEAKNTLLAANLRLVVSIAKKYQNRGLELLDLIQEGTLGLEKAVDKFDPTKGYRFST 199
Query: 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNM 378
Y YWWIRQG++RA+ S T+R+P H+ E+L I+ A+ ++ ++KG TP+++ IA L
Sbjct: 200 YAYWWIRQGITRAIATQSHTIRIPVHITEKLNKIKKAQRKISQQKGYTPTLEDIATELGT 259
Query: 379 SQKKVRNATEAIGKVFSLD 397
+ K++R I + SL+
Sbjct: 260 TAKQIREILVRIPRSVSLE 278
>gi|408532063|emb|CCK30237.1| RNA polymerase principal sigma factor hrdA [Streptomyces davawensis
JCM 4913]
Length = 437
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P ++ QL
Sbjct: 141 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSQLGL----- 188
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 189 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 246
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 247 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 306
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 307 EVAAHLDLPPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 345
>gi|218438398|ref|YP_002376727.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171126|gb|ACK69859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 23/207 (11%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
++ E + N +K Y++ + LL+ + V L+ +++ ++L D KE L
Sbjct: 1 MTKETVDN-VKAYLQEIGRTPLLSSQQEVELATQVQNMMALLD-----KENLT------- 47
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
PE I+ + A+ K++ +N+RLV+SIA++Y G DL+Q G IGL+
Sbjct: 48 ---------PEEIKIIQQGKRAKRKMISANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLI 98
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-E 362
RG+EKFD SKG+K STY YWWIRQ ++RA+ + SRT+RLP+HL E L ++ +L E
Sbjct: 99 RGVEKFDPSKGYKFSTYAYWWIRQAMTRAIADQSRTIRLPSHLTESLNKLKRITRQLTGE 158
Query: 363 KGVTPSVDRIAEYLNMSQKKVRNATEA 389
G P+ + IA L +S ++R +A
Sbjct: 159 LGRRPTEEEIATELEISMNELRTIRQA 185
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+LQ L E AR++++ +N+RLV+++A++Y + G ++ DLVQ G +GL R +EKFDS++
Sbjct: 104 DLQRRLREGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERAVEKFDSTR 163
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + +G T SV +
Sbjct: 164 GFRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASTEGRTASVTDL 223
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A L++S+ VR + + SL+
Sbjct: 224 ARELSVSEDTVRQTLARVPRSVSLE 248
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 122/199 (61%), Gaps = 2/199 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
+K Y+K + + LLT AE V L+K+I+ + L+ RL+E G EP+ A I+
Sbjct: 272 MKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNIT 331
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
EL+ L E A+ ++ +N+RLV+SIA+RY N DL+Q G +GL+RG EKFD
Sbjct: 332 EQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDF 391
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
+G+K STY +WWIRQ V+R++ + SRT+RLP HL E + + + ++ K G P+ +
Sbjct: 392 KRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHE 451
Query: 371 RIAEYLNMSQKKVRNATEA 389
+A+ + M+ +K++ +A
Sbjct: 452 ELADAMEMTVEKIKQIKKA 470
>gi|29832222|ref|NP_826856.1| RNA polymerase sigma factor [Streptomyces avermitilis MA-4680]
gi|29609340|dbj|BAC73391.1| putative RNA polymerase sigma factor [Streptomyces avermitilis
MA-4680]
Length = 389
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P ++ QL
Sbjct: 93 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSSTPDLDSQLGL----- 140
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 141 --DLDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 198
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 199 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 258
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 259 EVAAHLDLPGERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 297
>gi|345014897|ref|YP_004817251.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344041246|gb|AEM86971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 414
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LL+ E V L+++++ GL +E+LG P ++ QLA
Sbjct: 118 FRQYLREIGRIPLLSAVEEVELARRVEAGLFA-------EEKLGNTPDLDSQLAV----- 165
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 166 --DLDRLVVLGRVAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDY 223
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 224 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 283
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 284 EVAAHLDLLPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 322
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 121/203 (59%), Gaps = 8/203 (3%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT AE V L+K+I+ G+ H+L + E ++E L R +L
Sbjct: 81 YLNGIGRTALLTAAEEVDLAKRIEAGI-FAQHRL---DTATAEGTLESLDPQYR---RDL 133
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++++ + +LA+ L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 134 RAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGF 193
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + +RT+RLP HL E++ + K + ++ G PS +A+
Sbjct: 194 KFSTYATWWIRQAITRGMADQARTIRLPVHLVEQVNKLARIKRDMHQRQGREPSEAELAQ 253
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ + K+ + + SLD
Sbjct: 254 ESGIPEHKISDLLDHARDPVSLD 276
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 126/218 (57%), Gaps = 1/218 (0%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
R++ P + ++ Y+ + LL+H + + K+++ + L + L++ L P+
Sbjct: 7 RTVAQPRSTGDMVRTYLHEIGRVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPT 66
Query: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
+ A + IS EL +L + A++K++ +N+RLV++IA++Y + DL+Q G +
Sbjct: 67 KTEWAQAATISEAELDRVLRQGRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSL 126
Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
GL RG+EKFD S+G+K STY YWWIRQ ++RA+ + R++RLP H+ E+L I+ + L
Sbjct: 127 GLERGVEKFDPSRGYKFSTYAYWWIRQAITRAIAQQGRSIRLPIHITEKLNKIKKTQREL 186
Query: 361 EEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
++ G + + IA L + ++R+ + SLD
Sbjct: 187 SQQLGRSATSAEIAVALELEPAQIRDYLTLSRQPISLD 224
>gi|456390566|gb|EMF55961.1| hrdA protein [Streptomyces bottropensis ATCC 25435]
Length = 405
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 118/192 (61%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL +ERLG ++ A
Sbjct: 109 FRQYLREIGRIPLLTAVEEVELARRVEAGLFA-------EERLGNASDLDTRLAL----- 156
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 157 -DLDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 215
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ D
Sbjct: 216 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPDE 275
Query: 372 IAEYLNMSQKKV 383
+A +L+++ +V
Sbjct: 276 VAAHLDLAPGRV 287
>gi|227495524|ref|ZP_03925840.1| sigma factor [Actinomyces coleocanis DSM 15436]
gi|226831071|gb|EEH63454.1| sigma factor [Actinomyces coleocanis DSM 15436]
Length = 505
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 122/192 (63%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT A+ V L+++I+ GL + HK++ + ++L + LR
Sbjct: 208 VKDYLKQIGKVSLLTAADEVDLARRIEAGLYAE-HKIKTE--------GDELPSKLR--- 255
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQ ++ + L++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 256 RELQILVHDGQLSKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 315
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 316 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 375
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 376 LAKELDMTPEKV 387
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 133/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+L P + S R++
Sbjct: 89 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLTNTPDL-----STRLAV 136
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 137 -DLDRLVVLGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 195
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 196 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEE 255
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L ++ ++V +V L +E SL+ GE + G
Sbjct: 256 VAAHLGLTGERV-------TEVLRLAQEPV-SLHAPVGEEEDVALG 293
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 121/202 (59%), Gaps = 16/202 (7%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT AE V L+ KI+ GL D KL +E A
Sbjct: 141 LTGDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAAD-KLEKQE-----------AGE 188
Query: 248 LRISRPELQSILM--ECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
+ ++R E++ ++ + L A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R
Sbjct: 189 IELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIR 248
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L++
Sbjct: 249 AVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDL 308
Query: 364 GVTPSVDRIAEYLNMSQKKVRN 385
G P+ + I ++MS +VR
Sbjct: 309 GRDPTPEEIGAEMDMSADRVRE 330
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT+ E + K+++ + + L E+ P+ E+ A ++ +
Sbjct: 26 VRTYLHEIGKIPLLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQEEWAQAVGLEP 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L L + + A+ K++ +N+RLV+S+A++Y ++ DLVQ G +GL R ++KFD +
Sbjct: 86 NALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPT 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KGFK STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ A+ +L ++ G +
Sbjct: 146 KGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLAQDLGRVATAAE 205
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+AE L + ++VR + SLD
Sbjct: 206 VAETLEIKPEQVRECLSLARQPISLD 231
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 121/202 (59%), Gaps = 16/202 (7%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT AE V L+ KI+ GL D KL +E A
Sbjct: 138 LTGDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAAD-KLEKQE-----------AGE 185
Query: 248 LRISRPELQSILM--ECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
+ ++R E++ ++ + L A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R
Sbjct: 186 IELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIR 245
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L++
Sbjct: 246 AVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDL 305
Query: 364 GVTPSVDRIAEYLNMSQKKVRN 385
G P+ + I ++MS +VR
Sbjct: 306 GRDPTPEEIGAEMDMSADRVRE 327
>gi|133468|sp|P27785.1|RPOD_STRAU RecName: Full=RNA polymerase sigma factor RpoD
Length = 317
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 121/193 (62%), Gaps = 16/193 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG ++ QLA
Sbjct: 21 FRQYLREIGRIPLLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV----- 68
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 69 --DLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 126
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 127 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAE 186
Query: 371 RIAEYLNMSQKKV 383
+A +L ++ ++V
Sbjct: 187 EVAVHLELTPERV 199
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 121/197 (61%), Gaps = 20/197 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS- 251
++ Y+K + LLT E V L+K+I+ GL + E+L+ + R++
Sbjct: 96 VRMYLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------AAEKLSEARRVTV 139
Query: 252 --RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
R +L+++ + ++A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EKF
Sbjct: 140 ALRVDLEAVERDGNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+
Sbjct: 200 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPT 259
Query: 369 VDRIAEYLNMSQKKVRN 385
+ I + ++++ KVR
Sbjct: 260 PEEIGKEMDLTPDKVRE 276
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 15/223 (6%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-------- 237
P + ++ Y+ + LL+H + + L K+++ ++L L +KE L
Sbjct: 69 PVYTTDAVRSYLHEIGRVPLLSHEDEIVLGKQVQKMMAL----LAIKEELAAKLSEAEGE 124
Query: 238 --EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
E S AA+ I EL + ++ K++ +N+RLV+++A++Y + DL+
Sbjct: 125 EAEVSNADWAAAASIPESELDHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLI 184
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355
Q G +GL RG+EKFD KG+K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+
Sbjct: 185 QEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKR 244
Query: 356 AKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ L +K G +P+ I + L + K+VR + SLD
Sbjct: 245 VQRELSQKLGRSPNAAEIGQELELEPKQVREYLSIARQPISLD 287
>gi|441180909|ref|ZP_20970215.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440614305|gb|ELQ77593.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 398
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + KLRL L + +++
Sbjct: 102 FRQYLREIGRIPLLTAVEEVELARRVEAGL-FAEEKLRLAPDLDSQLALD---------- 150
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 151 --LDKLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 208
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 209 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPAPEE 268
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A L++ ++V +V L +E SL+ GE + G
Sbjct: 269 VAAQLDLPPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 306
>gi|302534283|ref|ZP_07286625.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
gi|302443178|gb|EFL14994.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
Length = 361
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 120/193 (62%), Gaps = 16/193 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L ++ QLA
Sbjct: 65 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLAGATDLDSQLAV----- 112
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 113 --DLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 170
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 171 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAE 230
Query: 371 RIAEYLNMSQKKV 383
+A +L ++ ++V
Sbjct: 231 EVAAHLELTPERV 243
>gi|159037062|ref|YP_001536315.1| RNA polymerase sigma factor SigB [Salinispora arenicola CNS-205]
gi|157915897|gb|ABV97324.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 328
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 130/219 (59%), Gaps = 22/219 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ +LLT A+ V LS++I+ GL + KL C P ++A+LR
Sbjct: 31 VRAYLYGIGKTKLLTAAQEVELSRRIEAGL-FAEAKL-----AACTP----VSATLR--- 77
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ + +E A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +
Sbjct: 78 ADLELVAVEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 137
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + SRT+R+P H+ E++ ++R + G P+V
Sbjct: 138 KGYKFSTYATWWIRQAITRAMADQSRTIRIPVHMVEQVNRMVRTRRDLSVSLGREPTVTE 197
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
+A L++ + + I ++ S DRE SL+ GE
Sbjct: 198 VARALDVPEVQ-------IIELISYDREPV-SLDQAVGE 228
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 118/204 (57%), Gaps = 1/204 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L+++++ +++ K L + LG P + +A + +S +
Sbjct: 84 AFFKEMARYPLLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQ 143
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
++ L A+ +++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 144 VRQNLQLGRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKG 203
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 373
+K STY YWWIRQG++R + ++RT+RLP H+ E+L ++ A L E P+ +A
Sbjct: 204 YKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAHRDLRRELQRNPTEVELA 263
Query: 374 EYLNMSQKKVRNATEAIGKVFSLD 397
+ L+M+ ++R + + SL+
Sbjct: 264 QSLDMTPDQLRGLQQVRRRSLSLN 287
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT + + +++++ +++ +L L P++ + A +++S
Sbjct: 22 VRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSE 81
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL L + A+ K++ +N+RLV+SIA++Y ++ DL+Q G +GL RG+EKF+ +
Sbjct: 82 QELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPA 141
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
G++ STY YWWIRQG++RA+ + R +RLP H++E+L I+ + L + G P+
Sbjct: 142 LGYRFSTYAYWWIRQGITRAIAQQGRAIRLPIHINEKLNKIKRVQRELSQTLGRIPTSTE 201
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L++ ++R + SLD
Sbjct: 202 IANALSLKPSQIREFLLLATRTISLD 227
>gi|386846220|ref|YP_006264233.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359833724|gb|AEV82165.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 333
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +EQ ISR EL
Sbjct: 42 YLHEISRTPLLDAAREVELSKAIEAGLY-------------AEHLLEQGEERRGISREEL 88
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ ++ E S A++ + +N+RLV+SIA+RY G M DL+Q G GL+R +EKFD +G+
Sbjct: 89 ERLVTEGSRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYERGY 148
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WW+RQ +SRA+ + RT+RLP HL E + +RN +L E G P ++IA
Sbjct: 149 KFSTYATWWVRQAISRAIAQQERTVRLPVHLVEDVNRMRNVTRQLVRELGGDPEPEQIAA 208
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L ++ ++V T SLD
Sbjct: 209 ALGVTVERVNELTRWAQDTVSLD 231
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
Q+AA L ++ +L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL
Sbjct: 111 QVAAELDMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGL 170
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
R EKFD KG+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L ++ A+ L++
Sbjct: 171 NRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQ 230
Query: 363 K-GVTPSVDRIAEYLNMS 379
K PS +AE L ++
Sbjct: 231 KLARNPSEAEMAEALEIT 248
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S EL+ IL A+++++ +N+RLV+SIA++Y N G D+ DL+Q G +GL + +EKF
Sbjct: 135 LSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRGLDLLDLIQEGTLGLEKAVEKF 194
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPS 368
D KG+ STY YWWIRQG++RA+ SR++R+P H+ E+L L++ + +L + G TP
Sbjct: 195 DYRKGYHFSTYSYWWIRQGMTRAIATQSRSIRIPIHITEKLNLLKKTQRQLSQALGRTPK 254
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ +AE + M+ ++R+ I + SL+
Sbjct: 255 AEELAEKMEMTTFELRSFLSQIPRSISLE 283
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL E + L+++IK ++ + + L LG P +LA + +S EL + +
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG+K STY YWW
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 152
Query: 325 IRQGVSRALVENSRTLRLPNHLHERL----GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 380
IRQG++R + RT+RLP H+ E+L G+ ++ + L K P+ D +AE L++S
Sbjct: 153 IRQGITRTIANQGRTVRLPVHVVEQLNKLQGIHQDLRRSLRRK---PTEDELAEALSISP 209
Query: 381 KKVRNATEAIGKVFSLD 397
+++R + K SL+
Sbjct: 210 QQLRLLEQVRRKSLSLN 226
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + ++ E +G P+ + + ++
Sbjct: 68 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAIN 127
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ Q L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 128 MEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 187
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 368
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + K+ +E P+
Sbjct: 188 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPT 247
Query: 369 VDRIAEYLNMSQKKVR 384
+ IA + M+ +K+R
Sbjct: 248 EEEIATRMEMTIEKLR 263
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 119/197 (60%), Gaps = 6/197 (3%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE-----RLGCEPSMEQLAAS 247
+K Y+K + S LLT + V L+ +I+ + L+ + +L+E + E S A +
Sbjct: 256 MKTYLKDIGSVSLLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIA 315
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
++ EL+ L A+ +++ +N+RLV+SIA+RY N DL+Q G +GL+RG E
Sbjct: 316 ANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAE 375
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD +G+K STY +WWIRQ V+R++ + SRT+RLP HL E + + + +L K G
Sbjct: 376 KFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQLVMKYGRD 435
Query: 367 PSVDRIAEYLNMSQKKV 383
P+ + IAE ++M+ +K+
Sbjct: 436 PTTEEIAEVMDMTVEKI 452
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 102/145 (70%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q G +GL + ++KFD SK
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLEQAVKKFDPSK 223
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRI 372
G++ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ + +G T +V+ I
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATQSRLIRLPVHITEKLNKIKKAQRKISQMRGRTATVEEI 283
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L ++ ++VR + + SL+
Sbjct: 284 AQELALTPEEVRELLMKVPRSVSLE 308
>gi|395772635|ref|ZP_10453150.1| RNA polymerase sigma factor [Streptomyces acidiscabies 84-104]
Length = 362
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT E V L+++++ GL + E+L P ++ QLA
Sbjct: 66 FRQYLREIGRIPLLTAVEEVELARRVEAGLFAE-------EKLLNTPDLDSQLAL----- 113
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 114 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 171
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 172 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 231
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A L+++ +V G+V L +E SL+ GE + G
Sbjct: 232 EVAAQLDLAPARV-------GEVLRLAQEPV-SLHAPVGEEDDVALG 270
>gi|297194519|ref|ZP_06911917.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
gi|297152294|gb|EFH31643.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
Length = 366
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P + QLA
Sbjct: 70 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLANTPDPDSQLAV----- 117
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 118 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 175
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 176 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 235
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L ++ +E + +V L +E SL+ GE + G
Sbjct: 236 EVATHLELT-------SERVSEVLRLAQEPV-SLHAPVGEEDDVALG 274
>gi|291459241|ref|ZP_06598631.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418495|gb|EFE92214.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
Length = 398
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 88/122 (72%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
LAR++LV +N+RLV+SIA+RY G + DL+Q G +GL++G+EKF+ KGFK+STY W
Sbjct: 158 LARQRLVEANLRLVVSIAKRYTGRGMSILDLIQEGNLGLMKGVEKFEPDKGFKLSTYATW 217
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKK 382
WIRQG++RAL + SRT+R+P H+ E + + + RL E G PS +A LNM+++K
Sbjct: 218 WIRQGITRALADQSRTIRVPVHMVESINKVTRTQRRLTLELGYEPSPKELAASLNMTEEK 277
Query: 383 VR 384
++
Sbjct: 278 LK 279
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 5/200 (2%)
Query: 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL-QSILMEC 262
ELLT E L K+K + + L +G PS+ + AA+ P L + +++
Sbjct: 3 ELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAA---CSPRLFREMMLTA 59
Query: 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVY 322
A++++V N+RLV+SIA+RY +G ++ DLVQ G +GL R EKFD KGFK STY
Sbjct: 60 KEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYAS 119
Query: 323 WWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQK 381
WWI+Q V R++ +SRT+RLP H+H L +R A+ L+++ G TP+ + +A ++M+ +
Sbjct: 120 WWIQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMAVEMDMTIE 179
Query: 382 KVRNATEAIGKVFSLDREAF 401
K SL+R +
Sbjct: 180 KYNKMIRTTRNAISLERPKY 199
>gi|429197710|ref|ZP_19189588.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
gi|428666600|gb|EKX65745.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
Length = 429
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P ++ +LA
Sbjct: 133 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSELAL----- 180
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 181 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 238
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 239 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGHEPTPE 298
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ ++V +V L +E SL+ GE + G
Sbjct: 299 EVAAHLDLLPERV-------SEVLRLAQEPV-SLHAPVGEEDDVALG 337
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 8/227 (3%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
L QN K P + ++ Y+ + LLTH + + L K+++ + L + K L
Sbjct: 6 LDQNNDK-------PIFSADMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEEL 58
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
+E LG E + E+ IS+ ELQ + E + A+ K++ +N+RLV++IA++Y +
Sbjct: 59 EEELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
DL+Q G +GL RG+EKFD ++G+K STY YWWIRQ ++RA+ + +R +RLP H+ E+L
Sbjct: 119 LDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLN 178
Query: 352 LIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
I+ + L +K G + IAE L + ++R + SLD
Sbjct: 179 KIKKVQRELAQKLGRNATPTEIAEELGLEPSQIREYLSIARQPISLD 225
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPE 254
+ K + LLT E V L++ +K ++ + +L +L PS +LA ++ + + +
Sbjct: 55 FFKEMARYPLLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQ 114
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L + L + +A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG
Sbjct: 115 LDNRLYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKG 174
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY YWWIRQ ++R + +SRT+RLP H+ E+L ++ A+ L++ P+ +A
Sbjct: 175 YKFSTYAYWWIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRELKQSLQRNPTEVELA 234
Query: 374 EYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
E + +++ +A+ ++ L R++ SLN G
Sbjct: 235 EEMGINE-------QALHQLLQLKRQSL-SLNHRVG 262
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 147/268 (54%), Gaps = 4/268 (1%)
Query: 91 AEPPNSIEEESSELDYSVEALLLLQKSM-LEKQWNLSFERTVLTDSPSKKTHKKVPVTCS 149
EP N I+ L S EA LL QK L+ + E T L++ ++
Sbjct: 136 VEPTNVIDLARKALSASKEAALLAQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRL 195
Query: 150 GVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHA 209
++ RR+ K+I + S + K++ P ++ L+ ++ G +++LLT
Sbjct: 196 ERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDP---KDPLRLFLWGPETKQLLTAK 252
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269
E L +++ +SL++ K + K + G +P++ + A ++ +S +QS L + +REKL
Sbjct: 253 EESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKL 312
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 329
+ +N+R+V+ IA++Y G + DL+Q G +GL++ IEKF G + +TY YWWIRQ V
Sbjct: 313 INANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTV 372
Query: 330 SRALVENSRTLRLPNHLHERLGLIRNAK 357
+A+ ++SRT+RLP +++ LG + AK
Sbjct: 373 RKAIFQHSRTIRLPENVYHTLGKVSEAK 400
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 2/210 (0%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K YVK + + ++LT E + L+++IK G+ ++ + L++ LG +P+ E+ + +
Sbjct: 73 DTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVGL 132
Query: 251 -SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
S +++ L S ++ ++ +N+RLV+S A+ Y G DLVQ G GL + EKF
Sbjct: 133 KSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATEKF 192
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D KGF+ STY WWI+QG+ RA+ + SR +RLP H+H+ L IR AK E P+
Sbjct: 193 DPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREPT 252
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ +AE ++ +K+ KV S+D+
Sbjct: 253 LAELAEATGLTPQKIVFYDTVKDKVSSIDK 282
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 117/195 (60%), Gaps = 20/195 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS- 251
++ Y+K + LLT E V L+K+I+ GL + E+LAA R S
Sbjct: 104 VRMYLKAIGRVRLLTAEEEVDLAKRIEAGLF----------------ASEKLAAIRRTSP 147
Query: 252 --RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
R +L++I + +A+ KLV +N+RLV+SIA+RY G + DL+Q G +GL+R +EKF
Sbjct: 148 RLRRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRAVEKF 207
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KG+K STY WWIRQ V+RA+ + RT+R+P H+ E + + R + L++ G PS
Sbjct: 208 DYTKGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMVETINKVTRIQRQLLQDLGREPS 267
Query: 369 VDRIAEYLNMSQKKV 383
+ IA ++++ +V
Sbjct: 268 PEEIATQVDLAPHRV 282
>gi|363899334|ref|ZP_09325843.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|395208255|ref|ZP_10397496.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
gi|361958374|gb|EHL11673.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|394705836|gb|EJF13360.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
Length = 385
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSK----KIKTGLSLDDHKLRLKERLGCEP 239
+ P + ++ LK KGV E+ T E++ L K + G +D + L E +G E
Sbjct: 57 VIPTVDEDALKKLEKGVEKED--TEDELLALEDEDFSKEEDGEDIDLDAVDLLEGIGTED 114
Query: 240 S----MEQLAASLRISRPELQSILME----CSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
++++ ++ E S+ M+ A+++L+ +N+RLV+SIA+RY G
Sbjct: 115 PVRMYLKEIGTVPLLTAEEEYSLAMKKQEGDEYAKQRLIEANLRLVVSIAKRYTGRGMSF 174
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
DLVQ G +GL++G+EKFD KGFK+STY WWIRQ V+RAL + +RT+R+P H+ E +
Sbjct: 175 LDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWWIRQSVTRALADQARTIRVPVHMVETIN 234
Query: 352 LIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVR 384
+ + +L E G PSV +AE+L+M+++KV+
Sbjct: 235 KMSKMQRKLTLELGYEPSVKELAEHLDMTEEKVQ 268
>gi|357399134|ref|YP_004911059.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355181|ref|YP_006053427.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337765543|emb|CCB74252.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365805689|gb|AEW93905.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 393
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 131/226 (57%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + E+L P ++ A
Sbjct: 97 FRQYLREIGRIPLLTAEEEVELARRVEAGLFAE-------EKLEHTPDLDTRLAG----- 144
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 145 -DLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 203
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P
Sbjct: 204 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGYEPCAAD 263
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A+ L++++++V G+V L +E SL+ G+ + G
Sbjct: 264 VADQLDLTEERV-------GEVLRLAQEPV-SLHAPVGDEDDVALG 301
>gi|21220928|ref|NP_626707.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289771799|ref|ZP_06531177.1| RNA polymerase principal sigma factor hrdA [Streptomyces lividans
TK24]
gi|19856645|sp|P18182.2|HRDA_STRCO RecName: Full=RNA polymerase principal sigma factor HrdA
gi|6759560|emb|CAB69753.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289701998|gb|EFD69427.1| RNA polymerase principal sigma factor hrdA [Streptomyces lividans
TK24]
Length = 396
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL+ AE V L+++++ GL + E+L C P ++ A
Sbjct: 100 FRQYLREIGRIPLLSAAEEVDLARRVEAGLFAE-------EKLRCSPGLDDRLAL----- 147
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ LA+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 148 -DLDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 206
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+
Sbjct: 207 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQE 266
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ A E +G+V L +E SL+ GE + G
Sbjct: 267 VAAHLDL-------APERVGEVLRLAQEPV-SLHAPVGEEDDVALG 304
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+S EL+ L + AR++++ +N+RLV+++A++Y G ++ DLVQ G +GL R +EK+
Sbjct: 121 LSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKY 180
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPS 368
D ++GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ E G S
Sbjct: 181 DPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRQIASEHGRLAS 240
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
V +A+ L +S++ +R + + SLD
Sbjct: 241 VADLAKELGLSEEVIRLTLMRVPRSVSLD 269
>gi|581612|emb|CAA37172.1| unnamed protein product [Streptomyces coelicolor A3(2)]
Length = 396
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL+ AE V L+++++ GL + E+L C P ++ A
Sbjct: 100 FRQYLREIGRIPLLSAAEEVDLARRVEAGLFAE-------EKLRCSPGLDDRLAL----- 147
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ LA+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 148 -DLDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 206
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+
Sbjct: 207 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQE 266
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +L++ A E +G+V L +E SL+ GE + G
Sbjct: 267 VAAHLDL-------APERVGEVLRLAQEPV-SLHAPVGEEDDVALG 304
>gi|269929031|ref|YP_003321352.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
gi|269788388|gb|ACZ40530.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 359
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 114/204 (55%), Gaps = 19/204 (9%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + V +LLTH E + S+ ++ GL ++RL E EL
Sbjct: 73 YFRDVGGHQLLTHREEIEYSRAVRAGLEA-------RKRLEAGEDSE-----------EL 114
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
I+ AREKL+ N+RLV+SIA++Y G + DL+Q G IGL+ +E++D G+
Sbjct: 115 HQIIERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGY 174
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDR-IAE 374
+ STY +WIRQ + RA+ SRT+R+P H+H+ + +R + +LE+ P+ D+ +A+
Sbjct: 175 RFSTYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQ 234
Query: 375 YLNMSQKKVRNATEAIGKVFSLDR 398
L++ +++ A AI + SLD+
Sbjct: 235 ALDLDVERIEQARSAIPRTSSLDK 258
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 124/208 (59%), Gaps = 6/208 (2%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE- 254
Y++ + LL + + L+K+I+T L+ K +K + G EP+ E+ A + +S E
Sbjct: 117 YLQEIGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEE 176
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA--DLVQGGLIGLLRGIEKFDSS 312
L+ ++ +LAR++LV +N+R V+++A++Y M+ DL+Q G IGL+R +EKFD
Sbjct: 177 LRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVEKFDPR 236
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
G++ +TY WWIRQ ++R++ +SR +RLP H HE++ I+ A + L G P+
Sbjct: 237 MGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAE 296
Query: 372 IAEYLNMSQKKVRNATEAIGKV--FSLD 397
IAE++ + ++R E+ V SLD
Sbjct: 297 IAEHVGLDPSRMRKFVESAAAVATVSLD 324
>gi|344999511|ref|YP_004802365.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344315137|gb|AEN09825.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 355
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL A+ V L+++++ GL + ERL P + A
Sbjct: 59 FRQYLREIGRIPLLGAADEVELARRVEAGLFAE-------ERLAATPGPDTRLAQ----- 106
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L ++++ +A +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 107 -DLGRLVVQGRMAERRLIEANLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDYT 165
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G PS +
Sbjct: 166 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGHEPSAEE 225
Query: 372 IAEYLNMSQKKV 383
+A L+++ ++V
Sbjct: 226 VAAQLDLTPERV 237
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 117/203 (57%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL AE V L+K+I+ GL H L+ K+RLG + +L
Sbjct: 26 YLNGIGKTALLDAAEEVELAKRIEAGLYAQ-HLLKTKKRLGQN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++I+ + AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 73 EAIVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 132
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L + G P+ + +AE
Sbjct: 133 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQTLGREPTDEELAE 192
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + + SLD
Sbjct: 193 ESGIPVEKIADLLDHSRDPVSLD 215
>gi|336320563|ref|YP_004600531.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
gi|336104144|gb|AEI11963.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
Length = 541
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + ERLG +ME +I R
Sbjct: 245 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE-------ERLGSGATMEP-----KIRR 292
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 293 -ELEWIAQDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 351
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 352 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 411
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 412 LAKELDMTPEKV 423
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 114/187 (60%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A++L++
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L M+
Sbjct: 248 AEALEMT 254
>gi|291302005|ref|YP_003513283.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571225|gb|ADD44190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 323
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 116/194 (59%), Gaps = 16/194 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ L+ AE V L+K I+TGL E +P+ + L++ R
Sbjct: 25 VRAYLNGIGKHRLINAAEEVDLAKAIETGL--------FAEWRLSDPA--RPIDDLQLER 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ I+ E A+ L+ +N+RLV+SIA+RY G + DL+Q G +GL+R +EKFD +
Sbjct: 75 -DLRQIVAEGRRAKSMLLKANLRLVVSIAKRYVGRGVALLDLIQEGNLGLIRAVEKFDYT 133
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE---EKGVTPSV 369
KGFK STY WWIRQ ++RA+ + +RT+R+P H E++ I AK+R E E+G P
Sbjct: 134 KGFKFSTYATWWIRQAITRAMADQARTIRVPAHTAEQINRI--AKIRRELTAEQGREPRH 191
Query: 370 DRIAEYLNMSQKKV 383
+ IAE + + +V
Sbjct: 192 EEIAERMGLEPYRV 205
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
Query: 199 GVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSI 258
G +LT E +K L+ + R+ E EP+ Q A ++ I R L +
Sbjct: 123 GAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKM 182
Query: 259 LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIS 318
L +RE++ S RLV+SIA RY G + DL+Q G IGLLRG E+FD +G+K+S
Sbjct: 183 LCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLS 242
Query: 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLN 377
TYVYWWIRQ + RA+ SR +RLP + E + I A+ L + P+ D IAE+++
Sbjct: 243 TYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFID 302
Query: 378 MSQKKVRNATEAIGKVFSLDR 398
++ VR +E S+D+
Sbjct: 303 VNVSTVRLVSERSRTPISVDQ 323
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 188 LIQNRLK----GYVKGVVSEELLTHAEVVRLSKKIKTG---------LSLDDHKLRLKER 234
LI++RL Y++ V + +LLT E V LS+KI+ L L+ + L+
Sbjct: 251 LIKHRLSDPICSYLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRD 310
Query: 235 LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294
+G EP+ + + ++ +++ + + E A++KLV SN+RLV+SI + Y G + DL
Sbjct: 311 MGREPTRSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDL 370
Query: 295 VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIR 354
+Q G +GL+RG EKFD GFK STY WWIRQ V+R++ + SR +RLP H++E + I
Sbjct: 371 IQRGSLGLIRGAEKFDPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRIN 430
Query: 355 NAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
+++ + E++G + +A + +S +K+
Sbjct: 431 KSRMMIAEDQGRQARDEEVATAVGISVEKL 460
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 112/186 (60%), Gaps = 1/186 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIA 373
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A++ ++ P+ +A
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQILKQDLQRNPNERELA 247
Query: 374 EYLNMS 379
E L ++
Sbjct: 248 ERLEIT 253
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 166 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR- 218
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 219 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 276
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 277 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 334
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 335 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 365
>gi|374990114|ref|YP_004965609.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297160766|gb|ADI10478.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 453
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 120/193 (62%), Gaps = 16/193 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LL+ AE V L+++++ GL + E+L P ++ QLA
Sbjct: 157 FRQYLREIGRIPLLSAAEEVELARRVEAGLFAE-------EKLSNTPDLDTQLAH----- 204
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
+ +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD
Sbjct: 205 --DFDQLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDY 262
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
++G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 263 ARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE 322
Query: 371 RIAEYLNMSQKKV 383
+A +L++ ++V
Sbjct: 323 EVAHHLDLLPERV 335
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V LSK+I+ GL H L K+R+G + + +L
Sbjct: 29 YLNGIGKTALLKAEDEVELSKRIEAGLYAQ-HILATKKRIGP------------VRKSDL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++++ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 76 KAVVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 135
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L ++ G ++D +AE
Sbjct: 136 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGRESTLDELAE 195
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ K+ + SLD
Sbjct: 196 ESGIPAHKIEELLDHSRDPVSLD 218
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R ++KFD +K
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVKKFDPTK 223
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRI 372
G++ STY YWWIRQG++RA+ S+ +RLP H+ E+L I+ A+ ++ + +G T +V+ I
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATKSQIIRLPVHITEKLNRIKKAQRKISQMRGRTATVEEI 283
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L ++ + VR + + SL+
Sbjct: 284 AQELALTPEAVRELLMTVPRSVSLE 308
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R ++KFD +K
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVKKFDPTK 223
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRI 372
G++ STY YWWIRQG++RA+ S+ +RLP H+ E+L I+ A+ ++ + +G T +V+ I
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATKSQIIRLPVHITEKLNRIKKAQRKISQMRGRTATVEEI 283
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L ++ + VR + + SL+
Sbjct: 284 AQELALTPEAVRELLMTVPRSVSLE 308
>gi|302866072|ref|YP_003834709.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|315502628|ref|YP_004081515.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|302568931|gb|ADL45133.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
gi|315409247|gb|ADU07364.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 328
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 28/222 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y+ G+ +LLT A+ V LSK+I+ GL + E+L C P +L A L +
Sbjct: 31 VRAYLNGIGRTKLLTAAQEVELSKRIEAGLFAE-------EKLATCTPVSAELHADLAL- 82
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
I E A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD
Sbjct: 83 ------IAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 136
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE---EKGVTPS 368
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E++ R ++R E G P+
Sbjct: 137 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVN--RMVRVRRELSVTLGREPT 194
Query: 369 VDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
V +A L + + +V ++ S DRE SL+ GE
Sbjct: 195 VSEVATALEIPEFQVI-------ELISYDREPV-SLDQAVGE 228
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E P+ + A +L+++
Sbjct: 66 AFFKEMARYPLLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANER 125
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 126 QLENRLYRGRCAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNK 185
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ D +
Sbjct: 186 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQNLQRNPNEDEL 245
Query: 373 AEYLNMSQ 380
A+ L +S+
Sbjct: 246 AQELEVSR 253
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
+Q A I EL I A+++++ +N+RLV+S+A++Y + G ++ DL+Q G +G
Sbjct: 156 QQWATEANIDVKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLG 215
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE 361
L + +EKFD KG++ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ + ++
Sbjct: 216 LEKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKQVQRKIS 275
Query: 362 E-KGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ KG + +++ I + LNMS +VR+ I + SL+
Sbjct: 276 QAKGRSATLEEIGKELNMSSTQVRDVLMKIPRSVSLE 312
>gi|358461550|ref|ZP_09171710.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357073123|gb|EHI82638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 416
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 20/211 (9%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+ + LLT E V L+K+++ GL + E+LAA +
Sbjct: 118 DSVRQYLSQIGRVRLLTAEEEVDLAKRVEAGLF----------------AAEKLAADTGL 161
Query: 251 S---RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+ R +L + + +A+ +LV +N+RLV+SIA+RY G DL+Q G +GL+R +E
Sbjct: 162 AVRLRADLTWVERDGEVAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAVE 221
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G
Sbjct: 222 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 281
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
P+ + IA+ ++++ KVR + + SL+
Sbjct: 282 PTPEEIAKEMDLTPDKVREIQKVAQEPISLE 312
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT + + +++++ +++ +L L P++ + A +++S
Sbjct: 22 VRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSE 81
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL L + A+ K++ +N+RLV+SIA++Y ++ DL+Q G +GL RG+EKF+ +
Sbjct: 82 QELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPA 141
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
G++ +TY YWWIRQG++RA+ + R +RLP H++E+L I+ + L + G P+
Sbjct: 142 LGYRKTTYAYWWIRQGITRAIAQQGRAIRLPIHINEKLNKIKRVQRELSQTLGRIPTSTE 201
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L++ ++R + SLD
Sbjct: 202 IANALSLKPSQIREFLLLATRTISLD 227
>gi|309791990|ref|ZP_07686468.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225984|gb|EFO79734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 396
