Query 014852
Match_columns 417
No_of_seqs 225 out of 1815
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugo_A RNA polymerase sigma fa 100.0 8.2E-35 2.8E-39 279.5 15.3 207 190-396 6-245 (245)
2 1l9z_H Sigma factor SIGA; heli 100.0 2.7E-32 9.3E-37 281.7 21.4 213 191-403 94-339 (438)
3 2a6h_F RNA polymerase sigma fa 100.0 7E-32 2.4E-36 277.4 22.3 210 191-403 79-324 (423)
4 3iyd_F RNA polymerase sigma fa 99.9 3.9E-25 1.3E-29 236.5 -1.4 141 265-405 375-516 (613)
5 1l0o_C Sigma factor; bergerat 99.8 7.5E-20 2.6E-24 168.1 5.8 160 200-400 4-164 (243)
6 1or7_A Sigma-24, RNA polymeras 99.7 1E-17 3.5E-22 150.3 12.4 128 264-394 23-184 (194)
7 1rp3_A RNA polymerase sigma fa 99.7 9.4E-17 3.2E-21 147.6 15.5 135 262-399 10-150 (239)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.7 1E-18 3.5E-23 155.8 1.2 130 264-394 27-179 (184)
9 1sig_A Sigma70, RNA polymerase 99.7 5.9E-17 2E-21 161.0 10.8 74 264-337 265-338 (339)
10 3mzy_A RNA polymerase sigma-H 99.5 1.1E-14 3.6E-19 126.1 7.0 106 288-394 1-152 (164)
11 2lfw_A PHYR sigma-like domain; 99.5 9.6E-17 3.3E-21 142.1 -7.3 126 266-394 3-137 (157)
12 3n0r_A Response regulator; sig 99.4 1.1E-14 3.7E-19 141.4 0.3 127 262-393 19-154 (286)
13 2o7g_A Probable RNA polymerase 99.3 7.6E-12 2.6E-16 104.0 8.5 73 264-339 24-96 (112)
14 1h3l_A RNA polymerase sigma fa 99.2 3.6E-11 1.2E-15 95.5 5.9 75 261-337 9-83 (87)
15 3clo_A Transcriptional regulat 97.8 2.5E-09 8.7E-14 101.8 -21.9 136 255-395 87-241 (258)
16 1l9z_H Sigma factor SIGA; heli 96.6 0.027 9.1E-07 58.2 14.4 44 350-394 380-423 (438)
17 3hug_A RNA polymerase sigma fa 95.7 0.0026 9E-08 50.9 1.0 30 365-394 52-81 (92)
18 2a6h_F RNA polymerase sigma fa 95.4 0.095 3.2E-06 53.5 11.4 44 350-394 365-408 (423)
19 1rp3_A RNA polymerase sigma fa 95.2 0.25 8.7E-06 44.3 12.6 30 365-394 202-231 (239)
20 3t72_q RNA polymerase sigma fa 94.6 0.013 4.4E-07 48.5 2.0 30 365-394 38-67 (99)
21 2o8x_A Probable RNA polymerase 94.2 0.0051 1.7E-07 45.9 -1.3 30 365-394 30-59 (70)
22 1x3u_A Transcriptional regulat 93.3 0.033 1.1E-06 42.5 1.9 33 364-396 29-61 (79)
23 2p7v_B Sigma-70, RNA polymeras 93.3 0.059 2E-06 40.4 3.4 30 365-394 24-53 (68)
24 1xsv_A Hypothetical UPF0122 pr 93.0 0.024 8.2E-07 47.6 0.8 30 365-394 40-69 (113)
25 1l0o_C Sigma factor; bergerat 92.4 0.024 8.3E-07 51.0 0.0 28 367-394 215-242 (243)
26 1tty_A Sigma-A, RNA polymerase 92.3 0.073 2.5E-06 42.1 2.8 30 365-394 37-66 (87)
27 1ku3_A Sigma factor SIGA; heli 92.0 0.086 2.9E-06 40.0 2.8 30 365-394 29-58 (73)
28 3iyd_F RNA polymerase sigma fa 92.0 0.026 9E-07 60.2 -0.3 59 189-277 94-152 (613)
29 3c57_A Two component transcrip 91.7 0.02 6.7E-07 46.3 -1.3 31 366-396 42-72 (95)
30 1s7o_A Hypothetical UPF0122 pr 90.6 0.058 2E-06 45.3 0.5 29 366-394 38-66 (113)
31 2jpc_A SSRB; DNA binding prote 90.4 0.12 4.3E-06 37.3 2.1 31 366-396 13-43 (61)
32 1je8_A Nitrate/nitrite respons 90.2 0.15 5.3E-06 39.8 2.6 31 365-395 35-65 (82)
33 2jt1_A PEFI protein; solution 88.7 0.65 2.2E-05 36.6 5.3 28 364-391 22-49 (77)
34 2rnj_A Response regulator prot 88.0 0.18 6.3E-06 39.9 1.6 31 366-396 44-74 (91)
35 3ulq_B Transcriptional regulat 87.3 0.36 1.2E-05 38.7 3.0 31 366-396 44-74 (90)
36 1fse_A GERE; helix-turn-helix 86.8 0.32 1.1E-05 36.2 2.3 31 366-396 26-56 (74)
37 1p4w_A RCSB; solution structur 86.2 0.38 1.3E-05 39.3 2.7 31 367-397 50-80 (99)
38 1tc3_C Protein (TC3 transposas 85.2 0.61 2.1E-05 31.2 2.9 25 367-391 22-46 (51)
39 2heo_A Z-DNA binding protein 1 85.0 1 3.6E-05 33.9 4.4 35 357-391 16-50 (67)
40 2x48_A CAG38821; archeal virus 84.3 1.5 5.1E-05 30.9 4.8 23 367-389 32-54 (55)
41 1xn7_A Hypothetical protein YH 81.7 2.5 8.6E-05 33.2 5.6 36 355-391 6-41 (78)
42 1qbj_A Protein (double-strande 80.8 2.9 9.8E-05 33.1 5.6 28 364-391 25-52 (81)
43 1qgp_A Protein (double strande 79.3 2.9 9.9E-05 32.5 5.1 28 364-391 29-56 (77)
44 1oyi_A Double-stranded RNA-bin 79.2 1.8 6.3E-05 34.6 4.0 34 356-391 22-55 (82)
45 2k02_A Ferrous iron transport 77.7 2.9 9.9E-05 33.7 4.8 36 355-391 6-41 (87)
46 1l3l_A Transcriptional activat 76.9 2 6.9E-05 39.3 4.2 32 365-396 187-218 (234)
47 2q0o_A Probable transcriptiona 76.8 1.1 3.8E-05 41.1 2.4 31 366-396 190-220 (236)
48 3k2z_A LEXA repressor; winged 76.6 4.3 0.00015 36.3 6.2 42 350-391 7-49 (196)
49 3szt_A QCSR, quorum-sensing co 74.6 1.7 5.8E-05 40.2 3.0 31 366-396 190-220 (237)
50 1sfu_A 34L protein; protein/Z- 73.0 3.3 0.00011 32.7 3.8 44 348-392 12-55 (75)
51 1j5y_A Transcriptional regulat 72.6 7.4 0.00025 34.6 6.7 41 351-391 21-61 (187)
52 1jhg_A Trp operon repressor; c 72.6 4.6 0.00016 33.5 4.8 27 365-392 57-83 (101)
53 1q1h_A TFE, transcription fact 71.3 5 0.00017 32.2 4.8 33 359-391 26-58 (110)
54 3qp6_A CVIR transcriptional re 69.6 2.2 7.7E-05 40.2 2.6 31 366-396 212-242 (265)
55 1jko_C HIN recombinase, DNA-in 68.8 3.8 0.00013 27.6 3.0 23 367-389 22-44 (52)
56 3i4p_A Transcriptional regulat 68.3 5.2 0.00018 34.7 4.5 35 356-391 8-42 (162)
57 2htj_A P fimbrial regulatory p 67.9 8.5 0.00029 29.3 5.2 27 365-391 13-39 (81)
58 3bpv_A Transcriptional regulat 67.9 25 0.00084 28.3 8.4 27 365-391 42-68 (138)
59 1zx4_A P1 PARB, plasmid partit 67.1 8.8 0.0003 35.2 5.9 26 366-391 24-49 (192)
60 2cfx_A HTH-type transcriptiona 66.6 7.9 0.00027 32.7 5.2 34 357-391 11-44 (144)
61 2w7n_A TRFB transcriptional re 66.0 3.9 0.00014 33.8 3.1 29 366-394 34-62 (101)
62 2lnb_A Z-DNA-binding protein 1 65.5 7.4 0.00025 31.0 4.4 45 345-392 16-60 (80)
63 2dbb_A Putative HTH-type trans 65.5 8.6 0.00029 32.5 5.3 34 357-391 15-48 (151)
64 2p5v_A Transcriptional regulat 65.3 8.2 0.00028 33.2 5.2 35 356-391 15-49 (162)
65 1uxc_A FRUR (1-57), fructose r 65.0 4.9 0.00017 30.2 3.2 24 367-390 1-24 (65)
66 1jgs_A Multiple antibiotic res 64.4 24 0.0008 28.5 7.6 66 318-391 8-73 (138)
67 2cyy_A Putative HTH-type trans 63.8 9.4 0.00032 32.4 5.2 34 357-391 13-46 (151)
68 3eco_A MEPR; mutlidrug efflux 62.9 26 0.00088 28.3 7.6 65 320-391 7-72 (139)
69 2e1c_A Putative HTH-type trans 62.7 9.6 0.00033 33.6 5.2 35 356-391 32-66 (171)
70 2ia0_A Putative HTH-type trans 62.5 9.7 0.00033 33.5 5.2 35 356-391 22-56 (171)
71 1lj9_A Transcriptional regulat 62.3 39 0.0014 27.3 8.7 64 320-391 5-68 (144)
72 2l0k_A Stage III sporulation p 62.1 11 0.00039 30.4 5.1 23 367-389 21-43 (93)
73 2cg4_A Regulatory protein ASNC 61.9 11 0.00036 32.0 5.2 34 357-391 14-47 (152)
74 2pex_A Transcriptional regulat 61.6 33 0.0011 28.3 8.2 65 319-391 22-86 (153)
75 3bro_A Transcriptional regulat 61.6 30 0.001 27.8 7.8 26 366-391 50-75 (141)
76 2x4h_A Hypothetical protein SS 61.4 16 0.00056 29.9 6.2 37 355-391 20-56 (139)
77 3fm5_A Transcriptional regulat 61.2 23 0.00079 29.2 7.2 66 319-391 14-79 (150)
78 4ham_A LMO2241 protein; struct 61.0 7.6 0.00026 32.7 4.0 28 364-391 36-63 (134)
79 3kz3_A Repressor protein CI; f 60.8 11 0.00037 28.3 4.5 25 365-389 24-48 (80)
80 2fa5_A Transcriptional regulat 59.8 29 0.001 28.8 7.6 27 365-391 62-88 (162)
81 3klo_A Transcriptional regulat 59.6 15 0.00053 32.3 6.1 33 365-397 173-205 (225)
82 3neu_A LIN1836 protein; struct 59.4 8.7 0.0003 32.0 4.1 28 364-391 35-62 (125)
83 2w25_A Probable transcriptiona 59.1 13 0.00044 31.4 5.2 34 357-391 13-46 (150)
84 3r0a_A Putative transcriptiona 58.6 13 0.00045 30.7 5.1 35 357-391 32-67 (123)
85 2p5k_A Arginine repressor; DNA 58.5 17 0.00057 25.9 5.1 27 364-390 17-48 (64)
86 3nrv_A Putative transcriptiona 58.5 25 0.00084 28.8 6.8 26 366-391 54-79 (148)
87 3deu_A Transcriptional regulat 58.5 31 0.001 29.4 7.6 66 319-391 28-93 (166)
88 2nnn_A Probable transcriptiona 58.3 49 0.0017 26.4 8.5 26 366-391 52-77 (140)
89 1i1g_A Transcriptional regulat 57.8 15 0.0005 30.5 5.3 34 357-391 10-43 (141)
90 3oop_A LIN2960 protein; protei 57.5 45 0.0015 27.1 8.2 65 319-391 12-76 (143)
91 2fbh_A Transcriptional regulat 57.3 43 0.0015 27.0 8.1 28 364-391 50-77 (146)
92 3cjn_A Transcriptional regulat 56.8 30 0.001 28.8 7.1 26 366-391 66-91 (162)
93 3s2w_A Transcriptional regulat 55.9 47 0.0016 27.6 8.3 67 317-391 23-89 (159)
94 3f2g_A Alkylmercury lyase; MER 55.4 16 0.00055 34.2 5.6 34 357-391 28-61 (220)
95 2rdp_A Putative transcriptiona 54.8 43 0.0015 27.3 7.7 26 366-391 56-81 (150)
96 2d1h_A ST1889, 109AA long hypo 54.7 17 0.0006 27.9 5.0 28 364-391 34-61 (109)
97 2w48_A Sorbitol operon regulat 53.9 15 0.00052 35.2 5.3 28 365-392 20-47 (315)
98 4ev0_A Transcription regulator 53.7 49 0.0017 28.4 8.3 25 367-391 164-188 (216)
99 1y6u_A XIS, excisionase from t 53.5 9.8 0.00034 29.2 3.1 24 367-390 17-40 (70)
100 3e6m_A MARR family transcripti 53.4 35 0.0012 28.5 7.1 26 366-391 67-92 (161)
101 4hbl_A Transcriptional regulat 53.4 43 0.0015 27.6 7.5 27 365-391 54-80 (149)
102 1tc3_C Protein (TC3 transposas 53.3 35 0.0012 22.0 5.7 39 204-259 4-42 (51)
103 3mn2_A Probable ARAC family tr 53.0 26 0.0009 27.6 5.9 38 353-390 4-42 (108)
104 2pn6_A ST1022, 150AA long hypo 52.9 14 0.00049 31.0 4.5 33 358-391 10-42 (150)
105 2b0l_A GTP-sensing transcripti 52.9 10 0.00034 30.8 3.3 28 364-391 41-68 (102)
106 2pg4_A Uncharacterized protein 52.8 22 0.00075 27.5 5.2 38 354-391 18-56 (95)
107 2qww_A Transcriptional regulat 52.6 40 0.0014 27.7 7.2 26 366-391 55-80 (154)
108 1ku9_A Hypothetical protein MJ 52.5 27 0.00094 28.2 6.1 27 365-391 40-66 (152)
109 3tqn_A Transcriptional regulat 52.4 11 0.00036 30.9 3.4 27 365-391 32-58 (113)
110 2wus_R RODZ, putative uncharac 52.2 24 0.00083 29.0 5.6 20 367-386 21-40 (112)
111 2a6c_A Helix-turn-helix motif; 52.1 29 0.001 26.1 5.8 26 364-389 29-54 (83)
112 1on2_A Transcriptional regulat 51.8 22 0.00074 29.3 5.4 27 365-391 21-47 (142)
113 1lmb_3 Protein (lambda repress 51.7 20 0.00068 27.2 4.8 38 351-389 16-53 (92)
114 2dt5_A AT-rich DNA-binding pro 51.4 29 0.00099 31.8 6.6 50 341-390 2-52 (211)
115 3bj6_A Transcriptional regulat 51.4 41 0.0014 27.5 7.0 26 366-391 54-79 (152)
116 2ek5_A Predicted transcription 51.2 15 0.00053 30.9 4.3 28 364-391 26-53 (129)
117 3f8m_A GNTR-family protein tra 50.8 16 0.00056 33.9 4.8 40 351-390 21-60 (248)
118 2vt3_A REX, redox-sensing tran 50.8 31 0.0011 31.7 6.7 50 341-390 7-57 (215)
119 2a61_A Transcriptional regulat 50.6 40 0.0014 27.2 6.8 26 366-391 47-72 (145)
120 3hsr_A HTH-type transcriptiona 50.1 27 0.00093 28.5 5.7 26 366-391 50-75 (140)
121 1xmk_A Double-stranded RNA-spe 50.0 16 0.00056 28.7 4.0 32 359-391 19-51 (79)
122 3f6w_A XRE-family like protein 49.8 24 0.00081 26.2 4.9 23 366-388 27-49 (83)
123 3bja_A Transcriptional regulat 49.5 36 0.0012 27.2 6.3 26 366-391 47-72 (139)
124 3oio_A Transcriptional regulat 49.4 29 0.00098 27.7 5.6 39 352-390 8-47 (113)
125 1y7y_A C.AHDI; helix-turn-heli 49.3 33 0.0011 24.5 5.5 25 365-389 25-49 (74)
126 1jhf_A LEXA repressor; LEXA SO 49.2 32 0.0011 30.4 6.4 31 361-391 20-51 (202)
127 3knw_A Putative transcriptiona 49.0 79 0.0027 26.5 8.7 76 230-305 25-101 (212)
128 3s8q_A R-M controller protein; 49.0 26 0.00089 26.0 5.0 24 365-388 23-46 (82)
129 2ewt_A BLDD, putative DNA-bind 48.9 38 0.0013 24.1 5.7 25 365-389 20-46 (71)
130 2k9s_A Arabinose operon regula 48.9 31 0.001 27.2 5.6 38 352-389 4-43 (107)
131 1a04_A Nitrate/nitrite respons 48.8 14 0.00047 32.1 3.8 31 367-397 170-200 (215)
132 2fu4_A Ferric uptake regulatio 48.8 19 0.00066 27.1 4.2 27 365-391 32-63 (83)
133 3cdh_A Transcriptional regulat 48.5 41 0.0014 27.7 6.6 26 366-391 57-82 (155)
134 1s3j_A YUSO protein; structura 48.5 37 0.0013 27.9 6.3 26 366-391 51-76 (155)
135 3k0l_A Repressor protein; heli 48.4 43 0.0015 28.0 6.9 67 317-391 19-85 (162)
136 2vn2_A DNAD, chromosome replic 48.4 21 0.00073 29.8 4.8 26 366-391 51-76 (128)
137 4aik_A Transcriptional regulat 48.3 64 0.0022 27.1 7.9 34 358-391 38-71 (151)
138 2xi8_A Putative transcription 48.3 13 0.00044 26.1 2.9 25 365-389 13-37 (66)
139 2y75_A HTH-type transcriptiona 48.1 34 0.0012 28.1 6.0 28 364-391 24-51 (129)
140 1yio_A Response regulatory pro 48.1 21 0.00071 30.7 4.9 31 366-396 157-187 (208)
141 2b5a_A C.BCLI; helix-turn-heli 48.1 35 0.0012 24.6 5.5 24 365-388 22-45 (77)
142 3qq6_A HTH-type transcriptiona 47.8 29 0.00099 26.0 5.1 25 365-389 22-46 (78)
143 3by6_A Predicted transcription 47.3 14 0.00047 30.9 3.4 27 365-391 34-60 (126)
144 2bv6_A MGRA, HTH-type transcri 47.2 30 0.001 28.1 5.4 67 317-391 9-76 (142)
145 2l8n_A Transcriptional repress 47.0 8.9 0.00031 29.0 2.0 24 365-388 8-31 (67)
146 3oou_A LIN2118 protein; protei 46.8 33 0.0011 27.1 5.5 37 353-389 7-44 (108)
147 3keo_A Redox-sensing transcrip 46.6 26 0.00087 32.4 5.4 49 341-389 6-55 (212)
148 1r69_A Repressor protein CI; g 46.4 14 0.00048 26.2 2.9 25 365-389 13-37 (69)
149 2jt1_A PEFI protein; solution 46.1 22 0.00076 27.6 4.2 24 234-257 20-43 (77)
150 2kkm_A Translation machinery-a 46.1 45 0.0015 29.0 6.6 78 204-314 43-122 (144)
151 1zug_A Phage 434 CRO protein; 45.7 15 0.0005 26.2 2.9 25 365-389 15-39 (71)
152 2fmy_A COOA, carbon monoxide o 45.6 58 0.002 28.2 7.4 26 366-391 167-192 (220)
153 1z91_A Organic hydroperoxide r 45.3 35 0.0012 27.7 5.6 26 366-391 54-79 (147)
154 3kz9_A SMCR; transcriptional r 45.3 1.3E+02 0.0044 24.8 10.4 77 231-307 29-106 (206)
155 1j9i_A GPNU1 DBD;, terminase s 45.3 14 0.00048 27.3 2.8 24 367-390 3-26 (68)
156 3g5g_A Regulatory protein; tra 45.2 30 0.001 27.4 5.0 25 365-389 40-64 (99)
157 3dcf_A Transcriptional regulat 45.1 1.4E+02 0.0046 25.0 10.1 77 231-307 43-120 (218)
158 2wiu_B HTH-type transcriptiona 44.9 33 0.0011 25.6 5.0 25 365-389 24-48 (88)
159 3lsg_A Two-component response 44.8 45 0.0016 25.9 6.0 25 366-390 19-43 (103)
160 2gxg_A 146AA long hypothetical 44.8 75 0.0026 25.5 7.6 28 364-391 48-75 (146)
161 3rd3_A Probable transcriptiona 44.5 1.2E+02 0.0041 24.9 9.1 81 231-311 22-104 (197)
162 3c3w_A Two component transcrip 44.4 19 0.00067 31.8 4.1 31 367-397 165-195 (225)
163 3jsj_A Putative TETR-family tr 44.3 1.3E+02 0.0046 24.7 13.0 79 230-308 20-98 (190)
164 1v4r_A Transcriptional repress 44.2 7.6 0.00026 30.9 1.2 28 364-391 33-60 (102)
165 1mkm_A ICLR transcriptional re 44.1 37 0.0013 31.2 6.2 37 355-391 12-48 (249)
166 2ofy_A Putative XRE-family tra 44.1 40 0.0014 25.2 5.4 22 368-389 29-50 (86)
167 2kpj_A SOS-response transcript 44.1 44 0.0015 25.6 5.7 25 364-388 20-44 (94)
168 2elh_A CG11849-PA, LD40883P; s 44.1 18 0.00062 28.0 3.4 25 367-391 39-63 (87)
169 1sfx_A Conserved hypothetical 44.1 35 0.0012 26.1 5.1 26 366-391 34-59 (109)
170 2ef8_A C.ECOT38IS, putative tr 43.8 40 0.0014 24.7 5.3 24 365-388 22-45 (84)
171 3ppb_A Putative TETR family tr 43.4 1.3E+02 0.0046 24.5 10.5 76 231-306 21-97 (195)
172 2wv0_A YVOA, HTH-type transcri 43.1 25 0.00086 32.5 4.8 29 363-391 31-59 (243)
173 3b7h_A Prophage LP1 protein 11 42.9 35 0.0012 24.7 4.8 25 365-389 19-43 (78)
174 2hr3_A Probable transcriptiona 42.5 71 0.0024 25.8 7.1 27 365-391 49-75 (147)
175 3kp7_A Transcriptional regulat 42.4 38 0.0013 27.9 5.4 27 365-391 50-76 (151)
176 3dv8_A Transcriptional regulat 42.2 49 0.0017 28.5 6.3 26 366-391 169-194 (220)
177 3eus_A DNA-binding protein; st 42.1 39 0.0013 25.7 5.1 25 365-389 26-50 (86)
178 2xrn_A HTH-type transcriptiona 42.1 36 0.0012 31.3 5.7 37 355-391 10-46 (241)
179 2fbi_A Probable transcriptiona 41.9 36 0.0012 27.3 5.2 26 366-391 50-75 (142)
180 3qbm_A TETR transcriptional re 41.8 1.4E+02 0.0048 24.5 9.1 75 229-303 17-92 (199)
181 4ghj_A Probable transcriptiona 41.8 42 0.0014 27.1 5.4 25 364-388 47-71 (101)
182 1x57_A Endothelial differentia 41.8 46 0.0016 25.2 5.4 26 364-389 24-49 (91)
183 3bwg_A Uncharacterized HTH-typ 41.6 25 0.00086 32.3 4.5 28 363-390 26-53 (239)
184 2g7s_A Transcriptional regulat 41.4 38 0.0013 27.9 5.3 35 351-385 11-47 (194)
185 3edp_A LIN2111 protein; APC883 41.3 23 0.00077 32.7 4.2 27 364-390 31-57 (236)
186 3bs3_A Putative DNA-binding pr 41.3 22 0.00074 25.7 3.3 25 365-389 22-46 (76)
187 3ugo_A RNA polymerase sigma fa 41.0 5.7 0.0002 37.3 0.0 37 226-262 201-239 (245)
188 3hrs_A Metalloregulator SCAR; 40.8 28 0.00095 31.6 4.6 39 353-391 7-45 (214)
189 3omt_A Uncharacterized protein 40.2 18 0.00063 26.3 2.8 24 366-389 21-44 (73)
190 3eet_A Putative GNTR-family tr 40.1 28 0.00097 32.8 4.8 27 364-390 51-77 (272)
191 3mq0_A Transcriptional repress 40.0 33 0.0011 32.3 5.2 42 350-391 29-70 (275)
192 3e97_A Transcriptional regulat 39.9 43 0.0015 29.2 5.7 25 367-391 176-200 (231)
193 2cw1_A SN4M; lambda CRO fold, 39.8 24 0.00082 26.6 3.4 24 368-391 15-38 (65)
194 2r1j_L Repressor protein C2; p 39.8 18 0.00062 25.4 2.6 24 366-389 18-41 (68)
195 2qwt_A Transcriptional regulat 39.7 53 0.0018 27.8 6.1 35 351-385 16-51 (196)
196 1p2f_A Response regulator; DRR 39.6 23 0.00077 30.9 3.7 36 362-397 160-198 (220)
197 3bd1_A CRO protein; transcript 39.5 22 0.00076 26.4 3.2 23 368-390 13-35 (79)
198 2h09_A Transcriptional regulat 39.5 46 0.0016 27.8 5.6 27 365-391 53-79 (155)
199 3f1b_A TETR-like transcription 39.4 1.6E+02 0.0055 24.2 10.3 76 231-306 26-102 (203)
200 1y0u_A Arsenical resistance op 39.2 33 0.0011 26.6 4.3 26 366-391 43-68 (96)
201 3mky_B Protein SOPB; partition 38.9 43 0.0015 30.7 5.5 46 343-392 23-68 (189)
202 3t76_A VANU, transcriptional r 38.7 24 0.00081 27.8 3.3 25 365-389 36-60 (88)
203 2kfs_A Conserved hypothetical 38.7 19 0.00067 31.7 3.1 26 366-391 31-56 (148)
204 1rzs_A Antirepressor, regulato 38.5 20 0.00068 26.0 2.7 20 368-387 12-31 (61)
205 4a0z_A Transcription factor FA 38.1 60 0.002 29.2 6.4 31 357-388 18-48 (190)
206 1ufm_A COP9 complex subunit 4; 37.9 46 0.0016 26.2 4.9 32 359-390 23-54 (84)
207 2q24_A Putative TETR family tr 37.8 51 0.0017 27.7 5.6 35 351-385 18-53 (194)
208 3cuo_A Uncharacterized HTH-typ 37.6 28 0.00096 26.5 3.6 28 364-391 36-63 (99)
209 1sgm_A Putative HTH-type trans 37.5 1.5E+02 0.0052 24.1 8.5 77 230-306 17-95 (191)
210 3dkw_A DNR protein; CRP-FNR, H 37.2 94 0.0032 26.7 7.5 25 367-391 179-203 (227)
211 3h5t_A Transcriptional regulat 36.9 21 0.00073 33.9 3.3 27 363-389 6-32 (366)
212 3mkl_A HTH-type transcriptiona 36.9 54 0.0018 26.4 5.4 37 353-389 9-46 (120)
213 1adr_A P22 C2 repressor; trans 36.8 24 0.00083 25.4 3.0 24 366-389 18-41 (76)
214 2k9l_A RNA polymerase sigma fa 36.7 32 0.0011 26.4 3.7 38 354-391 35-73 (76)
215 3qkx_A Uncharacterized HTH-typ 36.6 1.7E+02 0.0058 23.7 10.2 77 229-305 18-95 (188)
216 2g7g_A RHA04620, putative tran 36.6 39 0.0013 29.7 4.9 32 353-385 17-48 (213)
217 1z4h_A TORI, TOR inhibition pr 36.5 28 0.00096 25.6 3.3 26 366-391 10-35 (66)
218 3tgn_A ADC operon repressor AD 36.5 37 0.0013 27.5 4.4 31 359-391 46-76 (146)
219 2k9q_A Uncharacterized protein 36.3 25 0.00084 25.9 3.0 23 366-388 15-37 (77)
220 1ft9_A Carbon monoxide oxidati 36.2 71 0.0024 27.8 6.5 25 367-391 164-188 (222)
221 1wrj_A Methylated-DNA--protein 35.8 29 0.00098 30.7 3.7 60 329-389 49-111 (156)
222 1pb6_A Hypothetical transcript 35.7 68 0.0023 26.9 6.1 46 341-386 11-58 (212)