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 124/203 (61%), Gaps = 15/203 (7%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
+S L+ + ++ Y++ + LLT + RL++ I+ G ++++K+ +P+ +
Sbjct: 90 LSDALLGDSVRLYLREIGQVPLLTAEQEKRLAQTIERG---QKAQVKIKD---LDPTSAE 143
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
EL+ + + + AR+++ +N+RLV+SIA+RY + G + DL+Q G +GLL
Sbjct: 144 AV--------ELRRQIEKGNDARQQMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLL 195
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
R IEKFD KGFK STY WWI+Q +SRAL + SR +RLP HL E L I+ A+ +L ++
Sbjct: 196 RAIEKFDHDKGFKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQAARRQLTQR 255
Query: 364 -GVTPSVDRIAEYLNMSQKKVRN 385
G P +A+ L+MSQ+K+R
Sbjct: 256 LGREPYDSELADELSMSQEKLRE 278
>gi|238063483|ref|ZP_04608192.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237885294|gb|EEP74122.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 334
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 24/227 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y+ G+ +LLT + V L+K+I+ GL + E+L C P L
Sbjct: 37 VRAYLNGIGRTKLLTAEQEVELAKRIEAGLFAE-------EKLATCTPVSTVL------- 82
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
R +L+ I+ E A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD
Sbjct: 83 RADLEIIVAEGRTAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 142
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E++ + A+ L G P+V
Sbjct: 143 TKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELAVTLGREPTVA 202
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+A +++ + +V ++ S DRE SL+ GE G
Sbjct: 203 EVARAMDVPEFQVI-------ELISYDREPV-SLDQAVGEDGESALG 241
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 172 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR- 224
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 225 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 282
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 283 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 340
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 341 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 371
>gi|291458966|ref|ZP_06598356.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418220|gb|EFE91939.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
Length = 388
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD KGFK+STY WW
Sbjct: 151 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 210
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE+L+MS+ KV
Sbjct: 211 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMSEDKV 270
Query: 384 R 384
+
Sbjct: 271 Q 271
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 137 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRIAEEEG-----EKLSTQMR- 189
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 190 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 247
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 248 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 305
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 306 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 336
>gi|427390144|ref|ZP_18884550.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733159|gb|EKU95965.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 585
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 116/192 (60%), Gaps = 11/192 (5%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V LSK+I+ GL + L + +P ++ R R
Sbjct: 286 VKDYLKQIGRVALLNAAEEVELSKRIEAGL----YAQHLLDEGDFDPQEDR-----RYMR 336
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 337 -ELRIIARDGRSAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLVRAVEKFDYT 395
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + SRT+R+P H+ E + L R + L++ G P+ +
Sbjct: 396 KGYKFSTYATWWIRQAITRAMADQSRTIRIPVHMVEVINKLARVQRQMLQDLGREPTTEE 455
Query: 372 IAEYLNMSQKKV 383
+A L+M+++KV
Sbjct: 456 LAHELDMTEEKV 467
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 199 GVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSI 258
G +LT E +K L+ + R+ E EP+ Q A ++ I R L +
Sbjct: 16 GAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKM 75
Query: 259 LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIS 318
L +RE++ S RLV+SIA RY G + DL+Q G IGLLRG E+FD +G+K+S
Sbjct: 76 LCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLS 135
Query: 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLN 377
TYVYWWIRQ + RA+ SR +RLP + E + I A+ L + P+ D IAE+++
Sbjct: 136 TYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFID 195
Query: 378 MSQKKVRNATEAIGKVFSLD 397
++ VR +E S+D
Sbjct: 196 VNVSTVRLVSERSRTPISVD 215
>gi|393771724|ref|ZP_10360192.1| RNA polymerase primary sigma factor [Novosphingobium sp. Rr 2-17]
gi|392722735|gb|EIZ80132.1| RNA polymerase primary sigma factor [Novosphingobium sp. Rr 2-17]
Length = 673
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 125/212 (58%), Gaps = 18/212 (8%)
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL-------MECSLAR 266
+SKK K + +++ ER+ E S +AA+ ++ PE + I+ E +A+
Sbjct: 379 MSKKDKKWAAFAENEADPVERIRAEVS--DIAAATGMALPEFRRIVNMVQKGEREARIAK 436
Query: 267 EKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 326
+++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WWIR
Sbjct: 437 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 496
Query: 327 QGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385
Q ++R++ + +RT+R+P H+ E + L+R ++ L E+G P+ + +AE L+M +KVR
Sbjct: 497 QAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR- 555
Query: 386 ATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KV + +E SL G+ H G
Sbjct: 556 ------KVMKIAKEPI-SLETPIGDEEDSHLG 580
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L +I+ ++L+ K RL+ + G EP++ + A ++ +S
Sbjct: 223 LRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSC 282
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L+ L + +REKL+ +N+R+V+ IA+RY N G + DL+Q G +GL++ IEKF
Sbjct: 283 HVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQ 342
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDR 371
G + +TY YWWIRQ +++A+ ++SRT+RLP +++ LG + AK ++E P+ +
Sbjct: 343 AGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEE 402
Query: 372 IAEYLNMSQKKV 383
IA + ++ K+
Sbjct: 403 IARRVGIAIDKL 414
>gi|358457491|ref|ZP_09167709.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357079327|gb|EHI88768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 385
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 21/223 (9%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT V L+K+I+ G+ HKL A+ R +L
Sbjct: 91 YLRDIGKVALLTAEGEVDLAKRIEAGV-FAAHKL-----------ATATGATTPRERRDL 138
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+++ + ++A+ +LV +N+RLV+S+A+RY + G D+VQ G +GL+R +EKFD +KGF
Sbjct: 139 EAVEADGNIAKRRLVEANLRLVVSVAKRYVSRGMPFLDVVQEGNLGLIRAVEKFDYAKGF 198
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAE 374
K STY WWIRQ +SR+L + +RT+R+P HL E + L+R + + E G PS + +A
Sbjct: 199 KFSTYATWWIRQAISRSLADQARTIRIPVHLVEIINRLVRVQRQLVSELGRDPSPEELAA 258
Query: 375 YLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
++++ ++VR ++ + RE SL+ GE H G
Sbjct: 259 EMDLTPQRVR-------EILMISREPV-SLDTPIGEDASAHFG 293
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 168 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR- 220
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 221 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 278
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 279 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 336
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 337 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 367
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+LA +R
Sbjct: 145 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRIAEEEG-----EKLATQMR- 197
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 198 --RDLRWIIRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 255
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 256 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 313
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 314 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 344
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 212 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVVEEEG-----EKLSTQMR- 264
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 265 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 322
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 323 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 380
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 381 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 411
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 117/194 (60%), Gaps = 8/194 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y++ + LLT E V L++ I+ GL ++ R+ P+ E+L
Sbjct: 87 LRQYLREIGRVRLLTAVEEVELARAIEAGLFAEEALDRVPPAAERRPADERLLG------ 140
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +
Sbjct: 141 -DLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLLDLIQEGNVGLIRAVEKFDYA 199
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+GV P+
Sbjct: 200 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVLRVQRGLLQERGVEPTAAE 259
Query: 372 IAEYLNMSQKKVRN 385
+ L + ++VR
Sbjct: 260 VGAVLQLPPERVRE 273
>gi|219847152|ref|YP_002461585.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219541411|gb|ACL23149.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 398
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 240 SMEQLAASLRISRPE---LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ E+ A+L PE L+ I + AR+K+ +N+RLV+SIA+RY + G + DL+Q
Sbjct: 131 AAERKLATLPPDSPEAAKLRRIKEQGDEARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQ 190
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356
G +GLLR IEKFD +KG+K STY WWI+Q +SRAL + SR +RLP HL E L I++A
Sbjct: 191 EGSLGLLRAIEKFDHTKGYKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQSA 250
Query: 357 KLRLEEK-GVTPSVDRIAEYLNMSQKKVRN 385
+ +L + G P+ +A +L MS++K+R
Sbjct: 251 RRQLTQSLGREPTDTELANHLGMSEEKLRE 280
>gi|269123266|ref|YP_003305843.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptobacillus
moniliformis DSM 12112]
gi|268314592|gb|ACZ00966.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptobacillus
moniliformis DSM 12112]
Length = 379
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ SN+RLV+SIA+++ N G + DL+Q G IGL++ +EKF+S KGFK STY WW
Sbjct: 141 AKQQLMESNLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFESDKGFKFSTYATWW 200
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + RT+R+P H+ E + I+ A ++ L+E G P+ D +AE + M +KV
Sbjct: 201 IRQAITRAIADQGRTIRIPVHMIETINKIKKASRIHLQETGKEPTDDYLAEIVEMPVEKV 260
Query: 384 RNATE 388
+N E
Sbjct: 261 KNILE 265
>gi|227872476|ref|ZP_03990816.1| DNA-directed RNA polymerase sigma subunit SigA [Oribacterium sinus
F0268]
gi|227841677|gb|EEJ51967.1| DNA-directed RNA polymerase sigma subunit SigA [Oribacterium sinus
F0268]
Length = 385
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD KGFK+STY WW
Sbjct: 148 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 207
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE+L+M+++KV
Sbjct: 208 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEKV 267
Query: 384 R 384
+
Sbjct: 268 Q 268
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 115/201 (57%), Gaps = 1/201 (0%)
Query: 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECS 263
ELLT E L KI+ + + L +L P++E+ AA+ + + ++M
Sbjct: 10 ELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSR 69
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
A++++V SN+RLV+SIA++Y N+G + DLVQ G +GL R EKF+ KGFK STY W
Sbjct: 70 EAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASW 129
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKK 382
WI+Q V R++ +SRT+RLP H+H L +R + L+ E TP+ + +AE L M+ +K
Sbjct: 130 WIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQK 189
Query: 383 VRNATEAIGKVFSLDREAFPS 403
+ SL+ + S
Sbjct: 190 YNKMLRLTKRSISLETPKYQS 210
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + V K+++ L K+ L+E S A ++ ++
Sbjct: 17 VRNYLHEIGRIPLLTHEQEVLYGKQVQQMKMLLARKVELEEINPTSISQADWAQAVELTE 76
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ L++ A+ K++ +N+RLV+S+A++Y ++ DL+Q G +GL RG++KFD S
Sbjct: 77 SELEQALVQGQRAKNKMIQANLRLVVSVAKQYLRRNMELLDLIQEGSLGLERGVDKFDPS 136
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDR 371
KG++ STY YWWIRQ ++RA+ + SRT+RLP H+ E+L I ++ ++ ++ G +
Sbjct: 137 KGYRFSTYAYWWIRQAMTRAIAQQSRTIRLPVHIVEQLNKIKKHQRILAQQLGRQATPHE 196
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
+A L M +KV+ + + SLD
Sbjct: 197 LAVQLKMETEKVKRYLKLSRRTLSLD 222
>gi|335045942|ref|ZP_08538965.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 108
str. F0425]
gi|363897360|ref|ZP_09323899.1| hypothetical protein HMPREF9624_00461 [Oribacterium sp. ACB7]
gi|333759728|gb|EGL37285.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 108
str. F0425]
gi|361958857|gb|EHL12154.1| hypothetical protein HMPREF9624_00461 [Oribacterium sp. ACB7]
Length = 385
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD KGFK+STY WW
Sbjct: 148 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 207
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE+L+M+++KV
Sbjct: 208 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEKV 267
Query: 384 R 384
+
Sbjct: 268 Q 268
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 123/210 (58%), Gaps = 13/210 (6%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+ + ++ Y++ + LLT AE V L+KK++ + +D L+ + M L S
Sbjct: 85 LDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQ-------DDGM--LEHSD 135
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
RIS L+ + AR+ L+ +N+RLV+SIA++Y + G M DLVQ G IGL+R +EK
Sbjct: 136 RIS---LKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEK 192
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTP 367
FD +KG K STY WWIRQ ++RA+ + SRT+RLP H+ E + ++ +L++ P
Sbjct: 193 FDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREP 252
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IAE + ++ KVR EA SL+
Sbjct: 253 TPEEIAEAMGITASKVRRTLEASMHPLSLE 282
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 124/238 (52%), Gaps = 35/238 (14%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K+I+ GL H L K+RLG + +L
Sbjct: 30 YLNGIGKTALLTAEDEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKKDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
I+ E + AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 77 AVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 136
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNH--------------LHERLGLIRNAKLRLE 361
K STY WWIRQ ++R + + SRT+RLP H LH+RLG + + E
Sbjct: 137 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREASDEELAE 196
Query: 362 EKGVTPSVDRIAEYLNMSQKKVR------NATEAIGKVFSLDREAFPSLNGLPGETHH 413
E G+ V++I + L+ S+ V EA F D EA + N + E H
Sbjct: 197 ESGI--PVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLH 252
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
ELQ L AR++++ +N+RLV+++A++Y + G ++ DLVQ G +GL R +EKFDS++
Sbjct: 125 ELQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERAVEKFDSTR 184
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + +G T S+ +
Sbjct: 185 GFRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASNEGRTASMTDL 244
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A L++S+ VR + + SL+
Sbjct: 245 ARELSVSEDTVRQTLARVPRSVSLE 269
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++R+ E G E+L+ +R
Sbjct: 162 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RIRVTEEEG-----EKLSTQMR- 214
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 215 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 272
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 273 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 330
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 331 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 361
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268
+E ++ S+ I+ + L+ + L E+ G +P+ Q A + + L+ L +EK
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQG 328
++ SN+RLV+S+A+ Y G + DLVQ G GL+RG EK+D+SKGFK STY +WWI+Q
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQA 397
Query: 329 VSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
V ++L SRT+RLP H+ ++ A+ +L E G P + +AE +S K++
Sbjct: 398 VRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRL 453
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 123/238 (51%), Gaps = 35/238 (14%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K+I+ GL H L K+RLG + +L
Sbjct: 30 YLNGIGKTALLTAEDEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKKDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
I+ E + AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 77 AVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 136
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNH--------------LHERLGLIRNAKLRLE 361
K STY WWIRQ ++R + + SRT+RLP H LH+RLG + E
Sbjct: 137 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREATDEELAE 196
Query: 362 EKGVTPSVDRIAEYLNMSQKKVR------NATEAIGKVFSLDREAFPSLNGLPGETHH 413
E G+ V++I + L+ S+ V EA F D EA + N + E H
Sbjct: 197 ESGI--PVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLH 252
>gi|392404353|ref|YP_006440965.1| RNA polymerase, sigma 70 subunit, RpoD [Turneriella parva DSM
21527]
gi|390612307|gb|AFM13459.1| RNA polymerase, sigma 70 subunit, RpoD [Turneriella parva DSM
21527]
Length = 651
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 111/188 (59%), Gaps = 9/188 (4%)
Query: 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL 259
+V EL E V K I + ++ KLR E+ P++ L +I+R +
Sbjct: 355 IVERELGCTVEDV---KNIIKDIRNNERKLRRMEQEAGSPTLIILLWGEKIARGQ----- 406
Query: 260 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 319
E A+++L+ +N+RLV+SIA+R+ N G DL+Q G IGL+R +EKF+ KG+K ST
Sbjct: 407 REIDAAKKELINANLRLVVSIAKRFANRGMHFFDLIQEGNIGLMRAVEKFEYRKGYKFST 466
Query: 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNM 378
Y WWIRQ ++RAL E +RT+R+P+H+ E++ + R A++ L+E G PS D I E L
Sbjct: 467 YATWWIRQAITRALSEQARTIRIPSHMIEQINKVNREARIFLQETGREPSDDEIGERLGW 526
Query: 379 SQKKVRNA 386
KV+
Sbjct: 527 PVIKVKQV 534
>gi|357055285|ref|ZP_09116358.1| hypothetical protein HMPREF9467_03330 [Clostridium clostridioforme
2_1_49FAA]
gi|355383039|gb|EHG30127.1| hypothetical protein HMPREF9467_03330 [Clostridium clostridioforme
2_1_49FAA]
Length = 407
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A +LV +N+RLV+SIA+RY G DLVQ G +GL++ +EKFD +KG+++STY WW
Sbjct: 170 AGRRLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWW 229
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
++Q ++R+L + SRT+RLP H+ E + IR A+ L K G PS++ +AE +NMS+K+V
Sbjct: 230 VKQSITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEEVNMSEKRV 289
Query: 384 RNATEAIGKVFSLD 397
+A G SL+
Sbjct: 290 TELIQASGDTVSLE 303
>gi|383776221|ref|YP_005460787.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381369453|dbj|BAL86271.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 333
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL V LS+ I+ GL E +EQ +SR EL
Sbjct: 42 YLHEISRTPLLDAEREVELSRTIEAGLY-------------AEHLLEQGEERRGVSREEL 88
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ ++ E A++ + +N+RLV+SIA+RY G M DL+Q G GL+R +EKFD KGF
Sbjct: 89 ERLVTEGQRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYEKGF 148
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WW+RQ +SRA+ + RT+RLP HL E + +RN +L E G P ++IA
Sbjct: 149 KFSTYATWWVRQAISRAIAQQERTVRLPVHLVEDVNRMRNVTRQLVRELGGDPEPEQIAA 208
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L ++ ++V T SLD
Sbjct: 209 ALGVTVERVNELTRWAQDTVSLD 231
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L++
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L M+
Sbjct: 248 AEALEMT 254
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L M+
Sbjct: 248 AEALEMT 254
>gi|39998179|ref|NP_954130.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens PCA]
gi|409913534|ref|YP_006891999.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens
KN400]
gi|39985125|gb|AAR36480.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens PCA]
gi|298507117|gb|ADI85840.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens
KN400]
Length = 577
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 15/177 (8%)
Query: 243 QLAASLR-ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
+L+ +LR I R E +S LA+ +LV +N+RLV+SIA++Y N G DL+Q G IG
Sbjct: 322 ELSDALRAIDRGEAKS-----KLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIG 376
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRL 360
L++ ++KF+ +G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ +
Sbjct: 377 LMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLV 436
Query: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+E G PS + IAE +N+ KVR KV + +E SL GE H G
Sbjct: 437 QEIGREPSPEEIAERMNLPLDKVR-------KVLKIAKEPI-SLETPIGEEEDSHLG 485
>gi|357391472|ref|YP_004906313.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311897949|dbj|BAJ30357.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 323
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 14/191 (7%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL AE V LS +I+ G+ H L E L +S EL
Sbjct: 32 YLDEIARTPLLDAAEEVELSLRIEAGV-FAQHLLDEGEGLDG------------VSTEEL 78
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++I + A++ + SN+RLV+++A+RY G + DL+Q G GL+R +EKFD SKGF
Sbjct: 79 RAIAEDAERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYSKGF 138
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDRIAE 374
K STY WWIRQ ++R++ + SRT+RLP HL E LG IR + + +E G P IA
Sbjct: 139 KFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRKVQREKAKELGREPDPAEIAA 198
Query: 375 YLNMSQKKVRN 385
L+ ++++V++
Sbjct: 199 ELDTTEQRVKD 209
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 124/209 (59%), Gaps = 22/209 (10%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M +P+L + ++ Y++ + LL E ++L+ K++ LSL L LK+ +
Sbjct: 1 MATPKL--DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSL----LELKK--------D 46
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
LAA+ Q I+ + A+++++ +N+RLV+SIA+RY G + DL+Q G +GL
Sbjct: 47 NLAAAE-------QKIIEQGQRAKQQMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGL 99
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE- 361
+R +EKFD SKG+K STY YWW+RQ ++RAL E SRT+RLP H+ E L ++ + L
Sbjct: 100 IRAVEKFDPSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNHLKKSVRELTG 159
Query: 362 EKGVTPSVDRIAEYLNMSQKKVRNATEAI 390
E G P+ +A+ + + +K++ A+
Sbjct: 160 ELGRKPTEQEVAQRMEIPLEKLQEIRHAV 188
>gi|254386169|ref|ZP_05001481.1| RNA polymerase sigma subunit [Streptomyces sp. Mg1]
gi|194345026|gb|EDX25992.1| RNA polymerase sigma subunit [Streptomyces sp. Mg1]
Length = 325
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 22/222 (9%)
Query: 168 NKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLS--- 223
+++ ++ S R+ + E+ L G Y+ + LL A+ V LS+ I+ G+
Sbjct: 3 TRAVARRQSSSSARA-VGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYARQ 61
Query: 224 -LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQ 282
LD ER G P+ R EL+++ E A+E + SN+RLV+++A+
Sbjct: 62 ILDGEA----EREGEAPA-----------REELEALAAEGERAKEVFIRSNLRLVVAVAR 106
Query: 283 RYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRL 342
RY G + DL+Q G GL+R +EKFD +KGFK STY WWIRQ ++R++ + SRT+RL
Sbjct: 107 RYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRL 166
Query: 343 PNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
P HL E LG IR + E G P IA L+ + K+V
Sbjct: 167 PVHLVEELGRIRRVQREFNREHGRDPEHTEIAAELDTTAKRV 208
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 119/210 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
K +++ + E LT E +L +++ + L++ + RL+ + G EP++E+ A ++ +S
Sbjct: 250 FKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSC 309
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQS + REK+ SN RLV+ +A++Y G D+ DLVQ G GL++ EKF+ S
Sbjct: 310 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 369
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRI 372
KG + TY YWWIRQ + +++ ++SR +RLP ++ L + A+L +G P+ + +
Sbjct: 370 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYALLKKVGKARLECILEGEQPTNENV 429
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLDREAFP 402
A ++ +K+ K SL +P
Sbjct: 430 ARRAGITIEKLAKLKAKTRKSRSLQDRVWP 459
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L++
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L M+
Sbjct: 248 AEALEMT 254
>gi|357413573|ref|YP_004925309.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010942|gb|ADW05792.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 358
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 118/192 (61%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL+ A+ V L+++++ GL + ERL P + A
Sbjct: 62 FRQYLREIGRIPLLSAADEVELARRVEAGLFAE-------ERLAGTPDPDSGLAV----- 109
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD +
Sbjct: 110 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 168
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +
Sbjct: 169 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPAPEE 228
Query: 372 IAEYLNMSQKKV 383
+A L+++ ++V
Sbjct: 229 VAAQLDLTPERV 240
>gi|307243281|ref|ZP_07525452.1| RNA polymerase sigma factor RpoD [Peptostreptococcus stomatis DSM
17678]
gi|306493409|gb|EFM65391.1| RNA polymerase sigma factor RpoD [Peptostreptococcus stomatis DSM
17678]
Length = 384
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 111/172 (64%), Gaps = 14/172 (8%)
Query: 218 IKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISRPELQSILMECSLAREKLVMSN 273
+ G+S+DD ++ LKE +G P + E++ + R++ + A++KLV +N
Sbjct: 105 VPKGISIDDPVRMYLKE-IGKIPLLKPHEEVEYAKRMAEGD--------EFAKQKLVEAN 155
Query: 274 VRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAL 333
+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG+K STY WWIRQ ++RA+
Sbjct: 156 LRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYKKGYKFSTYATWWIRQAITRAI 215
Query: 334 VENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
+ +RT+R+P H+ E + LIR ++ L+E G P D IA+ +NM+++KVR
Sbjct: 216 ADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPDEIAKEMNMTEEKVR 267
>gi|312195623|ref|YP_004015684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226959|gb|ADP79814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 418
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 121/208 (58%), Gaps = 14/208 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+ + LLT E V L+K+++ GL E+L E L LR
Sbjct: 120 DSVRQYLSQIGRVRLLTAEEEVDLAKRVEAGLFA-------AEKLAAENG---LVGDLR- 168
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL + + +A+ +LV +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD
Sbjct: 169 --RELVWVERDGEIAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAVEKFD 226
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+
Sbjct: 227 YTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTP 286
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ IA+ ++++ KVR + + SL+
Sbjct: 287 EEIAKEMDLTPDKVREIQKVAQEPISLE 314
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 111/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L M+
Sbjct: 248 AEALEMT 254
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 106/168 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ ++L + + L+E L E + E+ A + +++
Sbjct: 20 VRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ L A+ K++ +N+RLV++IA+ + DL+Q G +GL RG+EKFD +
Sbjct: 80 KQLQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQEGSLGLERGVEKFDPT 139
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
KG+K STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + +L
Sbjct: 140 KGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQL 187
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 130/230 (56%), Gaps = 19/230 (8%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I++ ++ Y+K + LLT + + L++ ++ G + L + + +L+ +
Sbjct: 218 IEDPVRMYLKEIGKVPLLTADQEIDLAQAMEAGADAEKE-------LADDKDVNKLSDA- 269
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
+ EL +I+ E A+++L +N+RLV+SIA+RY G DL+Q G +GL++ +EK
Sbjct: 270 --RKKELNAIIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEK 327
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ L+E G P
Sbjct: 328 FDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 387
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+ +A+ +NM ++VR ++ + +E SL GE H G
Sbjct: 388 LPEEVAKEMNMPVERVR-------EILKISQEPV-SLETPIGEEEDSHLG 429
>gi|303233350|ref|ZP_07320019.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
gi|302480479|gb|EFL43570.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
Length = 441
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 24/205 (11%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT + V L+ KI+ G + EQL +
Sbjct: 135 LTGDPVRMYLKEIGKVDLLTADDEVHLAMKIEAG----------------NKATEQLEKA 178
Query: 248 ----LRISRPELQSILMECSL---AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
+ +SR E++ ++ E + A++ L +N+RL +SIA+RY G DL+Q G +
Sbjct: 179 EKGEIELSRSEMRRLMREEQVGLDAKQALTSANLRLTVSIAKRYVGRGMLFLDLIQEGNL 238
Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLR 359
GL+R +EKFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R +
Sbjct: 239 GLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQL 298
Query: 360 LEEKGVTPSVDRIAEYLNMSQKKVR 384
L+E G PS + I + +NMS K+R
Sbjct: 299 LQELGRDPSPEEIGKEMNMSPDKIR 323
>gi|50954703|ref|YP_061991.1| RNA polymerase sigma factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951185|gb|AAT88886.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 440
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 116/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D RL P+M + + R
Sbjct: 144 VKDYLKQIGKVPLLNAAEEVELAMRIEAGLFAED-------RLANTPNMPR-----ELER 191
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 192 -ELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYT 250
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 251 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 310
Query: 372 IAEYLNMSQKKV 383
+++ L+M+ +KV
Sbjct: 311 LSKELDMTPEKV 322
>gi|256396128|ref|YP_003117692.1| RpoD subfamily RNA polymerase sigma-70 subunit [Catenulispora
acidiphila DSM 44928]
gi|256362354|gb|ACU75851.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Catenulispora
acidiphila DSM 44928]
Length = 390
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 22/226 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL V L++ ++ GL + KL + L +P + R
Sbjct: 94 FRQYLREIGRVPLLNAVLEVELAQAVEAGL-FAEEKLTFQTHL--KPQL----------R 140
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL +++E A+ +L+ +N+RLV+SIA+RY G + DLVQ G +GL+R +EKFD +
Sbjct: 141 RELAILVLEGQAAKRRLIEANLRLVVSIAKRYLGRGMSILDLVQEGNLGLIRAVEKFDYT 200
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E GV P+ D
Sbjct: 201 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELMNRVVRLQRRLLQENGVEPTPDD 260
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IAE L + A E + +V L +E SL+ GE + G
Sbjct: 261 IAEVLGV-------AVERVVEVLRLAQEPV-SLHAPVGEEDDVALG 298
>gi|116748652|ref|YP_845339.1| RpoD family RNA polymerase sigma factor [Syntrophobacter
fumaroxidans MPOB]
gi|116697716|gb|ABK16904.1| RNA polymerase, sigma 70 subunit, RpoD family [Syntrophobacter
fumaroxidans MPOB]
Length = 599
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 110/186 (59%), Gaps = 11/186 (5%)
Query: 233 ERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA 292
E L E M+ + SLR+ ++ L+ LA+ +L+ +N+RLV+SIA++Y N G
Sbjct: 331 EELEIEAKMD--SRSLRLILRRVEDGLIRAKLAKSELIEANLRLVVSIAKKYTNRGLQFL 388
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG- 351
DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++RA+ + +RT+R+P H+ E +
Sbjct: 389 DLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINK 448
Query: 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGET 411
LIR ++ ++E G P+ + IAE + +KVR KV + +E SL GE
Sbjct: 449 LIRTSRYLVQELGREPTPEEIAEKMEFPVEKVR-------KVLKIAKEPI-SLETPIGEE 500
Query: 412 HHIHCG 417
H G
Sbjct: 501 EDSHLG 506
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 119/195 (61%), Gaps = 2/195 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E + L+ +IK + +++ +L+ L P+ +L +L + S +L ++L +
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+ K++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD +KG+K STY YW
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAVGLNRATEKFDPNKGYKFSTYAYW 174
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKK 382
WIRQ ++R + ++RT+RLP H+ E+L ++ A+ L+++ P + IA + +S +
Sbjct: 175 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPKEEEIATEMEISPLQ 234
Query: 383 VRNATEAIGKVFSLD 397
+R E + SL+
Sbjct: 235 LRYLLELKRQSLSLN 249
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 124/193 (64%), Gaps = 1/193 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G + +LLT E L +I+ + L++ K RL+ L EP++ + A ++ +S
Sbjct: 260 LRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSC 319
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
LQS L + +R+KL+ +N+R+V+ IA++Y G ++ DL+Q G +GL+ +EKF +
Sbjct: 320 QVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPN 379
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK-LRLEEKGVTPSVDR 371
G + ++Y YWWIRQ V +A+ ++SRT+RLP +++ LG ++ AK L ++E P+ +
Sbjct: 380 AGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEE 439
Query: 372 IAEYLNMSQKKVR 384
IAE + ++ +K++
Sbjct: 440 IAERVGITIEKLQ 452
>gi|328955627|ref|YP_004372960.1| RNA polymerase sigma-70 subunit RpoD [Coriobacterium glomerans PW2]
gi|328455951|gb|AEB07145.1| RNA polymerase, sigma 70 subunit, RpoD [Coriobacterium glomerans
PW2]
Length = 442
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 122/199 (61%), Gaps = 10/199 (5%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT A+ V L+ KI+ GL + KL +R E ++ + A
Sbjct: 136 LTGDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAAE-KLESSDR--GEIALTR-ADM 191
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
R+SR ++ + +E A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R +E
Sbjct: 192 RRLSR--IEQVGLE---AKQALISANLRLVVSIAKRYVGRGMHFLDLIQEGNLGLIRAVE 246
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G
Sbjct: 247 KFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGRD 306
Query: 367 PSVDRIAEYLNMSQKKVRN 385
P+ + I + MS +VR
Sbjct: 307 PTPEEIGAEMEMSADRVRE 325
>gi|298346920|ref|YP_003719607.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
gi|298236981|gb|ADI68113.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
Length = 563
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V LSK+I+ GL +H L+ K+ +
Sbjct: 266 VKDYLKQIGKVALLNAEQEVDLSKRIEAGL-YAEHLLKTKQETMTPKQIR---------- 314
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + +A+ L+ +N+RLV+++A++Y G DL+Q G +GL+R +EKFD S
Sbjct: 315 -ELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 373
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 374 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPDE 433
Query: 372 IAEYLNMSQKKV 383
+A+ L M+ +KV
Sbjct: 434 LAQELEMTPEKV 445
>gi|160941150|ref|ZP_02088487.1| hypothetical protein CLOBOL_06043 [Clostridium bolteae ATCC
BAA-613]
gi|158435711|gb|EDP13478.1| hypothetical protein CLOBOL_06043 [Clostridium bolteae ATCC
BAA-613]
Length = 406
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A KLV +N+RLV+SIA+RY G DLVQ G +GL++ +EKFD +KG+++STY WW
Sbjct: 169 AGRKLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWW 228
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
++Q ++R+L + SRT+RLP H+ E + IR A+ L K G PS++ +AE +NMS K+V
Sbjct: 229 VKQSITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRV 288
Query: 384 RNATEAIGKVFSLD 397
+A G SL+
Sbjct: 289 AELIQASGDTVSLE 302
>gi|315655467|ref|ZP_07908366.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
gi|315490122|gb|EFU79748.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
Length = 553
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V LSK+I+ GL +H L+ K+ +
Sbjct: 256 VKDYLKQIGKVALLNAEQEVDLSKRIEAGL-YAEHLLKTKQETMTPKQIR---------- 304
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + +A+ L+ +N+RLV+++A++Y G DL+Q G +GL+R +EKFD S
Sbjct: 305 -ELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 363
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 364 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPDE 423
Query: 372 IAEYLNMSQKKV 383
+A+ L M+ +KV
Sbjct: 424 LAQELEMTPEKV 435
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
EL++ L A++ ++ +N+RLV+++A++Y G ++ DLVQ G +GL R +EKFD ++
Sbjct: 216 ELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTR 275
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRI 372
GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ + +G S+ +
Sbjct: 276 GFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADL 335
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A L +S+ VR + + SLD
Sbjct: 336 ARALKLSEDTVRQTLARVPRSVSLD 360
>gi|304389369|ref|ZP_07371334.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304327487|gb|EFL94720.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 564
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V LSK+I+ GL +H L+ K+ +
Sbjct: 267 VKDYLKQIGKVALLNAEQEVDLSKRIEAGL-YAEHLLKTKQETMTPKQIR---------- 315
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + +A+ L+ +N+RLV+++A++Y G DL+Q G +GL+R +EKFD S
Sbjct: 316 -ELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 374
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 375 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPDE 434
Query: 372 IAEYLNMSQKKV 383
+A+ L M+ +KV
Sbjct: 435 LAQELEMTPEKV 446
>gi|434399422|ref|YP_007133426.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270519|gb|AFZ36460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 291
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
PE Q I+ + A++++ +N+RLV+SIA++Y N G + DL+Q G +GL+R IEKFD
Sbjct: 44 PEEQEIVRKGQWAKQQMTQANLRLVVSIAKKYQNRGLSLLDLIQEGSLGLIRAIEKFDPD 103
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDR 371
KG+K STY YWWIRQ V+RA+ SR +RLP H+ + L I+ +L +E G P+
Sbjct: 104 KGYKFSTYAYWWIRQAVTRAIANQSRAIRLPIHIIQDLNKIKKITRQLSQELGRQPTERE 163
Query: 372 IAEYLNMSQKKVR 384
IA + +S KK+R
Sbjct: 164 IAREMKLSLKKLR 176
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 15/211 (7%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + +LLT E V LS I+ L L+ + L E GC+P+ Q AA+
Sbjct: 241 GSLWKLTGRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKT 300
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L+ L ++ ++V SNVRLV+SIA+ ++ G ++ DL+Q G+ GL+RG EKFD+SKG
Sbjct: 301 LRKRLAHGIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKG 360
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE--------KGVT 366
F+ STY +WWI+Q + +++ E ++ RLP H+ E A R++E
Sbjct: 361 FRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVE-------ASYRVKECTRRLRRTLQRR 413
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
PS + IA + M K+V A SLD
Sbjct: 414 PSNEEIAVDIGMPVKRVEAAVNLPKYSVSLD 444
>gi|359397321|ref|ZP_09190352.1| RNA polymerase primary sigma factor [Novosphingobium
pentaromativorans US6-1]
gi|357601275|gb|EHJ62963.1| RNA polymerase primary sigma factor [Novosphingobium
pentaromativorans US6-1]
Length = 675
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 125/212 (58%), Gaps = 18/212 (8%)
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL-------MECSLAR 266
+S+K K + +++ ER+ E S +AA+ ++ PE + I+ E +A+
Sbjct: 381 MSRKDKKWAAFAENEADSVERIRSEVS--DIAAATGMALPEFRRIVNMVQKGEREARIAK 438
Query: 267 EKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 326
+++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WWIR
Sbjct: 439 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 498
Query: 327 QGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385
Q ++R++ + +RT+R+P H+ E + L+R ++ L E+G P+ + +AE L+M +KVR
Sbjct: 499 QAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR- 557
Query: 386 ATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KV + +E SL G+ H G
Sbjct: 558 ------KVMKIAKEPI-SLETPIGDEEDSHLG 582
>gi|315656627|ref|ZP_07909514.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315492582|gb|EFU82186.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 564
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V LSK+I+ GL +H L+ K+ +
Sbjct: 267 VKDYLKQIGKVALLNAEQEVDLSKRIEAGL-YAEHLLKTKQETMTPKQIR---------- 315
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + +A+ L+ +N+RLV+++A++Y G DL+Q G +GL+R +EKFD S
Sbjct: 316 -ELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 374
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 375 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPDE 434
Query: 372 IAEYLNMSQKKV 383
+A+ L M+ +KV
Sbjct: 435 LAQELEMTPEKV 446
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 128/211 (60%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 137 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR- 189
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 190 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 247
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ L++ G P
Sbjct: 248 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQREL--LQDLGREP 305
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 306 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 336
>gi|334141892|ref|YP_004535099.1| RNA polymerase primary sigma factor [Novosphingobium sp. PP1Y]
gi|333939923|emb|CCA93281.1| RNA polymerase primary sigma factor [Novosphingobium sp. PP1Y]
Length = 677
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 125/212 (58%), Gaps = 18/212 (8%)
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL-------MECSLAR 266
+S+K K + +++ ER+ E S +AA+ ++ PE + I+ E +A+
Sbjct: 383 MSRKDKKWAAFAENEADSVERIRSEIS--DIAAATGMALPEFRRIVNMVQKGEREARIAK 440
Query: 267 EKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 326
+++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WWIR
Sbjct: 441 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 500
Query: 327 QGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385
Q ++R++ + +RT+R+P H+ E + L+R ++ L E+G P+ + +AE L+M +KVR
Sbjct: 501 QAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR- 559
Query: 386 ATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KV + +E SL G+ H G
Sbjct: 560 ------KVMKIAKEPI-SLETPIGDEEDSHLG 584
>gi|307155201|ref|YP_003890585.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306985429|gb|ADN17310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 295
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
PE + I+ + A+ K++ +N+RLV+SIA++Y G DL+Q G IGL+RG+EKFD S
Sbjct: 48 PEEKRIIQQGKRAKRKMINANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPS 107
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDR 371
KG+K STY YWWIRQ ++RA+ + SRT+RLP+HL E L ++ +L E G P+
Sbjct: 108 KGYKFSTYAYWWIRQAMTRAIADQSRTIRLPSHLTESLNKLKRVTRQLTGELGRRPTEQE 167
Query: 372 IAEYLNMS 379
+A L +S
Sbjct: 168 LANALELS 175
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 124/193 (64%), Gaps = 1/193 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G + +LLT E L +I+ + L++ K RL+ L EP++ + A ++ +S
Sbjct: 249 LRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSC 308
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
LQS L + +R+KL+ +N+R+V+ IA++Y G ++ DL+Q G +GL+ +EKF +
Sbjct: 309 QVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPN 368
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK-LRLEEKGVTPSVDR 371
G + ++Y YWWIRQ V +A+ ++SRT+RLP +++ LG ++ AK L ++E P+ +
Sbjct: 369 AGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEE 428
Query: 372 IAEYLNMSQKKVR 384
IAE + ++ +K++
Sbjct: 429 IAERVGITIEKLQ 441
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 120/210 (57%), Gaps = 1/210 (0%)
Query: 188 LIQNRL-KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
LIQ L + +++ + E LT E ++ +I+ + L+ + L+ + G EP++E+ A
Sbjct: 223 LIQTSLFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQ 282
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
++ +S ELQS + REK+ SN RLV+ +A++Y+ G D+ DLVQ G GL++
Sbjct: 283 AVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTF 342
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVT 366
EKF+ SKG + TY YWWIRQ + +++ +NSR +RLP ++ L + A++ G
Sbjct: 343 EKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGEQ 402
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396
P+ + +A ++ +K+ KV S+
Sbjct: 403 PTNEVVARRAGITIEKLAKLRAKTRKVRSM 432
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 2/189 (1%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRISRPE 254
Y+ +E LL+ E V L+ +++ ++L + LK LG EPS + A A+ +
Sbjct: 8 YLPERAAEPLLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGA 67
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
L++ + RE+L+ N+RLV+S+A+RY + G DL Q G GL + ++FD SKG
Sbjct: 68 LRTRMGHMKACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLAKACDRFDPSKG 127
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
F+ STY WWIRQ V+ A+ SRT+RLP H+HE+L ++ K+ LE++ G + D IA
Sbjct: 128 FRFSTYAVWWIRQAVAHAVAHQSRTIRLPTHVHEKLRRMKKHKVALEKQTGRDATDDEIA 187
Query: 374 EYLNMSQKK 382
+++ K
Sbjct: 188 REMSLDADK 196
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + RL++ E + E+LA +R
Sbjct: 165 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE---RLRQ---AEEAEERLAMQMR- 217
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 218 --RDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 275
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 276 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 333
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 334 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 364
>gi|451944378|ref|YP_007465014.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451903765|gb|AGF72652.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 517
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 126/211 (59%), Gaps = 8/211 (3%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL D +++E +L +L+
Sbjct: 209 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYADYRMQQMEEAFAAGDKDAKLTPALK- 267
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L++I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 268 --RDLRAISRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 325
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
SKG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 326 YSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 383
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ +A+ ++++++KV + + SLD+
Sbjct: 384 TPQELAKEMDITEEKVLEIQQYAREPISLDQ 414
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 118/194 (60%), Gaps = 17/194 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + KL+ E S+ ++
Sbjct: 161 VKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-QKLKRDE-------------SIVRTK 206
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
P EL I+ + A++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 207 PGRELAMIVEDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 266
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
SKG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 267 YSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 326
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 327 EELAKELDMTPEKV 340
>gi|302535003|ref|ZP_07287345.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
gi|302443898|gb|EFL15714.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
Length = 325
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGL---SLDDHKLRLKERLGCEPSME 242
E++ L G Y+ + LL A V LS+ I+ G+ + D ++ ER G P+
Sbjct: 21 EIVDRDLVGMYLDEIARTPLLDAAREVELSQIIEAGVYARQILDGEI---ERDGELPA-- 75
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
R EL+++ E A+E + SN+RLV+++A+RY G + DL+Q G GL
Sbjct: 76 ---------REELEALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGL 126
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-E 361
+R +EKFD +KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG IR +
Sbjct: 127 VRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRIQREFNR 186
Query: 362 EKGVTPSVDRIAEYLNMSQKKVRN----ATEAIGKVFSLDREAFPSLNGLPGETHHI 414
E G P IA L+ ++K+V + A + + S+D E L +T I
Sbjct: 187 ENGRDPEHAEIAAALDSTEKRVGDVLDWARDPVSLNMSVDDEGDTQFGDLLEDTSAI 243
>gi|298247391|ref|ZP_06971196.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297550050|gb|EFH83916.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 385
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 20/208 (9%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ L+ Y++ + LLT + V+L+++I+ G +EQ A L
Sbjct: 93 DTLETYLREMGRVPLLTSEQEVQLAQQIERG------------------KLEQERARLLK 134
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
PE +I+ AR++L +N+RLV+SIA++Y G +ADL+Q G GL+ +EKFD
Sbjct: 135 VPPE-HAIMDSAQNARDRLTEANLRLVVSIARKYMGRGMALADLIQEGNAGLMLAVEKFD 193
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
++GFK STY WWIRQ ++RA+ +RT+RLP H HE + L R + +E G PS
Sbjct: 194 YTRGFKFSTYATWWIRQAINRAIANQARTIRLPVHFHEAVNRLHRTSSQLFQELGREPSA 253
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ IAE +++S V + EA + SL+
Sbjct: 254 EEIAERMHISVDTVYDILEAGKQPISLE 281
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 115/194 (59%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LLT E V L+K+I+ GL ++ +L E P +++
Sbjct: 89 DPVKDYLKQIGKVSLLTADEEVSLAKRIEAGLFAEE---KLSESGDLAPKLKR------- 138
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ ++ + A++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 139 ---ELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFD 195
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 196 YVKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLSRVQRQLLQDLGREPTP 255
Query: 370 DRIAEYLNMSQKKV 383
D + L+M ++V
Sbjct: 256 DELGRELDMPPERV 269
>gi|332670669|ref|YP_004453677.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cellulomonas fimi
ATCC 484]
gi|332339707|gb|AEE46290.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulomonas fimi
ATCC 484]
Length = 538
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ RL + EP + R
Sbjct: 242 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---RLNAGVAMEPKL----------R 288
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 289 RELEWIAGDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 348
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 349 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 408
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 409 LAKELDMTPEKV 420
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT E V L+K+I+ GL ++ +L E P +++
Sbjct: 91 VKDYLKQIGKVSLLTADEEVSLAKRIEAGLFAEE---KLSESGDLAPKLKR--------- 138
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ ++ + A++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 139 -ELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYV 197
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 198 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLSRVQRQLLQDLGREPTPDE 257
Query: 372 IAEYLNMSQKKV 383
+ L+M ++V
Sbjct: 258 LGRELDMPPERV 269
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 116/192 (60%), Gaps = 4/192 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ RL + G + +A R
Sbjct: 241 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---RLSKEFGEGWDKTKASAEERRLY 297
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+LQ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 298 RDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 357
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 358 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 417
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 418 LAKELDMTPEKV 429
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+ + ++ Y++ + LLT E + L+++++ G + ERL Q
Sbjct: 106 VDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQAN-------ERL-------QNGDYT 151
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
+ R +L + E ARE+L+ +N+RLV+SIA++Y G + DL+Q G IGL+R EK
Sbjct: 152 PVERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEK 211
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTP 367
FD KG+K STY WWIRQ ++R + + SRT+RLP H+ E + + R+++ G P
Sbjct: 212 FDYRKGYKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDP 271
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFP 402
+ D IA L + +KVR EA + SL+ P
Sbjct: 272 TPDEIALELGIPVEKVRRVLEAARQTISLETPIGP 306
>gi|40353309|gb|AAR84418.1| essential primary sigma 70 factor [Frankia sp. D11]
gi|40353317|gb|AAR84422.1| essential primary sigma 70 factor [Frankia sp. HR2714]
gi|40353319|gb|AAR84423.1| essential primary sigma 70 factor [Frankia sp. Flec]
Length = 255
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 111/181 (61%), Gaps = 21/181 (11%)
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP----ELQSILMECSLA 265
E V L+K+I+ GL + E+LA + + + P +L++I + +A
Sbjct: 3 EEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQMRRDLEAIERDGQIA 46
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +KG+K STY WWI
Sbjct: 47 KRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWI 106
Query: 326 RQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
RQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS + IA+ ++++ KVR
Sbjct: 107 RQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEEIAKEMDLTPDKVR 166
Query: 385 N 385
Sbjct: 167 E 167
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 21/234 (8%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + ++ Y+K + LL E V+L++ + G D K R+ E E E + +
Sbjct: 132 IDDPVRMYLKEIGKVNLLNPDEEVQLAQDMGAG---DAAKARMAEIEAAEKRGEPIVLT- 187
Query: 249 RISRPE----LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
PE L+ + A+++L +N+RLV+SIA+RY G DL+Q G +GL++
Sbjct: 188 ----PEEEKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 243
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + +IR ++ L+E
Sbjct: 244 AVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQEL 303
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
G PS + IAE +NM KVR ++ + +E SL GE H G
Sbjct: 304 GHDPSPEEIAEEMNMPVDKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 349
>gi|40353313|gb|AAR84420.1| essential primary sigma 70 factor [Frankia sp. ACN1ag]
Length = 255
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 111/181 (61%), Gaps = 21/181 (11%)
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP----ELQSILMECSLA 265
E V L+K+I+ GL + E+LA + + + P +L++I + +A
Sbjct: 3 EEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQMRRDLEAIERDGQIA 46
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +KG+K STY WWI
Sbjct: 47 KRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWI 106
Query: 326 RQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
RQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS + IA+ ++++ KVR
Sbjct: 107 RQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEEIAKEMDLTPDKVR 166
Query: 385 N 385
Sbjct: 167 E 167
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 122/210 (58%), Gaps = 8/210 (3%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM---EQLAASLRISR 252
Y+K + LL E + L K++K ++ + K E L E S E+ A + IS
Sbjct: 11 YLKRIGQIPLLKPDEEIELGKQVKRMMTCWEKK----ENLQVEKSYITEEEWAKEIGISV 66
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQ IL A+EK++ +N+RLV++++++Y G + DLV G +GL+R +EKF+
Sbjct: 67 RELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLIRAVEKFEYD 126
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG+K STY Y WIRQ + RA+ + RT+R+P H++E + ++ +L + +K G + +V
Sbjct: 127 KGYKFSTYAYHWIRQALVRAICDKGRTIRVPVHINEEISKLKKVQLEIRQKYGRSATVRE 186
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAF 401
++E L +S +K+R + SLD++
Sbjct: 187 LSERLEISPEKIRVLRSVNNPMLSLDQKVL 216
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT E V L+K I+ GL +D KL K+ G E PEL
Sbjct: 76 YLREIGKVPLLTAEEEVELAKAIEAGLFAED-KLCEKKAAGIEC-------------PEL 121
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ ++ E A+++L+ +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +KG+
Sbjct: 122 EDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGY 181
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAE 374
K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + ++ G P+ + IA+
Sbjct: 182 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLHQDLGREPTPEEIAK 241
Query: 375 YLNMSQKKV 383
+++ ++V
Sbjct: 242 EMDLPVERV 250
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 112/191 (58%), Gaps = 23/191 (12%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQ----------------------SILMECSLARE 267
RL +LG PS E+ A++ I+ EL+ ++ + + A+E
Sbjct: 126 RLTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKE 185
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R ++KFD +KG++ STY YWWIRQ
Sbjct: 186 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVDKFDPTKGYRFSTYAYWWIRQ 245
Query: 328 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNA 386
G++RA+ SR +RLP H+ E+L I+ + L E G P ++ +A+ L+M+ +++
Sbjct: 246 GITRAIATQSRNIRLPVHITEKLNKIKKVQRELSIETGRPPRLEEVAKALDMTLVQLQEV 305
Query: 387 TEAIGKVFSLD 397
+ + SLD
Sbjct: 306 LMRVPRSVSLD 316
>gi|72162538|ref|YP_290195.1| RNA polymerase sigma factor [Thermobifida fusca YX]
gi|71916270|gb|AAZ56172.1| carbamoyl-phosphate synthase L chain, ATP-binding [Thermobifida
fusca YX]
Length = 616
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 117/192 (60%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + KL K G E + E+ R
Sbjct: 319 VKDYLKQIGKVPLLNAEQEVELAKRIEAGL-FAEEKLSKK---GHELTPEE--------R 366
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 367 EELEWIAEDGKRAKKHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 426
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 427 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 486
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 487 LAKELDMTPEKV 498
>gi|404495252|ref|YP_006719358.1| RNA polymerase sigma-70 factor RpoD [Geobacter metallireducens
GS-15]
gi|418065719|ref|ZP_12703090.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
metallireducens RCH3]
gi|78192871|gb|ABB30638.1| RNA polymerase sigma-70 factor RpoD [Geobacter metallireducens
GS-15]
gi|373561799|gb|EHP88025.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
metallireducens RCH3]
Length = 579
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 9/157 (5%)
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
LA+ +LV +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 339 AKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYA 398
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 380
WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E G PS + IAE +N+
Sbjct: 399 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPL 458
Query: 381 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KVR KV + +E SL GE H G
Sbjct: 459 DKVR-------KVLKIAKEPI-SLETPIGEEEDSHLG 487
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 117/203 (57%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT AE V L+K+I+ G+ H L G P AS R R EL
Sbjct: 37 YLNGIGKTALLTAAEEVELAKRIEAGV-FAQHMLET----GSGP------ASTR--REEL 83
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 84 RALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGF 143
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + RT+RLP HL E++ + K L ++ G + D +A+
Sbjct: 144 KFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATTDELAK 203
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++ KV + + SLD
Sbjct: 204 ESGLTPAKVSDLLDHARDPVSLD 226
>gi|302543058|ref|ZP_07295400.1| RNA polymerase principal sigma factor HrdD [Streptomyces
hygroscopicus ATCC 53653]
gi|302460676|gb|EFL23769.1| RNA polymerase principal sigma factor HrdD [Streptomyces
himastatinicus ATCC 53653]
Length = 333
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
Query: 175 NGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+G+ +R+ E+ L G Y+ + LL A+ V LS+ ++ G+ ++
Sbjct: 17 DGANSVRAT-GGEIADRDLVGMYLDEIARTPLLDAAKEVELSQAVEAGVYA-------QQ 68
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
L E A + SR EL++I E + A++ + SN+RLV+++A+RY G + D
Sbjct: 69 ILDGEAEDTGAAGA---SREELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLD 125
Query: 294 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353
L+Q G GL+R +EKFD +KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG I
Sbjct: 126 LIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRI 185
Query: 354 RNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
R + E G P IAE L + ++V +
Sbjct: 186 RRVQREFNREHGREPEHMEIAEELGSTPERVSD 218
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG + +L
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q+++ + AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 73 QAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 132
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K + + G + + +AE
Sbjct: 133 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAE 192
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + E SLD
Sbjct: 193 ESGIPVEKINDLLEHSRDPVSLD 215
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L++
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
A+ L M+
Sbjct: 248 AQALEMT 254
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 120/201 (59%), Gaps = 16/201 (7%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT A+ V L+ KI+ GL +KL + A
Sbjct: 137 LTGDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAS-NKLEAAD-----------AGE 184
Query: 248 LRISRPELQSI--LMECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
+ ++R E++ + + + L A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R
Sbjct: 185 IELTRAEMRRLTRVEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIR 244
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L++
Sbjct: 245 AVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDL 304
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + I ++MS +VR
Sbjct: 305 GRDPTPEEIGAEMDMSADRVR 325
>gi|319948428|ref|ZP_08022566.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
gi|319437910|gb|EFV92892.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
Length = 322
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 13/168 (7%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V LSK+I+ GL H L K+RLG P+ + +L
Sbjct: 29 YLNGIGKTALLNAEDEVELSKRIEAGLYAK-HLLETKKRLG--PA----------KKADL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++I+ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 76 KTIVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 135
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L ++
Sbjct: 136 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 183
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 124/209 (59%), Gaps = 20/209 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
GS+Q +P+L + Y++ + LL+ A+ V L+++++ G+ K
Sbjct: 90 GSEQA-GAAAPDLFRQ----YLREIGRIPLLSAADEVELARRVEAGVFAA-----AKLAG 139
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
GC A ++R +L+ +++ A+ +L+ +N+RLV+S+A+RY G M DLV
Sbjct: 140 GC--------ADAGLAR-DLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLV 190
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIR 354
Q G +GL+R +EKFD ++GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++R
Sbjct: 191 QEGNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVR 250
Query: 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+ L+E G P+ + + E L +S +KV
Sbjct: 251 TQRALLQEAGREPAAEEVGERLGLSAEKV 279
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 18/196 (9%)
Query: 191 NRLKGYVKGVVSEEL--LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
NRL + V+ EE+ LT E VR +D L+ ++G P + A
Sbjct: 354 NRLSLVEEKVICEEIARLTRLEAVR-----------ED----LRRKMGRLPRENEWAWEA 398
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
+S EL+ L++ A+ ++V +N+RLV+ A+RY N G DLVQ G IGL+RG+EK
Sbjct: 399 NLSVSELRGKLIKGRRAKNRMVAANLRLVICFAKRYRNRGVAFQDLVQEGSIGLIRGVEK 458
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTP 367
+D+ +GF+ STY WWIRQG+ +AL+E SR RLP H++E + IR L L G P
Sbjct: 459 YDAHRGFRFSTYASWWIRQGIHKALLECSRMFRLPVHVNEMIKDIRKCSLELMTSLGREP 518
Query: 368 SVDRIAEYLNMSQKKV 383
+ IA + M ++KV
Sbjct: 519 TKLEIAMKVGMPEEKV 534
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 118/201 (58%), Gaps = 16/201 (7%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT +E V L+ KI+ GL E+L A
Sbjct: 148 LTGDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEA-------TEKLEAAD-----AGE 195
Query: 248 LRISRPELQSI--LMECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
L ++R E++ + + L A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R
Sbjct: 196 LELTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIR 255
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L++
Sbjct: 256 AVEKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDL 315
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + I ++MS +VR
Sbjct: 316 GRDPTPEEIGAEMDMSADRVR 336
>gi|425734704|ref|ZP_18853021.1| RNA polymerase principal sigma factor [Brevibacterium casei S18]
gi|425480640|gb|EKU47804.1| RNA polymerase principal sigma factor [Brevibacterium casei S18]
Length = 489
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 22/208 (10%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
+ ++S + +K Y+K + LL AE V L+K+I+ G+
Sbjct: 181 QQVVSAGATADPVKDYLKQIGKVALLNAAEEVDLAKRIEAGMY----------------- 223
Query: 241 MEQLAASLRISRPEL----QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E L +S P L + I+ + +A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 224 AEHLLEEGEVSDPRLTMDYKWIIHDGRIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 283
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRN 355
G +GL+R +EKFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R
Sbjct: 284 EGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARV 343
Query: 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+ L++ G PS + +A+ L+M+ ++V
Sbjct: 344 QRQMLQDLGREPSPEELAKELDMTPERV 371
>gi|219847900|ref|YP_002462333.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219542159|gb|ACL23897.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 381
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 117/206 (56%), Gaps = 14/206 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + V L+K ++ G ++RL E AS R R
Sbjct: 85 VRMYLQEIGQVPLLTAEQEVELAKAMEAGAIA-------RQRLDREEY-----ASAR-ER 131
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ + + AR L+ +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD
Sbjct: 132 FELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYK 191
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
KG K STY WWIRQ ++RA+ + SRT+RLP H+ E + ++ RL++ P+ +
Sbjct: 192 KGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQREPTPEE 251
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ + +S KVR EA SL+
Sbjct: 252 IADAMGISAGKVRRTLEASMHPLSLE 277
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 10/223 (4%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I++ + + K + LL+ E V L+ +K ++ + L +L PS +LA ++
Sbjct: 48 IEDSIGSFFKEMARYPLLSAEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAM 107
Query: 249 RI-SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+ S +L + L + A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R E
Sbjct: 108 GLESERQLDNRLYKGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAE 167
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD +KG+K STY YWWIRQ ++R + +SRT+RLP H+ E+L ++ A+ L++
Sbjct: 168 KFDPNKGYKFSTYAYWWIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRILKQDLQRQ 227
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409
P+ +AE + +++ +A+ ++ L R++ SLN G
Sbjct: 228 PTEKELAEEMGITR-------QALHQLLQLKRQSL-SLNHRVG 262
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 18/237 (7%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
SM+ + ++ Y+K + LL+ E + L++ + G + L+E G E
Sbjct: 135 SMVDSFGTDDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQES-GEEIPA 193
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E LA EL + A+++L +N+RLV+SIA+RY G DL+Q G +G
Sbjct: 194 EVLA--------ELNKAIKRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLG 245
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRL 360
L++ +EKFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + +IR ++ L
Sbjct: 246 LIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLL 305
Query: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+E G PS + IAE ++M ++VR ++ + +E SL GE H G
Sbjct: 306 QELGHDPSPEEIAEEMSMPVERVR-------EILKIAQEPV-SLETPIGEEEDSHLG 354
>gi|257064907|ref|YP_003144579.1| sigma-70 family RNA polymerase sigma factor [Slackia
heliotrinireducens DSM 20476]
gi|256792560|gb|ACV23230.1| RNA polymerase sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 314
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 124/205 (60%), Gaps = 26/205 (12%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL-AA 246
++ + ++ Y++ + +LLT AE V L+KK +TGL+ E ++ Q+
Sbjct: 12 VVGDSIRMYLRDIGKVDLLTPAEEVELAKKYQTGLA-------------AEAALAQMNEG 58
Query: 247 SLRISRPELQSILM---ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
S+ + R E + +L A++KLV +N+RLV+SIA++Y G + DLVQ G +GL+
Sbjct: 59 SVEVDRRECRKLLRVQRAGQEAKDKLVAANLRLVVSIAKKYRGRGLPLLDLVQEGNLGLI 118
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL--- 360
R +EKFD +KGFK+STY WWIRQ V+RA+ + +RT+RLP H+ +GL+ N +R+
Sbjct: 119 RAVEKFDYTKGFKLSTYATWWIRQAVTRAIADKARTIRLPVHV---VGLM-NKVVRVQHE 174
Query: 361 --EEKGVTPSVDRIAEYLNMSQKKV 383
+E PS IA+ L +S++ V
Sbjct: 175 LADELERDPSPAEIADRLGISEQCV 199
>gi|159039487|ref|YP_001538740.1| RpoD family RNA polymerase sigma factor [Salinispora arenicola
CNS-205]
gi|157918322|gb|ABV99749.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 329
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +++ + R EL
Sbjct: 38 YLHEISRTPLLDAATEVDLSKAIEAGLY-------------AEHLLDEDRVPAGVERAEL 84
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q ++ E A++ + +N+RLV+SIA+RY G M DL+Q G GL+R +EKFD +GF
Sbjct: 85 QRLVAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYERGF 144
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WWIRQ +SRA+ + RT+RLP HL E + +RN +L E G P ++IA
Sbjct: 145 KFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSDPEPEQIAT 204
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L +S ++V SLD
Sbjct: 205 ALGVSVERVNELVRWSQDTVSLD 227
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 110/189 (58%), Gaps = 2/189 (1%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL-RISRPEL 255
++G + LLT AE LSK ++ ++++ + +RLG + + AA + S
Sbjct: 1 MQGFGQQSLLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAF 60
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ + AR +++ SN RLV +A+RY N G D DL+ G+ GL RG+EKFD+ +GF
Sbjct: 61 RKAVKVGQEARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGF 120
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAE 374
K STY +WW+RQ ++RA+ E R +RLP HLHE + + L + E G +++AE
Sbjct: 121 KFSTYAHWWVRQAITRAISEQGRVVRLPVHLHELMAKVTKVDLEYQSEHGRRAGNEKLAE 180
Query: 375 YLNMSQKKV 383
+ +SQ+K+
Sbjct: 181 LVGISQEKL 189
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 114/189 (60%), Gaps = 14/189 (7%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL E LG + R +L
Sbjct: 129 YLREIGRVPLLNAAQEVELSKRVEAGL-FAEHKLATAEELGTD------------LRRDL 175
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ ++ + A+++LV +N+RLV+S+A++Y G + DLVQ G +GL+R +EKFD +KG+
Sbjct: 176 KQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGY 235
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ + RAL + +RT+R+P H+ E++ I + +L G P+ + +A
Sbjct: 236 KFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELAL 295
Query: 375 YLNMSQKKV 383
L+M ++V
Sbjct: 296 ELDMPLEQV 304
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG + +L
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q+++ + AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 73 QAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 132
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K + + G + + +AE
Sbjct: 133 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAE 192
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + E SLD
Sbjct: 193 ESGIPVEKINDLLEHSRDPVSLD 215
>gi|357055293|ref|ZP_09116365.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
gi|355382932|gb|EHG30022.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
Length = 381
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY W
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKK 382
WIRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE L+M++ K
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 383 V 383
V
Sbjct: 264 V 264
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 118/197 (59%), Gaps = 11/197 (5%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + ++ Y+K + ELL+ E +R +K I+ GL D+ LK + E+
Sbjct: 94 INDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDADTER----- 148
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
+L+ ++M+ +++ +LV +N+RLV+SIA+R+ G DL+Q G +GL++ ++K
Sbjct: 149 -----QLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKAVDK 203
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + +E G P
Sbjct: 204 FDYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRQLTQELGRDP 263
Query: 368 SVDRIAEYLNMSQKKVR 384
+ IA+ ++++ KVR
Sbjct: 264 LPEEIAKKMDITPDKVR 280
>gi|163849112|ref|YP_001637156.1| RNA polymerase sigma factor RpoD [Chloroflexus aurantiacus J-10-fl]
gi|222527085|ref|YP_002571556.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163670401|gb|ABY36767.1| RNA polymerase sigma factor RpoD [Chloroflexus aurantiacus J-10-fl]
gi|222450964|gb|ACM55230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 398
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+++ +N+RLV+SIA+RY + G + DL+Q G +GLLR IEKFD +KG+K STY WW
Sbjct: 159 ARQQMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDYTKGYKFSTYATWW 218
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
I+Q +SRAL + SR +RLP HL E L I++A+ +L + G P+ +A +L MS++K+
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 384 RN 385
R
Sbjct: 279 RE 280
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 120/198 (60%), Gaps = 18/198 (9%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + ++ Y+K + +LLT E V L+ +R++E + E +LA +
Sbjct: 93 INDPVRMYLKEIGRVDLLTGKEEVDLA-------------IRIQESIEAEA---ELAETN 136
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
++ P++ + ++ A++KL +N+RLV+SIA+RY G DL+Q G +GL++ +EK
Sbjct: 137 EMT-PKIDAAIIRGENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK 195
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 196 FDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREP 255
Query: 368 SVDRIAEYLNMSQKKVRN 385
S + I E ++++ +KVR
Sbjct: 256 SPEEIGEEMDLTPEKVRE 273
>gi|320096194|ref|ZP_08027783.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 178 str. F0338]
gi|319976875|gb|EFW08629.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 178 str. F0338]
Length = 543
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 114/192 (59%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + +LK R S E R
Sbjct: 246 VKDYLKQIGKVSLLNAAQEVDLARRIEAGLYAE---YKLKNRADEMTSKE---------R 293
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 294 RELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYT 353
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 354 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 413
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 414 LAKELDMTPEKV 425
>gi|218440090|ref|YP_002378419.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172818|gb|ACK71551.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 13/168 (7%)
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ I+ + +A+ K++ +N+RLV+SIA+RY G + DL+Q G +GL+R +EKFD SKG+
Sbjct: 51 KKIVEQGQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFDPSKGY 110
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAE 374
K STY YWW+RQ ++RAL E SRT+RLP H+ E L ++ + L E G P+ +A+
Sbjct: 111 KFSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQ 170
Query: 375 YLNMSQKKVRNATEAIGKV------FSLDR------EAFPSLNGLPGE 410
+ + +K+R A+ + +LD E P LP E
Sbjct: 171 RMEIPVEKLREIRHAVYRTDAKSLNITLDDNQTELGEVLPDETSLPIE 218
>gi|78778962|ref|YP_397074.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78712461|gb|ABB49638.1| putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 307
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ +++ +N+RLV+++A+RY G ++ DL+Q G +GL R +EK+D S+G + STY YWW
Sbjct: 65 AKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYWW 124
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKV 383
IRQG++RAL SRT+R+P +++E+L +R+AK +L + KG+TP+ D +AE L ++++++
Sbjct: 125 IRQGLNRALSTQSRTIRIPVNINEKLTKLRSAKSKLMQLKGITPNSDELAEELKITKEEI 184
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
+++ + E LT E ++ +I+ + L+ + L+ + G EP++E+ A ++ +S EL
Sbjct: 232 FLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCREL 291
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
QS + REK+ SN RLV+ +A++Y+ G D+ DLVQ G GL++ EKF+ SKG
Sbjct: 292 QSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGC 351
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEY 375
+ TY YWWIRQ + +++ +NSR +RLP ++ L + A++ G P+ + +A
Sbjct: 352 RFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGEQPTNEVVARR 411
Query: 376 LNMSQKKVRNATEAIGKVFSL 396
++ +K+ KV S+
Sbjct: 412 AGITIEKLAKLRAKTRKVRSM 432
>gi|160941160|ref|ZP_02088497.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
gi|158435721|gb|EDP13488.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
Length = 381
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY W
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKK 382
WIRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE L+M++ K
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 383 V 383
V
Sbjct: 264 V 264
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 118/201 (58%), Gaps = 4/201 (1%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS-MEQLAA 246
++ ++ Y++ + LL E + L++KI L L+ + L C P + +
Sbjct: 78 FTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEW 137
Query: 247 SLRISRP--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
++++ P E + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R
Sbjct: 138 AIKMGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 197
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEK 363
EKFD KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E
Sbjct: 198 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEM 257
Query: 364 GVTPSVDRIAEYLNMSQKKVR 384
G P+ + IA + M+ +K+R
Sbjct: 258 GRKPTEEEIATRMEMTIEKLR 278
>gi|40353301|gb|AAR84414.1| essential primary sigma 70 factor [Frankia sp. ORS020607]
gi|40353303|gb|AAR84415.1| essential primary sigma 70 factor [Frankia sp. CcI3]
gi|40353305|gb|AAR84416.1| essential primary sigma 70 factor [Frankia sp. CeD]
Length = 217
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 111/181 (61%), Gaps = 13/181 (7%)
Query: 242 EQLAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297
E+LA + + + P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 5 EKLAVATKKTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQE 64
Query: 298 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNA 356
G +GL+R +EKFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR
Sbjct: 65 GNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQ 124
Query: 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHC 416
+ L++ G PS + IA+ ++++ KVR ++ + +E SL GE H
Sbjct: 125 RQLLQDLGREPSPEEIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHL 176
Query: 417 G 417
G
Sbjct: 177 G 177
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L ++
Sbjct: 248 AEALEIT 254
>gi|261367093|ref|ZP_05979976.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
gi|282571217|gb|EFB76752.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
Length = 364
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 114/185 (61%), Gaps = 12/185 (6%)
Query: 206 LTHAEVVRLSKKIKT-GLSLDDH-KLRLKERLGCEPSM---EQLAASLRISRPELQSILM 260
LT V + + T G+++DD K+ LKE +G P + E++ +L+I Q+
Sbjct: 69 LTEDNVDDFEESLNTDGITIDDPVKVYLKE-IGRVPLLTPEEEIDLALKI-----QAGGP 122
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
E A+++L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY
Sbjct: 123 EGEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTY 182
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDRIAEYLNMS 379
WWIRQ ++RA+ + +RT+R+P H+ E + ++ + L E G PS + IAE L+MS
Sbjct: 183 ATWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMS 242
Query: 380 QKKVR 384
KVR
Sbjct: 243 VDKVR 247
>gi|392411413|ref|YP_006448020.1| RNA polymerase, sigma 70 subunit, RpoD [Desulfomonile tiedjei DSM
6799]
gi|390624549|gb|AFM25756.1| RNA polymerase, sigma 70 subunit, RpoD [Desulfomonile tiedjei DSM
6799]
Length = 589
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 16/185 (8%)
Query: 241 MEQLAASLRISRPELQSILMECS----LARE---KLVMSNVRLVMSIAQRYDNMGADMAD 293
+++L A + L++ LM C LAR+ +LV +N+RLV+SIA++Y N G D
Sbjct: 320 IQKLRAEAAMDEENLKAALMSCEEGEYLARKAKSELVQANLRLVVSIAKKYTNRGLQFLD 379
Query: 294 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-L 352
L+Q G IGL++ ++KF+ +G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L
Sbjct: 380 LIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKL 439
Query: 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETH 412
IR ++ ++E G P+ + IAE + +KVR KV + +E SL GE
Sbjct: 440 IRTSRYLVQEYGREPTPEEIAEKMEFPLEKVR-------KVLKIAKEPI-SLETPIGEEE 491
Query: 413 HIHCG 417
H G
Sbjct: 492 DSHLG 496
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
+++ + E LT E ++ +I+ + L+ + L+ + G EP++E+ A ++ +S EL
Sbjct: 233 FLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCREL 292
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
QS + REK+ SN RLV+ +A++Y+ G D+ DLVQ G GL++ EKF+ SKG
Sbjct: 293 QSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGC 352
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEY 375
+ TY YWWIRQ + +++ +NSR +RLP ++ L + A++ G P+ + +A
Sbjct: 353 RFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGEQPTNEVVARR 412
Query: 376 LNMSQKKVRNATEAIGKVFSL 396
++ +K+ KV S+
Sbjct: 413 AGITIEKLAKLRAKTRKVRSM 433
>gi|148272828|ref|YP_001222389.1| RNA polymerase sigma factor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830758|emb|CAN01698.1| RNA polymerase principal sigma factor [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 492
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 115/197 (58%), Gaps = 20/197 (10%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL AE V L+ +I+ GL +D +LA + I
Sbjct: 194 DPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGI 237
Query: 251 SRP---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
SR EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +E
Sbjct: 238 SRELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVE 297
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G
Sbjct: 298 KFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGRE 357
Query: 367 PSVDRIAEYLNMSQKKV 383
P+ + ++ L+M+ +KV
Sbjct: 358 PTPEELSRELDMTPEKV 374
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK 357
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQ 231
>gi|383808262|ref|ZP_09963813.1| RNA polymerase sigma factor RpoD [Rothia aeria F0474]
gi|383448918|gb|EID51864.1| RNA polymerase sigma factor RpoD [Rothia aeria F0474]
Length = 491
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 120/202 (59%), Gaps = 14/202 (6%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL + +P ++
Sbjct: 185 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL--ADNPDMDPKLK 241
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ EL+ ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL
Sbjct: 242 K----------ELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 291
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLE 361
+R +EKFD SKGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L+
Sbjct: 292 IRAVEKFDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQ 351
Query: 362 EKGVTPSVDRIAEYLNMSQKKV 383
+ G P+ + + + L+M+ +KV
Sbjct: 352 DLGREPTPEELGKELDMAPEKV 373
>gi|302386858|ref|YP_003822680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
saccharolyticum WM1]
gi|302197486|gb|ADL05057.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
saccharolyticum WM1]
Length = 380
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY WW
Sbjct: 144 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 203
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE L+MS+ KV
Sbjct: 204 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVSELAEALDMSEDKV 263
>gi|145594010|ref|YP_001158307.1| RNA polymerase sigma factor SigB [Salinispora tropica CNB-440]
gi|145303347|gb|ABP53929.1| sigma-70 region 2 domain protein [Salinispora tropica CNB-440]
Length = 332
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 22/219 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++G+ +LLT A+ V LS++I+ GL + C P L R
Sbjct: 35 VRAYLQGIGRTKLLTAAQEVELSRRIEAGL------FAATKLATCTPVSVAL-------R 81
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ + E A++ L+ +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +
Sbjct: 82 ADLELVAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 141
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E++ ++R + G P+V
Sbjct: 142 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRTRRELSVSLGREPTVAE 201
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 410
+A L++ + +V ++ S DRE SL+ GE
Sbjct: 202 VARTLDIPEIQVI-------ELISYDREPV-SLDQTVGE 232
>gi|291301996|ref|YP_003513274.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571216|gb|ADD44181.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 559
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 127/211 (60%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL A+ V L+K+I+ GL + +LKE + E++ +R
Sbjct: 257 DSVRAYLKQIGKVPLLNAAQEVELAKRIEAGLYAVERLRQLKE------AGEEIPTQVR- 309
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 310 --RDLEWVTRDGDRAKNHLLAANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 367
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 368 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 425
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 426 APEELAKEMDISPEKVLEIQQYAREPISLDQ 456
>gi|312622967|ref|YP_004024580.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203434|gb|ADQ46761.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kronotskyensis 2002]
Length = 417
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 26/226 (11%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
V VSEE L ++ L + G+++DD ++ LKE +G P + E++ + RI +
Sbjct: 121 VDDRVSEEELLKDDIENLPE----GIAIDDPVRMYLKE-IGKIPLLTPEEEIELAKRIEQ 175
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + A+++L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD
Sbjct: 176 GDEE--------AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYR 227
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R ++ L+EKG P+ +
Sbjct: 228 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEE 287
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ +NM +KVR ++ + +E SL GE H G
Sbjct: 288 IAKEMNMPVEKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 325
>gi|311111671|ref|YP_003982893.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
gi|310943165|gb|ADP39459.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
Length = 468
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 120/202 (59%), Gaps = 14/202 (6%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL + +P ++
Sbjct: 162 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL--ADNPDMDPKLK 218
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ EL+ ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL
Sbjct: 219 K----------ELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 268
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLE 361
+R +EKFD SKGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L+
Sbjct: 269 IRAVEKFDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQ 328
Query: 362 EKGVTPSVDRIAEYLNMSQKKV 383
+ G P+ + + + L+M+ +KV
Sbjct: 329 DLGREPTPEELGKELDMAPEKV 350
>gi|295838256|ref|ZP_06825189.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|197698235|gb|EDY45168.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 341
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 15/232 (6%)
Query: 156 RRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRL 214
RR ++ SQ + GS+ RSM S E+ L G Y+ + LL A+ V L
Sbjct: 8 RRQSATGSGASQASGSGETRGSRGARSM-SGEIADRDLVGMYLDEIARTPLLDAAKEVEL 66
Query: 215 SKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNV 274
S+ I+ G+ ++ L E + A SR EL+++ A++ + SN+
Sbjct: 67 SQTIEAGVFA-------RQILDGETDSKNEA-----SREELEALWEASERAKDVFIRSNL 114
Query: 275 RLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 334
RLV+++A+RY G + DL+Q G GL+R +EKFD KGFK STY WWIRQ ++R++
Sbjct: 115 RLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIA 174
Query: 335 ENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
+ SRT+RLP HL E LG IR + E G P IA L + ++V +
Sbjct: 175 DQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEIAAELGSTPERVSD 226
>gi|307700837|ref|ZP_07637862.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
gi|307613832|gb|EFN93076.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
Length = 614
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 116/192 (60%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + H L+ EQ + + + +R
Sbjct: 317 VKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAE-HLLK----------TEQDSMTPKHAR 365
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD S
Sbjct: 366 -ELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 424
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 425 KGYKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLARVQRQMLQDLGREPTPDE 484
Query: 372 IAEYLNMSQKKV 383
+A L+M+ +KV
Sbjct: 485 LARELDMTPEKV 496
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 125/209 (59%), Gaps = 20/209 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
GS+Q +P+L + Y++ + LL+ A+ V L+++++ G+ KL
Sbjct: 50 GSEQA-GAAAPDLFRQ----YLREIGRIPLLSAADEVELARRVEAGV-FAAAKLAG---- 99
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
GC A ++R +L+ +++ A+ +L+ +N+RLV+S+A+RY G M DLV
Sbjct: 100 GC--------ADAGLAR-DLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLV 150
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIR 354
Q G +GL+R +EKFD ++GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++R
Sbjct: 151 QEGNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVR 210
Query: 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+ L+E G P+ + + E L +S +KV
Sbjct: 211 TQRALLQEAGREPAAEEVGERLGLSAEKV 239
>gi|399065313|ref|ZP_10747879.1| RNA polymerase sigma factor, sigma-70 family [Novosphingobium sp.