223 2eth_A Transcriptional regulat 35.7 43 0.0015 27.7 4.8 26 366-391 58-83 (154)
224 2fq4_A Transcriptional regulat 35.6 68 0.0023 26.9 6.1 36 350-385 14-51 (192)
225 3b02_A Transcriptional regulat 35.6 69 0.0023 27.3 6.2 25 367-391 140-164 (195)
226 2g7h_A Methylated-DNA--protein 35.5 13 0.00043 33.6 1.3 60 329-389 55-119 (167)
227 2o38_A Hypothetical protein; a 35.5 37 0.0013 28.1 4.2 25 364-388 51-75 (120)
228 3bdd_A Regulatory protein MARR 35.4 1.2E+02 0.0041 24.1 7.4 26 366-391 45-70 (142)
229 1pdn_C Protein (PRD paired); p 35.2 28 0.00096 27.4 3.4 25 367-391 34-58 (128)
230 3he0_A Transcriptional regulat 35.0 1.9E+02 0.0064 23.7 8.8 69 230-298 22-91 (196)
231 3ppb_A Putative TETR family tr 34.7 65 0.0022 26.5 5.7 34 352-385 13-48 (195)
232 2gau_A Transcriptional regulat 34.6 99 0.0034 26.8 7.2 25 367-391 181-205 (232)
233 3qkx_A Uncharacterized HTH-typ 34.6 73 0.0025 26.1 6.0 36 350-385 10-47 (188)
234 2ao9_A Phage protein; structur 34.5 31 0.0011 30.6 3.7 28 361-388 43-70 (155)
235 1u78_A TC3 transposase, transp 34.5 61 0.0021 26.1 5.4 25 367-391 23-47 (141)
236 3kjx_A Transcriptional regulat 34.5 17 0.00059 34.2 2.2 26 364-389 8-33 (344)
237 1ub9_A Hypothetical protein PH 34.5 46 0.0016 25.2 4.4 26 366-391 30-55 (100)
238 3eup_A Transcriptional regulat 34.4 1E+02 0.0035 25.5 7.0 78 231-308 23-101 (204)
239 3ech_A MEXR, multidrug resista 34.2 91 0.0031 25.2 6.5 26 366-391 51-76 (142)
240 2jn6_A Protein CGL2762, transp 34.2 33 0.0011 26.6 3.6 25 367-391 24-48 (97)
241 2qtq_A Transcriptional regulat 34.2 2E+02 0.0068 23.8 10.7 78 231-308 28-107 (213)
242 3trb_A Virulence-associated pr 34.2 54 0.0019 26.3 4.9 25 364-388 25-49 (104)
243 3nxc_A HTH-type protein SLMA; 34.0 1.1E+02 0.0037 25.6 7.1 70 235-304 41-111 (212)
244 3jw4_A Transcriptional regulat 34.0 48 0.0016 27.1 4.7 27 365-391 56-82 (148)
245 2qvo_A Uncharacterized protein 33.9 94 0.0032 23.9 6.2 28 364-391 28-55 (95)
246 2zcm_A Biofilm operon icaabcd 33.7 53 0.0018 27.4 5.0 33 353-385 13-46 (192)
247 3b81_A Transcriptional regulat 33.7 68 0.0023 26.7 5.8 37 349-385 12-50 (203)
248 1hw1_A FADR, fatty acid metabo 33.6 28 0.00095 31.4 3.4 27 364-390 29-55 (239)
249 3u2r_A Regulatory protein MARR 33.6 83 0.0029 26.3 6.3 27 365-391 61-87 (168)
250 3jth_A Transcription activator 33.6 37 0.0012 26.2 3.7 27 365-391 35-61 (98)
251 3g3z_A NMB1585, transcriptiona 33.5 1.5E+02 0.0051 23.8 7.7 26 366-391 45-70 (145)
252 3kor_A Possible Trp repressor; 33.4 50 0.0017 28.1 4.7 22 367-388 76-97 (119)
253 3e6c_C CPRK, cyclic nucleotide 33.4 96 0.0033 27.5 7.0 25 367-391 178-202 (250)
254 3pas_A TETR family transcripti 33.3 1.3E+02 0.0044 24.5 7.4 76 231-306 20-96 (195)
255 3knw_A Putative transcriptiona 33.1 78 0.0027 26.5 6.1 35 351-385 17-53 (212)
256 1bl0_A Protein (multiple antib 33.0 55 0.0019 26.8 4.9 38 352-389 12-50 (129)
257 2di3_A Bacterial regulatory pr 32.9 47 0.0016 30.1 4.9 28 364-391 26-53 (239)
258 3f1b_A TETR-like transcription 32.9 77 0.0026 26.3 5.9 36 351-386 17-54 (203)
259 1neq_A DNA-binding protein NER 32.9 22 0.00075 27.1 2.2 25 364-388 20-44 (74)
260 2oz6_A Virulence factor regula 32.8 25 0.00086 30.1 2.8 25 367-391 165-189 (207)
261 2qq9_A Diphtheria toxin repres 32.7 84 0.0029 28.4 6.6 42 350-391 8-49 (226)
262 2v57_A TETR family transcripti 32.6 1.8E+02 0.006 23.9 8.2 69 237-309 31-99 (190)
263 3dn7_A Cyclic nucleotide bindi 32.6 21 0.00071 30.4 2.3 24 366-389 168-191 (194)
264 2v79_A DNA replication protein 32.6 43 0.0015 28.5 4.3 37 361-397 45-84 (135)
265 3col_A Putative transcription 32.5 1.9E+02 0.0066 23.5 8.4 78 231-308 22-102 (196)
266 3hug_A RNA polymerase sigma fa 32.5 1.6E+02 0.0056 22.3 9.1 33 239-271 54-86 (92)
267 3him_A Probable transcriptiona 32.5 1.5E+02 0.0053 24.4 7.9 76 230-305 27-103 (211)
268 2gwr_A DNA-binding response re 32.4 34 0.0012 30.3 3.7 36 362-397 168-208 (238)
269 3vk0_A NHTF, transcriptional r 32.4 60 0.0021 25.9 5.0 20 367-386 35-54 (114)
270 3b73_A PHIH1 repressor-like pr 32.3 41 0.0014 27.8 3.9 34 357-391 19-54 (111)
271 3bqz_B HTH-type transcriptiona 32.2 60 0.002 26.8 5.1 34 352-385 6-41 (194)
272 2hin_A GP39, repressor protein 32.2 34 0.0012 26.2 3.1 22 368-389 12-33 (71)
273 4fx0_A Probable transcriptiona 32.1 1.2E+02 0.0043 25.1 7.1 27 365-391 51-77 (148)
274 2oqr_A Sensory transduction pr 32.1 38 0.0013 29.5 4.0 36 362-397 171-211 (230)
275 1rr7_A Middle operon regulator 32.0 65 0.0022 27.3 5.3 27 366-392 92-118 (129)
276 2g7s_A Transcriptional regulat 32.0 1.9E+02 0.0066 23.4 8.3 80 230-309 19-99 (194)
277 3anp_C Transcriptional repress 32.0 81 0.0028 26.6 6.0 35 351-385 12-48 (204)
278 3fmy_A HTH-type transcriptiona 31.9 24 0.00083 26.1 2.3 24 366-389 24-47 (73)
279 2hku_A A putative transcriptio 31.8 68 0.0023 27.4 5.5 34 353-386 26-59 (215)
280 2r0q_C Putative transposon TN5 31.7 1.7E+02 0.0059 25.8 8.4 22 367-388 176-197 (209)
281 2fbk_A Transcriptional regulat 31.6 66 0.0023 27.5 5.4 25 367-391 87-111 (181)
282 3lhq_A Acrab operon repressor 31.6 84 0.0029 26.2 6.0 40 347-386 13-54 (220)
283 2ibd_A Possible transcriptiona 31.5 2.3E+02 0.0079 23.7 9.3 73 230-302 25-98 (204)
284 3dpj_A Transcription regulator 31.5 93 0.0032 25.8 6.2 36 351-386 11-48 (194)
285 2rek_A Putative TETR-family tr 31.5 56 0.0019 27.4 4.9 35 351-385 19-54 (199)
286 3dcf_A Transcriptional regulat 31.5 76 0.0026 26.7 5.7 35 351-385 34-70 (218)
287 3bni_A Putative TETR-family tr 31.4 2.5E+02 0.0086 24.1 9.7 78 231-308 55-135 (229)
288 3f3x_A Transcriptional regulat 31.3 94 0.0032 25.1 6.1 24 368-391 52-75 (144)
289 3f0c_A TETR-molecule A, transc 31.3 2.3E+02 0.0078 23.6 9.8 77 230-306 22-99 (216)
290 2v57_A TETR family transcripti 30.9 61 0.0021 26.8 4.9 34 351-385 17-51 (190)
291 3lwj_A Putative TETR-family tr 30.8 90 0.0031 26.0 6.0 37 349-385 13-51 (202)
292 3la7_A Global nitrogen regulat 30.8 1.3E+02 0.0045 26.6 7.5 25 367-391 194-218 (243)
293 2zcw_A TTHA1359, transcription 30.3 30 0.001 29.8 2.9 25 367-391 147-171 (202)
294 2ppx_A AGR_C_3184P, uncharacte 30.3 39 0.0013 26.3 3.3 24 365-388 42-65 (99)
295 2oqg_A Possible transcriptiona 30.3 52 0.0018 25.8 4.2 26 366-391 34-59 (114)
296 3kkc_A TETR family transcripti 30.2 59 0.002 26.6 4.7 36 350-385 14-51 (177)
297 3bni_A Putative TETR-family tr 30.0 95 0.0032 27.0 6.2 37 349-385 44-82 (229)
298 3q0w_A HTH-type transcriptiona 29.8 2.2E+02 0.0075 24.6 8.7 77 231-307 56-135 (236)
299 3mzy_A RNA polymerase sigma-H 29.7 1.4E+02 0.0047 24.2 6.9 36 237-272 123-158 (164)
300 2ict_A Antitoxin HIGA; helix-t 29.6 39 0.0013 25.8 3.2 24 366-389 21-44 (94)
301 1r1u_A CZRA, repressor protein 29.5 63 0.0022 25.4 4.6 26 366-391 39-64 (106)
302 2zb9_A Putative transcriptiona 29.5 76 0.0026 26.9 5.4 49 338-386 14-63 (214)
303 3ryp_A Catabolite gene activat 29.4 31 0.0011 29.6 2.8 25 367-391 168-192 (210)
304 2nyx_A Probable transcriptiona 29.3 1.9E+02 0.0065 24.1 7.9 26 366-391 59-84 (168)
305 3mn2_A Probable ARAC family tr 29.2 72 0.0025 25.0 4.8 35 227-261 7-41 (108)
306 2o8x_A Probable RNA polymerase 29.0 1.1E+02 0.0039 21.5 5.6 26 240-265 33-58 (70)
307 2f07_A YVDT; helix-turn-helix, 29.0 64 0.0022 27.3 4.8 36 351-386 13-50 (197)
308 2fxa_A Protease production reg 28.9 1.6E+02 0.0054 26.1 7.6 26 366-391 62-87 (207)
309 3qbm_A TETR transcriptional re 28.9 85 0.0029 25.9 5.5 35 351-385 10-46 (199)
310 2kko_A Possible transcriptiona 28.8 59 0.002 25.9 4.3 27 365-391 37-63 (108)
311 3t8r_A Staphylococcus aureus C 28.8 37 0.0013 28.9 3.2 27 365-391 27-53 (143)
312 3bqz_B HTH-type transcriptiona 28.7 2.4E+02 0.0081 23.0 9.2 66 229-294 12-78 (194)
313 3g1o_A Transcriptional regulat 28.5 2E+02 0.0068 25.2 8.3 74 234-307 58-134 (255)
314 3mnl_A KSTR, transcriptional r 28.5 1.2E+02 0.0041 25.1 6.4 77 231-307 32-109 (203)
315 3mlf_A Transcriptional regulat 28.4 44 0.0015 26.9 3.5 25 365-389 35-59 (111)
316 3kz9_A SMCR; transcriptional r 28.4 1.3E+02 0.0044 24.8 6.6 37 349-385 18-56 (206)
317 1ylf_A RRF2 family protein; st 28.4 45 0.0015 28.3 3.7 28 364-391 28-55 (149)
318 1u8b_A ADA polyprotein; protei 28.3 61 0.0021 26.5 4.4 39 351-390 79-117 (133)
319 2lkp_A Transcriptional regulat 28.2 84 0.0029 25.0 5.2 26 366-391 45-70 (119)
320 1k78_A Paired box protein PAX5 28.2 41 0.0014 28.0 3.4 25 367-391 49-73 (149)
321 2eh3_A Transcriptional regulat 28.2 95 0.0032 25.6 5.7 34 352-385 6-41 (179)
322 2ibd_A Possible transcriptiona 28.0 1E+02 0.0034 26.1 5.9 36 350-385 16-53 (204)
323 2dk5_A DNA-directed RNA polyme 27.9 88 0.003 24.8 5.1 27 365-391 35-61 (91)
324 1bia_A BIRA bifunctional prote 27.8 61 0.0021 31.2 4.9 29 363-391 16-44 (321)
325 3vpr_A Transcriptional regulat 27.8 96 0.0033 25.8 5.7 32 354-385 10-42 (190)
326 2iu5_A DHAS, YCEG, HTH-type dh 27.7 41 0.0014 28.4 3.3 34 351-384 16-51 (195)
327 3fx3_A Cyclic nucleotide-bindi 27.7 36 0.0012 29.9 3.1 25 367-391 179-203 (237)
328 2g7u_A Transcriptional regulat 27.7 43 0.0015 31.0 3.7 40 352-391 12-54 (257)
329 3bhq_A Transcriptional regulat 27.6 1.1E+02 0.0036 26.1 6.0 35 351-385 15-51 (211)
330 3he0_A Transcriptional regulat 27.6 76 0.0026 26.2 5.0 33 353-385 17-50 (196)
331 3kcc_A Catabolite gene activat 27.5 1.2E+02 0.0041 27.3 6.7 25 367-391 218-242 (260)
332 1kgs_A DRRD, DNA binding respo 27.5 41 0.0014 29.1 3.3 35 362-396 166-205 (225)
333 3ivp_A Putative transposon-rel 27.4 81 0.0028 25.4 5.0 25 365-389 24-48 (126)
334 3jsj_A Putative TETR-family tr 27.3 95 0.0032 25.7 5.5 33 353-385 15-47 (190)
335 1b0n_A Protein (SINR protein); 27.2 47 0.0016 25.9 3.3 25 365-389 13-37 (111)
336 3op9_A PLI0006 protein; struct 27.2 37 0.0013 26.9 2.8 24 366-389 22-45 (114)
337 3vp5_A Transcriptional regulat 27.2 98 0.0034 26.0 5.7 40 347-386 11-52 (189)
338 2pij_A Prophage PFL 6 CRO; tra 27.1 48 0.0017 23.5 3.1 23 368-390 15-37 (67)
339 2zkz_A Transcriptional repress 27.1 53 0.0018 25.7 3.7 28 366-393 41-68 (99)
340 2ras_A Transcriptional regulat 27.0 91 0.0031 26.3 5.4 35 351-385 14-50 (212)
341 3vib_A MTRR; helix-turn-helix 27.0 1.1E+02 0.0038 25.9 6.0 40 347-386 9-50 (210)
342 3qwg_A ESX-1 secretion-associa 26.9 41 0.0014 28.1 3.1 29 355-383 44-76 (123)
343 3oio_A Transcriptional regulat 26.9 63 0.0022 25.6 4.1 32 230-261 15-46 (113)
344 2glo_A Brinker CG9653-PA; prot 26.8 48 0.0017 23.5 3.1 22 369-390 28-49 (59)
345 3iwz_A CAP-like, catabolite ac 26.8 36 0.0012 29.6 2.8 25 367-391 188-212 (230)
346 1uly_A Hypothetical protein PH 26.7 67 0.0023 28.7 4.7 26 366-391 33-58 (192)
347 3p7n_A Sensor histidine kinase 26.7 38 0.0013 30.0 3.0 31 367-397 214-244 (258)
348 3d0s_A Transcriptional regulat 26.6 38 0.0013 29.5 3.0 25 367-391 178-202 (227)
349 3bru_A Regulatory protein, TET 26.6 1E+02 0.0035 26.0 5.7 36 350-385 32-69 (222)
350 3rd3_A Probable transcriptiona 26.5 71 0.0024 26.3 4.6 34 351-384 13-48 (197)
351 3gzi_A Transcriptional regulat 26.5 1E+02 0.0035 26.0 5.7 49 338-386 7-57 (218)
352 1rkt_A Protein YFIR; transcrip 26.5 94 0.0032 26.3 5.5 35 351-385 15-51 (205)
353 3anp_C Transcriptional repress 26.2 2.8E+02 0.0097 23.0 9.2 56 227-282 17-73 (204)
354 3f52_A CLP gene regulator (CLG 26.2 66 0.0022 25.5 4.1 22 367-388 42-63 (117)
355 3oou_A LIN2118 protein; protei 26.2 88 0.003 24.5 4.9 35 227-261 10-44 (108)
356 2gen_A Probable transcriptiona 26.2 2.8E+02 0.0097 23.1 8.8 54 228-281 16-70 (197)
357 3s5r_A Transcriptional regulat 26.0 2.8E+02 0.0097 23.0 10.1 78 230-307 21-100 (216)
358 2jml_A DNA binding domain/tran 26.0 42 0.0014 25.6 2.7 23 367-389 6-28 (81)
359 1u2w_A CADC repressor, cadmium 26.0 90 0.0031 25.3 5.0 27 365-391 55-81 (122)
360 3col_A Putative transcription 25.7 53 0.0018 27.0 3.6 35 351-385 13-49 (196)
361 1zyb_A Transcription regulator 25.7 38 0.0013 29.9 2.8 25 367-391 187-211 (232)
362 3k2z_A LEXA repressor; winged 25.7 1.3E+02 0.0043 26.5 6.3 27 233-259 19-45 (196)
363 2l49_A C protein; P2 bacteriop 25.6 50 0.0017 25.2 3.2 24 365-388 16-39 (99)
364 3lsg_A Two-component response 25.6 92 0.0032 24.1 4.8 33 229-261 9-42 (103)
365 2qwt_A Transcriptional regulat 25.6 2.2E+02 0.0074 23.8 7.6 51 229-279 23-73 (196)
366 3lwf_A LIN1550 protein, putati 25.6 47 0.0016 29.0 3.3 28 364-391 42-69 (159)
367 3pas_A TETR family transcripti 25.4 56 0.0019 26.9 3.7 35 351-385 11-47 (195)
368 1r71_A Transcriptional repress 25.4 76 0.0026 28.4 4.7 26 366-391 52-77 (178)
369 1y9q_A Transcriptional regulat 25.4 86 0.0029 27.1 5.0 24 365-388 23-46 (192)
370 2nx4_A Transcriptional regulat 25.4 1.3E+02 0.0043 25.3 6.1 40 347-386 9-50 (194)
371 2qtq_A Transcriptional regulat 25.3 1.1E+02 0.0039 25.4 5.7 36 351-386 19-56 (213)
372 3cwr_A Transcriptional regulat 25.2 1.1E+02 0.0038 25.3 5.6 38 349-386 18-57 (208)
373 3cdl_A Transcriptional regulat 25.1 1.1E+02 0.0038 25.8 5.7 42 342-383 4-46 (203)
374 3dew_A Transcriptional regulat 25.0 89 0.003 25.8 4.9 38 349-386 10-48 (206)
375 2rn7_A IS629 ORFA; helix, all 25.0 48 0.0016 26.2 3.0 25 367-391 31-55 (108)
376 3crj_A Transcription regulator 24.9 1.1E+02 0.0039 25.8 5.7 36 350-385 16-53 (199)
377 2eby_A Putative HTH-type trans 24.9 56 0.0019 25.8 3.5 24 365-388 23-46 (113)
378 2fjr_A Repressor protein CI; g 24.9 72 0.0025 27.4 4.4 22 368-389 22-43 (189)
379 3c7j_A Transcriptional regulat 24.9 50 0.0017 30.2 3.5 28 364-391 47-74 (237)
380 2xvc_A ESCRT-III, SSO0910; cel 24.8 92 0.0031 23.4 4.2 33 359-391 18-50 (59)
381 2jvl_A TRMBF1; coactivator, he 24.8 1.1E+02 0.0036 24.3 5.1 25 364-388 47-71 (107)
382 3s5r_A Transcriptional regulat 24.8 95 0.0032 26.1 5.1 36 351-386 13-50 (216)
383 3boq_A Transcriptional regulat 24.6 80 0.0027 26.0 4.5 28 364-391 60-87 (160)
384 1eto_A FIS, factor for inversi 24.6 2.7E+02 0.0092 22.2 8.6 23 368-390 73-95 (98)
385 2f07_A YVDT; helix-turn-helix, 24.6 3.1E+02 0.01 22.9 9.0 66 230-295 21-87 (197)
386 3mvp_A TETR/ACRR transcription 24.6 1.1E+02 0.0039 25.5 5.6 49 338-386 17-66 (217)
387 3ccy_A Putative TETR-family tr 24.6 2.8E+02 0.0095 23.1 8.1 67 230-296 25-92 (203)
388 2hku_A A putative transcriptio 24.5 3E+02 0.01 23.1 8.4 49 231-279 32-80 (215)
389 3on4_A Transcriptional regulat 24.5 2.8E+02 0.0096 22.4 8.9 65 231-295 22-88 (191)
390 1vi0_A Transcriptional regulat 24.4 3.2E+02 0.011 23.0 9.5 66 230-295 19-85 (206)
391 3fym_A Putative uncharacterize 24.4 71 0.0024 26.5 4.1 17 369-385 54-70 (130)
392 2hs5_A Putative transcriptiona 24.4 69 0.0024 29.2 4.4 28 364-391 49-76 (239)
393 2d6y_A Putative TETR family re 24.1 1.2E+02 0.0041 25.7 5.7 34 353-386 14-48 (202)
394 3kxa_A NGO0477 protein, putati 24.1 59 0.002 27.5 3.6 25 365-389 80-104 (141)
395 2o7t_A Transcriptional regulat 24.0 90 0.0031 26.2 4.8 35 351-385 11-47 (199)
396 3r1f_A ESX-1 secretion-associa 24.0 49 0.0017 28.0 3.0 15 369-383 64-78 (135)
397 3rh2_A Hypothetical TETR-like 24.0 2.9E+02 0.01 23.0 8.2 77 230-307 14-91 (212)
398 3aqt_A Bacterial regulatory pr 24.0 2.1E+02 0.0073 25.0 7.5 67 231-297 58-125 (245)
399 2k9s_A Arabinose operon regula 23.9 92 0.0032 24.3 4.5 34 228-261 9-43 (107)
400 2qko_A Possible transcriptiona 23.9 67 0.0023 27.4 4.0 35 351-385 31-67 (215)
401 3nxc_A HTH-type protein SLMA; 23.8 66 0.0023 27.0 3.9 35 351-385 27-64 (212)
402 2rae_A Transcriptional regulat 23.8 1.3E+02 0.0044 25.2 5.8 34 353-386 23-57 (207)
403 3q0w_A HTH-type transcriptiona 23.7 1.2E+02 0.004 26.5 5.6 35 351-385 47-83 (236)
404 1sgm_A Putative HTH-type trans 23.7 54 0.0018 27.0 3.2 34 352-385 10-45 (191)
405 1fx7_A Iron-dependent represso 23.7 1.1E+02 0.0036 27.7 5.5 40 352-391 10-49 (230)
406 3sxy_A Transcriptional regulat 23.6 50 0.0017 29.4 3.2 28 364-391 33-60 (218)
407 3ihu_A Transcriptional regulat 23.6 70 0.0024 28.5 4.2 28 364-391 37-64 (222)
408 3f0c_A TETR-molecule A, transc 23.5 1.2E+02 0.0042 25.4 5.6 33 353-385 17-50 (216)
409 3on4_A Transcriptional regulat 23.5 1E+02 0.0034 25.3 4.9 35 351-385 13-49 (191)
410 1xd7_A YWNA; structural genomi 23.4 81 0.0028 26.5 4.4 24 368-391 25-48 (145)
411 2xdn_A HTH-type transcriptiona 23.4 99 0.0034 26.2 5.0 40 347-386 10-51 (210)
412 2ia2_A Putative transcriptiona 23.4 49 0.0017 30.8 3.2 41 351-391 18-61 (265)
413 2wui_A MEXZ, transcriptional r 23.4 1.2E+02 0.0039 25.9 5.5 35 351-385 14-50 (210)
414 1rkt_A Protein YFIR; transcrip 23.4 3.2E+02 0.011 22.7 8.5 69 227-295 20-89 (205)
415 3bhq_A Transcriptional regulat 23.3 3.3E+02 0.011 22.8 9.3 53 229-281 22-75 (211)
416 2bnm_A Epoxidase; oxidoreducta 23.3 96 0.0033 26.8 5.0 25 365-389 22-46 (198)
417 2dg7_A Putative transcriptiona 23.1 1.1E+02 0.0038 25.4 5.2 34 353-386 13-47 (195)
418 3nrg_A TETR family transcripti 23.1 3.1E+02 0.011 22.7 8.2 74 230-303 24-99 (217)
419 3egq_A TETR family transcripti 23.1 75 0.0026 25.9 4.0 37 350-386 6-44 (170)
420 2lfc_A Fumarate reductase, fla 23.0 57 0.002 28.1 3.3 24 367-390 96-119 (160)
421 2o0y_A Transcriptional regulat 22.9 45 0.0015 31.0 2.8 41 351-391 20-63 (260)
422 3ni7_A Bacterial regulatory pr 22.9 3.1E+02 0.011 23.7 8.3 78 229-306 17-95 (213)
423 2l1p_A DNA-binding protein SAT 22.9 1.1E+02 0.0039 24.4 4.7 24 366-389 32-55 (83)
424 2gen_A Probable transcriptiona 22.9 1.3E+02 0.0043 25.4 5.6 33 353-385 13-46 (197)
425 2oi8_A Putative regulatory pro 22.6 1.5E+02 0.0052 25.7 6.2 37 349-385 17-55 (216)
426 3cec_A Putative antidote prote 22.5 49 0.0017 25.8 2.6 24 366-389 31-54 (104)
427 3pqk_A Biofilm growth-associat 22.4 85 0.0029 24.3 4.0 26 366-391 36-61 (102)
428 2zcx_A SCO7815, TETR-family tr 22.4 1.4E+02 0.0049 26.2 6.0 46 341-386 16-63 (231)
429 1s7o_A Hypothetical UPF0122 pr 22.1 2.9E+02 0.0099 22.3 7.4 31 240-270 40-70 (113)
430 3c2b_A Transcriptional regulat 22.1 1.1E+02 0.0037 26.0 4.9 36 351-386 18-55 (221)
431 3lfp_A CSP231I C protein; tran 22.0 67 0.0023 24.7 3.3 24 366-389 14-41 (98)
432 3e3m_A Transcriptional regulat 22.0 19 0.00065 34.1 0.0 27 363-389 9-35 (355)
433 3bru_A Regulatory protein, TET 21.9 3.5E+02 0.012 22.5 11.4 79 232-310 43-123 (222)
434 3g7r_A Putative transcriptiona 21.7 1.5E+02 0.0051 25.5 5.9 39 348-386 35-75 (221)
435 1mgt_A MGMT, protein (O6-methy 21.5 84 0.0029 28.2 4.2 41 348-389 91-132 (174)
436 3ni7_A Bacterial regulatory pr 21.4 1.4E+02 0.0049 25.9 5.8 36 351-386 10-47 (213)
437 1ys7_A Transcriptional regulat 21.3 38 0.0013 29.5 1.8 35 362-396 174-213 (233)
438 1t33_A Putative transcriptiona 21.3 1.1E+02 0.0038 25.9 4.9 36 351-386 15-51 (224)
439 3rkx_A Biotin-[acetyl-COA-carb 21.3 94 0.0032 30.1 4.8 29 363-391 16-44 (323)
440 2o03_A Probable zinc uptake re 21.1 1.3E+02 0.0046 24.7 5.2 32 360-391 20-56 (131)
441 2q24_A Putative TETR family tr 21.1 2.7E+02 0.0092 23.0 7.3 50 230-279 26-75 (194)
442 2e19_A Transcription factor 8; 21.0 88 0.003 23.0 3.6 21 368-388 32-52 (64)
443 2auw_A Hypothetical protein NE 20.9 1.1E+02 0.0037 27.4 4.8 26 364-389 101-126 (170)