AP12]
gi|398029770|gb|EJL23218.1| RNA polymerase sigma factor, sigma-70 family [Novosphingobium sp.
AP12]
Length = 675
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 111/182 (60%), Gaps = 16/182 (8%)
Query: 244 LAASLRISRPELQSIL-------MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+AA+ ++ PE + I+ E +A++++V +N+RLV+SIA++Y N G DL+Q
Sbjct: 409 IAAATGMALPEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 468
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRN 355
G IGL++ ++KF+ +G+K STY WWIRQ ++R++ + +RT+R+P H+ E + L+R
Sbjct: 469 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRT 528
Query: 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIH 415
++ L E+G P+ + +AE L+M +KVR KV + +E SL G+ H
Sbjct: 529 SRQFLHEQGREPTPEEMAERLSMPLEKVR-------KVMKIAKEPI-SLETPIGDEEDSH 580
Query: 416 CG 417
G
Sbjct: 581 LG 582
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 123/207 (59%), Gaps = 6/207 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT E + L++KI+ G+ + +L+E G S ++L +
Sbjct: 107 VRMYLRDIGRHPLLTAEEEMELAEKIRLGVEAEK---KLQELFGGR-SEDELTDEELDQK 162
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ ++ + +A +L SN+RLV+S+A+RY G + DL+Q G +GLLR ++KFD +
Sbjct: 163 DELEMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRGLNFLDLIQEGNLGLLRAVDKFDHT 222
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR 371
GFK STY WWIRQ +SRA+ + +RT+R+P H+ E + + RL+++ G P+ +
Sbjct: 223 LGFKFSTYATWWIRQAISRAIADQARTIRIPVHMVETINRQTRVQRRLQQELGREPTYEE 282
Query: 372 IAEYLN-MSQKKVRNATEAIGKVFSLD 397
IA ++ +S + + EAI K LD
Sbjct: 283 IAIEMDFLSPEDAKRYKEAIAKGKRLD 309
>gi|225388546|ref|ZP_03758270.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
gi|225045391|gb|EEG55637.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
Length = 381
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY WW
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE L+M++ KV
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
R +L + E ARE+L+ +N+RLV+SIA++Y G + DL+Q G IGL+R EKFD
Sbjct: 151 RLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDY 210
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVD 370
KG+K STY WWIRQ ++R + + SRT+RLP H+ E + + A R+++ G P+ D
Sbjct: 211 RKGYKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRASNRIQQTTGRDPTPD 270
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA L + +KVR EA + SL+
Sbjct: 271 EIALELGIPVEKVRRVLEAARQTISLE 297
>gi|329940007|ref|ZP_08289289.1| RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045]
gi|329300833|gb|EGG44729.1| RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045]
Length = 512
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL S ++LA L+
Sbjct: 216 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KL---------ASADKLAPKLK--- 262
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 263 RELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 322
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 323 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 382
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 383 LAKELDMTPEKV 394
>gi|260435993|ref|ZP_05789963.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260413867|gb|EEX07163.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 309
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 123/201 (61%), Gaps = 16/201 (7%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLA 245
++ + L ++ + +LLT + + + +K++ +S+ + + L G CE S E+
Sbjct: 1 MMTSSLSAFLGEIGRHQLLTPEQELMMGRKVQAMVSITE-RCHLAGGTGPACEYSDEEKG 59
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
R R A+ +++ SN+RLV+++A+RY G D+ DL+Q G +GL R
Sbjct: 60 VIRRGER------------AKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRA 107
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-G 364
+EK+D ++G + STY YWWIRQG++RAL SRT+R+P +++E+L +R AK RL ++ G
Sbjct: 108 VEKYDPTRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARLMQRNG 167
Query: 365 VTPSVDRIAEYLNMSQKKVRN 385
++PS +++AE++ + +V +
Sbjct: 168 LSPSGEQLAEFMEIPIAEVED 188
>gi|422011592|ref|ZP_16358389.1| RNA polymerase sigma factor RpoD [Actinomyces georgiae F0490]
gi|394764503|gb|EJF46279.1| RNA polymerase sigma factor RpoD [Actinomyces georgiae F0490]
Length = 531
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 114/192 (59%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + +LK R S E R
Sbjct: 234 VKDYLKQIGKVSLLNAAQEVDLARRIEAGLYAE---YKLKNRADEMTSKE---------R 281
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 282 RELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYT 341
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 342 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 401
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 402 LAKELDMTPEKV 413
>gi|239626154|ref|ZP_04669185.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|355682437|ref|ZP_09062447.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
gi|239520384|gb|EEQ60250.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
gi|354811017|gb|EHE95653.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
Length = 381
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY WW
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE L+M++ KV
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
>gi|300741779|ref|ZP_07071800.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
gi|300380964|gb|EFJ77526.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
Length = 468
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 120/202 (59%), Gaps = 14/202 (6%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL + +P ++
Sbjct: 162 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL--ADNPDMDPKLK 218
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+ EL+ ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL
Sbjct: 219 K----------ELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 268
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLE 361
+R +EKFD SKGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L+
Sbjct: 269 IRAVEKFDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQ 328
Query: 362 EKGVTPSVDRIAEYLNMSQKKV 383
+ G P+ + + + L+M+ +KV
Sbjct: 329 DLGREPTPEELGKELDMAPEKV 350
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK 357
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQ 231
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 9/199 (4%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + LLT AE + L+ KI+ G+ E+L + S
Sbjct: 115 LTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVEA-------GEQLEAAEADNAEELS 167
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
R R L I A+++L+ +N+RLV+SIA+RY G DL+Q G +GL+R +E
Sbjct: 168 RREHR-RLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 226
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G
Sbjct: 227 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRE 286
Query: 367 PSVDRIAEYLNMSQKKVRN 385
P+ + IAE ++++ +VR
Sbjct: 287 PTPEEIAEEMDLTPDRVRE 305
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ +H L +L E R +L
Sbjct: 31 YLNGIGRTALLTAQEEVDLAKRIEAGV-FANHVLETSGKLSPE------------RRSDL 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++++ + LA+ L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 78 KAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGF 137
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ I K L +K G + + +A
Sbjct: 138 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDEELAN 197
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
++ +KV + + SLD
Sbjct: 198 EAGLTVEKVADLLDHSRDPVSLD 220
>gi|357392296|ref|YP_004907137.1| putative RNA polymerase major sigma factor [Kitasatospora setae
KM-6054]
gi|311898773|dbj|BAJ31181.1| putative RNA polymerase major sigma factor [Kitasatospora setae
KM-6054]
Length = 541
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 118/194 (60%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 243 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSQADKLA--PKLKR------- 292
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 293 ---ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 349
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 350 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 409
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 410 EELAKELDMTPEKV 423
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
ELQ L E AR++++ +N+RLV+++A++Y G ++ DLVQ G +GL R +EKFD ++
Sbjct: 113 ELQKRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTR 172
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + +G S+ +
Sbjct: 173 GFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKVQQEIATNEGRIASISDL 232
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
+ L +S++ VR + + SL+
Sbjct: 233 SRALGISEETVRLTLMRVPRSVSLE 257
>gi|358064323|ref|ZP_09150899.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
gi|356697448|gb|EHI59031.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
Length = 376
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY WW
Sbjct: 140 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 199
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +AE L MS+ KV
Sbjct: 200 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALEMSEDKV 259
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 126/211 (59%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R E + E++A LR
Sbjct: 201 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAAEKMRRFAE------AGEKVAPPLRQ 254
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+ L ++ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 255 N---LSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 311
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 312 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 369
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 370 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 400
>gi|296129901|ref|YP_003637151.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cellulomonas
flavigena DSM 20109]
gi|296021716|gb|ADG74952.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulomonas
flavigena DSM 20109]
Length = 495
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 115/192 (59%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ ++ L EP + R
Sbjct: 198 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEEKLAETRDSL--EPKL----------R 245
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 246 RELEWIAQDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 305
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 306 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 365
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 366 LAKELDMTPEKV 377
>gi|227875511|ref|ZP_03993651.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269977243|ref|ZP_06184216.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|306818820|ref|ZP_07452542.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
gi|227843847|gb|EEJ54016.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269934546|gb|EEZ91107.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|304648506|gb|EFM45809.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
Length = 614
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 116/192 (60%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + H L+ EQ + + + +R
Sbjct: 317 VKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAE-HLLK----------TEQDSMTPKHAR 365
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD S
Sbjct: 366 -ELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 424
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 425 KGYKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLARVQRQMLQDLGREPTPDE 484
Query: 372 IAEYLNMSQKKV 383
+A L+M+ +KV
Sbjct: 485 LARELDMTPEKV 496
>gi|312128161|ref|YP_003993035.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312134621|ref|YP_004001959.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor owensensis OL]
gi|312792985|ref|YP_004025908.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|311774672|gb|ADQ04159.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor owensensis OL]
gi|311778180|gb|ADQ07666.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312180125|gb|ADQ40295.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 417
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 26/226 (11%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
V VSEE L ++ L + G+++DD ++ LKE +G P + E++ + RI +
Sbjct: 121 VDDRVSEEELLKDDLENLPE----GIAIDDPVRMYLKE-IGKIPLLTPEEEIELAKRIEQ 175
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + A+++L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD
Sbjct: 176 GDEE--------AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYR 227
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R ++ L+EKG P+ +
Sbjct: 228 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEE 287
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ +NM +KVR ++ + +E SL GE H G
Sbjct: 288 IAKEMNMPVEKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 325
>gi|254388870|ref|ZP_05004102.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294813166|ref|ZP_06771809.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|326441537|ref|ZP_08216271.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|197702589|gb|EDY48401.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294325765|gb|EFG07408.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
Length = 333
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 16/222 (7%)
Query: 166 SQNKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSL 224
S+ K + GS + +S E L G Y+ + LL A+ V LS+ I+ G+
Sbjct: 11 SETKGTTGRAGSVR---AVSGETADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYA 67
Query: 225 DDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRY 284
R + +E A + EL++++ E A++ + SN+RLV+++A+RY
Sbjct: 68 ---------RQILDQGVESDAGG--ATHKELEALVAEGERAKDVFIRSNLRLVVAVARRY 116
Query: 285 DNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPN 344
G + DLVQ G GL+R +EKFD SKGFK STY WWIRQ ++R++ + SRT+RLP
Sbjct: 117 PRSGLPLLDLVQEGNAGLVRAVEKFDYSKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 176
Query: 345 HLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
HL E LG IR + EKG P IA+ L + ++V +
Sbjct: 177 HLVEELGRIRRVQREFNREKGREPEAAEIAQELGSTPERVTD 218
>gi|357402165|ref|YP_004914090.1| RNA polymerase principal sigma factor hrdB [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|337768574|emb|CCB77287.1| RNA polymerase principal sigma factor hrdB [Streptomyces cattleya
NRRL 8057 = DSM 46488]
Length = 517
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 118/194 (60%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSSADKLA--PKLQR------- 268
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 269 ---ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 325
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 326 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 385
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 386 EELAKELDMTPEKV 399
>gi|418472299|ref|ZP_13042049.1| RNA polymerase sigma factor [Streptomyces coelicoflavus ZG0656]
gi|371547089|gb|EHN75499.1| RNA polymerase sigma factor [Streptomyces coelicoflavus ZG0656]
Length = 554
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 118/194 (60%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 256 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR------- 305
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 306 ---ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 362
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 363 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 422
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 423 EELAKELDMTPEKV 436
>gi|253827499|ref|ZP_04870384.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313141707|ref|ZP_07803900.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|253510905|gb|EES89564.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313130738|gb|EFR48355.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
Length = 616
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 6/147 (4%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K+ SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG+K STY WW
Sbjct: 377 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 436
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR--LEEKGVTPSVDRIAEYLNMSQKK 382
IRQ +SRA+ + +RT+R+P H+ E + I N +R L+E+G P +D+IAE + + K
Sbjct: 437 IRQAISRAIADQARTIRIPIHMIETINRI-NKIMRKYLQEEGKEPDIDKIAEEVGLPVDK 495
Query: 383 VRNATEAIGKVFSLDREAFPSLNGLPG 409
V+N + + SL+ P NG G
Sbjct: 496 VKNVIKITKEPISLEA---PIGNGEDG 519
>gi|302871329|ref|YP_003839965.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor obsidiansis OB47]
gi|302574188|gb|ADL41979.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor obsidiansis OB47]
Length = 417
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 26/226 (11%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
V VSEE L ++ L + G+++DD ++ LKE +G P + E++ + RI +
Sbjct: 121 VDDRVSEEELLKDDLENLPE----GIAIDDPVRMYLKE-IGKIPLLTPEEEIELAKRIEQ 175
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + A+++L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD
Sbjct: 176 GDEE--------AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYR 227
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R ++ L+EKG P+ +
Sbjct: 228 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEE 287
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ +NM +KVR ++ + +E SL GE H G
Sbjct: 288 IAKEMNMPVEKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 325
>gi|283457795|ref|YP_003362387.1| DNA-directed RNA polymerase, sigma subunit [Rothia mucilaginosa
DY-18]
gi|283133802|dbj|BAI64567.1| DNA-directed RNA polymerase, sigma subunit [Rothia mucilaginosa
DY-18]
Length = 460
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 120/203 (59%), Gaps = 16/203 (7%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+K+I+ GL + HKL P M+
Sbjct: 154 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAKRIEAGLYAE-HKL------AENPDMD 206
Query: 243 Q-LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
+ L +LR ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +G
Sbjct: 207 KDLKKALRW-------VVHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLG 259
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRL 360
L+R +EKFD SKGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L
Sbjct: 260 LIRAVEKFDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQML 319
Query: 361 EEKGVTPSVDRIAEYLNMSQKKV 383
++ G P+ + + + L+M+ +KV
Sbjct: 320 QDLGREPTPEELGKELDMTPEKV 342
>gi|148266058|ref|YP_001232764.1| RpoD family RNA polymerase sigma factor [Geobacter uraniireducens
Rf4]
gi|146399558|gb|ABQ28191.1| RNA polymerase, sigma 70 subunit, RpoD [Geobacter uraniireducens
Rf4]
Length = 586
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 121/208 (58%), Gaps = 18/208 (8%)
Query: 219 KTGLSLDDHKLRLKERL-GCEPSMEQLAASLRISRPELQSILM-------ECSLAREKLV 270
K G+SL++ + +L++R E ++++ EL + L+ + LA+ +LV
Sbjct: 296 KLGISLEEAQ-KLEKRFRNAEKKLKKIEQESGFQATELSTALLAIEEGERKAKLAKSELV 354
Query: 271 MSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS 330
+N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++
Sbjct: 355 EANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAIT 414
Query: 331 RALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEA 389
RA+ + +RT+R+P H+ E + LIR ++ ++E G PS + IAE +++ KVR
Sbjct: 415 RAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPLDKVR----- 469
Query: 390 IGKVFSLDREAFPSLNGLPGETHHIHCG 417
KV + +E SL GE H G
Sbjct: 470 --KVLKIAKEPI-SLETPIGEEEDSHLG 494
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT +E V L+ KI+ G KL E E S +
Sbjct: 149 LTGDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEAT-QKLEDFEDEKIELSRAEQRRL 207
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+RI + L A+++L+ +N+RLV+SIA+RY G DL+Q G +GL+R +E
Sbjct: 208 MRIEQVGLD--------AKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 259
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G
Sbjct: 260 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRD 319
Query: 367 PSVDRIAEYLNMSQKKVRN 385
P+ + I + MS +VR
Sbjct: 320 PTPEEIGAEMGMSPDRVRE 338
>gi|85373960|ref|YP_458022.1| RNA polymerase sigma factor RpoD [Erythrobacter litoralis HTCC2594]
gi|84787043|gb|ABC63225.1| RNA polymerase sigma-70 factor [Erythrobacter litoralis HTCC2594]
Length = 675
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 23/233 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y+ + E+ L KK K + D + +R+ E + +A+ ++
Sbjct: 365 LQAYIGNELDEDFLKDR-----VKKDKKWAAFADKEADAIDRIRTE--IADIASQTGMAL 417
Query: 253 PELQSIL-------MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
PE + I+ E +A++++V +N+RLV+SIA++Y N G DL+Q G IGL++
Sbjct: 418 PEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 477
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKG 364
++KF+ +G+K STY WWIRQ ++R++ + +RT+R+P H+ E + L+R ++ L E+G
Sbjct: 478 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQG 537
Query: 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
P+ + +AE L+M +KVR KV + +E SL G+ H G
Sbjct: 538 REPTPEEMAERLSMPLEKVR-------KVMKIAKEPI-SLETPIGDEEDSHLG 582
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 124/209 (59%), Gaps = 20/209 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
GS+Q +P+L + Y++ + LL+ A+ V L+++++ G+ KL
Sbjct: 50 GSEQA-GAAAPDLFRQ----YLREIGRIPLLSAADEVELARRVEAGV-FAAAKLAG---- 99
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
GC A ++R +L+ +++ A+ +L+ +N+RLV+S+A+RY G M DLV
Sbjct: 100 GC--------ADAGLAR-DLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLV 150
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIR 354
Q G +GL+R +EKFD ++GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++R
Sbjct: 151 QEGNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVR 210
Query: 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+ L+E G P + + E L +S +KV
Sbjct: 211 TQRALLQEAGREPGAEEVGERLGLSAEKV 239
>gi|302519838|ref|ZP_07272180.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
gi|302428733|gb|EFL00549.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
Length = 341
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 15/232 (6%)
Query: 156 RRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRL 214
RR ++ SQ + GS+ RSM S E+ L G Y+ + LL A+ V L
Sbjct: 8 RRQSATGSGASQASGSGETRGSRGARSM-SGEIADRDLVGMYLDEIARTPLLDAAKEVEL 66
Query: 215 SKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNV 274
S+ I+ G+ ++ L E + SR EL+++ A++ + SN+
Sbjct: 67 SQTIEAGVFA-------RQILDGETDTKN-----ETSREELEALWEASERAKDVFIRSNL 114
Query: 275 RLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 334
RLV+++A+RY G + DL+Q G GL+R +EKFD KGFK STY WWIRQ ++R++
Sbjct: 115 RLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIA 174
Query: 335 ENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
+ SRT+RLP HL E LG IR + E G P IA L + ++V +
Sbjct: 175 DQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEIAAELGSTPERVSD 226
>gi|374989227|ref|YP_004964722.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
gi|297159879|gb|ADI09591.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
Length = 333
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
Query: 175 NGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+G+ +R+ E+ L G Y+ + LL A+ V LS+ I+ G+ ++
Sbjct: 17 DGANSVRAT-GGEIADRDLVGMYLDEIARTPLLDAAKEVELSQAIEAGVYA-------QQ 68
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
L E A + SR EL++I E + A++ + SN+RLV+++A+RY G + D
Sbjct: 69 ILDGEIEDAPAAGA---SRGELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLD 125
Query: 294 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353
L+Q G GL+R +EKFD +KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG I
Sbjct: 126 LIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRI 185
Query: 354 RNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRN 385
R + E G P IA L + ++V +
Sbjct: 186 RRVQREFNREHGREPEHSEIAAELGSTTERVSD 218
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 36 YLNGIGKTALLTAADEVELAKRIEAGLYAQ-HLLATRKRLG-ENRKRDLAAVVR------ 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 88 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 142
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K + + G + + +AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAE 202
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + E SLD
Sbjct: 203 ESGIPVEKINDLLEHSRDPVSLD 225
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 110/182 (60%), Gaps = 23/182 (12%)
Query: 239 PSMEQLAASLRISRPELQSILME-------------CSL---------AREKLVMSNVRL 276
P+ ++ A + +S ELQ+IL E C+L AR++++ +N+RL
Sbjct: 88 PTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARDRMIAANLRL 147
Query: 277 VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336
V+++A++Y G ++ DLVQ G +GL R +EKFD ++GF+ STY YWWIRQG++RA+
Sbjct: 148 VVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQ 207
Query: 337 SRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 395
SRT+RLP H+ E+L I+ + + ++G ++ +A+ L +S++ VR + + S
Sbjct: 208 SRTIRLPVHVTEKLNRIKRVQQEIASQEGRIATLTDLAQKLGLSEETVRLTLMRVPRSVS 267
Query: 396 LD 397
L+
Sbjct: 268 LE 269
>gi|405979920|ref|ZP_11038261.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391295|gb|EJZ86359.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 619
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+++I+ GL + +LK + E R
Sbjct: 322 VKDYLKQIGKVSLLNAEQEVDLARRIEAGLYAE---YKLKNEADSMTAKE---------R 369
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + + LA+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 370 RELHFMASDGQLAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYT 429
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 430 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 489
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 490 LAKELDMTPEKV 501
>gi|229820409|ref|YP_002881935.1| RNA polymerase sigma factor [Beutenbergia cavernae DSM 12333]
gi|229566322|gb|ACQ80173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Beutenbergia
cavernae DSM 12333]
Length = 499
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + E L SME ++ R
Sbjct: 203 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE-------ETLAAGGSME-----FKLRR 250
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 251 -ELEWIAADGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 309
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 310 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 369
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 370 LAKELDMTPEKV 381
>gi|302522320|ref|ZP_07274662.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
gi|302431215|gb|EFL03031.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
Length = 514
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 218 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLQR--------- 265
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 266 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 324
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 325 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 384
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 385 LAKELDMTPEKV 396
>gi|318058872|ref|ZP_07977595.1| RNA polymerase principal sigma factor [Streptomyces sp. SA3_actG]
gi|333027299|ref|ZP_08455363.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
gi|332747151|gb|EGJ77592.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
Length = 338
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 127/216 (58%), Gaps = 25/216 (11%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
+P+L + Y++ + LLT A+ V L+++++ GL + KL G P +L
Sbjct: 38 APDLFRQ----YLREIGRIPLLTAADEVDLARRVEAGL-FAEAKL-----AGPGPLDTRL 87
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A +L +++ A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R
Sbjct: 88 AL-------DLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIR 140
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD ++GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+
Sbjct: 141 AVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRGLLQER 200
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDRE 399
G PS +A L +++++V G+V L +E
Sbjct: 201 GHEPSHAEVAALLGLTKERV-------GEVLRLAQE 229
>gi|254386999|ref|ZP_05002279.1| RNA polymerase sigma factor [Streptomyces sp. Mg1]
gi|194345824|gb|EDX26790.1| RNA polymerase sigma factor [Streptomyces sp. Mg1]
Length = 520
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 224 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 271
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 272 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 330
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 331 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 390
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 391 LAKELDMTPEKV 402
>gi|408681217|ref|YP_006881044.1| RNA polymerase sigma factor RpoD [Streptomyces venezuelae ATCC
10712]
gi|328885546|emb|CCA58785.1| RNA polymerase sigma factor RpoD [Streptomyces venezuelae ATCC
10712]
Length = 567
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 118/194 (60%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 269 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR------- 318
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 319 ---ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 375
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 376 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 435
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 436 EELAKELDMTPEKV 449
>gi|295836123|ref|ZP_06823056.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295825874|gb|EDY42152.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 493
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 197 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLQR--------- 244
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 245 -ELEIIAEDGGRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 303
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 304 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 363
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 364 LAKELDMTPEKV 375
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V LSK+I+ GL H L +RL P+ ++ +L
Sbjct: 30 YLNGIGRTALLTAADEVELSKRIEAGLYAA-HILETGKRLS--PAKKR----------DL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+++ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 77 ATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 136
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L ++ G + D +AE
Sbjct: 137 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAE 196
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ K+ + + SLD
Sbjct: 197 ESGIPAHKIADLLDHSRDPVSLD 219
>gi|344996804|ref|YP_004799147.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965023|gb|AEM74170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor lactoaceticus 6A]
Length = 419
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 26/226 (11%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
V VSEE L ++ L + G+++DD ++ LKE +G P + E++ + RI +
Sbjct: 123 VDDRVSEEELLKDDLENLPE----GIAIDDPVRMYLKE-IGKIPLLTPEEEIELAKRIEQ 177
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + A+++L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD
Sbjct: 178 GDEE--------AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYR 229
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R ++ L+EKG P+ +
Sbjct: 230 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEE 289
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ +NM +KVR ++ + +E SL GE H G
Sbjct: 290 IAKEMNMPVEKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 327
>gi|386586536|ref|YP_006082938.1| RNA polymerase sigma factor RpoD [Streptococcus suis D12]
gi|353738682|gb|AER19690.1| RNA polymerase sigma factor RpoD [Streptococcus suis D12]
Length = 372
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 17/166 (10%)
Query: 225 DDHKLRLKERLGCEPSM-----EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279
D ++ LKE +G P + ++LA ++ PE A+++L +N+RLV+S
Sbjct: 100 DPVRMYLKE-IGVVPLLTNEEEQELALAVEAGDPE----------AKQRLAEANLRLVVS 148
Query: 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339
IA+RY G DL+Q G +GL++ ++KFD SKGFK STY WWIRQ ++RA+ + +RT
Sbjct: 149 IAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQART 208
Query: 340 LRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ +KVR
Sbjct: 209 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVR 254
>gi|40353307|gb|AAR84417.1| essential primary sigma 70 factor [Frankia sp. ARgP5ag]
Length = 217
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 100/149 (67%), Gaps = 5/149 (3%)
Query: 242 EQLAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297
E+LA + + + P +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 5 EKLAVATKKTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQE 64
Query: 298 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNA 356
G +GL+R +EKFD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR
Sbjct: 65 GNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQ 124
Query: 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385
+ L++ G PS + IA+ ++++ KVR
Sbjct: 125 RQLLQDLGREPSPEVIAKEMDLTPDKVRE 153
>gi|385678070|ref|ZP_10051998.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 306
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 118/207 (57%), Gaps = 24/207 (11%)
Query: 184 ISPELIQ--NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
++P L + + ++ Y+ G+ LLT E V L+K+I+ GL
Sbjct: 1 MTPPLFEPADPVRAYLTGISRAGLLTIEEEVTLAKRIEAGLY-----------------A 43
Query: 242 EQLAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297
+ L A+ R+ P +L +I E A+ +L+ +N+RLV+SIA+RY G + DL+Q
Sbjct: 44 QHLLATTRVLDPQRRADLLTIAEEGREAKNRLLEANLRLVVSIAKRYTGRGMSLLDLIQE 103
Query: 298 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK 357
G +GL+R +EK+D + GFK STY WWIRQ +SRAL + SRT+R+P HL E++ + A+
Sbjct: 104 GNLGLIRAVEKYDYTPGFKFSTYATWWIRQAISRALADQSRTIRIPVHLAEQVNRVLAAR 163
Query: 358 LRLEEK-GVTPSVDRIAEYLNMSQKKV 383
L + G P + IA L+++ +V
Sbjct: 164 RELAARLGREPGHEDIAAELSLTPFQV 190
>gi|126695941|ref|YP_001090827.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126542984|gb|ABO17226.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 307
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ +++ +N+RLV+++A+RY G ++ DL+Q G +GL R +EK+D S+G + STY YWW
Sbjct: 65 AKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYWW 124
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKV 383
IRQG++RAL SRT+R+P +++E+L +R+AK +L + KG+ PS D +AE + ++++++
Sbjct: 125 IRQGLNRALSTQSRTIRIPVNINEKLTKLRSAKSKLMQLKGIPPSTDELAEEMKITKEEI 184
>gi|441151865|ref|ZP_20965883.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440618851|gb|ELQ81912.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 362
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 15/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+++ GL KL E G R+ R
Sbjct: 67 VKDYLKLIGKVPLLNAEQEVELAKRVEAGL-FAQEKLDTGEPTG------------RLRR 113
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ ++ + + A+E LV +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 114 -ELEILVADGARAKEHLVEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYV 172
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + + R + L++ G P+ +
Sbjct: 173 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEIINKVARIQRQMLQDTGREPTPEE 232
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 233 LAKELDMTPEKV 244
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V LSK+I+ GL H L +RL P+ ++ +L
Sbjct: 30 YLNGIGRTALLTAADEVELSKRIEAGLYAA-HILETGKRLS--PAKKR----------DL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+++ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 77 ATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 136
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L ++ G + D +AE
Sbjct: 137 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAE 196
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ K+ + + SLD
Sbjct: 197 ESGIPAHKIADLLDHSRDPVSLD 219
>gi|222528719|ref|YP_002572601.1| RpoD subfamily RNA polymerase sigma-70 factor [Caldicellulosiruptor
bescii DSM 6725]
gi|222455566|gb|ACM59828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor bescii DSM 6725]
Length = 417
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 26/226 (11%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
V VSEE L ++ L + G+++DD ++ LKE +G P + E++ + RI +
Sbjct: 121 VDDRVSEEELLKDDLENLPE----GIAIDDPVRMYLKE-IGKIPLLTPEEEIELAKRIEQ 175
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + A+++L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD
Sbjct: 176 GDEE--------AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYR 227
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R ++ L+EKG P+ +
Sbjct: 228 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEE 287
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ +NM +KVR ++ + +E SL GE H G
Sbjct: 288 IAKEMNMPVEKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 325
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 1/162 (0%)
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ E A I EL+ L A++ ++ +N+RLV+++A++Y G ++ DLVQ
Sbjct: 109 IDAGYEAWAEKAAIDAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQ 168
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356
G +GL R +EKFD ++GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+
Sbjct: 169 EGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRV 228
Query: 357 KLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + +G S+ +A L +S+ VR E + + SLD
Sbjct: 229 QQEIASNEGRIASIADLARELGISEDTVRQTLERVPRSVSLD 270
>gi|318080032|ref|ZP_07987364.1| RNA polymerase sigma factor [Streptomyces sp. SA3_actF]
Length = 340
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 127/216 (58%), Gaps = 25/216 (11%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
+P+L + Y++ + LLT A+ V L+++++ GL + KL G P +L
Sbjct: 40 APDLFRQ----YLREIGRIPLLTAADEVDLARRVEAGL-FAEAKL-----AGPGPLDTRL 89
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
A +L +++ A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R
Sbjct: 90 AL-------DLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIR 142
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEK 363
+EKFD ++GFK STY WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+
Sbjct: 143 AVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRGLLQER 202
Query: 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDRE 399
G PS +A L +++++V G+V L +E
Sbjct: 203 GHEPSHAEVAALLGLTKERV-------GEVLRLAQE 231
>gi|257068601|ref|YP_003154856.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
gi|256559419|gb|ACU85266.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
Length = 433
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 115/192 (59%), Gaps = 8/192 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + ++L + S L +
Sbjct: 131 VKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDDSFRDKNGRLTKAG 183
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL I + A++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 184 RELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYA 243
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 244 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 303
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 304 LAKELDMTPEKV 315
>gi|302024138|ref|ZP_07249349.1| RNA polymerase sigma factor RpoD [Streptococcus suis 05HAS68]
Length = 372
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 17/166 (10%)
Query: 225 DDHKLRLKERLGCEPSM-----EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279
D ++ LKE +G P + ++LA ++ PE A+++L +N+RLV+S
Sbjct: 100 DPVRMYLKE-IGVVPLLTNEEEQELALAVEAGDPE----------AKQRLAEANLRLVVS 148
Query: 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339
IA+RY G DL+Q G +GL++ ++KFD SKGFK STY WWIRQ ++RA+ + +RT
Sbjct: 149 IAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQART 208
Query: 340 LRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ +KVR
Sbjct: 209 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVR 254
>gi|318059566|ref|ZP_07978289.1| RNA polymerase sigma factor [Streptomyces sp. SA3_actG]
gi|318075441|ref|ZP_07982773.1| RNA polymerase sigma factor [Streptomyces sp. SA3_actF]
Length = 446
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 150 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLQR--------- 197
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 198 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 256
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 257 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 316
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 317 LAKELDMTPEKV 328
>gi|333024008|ref|ZP_08452072.1| putative RNA polymerase sigma factor RpoS [Streptomyces sp. Tu6071]
gi|332743860|gb|EGJ74301.1| putative RNA polymerase sigma factor RpoS [Streptomyces sp. Tu6071]
Length = 493
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 197 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLQR--------- 244
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 245 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 303
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 304 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 363
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 364 LAKELDMTPEKV 375
>gi|76799605|ref|ZP_00781725.1| RNA polymerase major sigma factor RpoD [Streptococcus agalactiae
18RS21]
gi|76585040|gb|EAO61678.1| RNA polymerase major sigma factor RpoD [Streptococcus agalactiae
18RS21]
Length = 278
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 16/196 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+K I+ GL + KLR R G P+
Sbjct: 87 VHAYLREIGRVPLLTAEEEVELAKAIEIGL-YAEQKLRAA-RTGPVPAQYS--------- 135
Query: 253 PE----LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
PE L ++ E LA+ +L+ SN+RLV+S+A+RY G + DL+Q G +GL+R +EK
Sbjct: 136 PEWFEDLNELVREGKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNLGLIRAVEK 195
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTP 367
FD ++G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + + + RL +E G P
Sbjct: 196 FDYTRGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQELGREP 255
Query: 368 SVDRIAEYLNMSQKKV 383
++ ++ LN+ +V
Sbjct: 256 TLHELSRELNVDHDRV 271
>gi|146319082|ref|YP_001198794.1| RNA polymerase sigma factor RpoD [Streptococcus suis 05ZYH33]
gi|146321288|ref|YP_001200999.1| RNA polymerase sigma factor RpoD [Streptococcus suis 98HAH33]
gi|223932503|ref|ZP_03624504.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptococcus
suis 89/1591]
gi|253752138|ref|YP_003025279.1| RNA polymerase sigma factor RpoD [Streptococcus suis SC84]
gi|253753963|ref|YP_003027104.1| RNA polymerase sigma factor RpoD [Streptococcus suis P1/7]
gi|253755898|ref|YP_003029038.1| RNA polymerase sigma factor RpoD [Streptococcus suis BM407]
gi|330833083|ref|YP_004401908.1| RNA polymerase sigma factor RpoD [Streptococcus suis ST3]
gi|386578260|ref|YP_006074666.1| RNA polymerase sigma factor rpoD [Streptococcus suis GZ1]
gi|386580329|ref|YP_006076734.1| RNA polymerase sigma factor RpoD [Streptococcus suis JS14]
gi|386582344|ref|YP_006078748.1| RNA polymerase sigma factor RpoD [Streptococcus suis SS12]
gi|386584473|ref|YP_006080876.1| RNA polymerase sigma factor RpoD [Streptococcus suis D9]
gi|386588530|ref|YP_006084931.1| RNA polymerase sigma factor RpoD [Streptococcus suis A7]
gi|389856915|ref|YP_006359158.1| RNA polymerase sigma factor RpoD [Streptococcus suis ST1]
gi|403061898|ref|YP_006650114.1| RNA polymerase sigma factor RpoD [Streptococcus suis S735]
gi|417092434|ref|ZP_11957118.1| RNA polymerase sigma factor RpoD [Streptococcus suis R61]
gi|145689888|gb|ABP90394.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Streptococcus suis 05ZYH33]
gi|145692094|gb|ABP92599.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Streptococcus suis 98HAH33]
gi|223898774|gb|EEF65134.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptococcus
suis 89/1591]
gi|251816427|emb|CAZ52060.1| RNA polymerase sigma factor RpoD [Streptococcus suis SC84]
gi|251818362|emb|CAZ56188.1| RNA polymerase sigma factor RpoD [Streptococcus suis BM407]
gi|251820209|emb|CAR46610.1| RNA polymerase sigma factor RpoD [Streptococcus suis P1/7]
gi|292558723|gb|ADE31724.1| RNA polymerase sigma factor rpoD [Streptococcus suis GZ1]
gi|319758521|gb|ADV70463.1| RNA polymerase sigma factor RpoD [Streptococcus suis JS14]
gi|329307306|gb|AEB81722.1| RNA polymerase sigma factor RpoD [Streptococcus suis ST3]
gi|353532427|gb|EHC02098.1| RNA polymerase sigma factor RpoD [Streptococcus suis R61]
gi|353734490|gb|AER15500.1| RNA polymerase sigma factor RpoD [Streptococcus suis SS12]
gi|353736619|gb|AER17628.1| RNA polymerase sigma factor RpoD [Streptococcus suis D9]
gi|353740633|gb|AER21640.1| RNA polymerase sigma factor RpoD [Streptococcus suis ST1]
gi|354985691|gb|AER44589.1| RNA polymerase sigma factor RpoD [Streptococcus suis A7]
gi|402809224|gb|AFR00716.1| RNA polymerase sigma factor RpoD [Streptococcus suis S735]
Length = 372
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 17/166 (10%)
Query: 225 DDHKLRLKERLGCEPSM-----EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279
D ++ LKE +G P + ++LA ++ PE A+++L +N+RLV+S
Sbjct: 100 DPVRMYLKE-IGVVPLLTNEEEQELALAVEAGDPE----------AKQRLAEANLRLVVS 148
Query: 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339
IA+RY G DL+Q G +GL++ ++KFD SKGFK STY WWIRQ ++RA+ + +RT
Sbjct: 149 IAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQART 208
Query: 340 LRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 384
+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ +KVR
Sbjct: 209 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVR 254
>gi|48743|emb|CAA37174.1| unnamed protein product [Streptomyces coelicolor A3(2)]
Length = 332
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G + +
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGADAT----- 82
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
R ELQ+++ E A++ + SN+RLV+++A+RY G + DL+Q G GL+R
Sbjct: 83 ------REELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRA 136
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKG 364
+EKFD KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG IR + E G
Sbjct: 137 VEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHG 196
Query: 365 VTPSVDRIAEYLNMSQKKVRN 385
P IA L + ++V +
Sbjct: 197 REPEPAEIAAELGSTPERVHD 217
>gi|418467800|ref|ZP_13038669.1| RNA polymerase principal sigma factor [Streptomyces coelicoflavus
ZG0656]
gi|371551646|gb|EHN78925.1| RNA polymerase principal sigma factor [Streptomyces coelicoflavus
ZG0656]
Length = 332
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G + +
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGADAT----- 82
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
R ELQ+++ E A++ + SN+RLV+++A+RY G + DL+Q G GL+R
Sbjct: 83 ------REELQTLIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRA 136
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKG 364
+EKFD KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG IR + E G
Sbjct: 137 VEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHG 196
Query: 365 VTPSVDRIAEYLNMSQKKVRN 385
P IA L + ++V +
Sbjct: 197 REPEPAEIAAELGSTPERVTD 217
>gi|320547037|ref|ZP_08041336.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
equinus ATCC 9812]
gi|320448322|gb|EFW89066.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
equinus ATCC 9812]
Length = 369
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++MS KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMSPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|386284675|ref|ZP_10061894.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. AR]
gi|385344078|gb|EIF50795.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. AR]
Length = 617
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 10/157 (6%)
Query: 250 ISRPELQSILMEC-------SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
+S +LQ IL + +A+ ++ SN+RLV+SIA+RY N G DL+Q G IGL
Sbjct: 356 LSEEKLQEILEQIRQGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGL 415
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR--L 360
++ ++KF+ KG+K STY WWIRQ +SRA+ + +RT+R+P H+ E + I N +R L
Sbjct: 416 MKAVDKFEYEKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRI-NKIIRKHL 474
Query: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+E G P +D IAE + +S KV+N + + SL+
Sbjct: 475 QETGKEPDLDTIAEEVGLSVDKVKNVIKITKEPVSLE 511
>gi|48745|emb|CAA37175.1| unnamed protein product [Streptomyces coelicolor A3(2)]
Length = 442
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 146 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 193
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 194 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 252
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 253 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 312
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 313 LAKELDMTPEKV 324
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L+ L A+E+++ +N+RLV+++A++Y G D+ DL+Q G +GL R +E++D +
Sbjct: 75 DLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVERYDPRR 134
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
GF+ STY YWWIRQG++RAL SRT+RLP H+ E L IR + L E G P++ +
Sbjct: 135 GFRFSTYAYWWIRQGITRALASQSRTIRLPVHVTETLNRIRTCQGELTREHGRQPTLAEL 194
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A + + + ++R+ I + SL+
Sbjct: 195 ARAVGLDEARLRSTLAHIPRPVSLE 219
>gi|160937106|ref|ZP_02084469.1| hypothetical protein CLOBOL_01996 [Clostridium bolteae ATCC
BAA-613]
gi|158440007|gb|EDP17755.1| hypothetical protein CLOBOL_01996 [Clostridium bolteae ATCC
BAA-613]
Length = 378
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 26/211 (12%)
Query: 214 LSKKIKTGLSLDDH-KLRLKE-----RLGCEPSMEQLAASLRISRPELQSILMECSLARE 267
L + G+SL+D ++ LKE LG E +E LA + + PE AR+
Sbjct: 94 LDLSVPEGVSLEDPVRMYLKEIGKIPLLGMEDEVE-LAKKMELGDPE----------ARK 142
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+L SN+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KG+K STY WWIRQ
Sbjct: 143 RLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQ 202
Query: 328 GVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 386
++RA+ + +RT+R+P H+ E + L+R ++ L+E G P+ + IA L++
Sbjct: 203 AITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARLDL-------P 255
Query: 387 TEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
E + ++ + +E SL GE H G
Sbjct: 256 VERVSEIMKMSQEPV-SLETPIGEEEDSHLG 285
>gi|386385680|ref|ZP_10070942.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
gi|385666870|gb|EIF90351.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
Length = 333
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 12/191 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LS+ I+ G+ ++ L E E A R EL
Sbjct: 39 YLDEIARTPLLDAAREVELSQTIEAGVYA-------RQILDGEVEGEAGGAG----REEL 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+++ A+++ + SN+RLV+++A+RY G + DL+Q G GL+R +EKFD +KGF
Sbjct: 88 EALAAAGERAKDEFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGF 147