444 2of7_A Putative TETR-family tr 20.9 1.5E+02 0.0053 26.3 6.0 37 350-386 50-88 (260)
445 2fd5_A Transcriptional regulat 20.9 94 0.0032 25.5 4.2 42 342-383 1-44 (180)
446 1r8d_A Transcription activator 20.8 68 0.0023 25.8 3.2 23 367-389 3-25 (109)
447 1nd9_A Translation initiation 20.8 55 0.0019 22.1 2.3 23 368-390 4-26 (49)
448 1xsv_A Hypothetical UPF0122 pr 20.8 2.8E+02 0.0096 22.3 7.0 31 240-270 43-73 (113)
449 3r4k_A Transcriptional regulat 20.7 43 0.0015 31.1 2.2 39 353-391 5-46 (260)
450 2hyt_A TETR-family transcripti 20.6 1.2E+02 0.0042 25.4 5.0 40 347-386 11-52 (197)
451 1vz0_A PARB, chromosome partit 20.6 1.3E+02 0.0045 27.6 5.5 24 367-390 135-158 (230)
452 1ui5_A A-factor receptor homol 20.6 1.4E+02 0.0046 25.7 5.4 39 348-386 9-49 (215)
453 1vi0_A Transcriptional regulat 20.6 1.1E+02 0.0038 26.0 4.7 35 351-385 11-47 (206)
454 3f6o_A Probable transcriptiona 20.4 95 0.0032 24.9 4.0 27 365-391 30-56 (118)
455 2ras_A Transcriptional regulat 20.4 3E+02 0.01 22.9 7.5 74 230-303 22-96 (212)
456 3k69_A Putative transcription 20.4 55 0.0019 28.5 2.7 28 364-391 26-53 (162)
457 2k9m_A RNA polymerase sigma fa 20.4 70 0.0024 27.2 3.3 35 357-391 29-64 (130)
458 3dpj_A Transcription regulator 20.3 3.5E+02 0.012 22.0 11.4 75 230-304 19-94 (194)
459 3geu_A Intercellular adhesion 20.3 71 0.0024 26.4 3.3 33 352-384 7-41 (189)
460 2id3_A Putative transcriptiona 20.2 1.3E+02 0.0043 26.0 5.1 37 350-386 42-80 (225)
461 2ra5_A Putative transcriptiona 20.2 22 0.00074 33.0 0.0 31 360-390 34-64 (247)
462 2wte_A CSA3; antiviral protein 20.1 1.2E+02 0.0041 28.2 5.1 26 366-391 166-191 (244)
463 3rh2_A Hypothetical TETR-like 20.0 1.2E+02 0.0042 25.5 4.9 34 352-385 7-42 (212)
464 3o9x_A Uncharacterized HTH-typ 20.0 54 0.0018 26.8 2.4 24 366-389 84-107 (133)
No 1
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=8.2e-35 Score=279.54 Aligned_cols=207 Identities=31% Similarity=0.510 Sum_probs=130.5
Q ss_pred hhhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcchhHHHHH---HHh-----------------------hCCCCchHH
Q 014852 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL---KER-----------------------LGCEPSMEQ 243 (417)
Q Consensus 190 ~~~~~~yl~~i~~~~lLt~~eE~eLirk~k~Gd~l~~~~~~l---~~~-----------------------lg~eps~~e 243 (417)
.|.+++||++|+++|+||+++|++|.++|+.|..+.+....- ... .+.+|+..+
T Consensus 6 ~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~ 85 (245)
T 3ugo_A 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 85 (245)
T ss_dssp CHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHH
T ss_pred CCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHH
Confidence 489999999999999999999999999999997633222110 000 146888999
Q ss_pred HHHHhcCCh----HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhh
Q 014852 244 LAASLRISR----PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 319 (417)
Q Consensus 244 ~A~~~~~s~----~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsT 319 (417)
||.+.+++. .+|...+.++..|++.||+.|.++|+++|++|.+++.+++||+||||||||+++++||+.+|++|+|
T Consensus 86 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~t 165 (245)
T 3ugo_A 86 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 165 (245)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHH
T ss_pred HHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHH
Confidence 999988865 3455667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHcC--CCHHHHHHHHHHhCccccc
Q 014852 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 320 YA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~-e~gRepS~eEIAe~LG--IS~etVr~aL~rark~LSL 396 (417)
|++||||+.+.++++++.+.+++|.++.+...++..+...|. .+++.||++|||+.|| ||+++|++++.++++.+||
T Consensus 166 ya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~lsl 245 (245)
T 3ugo_A 166 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 245 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999988885 5789999999999999 9999999999999999886
No 2
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=2.7e-32 Score=281.69 Aligned_cols=213 Identities=31% Similarity=0.507 Sum_probs=187.8
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcchhHHH------------------HHHHhhCCCCchHHHHH------
Q 014852 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL------------------RLKERLGCEPSMEQLAA------ 246 (417)
Q Consensus 191 ~~~~~yl~~i~~~~lLt~~eE~eLirk~k~Gd~l~~~~~------------------~l~~~lg~eps~~e~A~------ 246 (417)
|.++.||++|+..|+||++||++|+++++.|..+.+... .....+++.|+.++|+.
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 678899999999999999999999999999975433221 11223567788777632
Q ss_pred ------HhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhH
Q 014852 247 ------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (417)
Q Consensus 247 ------~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTY 320 (417)
.++++..+|...+.++..|++.||.+|+++|+++|++|.+++.+++|||||||||||+|+++||+.+|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 23566788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHcC--CCHHHHHHHHHHhCcccccc
Q 014852 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 321 A~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~-e~gRepS~eEIAe~LG--IS~etVr~aL~rark~LSLD 397 (417)
|+||||+.|.++++++.+.+++|.++.+.+++++++...|. .+||.|+.+|||+.|| ++.++|..++..+...+|||
T Consensus 254 A~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd 333 (438)
T 1l9z_H 254 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 333 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999988884 6899999999999999 99999999998888899999
Q ss_pred cccCCC
Q 014852 398 REAFPS 403 (417)
Q Consensus 398 ~~~~~s 403 (417)
.++..+
T Consensus 334 ~~~~~d 339 (438)
T 1l9z_H 334 TPIGDE 339 (438)
T ss_pred cccccc
Confidence 877543
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=7e-32 Score=277.43 Aligned_cols=210 Identities=32% Similarity=0.548 Sum_probs=185.2
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcchhHHHHHHHh---------------------hCCCCchHH------
Q 014852 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER---------------------LGCEPSMEQ------ 243 (417)
Q Consensus 191 ~~~~~yl~~i~~~~lLt~~eE~eLirk~k~Gd~l~~~~~~l~~~---------------------lg~eps~~e------ 243 (417)
+.+++||++|+..|+||++||.+|+++++.|+.+.+ .|.+. +++.|+.++
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 789999999999999999999999999999865332 23322 334555332
Q ss_pred ---HH---HHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCch
Q 014852 244 ---LA---ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKI 317 (417)
Q Consensus 244 ---~A---~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rF 317 (417)
|+ .+++.+..+|...+..+..|++.||.+|+++|+++|++|.+++.+++||+||||||||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 22 234667888888898899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHcC--CCHHHHHHHHHHhCccc
Q 014852 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVF 394 (417)
Q Consensus 318 sTYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~-e~gRepS~eEIAe~LG--IS~etVr~aL~rark~L 394 (417)
+|||+||||+.|.++++++.+.+++|.++.+.+++++++...|. ..||.|+.+|||+.|| +++++|..++..+...+
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999988884 6899999999999999 99999999999998999
Q ss_pred ccccccCCC
Q 014852 395 SLDREAFPS 403 (417)
Q Consensus 395 SLD~~~~~s 403 (417)
|||.+...+
T Consensus 316 Sld~~~~~~ 324 (423)
T 2a6h_F 316 SLETPIGDE 324 (423)
T ss_dssp ESSCBCSSS
T ss_pred ccccccCCC
Confidence 999887543
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.89 E-value=3.9e-25 Score=236.51 Aligned_cols=141 Identities=33% Similarity=0.675 Sum_probs=133.0
Q ss_pred HHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccccccCc
Q 014852 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPN 344 (417)
Q Consensus 265 Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~irlp~ 344 (417)
|++.||.+|.++|+++|++|++++.+++||+||||||||+++++|++.+|++|+||++|||||.|.++++++.+.+++|.
T Consensus 375 A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~ 454 (613)
T 3iyd_F 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 (613)
T ss_dssp HHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHcCCCHHHHHHHHHHhCcccccccccCCCCC
Q 014852 345 HLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLN 405 (417)
Q Consensus 345 ~~~e~~~kI~~a~~~L-~e~gRepS~eEIAe~LGIS~etVr~aL~rark~LSLD~~~~~s~~ 405 (417)
++.+..+++.++...| .+.||+||.+|||+.||+++++|+.++..++..+||+.+...+.+
T Consensus 455 ~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~ 516 (613)
T 3iyd_F 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 (613)
T ss_dssp HHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCC
Confidence 9999999999988888 468999999999999999999999999999999999988765433
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.78 E-value=7.5e-20 Score=168.08 Aligned_cols=160 Identities=33% Similarity=0.450 Sum_probs=49.1
Q ss_pred hcccCCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 014852 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (417)
Q Consensus 200 i~~~~lLt~~eE~eLirk~k~Gd~l~~~~~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~s 279 (417)
+...+.++++++.+|+.+++.||. .|++.|+..|.++|++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~gd~----------------------------------------~a~~~l~~~~~~~v~~ 43 (243)
T 1l0o_C 4 MQGQSPIKDQEMKELIRRSQEGDQ----------------------------------------EARDEIIEKNMRLVWS 43 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHcCCH----------------------------------------HHHHHHHHHhHHHHHH
Confidence 445667888888999999999987 8999999999999999
Q ss_pred HHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHH
Q 014852 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359 (417)
Q Consensus 280 IA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~ 359 (417)
+|.+|+++..+++||+||||+++|+++++|++.+|.+|.||+++++++.+.+++++.. .+++|..+.....++..+...
T Consensus 44 ~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T 1l0o_C 44 VVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDE 122 (243)
T ss_dssp --------------------------------------------------------CC-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999999998889999999999999999999877 678899988888899999888
Q ss_pred HH-HcCCCccHHHHHHHcCCCHHHHHHHHHHhCccccccccc
Q 014852 360 LE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREA 400 (417)
Q Consensus 360 L~-e~gRepS~eEIAe~LGIS~etVr~aL~rark~LSLD~~~ 400 (417)
+. ..++.++..++++.+|++.+.+...+.......|++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 164 (243)
T 1l0o_C 123 LSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETV 164 (243)
T ss_dssp HHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC--------
T ss_pred HHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccc
Confidence 85 468899999999999999999998888777777887664
No 6
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.74 E-value=1e-17 Score=150.28 Aligned_cols=128 Identities=22% Similarity=0.238 Sum_probs=104.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhcccccc-
Q 014852 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRL- 342 (417)
Q Consensus 264 ~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~irl- 342 (417)
.|++.|+..|.+.|+.+|.++++ ..+++|++||+|+++|+++++|++.. .|.+|++++++|.+.+++++..+....
T Consensus 23 ~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~~R~~~~~~~~~ 99 (194)
T 1or7_A 23 KAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNYLVAQGRRPPSS 99 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHHHHHHTTCCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 89999999999999999999999 99999999999999999999999875 699999999999999999876543210
Q ss_pred ---------------------Ccc---HHHHHHHHHHHHHHHHHcC---------CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 343 ---------------------PNH---LHERLGLIRNAKLRLEEKG---------VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 343 ---------------------p~~---~~e~~~kI~~a~~~L~e~g---------RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
|.. ..+....+..++..|++.. ...|++|||+.||||+++|++.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 100 DVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 000 1123344567777775433 3359999999999999999999999
Q ss_pred hCccc
Q 014852 390 IGKVF 394 (417)
Q Consensus 390 ark~L 394 (417)
+++.+
T Consensus 180 a~~~L 184 (194)
T 1or7_A 180 AREAI 184 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
No 7
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.72 E-value=9.4e-17 Score=147.63 Aligned_cols=135 Identities=21% Similarity=0.366 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHcc---CCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhcc
Q 014852 262 CSLAREKLVMSNVRLVMSIAQRYD---NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 338 (417)
Q Consensus 262 ~~~Are~LIe~yl~LV~sIA~Ry~---~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r 338 (417)
+..|++.|+..|.++|+++|.+|+ +++.+++||+||||++||+++++|++.+|.+|.||+++|+++.+.+++++..
T Consensus 10 ~~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~- 88 (239)
T 1rp3_A 10 NQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 346899999999999999999998 6789999999999999999999999999889999999999999999998865
Q ss_pred ccccCccHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHcCCCHHHHHHHHHHhC--cccccccc
Q 014852 339 TLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLDRE 399 (417)
Q Consensus 339 ~irlp~~~~e~~~kI~~a~~~L~-e~gRepS~eEIAe~LGIS~etVr~aL~rar--k~LSLD~~ 399 (417)
+.|.........+.++...+. ..++.|+..|||+.+|++++++..++.... ..+|+|.+
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~ 150 (239)
T 1rp3_A 89 --FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEV 150 (239)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCcccccc
Confidence 456667777788888888885 579999999999999999999998876553 34556544
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.71 E-value=1e-18 Score=155.81 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=106.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccccccC
Q 014852 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (417)
Q Consensus 264 ~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~irlp 343 (417)
.|++.|+..|.+.|+.+|.+++++..+++|++||+|+++|+++++|++..| .|.+|++++++|.+++++++..+....+
T Consensus 27 ~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~~d~~R~~~~~~~~~ 105 (184)
T 2q1z_A 27 AAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRRIDGLRKDRQPEPED 105 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSCCTTTCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 899999999999999999999999899999999999999999999999876 8999999999999999988765432221
Q ss_pred c-----------c---HHHHHHHHHHHHHHHHHcCCC---------ccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 344 N-----------H---LHERLGLIRNAKLRLEEKGVT---------PSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 344 ~-----------~---~~e~~~kI~~a~~~L~e~gRe---------pS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
. . ..+....+..++..|++..|. .|++|||+.||||+.+|++.++++++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 106 LFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 0 112234466666666443333 4999999999999999999999998654
No 9
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.69 E-value=5.9e-17 Score=160.96 Aligned_cols=74 Identities=43% Similarity=0.910 Sum_probs=71.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhc
Q 014852 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (417)
Q Consensus 264 ~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~ 337 (417)
.|++.||..|.++|+++|++|++++.+++||+|||||+||+++++|++.+|.+|+||++|||+|.|+++++++.
T Consensus 265 ~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr~~~ 338 (339)
T 1sig_A 265 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 338 (339)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999999889999999999999999999865
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.52 E-value=1.1e-14 Score=126.13 Aligned_cols=106 Identities=25% Similarity=0.376 Sum_probs=78.6
Q ss_pred CCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccccccC------------------------
Q 014852 288 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP------------------------ 343 (417)
Q Consensus 288 g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~irlp------------------------ 343 (417)
|.++||++||+|+++|+++.+|++.+ .+|.||++++++|.+.+++++..+..+.+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 57899999999999999999999987 59999999999999999999865432211
Q ss_pred ----------cc---HHHHHHHHHHHHH-HHHHcC--------CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 344 ----------NH---LHERLGLIRNAKL-RLEEKG--------VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 344 ----------~~---~~e~~~kI~~a~~-~L~e~g--------RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
.. ..+....+..++. .|++.. ...|++|||+.||||.++|+..++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 00 1112334566666 564333 334999999999999999999999988654
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.51 E-value=9.6e-17 Score=142.08 Aligned_cols=126 Identities=8% Similarity=0.037 Sum_probs=98.0
Q ss_pred HHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccccccCcc
Q 014852 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345 (417)
Q Consensus 266 re~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~irlp~~ 345 (417)
|+.|+..|.+.|+.+|.+++++..++||++||+|+++|+++++|++.. .|.+|++++++|.+++++++.......+.
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~~~~~~e- 79 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEAQTSQSD- 79 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSCCCCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCcccCCcc-
Confidence 667899999999999999999999999999999999999999999764 79999999999999999886532111011
Q ss_pred HHHHHHHHHHHHHHHHHcC---------CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 346 LHERLGLIRNAKLRLEEKG---------VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 346 ~~e~~~kI~~a~~~L~e~g---------RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
..+....+..++..|++.. .+.|++|||+.||||+++|+..+.++++.+
T Consensus 80 ~~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 80 AEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEI 137 (157)
T ss_dssp CSSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1111122344444443322 335999999999999999999999998765
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.43 E-value=1.1e-14 Score=141.37 Aligned_cols=127 Identities=9% Similarity=-0.035 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccccc
Q 014852 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 341 (417)
Q Consensus 262 ~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~ir 341 (417)
+..+|+.|+..|.+.++.+|.+++++..++||++||.|+.+|+...+|++.. .|.||++++++|.+++++|.......
T Consensus 19 ~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~~--~~~~wL~~ia~n~~~d~~r~~~~~~~ 96 (286)
T 3n0r_A 19 SEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANL--SPRVALYRVFHAIWLSSGAQLEVGHD 96 (286)
T ss_dssp -CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSSS--CHHHHHHHHHHHHHSCTTC----CCC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCCc--ChHHHHHHHHHHHHHhhccccccCCC
Confidence 3368999999999999999999999999999999999999999999999764 79999999999998888775332111
Q ss_pred cCccHHHHHHHHHHHHHHHHHcCCC---------ccHHHHHHHcCCCHHHHHHHHHHhCcc
Q 014852 342 LPNHLHERLGLIRNAKLRLEEKGVT---------PSVDRIAEYLNMSQKKVRNATEAIGKV 393 (417)
Q Consensus 342 lp~~~~e~~~kI~~a~~~L~e~gRe---------pS~eEIAe~LGIS~etVr~aL~rark~ 393 (417)
.. .+....+..++..|++..|+ .+++|||+.||+++++|+..+.++++.
T Consensus 97 ~~---~~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~~ 154 (286)
T 3n0r_A 97 QG---LHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAE 154 (286)
T ss_dssp CC---CCTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cc---cchHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 11 11123467777777654444 499999999999999999998887643
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.28 E-value=7.6e-12 Score=104.01 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=64.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhccc
Q 014852 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339 (417)
Q Consensus 264 ~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~r~ 339 (417)
.|++.|+..|.+.|+.+|.++ ++..++||++||+|+.+|+.+.+|++.. .|.+|++++++|.+++++|+..+.
T Consensus 24 ~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~~--~~~~wl~~i~~n~~~d~~R~~~~~ 96 (112)
T 2o7g_A 24 RALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSARS--SARTWLLAIARHVVADHIRHVRSR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCSS--CHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999 8889999999999999999999999753 799999999999999998876643
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.15 E-value=3.6e-11 Score=95.54 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhHHHHHHhhc
Q 014852 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (417)
Q Consensus 261 ~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i~~~Ird~~ 337 (417)
++..+++.|+..|.+.++.+|.+++++..++||++||+|+.+|+.+++|++.. .|.+|++.+++|.++++++++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~~--~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGT--NLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999763 8999999999999998887654
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.76 E-value=2.5e-09 Score=101.78 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=94.9
Q ss_pred HHHHhh-hhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhh----hhHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhH
Q 014852 255 LQSILM-ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV----QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 329 (417)
Q Consensus 255 Lr~~l~-~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLI----QEG~IgLikAierFD~~rG~rFsTYA~~~IR~~i 329 (417)
|..++. .+..+++.+...|.++++.+............|+. ||.|+.+|+.+..|++.. .|.+|++++++|.+
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~ 164 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLS 164 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEEC
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHH
Confidence 444444 34567999999999999999888777778889997 999999999999998754 79999999999877
Q ss_pred HHHHHhhcccccc----------CccHHHHH----HHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhCcccc
Q 014852 330 SRALVENSRTLRL----------PNHLHERL----GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 395 (417)
Q Consensus 330 ~~~Ird~~r~irl----------p~~~~e~~----~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rark~LS 395 (417)
.++.+.......+ +....... .+-+.++. |- ....|++|||+.||+|++||+..++++++.+-
T Consensus 165 ~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~-L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 165 ADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILR-CI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp SCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHH-HH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHH-HH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 6654321100000 00111111 11111111 11 23459999999999999999999999987663
No 16
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=96.63 E-value=0.027 Score=58.16 Aligned_cols=44 Identities=9% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 350 ~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
.+.|...+..|.. +...|++|||+.||||.++|++++.++.+.|
T Consensus 380 eR~VI~LRygL~~-~e~~TleEIAe~LgIS~erVRqi~~RAlkKL 423 (438)
T 1l9z_H 380 EAMVLKLRKGLID-GREHTLEEVGAYFGVTRERIRQIENKALRKL 423 (438)
T ss_pred HHHHHHHHHhccC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3445554444431 3567999999999999999999999987665
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=95.69 E-value=0.0026 Score=50.87 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=26.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.|||+..+|+..++++++.+
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345999999999999999999999998654
No 18
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=95.35 E-value=0.095 Score=53.54 Aligned_cols=44 Identities=7% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 350 ~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
.+.|......|. .+...|++|||+.||||.++|++++.+|.+.|
T Consensus 365 er~Vl~lr~~L~-~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kL 408 (423)
T 2a6h_F 365 EAMVLKLRKGLI-DGREHTLEEVGAFFGVTRERIRQIENKALRKL 408 (423)
T ss_dssp HHHHHHHHHHTT-CC-----CHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 344445444443 13456999999999999999999999887665
No 19
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=95.20 E-value=0.25 Score=44.27 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=26.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||||.++|+.+++++++.|
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456999999999999999999999987654
No 20
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=94.59 E-value=0.013 Score=48.48 Aligned_cols=30 Identities=3% Similarity=0.269 Sum_probs=26.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||||.++|++.+.++.+.+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456999999999999999999999887654
No 21
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.15 E-value=0.0051 Score=45.87 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=26.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||+|..+|+..++++++.+
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 346999999999999999999999998665
No 22
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=93.30 E-value=0.033 Score=42.52 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=28.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
....|++|||+.||++..+|+..+.++.+.+-.
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 345699999999999999999999998876643
No 23
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.29 E-value=0.059 Score=40.38 Aligned_cols=30 Identities=3% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||+|..+|+..+.++.+.+
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 457999999999999999999999988765
No 24
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=93.01 E-value=0.024 Score=47.57 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||+|+.+|+..++++++.+
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345999999999999999999999887644
No 25
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=92.37 E-value=0.024 Score=51.01 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
.|++|||+.||||+.+|+..+.++++.+
T Consensus 215 ~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 215 QTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 4899999999999999999999998754
No 26
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=92.31 E-value=0.073 Score=42.05 Aligned_cols=30 Identities=10% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||||.++|+..+.++.+.+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567999999999999999999999987655
No 27
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.04 E-value=0.086 Score=40.05 Aligned_cols=30 Identities=7% Similarity=0.350 Sum_probs=26.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
...|++|||+.||+|.++|+..+.++.+.+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456999999999999999999998887655
No 28
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=91.98 E-value=0.026 Score=60.21 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=33.1
Q ss_pred hhhhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHH
Q 014852 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268 (417)
Q Consensus 189 ~~~~~~~yl~~i~~~~lLt~~eE~eLirk~k~Gd~l~~~~~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~ 268 (417)
..|.++|||++++..|+||+++|++|+++|..|.. ++...+.+++.+.+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~------------------------------~~~~~~~~~P~ti~~ 143 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN------------------------------QVQCSVAEYPEAITY 143 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHHH------------------------------HHHHHHHSCHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhHH------------------------------HHHHHHccCHHHHHH
Confidence 34899999999999999999999999999999985 566777777788888
Q ss_pred HHHHhHHHH
Q 014852 269 LVMSNVRLV 277 (417)
Q Consensus 269 LIe~yl~LV 277 (417)
|+.-|-.+.
T Consensus 144 il~~~~~l~ 152 (613)
T 3iyd_F 144 LLEQYNRVE 152 (613)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 29
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.66 E-value=0.02 Score=46.33 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|++|||+.|||+..+|+..+.++++.+..
T Consensus 42 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 42 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3489999999999999999999998876543
No 30
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=90.60 E-value=0.058 Score=45.32 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
..|+.|||+.||+|..+|+..++++++.+
T Consensus 38 g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 38 DYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35999999999999999999999887543
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=90.36 E-value=0.12 Score=37.34 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=26.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|.+|||+.||+|+.+|+..+.++.+.+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 3589999999999999999999998876644
No 32
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.16 E-value=0.15 Score=39.81 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 395 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~LS 395 (417)
...|++|||+.|||+..+|+..+.++++.+.
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3469999999999999999999999887664
No 33
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=88.75 E-value=0.65 Score=36.58 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|..||+.|||+.+|+|..+|+.-+....
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7889999999999999999999887654
No 34
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=87.96 E-value=0.18 Score=39.87 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=27.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|++|||+.|||+..+|+..+.++++.+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3589999999999999999999999877643
No 35
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=87.30 E-value=0.36 Score=38.65 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=27.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|.+|||+.|||++.||+..+.++.+++.+
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3599999999999999999999998877654
No 36
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=86.79 E-value=0.32 Score=36.17 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.6
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|+.|||+.||+|..+|+..+.++.+.+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3499999999999999999999988766543
No 37
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=86.23 E-value=0.38 Score=39.34 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=27.1
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rark~LSLD 397 (417)
.+.+|||+.|||++.+|+..+.++.+.+.+.
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999999999988776543
No 38
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=85.25 E-value=0.61 Score=31.17 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.0
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.++.|||+.|||+..+|...+...+
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 5899999999999999999886543
No 39
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=85.03 E-value=1 Score=33.93 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=28.0
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|.+.+...+..|||+.||+|..+|..++...+
T Consensus 16 L~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 16 LQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444445668999999999999999999988765
No 40
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=84.27 E-value=1.5 Score=30.93 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~r 389 (417)
.|+.|||+.||++..+|...+..
T Consensus 32 ~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 32 YTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHh
Confidence 49999999999999999988653
No 41
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=81.73 E-value=2.5 Score=33.19 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++.|.+. ..+++.|||+.||+|+.||+.-+...-
T Consensus 6 ~Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 6 QVRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp HHHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344445543 457999999999999999999877643
No 42
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=80.77 E-value=2.9 Score=33.06 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|...|..|||+.||++..+|+..+.+..
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4568999999999999999999998875
No 43
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=79.32 E-value=2.9 Score=32.48 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+...|..|||+.||++..+|...+....
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999988765
No 44
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=79.22 E-value=1.8 Score=34.63 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 356 a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+.-|...| .|..|||+.||++..+|++.+....
T Consensus 22 IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 22 AIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 333454445 8999999999999999999988764
No 45
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=77.69 E-value=2.9 Score=33.72 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++.|.. ...+++.|||+.||+|+.||+.-+...-
T Consensus 6 ~Il~~L~~-~g~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 6 EVRDMLAL-QGRMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444544 3457999999999999999999887654
No 46
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=76.89 E-value=2 Score=39.29 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
...|.+|||+.||||+.||+..+.++++++..
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 34599999999999999999999999877644
No 47
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=76.82 E-value=1.1 Score=41.11 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=27.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|.+|||+.||||+.||+..+.++++++..
T Consensus 190 g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 190 GKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3489999999999999999999998877644
No 48
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=76.60 E-value=4.3 Score=36.35 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=32.3
Q ss_pred HHHHHHHHHH-HHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 350 LGLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 350 ~~kI~~a~~~-L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++..++.. +.+.|..||+.|||+.||++..+|...+.+..
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le 49 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE 49 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3445555444 45678899999999999999999999887653
No 49
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=74.56 E-value=1.7 Score=40.16 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=27.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|.+|||+.||||+.||+..+..+.+++..
T Consensus 190 G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 190 GKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 3489999999999999999999998877654
No 50
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=72.97 E-value=3.3 Score=32.67 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014852 348 ERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (417)
Q Consensus 348 e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rark 392 (417)
+....+.+++..|++ +...|..+||+.||++...|.+.+....+
T Consensus 12 ~~~~~v~~~i~~L~~-~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k 55 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNT-NDYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp HHHHHHHHHHHTSCT-TCEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455667777777764 44479999999999999999999887654
No 51
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=72.62 E-value=7.4 Score=34.60 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 351 ~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..+.+..|...++..|..|||+.+|+|..||++.+....
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455556666666778999999999999999999887654
No 52
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=72.55 E-value=4.6 Score=33.48 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=21.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark 392 (417)
.+.|+.|||+.||+|..+|-.. .++.+
T Consensus 57 ge~TQREIA~~lGiS~stISRi-~r~L~ 83 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRG-SNSLK 83 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence 3579999999999999999877 44433
No 53
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=71.34 E-value=5 Score=32.20 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=26.9
Q ss_pred HHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+...|..++..|||+.+|++..+|+.++....
T Consensus 26 ~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 26 ILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp HHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 343346568999999999999999999988754
No 54
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=69.65 E-value=2.2 Score=40.24 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=27.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..|.+|||+.||||+.||+..+..+.+++..
T Consensus 212 G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 212 GKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3489999999999999999999998877644
No 55
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=68.77 E-value=3.8 Score=27.58 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~r 389 (417)
.|..|||+.+||+..||...+..
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999987654
No 56
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=68.28 E-value=5.2 Score=34.71 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 356 a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..|.+.+| .+..|||+.+|+|..+|..++.+..
T Consensus 8 il~~L~~~~~-~s~~~la~~lg~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 8 ILRILQEDST-LAVADLAKKVGLSTTPCWRRIQKME 42 (162)
T ss_dssp HHHHHTTCSC-SCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444555455 4999999999999999999988764
No 57
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=67.91 E-value=8.5 Score=29.29 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=23.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++..|||+.+|++..+|...+....
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357999999999999999999887654
No 58
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=67.90 E-value=25 Score=28.28 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=23.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|||+.+|++..+|...+....
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456999999999999999999887654
No 59
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=67.08 E-value=8.8 Score=35.21 Aligned_cols=26 Identities=35% Similarity=0.234 Sum_probs=24.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|++|||+.||||..+|..++..|+
T Consensus 24 g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 24 GMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 37999999999999999999999887
No 60
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=66.61 E-value=7.9 Score=32.68 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=27.0
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...++ .+..|||+.+|+|..+|...+.+..
T Consensus 11 l~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 11 IEELKKDSR-LSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp HHHHHHCSC-CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344554444 7999999999999999999988754
No 61
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=66.02 E-value=3.9 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=25.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~L 394 (417)
..|+.|||+.||||..+|..++.+++..+
T Consensus 34 g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 34 GKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34899999999999999999999998654
No 62
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=65.54 E-value=7.4 Score=31.02 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014852 345 HLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (417)
Q Consensus 345 ~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rark 392 (417)
...+...+|.++ |.+.|..++..|||+.+|++.++|..++...++
T Consensus 16 ~~~d~eekVLe~---LkeaG~PlkageIae~~GvdKKeVdKaik~LKk 60 (80)
T 2lnb_A 16 REGHLEQRILQV---LTEAGSPVKLAQLVKECQAPKRELNQVLYRMKK 60 (80)
T ss_dssp HHHHHHHHHHHH---HHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHH---HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444 555688889999999999999999999998774
No 63
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=65.52 E-value=8.6 Score=32.51 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...++ .+..|||+.+|+|..+|..++.+..
T Consensus 15 l~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 15 VKILSENSR-LTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHCTT-CCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344554444 7999999999999999999987754
No 64
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=65.27 E-value=8.2 Score=33.17 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 356 a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..|...++ .|..|||+.+|+|..+|..++.+..
T Consensus 15 il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~ 49 (162)
T 2p5v_A 15 ILQVLQENGR-LTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp HHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344555555 6999999999999999999988754
No 65
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=65.02 E-value=4.9 Score=30.24 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
+|+.|||+.+|+|..+|..++.--
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 378999999999999999998754
No 66
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=64.41 E-value=24 Score=28.47 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=40.5
Q ss_pred hhHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 318 sTYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
-.|+.+.+.+.+.+.+.+......++...... +..|...+ .++..+||+.+|++..+|...+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~i-------L~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 8 LGRLIHMVNQKKDRLLNEYLSPLDITAAQFKV-------LCSIRCAA-CITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHH-------HHHHHHHS-SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHH-------HHHHHhcC-CCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 34555666666666665554444443322221 22222222 46999999999999999999887754
No 67
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=63.77 E-value=9.4 Score=32.39 Aligned_cols=34 Identities=9% Similarity=0.234 Sum_probs=26.9
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...++ .+..|||+.+|+|..+|...+.+..
T Consensus 13 l~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~ 46 (151)
T 2cyy_A 13 IKILQNDGK-APLREISKITGLAESTIHERIRKLR 46 (151)
T ss_dssp HHHHHHCTT-CCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555454 7999999999999999999887754
No 68
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=62.90 E-value=26 Score=28.35 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 320 YA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|..+.+.+.+.+.+........++... ..++..|...+ ...+..|||+.+|++..+|...+.+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~-------~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 72 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQ-------GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE 72 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHH-------HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHH-------HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 344445555555555444333333222 12223333333 467999999999999999999887754
No 69
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=62.68 E-value=9.6 Score=33.57 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 356 a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..|...++ .+..|||+.+|+|..+|...+.+..
T Consensus 32 IL~~L~~~~~-~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 32 IIKILQNDGK-APLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp HHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444555454 7999999999999999999988754
No 70
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=62.53 E-value=9.7 Score=33.48 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 356 AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 356 a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..|...++ .|..|||+.+|+|..+|..++.+..
T Consensus 22 IL~~L~~~~~-~s~~eLA~~lglS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 22 ILRLLKKDAR-LTISELSEQLKKPESTIHFRIKKLQ 56 (171)
T ss_dssp HHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444555454 6999999999999999999988754
No 71
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=62.34 E-value=39 Score=27.29 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 320 YA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+....+.+.+.+.+........++......+ ..|... ...+..|||+.||++..+|...+.+..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL-------~~l~~~-~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYL-------VRVCEN-PGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHH-------HHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-------HHHHHC-cCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 3344444445445544443334443332222 223222 256999999999999999999887754
No 72
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=62.09 E-value=11 Score=30.44 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=21.1
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~r 389 (417)
+|+.+||+.+|+|..||...+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998754
No 73
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=61.92 E-value=11 Score=32.04 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...+ ..+..|||+.+|+|..+|...+.+..
T Consensus 14 l~~L~~~~-~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 14 LEALMGNA-RTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp HHHHHHCT-TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455444 36999999999999999999988754
No 74
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=61.65 E-value=33 Score=28.25 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=38.5
Q ss_pred hHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 319 TYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|..+.+.+.+.+.+........++.... .++..|.. ....+..|||+.+|++..+|...+.+..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 22 SFALYSANLAMHKLYRGLLKALDLTYPQY-------LVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHH-------HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHH-------HHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 34555555555555544433333332221 12222332 2357999999999999999999887654
No 75
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=61.57 E-value=30 Score=27.83 Aligned_cols=26 Identities=0% Similarity=-0.022 Sum_probs=23.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.++..|||+.+|++..+|..++.+..
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 57999999999999999999887754
No 76
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=61.38 E-value=16 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.++..+...+..++..|||+.||++..+|..++....
T Consensus 20 ~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le 56 (139)
T 2x4h_A 20 LTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE 56 (139)
T ss_dssp HHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH
Confidence 3444443345668999999999999999999887653
No 77
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=61.19 E-value=23 Score=29.18 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=39.2
Q ss_pred hHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 319 TYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|..+.+.+.+.+.+........++.... .++..|...+...++.|||+.+|++..+|...+.+.-
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~-------~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSY-------SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHH-------HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 44445555555555554433333332211 1222333334446999999999999999999887754
No 78
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=60.98 E-value=7.6 Score=32.66 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+-|+..++|+.+|||..+|+.++....
T Consensus 36 ~~LPser~La~~~gVSr~tVReAl~~L~ 63 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVSKAYQELE 63 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3557999999999999999999988753
No 79
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=60.82 E-value=11 Score=28.25 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.2
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.|+|+.+||+..+|.+.+.-
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 3469999999999999999988653
No 80
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=59.77 E-value=29 Score=28.80 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|||+.+|++..+|..++.+..
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357999999999999999999887754
No 81
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=59.64 E-value=15 Score=32.31 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark~LSLD 397 (417)
+..+.+|||+.|+++..||+..+.+.++++.+.
T Consensus 173 ~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~ 205 (225)
T 3klo_A 173 SGASNIEIADKLFVSENTVKTHLHNVFKKINAK 205 (225)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCS
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 346999999999999999999999999888654
No 82
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=59.41 E-value=8.7 Score=32.05 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+-||..|||+.+|+|..+|+.++....
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4557999999999999999999987654
No 83
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=59.07 E-value=13 Score=31.45 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=26.6
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...++ .+..|||+.+|+|..+|...+.+..
T Consensus 13 L~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~ 46 (150)
T 2w25_A 13 VRELAADGR-ATLSELATRAGLSVSAVQSRVRRLE 46 (150)
T ss_dssp HHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344554443 7999999999999999999887654
No 84
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=58.64 E-value=13 Score=30.70 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHHcCCC-ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRe-pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...+.. +|..|||+.+|++..+|...+....
T Consensus 32 l~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~ 67 (123)
T 3r0a_A 32 MKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH 67 (123)
T ss_dssp HHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444444 7999999999999999999988754
No 85
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=58.54 E-value=17 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCCccHHHHHHHc-----CCCHHHHHHHHHHh
Q 014852 364 GVTPSVDRIAEYL-----NMSQKKVRNATEAI 390 (417)
Q Consensus 364 gRepS~eEIAe~L-----GIS~etVr~aL~ra 390 (417)
...+|.+||++.| +++..||...+...
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4568999999999 99999999998844
No 86
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=58.47 E-value=25 Score=28.79 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67999999999999999999887654
No 87
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=58.47 E-value=31 Score=29.41 Aligned_cols=66 Identities=8% Similarity=-0.011 Sum_probs=40.2
Q ss_pred hHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 319 TYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|....+.+.+.+.+........+.... ..++..|...+..+++.|||+.+|++..+|-..+.+..
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q-------~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTH-------WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHH-------HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHH-------HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 4444555555555555544333333222 12233343334457999999999999999999887654
No 88
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.33 E-value=49 Score=26.42 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999887754
No 89
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=57.77 E-value=15 Score=30.45 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|...++ .+..|||+.+|+|..+|..++.+..
T Consensus 10 l~~L~~~~~-~~~~ela~~lg~s~~tv~~~l~~L~ 43 (141)
T 1i1g_A 10 LEILEKDAR-TPFTEIAKKLGISETAVRKRVKALE 43 (141)
T ss_dssp HHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334554444 5899999999999999999887654
No 90
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=57.52 E-value=45 Score=27.05 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=38.0
Q ss_pred hHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 319 TYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|....+.+.+.+.+........++...... . ..|... ...+..|||+.+|++..+|...+.+..
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~i----L---~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 12 SFDVNTTAKKMHLFLMRSIASYDVTPEQWSV----L---EGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCHHHHHH----H---HHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH----H---HHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 3444445555555555544333333222222 2 222221 356999999999999999999887654
No 91
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.29 E-value=43 Score=26.98 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+...+..|||+.+|++..+|...+....
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 4457999999999999999999887654
No 92
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=56.82 E-value=30 Score=28.84 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=23.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 57999999999999999999887754
No 93
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=55.95 E-value=47 Score=27.60 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=40.8
Q ss_pred hhhHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 317 ISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 317 FsTYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.-.+....+.+.+.+.+........++......+. .|.. ....++.|||+.+|++..+|...+.+.-
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~-------~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLM-------RLYR-EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHH-------HHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554444444443322222 2222 2346999999999999999999887654
No 94
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=55.40 E-value=16 Score=34.21 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
++.|. .||.|+..++|+.+|++.++|+.++....
T Consensus 28 lr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 28 LRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 33344 79999999999999999999999999885
No 95
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.83 E-value=43 Score=27.28 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 57999999999999999999887754
No 96
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=54.69 E-value=17 Score=27.90 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..++..|||+.+|++..+|...+....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999987754
No 97
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=53.90 E-value=15 Score=35.20 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=24.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rark 392 (417)
...++.|||+.||+|..||++.+..+++
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4489999999999999999999987763
No 98
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=53.72 E-value=49 Score=28.39 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|+++||..+|++.++|...+...+
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~ 188 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALA 188 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3999999999999999999988765
No 99
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=53.46 E-value=9.8 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=21.9
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.|++|+|+.|||+..+++++.+..
T Consensus 17 LTi~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred eCHHHHHHHHCcCHHHHHHHHHcC
Confidence 499999999999999999998764
No 100
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=53.42 E-value=35 Score=28.54 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++.|||+.+|++..+|-..+.+..
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999887654
No 101
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=53.36 E-value=43 Score=27.61 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+++.|||+.+|++..+|...+.+..
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456999999999999999998887653
No 102
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=53.31 E-value=35 Score=21.99 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHh
Q 014852 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL 259 (417)
Q Consensus 204 ~lLt~~eE~eLirk~k~Gd~l~~~~~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l 259 (417)
+.|++++-..++.....|. +..++|..+|+|...+...+
T Consensus 4 ~~l~~~~~~~i~~~~~~g~-----------------s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNV-----------------SLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----------------CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHCcCHHHHHHHH
Confidence 4567766555666555554 47789999999988765544
No 103
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.03 E-value=26 Score=27.61 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-cCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 353 IRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 353 I~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
+.++..-+.. ....+++++||+.+|+|..++.......
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555533 4456799999999999999998876543
No 104
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=52.94 E-value=14 Score=31.00 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 358 LRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 358 ~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|...+ ..+..|||+.+|++..+|...+.+..