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WWIRQ ++R++ + SRT+RLP HL E LG IR + EKG P IA+
Sbjct: 148 KFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREKGREPEAAEIAQ 207
Query: 375 YLNMSQKKVRN 385
L + ++V +
Sbjct: 208 ELGSTPERVTD 218
>gi|357237237|ref|ZP_09124580.1| RNA polymerase sigma factor RpoD [Streptococcus criceti HS-6]
gi|356885219|gb|EHI75419.1| RNA polymerase sigma factor RpoD [Streptococcus criceti HS-6]
Length = 369
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|302554625|ref|ZP_07306967.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
gi|302472243|gb|EFL35336.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
Length = 513
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 217 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 264
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 265 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 323
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 324 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 383
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 384 LAKELDMTPEKV 395
>gi|21224164|ref|NP_629943.1| RNA polymerase sigma factor [Streptomyces coelicolor A3(2)]
gi|289768642|ref|ZP_06528020.1| transcription initiation factor sigma [Streptomyces lividans TK24]
gi|12644145|sp|P18183.2|HRDB_STRCO RecName: Full=RNA polymerase principal sigma factor HrdB
gi|3036885|emb|CAA18518.1| major vegetative sigma factor [Streptomyces coelicolor A3(2)]
gi|289698841|gb|EFD66270.1| transcription initiation factor sigma [Streptomyces lividans TK24]
Length = 511
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 215 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 262
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 263 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 321
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 322 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 381
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 382 LAKELDMTPEKV 393
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 7/178 (3%)
Query: 221 GLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSI 280
GLSL + + R+ G EQ A I EL+ L A++ ++ +N+RLV+++
Sbjct: 77 GLSLQELQSRID--AGYVAWAEQAA----IEAKELKLSLRNGRRAKDHMIQANLRLVVAV 130
Query: 281 AQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTL 340
A++Y G ++ DLVQ G +GL R +EKFD ++GF+ STY YWWIRQG++RA+ SRT+
Sbjct: 131 AKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTI 190
Query: 341 RLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
RLP H+ E+L I+ + + +G S+ +A L +S+ VR E + + SLD
Sbjct: 191 RLPVHVTEKLNRIKRVQQEIASNEGRIASIADLARELGISEDTVRQTLERVPRSVSLD 248
>gi|21221637|ref|NP_627416.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289771070|ref|ZP_06530448.1| RNA polymerase principal sigma factor hrdD [Streptomyces lividans
TK24]
gi|19856654|sp|P18249.2|HRDD_STRCO RecName: Full=RNA polymerase principal sigma factor HrdD
gi|7799522|emb|CAB90986.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289701269|gb|EFD68698.1| RNA polymerase principal sigma factor hrdD [Streptomyces lividans
TK24]
Length = 332
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G + +
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGADAT----- 82
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
R ELQ+++ E A++ + SN+RLV+++A+RY G + DL+Q G GL+R
Sbjct: 83 ------REELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRA 136
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKG 364
+EKFD KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG IR + E G
Sbjct: 137 VEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHG 196
Query: 365 VTPSVDRIAEYLNMSQKKVRN 385
P IA L + ++V +
Sbjct: 197 REPEPAEIAAELGSTPERVTD 217
>gi|395770929|ref|ZP_10451444.1| RNA polymerase sigma factor [Streptomyces acidiscabies 84-104]
Length = 513
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 217 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSNADKLA--PKLKR--------- 264
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 265 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 323
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 324 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 383
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 384 LAKELDMTPEKV 395
>gi|153311|gb|AAA26765.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450079|prf||1920369C RNA polymerase:SUBUNIT=sigma
Length = 325
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 184 ISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+ E+ L G Y+ + LL A+ V LS+ I+ G+ R G P+
Sbjct: 18 VGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYARQILDEATPREGESPA-- 75
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
R EL+++ E A+E + SN+RLV+++ +RY G + DL+Q G GL
Sbjct: 76 ---------REELEALAAEGERAKEVFIRSNLRLVVAVVRRYPRSGLPLLDLIQEGNAGL 126
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-E 361
+R +EKFD +KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG IR +
Sbjct: 127 VRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNR 186
Query: 362 EKGVTPSVDRIAEYLNMSQKKVRN----ATEAIGKVFSLDREAFPSLNGLPGETHHI 414
E G P IA L+ ++K+V + A + + S+D E L +T I
Sbjct: 187 ENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGDTQFGDLLEDTSAI 243
>gi|40353311|gb|AAR84419.1| essential primary sigma 70 factor [Frankia sp. ACN14a]
Length = 214
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 9/167 (5%)
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
R +L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD
Sbjct: 16 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDY 75
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS +
Sbjct: 76 TKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPE 135
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ ++++ KVR ++ + +E SL GE H G
Sbjct: 136 EIAKEMDLTPDKVR-------EILKVSQEPV-SLETPIGEEEDSHLG 174
>gi|307721137|ref|YP_003892277.1| RNA polymerase sigma-70 subunit RpoD [Sulfurimonas autotrophica DSM
16294]
gi|306979230|gb|ADN09265.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfurimonas autotrophica
DSM 16294]
Length = 615
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+++ K+ SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG+K STY W
Sbjct: 375 ISKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATW 434
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR--LEEKGVTPSVDRIAEYLNMSQK 381
WIRQ +SRA+ + +RT+R+P H+ E + I N +R L+E G P VD IA+ + +S +
Sbjct: 435 WIRQAISRAIADQARTIRIPIHMIETINRI-NKIMRKHLQENGKEPDVDTIAKEVGLSVE 493
Query: 382 KVRNATEAIGKVFSLD 397
KV+N + + SL+
Sbjct: 494 KVKNVIKITKEPISLE 509
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+EKL+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY W
Sbjct: 190 VAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 249
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKK 382
WIRQ V+RAL +++RT+R+P H+ E + + + +L E G PS +A L+M+++K
Sbjct: 250 WIRQSVTRALADHARTIRVPVHMVETINRMSKMQRKLTLELGYEPSTKELATALDMTEEK 309
Query: 383 V 383
V
Sbjct: 310 V 310
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG E LAA +R
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLNTKKRLG-ESRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 132
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K + + G + + +AE
Sbjct: 133 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAE 192
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + E SLD
Sbjct: 193 ESGIPAEKIADLLEHSRDPVSLD 215
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 121/210 (57%), Gaps = 8/210 (3%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+Q+ + ++K + LLT E + L+ +++ ++L L++R E S+E + L
Sbjct: 7 LQDAVGRFLKIIGRYSLLTAEEELHLAHQVQRMMAL------LEQRRQHE-SLEDWSRRL 59
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
I ELQ IL + A++++V N+RLV+SIA+RY N G DL+Q G IGL R +EK
Sbjct: 60 GIPLEELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEK 119
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTP 367
FD ++G+K STY WWIRQ V+R + R +RLP H++E++ ++ L EKG P
Sbjct: 120 FDPTRGYKFSTYATWWIRQSVNRGIQNKGRLIRLPAHMYEKVSQVKRRYRELSAEKGSRP 179
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + + + L++ T + ++ SL+
Sbjct: 180 AAEEVFDSLDIGDNYRELITRHMAEIRSLN 209
>gi|357055215|ref|ZP_09116289.1| RNA polymerase sigma factor rpoD [Clostridium clostridioforme
2_1_49FAA]
gi|355383171|gb|EHG30257.1| RNA polymerase sigma factor rpoD [Clostridium clostridioforme
2_1_49FAA]
Length = 374
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 26/211 (12%)
Query: 214 LSKKIKTGLSLDDH-KLRLKE-----RLGCEPSMEQLAASLRISRPELQSILMECSLARE 267
L + G+SL+D ++ LKE LG E +E LA + + PE AR+
Sbjct: 90 LDLSVPEGVSLEDPVRMYLKEIGKIPLLGMEDEVE-LAKKMELGDPE----------ARK 138
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+L SN+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KG+K STY WWIRQ
Sbjct: 139 RLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQ 198
Query: 328 GVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 386
++RA+ + +RT+R+P H+ E + L+R ++ L+E G P+ + IA L++
Sbjct: 199 AITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARLDLP------- 251
Query: 387 TEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
E + ++ + +E SL GE H G
Sbjct: 252 VERVSEIMKMSQEPV-SLETPIGEEEDSHLG 281
>gi|386358237|ref|YP_006056483.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365808745|gb|AEW96961.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 498
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 202 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSSADKLA--PKLQR--------- 249
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 250 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 308
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 309 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 368
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 369 LAKELDMTPEKV 380
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 187
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++ P+ +
Sbjct: 188 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNEREL 247
Query: 373 AEYLNMS 379
AE L ++
Sbjct: 248 AEALEIT 254
>gi|455643217|gb|EMF22355.1| RNA polymerase sigma factor [Streptomyces gancidicus BKS 13-15]
Length = 509
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 213 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 260
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 261 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 319
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 320 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 379
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 380 LAKELDMTPEKV 391
>gi|260906542|ref|ZP_05914864.1| RNA polymerase principal sigma factor [Brevibacterium linens BL2]
Length = 473
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 119/208 (57%), Gaps = 22/208 (10%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
+ ++S + +K Y+K + LL AE V L+K+I+ G+
Sbjct: 165 QQVVSAGATADPVKDYLKQIGKVALLNAAEEVDLAKRIEAGMY----------------- 207
Query: 241 MEQLAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E L + I+ P + + I+ + +A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 208 AEHLLDAGGITEPRESMDYKWIIHDGRIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 267
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRN 355
G +GL+R +EKFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R
Sbjct: 268 EGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARV 327
Query: 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+ L++ G PS + +A+ L+M+ ++V
Sbjct: 328 QRQMLQDLGREPSPEELAKELDMTPERV 355
>gi|390564968|ref|ZP_10245695.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390171779|emb|CCF85025.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 329
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 116/204 (56%), Gaps = 19/204 (9%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + V LLTH E + S+ ++ GL ++R+ S E A EL
Sbjct: 43 YFRDVGGHRLLTHGEEIEYSRAVRAGLEA-------RKRV---DSGEDSA--------EL 84
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ IL AREKL+ N+RLV+SIA++Y G + DL+Q G IGL+ +E++D G+
Sbjct: 85 RMILERAKAAREKLIRHNLRLVVSIAKKYRASGLPLIDLIQEGNIGLMTAVERYDPELGY 144
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDR-IAE 374
+ STY +WIRQ + RA+ SRT+R+P H+H+ + +R + +LE+ P+ D+ +A+
Sbjct: 145 RFSTYATFWIRQAIGRAVANLSRTIRVPVHMHDLISKVRRTEAQLEQVHGRPATDQELAQ 204
Query: 375 YLNMSQKKVRNATEAIGKVFSLDR 398
L++ +++ A AI + SLD+
Sbjct: 205 ALDLDIERIEQARSAIPRTSSLDK 228
>gi|386773591|ref|ZP_10095969.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium
paraconglomeratum LC44]
Length = 437
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 115/192 (59%), Gaps = 8/192 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + ++L + S L +
Sbjct: 135 VKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDESYRDKNGRLTKAG 187
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL I + A++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 188 RELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYA 247
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 248 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 307
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 308 LAKELDMTPEKV 319
>gi|271968332|ref|YP_003342528.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Streptosporangium roseum DSM 43021]
gi|270511507|gb|ACZ89785.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Streptosporangium roseum DSM 43021]
Length = 561
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 117/194 (60%), Gaps = 13/194 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL + E+LG + ++L +R
Sbjct: 262 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAE-------EQLGTD--GDKLPVDVRA 312
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 313 ---ELEWIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 369
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 370 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 429
Query: 370 DRIAEYLNMSQKKV 383
+ +A L+M+ +KV
Sbjct: 430 EELARELDMTPEKV 443
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 26 YLNGIGKTALLTAADEVELAKRIEAGLYAQ-HLLATRKRLG-ENRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 132
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K + + G + + +AE
Sbjct: 133 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAE 192
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + E SLD
Sbjct: 193 ESGIPVEKINDLLEHSRDPVSLD 215
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 23/186 (12%)
Query: 235 LGCEPSMEQLAASLRISRPELQSILME-----CSLA-----------------REKLVMS 272
LG PS E+ A + +S EL+ IL + +LA +++++ +
Sbjct: 129 LGHRPSWEKWAKASEVSVFELKEILAQGKQQWATLANIDIQELEEIQKSGIRSKDEMIKA 188
Query: 273 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRA 332
N+RLV+S+A++Y + G ++ DL+Q G +GL + +EKFD KG++ STY YWWIRQG++RA
Sbjct: 189 NLRLVVSVAKKYQHRGLELLDLIQEGTLGLEKAVEKFDPIKGYRFSTYAYWWIRQGITRA 248
Query: 333 LVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391
+ SR +RLP H+ E+L I+ + ++ + KG +++ I + LNM+ +VR I
Sbjct: 249 IATQSRIIRLPVHVTEKLNKIKQVQRQISQAKGRNATLEEIGKELNMTPTQVREVFMKIP 308
Query: 392 KVFSLD 397
+ SL+
Sbjct: 309 RSVSLE 314
>gi|153306|gb|AAA26763.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450078|prf||1920369B RNA polymerase:SUBUNIT=sigma
Length = 525
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 229 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 276
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 277 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 335
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 336 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 395
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 396 LAKELDMTPEKV 407
>gi|297571337|ref|YP_003697111.1| RpoD subfamily RNA polymerase sigma-70 subunit [Arcanobacterium
haemolyticum DSM 20595]
gi|296931684|gb|ADH92492.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Arcanobacterium
haemolyticum DSM 20595]
Length = 510
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 111/192 (57%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL E V L+K+I+ GL + +E R
Sbjct: 214 VKDYLKQIGKVALLNAEEEVELAKRIEAGLF-------------AQHILETTTIDDPRKR 260
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 261 RELEIISRDGHKAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLVRAVEKFDYA 320
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+V+
Sbjct: 321 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTVEE 380
Query: 372 IAEYLNMSQKKV 383
+A L+M+++KV
Sbjct: 381 LAHELDMTEEKV 392
>gi|170782020|ref|YP_001710352.1| RNA polymerase sigma factor [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156588|emb|CAQ01739.1| putative RNA polymerase sigma factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 355
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 20/195 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 59 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 102
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 103 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKF 162
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 163 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 222
Query: 369 VDRIAEYLNMSQKKV 383
+ ++ L+M+ +KV
Sbjct: 223 PEELSRELDMTPEKV 237
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+K STY WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + SRT+RLP HL+E + I + KL +E P+ + IAE + M+ +K+
Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308
Query: 384 R 384
R
Sbjct: 309 R 309
>gi|239917829|ref|YP_002957387.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Micrococcus luteus NCTC
2665]
gi|281413678|ref|ZP_06245420.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family protein [Micrococcus
luteus NCTC 2665]
gi|239839036|gb|ACS30833.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Micrococcus luteus NCTC
2665]
Length = 497
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 25/255 (9%)
Query: 133 TDSPSKKTHKKVPVTCSGVSARQRRLNSKKKIL---SQNKSILQQNGSKQLRSMISPELI 189
+D+P + VT + + Q+ SK + S++ + +QQ ++
Sbjct: 146 SDAPERPAMDAEAVTGTTAATGQKVAQSKGAFVMDDSEDDAPVQQ--------VVVAGAT 197
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
+ +K Y+K + LL + V L+ +I+ GL E ++ A+
Sbjct: 198 ADPVKDYLKQIGKVALLNAEQEVDLAMRIEAGLY-------------AEHVVQHEASDDY 244
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
R ++Q I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 245 RERRDIQLIIADGRKAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 304
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 305 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 364
Query: 369 VDRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 365 PEELAKELDMTPEKV 379
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 124/211 (58%), Gaps = 8/211 (3%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL ++E +L ++R
Sbjct: 190 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVR- 248
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L++I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 249 --RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 306
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
SKG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L+E G P
Sbjct: 307 YSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQELGREP 364
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ +++ +++S++KV + + SLD+
Sbjct: 365 TPQELSKEMDISEEKVLEIQQYAREPISLDQ 395
>gi|22537572|ref|NP_688423.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae 2603V/R]
gi|25011538|ref|NP_735933.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae NEM316]
gi|76788342|ref|YP_330069.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae A909]
gi|77409561|ref|ZP_00786243.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae COH1]
gi|77412516|ref|ZP_00788814.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae CJB111]
gi|77414847|ref|ZP_00790961.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae 515]
gi|406709820|ref|YP_006764546.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae
GD201008-001]
gi|417005760|ref|ZP_11944353.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae FSL
S3-026]
gi|421146424|ref|ZP_15606138.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae GB00112]
gi|424049118|ref|ZP_17786669.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae ZQ0910]
gi|22534455|gb|AAN00296.1|AE014257_3 RNA polymerase sigma-70 factor [Streptococcus agalactiae 2603V/R]
gi|24413077|emb|CAD47155.1| RNA polymerase major sigma factor RpoD [Streptococcus agalactiae
NEM316]
gi|76563399|gb|ABA45983.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae A909]
gi|77159097|gb|EAO70294.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae 515]
gi|77161430|gb|EAO72443.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae CJB111]
gi|77171826|gb|EAO75013.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae COH1]
gi|341577573|gb|EGS27981.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae FSL
S3-026]
gi|389649318|gb|EIM70800.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae ZQ0910]
gi|401686884|gb|EJS82850.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae GB00112]
gi|406650705|gb|AFS46106.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae
GD201008-001]
Length = 369
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
ELQ L E AR++++ +N+RLV+++A++Y G ++ DLVQ G +GL R +EKFD ++
Sbjct: 125 ELQRRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTR 184
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
GF+ STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + E+G SV +
Sbjct: 185 GFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEQGRLASVSDL 244
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A+ L +S+ VR + + SL+
Sbjct: 245 AKELGVSEDTVRQTLARVPRSVSLE 269
>gi|219849586|ref|YP_002464019.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219543845|gb|ACL25583.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 314
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 18/205 (8%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + +E LLT + +L++ I G R ERL EPS+ + L
Sbjct: 18 YLNEIGAEPLLTFEQEQQLAQTIAQGR-------RAAERLTNEPSLHS------TEKKRL 64
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ + AR +L+ SN+RLV+SIA+RY G + DL+Q G IGL+R ++KFD+ +G
Sbjct: 65 AAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRGL 124
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE---EKGVTPSVDRI 372
K STY +WIRQ + RA+ ++SRT+RLP HL ERL R A+LR E + P+++ +
Sbjct: 125 KFSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLS--RLARLRQELAQQLDREPTLEEL 182
Query: 373 AEYLNMSQKKVRNATEAIGKVFSLD 397
A +S ++V A +A SLD
Sbjct: 183 ANAAGLSVEQVERAEQAGLAPTSLD 207
>gi|163848612|ref|YP_001636656.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222526547|ref|YP_002571018.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163669901|gb|ABY36267.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222450426|gb|ACM54692.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 381
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
R EL+ + + AR L+ +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD
Sbjct: 131 RFELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDY 190
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 370
KG K STY WWIRQ ++RA+ + SRT+RLP H+ E + ++ RL++ P+ +
Sbjct: 191 KKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQREPTPE 250
Query: 371 RIAEYLNMSQKKVRNATEAIGKVFSLD 397
IA+ + +S KVR EA SL+
Sbjct: 251 EIADAMGISAGKVRRTLEASMHPLSLE 277
>gi|345009804|ref|YP_004812158.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344036153|gb|AEM81878.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 502
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 206 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 253
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 254 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 312
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 313 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 372
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 373 LAKELDMTPEKV 384
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR--I 250
+K Y+K + + +LL E + L+++I+ + ++ + L+ +L P+ ++ A ++ +
Sbjct: 3 MKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGM 62
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+ +++ + A+ L SN+RLV+SIA+RY G +M DL Q G +GL R EKFD
Sbjct: 63 TVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEKFD 122
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSV 369
+GF+ STY WWI+QG+ RA+ + +RT+RLP H+H++L ++R A+ L+ E G +
Sbjct: 123 PERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATK 182
Query: 370 DRIAEYLNMSQKKV 383
+ +A + M K+
Sbjct: 183 EEVAAKVGMKPDKI 196
>gi|77406972|ref|ZP_00783989.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae H36B]
gi|77174413|gb|EAO77265.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae H36B]
Length = 369
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|266625476|ref|ZP_06118411.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288862622|gb|EFC94920.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 381
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY WW
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A+ L+MS+ KV
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELADALDMSEDKV 264
>gi|357412885|ref|YP_004924621.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010254|gb|ADW05104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 333
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 13/204 (6%)
Query: 184 ISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+ E+ L G Y+ + LL A+ V LS+ I+ G+ +++ + +E
Sbjct: 26 VGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV--------FAQQI-LDGVVE 76
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302
A + R EL++++ E A++ + SN+RLV+++A+RY G + DL+Q G GL
Sbjct: 77 SDAGGAK--REELEALVAESERAKDIFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGL 134
Query: 303 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-E 361
+R +EKFD +KGFK STY WWIRQ ++R++ + SRT+RLP HL E LG IR +
Sbjct: 135 VRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNR 194
Query: 362 EKGVTPSVDRIAEYLNMSQKKVRN 385
E G P IA L+ + ++V N
Sbjct: 195 EHGRDPEHTEIAAELDTNAERVGN 218
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +++ + + EL
Sbjct: 40 YLHEISRTPLLDAATEVDLSKAIEAGLY-------------AEHLLDEDRVPAGVEKAEL 86
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
Q ++ E + A++ + +N+RLV+SIA+RY G M DL+Q G GL+R +EKFD +GF
Sbjct: 87 QRLVAEGARAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYERGF 146
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WWIRQ +SRA+ + RT+RLP HL E + +RN +L E G P ++IA
Sbjct: 147 KFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSDPEPEQIAT 206
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L ++ ++V SLD
Sbjct: 207 ALGVTVERVNELVRWSQDTVSLD 229
>gi|419718484|ref|ZP_14245801.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305319|gb|EIC96687.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 407
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KGFK+STY WW
Sbjct: 170 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATWW 229
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A L+M+++KV
Sbjct: 230 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEKV 289
>gi|339301170|ref|ZP_08650285.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
agalactiae ATCC 13813]
gi|319745370|gb|EFV97681.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
agalactiae ATCC 13813]
Length = 380
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 141 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 200
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ K
Sbjct: 201 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 260
Query: 383 VR 384
VR
Sbjct: 261 VR 262
>gi|289706929|ref|ZP_06503266.1| RNA polymerase sigma factor RpoD [Micrococcus luteus SK58]
gi|289556364|gb|EFD49718.1| RNA polymerase sigma factor RpoD [Micrococcus luteus SK58]
Length = 509
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 25/255 (9%)
Query: 133 TDSPSKKTHKKVPVTCSGVSARQRRLNSKKKIL---SQNKSILQQNGSKQLRSMISPELI 189
+D+P + VT + + Q+ SK + S++ + +QQ ++
Sbjct: 158 SDAPERPAMDAEAVTGTKAATGQKVAQSKGAFVMDDSEDDAPVQQ--------VVVAGAT 209
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
+ +K Y+K + LL + V L+ +I+ GL E ++ A+
Sbjct: 210 ADPVKDYLKQIGKVALLNAEQEVDLAMRIEAGLY-------------AEHVVQHEASDDY 256
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
R ++Q I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 257 RERRDIQLIIADGRKAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 316
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 317 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 376
Query: 369 VDRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 377 PEELAKELDMTPEKV 391
>gi|156742920|ref|YP_001433049.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156234248|gb|ABU59031.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 348
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 139/248 (56%), Gaps = 24/248 (9%)
Query: 158 LNSKKKILSQNKSI----LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVR 213
L+ +++I++++ + +++ ++ L + P+ + ++ Y++ + LLT AE +
Sbjct: 13 LDERQEIVNEDDTAPVTDIEEMTAETLEETLEPDSTLDSIQHYLQEIGRVPLLTAAEEIE 72
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK---LV 270
L+++++ G + + RL S E L+ LR Q++L + + A+E L+
Sbjct: 73 LAERMERGAAAE-------RRLA---SGEDLSPQLR------QALLADVAAAQEARRHLI 116
Query: 271 MSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS 330
+N+RLV+SIA++Y G + DL+Q G IGL+R +EKFD KG + STY WWIRQ V+
Sbjct: 117 QANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAVEKFDYHKGNRFSTYATWWIRQAVT 176
Query: 331 RALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEA 389
RA+ E RT+RLP H+ E +G ++ RL + P+ + IA L +++ EA
Sbjct: 177 RAIAEQGRTIRLPVHMSESVGQVKRTADRLAQALERQPTPEEIATALGQPTERIERVLEA 236
Query: 390 IGKVFSLD 397
+ SL+
Sbjct: 237 SRRPVSLE 244
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L +RL + +L
Sbjct: 30 YLNGIGRTALLTAADEVELAKRIEAGLYAS-HVLATGKRLTVA------------KKRDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+I+ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 77 ATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 136
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L ++ G + D +AE
Sbjct: 137 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAE 196
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ K+ + + SLD
Sbjct: 197 ESGIPAHKIADLLDHSRDPVSLD 219
>gi|50726933|gb|AAT81163.1| principal sigma factor [Streptomyces ansochromogenes]
Length = 440
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 144 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 191
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 192 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 250
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 251 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 310
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 311 LAKELDMTPEKV 322
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 121/210 (57%), Gaps = 8/210 (3%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+Q+ + ++K + LLT E +RL+ +++ ++L L++R E S+E + L
Sbjct: 7 LQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTL------LEQRQPHE-SVEGWSQRL 59
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
I ELQ IL + A++++V N+RLV+SIA+RY N G DL+Q G IGL R +EK
Sbjct: 60 GIPLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEK 119
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTP 367
FD ++G+K STY WWIRQ V+R + R +RLP H++E++ ++ L E+G P
Sbjct: 120 FDPTRGYKFSTYATWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELSAERGSRP 179
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + + L++ T + ++ SL+
Sbjct: 180 QAEEVFDSLDIGDNYRELITRHMAEMRSLN 209
>gi|294631847|ref|ZP_06710407.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
gi|292835180|gb|EFF93529.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
Length = 515
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 325
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 326 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 385
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 386 LAKELDMTPEKV 397
>gi|156744261|ref|YP_001434390.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156235589|gb|ABU60372.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 399
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+ L+ +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD +KG K STY WW
Sbjct: 162 ARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWW 221
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + SRT+RLP H+ E + ++ A +L++ P+ + IA+ + +S KV
Sbjct: 222 IRQAITRAIADQSRTIRLPVHMGEAISQVKRASHKLQQMMQREPTPEEIADAMGISSTKV 281
Query: 384 RNATEAIGKVFSLD 397
R EA SL+
Sbjct: 282 RRTLEASMHPLSLE 295
>gi|312865945|ref|ZP_07726166.1| RNA polymerase sigma factor RpoD [Streptococcus downei F0415]
gi|311098349|gb|EFQ56572.1| RNA polymerase sigma factor RpoD [Streptococcus downei F0415]
Length = 338
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 98/155 (63%), Gaps = 9/155 (5%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 99 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 158
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ K
Sbjct: 159 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 218
Query: 383 VRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
VR ++ + +E SL GE H G
Sbjct: 219 VR-------EILKIAQEPV-SLETPIGEEDDSHLG 245
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 127/212 (59%), Gaps = 10/212 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+K+I+ GL H++ E+ E AA L
Sbjct: 185 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQ-HRMDEMEKARAEGDK---AAKLSP 240
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + +L+SI + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 241 MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 300
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVT 366
D +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G
Sbjct: 301 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGRE 358
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
P+ +A+ ++++++KV + + SLD+
Sbjct: 359 PTPQELAKEMDITEEKVMEIQQYAREPISLDQ 390
>gi|302537370|ref|ZP_07289712.1| RNA polymerase, subunit sigma [Streptomyces sp. C]
gi|302446265|gb|EFL18081.1| RNA polymerase, subunit sigma [Streptomyces sp. C]
Length = 526
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 230 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 277
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 278 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 336
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 337 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 396
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 397 LAKELDMTPEKV 408
>gi|222053802|ref|YP_002536164.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter daltonii
FRC-32]
gi|221563091|gb|ACM19063.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
daltonii FRC-32]
Length = 586
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 97/157 (61%), Gaps = 9/157 (5%)
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
LA+ +LV +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 346 AKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYA 405
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 380
WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E G PS + IAE +++
Sbjct: 406 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPL 465
Query: 381 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KVR KV + +E SL GE H G
Sbjct: 466 DKVR-------KVLKIAKEPI-SLETPIGEEEDSHLG 494
>gi|146295919|ref|YP_001179690.1| RpoD family RNA polymerase sigma-70 subunit [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409495|gb|ABP66499.1| RNA polymerase, sigma 70 subunit, RpoD family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 411
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 26/226 (11%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
V VSEE L ++ L + G+++DD ++ LKE +G P + E++ + RI +
Sbjct: 115 VDDRVSEEELLKDDLENLPE----GIAIDDPVRMYLKE-IGKIPLLTPEEEIELAKRIEQ 169
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + A+++L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD
Sbjct: 170 GDEE--------AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYR 221
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R ++ L+EKG P+ +
Sbjct: 222 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEE 281
Query: 372 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
IA+ +NM +KVR ++ + +E SL GE H G
Sbjct: 282 IAKEMNMPVEKVR-------EILKIAQEPV-SLETPIGEEEDSHLG 319
>gi|456387731|gb|EMF53221.1| hypothetical protein SBD_4764 [Streptomyces bottropensis ATCC
25435]
Length = 516
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 220 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 267
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 268 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 326
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 327 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 386
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 387 LAKELDMTPEKV 398
>gi|429199232|ref|ZP_19190999.1| RNA polymerase sigma factor RpoD [Streptomyces ipomoeae 91-03]
gi|428665067|gb|EKX64323.1| RNA polymerase sigma factor RpoD [Streptomyces ipomoeae 91-03]
Length = 476
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 180 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSNADKLA--PKLKR--------- 227
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 228 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 286
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 287 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 346
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 347 LAKELDMTPEKV 358
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 124/211 (58%), Gaps = 8/211 (3%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL ++E +L ++R
Sbjct: 186 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVR- 244
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L++I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 245 --RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 302
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
SKG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L+E G P
Sbjct: 303 YSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQELGREP 360
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ +++ +++S++KV + + SLD+
Sbjct: 361 TPQELSKEMDISEEKVLEIQQYAREPISLDQ 391
>gi|158522162|ref|YP_001530032.1| RpoD family RNA polymerase sigma factor [Desulfococcus oleovorans
Hxd3]
gi|158510988|gb|ABW67955.1| RNA polymerase, sigma 70 subunit, RpoD family [Desulfococcus
oleovorans Hxd3]
Length = 738
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
LR + ++ + ++ +L+ +N+RLV+SIA++Y N G DL+Q G +GL++ ++
Sbjct: 483 LRKTMKKIDDGYLRAKASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVD 542
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KF+ +G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E+G
Sbjct: 543 KFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYE 602
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
PS + IAE + + +KVR +V + RE SL GE H G
Sbjct: 603 PSPEEIAEKMEIPLEKVR-------RVLKIAREPI-SLETPIGEEEDSHLG 645
>gi|1519636|gb|AAB07551.1| SigA [Chloroflexus aurantiacus J-10-fl]
Length = 343
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 5/150 (3%)
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+R EL+ + + AR L+ +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD
Sbjct: 92 ARFELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFD 151
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE---EKGVTP 367
KG K STY WWIRQ ++RA+ + SRT+RLP H+ E + ++ RL+ ++ TP
Sbjct: 152 YKKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQRDATP 211
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ IA+ + +S KVR EA SL+
Sbjct: 212 --EEIADAMGISAGKVRRTLEASMHPLSLE 239
>gi|322387734|ref|ZP_08061343.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
infantis ATCC 700779]
gi|419843975|ref|ZP_14367280.1| RNA polymerase sigma factor RpoD [Streptococcus infantis ATCC
700779]
gi|321141601|gb|EFX37097.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
infantis ATCC 700779]
gi|385702399|gb|EIG39544.1| RNA polymerase sigma factor RpoD [Streptococcus infantis ATCC
700779]
Length = 369
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQEYGQEPTPEQIAEKMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 121/211 (57%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER P+ +
Sbjct: 272 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQ-------- 323
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 324 -RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 382
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 383 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 440
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 441 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 471
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 13/155 (8%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG + R EL
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLETRKRLGEK------------RRREL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ ++ + AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 73 EEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 132
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 350
K STY WWIRQ ++R + + SRT+RLP HL E++
Sbjct: 133 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 167
>gi|345848811|ref|ZP_08801829.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345639681|gb|EGX61170.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 512
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 216 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 263
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 264 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 322
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 323 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 382
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 383 LAKELDMTPEKV 394
>gi|315652381|ref|ZP_07905370.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485355|gb|EFU75748.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
Length = 410
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KGFK+STY WW
Sbjct: 173 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATWW 232
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A L+M+++KV
Sbjct: 233 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEKV 292
>gi|78212534|ref|YP_381313.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78196993|gb|ABB34758.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 309
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ +++ SN+RLV+++A+RY G D+ DL+Q G +GL R +EK+D ++G + STY YWW
Sbjct: 67 AKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYWW 126
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++RAL SRT+R+P +++E+L +R AK RL ++ G++PS +++AE++ + +V
Sbjct: 127 IRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARLMQRNGLSPSGEQLAEFMEIPIAEV 186
Query: 384 RN 385
+
Sbjct: 187 ED 188
>gi|33862253|ref|NP_893814.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634471|emb|CAE20156.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 339
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR++++ +N+RLV+S+A++Y N G D+ DLVQ G IGL R ++KFD + G+K STY YWW
Sbjct: 105 ARDRMMSANLRLVVSVAKKYQNQGLDLLDLVQEGAIGLERAVDKFDPAMGYKFSTYAYWW 164
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++RA+ ++RT+RLP H+ E+L +R L +K G P+ +A + + QK +
Sbjct: 165 IRQGMTRAIDNSARTIRLPIHISEKLSKMRRVSRELSQKSGRQPTRLEMATAMGIEQKDL 224
Query: 384 RNATEAIGKVFSLDREA 400
+ SLD A
Sbjct: 225 EDLISQSAPCASLDAHA 241
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E + L+ ++ + + + +L E L P+ Q A ++ S+
Sbjct: 66 AFFKEMSRYPLLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQR 125
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+ ++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 126 QFENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 185
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K P+ +
Sbjct: 186 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKEL 245
Query: 373 AEYLNMS 379
A+ L M+
Sbjct: 246 AQELEMT 252
>gi|37522577|ref|NP_925954.1| group 2 sigma 70-type sigma factor [Gloeobacter violaceus PCC 7421]
gi|35213578|dbj|BAC90949.1| group 2 sigma 70-type sigma factor [Gloeobacter violaceus PCC 7421]
Length = 305
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
E A+ +LV +N+RLV+SIA++Y N G DL+Q G IGL+R EKFD +GFK STY
Sbjct: 63 EAEAAKRRLVRANLRLVVSIAKKYLNRGVPFLDLIQEGAIGLMRAAEKFDFERGFKFSTY 122
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMS 379
YWWIRQG++RA+ SRT+RLP H+ E+L ++ + +L +E P+ +AE L +
Sbjct: 123 AYWWIRQGITRAIASQSRTVRLPVHMVEKLNQVKRVRRQLTQELARKPTKPEMAEALELD 182
Query: 380 QKKVRNATEAIGKVFSL 396
K+ +A + SL
Sbjct: 183 IDKLDEILDAGRRTLSL 199
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 114/199 (57%), Gaps = 31/199 (15%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPEL----------------------QSILMECSLARE 267
+L RL PS+E+ A + +IS EL + I+ + A+E
Sbjct: 139 QLTARLAHRPSLERWAKTAQISVSELKNALKAGKQRWAHLAGLEVGELEEIIALGTRAKE 198
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +KG++ STY YWWIRQ
Sbjct: 199 QMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 258
Query: 328 GVS--------RALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNM 378
G++ R + SR +RLP H+ E+L I+ A+ ++ + +G T +V+ IA+ L +
Sbjct: 259 GMTIAVATRSLREIATQSRMIRLPVHITEKLNKIKKAQRKISQIRGRTATVEEIAQELAV 318
Query: 379 SQKKVRNATEAIGKVFSLD 397
+ + VR + + SL+
Sbjct: 319 TPEAVREVLMTVPRSVSLE 337
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 127/212 (59%), Gaps = 10/212 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+K+I+ GL H++ E+ E AA L
Sbjct: 184 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQ-HRMDEMEKARAEGDK---AAKLSP 239
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + +L+SI + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 240 MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 299
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVT 366
D +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G
Sbjct: 300 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGRE 357
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
P+ +A+ ++++++KV + + SLD+
Sbjct: 358 PTPQELAKEMDITEEKVMEIQQYAREPISLDQ 389
>gi|289167835|ref|YP_003446104.1| DNA-dependent RNA Polymerase sigma factor rpoD [Streptococcus mitis
B6]
gi|288907402|emb|CBJ22239.1| DNA-dependent RNA Polymerase sigma factor rpoD [Streptococcus mitis
B6]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQEYGQEPTPEQIAEKMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|297191610|ref|ZP_06909008.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
gi|297151002|gb|EFH30922.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
Length = 516
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 220 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 267
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 268 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 326
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 327 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 386
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 387 LAKELDMTPEKV 398
>gi|29828986|ref|NP_823620.1| RNA polymerase sigma factor [Streptomyces avermitilis MA-4680]
gi|29606091|dbj|BAC70155.1| RNA polymerase major sigma factor, sigma-70 family [Streptomyces
avermitilis MA-4680]
Length = 512
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 216 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 263
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 264 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 322
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 323 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 382
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 383 LAKELDMTPEKV 394
>gi|411006265|ref|ZP_11382594.1| RNA polymerase sigma factor [Streptomyces globisporus C-1027]
Length = 515
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 325
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 326 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 385
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 386 LAKELDMTPEKV 397
>gi|386843002|ref|YP_006248060.1| RNA polymerase sigma factor RpoD [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103303|gb|AEY92187.1| RNA polymerase sigma factor RpoD [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796293|gb|AGF66342.1| RNA polymerase sigma factor RpoD [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 513
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 217 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 264
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 265 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 323
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 324 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 383
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 384 LAKELDMTPEKV 395
>gi|443623591|ref|ZP_21108088.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443342834|gb|ELS56979.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 511
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 215 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSNADKLA--PKLKR--------- 262
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 263 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 321
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 322 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 381
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 382 LAKELDMTPEKV 393
>gi|307709167|ref|ZP_07645626.1| RNA polymerase sigma factor rpoD [Streptococcus mitis SK564]
gi|417850192|ref|ZP_12496106.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK1080]
gi|307620113|gb|EFN99230.1| RNA polymerase sigma factor rpoD [Streptococcus mitis SK564]
gi|339455035|gb|EGP67646.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK1080]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 121/211 (57%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER P+ +
Sbjct: 274 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQ-------- 325
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 326 -RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 384
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 385 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 442
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 443 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 473
>gi|182435494|ref|YP_001823213.1| RNA polymerase sigma factor [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326776131|ref|ZP_08235396.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|11132962|sp|P77951.1|HRDB_STRGR RecName: Full=RNA polymerase principal sigma factor HrdB