T Consensus 10 ~~L~~~~-~~~~~ela~~lg~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 10 KILQYNA-KYSLDEIAREIRIPKATLSYRIKKLE 42 (150)
T ss_dssp HHHTTCT-TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444333 46999999999999999999988754
No 105
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=52.93 E-value=10 Score=30.85 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
++-|+..|||+.+|+|..+|+.++....
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3446999999999999999999988754
No 106
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=52.78 E-value=22 Score=27.54 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCccHHHHHHHcCCCHHH-HHHHHHHhC
Q 014852 354 RNAKLRLEEKGVTPSVDRIAEYLNMSQKK-VRNATEAIG 391 (417)
Q Consensus 354 ~~a~~~L~e~gRepS~eEIAe~LGIS~et-Vr~aL~rar 391 (417)
...+..+...+..+++.|||+.+|++..+ |...+.+..
T Consensus 18 l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 18 LPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 33444555555568999999999999999 888776653
No 107
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=52.56 E-value=40 Score=27.71 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|..|||+.+|++..+|...+.+..
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47999999999999999999887754
No 108
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=52.47 E-value=27 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...|..|||+.+|++..+|...+....
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999987754
No 109
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=52.39 E-value=11 Score=30.89 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+-|+..+||+.+|+|..+|+.++....
T Consensus 32 ~lPs~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 32 MIPSIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999999999999987643
No 110
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=52.23 E-value=24 Score=28.96 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=9.2
Q ss_pred ccHHHHHHHcCCCHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~a 386 (417)
.|++|+|+.+||+..+|..+
T Consensus 21 lSq~eLA~~~gis~~~is~i 40 (112)
T 2wus_R 21 ITLLDASLFTNINPSKLKRI 40 (112)
T ss_dssp CCHHHHHHHSSCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 34444444444444444443
No 111
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=52.10 E-value=29 Score=26.13 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
.+..|+.|+|+.+|++..+|.+++.-
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34579999999999999999988754
No 112
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=51.79 E-value=22 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++..|||+.||++..+|..++....
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 358999999999999999999887653
No 113
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=51.66 E-value=20 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 351 ~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
..+...+..+.. .+..|+.++|+.+||+..+|.+...-
T Consensus 16 ~~l~~~l~~~R~-~~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 16 RRLKAIYEKKKN-ELGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHHHHHHHHHHH-HHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 334444443321 23469999999999999999887653
No 114
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=51.43 E-value=29 Score=31.81 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=41.7
Q ss_pred ccCccHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 341 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 341 rlp~~~~e~~~kI~~a~~~L~e~gRe-pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+|.....++....+.+..|.+.|.+ +|-+|||+.+|++..+|+.=+...
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 46777778888888888999877766 599999999999999999876653
No 115
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=51.41 E-value=41 Score=27.48 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=23.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999987754
No 116
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=51.18 E-value=15 Score=30.86 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+-|+..+||+.+|+|..+|+.++....
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L~ 53 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLV 53 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456999999999999999999988754
No 117
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=50.76 E-value=16 Score=33.92 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 351 ~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
..|++.+..++.-.+-|+..|+|+.+|+|..||++++...
T Consensus 21 ~~l~~~I~~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 21 AELDRMLDGMRIGDPFPAEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp HHHHHHHHHCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444334444566899999999999999999998764
No 118
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=50.76 E-value=31 Score=31.71 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=40.0
Q ss_pred ccCccHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 341 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 341 rlp~~~~e~~~kI~~a~~~L~e~gRe-pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+|.....++....+.+..|.+.|.+ +|-+|||+.+|++..+|+.=+...
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~f 57 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYF 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 57888888899999999999887766 599999999999999999876543
No 119
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.55 E-value=40 Score=27.23 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 47999999999999999999887654
No 120
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=50.08 E-value=27 Score=28.53 Aligned_cols=26 Identities=4% Similarity=0.160 Sum_probs=22.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..++.|||+.+|++..+|...+.+..
T Consensus 50 ~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 50 KLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 46999999999999999999887654
No 121
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=49.97 E-value=16 Score=28.68 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=25.4
Q ss_pred HHHHcCCCccHHHHHHHcCCCHH-HHHHHHHHhC
Q 014852 359 RLEEKGVTPSVDRIAEYLNMSQK-KVRNATEAIG 391 (417)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~e-tVr~aL~rar 391 (417)
-|...| ..|..+||+.|||+.. .|+..+....
T Consensus 19 ~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le 51 (79)
T 1xmk_A 19 YLFNVS-DSSALNLAKNIGLTKARDINAVLIDME 51 (79)
T ss_dssp HHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 344433 5699999999999999 9999987754
No 122
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=49.82 E-value=24 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~ 388 (417)
..|++|+|+.+||+..+|.++..
T Consensus 27 gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 35899999999999999888765
No 123
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=49.49 E-value=36 Score=27.21 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 57999999999999999999887754
No 124
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=49.40 E-value=29 Score=27.70 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH-cCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 352 LIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 352 kI~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+.+++.-+.. ....+++++||+.+|++..++.......
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35556666654 3455799999999999999998776543
No 125
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=49.25 E-value=33 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+|++..+|.+...-
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4469999999999999999887653
No 126
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=49.22 E-value=32 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.0
Q ss_pred HHcCCCccHHHHHHHcCCC-HHHHHHHHHHhC
Q 014852 361 EEKGVTPSVDRIAEYLNMS-QKKVRNATEAIG 391 (417)
Q Consensus 361 ~e~gRepS~eEIAe~LGIS-~etVr~aL~rar 391 (417)
.+.|-.||+.|||+.+|++ ..+|.+.+....
T Consensus 20 ~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~ 51 (202)
T 1jhf_A 20 SQTGMPPTRAEIAQRLGFRSPNAAEEHLKALA 51 (202)
T ss_dssp HHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3456667999999999999 999988876543
No 127
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=49.03 E-value=79 Score=26.48 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=53.7
Q ss_pred HHHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHH
Q 014852 230 RLKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (417)
Q Consensus 230 ~l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikA 305 (417)
++-...|. ..|..++|..+|+|...+..--..-.+-+..++..+...+..........+.+..+.+...+..++..
T Consensus 25 ~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (212)
T 3knw_A 25 HLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKD 101 (212)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 34455665 58999999999999999998887766777778777776666666555444556666665555555544
No 128
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=48.98 E-value=26 Score=25.98 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=19.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|++++|+.+||+..+|.++..
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 446888999999999888887754
No 129
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=48.91 E-value=38 Score=24.10 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcC--CCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLN--MSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LG--IS~etVr~aL~r 389 (417)
+..|++|+|+.+| ++..+|.+...-
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 4569999999999 999999887654
No 130
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=48.87 E-value=31 Score=27.22 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH-cC-CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 352 LIRNAKLRLEE-KG-VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 352 kI~~a~~~L~e-~g-RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
.+.++..-+.. .. ..+++++||+.+|+|..++......
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35555566654 34 5679999999999999999877654
No 131
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=48.76 E-value=14 Score=32.14 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=27.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rark~LSLD 397 (417)
.|.+|||+.|+++..||+..+.+.++++...
T Consensus 170 ~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 170 LPNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999988877543
No 132
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.76 E-value=19 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=23.8
Q ss_pred CCccHHHHHHHc-----CCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYL-----NMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~L-----GIS~etVr~aL~rar 391 (417)
..+|.+||++.+ +++..||...+....
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 578999999999 999999999887653
No 133
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.53 E-value=41 Score=27.73 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56999999999999999999887754
No 134
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=48.49 E-value=37 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46999999999999999999887754
No 135
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=48.42 E-value=43 Score=27.98 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=40.0
Q ss_pred hhhHHHHHHHhhHHHHHHhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 317 ISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 317 FsTYA~~~IR~~i~~~Ird~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...|..+.+.+.+.+.+........++.... .++..|...+ ..++.|||+.+|++..+|-..+.+..
T Consensus 19 ~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~-------~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 19 RLSYMIARVDRIISKYLTEHLSALEISLPQF-------TALSVLAAKP-NLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCHHHH-------HHHHHHHHCT-TCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH-------HHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555555555554433333332221 2222333333 57999999999999999998887654
No 136
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=48.42 E-value=21 Score=29.77 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.||+.+||+.||++..+|.+++...-
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 38999999999999999999988754
No 137
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=48.35 E-value=64 Score=27.11 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 358 LRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 358 ~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|...+...++.|||+.+|++..+|-..+.+.-
T Consensus 38 ~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 38 YNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp HHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344445566889999999999999998887654
No 138
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=48.32 E-value=13 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+|++..+|.+...-
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3469999999999999999987653
No 139
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=48.11 E-value=34 Score=28.05 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..++..|||+.+|+|...|++++....
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~ 51 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR 51 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999987755
No 140
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=48.09 E-value=21 Score=30.71 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=27.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~LSL 396 (417)
..+.+|||+.||++..||+..+.++++++..
T Consensus 157 g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 157 GLMNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 3589999999999999999999988877754
No 141
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=48.08 E-value=35 Score=24.64 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=20.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|+.++|+.+|++..+|..+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 346899999999999999988764
No 142
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=47.81 E-value=29 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=19.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|++|+|+.+||+..+|.++..-
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3468888888888888888877654
No 143
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=47.30 E-value=14 Score=30.93 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+-|+..+||+.+|+|..+|+.++....
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKELE 60 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446999999999999999999988753
No 144
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=47.16 E-value=30 Score=28.06 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=39.2
Q ss_pred hhhHHHHHHHhhHHHHH-HhhccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 317 ISTYVYWWIRQGVSRAL-VENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 317 FsTYA~~~IR~~i~~~I-rd~~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...|....+.+.+.+.+ ........++.... .++..|...+ ..+..|||+.+|++..+|...+....
T Consensus 9 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-------~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~ 76 (142)
T 2bv6_A 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQF-------LVLTILWDES-PVNVKKVVTELALDTGTVSPLLKRME 76 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHH-------HHHHHHHHSS-EEEHHHHHHHTTCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH-------HHHHHHHHcC-CcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 34455555555555555 43332223332211 1222333323 47999999999999999999887754
No 145
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=47.04 E-value=8.9 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+.+|+.|||+.+|++..+|..+++
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHc
Confidence 347999999999999999988765
No 146
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=46.79 E-value=33 Score=27.06 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-cCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 353 IRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 353 I~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+.++..-+.. ....+++++||+.+|+|..++......
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444444532 455679999999999999999776544
No 147
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=46.56 E-value=26 Score=32.44 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=41.4
Q ss_pred ccCccHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHcCCCHHHHHHHHHH
Q 014852 341 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 341 rlp~~~~e~~~kI~~a~~~L~e~gRe-pS~eEIAe~LGIS~etVr~aL~r 389 (417)
.+|....+++....+.+..|.+.|.+ +|-+|||+.+|++..+|++=+..
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~ 55 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSY 55 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHH
Confidence 56877888888888899999877766 49999999999999999987654
No 148
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=46.44 E-value=14 Score=26.17 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+||+..+|.+.+.-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3469999999999999999988654
No 149
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=46.08 E-value=22 Score=27.64 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.3
Q ss_pred hhCCCCchHHHHHHhcCChHHHHH
Q 014852 234 RLGCEPSMEQLAASLRISRPELQS 257 (417)
Q Consensus 234 ~lg~eps~~e~A~~~~~s~~eLr~ 257 (417)
..|.+|+..|+|..+|+|...++.
T Consensus 20 ~~g~~psv~EIa~~lgvS~~TVrr 43 (77)
T 2jt1_A 20 DDGAPVKTRDIADAAGLSIYQVRL 43 (77)
T ss_dssp HTTSCEEHHHHHHHHTCCHHHHHH
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHH
Confidence 358899999999999999877664
No 150
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=46.06 E-value=45 Score=29.00 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHH--ccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Q 014852 204 ELLTHAEVVRLSKKIK--TGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (417)
Q Consensus 204 ~lLt~~eE~eLirk~k--~Gd~l~~~~~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA 281 (417)
+.+|.++-.+|+...- ..++|++ .+++.+-||+|+..+.. |.. .+-.-.
T Consensus 43 ~~~t~~e~~~lI~~yl~R~d~ELeq--l~~~rR~gRp~s~Re~~---------L~~------------------~~~~E~ 93 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIERDDTELDE--LKKKRRSNRPPSNRQVL---------LQQ------------------RRDQEL 93 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHGGGTCCCTTHHHH---------HHH------------------HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHH--HHHhhCCCCCCchHHHH---------HHH------------------HHHHHH
Confidence 5699999999987653 3333333 33456789998755522 111 122233
Q ss_pred HHccCCCCChhhhhhhHHHHHHHHHhhcCCCCC
Q 014852 282 QRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314 (417)
Q Consensus 282 ~Ry~~~g~e~EDLIQEG~IgLikAierFD~~rG 314 (417)
..|.. |+..-||..+.++.+++ .||++-+
T Consensus 94 ~ey~t-G~~iPDLtd~~nvk~Lr---~W~G~~~ 122 (144)
T 2kkm_A 94 KEFKA-GFLCPDLSDAKNMEFLR---NWNGTFG 122 (144)
T ss_dssp HHHHT-TEEEECSCCHHHHHHHH---TCSSCST
T ss_pred HHHcc-CccCCCCCCHHHHHHHH---HcCCChh
Confidence 44554 99999999999988775 7877653
No 151
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=45.67 E-value=15 Score=26.24 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=21.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+||+..+|.+...-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3469999999999999999988654
No 152
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=45.56 E-value=58 Score=28.21 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+|+++||..+|++.++|...+...+
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 35999999999999999999988765
No 153
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=45.35 E-value=35 Score=27.74 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.++..|||+.+|++..+|...+.+..
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 56999999999999999999887654
No 154
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=45.35 E-value=1.3e+02 Score=24.83 Aligned_cols=77 Identities=8% Similarity=0.026 Sum_probs=55.5
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHh
Q 014852 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 231 l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAie 307 (417)
|-...|.. .|..++|..+|+|...+..--..-.+-+..++..+...+............+..+.+...+..++..+.
T Consensus 29 l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 106 (206)
T 3kz9_A 29 VFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNAMIELVV 106 (206)
T ss_dssp HHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 44556765 899999999999999999888777777888888877777766666555555666666555555554443
No 155
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=45.31 E-value=14 Score=27.34 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.8
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+..|+|+.||||..|+.......
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 478999999999999999886654
No 156
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=45.16 E-value=30 Score=27.43 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=20.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|++|+|+.+||+..+|.++..-
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4568999999999999998887643
No 157
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=45.14 E-value=1.4e+02 Score=25.02 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHh
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAie 307 (417)
+-...|. ..|..++|+.+|+|...+..--..-.+.+..++..+...+............+..+-+...+..++..+.
T Consensus 43 l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (218)
T 3dcf_A 43 LFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTIL 120 (218)
T ss_dssp HHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4445564 4889999999999999988877766667777777766666655555444445555555555555554443
No 158
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=44.87 E-value=33 Score=25.58 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+||+..+|.+...-
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4569999999999999999887653
No 159
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=44.81 E-value=45 Score=25.94 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+++++||+.+|+|..++.......
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6799999999999999998766543
No 160
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=44.75 E-value=75 Score=25.55 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+...+..|||+.+|++..+|...+....
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 3457999999999999999999887754
No 161
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=44.48 E-value=1.2e+02 Score=24.87 Aligned_cols=81 Identities=7% Similarity=0.005 Sum_probs=54.9
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHcc-CCCCChhhhhhhHHHHHHHHHhh
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYD-NMGADMADLVQGGLIGLLRGIEK 308 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~-~~g~e~EDLIQEG~IgLikAier 308 (417)
+-...|- ..|..++|+.+|+|...+..--..-++-+..++..+..-+........ ..+.+..+-+...+..+++.+..
T Consensus 22 lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (197)
T 3rd3_A 22 IMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACP 101 (197)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCT
T ss_pred HHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 4445665 489999999999999988877776666677777776666665555553 33456666666666666655554
Q ss_pred cCC
Q 014852 309 FDS 311 (417)
Q Consensus 309 FD~ 311 (417)
...
T Consensus 102 ~~~ 104 (197)
T 3rd3_A 102 PCD 104 (197)
T ss_dssp TSS
T ss_pred Ccc
Confidence 443
No 162
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=44.38 E-value=19 Score=31.77 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=27.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rark~LSLD 397 (417)
.|.+|||+.|+++..||+..+.+.++++...
T Consensus 165 ~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 165 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999888777553
No 163
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=44.27 E-value=1.3e+02 Score=24.71 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=53.6
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhh
Q 014852 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (417)
Q Consensus 230 ~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAier 308 (417)
++-...|...|.+++|+.+|+|...+..--..-++-+..++..+...+............+..+.+...+-.++..+..
T Consensus 20 ~lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (190)
T 3jsj_A 20 ALTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERVESQAGA 98 (190)
T ss_dssp HHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Confidence 3445567568899999999999999988877666777777777766665555444344445666666555555555443
No 164
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=44.20 E-value=7.6 Score=30.88 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+-|+..|||+.+|+|..+|+.++....
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3446999999999999999999987654
No 165
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=44.15 E-value=37 Score=31.21 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|...+...+..|||+.+|++..+|...+....
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~ 48 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE 48 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344454455568999999999999999999987653
No 166
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=44.13 E-value=40 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 014852 368 SVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~r 389 (417)
|+.|+|+.+||+..+|.++..-
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 8889999999999988887653
No 167
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=44.13 E-value=44 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=19.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..|+.|+|+.+||+..+|.+...
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4456888888888888888877654
No 168
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=44.10 E-value=18 Score=28.00 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.++.+||+.+||+..+|...+....
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4899999999999999998876544
No 169
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=44.10 E-value=35 Score=26.05 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~ 59 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLL 59 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47999999999999999999987754
No 170
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.81 E-value=40 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|+.|+|+.+|++..+|.+...
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 346899999999999999988764
No 171
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=43.41 E-value=1.3e+02 Score=24.47 Aligned_cols=76 Identities=13% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHH
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAi 306 (417)
+-...|- ..|..++|+.+|+|...+...-..-.+.+..+++.+...+............+..+.+...+..++..+
T Consensus 21 l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (195)
T 3ppb_A 21 LFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWA 97 (195)
T ss_dssp HHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh
Confidence 4445564 478999999999999999988777767788888877777776666655555566666665555555444
No 172
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=43.07 E-value=25 Score=32.46 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=24.7
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 363 KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
-.+-|+..|+|+.+|+|..+|++++....
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~ 59 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLV 59 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34567999999999999999999987643
No 173
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=42.92 E-value=35 Score=24.66 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+|++..+|.+...-
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3468999999999999999887654
No 174
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.45 E-value=71 Score=25.80 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..+||+.+|++..+|...+.+..
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~Le 75 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLRELE 75 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 457999999999999999999887754
No 175
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=42.39 E-value=38 Score=27.87 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...|..|||+.+|++..+|...+.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 50 EALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp SCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457999999999999999999887754
No 176
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=42.16 E-value=49 Score=28.50 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|.++||..+|++.++|...+...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35999999999999999999988765
No 177
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=42.11 E-value=39 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|++|+|+.+|++..+|.++..-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4579999999999999999887643
No 178
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=42.06 E-value=36 Score=31.26 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|...+...+..|||+.+|++..+|...+....
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~ 46 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE 46 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344444445567999999999999999999988654
No 179
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.85 E-value=36 Score=27.29 Aligned_cols=26 Identities=4% Similarity=0.005 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 47999999999999999999887754
No 180
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=41.82 E-value=1.4e+02 Score=24.48 Aligned_cols=75 Identities=8% Similarity=-0.117 Sum_probs=50.5
Q ss_pred HHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHH
Q 014852 229 LRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303 (417)
Q Consensus 229 ~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLi 303 (417)
.++-...|-. .|.+++|+.+|+|...+..--..-++-+..++..+..-+............+..+.+...+-.++
T Consensus 17 ~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (199)
T 3qbm_A 17 AALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFR 92 (199)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 3455566754 79999999999999999887776667777777777666665555544444455555444443333
No 181
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=41.81 E-value=42 Score=27.09 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..|++|+|+.+||+..+|.++..
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 3567999999999999999988754
No 182
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=41.75 E-value=46 Score=25.22 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
.+..|+.|+|+.+||+..+|.++..-
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34579999999999999999887653
No 183
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=41.59 E-value=25 Score=32.33 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=24.2
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 363 KGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
-.+-|+..|+|+.+|+|..+|++++...
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L 53 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELL 53 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456799999999999999999998763
No 184
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=41.44 E-value=38 Score=27.93 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 444444 44445556 457999999999999999955
No 185
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=41.32 E-value=23 Score=32.67 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+-||..|+|+.+|+|..||++++...
T Consensus 31 ~~lPse~~La~~~~vSr~tvr~Al~~L 57 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIRRAVDLL 57 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455799999999999999999998764
No 186
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.31 E-value=22 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+|++..+|.+.+.-
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3469999999999999999887653
No 187
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=40.97 E-value=5.7 Score=37.30 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCCCchHHHHHHhc--CChHHHHHHhhhh
Q 014852 226 DHKLRLKERLGCEPSMEQLAASLR--ISRPELQSILMEC 262 (417)
Q Consensus 226 ~~~~~l~~~lg~eps~~e~A~~~~--~s~~eLr~~l~~~ 262 (417)
.+...|...+|++|+.+|+|..+| +|.+.++..+...
T Consensus 201 ~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~a 239 (245)
T 3ugo_A 201 RTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIA 239 (245)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 344567788999999999999999 9999988776554
No 188
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=40.83 E-value=28 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 353 I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+++..|...+..++..+||+.||++..+|..++.+..
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555565556678999999999999999999988754
No 189
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=40.21 E-value=18 Score=26.26 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=20.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|+.|+|+.+||+..+|.+...-
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 358999999999999999988653
No 190
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=40.12 E-value=28 Score=32.79 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+-||..|+|+.+|+|..||++++...
T Consensus 51 ~~lPse~~La~~~~vSr~tvr~Al~~L 77 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVL 77 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 466799999999999999999998764
No 191
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=40.04 E-value=33 Score=32.29 Aligned_cols=42 Identities=5% Similarity=0.052 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 350 ~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+.+....+..|...+...+..|||+.+|++..+|..++....
T Consensus 29 l~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~ 70 (275)
T 3mq0_A 29 LRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMT 70 (275)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444445555556668999999999999999999987653
No 192
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=39.88 E-value=43 Score=29.22 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|.+.+...+
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4999999999999999999988755
No 193
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=39.81 E-value=24 Score=26.58 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~rar 391 (417)
|+.++|+.||++..+|...+...+
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r 38 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcC
Confidence 999999999999999999986654
No 194
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.75 E-value=18 Score=25.40 Aligned_cols=24 Identities=4% Similarity=0.075 Sum_probs=20.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|+.++|+.+|++..+|.+...-
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 358999999999999999887653
No 195
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.71 E-value=53 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHH-HHHHHHcCCCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~gRepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.|-..|.++||+..||+.+++..
T Consensus 16 ~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~ 51 (196)
T 2qwt_A 16 ARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHH
Confidence 344444 44456666678999999999999999965
No 196
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=39.60 E-value=23 Score=30.86 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=31.3
Q ss_pred HcCCCccHHHHHHHcC---CCHHHHHHHHHHhCcccccc
Q 014852 362 EKGVTPSVDRIAEYLN---MSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 362 e~gRepS~eEIAe~LG---IS~etVr~aL~rark~LSLD 397 (417)
..++..|.+|||+.|+ ++..||+..+.+.++++..+
T Consensus 160 ~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 160 NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Confidence 3466789999999999 99999999999999887653
No 197
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=39.55 E-value=22 Score=26.44 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.7
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHh
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~ra 390 (417)
|+.++|+.+||+..+|.+....-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHCC
Confidence 89999999999999999987653
No 198
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=39.48 E-value=46 Score=27.76 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..+||+.||++..+|..++....
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 357999999999999999999988754
No 199
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=39.40 E-value=1.6e+02 Score=24.22 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=51.9
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHH
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAi 306 (417)
|-...|- ..|..++|+.+|+|...+..--..-++.+..++..+...+............+..+.+...+-.+++.+
T Consensus 26 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (203)
T 3f1b_A 26 VFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEGFLGFV 102 (203)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4455664 489999999999999999888776667777777777666665555554455555555555544444433
No 200
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=39.15 E-value=33 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L~ 68 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVLE 68 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36999999999999999999887654
No 201
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=38.92 E-value=43 Score=30.65 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014852 343 PNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (417)
Q Consensus 343 p~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rark 392 (417)
|....|+-....++ |. .|-..++.++|+.+|||...|..++..++-
T Consensus 23 plS~yErg~~y~r~---L~-~g~~~~Q~~lA~~~giS~a~VSR~L~~A~L 68 (189)
T 3mky_B 23 PTSAYERGQRYASR---LQ-NEFAGNISALADAENISRKIITRCINTAKL 68 (189)
T ss_dssp CCCHHHHHHHHHHH---HH-TTTTTCHHHHHHHHTSCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHH---Hh-cCcccCHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 44555554444443 32 255569999999999999999999988863
No 202
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=38.73 E-value=24 Score=27.79 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=21.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.|+|+.+||+..+|.++..-
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4569999999999999999988654
No 203
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=38.67 E-value=19 Score=31.74 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
-.|..|+|+.|||+..+|++.++..+
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G~ 56 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGH 56 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCCC
Confidence 35999999999999999999987643
No 204
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.49 E-value=20 Score=26.04 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=18.6
Q ss_pred cHHHHHHHcCCCHHHHHHHH
Q 014852 368 SVDRIAEYLNMSQKKVRNAT 387 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL 387 (417)
|+.++|+.|||+..+|.+..