gi|1617256|gb|AAB16905.1| principal sigma factor [Streptomyces griseus]
gi|178464010|dbj|BAG18530.1| RNA polymerase principal sigma factor hrdB [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326656464|gb|EGE41310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 514
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 218 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 265
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 266 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 324
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 325 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 384
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 385 LAKELDMTPEKV 396
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 127/211 (60%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++R E G E+L +R
Sbjct: 174 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RVRTAEEEG-----EKLVTQMR- 226
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 227 --RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 284
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 285 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 342
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ +++S +KV + + SLD+
Sbjct: 343 TPEELAKEMDISPEKVLEIQQYAREPISLDQ 373
>gi|402838551|ref|ZP_10887056.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
gi|402272765|gb|EJU21981.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
Length = 492
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K+V +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 255 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 314
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + LIR + ++E G P D IAE +NM Q+K
Sbjct: 315 IRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEK- 373
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
I ++ + +E SL GE H G
Sbjct: 374 ------IMEIMKIAQEPV-SLETPIGEEEDSHLG 400
>gi|262199546|ref|YP_003270755.1| RpoD subfamily RNA polymerase sigma-70 subunit [Haliangium
ochraceum DSM 14365]
gi|262082893|gb|ACY18862.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Haliangium
ochraceum DSM 14365]
Length = 697
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
C S+E+L + R E+ A+ +LV +N+RLV+SIA++Y N G DL+Q
Sbjct: 435 CRSSVEELRQTFR----EMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQ 490
Query: 297 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRN 355
G IGL++ ++KF+ +G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R
Sbjct: 491 EGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRT 550
Query: 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIH 415
++ ++E G P+ + IAE + + KVR KV + +E SL GE H
Sbjct: 551 SRYLVQELGREPTPEEIAERMELPLDKVR-------KVLKIAKEPI-SLETPIGEEEDSH 602
Query: 416 CG 417
G
Sbjct: 603 LG 604
>gi|440696490|ref|ZP_20878956.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
gi|440281287|gb|ELP68923.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
Length = 511
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 215 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 262
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 263 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 321
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 322 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 381
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 382 LAKELDMTPEKV 393
>gi|398781886|ref|ZP_10545827.1| RNA polymerase sigma factor, partial [Streptomyces auratus AGR0001]
gi|396997124|gb|EJJ08095.1| RNA polymerase sigma factor, partial [Streptomyces auratus AGR0001]
Length = 399
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 118/194 (60%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 101 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR------- 150
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 151 ---ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 207
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 208 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 267
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 268 EELAKELDMTPEKV 281
>gi|383639250|ref|ZP_09951656.1| RNA polymerase sigma factor [Streptomyces chartreusis NRRL 12338]
Length = 512
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 216 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSNADKLA--PKLKR--------- 263
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 264 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 322
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 323 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 382
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 383 LAKELDMTPEKV 394
>gi|342163695|ref|YP_004768334.1| RNA polymerase sigma factor RpoD [Streptococcus pseudopneumoniae
IS7493]
gi|341933577|gb|AEL10474.1| RNA polymerase sigma factor RpoD [Streptococcus pseudopneumoniae
IS7493]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|164688099|ref|ZP_02212127.1| hypothetical protein CLOBAR_01744 [Clostridium bartlettii DSM
16795]
gi|164602512|gb|EDQ95977.1| RNA polymerase sigma factor RpoD [Clostridium bartlettii DSM 16795]
Length = 385
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 120/193 (62%), Gaps = 16/193 (8%)
Query: 199 GVVSEELLTH--AEVVRLSKKIKTGLSLDDH-KLRLKERLGCEPSM---EQLAASLRISR 252
GV +EL E+ ++ + G+S+DD ++ LKE +G P + E++ + R+
Sbjct: 85 GVSDDELKKEDDIEMDKIDLSLPKGISIDDPVRMYLKE-IGKIPLLKPHEEIEYAKRM-- 141
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
L +A+++LV +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD
Sbjct: 142 ------LEGDEIAKQRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYE 195
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
+GFK STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ L+E G P +
Sbjct: 196 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEE 255
Query: 372 IAEYLNMSQKKVR 384
IA+ ++MS++KVR
Sbjct: 256 IAKEMDMSEEKVR 268
>gi|441150033|ref|ZP_20965405.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440619376|gb|ELQ82425.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 516
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 118/194 (60%), Gaps = 14/194 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 218 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR------- 267
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 268 ---ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 324
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 325 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 384
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ L+M+ +KV
Sbjct: 385 EELAKELDMTPEKV 398
>gi|385262076|ref|ZP_10040191.1| RNA polymerase sigma factor RpoD [Streptococcus sp. SK643]
gi|385191817|gb|EIF39229.1| RNA polymerase sigma factor RpoD [Streptococcus sp. SK643]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|297202863|ref|ZP_06920260.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297148238|gb|EDY59236.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 512
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 216 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 263
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 264 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 322
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 323 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 382
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 383 LAKELDMTPEKV 394
>gi|194397936|ref|YP_002037704.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae G54]
gi|194357603|gb|ACF56051.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae G54]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|293365255|ref|ZP_06611972.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
oralis ATCC 35037]
gi|306829363|ref|ZP_07462553.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus mitis
ATCC 6249]
gi|417933777|ref|ZP_12577097.1| RNA polymerase sigma factor RpoD [Streptococcus mitis bv. 2 str.
F0392]
gi|419782714|ref|ZP_14308512.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK610]
gi|291316705|gb|EFE57141.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
oralis ATCC 35037]
gi|304428449|gb|EFM31539.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus mitis
ATCC 6249]
gi|340770347|gb|EGR92862.1| RNA polymerase sigma factor RpoD [Streptococcus mitis bv. 2 str.
F0392]
gi|383182927|gb|EIC75475.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK610]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|238060708|ref|ZP_04605417.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
gi|237882519|gb|EEP71347.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
Length = 331
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +E + R +L
Sbjct: 40 YLHEISRTPLLDAATEVDLSKSIEAGLY-------------AEHLLETDRVPAGVDRDDL 86
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ + E A++ + +N+RLV+SIA+RY G M DL+Q G GL+R +EKFD +GF
Sbjct: 87 ERVAAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYERGF 146
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WWIRQ +SRA+ + RT+RLP HL E + +RNA +L E G P ++IA
Sbjct: 147 KFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNAARQLTRELGSDPEPEQIAA 206
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
L ++ ++V SLD
Sbjct: 207 ALGVTVERVNELVRWSQDTVSLD 229
>gi|291454591|ref|ZP_06593981.1| RNA polymerase sigma factor RpoD [Streptomyces albus J1074]
gi|421739610|ref|ZP_16177914.1| RNA polymerase, sigma 70 subunit, RpoD [Streptomyces sp. SM8]
gi|581664|emb|CAA53564.1| sigma factor (RNA polymerase subunit) [Streptomyces griseus]
gi|291357540|gb|EFE84442.1| RNA polymerase sigma factor RpoD [Streptomyces albus J1074]
gi|406692020|gb|EKC95737.1| RNA polymerase, sigma 70 subunit, RpoD [Streptomyces sp. SM8]
Length = 510
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL +++ P +++
Sbjct: 214 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKIA--PKLKR--------- 261
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 262 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 320
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 321 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 380
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 381 LAKELDMTPEKV 392
>gi|381397349|ref|ZP_09922761.1| RNA polymerase sigma factor RpoD [Microbacterium laevaniformans
OR221]
gi|380775334|gb|EIC08626.1| RNA polymerase sigma factor RpoD [Microbacterium laevaniformans
OR221]
Length = 443
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 114/194 (58%), Gaps = 16/194 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL E + ++AS + S+
Sbjct: 145 VKDYLKQIGKVPLLNAAEEVELAMRIEAGLF-------------AEEKLSHMSASEKSSQ 191
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+LQ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 192 LGLDLQWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFD 251
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 252 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 311
Query: 370 DRIAEYLNMSQKKV 383
+ ++ L+M+ +KV
Sbjct: 312 EELSRELDMTPEKV 325
>gi|322376488|ref|ZP_08050981.1| RNA polymerase sigma-70 factor [Streptococcus sp. M334]
gi|321282295|gb|EFX59302.1| RNA polymerase sigma-70 factor [Streptococcus sp. M334]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|404483026|ref|ZP_11018251.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344116|gb|EJZ70475.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 410
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KGFK+STY WW
Sbjct: 173 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATWW 232
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A L+M+++KV
Sbjct: 233 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEKV 292
>gi|358068536|ref|ZP_09154998.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
gi|356693353|gb|EHI55032.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
Length = 427
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++KL+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KGFK+STY WW
Sbjct: 191 AKQKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATWW 250
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L + G PSV +A+ L+M+ +KV
Sbjct: 251 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLQLGYEPSVSELAKALDMTDEKV 310
>gi|290956933|ref|YP_003488115.1| major vegetative sigma factor HrdB [Streptomyces scabiei 87.22]
gi|260646459|emb|CBG69556.1| major vegetative sigma factor HrdB [Streptomyces scabiei 87.22]
Length = 516
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 220 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 267
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 268 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 326
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 327 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 386
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 387 LAKELDMTPEKV 398
>gi|271962349|ref|YP_003336545.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270505524|gb|ACZ83802.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 324
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 128/217 (58%), Gaps = 18/217 (8%)
Query: 170 SILQQNGSKQLRSMISPEL--IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDH 227
S L Q G + L +++ E+ + ++ Y++ + LLT + V L+++++ GL
Sbjct: 5 STLTQTGDEVL-TLLKAEMGATADPVRDYLRQIARIPLLTAGQEVELARRVEAGLFA--- 60
Query: 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM 287
+ERLG E L A+LR EL+ + + A+++ V +N+RLV+SIA+R+
Sbjct: 61 ----RERLGAE----GLPAALR---AELECVADDGRRAKDRFVEANLRLVVSIAKRHAGR 109
Query: 288 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLH 347
G + DL+Q G +GL+R +EKFD GFK STY WWI+Q ++RA+ + +RT+R+P H+
Sbjct: 110 GVPLLDLIQEGNLGLIRAVEKFDHRLGFKFSTYATWWIKQAITRAMADQARTVRVPVHMV 169
Query: 348 ERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
E + + R + L + G P+ + IA L+++ +KV
Sbjct: 170 EMINKVARVERQLLCDLGREPTPEEIAAELDLTPEKV 206
>gi|404393633|ref|ZP_10985559.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
gi|404278859|gb|EJZ44345.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
Length = 492
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K+V +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 255 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 314
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + LIR + ++E G P D IAE +NM Q+K
Sbjct: 315 IRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEK- 373
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
I ++ + +E SL GE H G
Sbjct: 374 ------IMEIMKIAQEPV-SLETPIGEEEDSHLG 400
>gi|374992526|ref|YP_004968021.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297163178|gb|ADI12890.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 336
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 18/185 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT + V L+K+I+ GL + +L L+ER G + R SR
Sbjct: 39 VKDYLKLIARVRLLTAEQEVDLAKRIEAGLYAE--RL-LRERPGLD----------RHSR 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL ++ + A+ LV +N+RLV+S+A+RY G DL+Q G GL+R EKFD +
Sbjct: 86 GELGALAEDGHRAKTHLVEANLRLVVSVAKRYTGRGLAFLDLIQEGNTGLIRAAEKFDYA 145
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE---EKGVTPSV 369
KGFK STY WWI+Q VSRAL + SRT+R+P H E + R A++R E + G P+
Sbjct: 146 KGFKFSTYATWWIKQAVSRALADQSRTIRVPVHTVELIN--RIARVRRELILDTGAEPTP 203
Query: 370 DRIAE 374
+++AE
Sbjct: 204 EQVAE 208
>gi|408528831|emb|CCK27005.1| RNA polymerase principal sigma factor hrdB [Streptomyces davawensis
JCM 4913]
Length = 511
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 215 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 262
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 263 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 321
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 322 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 381
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 382 LAKELDMTPEKV 393
>gi|383807441|ref|ZP_09963001.1| RNA polymerase sigma factor [Candidatus Aquiluna sp. IMCC13023]
gi|383298795|gb|EIC91410.1| RNA polymerase sigma factor [Candidatus Aquiluna sp. IMCC13023]
Length = 412
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 114/192 (59%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL V L+K+I+ GL +D +L E +LA + R
Sbjct: 115 VKDYLKQIGKVALLNAELEVELAKRIEAGLFAED-------KLATE---SKLAPA---DR 161
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L ++ + ++ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 162 RDLNWVVKDGKRSKSHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYT 221
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ D
Sbjct: 222 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQLLQDLGREPTPDE 281
Query: 372 IAEYLNMSQKKV 383
+A L+M+ +KV
Sbjct: 282 LAAELDMTPEKV 293
>gi|307705133|ref|ZP_07642010.1| RNA polymerase sigma factor rpoD [Streptococcus mitis SK597]
gi|307621329|gb|EFO00389.1| RNA polymerase sigma factor rpoD [Streptococcus mitis SK597]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|374986056|ref|YP_004961551.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297156708|gb|ADI06420.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 515
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 325
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 326 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 385
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 386 LAKELDMTPEKV 397
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 109/192 (56%), Gaps = 31/192 (16%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSL--------DDHKLRLKERLGCEPSMEQLAAS 247
Y+ + LLT AE + L +++ ++L +DH+L K+R
Sbjct: 23 YLATIGRIPLLTPAEEIELGNQVQAMMTLTEDGSKTFEDHELTGKQR-----------RM 71
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
LRI R A+E+++ +N+RLV+S+A++Y G ++ DL+Q G +GL R +E
Sbjct: 72 LRIGRR-----------AKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE 120
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVT 366
KFD ++G+K STY +WWIRQ ++RA+ SRT+RLP HL ERL IR L L K G
Sbjct: 121 KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAM 180
Query: 367 PSVDRIAEYLNM 378
PS IAE +++
Sbjct: 181 PSRVEIAEAMDI 192
>gi|239991260|ref|ZP_04711924.1| RNA polymerase sigma factor [Streptomyces roseosporus NRRL 11379]
Length = 515
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 325
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 326 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 385
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 386 LAKELDMTPEKV 397
>gi|453051027|gb|EME98546.1| RNA polymerase sigma factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 516
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 220 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 267
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 268 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 326
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 327 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 386
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 387 LAKELDMTPEKV 398
>gi|385652975|ref|ZP_10047528.1| RNA polymerase sigma factor [Leucobacter chromiiresistens JG 31]
Length = 404
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 117/199 (58%), Gaps = 14/199 (7%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + +K Y+K + LL AE V L+ +I+ GL + E+L E + +
Sbjct: 101 PGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAE-------EKLSTEKGLPK-- 151
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305
++ R EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R
Sbjct: 152 ---KLER-ELKWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRA 207
Query: 306 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKG 364
+EKFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G
Sbjct: 208 VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLG 267
Query: 365 VTPSVDRIAEYLNMSQKKV 383
P+ + ++ L+M+ +KV
Sbjct: 268 REPTPEELSRELDMTPEKV 286
>gi|373468298|ref|ZP_09559555.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371766389|gb|EHO54644.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 410
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KGFK+STY WW
Sbjct: 173 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATWW 232
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A L+M+++KV
Sbjct: 233 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEKV 292
>gi|417915154|ref|ZP_12558775.1| RNA polymerase sigma factor RpoD [Streptococcus mitis bv. 2 str.
SK95]
gi|342835268|gb|EGU69519.1| RNA polymerase sigma factor RpoD [Streptococcus mitis bv. 2 str.
SK95]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|270292885|ref|ZP_06199096.1| RNA polymerase sigma-70 factor [Streptococcus sp. M143]
gi|306825379|ref|ZP_07458719.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|315613017|ref|ZP_07887928.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
sanguinis ATCC 49296]
gi|322374450|ref|ZP_08048964.1| RNA polymerase sigma-70 factor [Streptococcus sp. C300]
gi|331266528|ref|YP_004326158.1| RNA polymerase sigma factor RpoD [Streptococcus oralis Uo5]
gi|401683403|ref|ZP_10815289.1| RNA polymerase sigma factor RpoD [Streptococcus sp. BS35b]
gi|406576460|ref|ZP_11052089.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD6S]
gi|406586450|ref|ZP_11061381.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD1S]
gi|414158353|ref|ZP_11414647.1| RNA polymerase sigma factor rpoD [Streptococcus sp. F0441]
gi|417794250|ref|ZP_12441508.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK255]
gi|418974693|ref|ZP_13522602.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK1074]
gi|419778983|ref|ZP_14304864.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK10]
gi|419813671|ref|ZP_14338484.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD2S]
gi|419817680|ref|ZP_14341829.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD4S]
gi|421488962|ref|ZP_15936350.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK304]
gi|270278864|gb|EFA24710.1| RNA polymerase sigma-70 factor [Streptococcus sp. M143]
gi|304432317|gb|EFM35293.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|315315127|gb|EFU63168.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
sanguinis ATCC 49296]
gi|321279950|gb|EFX56989.1| RNA polymerase sigma-70 factor [Streptococcus sp. C300]
gi|326683200|emb|CBZ00818.1| RNA polymerase sigma factor RpoD (sigma-70 factor, Sigma-A)
[Streptococcus oralis Uo5]
gi|334270094|gb|EGL88501.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK255]
gi|383186747|gb|EIC79212.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK10]
gi|383348064|gb|EID26023.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK1074]
gi|400187481|gb|EJO21675.1| RNA polymerase sigma factor RpoD [Streptococcus sp. BS35b]
gi|400368179|gb|EJP21194.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK304]
gi|404461467|gb|EKA07398.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD6S]
gi|404465611|gb|EKA11029.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD4S]
gi|404472782|gb|EKA17197.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD2S]
gi|404474130|gb|EKA18450.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD1S]
gi|410870898|gb|EKS18855.1| RNA polymerase sigma factor rpoD [Streptococcus sp. F0441]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|183220954|ref|YP_001838950.1| RNA polymerase sigma factor RpoD [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911049|ref|YP_001962604.1| DNA-directed RNA polymerase sigma sigma70/sigma32 subunit
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775725|gb|ABZ94026.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167779376|gb|ABZ97674.1| RNA polymerase sigma factor rpoD (Sigma-70) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 590
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
E + A+ +LV +N+RLV+SIA+RY N G DL+Q G IGL+R ++KF+ KG+K STY
Sbjct: 349 EIAQAKRELVRANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIRAVDKFEYKKGYKFSTY 408
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 379
WWIRQ ++RA+ + +RT+R+P H+ E++ +IR +L ++E G PS D IAE L
Sbjct: 409 ATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNDEIAERLGWP 468
Query: 380 QKKVR 384
+KV+
Sbjct: 469 VQKVK 473
>gi|402312660|ref|ZP_10831584.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400369118|gb|EJP22121.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 410
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KGFK+STY WW
Sbjct: 173 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATWW 232
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A L+M+++KV
Sbjct: 233 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEKV 292
>gi|358464783|ref|ZP_09174741.1| RNA polymerase sigma factor RpoD [Streptococcus sp. oral taxon 058
str. F0407]
gi|419780173|ref|ZP_14306023.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK100]
gi|357066312|gb|EHI76462.1| RNA polymerase sigma factor RpoD [Streptococcus sp. oral taxon 058
str. F0407]
gi|383185332|gb|EIC77828.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK100]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 111/191 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
K +++ + E LT E L KI+ + +++ +L+ + G EP++ + A ++ +S
Sbjct: 261 FKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSS 320
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQS + REK+ SN RLV+ +A++Y+ G D+ DLVQ G GL++ EKF+ S
Sbjct: 321 KELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPS 380
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRI 372
KG + TY YWWIRQ + +++ +NSR +RLP ++ L + A++ +G P+ +
Sbjct: 381 KGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQPTNANV 440
Query: 373 AEYLNMSQKKV 383
A ++ +K+
Sbjct: 441 ARRAGITIEKL 451
>gi|408793927|ref|ZP_11205532.1| RNA polymerase sigma factor RpoD [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408461162|gb|EKJ84892.1| RNA polymerase sigma factor RpoD [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 590
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
E + A+ +LV +N+RLV+SIA+RY N G DL+Q G IGL+R ++KF+ KG+K STY
Sbjct: 349 EIAQAKRELVRANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIRAVDKFEYKKGYKFSTY 408
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 379
WWIRQ ++RA+ + +RT+R+P H+ E++ +IR +L ++E G PS D IAE L
Sbjct: 409 ATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNDEIAERLGWP 468
Query: 380 QKKVR 384
+KV+
Sbjct: 469 VQKVK 473
>gi|309800318|ref|ZP_07694490.1| RNA polymerase sigma factor RpoD [Streptococcus infantis SK1302]
gi|385261367|ref|ZP_10039492.1| RNA polymerase sigma factor RpoD [Streptococcus sp. SK140]
gi|308116065|gb|EFO53569.1| RNA polymerase sigma factor RpoD [Streptococcus infantis SK1302]
gi|385188369|gb|EIF35855.1| RNA polymerase sigma factor RpoD [Streptococcus sp. SK140]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|307706485|ref|ZP_07643293.1| RNA polymerase sigma factor rpoD [Streptococcus mitis SK321]
gi|307708623|ref|ZP_07645087.1| RNA polymerase sigma factor RpoD [Streptococcus mitis NCTC 12261]
gi|417924752|ref|ZP_12568183.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK569]
gi|418967633|ref|ZP_13519287.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK616]
gi|418976336|ref|ZP_13524215.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK575]
gi|307615372|gb|EFN94581.1| RNA polymerase sigma factor RpoD [Streptococcus mitis NCTC 12261]
gi|307618125|gb|EFN97284.1| RNA polymerase sigma factor rpoD [Streptococcus mitis SK321]
gi|342835397|gb|EGU69640.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK569]
gi|383343293|gb|EID21482.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK616]
gi|383351610|gb|EID29391.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK575]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|379705528|ref|YP_005203987.1| RNA polymerase major sigma factor [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682227|gb|AEZ62516.1| RNA polymerase major sigma factor [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 369
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|323359909|ref|YP_004226305.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Microbacterium testaceum StLB037]
gi|323276280|dbj|BAJ76425.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Microbacterium testaceum StLB037]
Length = 436
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 114/194 (58%), Gaps = 16/194 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL E + ++A+ + S+
Sbjct: 138 VKDYLKQIGKVPLLNAAEEVELAMRIEAGLF-------------AEEKLSNMSAAEKTSQ 184
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
+LQ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 185 LGLDLQWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFD 244
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSV 369
+KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 245 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 304
Query: 370 DRIAEYLNMSQKKV 383
+ ++ L+M+ +KV
Sbjct: 305 EELSRELDMTPEKV 318
>gi|408826473|ref|ZP_11211363.1| RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738]
Length = 507
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 211 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 258
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 259 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 317
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 318 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 377
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 378 LAKELDMTPEKV 389
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ER P+ +
Sbjct: 199 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLPAAQ-------- 250
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 251 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 309
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 310 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 367
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 368 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 398
>gi|418236598|ref|ZP_12863166.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19690]
gi|353892830|gb|EHE72578.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19690]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|347951690|gb|AEP32981.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951692|gb|AEP32982.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951694|gb|AEP32983.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951696|gb|AEP32984.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951698|gb|AEP32985.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951700|gb|AEP32986.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951702|gb|AEP32987.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951704|gb|AEP32988.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951706|gb|AEP32989.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951708|gb|AEP32990.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951710|gb|AEP32991.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951712|gb|AEP32992.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951714|gb|AEP32993.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951716|gb|AEP32994.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951718|gb|AEP32995.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951720|gb|AEP32996.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951722|gb|AEP32997.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951724|gb|AEP32998.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951726|gb|AEP32999.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951728|gb|AEP33000.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951730|gb|AEP33001.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951732|gb|AEP33002.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951734|gb|AEP33003.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951736|gb|AEP33004.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951738|gb|AEP33005.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951740|gb|AEP33006.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951742|gb|AEP33007.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951744|gb|AEP33008.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951746|gb|AEP33009.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951748|gb|AEP33010.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951750|gb|AEP33011.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951752|gb|AEP33012.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951754|gb|AEP33013.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951756|gb|AEP33014.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951758|gb|AEP33015.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951760|gb|AEP33016.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951762|gb|AEP33017.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951764|gb|AEP33018.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951766|gb|AEP33019.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951768|gb|AEP33020.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951770|gb|AEP33021.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951772|gb|AEP33022.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951774|gb|AEP33023.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951776|gb|AEP33024.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951778|gb|AEP33025.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951780|gb|AEP33026.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951782|gb|AEP33027.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951784|gb|AEP33028.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951786|gb|AEP33029.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951788|gb|AEP33030.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951790|gb|AEP33031.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951792|gb|AEP33032.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951794|gb|AEP33033.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951796|gb|AEP33034.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951798|gb|AEP33035.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951800|gb|AEP33036.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951802|gb|AEP33037.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951804|gb|AEP33038.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951806|gb|AEP33039.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951808|gb|AEP33040.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951810|gb|AEP33041.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951812|gb|AEP33042.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951814|gb|AEP33043.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951816|gb|AEP33044.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951818|gb|AEP33045.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951820|gb|AEP33046.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951832|gb|AEP33052.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
nebraskensis]
gi|347951834|gb|AEP33053.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
nebraskensis]
gi|347951836|gb|AEP33054.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
tessellarius]
gi|347951838|gb|AEP33055.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
tessellarius]
Length = 265
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 20/195 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 19 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 62
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 63 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKF 122
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 123 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 182
Query: 369 VDRIAEYLNMSQKKV 383
+ ++ L+M+ +KV
Sbjct: 183 PEELSRELDMTPEKV 197
>gi|325677627|ref|ZP_08157279.1| RNA polymerase sigma factor RpoD [Ruminococcus albus 8]
gi|324110595|gb|EGC04759.1| RNA polymerase sigma factor RpoD [Ruminococcus albus 8]
Length = 366
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 18/173 (10%)
Query: 221 GLSLDDH-KLRLKERLGCEPSMEQLAASLRISRPELQSILM-------ECSLAREKLVMS 272
G+++DD K+ LKE +G P L S E+Q M + S AR++L +
Sbjct: 86 GIAIDDPVKIYLKE-IGRVP--------LLTSEEEIQLAEMMSGDNDRDASKARKRLAEA 136
Query: 273 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRA 332
N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGFK STY WWIRQ ++RA
Sbjct: 137 NLRLVVSIAKRYVGRGMSFLDLIQEGNMGLIKAVEKFDYKKGFKFSTYATWWIRQAITRA 196
Query: 333 LVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVR 384
+ + +RT+R+P H+ E + ++ A +L K G PS + IAE L+MS +KVR
Sbjct: 197 IADQARTIRIPVHMVETITKVKKASSQLLHKNGHDPSPEEIAEDLDMSVEKVR 249
>gi|302542036|ref|ZP_07294378.1| RNA polymerase sigma (70) factor RpoD [Streptomyces hygroscopicus
ATCC 53653]
gi|302459654|gb|EFL22747.1| RNA polymerase sigma (70) factor RpoD [Streptomyces himastatinicus
ATCC 53653]
Length = 502
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 206 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 253
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 254 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 312
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 313 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 372
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 373 LAKELDMTPEKV 384
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 3/194 (1%)
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
+T E + L+++I+ L++D + L RLG E +AA + L + A
Sbjct: 47 VTPEEEIHLARRIQAKLAIDGAREELAMRLGRPSPEEDVAAFMGRDPKALIEATRQGLWA 106
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
+ KL+ +N+RLV+SIA++Y DL+Q G IGL+R EKFD KG++ STY WWI
Sbjct: 107 QRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGNIGLMRATEKFDPEKGYRFSTYATWWI 166
Query: 326 RQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE--EKGVTPSVDRIAEYLNMSQKKV 383
RQ ++RA+ +RT+RLP H+ E++ +R ++R+ E G PS D +A L + KK+
Sbjct: 167 RQSITRAIANQARTIRLPIHMVEKVRKVRR-EMRMATLELGRRPSEDELASRLAIKVKKL 225
Query: 384 RNATEAIGKVFSLD 397
R E + SLD
Sbjct: 226 RTIQEVSRQPVSLD 239
>gi|406980501|gb|EKE02092.1| RNA polymerase sigma factor [uncultured bacterium]
Length = 348
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
CS+A+EKLV +N+RLV+SIA++Y G DL+Q G +GL+R EKFD +KG+K STY
Sbjct: 101 CSIAKEKLVNANLRLVVSIAKKYIGRGLSFLDLIQEGNMGLMRAAEKFDYAKGYKFSTYA 160
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQ 380
WWI+Q ++R + + SRT+RLP H+ E +G I+ A L E P+ + IAE L++
Sbjct: 161 TWWIQQAITRGIADKSRTIRLPVHMIETIGRIKKATRDLTNELNRKPTKEEIAERLDIPL 220
Query: 381 KKVRNATEAIGKVFSLD 397
K+R ++ SL+
Sbjct: 221 SKLRAVIKSAQATISLE 237
>gi|383938188|ref|ZP_09991406.1| RNA polymerase sigma factor RpoD [Streptococcus pseudopneumoniae
SK674]
gi|418969299|ref|ZP_13520430.1| RNA polymerase sigma factor RpoD [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383352240|gb|EID29963.1| RNA polymerase sigma factor RpoD [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383714906|gb|EID70894.1| RNA polymerase sigma factor RpoD [Streptococcus pseudopneumoniae
SK674]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|357639778|ref|ZP_09137651.1| RNA polymerase sigma factor RpoD [Streptococcus urinalis 2285-97]
gi|418416736|ref|ZP_12989935.1| RNA polymerase sigma factor rpoD [Streptococcus urinalis
FB127-CNA-2]
gi|357588232|gb|EHJ57640.1| RNA polymerase sigma factor RpoD [Streptococcus urinalis 2285-97]
gi|410874554|gb|EKS22485.1| RNA polymerase sigma factor rpoD [Streptococcus urinalis
FB127-CNA-2]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Query: 254 ELQSILMECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL + E L A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD S
Sbjct: 119 ELAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYS 178
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQ 238
Query: 372 IAEYLNMSQKKVR 384
IAE ++M+ KVR
Sbjct: 239 IAERMDMTPDKVR 251
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 228 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 278
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 279 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 338
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 339 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 396
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 397 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 427
>gi|15900942|ref|NP_345546.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae TIGR4]
gi|15903023|ref|NP_358573.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae R6]
gi|111657922|ref|ZP_01408632.1| hypothetical protein SpneT_02000898 [Streptococcus pneumoniae
TIGR4]
gi|116516638|ref|YP_816435.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae D39]
gi|148985044|ref|ZP_01818287.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP3-BS71]
gi|148989116|ref|ZP_01820506.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP6-BS73]
gi|148994179|ref|ZP_01823494.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SP9-BS68]
gi|148998339|ref|ZP_01825781.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP11-BS70]
gi|149003984|ref|ZP_01828792.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP14-BS69]
gi|149006254|ref|ZP_01829966.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SP18-BS74]
gi|149013172|ref|ZP_01833989.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP19-BS75]
gi|149019675|ref|ZP_01834994.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP23-BS72]
gi|168483147|ref|ZP_02708099.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC1873-00]
gi|168487460|ref|ZP_02711968.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC1087-00]
gi|168488915|ref|ZP_02713114.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae SP195]
gi|168494506|ref|ZP_02718649.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC3059-06]
gi|168576202|ref|ZP_02722096.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae MLV-016]
gi|169833634|ref|YP_001694498.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
Hungary19A-6]
gi|182684177|ref|YP_001835924.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae CGSP14]
gi|221231817|ref|YP_002510969.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae ATCC
700669]
gi|225854569|ref|YP_002736081.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae JJA]
gi|225856717|ref|YP_002738228.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae P1031]
gi|225858886|ref|YP_002740396.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae 70585]
gi|225861039|ref|YP_002742548.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650028|ref|ZP_04524280.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae CCRI
1974]
gi|237821736|ref|ZP_04597581.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae CCRI
1974M2]
gi|298230104|ref|ZP_06963785.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255542|ref|ZP_06979128.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502915|ref|YP_003724855.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
pneumoniae TCH8431/19A]
gi|303256088|ref|ZP_07342108.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae BS455]
gi|303260611|ref|ZP_07346576.1| RNA polymerase sigma factor [Streptococcus pneumoniae SP-BS293]
gi|303263023|ref|ZP_07348956.1| RNA polymerase sigma factor [Streptococcus pneumoniae SP14-BS292]
gi|303264870|ref|ZP_07350786.1| RNA polymerase sigma factor [Streptococcus pneumoniae BS397]
gi|303266910|ref|ZP_07352787.1| RNA polymerase sigma factor [Streptococcus pneumoniae BS457]
gi|303269116|ref|ZP_07354896.1| RNA polymerase sigma factor [Streptococcus pneumoniae BS458]
gi|307067745|ref|YP_003876711.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Streptococcus pneumoniae AP200]
gi|307127396|ref|YP_003879427.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae 670-6B]
gi|387626407|ref|YP_006062582.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae INV104]
gi|387757457|ref|YP_006064436.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae OXC141]
gi|387759446|ref|YP_006066424.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae INV200]
gi|387788245|ref|YP_006253313.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae ST556]
gi|405761187|ref|YP_006701783.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPNA45]
gi|410476522|ref|YP_006743281.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
pneumoniae gamPNI0373]
gi|415698415|ref|ZP_11457188.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 459-5]
gi|415749469|ref|ZP_11477413.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae SV35]
gi|415752154|ref|ZP_11479265.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae SV36]
gi|417312664|ref|ZP_12099376.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA04375]
gi|417676832|ref|ZP_12326242.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17545]
gi|417679052|ref|ZP_12328449.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17570]
gi|417686552|ref|ZP_12335829.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41301]
gi|417693993|ref|ZP_12343181.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47901]
gi|417696280|ref|ZP_12345459.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47368]
gi|417698503|ref|ZP_12347675.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41317]
gi|418073861|ref|ZP_12711118.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11184]
gi|418076231|ref|ZP_12713470.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47502]
gi|418078565|ref|ZP_12715788.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 4027-06]
gi|418080533|ref|ZP_12717745.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 6735-05]
gi|418082994|ref|ZP_12720195.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44288]
gi|418085136|ref|ZP_12722320.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47281]
gi|418086798|ref|ZP_12723968.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47033]
gi|418089468|ref|ZP_12726625.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43265]
gi|418091579|ref|ZP_12728722.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44452]
gi|418093916|ref|ZP_12731045.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49138]
gi|418096178|ref|ZP_12733293.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16531]
gi|418098442|ref|ZP_12735541.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 6901-05]
gi|418100897|ref|ZP_12737982.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 7286-06]
gi|418102820|ref|ZP_12739894.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP070]
gi|418105149|ref|ZP_12742207.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44500]
gi|418107497|ref|ZP_12744535.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41410]
gi|418110059|ref|ZP_12747083.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49447]
gi|418112423|ref|ZP_12749425.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41538]
gi|418114571|ref|ZP_12751560.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 5787-06]
gi|418116808|ref|ZP_12753779.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 6963-05]
gi|418119610|ref|ZP_12756562.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA18523]
gi|418121135|ref|ZP_12758081.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44194]
gi|418123345|ref|ZP_12760279.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44378]
gi|418125724|ref|ZP_12762633.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44511]
gi|418127932|ref|ZP_12764828.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP170]
gi|418130238|ref|ZP_12767122.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA07643]
gi|418132899|ref|ZP_12769772.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11304]
gi|418135135|ref|ZP_12771992.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11426]
gi|418137110|ref|ZP_12773952.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11663]
gi|418139606|ref|ZP_12776432.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13338]
gi|418141674|ref|ZP_12778487.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13455]
gi|418143915|ref|ZP_12780715.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13494]
gi|418146293|ref|ZP_12783075.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13637]
gi|418148497|ref|ZP_12785262.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13856]
gi|418150541|ref|ZP_12787291.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA14798]
gi|418152825|ref|ZP_12789565.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16121]
gi|418155080|ref|ZP_12791811.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16242]
gi|418157427|ref|ZP_12794143.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16833]
gi|418159728|ref|ZP_12796427.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17227]
gi|418162133|ref|ZP_12798819.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17328]
gi|418164345|ref|ZP_12801017.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17371]
gi|418166723|ref|ZP_12803379.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17971]
gi|418169698|ref|ZP_12806339.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19077]
gi|418171278|ref|ZP_12807904.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19451]
gi|418173449|ref|ZP_12810063.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41277]
gi|418175895|ref|ZP_12812491.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41437]
gi|418178111|ref|ZP_12814695.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41565]
gi|418180479|ref|ZP_12817049.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41688]
gi|418182716|ref|ZP_12819277.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43380]
gi|418184876|ref|ZP_12821423.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47283]
gi|418187083|ref|ZP_12823611.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47360]
gi|418189320|ref|ZP_12825835.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47373]
gi|418191641|ref|ZP_12828145.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47388]
gi|418193707|ref|ZP_12830199.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47439]
gi|418195310|ref|ZP_12831790.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47688]
gi|418197895|ref|ZP_12834357.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47778]
gi|418200092|ref|ZP_12836537.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47976]
gi|418202337|ref|ZP_12838767.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA52306]
gi|418214275|ref|ZP_12841010.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA54644]
gi|418216524|ref|ZP_12843248.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218828|ref|ZP_12845495.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP127]
gi|418221142|ref|ZP_12847796.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47751]
gi|418223147|ref|ZP_12849788.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 5185-06]
gi|418225482|ref|ZP_12852111.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP112]
gi|418227672|ref|ZP_12854290.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 3063-00]
gi|418229820|ref|ZP_12856425.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP01]
gi|418232142|ref|ZP_12858729.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA07228]
gi|418234291|ref|ZP_12860870.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA08780]
gi|418238650|ref|ZP_12865205.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422883|ref|ZP_13963098.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43264]
gi|419425094|ref|ZP_13965292.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 7533-05]
gi|419427045|ref|ZP_13967228.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 5652-06]
gi|419429224|ref|ZP_13969391.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11856]
gi|419431441|ref|ZP_13971584.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP05]
gi|419434196|ref|ZP_13974313.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA40183]
gi|419435936|ref|ZP_13976028.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 8190-05]
gi|419438169|ref|ZP_13978239.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13499]
gi|419440358|ref|ZP_13980407.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA40410]
gi|419442644|ref|ZP_13982672.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13224]
gi|419444717|ref|ZP_13984732.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19923]
gi|419446857|ref|ZP_13986862.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 7879-04]
gi|419448706|ref|ZP_13988703.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 4075-00]
gi|419451407|ref|ZP_13991393.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP02]
gi|419453382|ref|ZP_13993355.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP03]
gi|419455468|ref|ZP_13995428.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP04]
gi|419457469|ref|ZP_13997414.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA02254]
gi|419459920|ref|ZP_13999852.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA02270]
gi|419462238|ref|ZP_14002148.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA02714]
gi|419464494|ref|ZP_14004387.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA04175]
gi|419466497|ref|ZP_14006380.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA05248]
gi|419468937|ref|ZP_14008808.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA06083]
gi|419471022|ref|ZP_14010881.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA07914]
gi|419473139|ref|ZP_14012990.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13430]
gi|419475467|ref|ZP_14015307.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA14688]
gi|419477736|ref|ZP_14017561.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA18068]
gi|419479915|ref|ZP_14019722.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19101]
gi|419482089|ref|ZP_14021882.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA40563]
gi|419484042|ref|ZP_14023818.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43257]
gi|419486622|ref|ZP_14026387.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44128]
gi|419488832|ref|ZP_14028582.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44386]
gi|419490982|ref|ZP_14030722.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47179]
gi|419493277|ref|ZP_14033003.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47210]
gi|419495396|ref|ZP_14035114.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47461]
gi|419497256|ref|ZP_14036966.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47522]
gi|419499610|ref|ZP_14039307.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47597]
gi|419501821|ref|ZP_14041506.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47628]
gi|419503880|ref|ZP_14043549.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47760]
gi|419506010|ref|ZP_14045671.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49194]
gi|419508165|ref|ZP_14047818.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49542]
gi|419510671|ref|ZP_14050314.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP141]
gi|419512449|ref|ZP_14052083.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA05578]
gi|419514807|ref|ZP_14054432.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae
England14-9]
gi|419516719|ref|ZP_14056337.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA02506]
gi|419518861|ref|ZP_14058468.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA08825]
gi|419520980|ref|ZP_14060576.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA05245]
gi|419525823|ref|ZP_14065386.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA14373]
gi|419528485|ref|ZP_14068027.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA17719]
gi|419530319|ref|ZP_14069848.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA40028]
gi|419532309|ref|ZP_14071825.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA47794]
gi|419534554|ref|ZP_14074056.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA17457]
gi|421206519|ref|ZP_15663579.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2090008]
gi|421208893|ref|ZP_15665914.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070005]
gi|421211172|ref|ZP_15668155.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070035]
gi|421213142|ref|ZP_15670102.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070108]
gi|421215276|ref|ZP_15672203.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070109]
gi|421217638|ref|ZP_15674538.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070335]
gi|421220241|ref|ZP_15677090.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070425]
gi|421223416|ref|ZP_15680193.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070531]
gi|421224940|ref|ZP_15681683.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070768]
gi|421227248|ref|ZP_15683955.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2072047]
gi|421229709|ref|ZP_15686380.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2061376]
gi|421236202|ref|ZP_15692801.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2071004]
gi|421238721|ref|ZP_15695288.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2071247]
gi|421240626|ref|ZP_15697172.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2080913]
gi|421243016|ref|ZP_15699536.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2081074]
gi|421244887|ref|ZP_15701388.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2081685]
gi|421247336|ref|ZP_15703822.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2082170]
gi|421266100|ref|ZP_15716983.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR27]
gi|421268385|ref|ZP_15719255.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR95]
gi|421270434|ref|ZP_15721290.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR48]
gi|421273254|ref|ZP_15724094.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR55]
gi|421275835|ref|ZP_15726662.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA52612]
gi|421278869|ref|ZP_15729677.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA17301]
gi|421281055|ref|ZP_15731853.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA04672]
gi|421283245|ref|ZP_15734032.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA04216]
gi|421285498|ref|ZP_15736275.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA60190]
gi|421288189|ref|ZP_15738952.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA58771]
gi|421289683|ref|ZP_15740434.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA54354]
gi|421291934|ref|ZP_15742672.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA56348]
gi|421294270|ref|ZP_15744993.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA56113]
gi|421295769|ref|ZP_15746481.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA58581]
gi|421298517|ref|ZP_15749205.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA60080]
gi|421300958|ref|ZP_15751628.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA19998]
gi|421303271|ref|ZP_15753935.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA17484]
gi|421305001|ref|ZP_15755657.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA62331]
gi|421307337|ref|ZP_15757981.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA60132]
gi|421309510|ref|ZP_15760137.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA62681]
gi|421311869|ref|ZP_15762474.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA58981]
gi|421314242|ref|ZP_15764832.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA47562]
gi|444383022|ref|ZP_21181218.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PCS8106]
gi|444384875|ref|ZP_21182966.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PCS8203]
gi|444388512|ref|ZP_21186494.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
PCS125219]
gi|444389794|ref|ZP_21187709.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
PCS70012]
gi|444391855|ref|ZP_21189649.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
PCS81218]
gi|444395512|ref|ZP_21193056.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0002]
gi|444397536|ref|ZP_21195019.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0006]
gi|444399356|ref|ZP_21196822.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0007]
gi|444403057|ref|ZP_21200177.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0008]
gi|444404639|ref|ZP_21201587.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0009]
gi|444408751|ref|ZP_21205384.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0010]
gi|444410877|ref|ZP_21207387.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0076]
gi|444414462|ref|ZP_21210727.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0199]
gi|444417379|ref|ZP_21213424.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0360]
gi|444419718|ref|ZP_21215560.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0427]
gi|444422542|ref|ZP_21218194.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0446]
gi|61234224|sp|P0A4I9.1|RPOD_STRPN RecName: Full=RNA polymerase sigma factor RpoD
gi|61234230|sp|P0A4J0.1|RPOD_STRR6 RecName: Full=RNA polymerase sigma factor RpoD
gi|2108331|emb|CAA72252.1| rpoD [Streptococcus pneumoniae]
gi|14972548|gb|AAK75186.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae TIGR4]
gi|15458593|gb|AAK99783.1| RNA polymerase sigmA FACTOR 70 [Streptococcus pneumoniae R6]
gi|116077214|gb|ABJ54934.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae D39]
gi|147755736|gb|EDK62781.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP11-BS70]
gi|147758043|gb|EDK65049.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP14-BS69]
gi|147762031|gb|EDK68993.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SP18-BS74]
gi|147763023|gb|EDK69967.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP19-BS75]
gi|147922742|gb|EDK73859.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP3-BS71]
gi|147925339|gb|EDK76417.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP6-BS73]
gi|147927422|gb|EDK78452.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SP9-BS68]
gi|147931050|gb|EDK82030.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae SP23-BS72]
gi|168996136|gb|ACA36748.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae Hungary19A-6]
gi|172043392|gb|EDT51438.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC1873-00]
gi|182629511|gb|ACB90459.1| RNA polymerase sigma factor [Streptococcus pneumoniae CGSP14]
gi|183569691|gb|EDT90219.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC1087-00]
gi|183572434|gb|EDT92962.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae SP195]
gi|183575600|gb|EDT96128.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC3059-06]
gi|183577989|gb|EDT98517.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae MLV-016]
gi|220674277|emb|CAR68818.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae ATCC
700669]
gi|225720127|gb|ACO15981.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae 70585]
gi|225722225|gb|ACO18078.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae JJA]
gi|225725305|gb|ACO21157.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae P1031]
gi|225728137|gb|ACO23988.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238510|gb|ADI69641.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
pneumoniae TCH8431/19A]
gi|301794192|emb|CBW36610.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae INV104]
gi|301800046|emb|CBW32640.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae OXC141]
gi|301802035|emb|CBW34765.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae INV200]
gi|302596935|gb|EFL64061.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae BS455]
gi|302635850|gb|EFL66352.1| RNA polymerase sigma factor [Streptococcus pneumoniae SP14-BS292]
gi|302638261|gb|EFL68731.1| RNA polymerase sigma factor [Streptococcus pneumoniae SP-BS293]
gi|302641365|gb|EFL71732.1| RNA polymerase sigma factor [Streptococcus pneumoniae BS458]
gi|302643543|gb|EFL73813.1| RNA polymerase sigma factor [Streptococcus pneumoniae BS457]
gi|302645558|gb|EFL75789.1| RNA polymerase sigma factor [Streptococcus pneumoniae BS397]
gi|306409282|gb|ADM84709.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Streptococcus pneumoniae AP200]
gi|306484458|gb|ADM91327.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae 670-6B]
gi|327389372|gb|EGE87717.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA04375]
gi|332073431|gb|EGI83910.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17570]
gi|332075028|gb|EGI85499.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17545]
gi|332075404|gb|EGI85873.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41301]
gi|332200548|gb|EGJ14620.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41317]
gi|332201555|gb|EGJ15625.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47368]
gi|332202930|gb|EGJ16998.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47901]
gi|353747756|gb|EHD28412.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 4027-06]
gi|353750020|gb|EHD30663.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47502]
gi|353750270|gb|EHD30911.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11184]
gi|353753073|gb|EHD33697.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 6735-05]
gi|353756907|gb|EHD37506.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44288]
gi|353758831|gb|EHD39419.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47281]
gi|353759059|gb|EHD39645.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47033]
gi|353762154|gb|EHD42717.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43265]
gi|353765257|gb|EHD45804.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44452]
gi|353765792|gb|EHD46334.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49138]
gi|353769802|gb|EHD50318.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 6901-05]
gi|353771165|gb|EHD51676.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16531]
gi|353771576|gb|EHD52084.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 7286-06]
gi|353775453|gb|EHD55933.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP070]
gi|353777214|gb|EHD57687.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44500]
gi|353779680|gb|EHD60144.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41410]
gi|353782684|gb|EHD63115.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49447]
gi|353784289|gb|EHD64710.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41538]
gi|353786931|gb|EHD67341.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 5787-06]
gi|353789637|gb|EHD70030.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA18523]
gi|353789785|gb|EHD70177.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 6963-05]
gi|353793962|gb|EHD74321.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44194]
gi|353797197|gb|EHD77533.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44511]
gi|353797432|gb|EHD77767.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44378]
gi|353800393|gb|EHD80707.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP170]
gi|353803530|gb|EHD83822.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA07643]
gi|353805925|gb|EHD86199.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13455]
gi|353806855|gb|EHD87128.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11304]
gi|353809656|gb|EHD89916.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13494]
gi|353813172|gb|EHD93405.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13856]
gi|353815089|gb|EHD95311.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13637]
gi|353815673|gb|EHD95888.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA14798]
gi|353819470|gb|EHD99668.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16121]
gi|353821461|gb|EHE01637.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17227]
gi|353823372|gb|EHE03547.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16242]
gi|353823875|gb|EHE04049.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA16833]
gi|353828176|gb|EHE08319.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17328]
gi|353830319|gb|EHE10449.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17971]
gi|353831622|gb|EHE11747.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA17371]
gi|353833677|gb|EHE13785.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19077]
gi|353836010|gb|EHE16099.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19451]
gi|353840148|gb|EHE20222.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41277]
gi|353842001|gb|EHE22051.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41437]
gi|353844885|gb|EHE24928.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41565]
gi|353845181|gb|EHE25223.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA41688]
gi|353850953|gb|EHE30957.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43380]
gi|353851412|gb|EHE31408.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47283]
gi|353852313|gb|EHE32302.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47360]
gi|353856462|gb|EHE36431.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47373]
gi|353857542|gb|EHE37505.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47388]
gi|353859687|gb|EHE39637.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47439]
gi|353861837|gb|EHE41770.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47688]
gi|353863635|gb|EHE43557.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47778]
gi|353865139|gb|EHE45048.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47976]
gi|353868140|gb|EHE48030.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA52306]
gi|353871558|gb|EHE51429.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA54644]
gi|353873575|gb|EHE53436.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875483|gb|EHE55335.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP127]
gi|353876065|gb|EHE55915.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47751]
gi|353879273|gb|EHE59099.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 5185-06]
gi|353881900|gb|EHE61712.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 3063-00]
gi|353882790|gb|EHE62601.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP112]
gi|353886869|gb|EHE66649.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA07228]
gi|353888536|gb|EHE68310.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA08780]
gi|353888718|gb|EHE68491.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP01]
gi|353894400|gb|EHE74142.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353901737|gb|EHE77269.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11663]
gi|353902372|gb|EHE77902.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11426]
gi|353905079|gb|EHE80518.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13338]
gi|379137987|gb|AFC94778.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae ST556]
gi|379532467|gb|EHY97696.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA02254]
gi|379532498|gb|EHY97726.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA02270]
gi|379533084|gb|EHY98307.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA02714]
gi|379538174|gb|EHZ03355.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13499]
gi|379539713|gb|EHZ04892.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA04175]
gi|379539994|gb|EHZ05171.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA05245]
gi|379544620|gb|EHZ09764.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA05248]
gi|379545738|gb|EHZ10877.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA07914]
gi|379547040|gb|EHZ12178.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA06083]
gi|379551172|gb|EHZ16267.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA11856]
gi|379551945|gb|EHZ17036.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13224]
gi|379552646|gb|EHZ17735.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA13430]
gi|379558516|gb|EHZ23550.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA14373]
gi|379561012|gb|EHZ26033.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA14688]
gi|379564508|gb|EHZ29504.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA17719]
gi|379565077|gb|EHZ30071.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA17457]
gi|379567118|gb|EHZ32105.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA18068]
gi|379571081|gb|EHZ36040.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19101]
gi|379572410|gb|EHZ37367.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA19923]
gi|379573838|gb|EHZ38785.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA40028]
gi|379575580|gb|EHZ40510.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA40183]
gi|379579499|gb|EHZ44405.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA40410]
gi|379580963|gb|EHZ45852.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA40563]
gi|379583553|gb|EHZ48430.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43257]
gi|379587255|gb|EHZ52104.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44128]
gi|379587409|gb|EHZ52257.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA43264]
gi|379587725|gb|EHZ52572.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA44386]
gi|379593452|gb|EHZ58264.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47210]
gi|379594561|gb|EHZ59371.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47179]
gi|379595478|gb|EHZ60286.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47461]
gi|379601056|gb|EHZ65833.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47628]
gi|379601249|gb|EHZ66025.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47522]
gi|379601380|gb|EHZ66155.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47597]
gi|379606093|gb|EHZ70842.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA47794]
gi|379606557|gb|EHZ71304.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA47760]
gi|379607924|gb|EHZ72670.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49194]
gi|379611883|gb|EHZ76605.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA49542]
gi|379614397|gb|EHZ79107.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 7879-04]
gi|379615778|gb|EHZ80483.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 8190-05]
gi|379618498|gb|EHZ83173.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 5652-06]
gi|379619981|gb|EHZ84647.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 7533-05]
gi|379623112|gb|EHZ87746.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP02]
gi|379623764|gb|EHZ88397.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 4075-00]
gi|379627091|gb|EHZ91707.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP03]
gi|379629925|gb|EHZ94519.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP04]
gi|379630533|gb|EHZ95118.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae EU-NP05]
gi|379632724|gb|EHZ97296.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae NP141]
gi|379635356|gb|EHZ99914.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae
England14-9]
gi|379636919|gb|EIA01477.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA05578]
gi|379640722|gb|EIA05261.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA02506]
gi|379641840|gb|EIA06375.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA08825]
gi|381309850|gb|EIC50683.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae SV36]
gi|381317067|gb|EIC57803.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 459-5]
gi|381317763|gb|EIC58488.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae SV35]
gi|395573130|gb|EJG33721.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070035]
gi|395575231|gb|EJG35801.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070005]
gi|395576158|gb|EJG36716.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2090008]
gi|395580292|gb|EJG40778.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070108]
gi|395580763|gb|EJG41237.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070109]
gi|395584072|gb|EJG44484.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070335]
gi|395585875|gb|EJG46253.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070531]
gi|395588245|gb|EJG48578.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070425]
gi|395590418|gb|EJG50725.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2070768]
gi|395595745|gb|EJG55972.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2072047]
gi|395596117|gb|EJG56340.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2061376]
gi|395601984|gb|EJG62129.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2071247]
gi|395603169|gb|EJG63309.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2071004]
gi|395608417|gb|EJG68511.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2080913]
gi|395609209|gb|EJG69298.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2081074]
gi|395609387|gb|EJG69474.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2081685]
gi|395614157|gb|EJG74178.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2082170]
gi|395868229|gb|EJG79347.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR48]
gi|395868836|gb|EJG79953.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR27]
gi|395869880|gb|EJG80994.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR95]
gi|395872255|gb|EJG83354.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae GA52612]
gi|395873685|gb|EJG84775.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPAR55]
gi|395880302|gb|EJG91355.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA17301]
gi|395881208|gb|EJG92257.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA04216]
gi|395882216|gb|EJG93263.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA04672]
gi|395886752|gb|EJG97768.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA58771]
gi|395887477|gb|EJG98492.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA60190]
gi|395888924|gb|EJG99934.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA54354]
gi|395894151|gb|EJH05132.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA56348]
gi|395894560|gb|EJH05540.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA56113]
gi|395896982|gb|EJH07946.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA58581]
gi|395898518|gb|EJH09462.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA19998]
gi|395901893|gb|EJH12829.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA17484]
gi|395902473|gb|EJH13406.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA60080]
gi|395905663|gb|EJH16568.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA62331]
gi|395907944|gb|EJH18829.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA60132]
gi|395910931|gb|EJH21800.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA62681]
gi|395911258|gb|EJH22126.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA58981]
gi|395914742|gb|EJH25586.1| RNA polymerase sigma factor [Streptococcus pneumoniae GA47562]
gi|404278076|emb|CCM08653.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae SPNA45]
gi|406369467|gb|AFS43157.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
pneumoniae gamPNI0373]
gi|429316082|emb|CCP35741.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SPN034156]
gi|429319426|emb|CCP32694.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SPN034183]
gi|429321242|emb|CCP34668.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SPN994039]
gi|429323062|emb|CCP30709.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
SPN994038]
gi|444249185|gb|ELU55679.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
PCS125219]
gi|444250715|gb|ELU57192.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PCS8106]
gi|444251635|gb|ELU58104.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PCS8203]
gi|444256257|gb|ELU62595.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
PCS70012]
gi|444258155|gb|ELU64485.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0002]
gi|444260193|gb|ELU66501.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0006]
gi|444264512|gb|ELU70582.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae
PCS81218]
gi|444265317|gb|ELU71333.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0008]
gi|444268789|gb|ELU74619.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0007]
gi|444269578|gb|ELU75385.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0010]
gi|444276345|gb|ELU81909.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0076]
gi|444276449|gb|ELU82006.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0009]
gi|444281921|gb|ELU87212.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0199]
gi|444284030|gb|ELU89198.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0360]
gi|444286256|gb|ELU91249.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0427]
gi|444288132|gb|ELU93033.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae PNI0446]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|419523750|ref|ZP_14063327.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA13723]
gi|421234075|ref|ZP_15690696.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2061617]
gi|421249381|ref|ZP_15705841.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2082239]
gi|379556925|gb|EHZ21973.1| RNA polymerase sigma factor RpoD [Streptococcus pneumoniae GA13723]
gi|395601831|gb|EJG61977.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2061617]
gi|395614002|gb|EJG74024.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2082239]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|417848248|ref|ZP_12494197.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK1073]
gi|419765984|ref|ZP_14292204.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK579]
gi|339454995|gb|EGP67608.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK1073]
gi|383354536|gb|EID32096.1| RNA polymerase sigma factor RpoD [Streptococcus mitis SK579]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|306833811|ref|ZP_07466936.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus bovis
ATCC 700338]
gi|336064578|ref|YP_004559437.1| RNA polymerase primary sigma factor [Streptococcus pasteurianus
ATCC 43144]
gi|304424005|gb|EFM27146.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus bovis
ATCC 700338]
gi|334282778|dbj|BAK30351.1| RNA polymerase primary sigma factor [Streptococcus pasteurianus
ATCC 43144]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 111/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E V L+ ++ + ++ + +L+E L PS + A ++ ++
Sbjct: 65 AFFKEMSRYPLLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQK 124
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+ + L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 125 QFEHRLHRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 184
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K P+ +
Sbjct: 185 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKEL 244
Query: 373 AEYLNMS 379
A+ L +S
Sbjct: 245 ADELEVS 251
>gi|288905580|ref|YP_003430802.1| RNA polymerase major sigma factor [Streptococcus gallolyticus
UCN34]
gi|306831670|ref|ZP_07464827.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978609|ref|YP_004288325.1| RNA polymerase sigma factor rpoD [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386338028|ref|YP_006034197.1| RNA polymerase primary sigma factor [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|288732306|emb|CBI13876.1| RNA polymerase major sigma factor [Streptococcus gallolyticus
UCN34]
gi|304426095|gb|EFM29210.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178537|emb|CBZ48581.1| RNA polymerase sigma factor rpoD [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334280664|dbj|BAK28238.1| RNA polymerase primary sigma factor [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|269125851|ref|YP_003299221.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermomonospora
curvata DSM 43183]
gi|268310809|gb|ACY97183.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermomonospora
curvata DSM 43183]
Length = 559
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 114/192 (59%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ + ++L E +
Sbjct: 262 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAEERLATMGDQLSEE------------DK 309
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 310 ADLEWIAEDGRRAKAHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 369
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 370 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 429
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 430 LAKELDMTPEKV 441
>gi|253702377|ref|YP_003023566.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter sp. M21]
gi|251777227|gb|ACT19808.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M21]
Length = 584
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 9/157 (5%)
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
LA+ +LV +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 344 AKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYA 403
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 380
WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E G PS + IAE + +
Sbjct: 404 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMALPL 463
Query: 381 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KVR KV + +E SL GE H G
Sbjct: 464 DKVR-------KVLKIAKEPI-SLETPIGEEEDSHLG 492
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|322391830|ref|ZP_08065295.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
peroris ATCC 700780]
gi|321145310|gb|EFX40706.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
peroris ATCC 700780]
Length = 381
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 143 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 202
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 262
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 263 R-------EILKIAQEPV-SLETPIGEEDDSHLG 288
>gi|291436829|ref|ZP_06576219.1| RNA polymerase sigma factor RpoD [Streptomyces ghanaensis ATCC
14672]
gi|291339724|gb|EFE66680.1| RNA polymerase sigma factor RpoD [Streptomyces ghanaensis ATCC
14672]
Length = 509
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 213 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 260
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 261 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 319
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 320 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 379
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 380 LAKELDMTPEKV 391
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ER P+ +
Sbjct: 186 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLPAAQ-------- 237
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 238 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 296
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 297 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 354
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 355 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 385
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|33866043|ref|NP_897602.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639018|emb|CAE08024.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 308
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ +++ +N+RLV+++A+RY G D+ DL+Q G +GL R +EK+D ++G + STY YWW
Sbjct: 66 AKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYWW 125
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQG++RAL SRT+R+P +++E+L +R AK RL ++ G+TP+ +++A+++ + +V
Sbjct: 126 IRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARLMQRNGLTPTAEQLADFMEIPIAEV 185
Query: 384 RN 385
+
Sbjct: 186 ED 187
>gi|168491966|ref|ZP_02716109.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC0288-04]
gi|421231839|ref|ZP_15688483.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2080076]
gi|183573791|gb|EDT94319.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Streptococcus pneumoniae CDC0288-04]
gi|395595868|gb|EJG56094.1| RNA polymerase sigma factor rpoD [Streptococcus pneumoniae 2080076]
Length = 369
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|365867904|ref|ZP_09407470.1| RNA polymerase sigma factor [Streptomyces sp. W007]
gi|364002693|gb|EHM23867.1| RNA polymerase sigma factor [Streptomyces sp. W007]
Length = 497
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 201 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 248
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 249 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 307
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 308 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 367
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 368 LAKELDMTPEKV 379
>gi|307703796|ref|ZP_07640737.1| RNA polymerase sigma factor RpoD [Streptococcus oralis ATCC 35037]
gi|417939941|ref|ZP_12583229.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK313]
gi|307622631|gb|EFO01627.1| RNA polymerase sigma factor RpoD [Streptococcus oralis ATCC 35037]
gi|343388822|gb|EGV01407.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK313]
Length = 318
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 80 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 139
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 140 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 199
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 200 R-------EILKIAQEPV-SLETPIGEEDDSHLG 225
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+K STY WW
Sbjct: 164 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 223
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+ + IA + M+ +K+
Sbjct: 224 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKL 283
Query: 384 R 384
R
Sbjct: 284 R 284
>gi|308177806|ref|YP_003917212.1| RNA polymerase sigma factor RpoD [Arthrobacter arilaitensis Re117]
gi|307745269|emb|CBT76241.1| RNA polymerase sigma factor RpoD [Arthrobacter arilaitensis Re117]
Length = 403
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 119/192 (61%), Gaps = 13/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+ +I+ GL D +L++ G SM+Q R+ R
Sbjct: 106 VKDYLKQIGKVALLNAEQEVDLALRIEAGLFATD---KLEKDDG---SMDQ-----RL-R 153
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + I+ + +A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 154 WDYEQIIHDGKIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 213
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 214 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 273
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 274 LAKELDMTPEKV 285
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E + L+ ++ + + + +L E L P+ Q A ++ S+
Sbjct: 66 AFFKEMSRYPLLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQR 125
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+ ++ L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 126 QFENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 185
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K P+ +
Sbjct: 186 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKEL 245
Query: 373 AEYLNMS 379
A+ L M+
Sbjct: 246 AQELEMT 252
>gi|320531403|ref|ZP_08032370.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 171
str. F0337]
gi|320136375|gb|EFW28356.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 171
str. F0337]
Length = 537
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 120/209 (57%), Gaps = 13/209 (6%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL + V L+K+I+ GL + H+L K
Sbjct: 223 GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAE-HRLAEK--- 278
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
L A LR EL + + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 279 -----GNDLPAKLR---RELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 330
Query: 296 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIR 354
Q G +GL+R +EKFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R
Sbjct: 331 QEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLAR 390
Query: 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+ L++ G P+ + +A L+M+ +KV
Sbjct: 391 VQRQMLQDLGREPTPEELAVELDMTPEKV 419
>gi|345002500|ref|YP_004805354.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344318126|gb|AEN12814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 515
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 325
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 326 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 385
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 386 LAKELDMTPEKV 397
>gi|171779914|ref|ZP_02920818.1| hypothetical protein STRINF_01701 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281262|gb|EDT46697.1| RNA polymerase sigma factor RpoD [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 369
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 111/202 (54%), Gaps = 29/202 (14%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L K+RL + +L
Sbjct: 27 YLNGIGRTALLTAADEVELAKRIEAGLYAK-HLLETKKRLSA------------AKKRDL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 74 AIIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 133
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNH--------------LHERLGLIRNAKLRLE 361
K STY WWIRQ ++R + + SRT+RLP H LH++LG +
Sbjct: 134 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELAN 193
Query: 362 EKGVTPSVDRIAEYLNMSQKKV 383
E G+ V++IA+ L+ S+ V
Sbjct: 194 ESGI--PVEKIADLLDHSRDPV 213
>gi|386382689|ref|ZP_10068283.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385669860|gb|EIF93009.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 516
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 220 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 267
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 268 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 326
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 327 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 386
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 387 LAKELDMTPEKV 398
>gi|335029861|ref|ZP_08523363.1| RNA polymerase sigma factor RpoD [Streptococcus infantis SK1076]
gi|417936201|ref|ZP_12579518.1| RNA polymerase sigma factor RpoD [Streptococcus infantis X]
gi|417937775|ref|ZP_12581075.1| RNA polymerase sigma factor RpoD [Streptococcus infantis SK970]
gi|421277260|ref|ZP_15728080.1| RNA polymerase sigma factor [Streptococcus mitis SPAR10]
gi|334268003|gb|EGL86453.1| RNA polymerase sigma factor RpoD [Streptococcus infantis SK1076]
gi|343392039|gb|EGV04612.1| RNA polymerase sigma factor RpoD [Streptococcus infantis SK970]
gi|343403110|gb|EGV15615.1| RNA polymerase sigma factor RpoD [Streptococcus infantis X]
gi|395876541|gb|EJG87617.1| RNA polymerase sigma factor [Streptococcus mitis SPAR10]
Length = 369
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 RNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
R ++ + +E SL GE H G
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLG 276
>gi|1582791|prf||2119302A sigma factor
Length = 445
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 149 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 196
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 197 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 255
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 256 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 315
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 316 LAKELDMTPEKV 327
>gi|341615468|ref|ZP_08702337.1| RNA polymerase sigma factor RpoD [Citromicrobium sp. JLT1363]
Length = 668
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 115/193 (59%), Gaps = 18/193 (9%)
Query: 233 ERLGCEPSMEQLAASLRISRPELQSIL-------MECSLAREKLVMSNVRLVMSIAQRYD 285
ER+ E S +A+ ++ PE + I+ E +A++++V +N+RLV+SIA++Y
Sbjct: 393 ERIRQEIS--DIASQTGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYT 450
Query: 286 NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345
N G DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++R++ + +RT+R+P H
Sbjct: 451 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 510
Query: 346 LHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSL 404
+ E + L+R ++ L E+G P+ + +AE L+M +KVR KV + +E SL
Sbjct: 511 MIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR-------KVMKIAKEPI-SL 562
Query: 405 NGLPGETHHIHCG 417
G+ H G
Sbjct: 563 ETPIGDEEDSHLG 575
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 111/187 (59%), Gaps = 2/187 (1%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E V L+ ++ + ++ + +L+E L PS + A ++ ++
Sbjct: 59 AFFKEMSRYPLLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQK 118
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
+ + L A+ K++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +K
Sbjct: 119 QFEHRLHRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNK 178
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRI 372
G+K STY YWWIRQ ++R + ++RT+RLP H+ E+L ++ A+ L++K P+ +
Sbjct: 179 GYKFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKEL 238
Query: 373 AEYLNMS 379
A+ L +S
Sbjct: 239 ADELEVS 245
>gi|255327076|ref|ZP_05368152.1| RNA polymerase sigma factor SigA [Rothia mucilaginosa ATCC 25296]
gi|255296293|gb|EET75634.1| RNA polymerase sigma factor SigA [Rothia mucilaginosa ATCC 25296]
Length = 457
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 119/203 (58%), Gaps = 16/203 (7%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL P M+
Sbjct: 151 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL------AENPDMD 203
Query: 243 Q-LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
+ L +LR ++ + A+ L+ +N+RLV+S+A+RY G DL+Q G +G
Sbjct: 204 KDLKKALRW-------VIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLG 256
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRL 360
L+R +EKFD SKGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L
Sbjct: 257 LIRAVEKFDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQML 316
Query: 361 EEKGVTPSVDRIAEYLNMSQKKV 383
++ G P+ + + + L+M+ +KV
Sbjct: 317 QDLGREPTPEELGKELDMTPEKV 339
>gi|19745866|ref|NP_607002.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS8232]
gi|19748016|gb|AAL97501.1| putative RNA polymerase sigma 42 protein [Streptococcus pyogenes
MGAS8232]
Length = 369
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|323484891|ref|ZP_08090246.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323693741|ref|ZP_08107938.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|355624161|ref|ZP_09047550.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
gi|323401772|gb|EGA94115.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323502192|gb|EGB18057.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|354822100|gb|EHF06474.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
Length = 374
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+E+L+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+K+STY WW
Sbjct: 138 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 197
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV ++E L MS+ KV
Sbjct: 198 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELSEALEMSEDKV 257
>gi|295394756|ref|ZP_06804971.1| DNA-directed RNA polymerase sigma subunit RpoD [Brevibacterium
mcbrellneri ATCC 49030]
gi|294972352|gb|EFG48212.1| DNA-directed RNA polymerase sigma subunit RpoD [Brevibacterium
mcbrellneri ATCC 49030]
Length = 473
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+K+I+ G+ E L E + A LR
Sbjct: 177 VKDYLKQIGKVALLNAAEEVDLAKRIEAGM--------YAEHLVDEGKVTD-ARDLR--- 224
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ + I+ + +A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 225 -DYKWIIHDGRIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 283
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 284 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 343
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ ++V
Sbjct: 344 LAKELDMTPERV 355
>gi|357410757|ref|YP_004922493.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320008126|gb|ADW02976.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 515
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 117/192 (60%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 325
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 326 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 385
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 386 LAKELDMTPEKV 397
>gi|88856913|ref|ZP_01131565.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
gi|88813881|gb|EAR23751.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
Length = 454
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 116/192 (60%), Gaps = 12/192 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+ +I+ GL +D +K PS ++ ++L
Sbjct: 156 VKDYLKQIGKVALLNAAQEVELAMRIEAGLFAEDKLAEMK------PS--EVRSTLG--- 204
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
ELQ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 205 RELQWVAKDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYT 264
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 265 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 324
Query: 372 IAEYLNMSQKKV 383
++ L+M+ +KV
Sbjct: 325 LSRELDMTPEKV 336
>gi|15674827|ref|NP_269001.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes SF370]
gi|50913963|ref|YP_059935.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS10394]
gi|71903245|ref|YP_280048.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS6180]
gi|71910413|ref|YP_281963.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS5005]
gi|94988285|ref|YP_596386.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS9429]
gi|94992161|ref|YP_600260.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS2096]
gi|94994083|ref|YP_602181.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS10750]
gi|139474032|ref|YP_001128748.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes str.