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999998875
No 205
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=38.15 E-value=60 Score=29.20 Aligned_cols=31 Identities=6% Similarity=0.201 Sum_probs=23.4
Q ss_pred HHHHHHcCCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|.+ ...++.+|+|+.+|+|+.||+.=+.
T Consensus 18 ~~~l~~-~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 18 RQQIDS-NPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHH-CCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 333444 3457999999999999999987543
No 206
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=37.88 E-value=46 Score=26.17 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=27.0
Q ss_pred HHHHcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+.+.+...+.+.+|+.+|++++.|...+...
T Consensus 23 ~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~m 54 (84)
T 1ufm_A 23 SASKLYNNITFEELGALLEIPAAKAEKIASQM 54 (84)
T ss_dssp HHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHH
Confidence 45556788899999999999999999887654
No 207
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.80 E-value=51 Score=27.66 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=25.9
Q ss_pred HHHHH-HHHHHHHcCCCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRN-AKLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~-a~~~L~e~gRepS~eEIAe~LGIS~etVr~ 385 (417)
.+|.. +..-+.+.|-..|..+||+..||+.+++..
T Consensus 18 ~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~ 53 (194)
T 2q24_A 18 DKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYR 53 (194)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHH
Confidence 34444 444456666559999999999999999965
No 208
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=37.65 E-value=28 Score=26.51 Aligned_cols=28 Identities=7% Similarity=0.079 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+...+..|||+.+|++..+|...+....
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4457999999999999999999887654
No 209
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=37.49 E-value=1.5e+02 Score=24.11 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=48.5
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhh-hHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHH
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILME-CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~-~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAi 306 (417)
++-...|-+ .|..++|+.+|+|...+...-.. -++-+..++..+..-+............+..+-+...+-.+++.+
T Consensus 17 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (191)
T 1sgm_A 17 RLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQF 95 (191)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Confidence 344556654 79999999999999999888775 666677777766655554444433333344454444444444433
No 210
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=37.21 E-value=94 Score=26.74 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~ 203 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLG 203 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4899999999999999999988765
No 211
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=36.93 E-value=21 Score=33.86 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=22.9
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 363 KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
..+.+|+++||+..|+|..||..+++.
T Consensus 6 ~~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 6 KQQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp -CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 356789999999999999999888753
No 212
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.92 E-value=54 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-cCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 353 IRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 353 I~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+.++..-+.. ....+++++||+.+|++..++......
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444445543 345679999999999999998877654
No 213
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.76 E-value=24 Score=25.38 Aligned_cols=24 Identities=4% Similarity=0.075 Sum_probs=20.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|+.++|+.+|++..+|.+...-
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 358999999999999999887653
No 214
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=36.74 E-value=32 Score=26.40 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCC-CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 354 RNAKLRLEEKGV-TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 354 ~~a~~~L~e~gR-epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|.+.|- ..+.+|||+.||++.+.|..++++..
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 444556665554 34899999999999999999988764
No 215
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=36.62 E-value=1.7e+02 Score=23.71 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=50.6
Q ss_pred HHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHH
Q 014852 229 LRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (417)
Q Consensus 229 ~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikA 305 (417)
.++-...|-. .|..++|+.+|+|...+..--..-++-+..++......+............+..|.+...+..+++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (188)
T 3qkx_A 18 DRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYF 95 (188)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 3455556755 8999999999999999888777666667777776666665555554444445555555444444433
No 216
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.58 E-value=39 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHH
Q 014852 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 353 I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~ 385 (417)
+..+..-+.+.| ..|..+||+.+||+..++..
T Consensus 17 l~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 17 AEAALELVDRDG-DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHH
Confidence 444555557789 99999999999999999954
No 217
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=36.49 E-value=28 Score=25.63 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=22.6
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
-.+.+|+|+.||++..||...+....
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~ 35 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGD 35 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 35899999999999999999887653
No 218
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=36.47 E-value=37 Score=27.52 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=25.3
Q ss_pred HHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|...+ .+..|||+.+|++..+|...+.+..
T Consensus 46 ~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 46 LLSEES--LTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp HHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344334 8999999999999999999887754
No 219
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=36.32 E-value=25 Score=25.90 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~ 388 (417)
..|++++|+.+||+..+|.++..
T Consensus 15 glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 45999999999999999988754
No 220
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=36.23 E-value=71 Score=27.75 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.3
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+|.++||..+|++.++|...+...+
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~ 188 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLI 188 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4999999999999999999887654
No 221
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=35.76 E-value=29 Score=30.75 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=38.4
Q ss_pred HHHHHHhhccccccCccH---HHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 329 VSRALVENSRTLRLPNHL---HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 329 i~~~Ird~~r~irlp~~~---~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+........+|-.. .....++.+++...+ .|+..|+.+||+.+|.+...|-.++.+
T Consensus 49 l~~Yf~G~~~~f~lpl~~~g~t~fq~~V~~~l~~IP-~G~~~tYg~iA~~~g~p~RaVG~A~~~ 111 (156)
T 1wrj_A 49 LDLYFEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIK-WGEVRTYKQVADAVKTSPRAVGTALSK 111 (156)
T ss_dssp HHHHTTTCCCCCCCCBCCTTSCHHHHHHHHHHTTSC-TTCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCeeecCCCCCHHHHHHHHHHhCCC-CCceEcHHHHHHHhCCCccHHHHHHHh
Confidence 334554443334445443 334556666665554 599999999999999998666666553
No 222
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.74 E-value=68 Score=26.91 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred ccCccHHHHHHHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 341 RLPNHLHERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 341 rlp~~~~e~~~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
+......+...+|..+...| .+.| ...|.++||+..||+.+++...
T Consensus 11 ~~~~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 11 KRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHh
No 223
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=35.68 E-value=43 Score=27.66 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.||++..+|...+.+..
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le 83 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLE 83 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999887754
No 224
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.62 E-value=68 Score=26.93 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 350 LGLIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 350 ~~kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+|..+... +.+.| ...|+++||+..||+.+++..
T Consensus 14 r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~ 51 (192)
T 2fq4_A 14 QKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYK 51 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHH
Confidence 3445555444 45656 567999999999999999955
No 225
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=35.58 E-value=69 Score=27.27 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999999887754
No 226
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=35.54 E-value=13 Score=33.55 Aligned_cols=60 Identities=20% Similarity=0.118 Sum_probs=38.4
Q ss_pred HHHHHHhh-----ccccccCccHHHHHHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 329 VSRALVEN-----SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 329 i~~~Ird~-----~r~irlp~~~~e~~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+... .....+|-.......++.+++...+ .|+..|+.+||+.+|.+...|-.++.+
T Consensus 55 l~~Yf~G~~~~~~~~~f~lpl~~t~Fq~~Vw~~l~~IP-~G~t~TYg~iA~~~G~p~RaVG~Al~~ 119 (167)
T 2g7h_A 55 LKLYFAEIDDKKVRELISYKLEVPEFTKKVLDIVKDIE-FGKTLTYGDIAKKLNTSPRAVGMALKR 119 (167)
T ss_dssp HHHHTTCCCSCCTTTTCCBCSCCSSCCHHHHHHHTTCC-TTCCEEHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHCCCCccccccccCcccccHHHHHHHHHHhcCCC-CCCEeeHHHHHHHhCCCHHHHHHHHHh
Confidence 44455544 3334455444333355666655544 599999999999999997666666654
No 227
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=35.45 E-value=37 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..|++|+|+.+||+..+|.++..
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3457999999999999999988765
No 228
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=35.35 E-value=1.2e+02 Score=24.06 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47999999999999999999887754
No 229
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.24 E-value=28 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=22.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..+||+.+||+..||...+.+.+
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4899999999999999999887753
No 230
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=35.04 E-value=1.9e+02 Score=23.71 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhH
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 298 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG 298 (417)
++-...|-. .|.+++|+.+|+|...+..--..-.+.+..+++.+..-+............+..+.+...
T Consensus 22 ~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (196)
T 3he0_A 22 QLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYRTM 91 (196)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHHHH
T ss_pred HHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 344556754 899999999999999888777666666677776666655555444443333444444333
No 231
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=34.73 E-value=65 Score=26.47 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=25.4
Q ss_pred HHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 352 LIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 352 kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+|..+ ..-+.+.| ...|+++||+..||+..++..
T Consensus 13 ~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 48 (195)
T 3ppb_A 13 AILETALQLFVSQGFHGTSTATIAREAGVATGTLFH 48 (195)
T ss_dssp HHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 34444 44446666 567999999999999999965
No 232
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=34.62 E-value=99 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999999988765
No 233
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=34.59 E-value=73 Score=26.06 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 350 ~~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+|..+...| .+.| ...|+.+||+..||+.+++..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (188)
T 3qkx_A 10 AEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYL 47 (188)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHH
Confidence 34455554444 5666 457999999999999999955
No 234
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.52 E-value=31 Score=30.56 Aligned_cols=28 Identities=11% Similarity=0.161 Sum_probs=22.0
Q ss_pred HHcCCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 361 EEKGVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 361 ~e~gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..++..|+.|||+.|||+..|+.+...
T Consensus 43 p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 43 SNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp ---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3345567999999999999999988655
No 235
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.49 E-value=61 Score=26.13 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..+||+.||++..||...+.+..
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred CCHHHHHHHHCcCHHHHHHHHHccc
Confidence 4899999999999999999987653
No 236
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.49 E-value=17 Score=34.20 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=21.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
.+.+|+++||+..|+|..||..+++.
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 45689999999999999999988753
No 237
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=34.48 E-value=46 Score=25.23 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L~ 55 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVLE 55 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46999999999999999999988754
No 238
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=34.37 E-value=1e+02 Score=25.47 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=52.2
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhh
Q 014852 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (417)
Q Consensus 231 l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAier 308 (417)
+-...|.. .|..++|+.+|+|...+..--..-++-+..++..+..-+............+..+.+...+..++..+..
T Consensus 23 lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (204)
T 3eup_A 23 VFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGS 101 (204)
T ss_dssp HHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGT
T ss_pred HHHHcCcccCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 33444543 6899999999999998887777666677777777766666555554444556666666655555554443
No 239
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=34.23 E-value=91 Score=25.15 Aligned_cols=26 Identities=0% Similarity=0.070 Sum_probs=19.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~ 76 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELE 76 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57999999999999999998887654
No 240
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.22 E-value=33 Score=26.61 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|+.+||+.+||+..+|...+....
T Consensus 24 ~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 24 ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 5899999999999999999887654
No 241
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=34.21 E-value=2e+02 Score=23.81 Aligned_cols=78 Identities=4% Similarity=-0.030 Sum_probs=55.4
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCC-CChhhhhhhHHHHHHHHHhh
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLVQGGLIGLLRGIEK 308 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g-~e~EDLIQEG~IgLikAier 308 (417)
+-...|- ..|..++|+.+|+|...+...-..-++.+..++..+...+........... .+..+.+...+..+++.+..
T Consensus 28 lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 107 (213)
T 2qtq_A 28 IMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKLRRHISKCIDTYYD 107 (213)
T ss_dssp HHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4444565 489999999999999999988877777778888777776666655555444 56666666666666655543
No 242
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=34.16 E-value=54 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..|+.|+|+.+||+..+|..++.
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456888888888888888887764
No 243
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=34.01 E-value=1.1e+02 Score=25.61 Aligned_cols=70 Identities=16% Similarity=0.028 Sum_probs=41.5
Q ss_pred hC-CCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHH
Q 014852 235 LG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (417)
Q Consensus 235 lg-~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLik 304 (417)
.| ...|..++|+.+|+|...+..--..-++-+..+++.+...+............+..+.+...+..+++
T Consensus 41 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (212)
T 3nxc_A 41 DGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLG 111 (212)
T ss_dssp -----CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 35 35899999999999998888777666666666666665555544444333333444444444433333
No 244
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=33.97 E-value=48 Score=27.10 Aligned_cols=27 Identities=4% Similarity=0.118 Sum_probs=17.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...++.|||+.+|++..+|-..+.+..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~ 82 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLE 82 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 457999999999999999998887654
No 245
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=33.88 E-value=94 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..+++.|||+.+|++..+|..++....
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le 55 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFE 55 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3447999999999999999999887654
No 246
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=33.73 E-value=53 Score=27.44 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 353 IRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 353 I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+..+..-+.+.| ...|.++||+..||+.+++..
T Consensus 13 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 46 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGTTLDDISKSVNIKKASLYY 46 (192)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHH
Confidence 444455556666 457999999999999999965
No 247
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=33.70 E-value=68 Score=26.69 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=26.4
Q ss_pred HHHHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 349 RLGLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 349 ~~~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
...+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 12 KRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHH
Confidence 33445444 44445666 468999999999999999944
No 248
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=33.63 E-value=28 Score=31.38 Aligned_cols=27 Identities=11% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.+-|+..|+|+.+|||..+|++++...
T Consensus 29 ~~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 455699999999999999999998864
No 249
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=33.61 E-value=83 Score=26.33 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=20.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...++.|||+.+|++..+|-..+.+.-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 567999999999999999998887653
No 250
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=33.59 E-value=37 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|||+.+|++..+|...+....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~ 61 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLR 61 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 356999999999999999999887654
No 251
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=33.49 E-value=1.5e+02 Score=23.81 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 37999999999999999999887754
No 252
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=33.42 E-value=50 Score=28.08 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=19.0
Q ss_pred ccHHHHHHHcCCCHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ 388 (417)
.|+.|||+.+|+|..||...-+
T Consensus 76 ~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 76 YTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp CCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 5999999999999999976543
No 253
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=33.37 E-value=96 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLK 202 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4999999999999999999887654
No 254
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=33.32 E-value=1.3e+02 Score=24.54 Aligned_cols=76 Identities=14% Similarity=0.013 Sum_probs=49.1
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHH
Q 014852 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (417)
Q Consensus 231 l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAi 306 (417)
+-...|-. .|.+++|+.+|+|...+..--..-++.+..++..+..-+............+..+.+...+..+++.+
T Consensus 20 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (195)
T 3pas_A 20 EVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIG 96 (195)
T ss_dssp HHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44445543 78999999999999998887776666777777766655554444433344555555555544444443
No 255
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=33.12 E-value=78 Score=26.52 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=25.8
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 17 QHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 444444 44445666 468999999999999999965
No 256
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=33.00 E-value=55 Score=26.75 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH-cCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 352 LIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 352 kI~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
.+.++..-+.. ....+++++||+.+|++..++......
T Consensus 12 ~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 12 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35555555643 345689999999999999999776654
No 257
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=32.91 E-value=47 Score=30.08 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+-|+..+||+.+|||...|++++....
T Consensus 26 ~~LpsE~~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 26 DHLPSERALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456889999999999999999998754
No 258
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=32.89 E-value=77 Score=26.28 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
.+|..+...| .+.| ...|+.+||+..||+.+++...
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
Confidence 4455554444 5666 4689999999999999999653
No 259
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=32.86 E-value=22 Score=27.08 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..|+.++|+.+|++..+|.+++.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3457999999999999999998754
No 260
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=32.82 E-value=25 Score=30.08 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+|.++||..||++.++|...+...+
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4899999999999999999988765
No 261
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=32.71 E-value=84 Score=28.43 Aligned_cols=42 Identities=33% Similarity=0.384 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 350 ~~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+.+++..+.+.+..++..+||+.||++..+|..++.+..
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556666665445555679999999999999999887654
No 262
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.62 E-value=1.8e+02 Score=23.87 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhhc
Q 014852 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (417)
Q Consensus 237 ~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAierF 309 (417)
...|.+++|+.+|+|...+..--..-++-+..+++.+...+............+..+ .+..++...-.+
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 99 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDA----ALRRVVESQLDL 99 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHH----HHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHhhc
Confidence 668999999999999999988877766777777777766665555444333333333 333444444444
No 263
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=32.61 E-value=21 Score=30.42 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|.++||..||++.++|-+++.+
T Consensus 168 ~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 168 RVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp ------------------------
T ss_pred HCCHHHHHHHhCCCHHHHHHHHHh
Confidence 458999999999999999887654
No 264
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.60 E-value=43 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHcC-CCccHHHHHHHcCCCHHHHHHHHHHhC--cccccc
Q 014852 361 EEKG-VTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLD 397 (417)
Q Consensus 361 ~e~g-RepS~eEIAe~LGIS~etVr~aL~rar--k~LSLD 397 (417)
.+.| ..||.++||+.||+++.+|.+.+...- ..+.+.
T Consensus 45 ~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 45 LEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3344 458999999999999999999988754 355553
No 265
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=32.55 E-value=1.9e+02 Score=23.46 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=51.6
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHH--HHHHHHccCCCCChhhhhhhHHHHHHHHHh
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLV--MSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV--~sIA~Ry~~~g~e~EDLIQEG~IgLikAie 307 (417)
+-...|- ..|.+++|..+|+|...+..--..-++-+..++..+..-+ ............+..+-+...+..+++.+.
T Consensus 22 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (196)
T 3col_A 22 IILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSL 101 (196)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 3444565 4899999999999999888777766666777777766655 544444444445556666665555555554
Q ss_pred h
Q 014852 308 K 308 (417)
Q Consensus 308 r 308 (417)
.
T Consensus 102 ~ 102 (196)
T 3col_A 102 A 102 (196)
T ss_dssp H
T ss_pred c
Confidence 3
No 266
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.52 E-value=1.6e+02 Score=22.33 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=25.7
Q ss_pred CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHH
Q 014852 239 PSMEQLAASLRISRPELQSILMECSLAREKLVM 271 (417)
Q Consensus 239 ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe 271 (417)
-+..|+|..+|+|...++..+......+...+.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999888776665554443
No 267
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=32.50 E-value=1.5e+02 Score=24.42 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHH
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikA 305 (417)
++-...|.. .|..++|+.+|+|...+..--..-++.+..++..+...+............+..+-+...+..+++.
T Consensus 27 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (211)
T 3him_A 27 EVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLMSTVTAYVTW 103 (211)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 344556755 7999999999998888777766666677777777666666555555444455555454444444443
No 268
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=32.38 E-value=34 Score=30.30 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=30.0
Q ss_pred HcCCCccHHHHHHHc-----CCCHHHHHHHHHHhCcccccc
Q 014852 362 EKGVTPSVDRIAEYL-----NMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 362 e~gRepS~eEIAe~L-----GIS~etVr~aL~rark~LSLD 397 (417)
..++..|.+|||+.| +++..||+..+.+.++++...
T Consensus 168 ~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 168 KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 356778999999999 999999999999998877553
No 269
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=32.38 E-value=60 Score=25.87 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=11.5
Q ss_pred ccHHHHHHHcCCCHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~a 386 (417)
.|++|+|+.+||+..+|.++
T Consensus 35 ltq~elA~~~gis~~~is~~ 54 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVSAV 54 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 45566666666665555554
No 270
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=32.25 E-value=41 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHcCCCccHHHHHHHc--CCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGVTPSVDRIAEYL--NMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~L--GIS~etVr~aL~rar 391 (417)
+..|...| ..|..|||+.+ |++..+|.+++....
T Consensus 19 L~~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le 54 (111)
T 3b73_A 19 LEIIHEEG-NGSPKELEDRDEIRISKSSVSRRLKKLA 54 (111)
T ss_dssp HHHHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34454445 46999999999 999999999987643
No 271
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=32.24 E-value=60 Score=26.82 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.0
Q ss_pred HHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 352 LIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 352 kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+|.++ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 34444 44445555 567999999999999999955
No 272
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=32.15 E-value=34 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 014852 368 SVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~r 389 (417)
++.++|+.|||+..+|.+.+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999888654
No 273
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=32.13 E-value=1.2e+02 Score=25.14 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...|+.|||+.+|++..+|-..+.+.-
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 346999999999999999988887654
No 274
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=32.11 E-value=38 Score=29.50 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=31.2
Q ss_pred HcCCCccHHHHHHHc-----CCCHHHHHHHHHHhCcccccc
Q 014852 362 EKGVTPSVDRIAEYL-----NMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 362 e~gRepS~eEIAe~L-----GIS~etVr~aL~rark~LSLD 397 (417)
..++..|.+|||+.| +++..||+..+.+.++++...
T Consensus 171 ~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 171 NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 356678999999999 999999999999999887653
No 275
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=31.98 E-value=65 Score=27.28 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=23.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGK 392 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark 392 (417)
..++.|+|...|+|+.+|.+++.+.++
T Consensus 92 G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 458999999999999999999977654
No 276
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=31.98 E-value=1.9e+02 Score=23.43 Aligned_cols=80 Identities=14% Similarity=-0.027 Sum_probs=52.1
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHhh
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAier 308 (417)
++-...|-+ .|.+++|+.+|+|...+..--..-++.+..++..+..-+............+..+.+...+..+++.+..
T Consensus 19 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (194)
T 2g7s_A 19 TLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIAD 98 (194)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcc
Confidence 344456644 7999999999999999888777666677777776665555444443333345556666655555555544
Q ss_pred c
Q 014852 309 F 309 (417)
Q Consensus 309 F 309 (417)
.
T Consensus 99 ~ 99 (194)
T 2g7s_A 99 A 99 (194)
T ss_dssp C
T ss_pred C
Confidence 3
No 277
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=31.97 E-value=81 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+...| .+.| ...|+++||+..||+.+++..
T Consensus 12 ~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~ 48 (204)
T 3anp_C 12 ERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFN 48 (204)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHH
Confidence 4455554444 5555 457999999999999999955
No 278
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=31.94 E-value=24 Score=26.09 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=21.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|++|+|+.+||+..+|.+...-
T Consensus 24 gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 24 SLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHcC
Confidence 469999999999999999988653
No 279
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.84 E-value=68 Score=27.35 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 353 I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
+..+..-+.+.|...|+++||+..||+..++...
T Consensus 26 l~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~ 59 (215)
T 2hku_A 26 FTAATELFLEHGEGVPITQICAAAGAHPNQVTYY 59 (215)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHH
Confidence 4444555566775579999999999999999653
No 280
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=31.69 E-value=1.7e+02 Score=25.79 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.8
Q ss_pred ccHHHHHHHcCCCHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..+||+.||++..+|..++.
T Consensus 176 ~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 176 QAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHh
Confidence 5899999999999999998764
No 281
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=31.62 E-value=66 Score=27.46 Aligned_cols=25 Identities=8% Similarity=0.002 Sum_probs=21.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..|||+.+|++..+|...+.+..
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~Le 111 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVRLL 111 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7999999999999999987776643
No 282
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=31.60 E-value=84 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 347 ~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
.+...+|..+...| +.-....|+.+||+..||+.+++...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhh
No 283
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=31.54 E-value=2.3e+02 Score=23.70 Aligned_cols=73 Identities=10% Similarity=0.031 Sum_probs=45.5
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHH
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 302 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgL 302 (417)
+|-..-|-. .|.+++|+.+|+|...+..--..-++-+..+++.+..-+..........+.+..+-+...+..+
T Consensus 25 ~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (204)
T 2ibd_A 25 TLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEALVTTS 98 (204)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 455566755 7999999999999998887776666667777766655554443333323334444443333333
No 284
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=31.52 E-value=93 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHH-HHHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRN-AKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~-a~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
.+|.. +..-+.+.| ...|.++||+..||+.+++...
T Consensus 11 ~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 11 DQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
Confidence 34444 444456666 5679999999999999999653
No 285
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=31.51 E-value=56 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHHHH-HHHHHHcCCCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~gRepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.|-..|.++||+..||+.+++..
T Consensus 19 ~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~ 54 (199)
T 2rek_A 19 DRIIEAAAAEVARHGADASLEEIARRAGVGSATLHR 54 (199)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHH
Confidence 444444 44445544467999999999999999955
No 286
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.48 E-value=76 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=26.0
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ..+|+++||+..||+..++..
T Consensus 34 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 34 TQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHH
Confidence 344444 44456666 458999999999999999965
No 287
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=31.42 E-value=2.5e+02 Score=24.13 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=52.3
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccC--CCCChhhhhhhHHHHHHHHHh
Q 014852 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN--MGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 231 l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~--~g~e~EDLIQEG~IgLikAie 307 (417)
+-..-|.+ .|..++|+.+|+|...+..--..-++.+..+++.+...+......... ...+..+.+...+..+++.+.