Manfredo]
gi|209559154|ref|YP_002285626.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes NZ131]
gi|306827613|ref|ZP_07460893.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
pyogenes ATCC 10782]
gi|383479781|ref|YP_005388675.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS15252]
gi|383493698|ref|YP_005411374.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS1882]
gi|386362456|ref|YP_006071787.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes Alab49]
gi|410680280|ref|YP_006932682.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes A20]
gi|417857191|ref|ZP_12502250.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892179|ref|ZP_16322879.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes NS88.2]
gi|13621959|gb|AAK33722.1| putative RNA polymerase sigma 42 protein [Streptococcus pyogenes M1
GAS]
gi|50903037|gb|AAT86752.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes MGAS10394]
gi|71802340|gb|AAX71693.1| RNA polymerase sigma factor [Streptococcus pyogenes MGAS6180]
gi|71853195|gb|AAZ51218.1| RNA polymerase sigma factor [Streptococcus pyogenes MGAS5005]
gi|94541793|gb|ABF31842.1| RNA polymerase sigma factor [Streptococcus pyogenes MGAS9429]
gi|94543672|gb|ABF33720.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes MGAS10270]
gi|94545669|gb|ABF35716.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes MGAS2096]
gi|94547591|gb|ABF37637.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes MGAS10750]
gi|134272279|emb|CAM30532.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes str.
Manfredo]
gi|209540355|gb|ACI60931.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes NZ131]
gi|304430176|gb|EFM33205.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
pyogenes ATCC 10782]
gi|350276865|gb|AEQ24233.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes Alab49]
gi|378927771|gb|AFC65977.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS15252]
gi|378929426|gb|AFC67843.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS1882]
gi|379982064|emb|CCG26601.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes NS88.2]
gi|387934146|gb|EIK42259.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395453652|dbj|BAM29991.1| RNA polymerase sigma factor [Streptococcus pyogenes M1 476]
gi|409692869|gb|AFV37729.1| RNA polymerase sigma factor rpoD [Streptococcus pyogenes A20]
Length = 369
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|309790033|ref|ZP_07684607.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227888|gb|EFO81542.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 358
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 14/229 (6%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
+ PE I++ ++ Y+ + LL+ E L+ +I+ G + +++L E+
Sbjct: 53 LEPEAIEDSIQIYLHEIGQVALLSAEEERDLAMQIRAG---KEAQMQL--------DTER 101
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303
A +R +L+ + AR +L+ +N+RLV+S+A++Y N DLVQ G IGL+
Sbjct: 102 FANG--AARAQLELTVARGHEARRRLIQANLRLVVSVAKKYINSPMAFMDLVQEGNIGLM 159
Query: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK 363
R +EKFD +KG + STY WWIRQ VSR++ E SR +RLP HL E L +R A +LE++
Sbjct: 160 RAVEKFDHTKGNRFSTYATWWIRQAVSRSIAEQSRVIRLPVHLSESLVQMRRAIYKLEQQ 219
Query: 364 -GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGET 411
P+ IA + +S +KV+ +A + SL++ G GE
Sbjct: 220 FEREPTAQEIAHSMGLSLRKVKRLLQASAQPVSLEQPLNNEQEGRVGEV 268
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 277 QRRDMMWICRDGGRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 394
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 395 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 425
>gi|291453499|ref|ZP_06592889.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|359149807|ref|ZP_09182739.1| RNA polymerase principal sigma factor hrdD [Streptomyces sp. S4]
gi|421740810|ref|ZP_16179040.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|17366575|sp|Q59914.1|HRDD_STRGR RecName: Full=RNA polymerase principal sigma factor HrdD
gi|510454|emb|CAA56305.1| sigma factor [Streptomyces griseus]
gi|291356448|gb|EFE83350.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|406690772|gb|EKC94563.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 332
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 12/191 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A+ V LS+ I+ G+ G E + S SR EL
Sbjct: 38 YLDEIARTPLLDAAKEVELSQTIEAGVYA-----------GKILDGEVDSDSAGASREEL 86
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
++++ E A++ + SN+RLV+++A+RY G + DL+Q G GL+R +EKFD +KGF
Sbjct: 87 EALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGF 146
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAE 374
K STY WWIRQ ++R++ + SRT+RLP HL E LG IR + E G P IA
Sbjct: 147 KFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAA 206
Query: 375 YLNMSQKKVRN 385
L+ + ++V +
Sbjct: 207 ELSSTPERVTD 217
>gi|445381040|ref|ZP_21427050.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus MTCC
5460]
gi|445394106|ref|ZP_21428784.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus MTCC
5461]
gi|444749031|gb|ELW73968.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus MTCC
5461]
gi|444749087|gb|ELW74017.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus MTCC
5460]
Length = 369
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|373106378|ref|ZP_09520681.1| RNA polymerase sigma factor RpoD [Stomatobaculum longum]
gi|371652753|gb|EHO18161.1| RNA polymerase sigma factor RpoD [Stomatobaculum longum]
Length = 413
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++KL+ +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD KGFK+STY WW
Sbjct: 177 AKKKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 236
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IRQ V+RAL + +RT+R+P H+ E + + + +L E G PSV +A+ L+M+++KV
Sbjct: 237 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELAKALDMTEEKV 296
>gi|21910055|ref|NP_664323.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS315]
gi|28896247|ref|NP_802597.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes SSI-1]
gi|21904246|gb|AAM79126.1| putative RNA polymerase sigma 42 protein RpoD [Streptococcus
pyogenes MGAS315]
gi|28811498|dbj|BAC64430.1| putative RNA polymerase sigma 42 protein [Streptococcus pyogenes
SSI-1]
Length = 369
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323
+A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 324 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
WIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 383 VR 384
VR
Sbjct: 250 VR 251
>gi|308270755|emb|CBX27365.1| RNA polymerase sigma factor rpoD [uncultured Desulfobacterium sp.]
Length = 568
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 260 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 319
+ +A+ +L +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K ST
Sbjct: 325 LNAKIAKSELTRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 384
Query: 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNM 378
Y WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E+G PS + IAE + +
Sbjct: 385 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEQGREPSPEEIAEKMEI 444
Query: 379 SQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
+KVR KV + RE SL GE H G
Sbjct: 445 PLEKVR-------KVLKIAREPI-SLETPIGEEEDSHLG 475
>gi|347951822|gb|AEP33047.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951824|gb|AEP33048.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951826|gb|AEP33049.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951828|gb|AEP33050.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951830|gb|AEP33051.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
Length = 265
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 20/195 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 19 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 62
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 63 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKF 122
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
D +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+
Sbjct: 123 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 182
Query: 369 VDRIAEYLNMSQKKV 383
+ ++ L+M+ +KV
Sbjct: 183 PEELSRELDMTPEKV 197
>gi|24379277|ref|NP_721232.1| RNA polymerase sigma factor RpoD [Streptococcus mutans UA159]
gi|290580718|ref|YP_003485110.1| DNA-dependent RNA polymerase sigma subunit [Streptococcus mutans
NN2025]
gi|387786373|ref|YP_006251469.1| RNA polymerase sigma factor RpoD [Streptococcus mutans LJ23]
gi|397649517|ref|YP_006490044.1| RNA polymerase sigma factor RpoD [Streptococcus mutans GS-5]
gi|449863184|ref|ZP_21778115.1| RNA polymerase sigma factor RpoD [Streptococcus mutans U2B]
gi|449871415|ref|ZP_21781101.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 8ID3]
gi|449875272|ref|ZP_21782119.1| RNA polymerase sigma factor RpoD [Streptococcus mutans S1B]
gi|449880747|ref|ZP_21784053.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SA38]
gi|449887577|ref|ZP_21786915.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SA41]
gi|449890943|ref|ZP_21787629.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SF12]
gi|449897824|ref|ZP_21790221.1| RNA polymerase sigma factor RpoD [Streptococcus mutans R221]
gi|449904034|ref|ZP_21792468.1| RNA polymerase sigma factor RpoD [Streptococcus mutans M230]
gi|449909967|ref|ZP_21794460.1| RNA polymerase sigma factor RpoD [Streptococcus mutans OMZ175]
gi|449915272|ref|ZP_21796162.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 15JP3]
gi|449919308|ref|ZP_21797840.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 1SM1]
gi|449926929|ref|ZP_21801012.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 4SM1]
gi|449931286|ref|ZP_21802272.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 3SN1]
gi|449935919|ref|ZP_21803701.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 2ST1]
gi|449944107|ref|ZP_21806605.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 11A1]
gi|449951017|ref|ZP_21808489.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 11SSST2]
gi|449958846|ref|ZP_21809933.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 4VF1]
gi|449964897|ref|ZP_21811545.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 15VF2]
gi|449970983|ref|ZP_21814154.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 2VS1]
gi|449973718|ref|ZP_21814873.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 11VS1]
gi|449979648|ref|ZP_21816820.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 5SM3]
gi|449985666|ref|ZP_21819787.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NFSM2]
gi|449989742|ref|ZP_21821232.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NVAB]
gi|449994267|ref|ZP_21822430.1| RNA polymerase sigma factor RpoD [Streptococcus mutans A9]
gi|450001754|ref|ZP_21825809.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N29]
gi|450005984|ref|ZP_21826971.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NMT4863]
gi|450010162|ref|ZP_21828536.1| RNA polymerase sigma factor RpoD [Streptococcus mutans A19]
gi|450025113|ref|ZP_21831578.1| RNA polymerase sigma factor RpoD [Streptococcus mutans U138]
gi|450030723|ref|ZP_21833380.1| RNA polymerase sigma factor RpoD [Streptococcus mutans G123]
gi|450034902|ref|ZP_21834690.1| RNA polymerase sigma factor RpoD [Streptococcus mutans M21]
gi|450040110|ref|ZP_21836620.1| RNA polymerase sigma factor RpoD [Streptococcus mutans T4]
gi|450050063|ref|ZP_21840067.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NFSM1]
gi|450057450|ref|ZP_21842589.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML4]
gi|450061370|ref|ZP_21843773.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML5]
gi|450066763|ref|ZP_21846164.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML9]
gi|450072469|ref|ZP_21848608.1| RNA polymerase sigma factor RpoD [Streptococcus mutans M2A]
gi|450077229|ref|ZP_21850300.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N3209]
gi|450081743|ref|ZP_21851910.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N66]
gi|450087823|ref|ZP_21854474.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NV1996]
gi|450098290|ref|ZP_21857942.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SF1]
gi|450104894|ref|ZP_21859527.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SF14]
gi|450111345|ref|ZP_21862647.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SM6]
gi|450115262|ref|ZP_21863830.1| RNA polymerase sigma factor RpoD [Streptococcus mutans ST1]
gi|450121109|ref|ZP_21866136.1| RNA polymerase sigma factor RpoD [Streptococcus mutans ST6]
gi|450126341|ref|ZP_21868132.1| RNA polymerase sigma factor RpoD [Streptococcus mutans U2A]
gi|450131685|ref|ZP_21869646.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML8]
gi|450136993|ref|ZP_21871344.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML1]
gi|450143265|ref|ZP_21873332.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 1ID3]
gi|450153093|ref|ZP_21877018.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 21]
gi|450161001|ref|ZP_21880302.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 66-2A]
gi|450165105|ref|ZP_21881682.1| RNA polymerase sigma factor RpoD [Streptococcus mutans B]
gi|450169639|ref|ZP_21883097.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SM4]
gi|450176137|ref|ZP_21885591.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SM1]
gi|450179918|ref|ZP_21886878.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 24]
gi|18202024|sp|O33662.1|RPOD_STRMU RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-42
gi|24377195|gb|AAN58538.1|AE014923_2 DNA-dependent RNA polymerase sigma subunit; major sigma factor
(sigma 70/42) [Streptococcus mutans UA159]
gi|2258087|dbj|BAA21507.1| sigma 42 protein [Streptococcus mutans]
gi|254997617|dbj|BAH88218.1| DNA-dependent RNA polymerase sigma subunit [Streptococcus mutans
NN2025]
gi|379132774|dbj|BAL69526.1| RNA polymerase sigma factor RpoD [Streptococcus mutans LJ23]
gi|392603086|gb|AFM81250.1| RNA polymerase sigma factor RpoD [Streptococcus mutans GS-5]
gi|449148806|gb|EMB52643.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 11A1]
gi|449152423|gb|EMB56130.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 1ID3]
gi|449153691|gb|EMB57341.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML8]
gi|449155420|gb|EMB58934.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 8ID3]
gi|449156738|gb|EMB60197.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 15JP3]
gi|449159570|gb|EMB62899.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 1SM1]
gi|449160147|gb|EMB63428.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 4SM1]
gi|449162824|gb|EMB65945.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 3SN1]
gi|449166055|gb|EMB69014.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 2ST1]
gi|449166706|gb|EMB69632.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 11SSST2]
gi|449169691|gb|EMB72453.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 4VF1]
gi|449171995|gb|EMB74637.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 15VF2]
gi|449172655|gb|EMB75273.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 2VS1]
gi|449177744|gb|EMB80033.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 5SM3]
gi|449178868|gb|EMB81106.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NFSM2]
gi|449179207|gb|EMB81429.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 11VS1]
gi|449182241|gb|EMB84277.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NVAB]
gi|449184163|gb|EMB86119.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N29]
gi|449185558|gb|EMB87436.1| RNA polymerase sigma factor RpoD [Streptococcus mutans A9]
gi|449188024|gb|EMB89762.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NMT4863]
gi|449190392|gb|EMB91968.1| RNA polymerase sigma factor RpoD [Streptococcus mutans A19]
gi|449191303|gb|EMB92809.1| RNA polymerase sigma factor RpoD [Streptococcus mutans U138]
gi|449192464|gb|EMB93885.1| RNA polymerase sigma factor RpoD [Streptococcus mutans G123]
gi|449196018|gb|EMB97316.1| RNA polymerase sigma factor RpoD [Streptococcus mutans M21]
gi|449199564|gb|EMC00625.1| RNA polymerase sigma factor RpoD [Streptococcus mutans T4]
gi|449203090|gb|EMC03968.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NFSM1]
gi|449205235|gb|EMC05990.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML4]
gi|449207455|gb|EMC08130.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML5]
gi|449208562|gb|EMC09146.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML9]
gi|449211167|gb|EMC11582.1| RNA polymerase sigma factor RpoD [Streptococcus mutans M2A]
gi|449211419|gb|EMC11823.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N3209]
gi|449214960|gb|EMC15188.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N66]
gi|449217362|gb|EMC17423.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NV1996]
gi|449221686|gb|EMC21448.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SF1]
gi|449223915|gb|EMC23575.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SM6]
gi|449225365|gb|EMC24972.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SF14]
gi|449228223|gb|EMC27602.1| RNA polymerase sigma factor RpoD [Streptococcus mutans ST1]
gi|449229502|gb|EMC28813.1| RNA polymerase sigma factor RpoD [Streptococcus mutans ST6]
gi|449231574|gb|EMC30747.1| RNA polymerase sigma factor RpoD [Streptococcus mutans U2A]
gi|449235924|gb|EMC34866.1| RNA polymerase sigma factor RpoD [Streptococcus mutans NLML1]
gi|449239233|gb|EMC37960.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 66-2A]
gi|449239332|gb|EMC38057.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 21]
gi|449240959|gb|EMC39610.1| RNA polymerase sigma factor RpoD [Streptococcus mutans B]
gi|449245699|gb|EMC44027.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SM1]
gi|449246990|gb|EMC45282.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SM4]
gi|449248640|gb|EMC46871.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 24]
gi|449252525|gb|EMC50502.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SA41]
gi|449252586|gb|EMC50561.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SA38]
gi|449254106|gb|EMC52031.1| RNA polymerase sigma factor RpoD [Streptococcus mutans S1B]
gi|449256970|gb|EMC54780.1| RNA polymerase sigma factor RpoD [Streptococcus mutans SF12]
gi|449260012|gb|EMC57523.1| RNA polymerase sigma factor RpoD [Streptococcus mutans M230]
gi|449260671|gb|EMC58168.1| RNA polymerase sigma factor RpoD [Streptococcus mutans OMZ175]
gi|449260750|gb|EMC58244.1| RNA polymerase sigma factor RpoD [Streptococcus mutans R221]
gi|449265167|gb|EMC62494.1| RNA polymerase sigma factor RpoD [Streptococcus mutans U2B]
Length = 371
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 133 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 192
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 252
Query: 384 R 384
R
Sbjct: 253 R 253
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 14/203 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+TGL H L ++RL + + +L
Sbjct: 36 YLNGIGRTALLNAEQEVELAKQIETGLYAK-HVLATRKRLSA------------VKKRDL 82
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 83 AQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 142
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAE 374
K STY WWIRQ ++R + + SRT+RLP HL E++ + K L ++ G + D +A
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAA 202
Query: 375 YLNMSQKKVRNATEAIGKVFSLD 397
+ +K+ + + SLD
Sbjct: 203 ESGIPAEKIADLLDHSRDPVSLD 225
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 10/198 (5%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT +E V L+ KI+ G KL + E + ++
Sbjct: 155 LTGDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEAS-QKLEAADNGEIELTRAEMRRL 213
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
+RI + L+ A++ L+ +N+RL +SIA+RY G DL+Q G +GL+R +E
Sbjct: 214 MRIEQVGLE--------AKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 265
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L++ G
Sbjct: 266 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRD 325
Query: 367 PSVDRIAEYLNMSQKKVR 384
P+ + I E + ++ +VR
Sbjct: 326 PTPEEIGEEMGITADRVR 343
>gi|363890577|ref|ZP_09317904.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
gi|361964953|gb|EHL17953.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
Length = 432
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K+V +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 195 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 254
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + LIR + ++E G P D IAE +NM Q+K+
Sbjct: 255 IRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEKI 314
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 125/212 (58%), Gaps = 16/212 (7%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL-GCEPSMEQLAASLR 249
+ ++ Y+K + LL E V L+K+I+ GL ER+ E E+L +R
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA-------AERVRNAEEEGEKLVTQMR 216
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKF
Sbjct: 217 ---RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 273
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVT 366
D +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G
Sbjct: 274 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGRE 331
Query: 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
P+ + +A+ +++S +KV + + SLD+
Sbjct: 332 PTPEELAKEMDISPEKVLEIQQYAREPISLDQ 363
>gi|450044960|ref|ZP_21838164.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N34]
gi|449201072|gb|EMC02084.1| RNA polymerase sigma factor RpoD [Streptococcus mutans N34]
Length = 371
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 133 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 192
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 252
Query: 384 R 384
R
Sbjct: 253 R 253
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + LLT AE + L+ KI+ G++ + L E G E +
Sbjct: 113 LTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATEE-LEKAEDEGIELERRE---K 168
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307
R+ R E I A+++L+ +N+RLV+SIA+RY G DL+Q G +GL+R +E
Sbjct: 169 RRLGRIEQVGID-----AKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 223
Query: 308 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVT 366
KFD +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G
Sbjct: 224 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRE 283
Query: 367 PSVDRIAEYLNMSQKKVRN 385
PS + I + + + ++VR
Sbjct: 284 PSPEEIGKEMGLPAERVRE 302
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 14/211 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 218 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 268
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD
Sbjct: 269 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 328
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTP 367
+KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P
Sbjct: 329 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREP 386
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
+ + +A+ ++++ +KV + + SLD+
Sbjct: 387 TPEELAKEMDITPEKVLEIQQYAREPISLDQ 417
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 17/185 (9%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSL-DDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y+ + LLT AE + L +++T +SL +D +++ E S E + R+ R
Sbjct: 23 YLSSIGRVPLLTPAEEIELGNQVQTLMSLTEDGQIK-------EQSKEFTSHQRRLIRI- 74
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314
A+E+++ +N+RLV+S+A++Y G ++ DLVQ G +GL R +EKFD ++G
Sbjct: 75 -------GRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKFDPTRG 127
Query: 315 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 373
+K STY +WWIRQ ++RA+ SRT+RLP HL ERL IR L L K G PS IA
Sbjct: 128 YKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLATIRKVSLDLAHKLGAMPSRIEIA 187
Query: 374 EYLNM 378
E + +
Sbjct: 188 EAMEI 192
>gi|383761703|ref|YP_005440685.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381381971|dbj|BAL98787.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 433
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 118/210 (56%), Gaps = 15/210 (7%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + + Y+K + LLT E V L+K+++ G + R K G E E
Sbjct: 135 IDDSISLYLKEIGRVPLLTAEEEVELAKRMERG-----REARKKLSEGVEDWEE------ 183
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
R L + + A+E L+ +N RLV+S+A++Y G DL+Q G IGL+R ++K
Sbjct: 184 ---RERLLWYVRDGQAAQEHLIKANSRLVVSVAKKYVGRGVPFLDLIQEGNIGLIRAVKK 240
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
FD S+G+K STY WWIRQ V+RA+ + RT+R+P H++E++ L R ++ ++E G P
Sbjct: 241 FDYSRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMYEQINRLTRTSRQLVQELGRDP 300
Query: 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ + IAE L +S +KV + + SL+
Sbjct: 301 TTEEIAEELGVSPRKVEHIMRVSQRPLSLE 330
>gi|123968168|ref|YP_001009026.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123198278|gb|ABM69919.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. AS9601]
Length = 307
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ +++ +N+RLV+++A+RY G ++ DL+Q G +GL R +EK+D S+G + STY YWW
Sbjct: 65 AKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYWW 124
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKV 383
IRQG++RAL SRT+R+P +++E+L +R+AK +L + KG+ P+ D +AE + +++++V
Sbjct: 125 IRQGLNRALSTQSRTIRIPVNINEKLTKLRSAKSKLMQLKGIPPTSDELAEEMKITKEEV 184
>gi|317124635|ref|YP_004098747.1| RNA polymerase sigma-70 subunit RpoD [Intrasporangium calvum DSM
43043]
gi|315588723|gb|ADU48020.1| RNA polymerase, sigma 70 subunit, RpoD [Intrasporangium calvum DSM
43043]
Length = 587
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 115/192 (59%), Gaps = 14/192 (7%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + KL E++ +++ R
Sbjct: 291 VKDYLKQIGKVALLNAEQEVELAKRIEAGL-FAEEKLNSGEKI-----------DMKLKR 338
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
EL I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 339 -ELWWIAQDGKKAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 397
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDR 371
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ +
Sbjct: 398 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 457
Query: 372 IAEYLNMSQKKV 383
+A+ L+M+ +KV
Sbjct: 458 LAKELDMTPEKV 469
>gi|1519642|gb|AAB07554.1| SigD [Chloroflexus aurantiacus J-10-fl]
Length = 398
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 5/153 (3%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR ++ +N+RLV+SIA+RY + G + DL+Q G +GLLR IEKFD +KG+K STY WW
Sbjct: 159 ARHEMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDYTKGYKFSTYATWW 218
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
I+Q +SRAL + SR +RLP HL E L I++A+ +L + G P+ +A +L MS++K+
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 384 ----RNATEAIGKVFSLDREAFPSLNGLPGETH 412
R A + + + EA +L + H
Sbjct: 279 ATVRRTAQDPVSLATPVGEEANSTLADFIPDPH 311
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 18/213 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLAASL 248
+ ++ Y+K + LLT E V L+K+I+ GL +LR E G P M
Sbjct: 145 DSVRAYLKQIGKVALLTAEEEVDLAKRIEAGL-YGAERLRQVEEEGQKLSPQM------- 196
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
R +L I+ + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EK
Sbjct: 197 ---RRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 253
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGV 365
FD +KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G
Sbjct: 254 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGR 311
Query: 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDR 398
P+ + +A+ ++++ KV + + SLD+
Sbjct: 312 EPTPEELAKEMDITPDKVLEIQQYAREPISLDQ 344
>gi|312863004|ref|ZP_07723242.1| RNA polymerase sigma factor RpoD [Streptococcus vestibularis F0396]
gi|311100540|gb|EFQ58745.1| RNA polymerase sigma factor RpoD [Streptococcus vestibularis F0396]
Length = 369
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|55823393|ref|YP_141834.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus
CNRZ1066]
gi|116628187|ref|YP_820806.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus LMD-9]
gi|386087088|ref|YP_006002962.1| RNA polymerase sigma factor [Streptococcus thermophilus ND03]
gi|386345168|ref|YP_006041332.1| lysyl-tRNA synthetase [Streptococcus thermophilus JIM 8232]
gi|387910190|ref|YP_006340496.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus
MN-ZLW-002]
gi|55739378|gb|AAV63019.1| DNA directed RNA polymerase sigma 42 protein [Streptococcus
thermophilus CNRZ1066]
gi|116101464|gb|ABJ66610.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Streptococcus thermophilus LMD-9]
gi|312278801|gb|ADQ63458.1| RNA polymerase sigma factor [Streptococcus thermophilus ND03]
gi|339278629|emb|CCC20377.1| lysyl-tRNA synthetase [Streptococcus thermophilus JIM 8232]
gi|387575125|gb|AFJ83831.1| RNA polymerase sigma factor RpoD [Streptococcus thermophilus
MN-ZLW-002]
Length = 369
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
>gi|450091610|ref|ZP_21855570.1| RNA polymerase sigma factor RpoD [Streptococcus mutans W6]
gi|450147780|ref|ZP_21875278.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 14D]
gi|449219183|gb|EMC19160.1| RNA polymerase sigma factor RpoD [Streptococcus mutans W6]
gi|449236640|gb|EMC35550.1| RNA polymerase sigma factor RpoD [Streptococcus mutans 14D]
Length = 371
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 133 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 192
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 252
Query: 384 R 384
R
Sbjct: 253 R 253
>gi|239626174|ref|ZP_04669205.1| DNA-directed RNA polymerase sigma subunit [Clostridiales bacterium
1_7_47_FAA]
gi|239520404|gb|EEQ60270.1| DNA-directed RNA polymerase sigma subunit [Clostridiales bacterium
1_7_47FAA]
Length = 409
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 11/148 (7%)
Query: 261 ECSLAREK----------LVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310
E LAR K LV +N+RLV+SIA+RY G DLVQ G +GL++ +EKFD
Sbjct: 157 ETDLARRKSEGDAEAGRQLVEANLRLVVSIAKRYTGRGMGFLDLVQEGNLGLMKAVEKFD 216
Query: 311 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSV 369
SKG+++STY WW++Q ++R+L + SRT+RLP H+ E + IR A+ L + G PS
Sbjct: 217 YSKGYRLSTYATWWVKQSITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVRLGREPST 276
Query: 370 DRIAEYLNMSQKKVRNATEAIGKVFSLD 397
+ IAE + M +K+V +A G SL+
Sbjct: 277 EEIAEEVGMPEKRVTELIQASGDTVSLE 304
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+ + ++ Y++ + LL + V L++ ++ G D + L E +E+LA
Sbjct: 99 VNDTVRLYLREIGLVPLLKGEQEVELARAMEDG---DKAQQELIENDHTLSDVERLALRR 155
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308
RI R E ARE L +N+RLV+S+A++Y G + DL+Q G +GL+R +EK
Sbjct: 156 RIDRGEQ---------AREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEK 206
Query: 309 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 367
F+ +KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + ++R A+ +E G P
Sbjct: 207 FNYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREP 266
Query: 368 SVDRIAEYLNMSQKKVRN 385
S + +A+ L+++ +KVR+
Sbjct: 267 SDEELAQALDLTVEKVRS 284
>gi|148657263|ref|YP_001277468.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148569373|gb|ABQ91518.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 345
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 117/212 (55%), Gaps = 14/212 (6%)
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
E I + + Y++ + LL+ E + L+ I+ G +ERL E LA
Sbjct: 43 ETIDDSTQMYLREIGQVSLLSAEEEITLANDIRAGREA-------QERLKSH-RFESLAE 94
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306
L + R +M+ AR +L+ +N+RLV+SIA++Y DLVQ G IGL+R +
Sbjct: 95 RLLLERR-----VMQAEEARRRLIQANLRLVVSIAKKYIGGPLSFMDLVQEGNIGLMRAV 149
Query: 307 EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GV 365
EKFD+ KG + STY WWIRQ ++RA+ E SR +RLP HL + + +R RLE+
Sbjct: 150 EKFDAGKGNRFSTYATWWIRQAITRAIAEQSRLIRLPVHLSDVIAQLRRVARRLEQSLER 209
Query: 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397
P+V+ IA ++M + KV+ +A + SL+
Sbjct: 210 EPTVEEIAAAIDMPEHKVKLLLQASAQPISLE 241
>gi|363893636|ref|ZP_09320731.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
gi|361963438|gb|EHL16510.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
Length = 432
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ K+V +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 195 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 254
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + LIR + ++E G P D IAE +NM Q+K+
Sbjct: 255 IRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEKI 314
>gi|357636066|ref|ZP_09133941.1| RNA polymerase sigma factor RpoD [Streptococcus macacae NCTC 11558]
gi|357584520|gb|EHJ51723.1| RNA polymerase sigma factor RpoD [Streptococcus macacae NCTC 11558]
Length = 370
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 191
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 251
Query: 384 R 384
R
Sbjct: 252 R 252
>gi|322421611|ref|YP_004200834.1| RpoD subfamily RNA polymerase sigma-70 factor [Geobacter sp. M18]
gi|320127998|gb|ADW15558.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M18]
Length = 583
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 9/157 (5%)
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
LA+ +LV +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 343 AKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYA 402
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 380
WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E G PS + IAE + +
Sbjct: 403 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMALPL 462
Query: 381 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHIHCG 417
KVR KV + +E SL GE H G
Sbjct: 463 DKVR-------KVLKIAKEPI-SLETPIGEEEDSHLG 491
>gi|228476995|ref|ZP_04061633.1| RNA polymerase sigma factor RpoD [Streptococcus salivarius SK126]
gi|322516348|ref|ZP_08069273.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
vestibularis ATCC 49124]
gi|340398343|ref|YP_004727368.1| RNA polymerase sigma factor [Streptococcus salivarius CCHSS3]
gi|387784602|ref|YP_006070685.1| rNA polymerase sigma factor [Streptococcus salivarius JIM8777]
gi|418017355|ref|ZP_12656914.1| RNA polymerase sigma factor RpoD [Streptococcus salivarius M18]
gi|419707740|ref|ZP_14235220.1| RNA polymerase sigma factor [Streptococcus salivarius PS4]
gi|421452880|ref|ZP_15902236.1| RNA polymerase sigma factor rpoD [Streptococcus salivarius K12]
gi|228251014|gb|EEK10185.1| RNA polymerase sigma factor RpoD [Streptococcus salivarius SK126]
gi|322125081|gb|EFX96474.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
vestibularis ATCC 49124]
gi|338742336|emb|CCB92841.1| RNA polymerase sigma factor [Streptococcus salivarius CCHSS3]
gi|338745484|emb|CCB95850.1| rNA polymerase sigma factor [Streptococcus salivarius JIM8777]
gi|345528048|gb|EGX31356.1| RNA polymerase sigma factor RpoD [Streptococcus salivarius M18]
gi|383282573|gb|EIC80557.1| RNA polymerase sigma factor [Streptococcus salivarius PS4]
gi|400181189|gb|EJO15456.1| RNA polymerase sigma factor rpoD [Streptococcus salivarius K12]
Length = 369
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 384 R 384
R
Sbjct: 251 R 251
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,928,415,250
Number of Sequences: 23463169
Number of extensions: 229339845
Number of successful extensions: 628605
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10486
Number of HSP's successfully gapped in prelim test: 1076
Number of HSP's that attempted gapping in prelim test: 610890
Number of HSP's gapped (non-prelim): 14342
length of query: 417
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 272
effective length of database: 8,957,035,862
effective search space: 2436313754464
effective search space used: 2436313754464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 78 (34.7 bits)