T Consensus 55 l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (229)
T 3bni_A 55 LLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRGALDTVLDEYLAMKR 134 (229)
T ss_dssp HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 44455655 899999999999999988877766667777777766555544443322 344566666666666666655
Q ss_pred h
Q 014852 308 K 308 (417)
Q Consensus 308 r 308 (417)
.
T Consensus 135 ~ 135 (229)
T 3bni_A 135 T 135 (229)
T ss_dssp H
T ss_pred h
Confidence 4
No 288
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=31.33 E-value=94 Score=25.05 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~rar 391 (417)
++.|||+.+|++..+|...+.+..
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le 75 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLE 75 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHH
Confidence 999999999999999999887654
No 289
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=31.30 E-value=2.3e+02 Score=23.62 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHH
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAi 306 (417)
++-...|.. .|..++|..+|+|...+..--..-++-+..+++.+...+............+..+.+..-+-.++..+
T Consensus 22 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 99 (216)
T 3f0c_A 22 KRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKLRSLHF 99 (216)
T ss_dssp HHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 344556754 89999999999999998887777667777777777666655555544444466665555544444433
No 290
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=30.85 E-value=61 Score=26.82 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=25.5
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a~~~-L~e~gRepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+... +.+. ...|.++||+..||+.+++..
T Consensus 17 ~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~Y~ 51 (190)
T 2v57_A 17 RAILDAAMLVLADH-PTAALGDIAAAAGVGRSTVHR 51 (190)
T ss_dssp HHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHH
Confidence 444444444 4555 778999999999999999955
No 291
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=30.77 E-value=90 Score=25.97 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 349 RLGLIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 349 ~~~kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
...+|..+... +.+.| ...|..+||+..||+.+++..
T Consensus 13 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 13 RRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 33445554444 46666 468999999999999999965
No 292
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=30.76 E-value=1.3e+02 Score=26.56 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.7
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|..++...+
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 4999999999999999999988765
No 293
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=30.35 E-value=30 Score=29.78 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+|+++||..+|++.++|...+...+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999999887754
No 294
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=30.33 E-value=39 Score=26.34 Aligned_cols=24 Identities=4% Similarity=0.158 Sum_probs=20.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|++|+|+.+||+..+|.++..
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 346999999999999999988865
No 295
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=30.33 E-value=52 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L~ 59 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNALQ 59 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999887653
No 296
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=30.16 E-value=59 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 350 ~~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+|..+...| .+.| ...|+.+||+..||+.+++..
T Consensus 14 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 14 KVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 34555555555 4555 467999999999999999843
No 297
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.96 E-value=95 Score=26.98 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 349 ~~~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
...+|..+...| .+.| ...|+++||+..||+.+++..
T Consensus 44 ~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 44 RLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 344555554444 5556 457999999999999999955
No 298
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=29.75 E-value=2.2e+02 Score=24.61 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=51.0
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCC-C-CChhhhhhhHHHHHHHHHh
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM-G-ADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~-g-~e~EDLIQEG~IgLikAie 307 (417)
|-...|. ..|..++|+.+|++...+..--..-++.+..++..+...+.......... + .+..+.+...+..+++.+.
T Consensus 56 lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (236)
T 3q0w_A 56 LLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFG 135 (236)
T ss_dssp HHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 3444554 47899999999999999988877666777777777766666555554322 2 3555555555555544443
No 299
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.65 E-value=1.4e+02 Score=24.17 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=28.5
Q ss_pred CCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHH
Q 014852 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMS 272 (417)
Q Consensus 237 ~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~ 272 (417)
..-+..|+|..+|+|...++..+......+...+..
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999888776666555544
No 300
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=29.56 E-value=39 Score=25.80 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=21.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|+.++|+.+||+..+|.+++..
T Consensus 21 gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 358999999999999999988764
No 301
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=29.55 E-value=63 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.6
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 39 ~~~~~ela~~l~is~stvs~~L~~L~ 64 (106)
T 1r1u_A 39 EASVGHISHQLNLSQSNVSHQLKLLK 64 (106)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35999999999999999999887654
No 302
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=29.54 E-value=76 Score=26.93 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred cccccCccHHHHHHHHHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 338 RTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 338 r~irlp~~~~e~~~kI~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
|....|.....+..-+..+..-+.+.| ...|..+||+..||+.+++...
T Consensus 14 r~~~r~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 14 RGRGRRPAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
No 303
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=29.40 E-value=31 Score=29.57 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4899999999999999999988765
No 304
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=29.28 E-value=1.9e+02 Score=24.12 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+.+..
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57999999999999999999887754
No 305
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=29.18 E-value=72 Score=24.96 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCchHHHHHHhcCChHHHHHHhhh
Q 014852 227 HKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (417)
Q Consensus 227 ~~~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~ 261 (417)
+..-+.+.+..+++.+++|..+|+|...|.+..+.
T Consensus 7 ~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 7 VEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33445667777899999999999999887766654
No 306
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.01 E-value=1.1e+02 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=20.9
Q ss_pred chHHHHHHhcCChHHHHHHhhhhHHH
Q 014852 240 SMEQLAASLRISRPELQSILMECSLA 265 (417)
Q Consensus 240 s~~e~A~~~~~s~~eLr~~l~~~~~A 265 (417)
+..++|..+|+|...++..+......
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 58899999999999888776665443
No 307
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=28.99 E-value=64 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=26.1
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++...
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 13 EKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHh
Confidence 344444 44445666 4579999999999999999653
No 308
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=28.94 E-value=1.6e+02 Score=26.10 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|+.|||+.+|++..+|-.++.+.-
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47999999999999999988887653
No 309
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=28.89 E-value=85 Score=25.89 Aligned_cols=35 Identities=6% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 344444 44445666 557999999999999999944
No 310
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=28.78 E-value=59 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|||+.+|++..+|...+....
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~ 63 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALK 63 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999999999999887654
No 311
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=28.76 E-value=37 Score=28.88 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=23.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+|.+|||+.+|+|...|++++...+
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~ 53 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLR 53 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999988754
No 312
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=28.73 E-value=2.4e+02 Score=22.98 Aligned_cols=66 Identities=6% Similarity=-0.110 Sum_probs=44.0
Q ss_pred HHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhh
Q 014852 229 LRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294 (417)
Q Consensus 229 ~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDL 294 (417)
.++-...|-. .|.+++|+.+|+|...+..--..-++.+..++..+...+............+..+.
T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (194)
T 3bqz_B 12 KELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREK 78 (194)
T ss_dssp HHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHH
T ss_pred HHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 3444556644 89999999999999999888776666777777776665555444443333333333
No 313
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.50 E-value=2e+02 Score=25.23 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=49.5
Q ss_pred hhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccC-CC-CChhhhhhhHHHHHHHHHh
Q 014852 234 RLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN-MG-ADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 234 ~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~-~g-~e~EDLIQEG~IgLikAie 307 (417)
..|. ..+..++|+.+|++...|..--..-.+.+..+++.+...+......... .+ .+..+.+...+..++..+.
T Consensus 58 ~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (255)
T 3g1o_A 58 DRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFG 134 (255)
T ss_dssp TSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 4454 4789999999999999998887766677777777766666555544432 22 3566666555555555443
No 314
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=28.46 E-value=1.2e+02 Score=25.11 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=48.8
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHh
Q 014852 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 231 l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAie 307 (417)
+-...|.. .|..++|+.+|+|...+...-..-++.+..++..+...+............+..+.+...+..++..+.
T Consensus 32 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (203)
T 3mnl_A 32 IASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRAMQ 109 (203)
T ss_dssp HHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHCCCGGGTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 33444543 789999999999999998877776667777777666555444333333344555555555544444443
No 315
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=28.45 E-value=44 Score=26.91 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.|+|+.+||+..+|.++..-
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3469999999999999999887653
No 316
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=28.43 E-value=1.3e+02 Score=24.83 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH-HHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 349 RLGLIRNAKLR-LEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 349 ~~~kI~~a~~~-L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
...+|..+... +.+.|- ..|..+||+..||+.+++..
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 18 RKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 33445555444 466664 47999999999999999955
No 317
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=28.39 E-value=45 Score=28.32 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
++.++.+|||+.+|+|...|++++...+
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~ 55 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLK 55 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456999999999999999999987654
No 318
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=28.28 E-value=61 Score=26.53 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 351 ~kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
..+..+...+.+ ....++++||+.+|++...+....+..
T Consensus 79 ~~l~~a~~~i~~-~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 79 DKITHACRLLEQ-ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp HHHHHHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345566555544 556799999999999988888876554
No 319
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=28.23 E-value=84 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.||++..+|...+....
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le 70 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLR 70 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46999999999999999999887654
No 320
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.22 E-value=41 Score=27.96 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..+||+.+||+..+|...+.+.+
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5899999999999999999987754
No 321
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=28.19 E-value=95 Score=25.60 Aligned_cols=34 Identities=29% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 352 LIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 352 kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+|.++ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~ 41 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYF 41 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHH
Confidence 34444 44445656 457999999999999999954
No 322
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.00 E-value=1e+02 Score=26.07 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 350 LGLIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 350 ~~kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+|..+... +.+.| ...|.++||+..||+.+++..
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 53 (204)
T 2ibd_A 16 RTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYH 53 (204)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHH
Confidence 3445554444 45656 457999999999999999954
No 323
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.93 E-value=88 Score=24.78 Aligned_cols=27 Identities=4% Similarity=-0.034 Sum_probs=23.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+++.|||+.++++..+|-.++.+.-
T Consensus 35 ~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp TCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 324
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=27.82 E-value=61 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=25.0
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 363 KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+..+|.+|||+.||+|..+|++.+...+
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~ 44 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLR 44 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35568999999999999999999887654
No 325
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=27.81 E-value=96 Score=25.79 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=23.9
Q ss_pred HHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 354 RNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 354 ~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+..-+.+.| ...|.++||+..||+.+++..
T Consensus 10 ~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~ 42 (190)
T 3vpr_A 10 EEAAKLFTEKGYEATSVQDLAQALGLSKAALYH 42 (190)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 34444445666 457999999999999999954
No 326
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=27.74 E-value=41 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHH-HHHHHHcCC-CccHHHHHHHcCCCHHHHH
Q 014852 351 GLIRNA-KLRLEEKGV-TPSVDRIAEYLNMSQKKVR 384 (417)
Q Consensus 351 ~kI~~a-~~~L~e~gR-epS~eEIAe~LGIS~etVr 384 (417)
.+|.++ ..-+.+.|- ..|+++||+..||+.+++.
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 344444 444466664 4799999999999998883
No 327
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=27.73 E-value=36 Score=29.87 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=22.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|-..+...+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~ 203 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLK 203 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHG
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3899999999999999999988765
No 328
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=27.71 E-value=43 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH---cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 352 LIRNAKLRLEE---KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 352 kI~~a~~~L~e---~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+.+++.-|.. .+...+..|||+.+|++..+|..++....
T Consensus 12 s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~ 54 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ 54 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455444543 23457999999999999999999987643
No 329
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=27.64 E-value=1.1e+02 Score=26.08 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 15 ~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~ 51 (211)
T 3bhq_A 15 REIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYK 51 (211)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 344444 44446666 457999999999999999955
No 330
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=27.62 E-value=76 Score=26.21 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 353 IRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 353 I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+..+..-+.+.| ...|+++||+..||+.+++..
T Consensus 17 l~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 50 (196)
T 3he0_A 17 LAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHH
Confidence 344444445656 558999999999999999943
No 331
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.51 E-value=1.2e+02 Score=27.26 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~ 242 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLE 242 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4899999999999999999988765
No 332
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=27.50 E-value=41 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=30.1
Q ss_pred HcCCCccHHHHHHHcC-----CCHHHHHHHHHHhCccccc
Q 014852 362 EKGVTPSVDRIAEYLN-----MSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 362 e~gRepS~eEIAe~LG-----IS~etVr~aL~rark~LSL 396 (417)
..++..|.+|||+.++ ++..||+..+.+.++++..
T Consensus 166 ~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 166 NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 3466689999999998 9999999999999887754
No 333
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.42 E-value=81 Score=25.39 Aligned_cols=25 Identities=4% Similarity=0.193 Sum_probs=19.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+||+..+|.++..-
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4468899999999999988877643
No 334
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=27.28 E-value=95 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHH
Q 014852 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 353 I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~ 385 (417)
+..+..-+.+.|-..|.++||+..||+.+++..
T Consensus 15 l~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~ 47 (190)
T 3jsj_A 15 LEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQ 47 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhCccccHHHHHHHhCCCHHHHHH
Confidence 344444455555449999999999999999955
No 335
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=27.22 E-value=47 Score=25.86 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=21.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.++|+.+||+..+|.+...-
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3469999999999999999888664
No 336
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=27.19 E-value=37 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|+.++|+.+||+..+|.+...-
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 459999999999999999987653
No 337
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.18 E-value=98 Score=26.04 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 347 ~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
.+...+|..+...| ..-....|..+||+..||+.+++...
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 11 DEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHH
No 338
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.10 E-value=48 Score=23.51 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHh
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~ra 390 (417)
++.++|+.||++..+|...+...
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 89999999999999999987543
No 339
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=27.09 E-value=53 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=24.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCcc
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIGKV 393 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rark~ 393 (417)
+.+..|||+.+|++..+|...+....+.
T Consensus 41 ~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 41 ALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4699999999999999999999887654
No 340
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=27.01 E-value=91 Score=26.31 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=25.5
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~ 50 (212)
T 2ras_A 14 ARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSR 50 (212)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHH
Confidence 445444 44445556 568999999999999999943
No 341
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=26.96 E-value=1.1e+02 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 347 ~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
.+...+|..+...| ..-....|.++||+..||+.+++...
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
No 342
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=26.93 E-value=41 Score=28.08 Aligned_cols=29 Identities=10% Similarity=0.230 Sum_probs=17.0
Q ss_pred HHHHHHHHcCC-Cc---cHHHHHHHcCCCHHHH
Q 014852 355 NAKLRLEEKGV-TP---SVDRIAEYLNMSQKKV 383 (417)
Q Consensus 355 ~a~~~L~e~gR-ep---S~eEIAe~LGIS~etV 383 (417)
..+..++.-.+ .| +...||+.+||+.+..
T Consensus 44 s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl 76 (123)
T 3qwg_A 44 PYLSQLRSGNRTNPSGATMAALANFFRIKAAYF 76 (123)
T ss_dssp HHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 34444443233 45 4677788888876655
No 343
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=26.91 E-value=63 Score=25.59 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHhhh
Q 014852 230 RLKERLGCEPSMEQLAASLRISRPELQSILME 261 (417)
Q Consensus 230 ~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~ 261 (417)
-+.+.+..+++.+++|..+|+|...|.+....
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 15 LMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44556667799999999999999888776654
No 344
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=26.82 E-value=48 Score=23.50 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHh
Q 014852 369 VDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 369 ~eEIAe~LGIS~etVr~aL~ra 390 (417)
+.+||..+||+..+|...+...
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999998876543
No 345
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=26.77 E-value=36 Score=29.58 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=22.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|...+...+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4899999999999999999988765
No 346
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=26.71 E-value=67 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|..|||+.+|+|..+|...+.+..
T Consensus 33 ~~s~~eLA~~lglS~stv~~~l~~Le 58 (192)
T 1uly_A 33 EMTISQLSEILGKTPQTIYHHIEKLK 58 (192)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999887654
No 347
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=26.65 E-value=38 Score=29.98 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=26.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rark~LSLD 397 (417)
.+..+||+.||+|..+|+..+..+.+++.+.
T Consensus 214 ~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~ 244 (258)
T 3p7n_A 214 LRNKEVAARLGLSEKTVKMHRGLVMEKLNLK 244 (258)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999999998887766543
No 348
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=26.61 E-value=38 Score=29.48 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+|.++||..+|++.++|...+...+
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5999999999999999999988765
No 349
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.57 E-value=1e+02 Score=26.03 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=26.4
Q ss_pred HHHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 350 LGLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 350 ~~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 32 r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 32 HQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 3444444 44446666 467999999999999999955
No 350
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.52 E-value=71 Score=26.35 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=24.6
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVR 384 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr 384 (417)
.+|..+ ..-+.+.| ...|..+||+..||+.+++.
T Consensus 13 ~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY 48 (197)
T 3rd3_A 13 QHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFY 48 (197)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHH
Confidence 344444 44445556 45799999999999999983
No 351
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=26.50 E-value=1e+02 Score=25.95 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred cccccCccHHHHHHHHHHHHHHH-HHcCCC-ccHHHHHHHcCCCHHHHHHH
Q 014852 338 RTLRLPNHLHERLGLIRNAKLRL-EEKGVT-PSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 338 r~irlp~~~~e~~~kI~~a~~~L-~e~gRe-pS~eEIAe~LGIS~etVr~a 386 (417)
+....+..-.+...+|..+...| .+.|-. .|..+||+..||+.+++...
T Consensus 7 ~~~~r~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 7 SRVGRPSGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
No 352
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.49 E-value=94 Score=26.27 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+...| .+.| ...|.++||+..||+.+++..
T Consensus 15 ~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~ 51 (205)
T 1rkt_A 15 AEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYL 51 (205)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhh
Confidence 4455554444 5566 467999999999999999943
No 353
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=26.25 E-value=2.8e+02 Score=23.05 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 014852 227 HKLRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQ 282 (417)
Q Consensus 227 ~~~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~ 282 (417)
+..+|-...|-. .|.+++|+.+|+|...+..--..-++-+..+++.+...+.....
T Consensus 17 aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~~~~~~~~~~~~~~ 73 (204)
T 3anp_C 17 AAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVR 73 (204)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566765 89999999999999998887776667777777776665554444
No 354
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=26.24 E-value=66 Score=25.54 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=15.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ 388 (417)
.|+.++|+.+||+..+|.++..
T Consensus 42 lsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 42 VTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHC
Confidence 4777777777777777766643
No 355
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=26.20 E-value=88 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCchHHHHHHhcCChHHHHHHhhh
Q 014852 227 HKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (417)
Q Consensus 227 ~~~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~ 261 (417)
+..-+.+.+..+++.+++|..+|+|...|.+....
T Consensus 10 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 10 VLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33445666777899999999999999888876654
No 356
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=26.20 E-value=2.8e+02 Score=23.07 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=39.1
Q ss_pred HHHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Q 014852 228 KLRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (417)
Q Consensus 228 ~~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA 281 (417)
..++-...|-. .|.+++|+.+|+|...+..--..-++-+..+++.+...+....
T Consensus 16 A~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av~~~~~~~~~~~~ 70 (197)
T 2gen_A 16 ALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALL 70 (197)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33455567764 7899999999999999888777666677777776665544433
No 357
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=26.03 E-value=2.8e+02 Score=22.96 Aligned_cols=78 Identities=12% Similarity=0.122 Sum_probs=54.3
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHcc-CCCCChhhhhhhHHHHHHHHHh
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYD-NMGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~-~~g~e~EDLIQEG~IgLikAie 307 (417)
++-...|-. .|..++|+.+|+|...+...-..-++.+..+++.+...+........ ....+..+.+...+..++..+.
T Consensus 21 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (216)
T 3s5r_A 21 TLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCE 100 (216)
T ss_dssp HHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTTCCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 344556755 89999999999999999988877777788888887777766665554 3344555555555555544443
No 358
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=26.01 E-value=42 Score=25.56 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.7
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~r 389 (417)
.++.|+|+.+|||..+++.....
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh
Confidence 48899999999999999988765
No 359
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=26.01 E-value=90 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=23.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|||+.||++..+|...+....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~ 81 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLY 81 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456999999999999999999887653
No 360
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=25.75 E-value=53 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+... +.+.| ...|+++||+..||+.+++..
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 13 VKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 344444444 45555 357999999999999999944
No 361
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=25.75 E-value=38 Score=29.88 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.|.++||..+|++.++|-..+...+
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQ 211 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHH
Confidence 4899999999999999999988765
No 362
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.66 E-value=1.3e+02 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.5
Q ss_pred HhhCCCCchHHHHHHhcCChHHHHHHh
Q 014852 233 ERLGCEPSMEQLAASLRISRPELQSIL 259 (417)
Q Consensus 233 ~~lg~eps~~e~A~~~~~s~~eLr~~l 259 (417)
+..|.+|+..|+|+.+|++...+.+.+
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 357889999999999999976655433
No 363
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=25.64 E-value=50 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=20.2
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|+.++|+.+||+..+|.+...
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 346999999999999999987643
No 364
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.61 E-value=92 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHhhCC-CCchHHHHHHhcCChHHHHHHhhh
Q 014852 229 LRLKERLGC-EPSMEQLAASLRISRPELQSILME 261 (417)
Q Consensus 229 ~~l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~ 261 (417)
.-+++.+.. +++.+++|..+|+|...|.+..+.
T Consensus 9 ~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 9 NIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345556666 789999999999999988876664
No 365
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=25.58 E-value=2.2e+02 Score=23.82 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 014852 229 LRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (417)
Q Consensus 229 ~~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~s 279 (417)
.++-...|...|.+++|+.+|+|...+...-..-++.+..++..+...+..
T Consensus 23 ~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~ 73 (196)
T 2qwt_A 23 YDTFAAEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIVD 73 (196)
T ss_dssp HHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345556676789999999999999988877766556666666655544433
No 366
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=25.56 E-value=47 Score=29.01 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..+|.+|||+.+|+|...|++++...+
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil~~L~ 69 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLIGPLR 69 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457999999999999999999987654
No 367
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=25.43 E-value=56 Score=26.88 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=24.9
Q ss_pred HHHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+... +.+.| ...|+++||+..||+.+++..
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (195)
T 3pas_A 11 IAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYI 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHH
Confidence 344444444 45545 457999999999999999965
No 368
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=25.43 E-value=76 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|.++||+.+|++..+|.+.+....
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~ 77 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLD 77 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHc
Confidence 35999999999999999999877653
No 369
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.42 E-value=86 Score=27.07 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|++++|+.+||+..+|.++..
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456899999999999999887654
No 370
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=25.40 E-value=1.3e+02 Score=25.31 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 347 ~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
.+...+|..+...| ..-....|.++||+..||+.+++...
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 9 DERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHh
No 371
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=25.27 E-value=1.1e+02 Score=25.41 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=25.9
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
.+|..+ ..-+.+.| ...|..+||+..||+.+++...
T Consensus 19 ~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 19 DLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHh
Confidence 344444 44445555 4679999999999999999653
No 372
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=25.17 E-value=1.1e+02 Score=25.25 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred HHHHHHHH-HHHHHHcCC-CccHHHHHHHcCCCHHHHHHH
Q 014852 349 RLGLIRNA-KLRLEEKGV-TPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 349 ~~~kI~~a-~~~L~e~gR-epS~eEIAe~LGIS~etVr~a 386 (417)
...+|..+ ..-+.+.|- ..|.++||+..||+.+++...
T Consensus 18 ~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 18 VRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHH
Confidence 34445444 444456664 579999999999999999653
No 373
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=25.11 E-value=1.1e+02 Score=25.82 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=0.0
Q ss_pred cCccHHHHHHHHHHHHHHHHHcC-CCccHHHHHHHcCCCHHHH
Q 014852 342 LPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKV 383 (417)
Q Consensus 342 lp~~~~e~~~kI~~a~~~L~e~g-RepS~eEIAe~LGIS~etV 383 (417)
.......+..-+..|..-+.+.| ...|.++||+..||+.+++
T Consensus 4 ~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 46 (203)
T 3cdl_A 4 MRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTV 46 (203)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHH
No 374
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.01 E-value=89 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCC-CccHHHHHHHcCCCHHHHHHH
Q 014852 349 RLGLIRNAKLRLEEKGV-TPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 349 ~~~kI~~a~~~L~e~gR-epS~eEIAe~LGIS~etVr~a 386 (417)
+..-+..+..-+.+.|- ..|.++||+..||+.+++...
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (206)
T 3dew_A 10 RSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYH 48 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHH
No 375
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=25.00 E-value=48 Score=26.17 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.8
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.++.+||..+||+..+|.+......
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3899999999999999999887653
No 376
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=24.95 E-value=1.1e+02 Score=25.78 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 350 LGLIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 350 ~~kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
..+|.++... +.+.| ...|.++||+..||+.+++..
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~ 53 (199)
T 3crj_A 16 TEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHY 53 (199)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhh
Confidence 3445555444 45666 567999999999999999943
No 377
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=24.90 E-value=56 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=16.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~ 388 (417)
+..|+.++|+.+||+..+|..+..
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345777777777777777776654
No 378
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=24.87 E-value=72 Score=27.42 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.6
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 014852 368 SVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~r 389 (417)
|+.|+|+.+|++..+|.+.+..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8888888888888888777653
No 379
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=24.85 E-value=50 Score=30.21 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|...+..+||+.+|||..+|+.++....
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~ 74 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLE 74 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455999999999999999999988753
No 380
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=24.85 E-value=92 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+...|--..+..+|+.+|++.++|..++++..
T Consensus 18 yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe 50 (59)
T 2xvc_A 18 YIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALK 50 (59)
T ss_dssp HHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344456667999999999999999999998764
No 381
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=24.80 E-value=1.1e+02 Score=24.33 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~ 388 (417)
.+..|+.++|+.+||+..+|.++..
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4567999999999999999988754
No 382
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=24.75 E-value=95 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
.+|..+ ..-+.+.| ...|+++||+..||+.+++...
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (216)
T 3s5r_A 13 ELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYY 50 (216)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHH
Confidence 334444 44445666 5589999999999999999653
No 383
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=24.63 E-value=80 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+...+..|||+.+|++..+|...+....
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 3457999999999999999988877653
No 384
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.61 E-value=2.7e+02 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHh
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~ra 390 (417)
...+.|+.|||+..++...+...
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 57899999999999998887653
No 385
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=24.57 E-value=3.1e+02 Score=22.87 Aligned_cols=66 Identities=5% Similarity=0.012 Sum_probs=42.2
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhh
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLI 295 (417)
++-..-|-. .|.+++|+.+|+|...+..--..-++-+..+++.+..-+............+..+.+
T Consensus 21 ~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (197)
T 2f07_A 21 EVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDFWTVL 87 (197)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHH
T ss_pred HHHHHhCcccCCHHHHHHHhCCCchHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 355566755 789999999999988888766655556666666665555544444433333333333
No 386
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=24.57 E-value=1.1e+02 Score=25.49 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred cccccCccHHHHHHHHHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 338 RTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 338 r~irlp~~~~e~~~kI~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
+.-+-+.....+..-+..+..-+.+.| ...|..+||+..||+..++...
T Consensus 17 ~~~~~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 17 RKPKQERSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
No 387
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=24.56 E-value=2.8e+02 Score=23.09 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=40.2
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhh
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQ 296 (417)
+|-..-|-. .|.+++|+.+|+|...+..--..-++-+..+++.+...+............+..+-+.
T Consensus 25 ~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (203)
T 3ccy_A 25 AMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFL 92 (203)
T ss_dssp HHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 344556654 7899999999998877776655555556666666555444443333333334444333
No 388
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.48 E-value=3e+02 Score=23.14 Aligned_cols=49 Identities=10% Similarity=-0.066 Sum_probs=35.1
Q ss_pred HHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 014852 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (417)
Q Consensus 231 l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~s 279 (417)
+-...|...|.+++|+.+|+|...+...-..-++-+..++..+...+..
T Consensus 32 lf~~~G~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~ 80 (215)
T 2hku_A 32 LFLEHGEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGK 80 (215)
T ss_dssp HHHHHCTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3344554589999999999999998887766666666666665554443
No 389
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.47 E-value=2.8e+02 Score=22.39 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=46.2
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCC-CChhhhh
Q 014852 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLV 295 (417)
Q Consensus 231 l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g-~e~EDLI 295 (417)
+-...|.. .|..++|+.+|+|...+...-..-++-+..+++.+...+..........+ .+..+.+
T Consensus 22 l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (191)
T 3on4_A 22 LIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKI 88 (191)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HHHHhCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHH
Confidence 44455654 89999999999999999988877777777788777766666655554444 4444433
No 390
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.43 E-value=3.2e+02 Score=23.01 Aligned_cols=66 Identities=6% Similarity=0.002 Sum_probs=43.3
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhh
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLI 295 (417)
++-..-|-. .|.+++|+.+|+|...+..--..-++-+..+++.+...+............+..+-+
T Consensus 19 ~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (206)
T 1vi0_A 19 EVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKL 85 (206)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHhCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 344556754 799999999999999988877766666777777665555444444333333333333
No 391
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=24.41 E-value=71 Score=26.48 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=9.5
Q ss_pred HHHHHHHcCCCHHHHHH
Q 014852 369 VDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 369 ~eEIAe~LGIS~etVr~ 385 (417)
...||+.||++.+.+-.
T Consensus 54 l~~ia~~L~v~~~~l~~ 70 (130)
T 3fym_A 54 IRKYASVVNIEPNQLIQ 70 (130)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 45566666666555543
No 392
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=24.35 E-value=69 Score=29.20 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|...+..+||+.+|||...|++++....
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~ 76 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILI 76 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445999999999999999999998753
No 393
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.14 E-value=1.2e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 353 IRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 353 I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
+..+..-+.+.| ...|.++||+..||+.+++...
T Consensus 14 l~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~ 48 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 344444445555 4679999999999999999653
No 394
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=24.09 E-value=59 Score=27.48 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|+.|+|+.+||+..+|.++..-
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4469999999999999999988754
No 395
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=24.00 E-value=90 Score=26.19 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=25.5
Q ss_pred HHHHHH-HHHHHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.|- ..|.++||+..||+.+++..
T Consensus 11 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 47 (199)
T 2o7t_A 11 EHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHH
Confidence 444444 444466654 46999999999999999965
No 396
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=23.98 E-value=49 Score=27.99 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=8.9
Q ss_pred HHHHHHHcCCCHHHH
Q 014852 369 VDRIAEYLNMSQKKV 383 (417)
Q Consensus 369 ~eEIAe~LGIS~etV 383 (417)
...||+.+||+.+..
T Consensus 64 l~~iA~~f~V~~~yl 78 (135)
T 3r1f_A 64 MAALANFFRIKAAYF 78 (135)
T ss_dssp HHHHHHHHTSCTHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 456666666665544
No 397
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=23.98 E-value=2.9e+02 Score=23.04 Aligned_cols=77 Identities=13% Similarity=-0.001 Sum_probs=47.4
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHHh
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAie 307 (417)
++-...|-. .|..++|+.+|+|...+...-..-.+-+..++..+...+....... ....+..+-+...+..++..+.
T Consensus 14 ~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 91 (212)
T 3rh2_A 14 ELFNEHGERTITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFDQYEQHLLLGFKPY-ADQKVDLELLMSYFDAMFYTMW 91 (212)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCC-SSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh-cccCCcHHHHHHHHHHHHHHHH
Confidence 344556655 8999999999999999888776666667777766665554443333 2223333444444444444433
No 398
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=23.96 E-value=2.1e+02 Score=24.99 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhh
Q 014852 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297 (417)
Q Consensus 231 l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQE 297 (417)
|-...|. ..|..++|+.+|+|...+..--..-++.+..+++.+...+............+..+.+..
T Consensus 58 lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (245)
T 3aqt_A 58 LMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAEDAFESVGIALDQVLTKLDDPAEVFAG 125 (245)
T ss_dssp HHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHH
T ss_pred HHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 4444564 478999999999998888877666666667777666655554444443323333343333
No 399
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=23.88 E-value=92 Score=24.32 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHhhC-CCCchHHHHHHhcCChHHHHHHhhh
Q 014852 228 KLRLKERLG-CEPSMEQLAASLRISRPELQSILME 261 (417)
Q Consensus 228 ~~~l~~~lg-~eps~~e~A~~~~~s~~eLr~~l~~ 261 (417)
..-+.+.+. .+++.+++|..+|+|...|.+....
T Consensus 9 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 9 CQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334556666 7899999999999999988876654
No 400
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=23.85 E-value=67 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|+++||+..||+.+++..
T Consensus 31 ~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 31 AALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 444444 44446666 457999999999999999855
No 401
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=23.85 E-value=66 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHH-HHHH-HHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ...| .+.| ...|..+||+..||+.+++..
T Consensus 27 ~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 64 (212)
T 3nxc_A 27 EEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYR 64 (212)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHH
Confidence 344444 5546 4445 668999999999999999844
No 402
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=23.81 E-value=1.3e+02 Score=25.16 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 353 IRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 353 I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
+..+..-+.+.| ...|+++||+..||+.+++...
T Consensus 23 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 23 STVGIELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhh
Confidence 344444455666 4579999999999999999764
No 403
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=23.72 E-value=1.2e+02 Score=26.46 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=26.0
Q ss_pred HHHHHH-HHHHHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.|- ..|.++||+..||+..++..
T Consensus 47 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~ 83 (236)
T 3q0w_A 47 LAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (236)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHH
Confidence 344444 444566664 67999999999999999955
No 404
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.71 E-value=54 Score=26.98 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=24.4
Q ss_pred HHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 352 LIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 352 kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 10 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 45 (191)
T 1sgm_A 10 KILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHH
Confidence 34444 44445556 457999999999999888854
No 405
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=23.68 E-value=1.1e+02 Score=27.72 Aligned_cols=40 Identities=35% Similarity=0.427 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 352 kI~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+.+++..|.+.+..++..+||+.||++..+|..++.+..
T Consensus 10 ~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le 49 (230)
T 1fx7_A 10 MYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRME 49 (230)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3445555554435444559999999999999999887653
No 406
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=23.65 E-value=50 Score=29.40 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|...+..+||+.+|||...|+.++.+..
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~ 60 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLA 60 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445999999999999999999998754
No 407
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=23.60 E-value=70 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
|...+..+||+.+|||...|+.++.+..
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~ 64 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLA 64 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444699999999999999999998754
No 408
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=23.52 E-value=1.2e+02 Score=25.38 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 353 IRNAKLRLEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 353 I~~a~~~L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
+..+..-+.+.|- ..|+.+||+..||+.+++..
T Consensus 17 l~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHH
Confidence 3444444566664 57999999999999999955
No 409
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=23.48 E-value=1e+02 Score=25.25 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=25.4
Q ss_pred HHHHHH-HHHHHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.|- ..|..+||+..||+.+++..
T Consensus 13 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 13 ERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 344444 444456664 47999999999999999955
No 410
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=23.42 E-value=81 Score=26.55 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=22.0
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~rar 391 (417)
|.+|||+.+|||...+++++...+
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~ 48 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLK 48 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999987755
No 411
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.41 E-value=99 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 347 ~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
.+...+|..+...| +.-....|.++||+..||+.+++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2xdn_A 10 QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHH
No 412
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=23.40 E-value=49 Score=30.78 Aligned_cols=41 Identities=5% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHc---CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 351 GLIRNAKLRLEEK---GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 351 ~kI~~a~~~L~e~---gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+.+++.-|.-. ....+..|||+.+|++..+|..++....
T Consensus 18 ~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~ 61 (265)
T 2ia2_A 18 QSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLV 61 (265)
T ss_dssp HHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455565555532 3456999999999999999999987543
No 413
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=23.40 E-value=1.2e+02 Score=25.87 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=25.8
Q ss_pred HHHHH-HHHHHHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRN-AKLRLEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~-a~~~L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
.+|.. |..-+.+.|- ..|.++||+..||+.+++..
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (210)
T 2wui_A 14 DGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYG 50 (210)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHH
Confidence 34444 4444566664 57999999999999999955
No 414
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.38 E-value=3.2e+02 Score=22.74 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=46.7
Q ss_pred HHHHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhh
Q 014852 227 HKLRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295 (417)
Q Consensus 227 ~~~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLI 295 (417)
+..++-...|-. .|.+++|+.+|+|...+..--..-++-+..+++.+..-+............+..+++
T Consensus 20 aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (205)
T 1rkt_A 20 AAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQSVWASIS 89 (205)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 334455667764 899999999999999988877766667777777766555444433333344555655
No 415
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=23.34 E-value=3.3e+02 Score=22.81 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Q 014852 229 LRLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (417)
Q Consensus 229 ~~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA 281 (417)
.++-...|-. .|.+++|+.+|+|...+..--..-++-+..+++.+...+....
T Consensus 22 ~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~~~~~~~~~~~~ 75 (211)
T 3bhq_A 22 TAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDII 75 (211)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455567765 8999999999999999888777666777777777665554433
No 416
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=23.31 E-value=96 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=20.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~r 389 (417)
+..|++|+|+.+|++..+|.++..-
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4568999999999999998877653
No 417
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=23.12 E-value=1.1e+02 Score=25.41 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCC-CccHHHHHHHcCCCHHHHHHH
Q 014852 353 IRNAKLRLEEKGV-TPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 353 I~~a~~~L~e~gR-epS~eEIAe~LGIS~etVr~a 386 (417)
+..+..-+.+.|- ..|+++||+..||+.+++...
T Consensus 13 l~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 13 KRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 3444444566664 479999999999999999765
No 418
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=23.11 E-value=3.1e+02 Score=22.71 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=49.2
Q ss_pred HHHHhhCCC-CchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccC-CCCChhhhhhhHHHHHH
Q 014852 230 RLKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN-MGADMADLVQGGLIGLL 303 (417)
Q Consensus 230 ~l~~~lg~e-ps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~-~g~e~EDLIQEG~IgLi 303 (417)
++-...|-. .|..++|..+|+|...+...-..-++-+..++..+...+......... ...+..+.+...+..++
T Consensus 24 ~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (217)
T 3nrg_A 24 DEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRWLLDVGI 99 (217)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHH
Confidence 344556655 899999999999998888777766677777777777666666665542 23334454444444333
No 419
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.08 E-value=75 Score=25.87 Aligned_cols=37 Identities=27% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-HHcCC-CccHHHHHHHcCCCHHHHHHH
Q 014852 350 LGLIRNAKLRL-EEKGV-TPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 350 ~~kI~~a~~~L-~e~gR-epS~eEIAe~LGIS~etVr~a 386 (417)
..+|..+...| .+.|- ..|..+||+..||+.+++...
T Consensus 6 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 6 SVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 34455554444 55554 479999999999999999653
No 420
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=23.01 E-value=57 Score=28.11 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.1
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.|++|+|+.+||+.++++..+.+-
T Consensus 96 dTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 499999999999999887766543
No 421
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=22.91 E-value=45 Score=30.95 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH---cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 351 GLIRNAKLRLEE---KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 351 ~kI~~a~~~L~e---~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+.+++.-|.- .....+..|||+.+|++..+|..++....
T Consensus 20 ~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~ 63 (260)
T 2o0y_A 20 RSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC 63 (260)
T ss_dssp HHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345555555543 23467999999999999999999987653
No 422
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=22.91 E-value=3.1e+02 Score=23.65 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=43.6
Q ss_pred HHHHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHHHH
Q 014852 229 LRLKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (417)
Q Consensus 229 ~~l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLikAi 306 (417)
.++-...|- ..+..++|+.+|++...+..--..-.+.+..+++.....+..........+.+..|-+...+...++.+
T Consensus 17 ~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (213)
T 3ni7_A 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHHLIMIWLDAL 95 (213)
T ss_dssp HHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 345556674 488999999999999988877665444455555444333322222111122344455544444444443
No 423
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=22.91 E-value=1.1e+02 Score=24.37 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
+.++.|+|+..||+..++..+.+-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 568999999999999999887543
No 424
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=22.86 E-value=1.3e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 353 IRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 353 I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
+..+..-+.+.| ...|.++||+..||+.+++..
T Consensus 13 l~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~ 46 (197)
T 2gen_A 13 LQAALACFSEHGVDATTIEMIRDRSGASIGSLYH 46 (197)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHH
Confidence 344444446666 467999999999999999955
No 425
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.63 E-value=1.5e+02 Score=25.66 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=26.2
Q ss_pred HHHHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 349 RLGLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 349 ~~~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
....|..+ ..-+.+.| ...|..+||+..||+..++..
T Consensus 17 ~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 17 VRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 33445444 44445656 457999999999999999844
No 426
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.53 E-value=49 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|+.++|+.+||+..+|.+.+.-
T Consensus 31 gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 31 DINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 469999999999999999987653
No 427
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=22.40 E-value=85 Score=24.29 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..+..|||+.+|++..+|...+....
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L~ 61 (102)
T 3pqk_A 36 EFSVGELEQQIGIGQPTLSQQLGVLR 61 (102)
T ss_dssp CBCHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999887653
No 428
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=22.39 E-value=1.4e+02 Score=26.15 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=0.0
Q ss_pred ccCccHHHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 341 RLPNHLHERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 341 rlp~~~~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
+.+.........|..+...| ..-....|..+||+..||+.+++...
T Consensus 16 ~~~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~ 63 (231)
T 2zcx_A 16 RSAQAKQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRY 63 (231)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
No 429
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.09 E-value=2.9e+02 Score=22.35 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=24.0
Q ss_pred chHHHHHHhcCChHHHHHHhhhhHHHHHHHH
Q 014852 240 SMEQLAASLRISRPELQSILMECSLAREKLV 270 (417)
Q Consensus 240 s~~e~A~~~~~s~~eLr~~l~~~~~Are~LI 270 (417)
+..|+|..+|+|...+...+......+...+
T Consensus 40 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 40 SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999888877665444433
No 430
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=22.05 E-value=1.1e+02 Score=25.97 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++...
T Consensus 18 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 18 NAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 344444 44445666 4579999999999999999654
No 431
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.99 E-value=67 Score=24.72 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=19.9
Q ss_pred CccHHHHHHHcCCCHHH----HHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKK----VRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~et----Vr~aL~r 389 (417)
..|+.|+|+.+|++..+ |.+...-
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 45999999999999999 7776543
No 432
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.98 E-value=19 Score=34.13 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 363 KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
-.+.+|+++||+..|+|..||..+++.
T Consensus 9 g~~~~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 9 GHRPVTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ---------------------------
T ss_pred CCCCCcHHHHHHHhCCCHHHHHHHHCC
Confidence 345689999999999999999998863
No 433
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.88 E-value=3.5e+02 Score=22.55 Aligned_cols=79 Identities=5% Similarity=-0.058 Sum_probs=53.4
Q ss_pred HHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCC-CCChhhhhhhHHHHHHHHHhhc
Q 014852 232 KERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM-GADMADLVQGGLIGLLRGIEKF 309 (417)
Q Consensus 232 ~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~-g~e~EDLIQEG~IgLikAierF 309 (417)
-...|- ..|..++|..+|+|...+..--..-.+.+..++..+...+.......... +.+..+-+...+..++..+..+
T Consensus 43 ~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 122 (222)
T 3bru_A 43 LTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARH 122 (222)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 334554 47899999999999999998877766777777777766665554444433 3355666666666666665554
Q ss_pred C
Q 014852 310 D 310 (417)
Q Consensus 310 D 310 (417)
.
T Consensus 123 ~ 123 (222)
T 3bru_A 123 G 123 (222)
T ss_dssp T
T ss_pred c
Confidence 4
No 434
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=21.67 E-value=1.5e+02 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 348 ERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 348 e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
+...+|..+...| +.-....|.++||+..||+.++|...
T Consensus 35 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~ 75 (221)
T 3g7r_A 35 EARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRH 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
No 435
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=21.50 E-value=84 Score=28.21 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH-HHHHcCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 348 ERLGLIRNAKL-RLEEKGVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 348 e~~~kI~~a~~-~L~e~gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
....++.+++. ..+ .|+..|+.+||+.+|.+...|-.++.+
T Consensus 91 ~Fq~~V~~~l~~~IP-~G~~~TYg~iA~~~G~p~RaVG~A~~~ 132 (174)
T 1mgt_A 91 PFEKKVYEWLTKNVK-RGSVITYGDLAKALNTSPRAVGGAMKR 132 (174)
T ss_dssp HHHHHHHHHHHHHSC-TTCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHccCC-CCceEeHHHHHHHhCCCHHHHHHHHHh
Confidence 34456677766 554 599999999999999997667666654
No 436
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=21.43 E-value=1.4e+02 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
..|..+ ..-+.+.| ...|+.+||+..||+..++...
T Consensus 10 ~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~ 47 (213)
T 3ni7_A 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 344444 44456677 5679999999999999998553
No 437
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=21.30 E-value=38 Score=29.52 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=29.3
Q ss_pred HcCCCccHHHHHHHcC-----CCHHHHHHHHHHhCccccc
Q 014852 362 EKGVTPSVDRIAEYLN-----MSQKKVRNATEAIGKVFSL 396 (417)
Q Consensus 362 e~gRepS~eEIAe~LG-----IS~etVr~aL~rark~LSL 396 (417)
..++..|.+|||+.|+ ++..||+..+.+.++++..
T Consensus 174 g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 174 HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 3567789999999998 9999999999999888754
No 438
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=21.26 E-value=1.1e+02 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 351 GLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 351 ~kI~~a~~~-L~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
..|..+... +.+.|-..|.++||+..||+..++...
T Consensus 15 ~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tiY~~ 51 (224)
T 1t33_A 15 SQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYY 51 (224)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHh
Confidence 445444444 455552399999999999999999553
No 439
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=21.26 E-value=94 Score=30.13 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=25.4
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 363 KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
.+...|-+|||+.||||..+|.+.++..+
T Consensus 16 ~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~ 44 (323)
T 3rkx_A 16 KPNYISGQSIAESLNISRTAVKKVIDQLK 44 (323)
T ss_dssp TTSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46678999999999999999999987765
No 440
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.10 E-value=1.3e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=26.3
Q ss_pred HHHcCCCccHHHHHHHc-----CCCHHHHHHHHHHhC
Q 014852 360 LEEKGVTPSVDRIAEYL-----NMSQKKVRNATEAIG 391 (417)
Q Consensus 360 L~e~gRepS~eEIAe~L-----GIS~etVr~aL~rar 391 (417)
|......+|.+||.+.| +++..||.+.+....
T Consensus 20 l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 20 LETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp HHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 44456678999999999 999999999887654
No 441
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=21.06 E-value=2.7e+02 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 014852 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (417)
Q Consensus 230 ~l~~~lg~eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~s 279 (417)
++-...|...|..++|+.+|+|...+..--..-++.+..++..+...+..
T Consensus 26 ~lf~~~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~ 75 (194)
T 2q24_A 26 RVFSEEGLDAHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCD 75 (194)
T ss_dssp HHHHHHCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34556676689999999999999888877766556666666655544443
No 442
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.95 E-value=88 Score=23.05 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.2
Q ss_pred cHHHHHHHcCCCHHHHHHHHH
Q 014852 368 SVDRIAEYLNMSQKKVRNATE 388 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~ 388 (417)
...+||+.||+++..|+....
T Consensus 32 ~r~~LA~~l~L~e~qVqvWFq 52 (64)
T 2e19_A 32 ELSKIADSVNLPLDVVKKWFE 52 (64)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCcChhhcCcchh
Confidence 567899999999999998753
No 443
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=20.95 E-value=1.1e+02 Score=27.37 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~r 389 (417)
....|++|+|+.|||+..+|.....-
T Consensus 101 ~~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 101 RNNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34569999999999999999887653
No 444
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=20.93 E-value=1.5e+02 Score=26.26 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-HHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 350 ~~kI~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
..+|..+...| .+.| ...|+.+||+..||+..++...
T Consensus 50 r~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~y 88 (260)
T 2of7_A 50 REAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHH
Confidence 34455554444 5555 4579999999999999999653
No 445
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=20.89 E-value=94 Score=25.52 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred cCccHHHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHH
Q 014852 342 LPNHLHERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKV 383 (417)
Q Consensus 342 lp~~~~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etV 383 (417)
+.........+|..+...| ..-....|.++||+..||+.+++
T Consensus 1 m~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tl 44 (180)
T 2fd5_A 1 MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGF 44 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGG
T ss_pred CCCccccCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHH
No 446
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.80 E-value=68 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.3
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~r 389 (417)
.++.|+|+.+|||..|++.....
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~ 25 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNI 25 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHC
Confidence 37899999999999999988664
No 447
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.79 E-value=55 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=19.9
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHh
Q 014852 368 SVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 368 S~eEIAe~LGIS~etVr~aL~ra 390 (417)
++.|+|+.||++.+++...+..+
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHHHc
Confidence 56899999999999998887754
No 448
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.76 E-value=2.8e+02 Score=22.31 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=24.5
Q ss_pred chHHHHHHhcCChHHHHHHhhhhHHHHHHHH
Q 014852 240 SMEQLAASLRISRPELQSILMECSLAREKLV 270 (417)
Q Consensus 240 s~~e~A~~~~~s~~eLr~~l~~~~~Are~LI 270 (417)
+..|+|..+|+|...+...+......+...+
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999888877666554444
No 449
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=20.67 E-value=43 Score=31.12 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHHHHc---CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 353 IRNAKLRLEEK---GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 353 I~~a~~~L~e~---gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+.+++.-|.-. ....+..|||+.+|++..+|..++....
T Consensus 5 l~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~ 46 (260)
T 3r4k_A 5 VSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ 46 (260)
T ss_dssp HHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555555432 3346999999999999999999987654
No 450
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=20.63 E-value=1.2e+02 Score=25.37 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 347 ~e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
......|..+...| +.-....|.++||+..||+.+++...
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 52 (197)
T 2hyt_A 11 EETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHH 52 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
No 451
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.63 E-value=1.3e+02 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.3
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 367 pS~eEIAe~LGIS~etVr~aL~ra 390 (417)
.|.++||+.+|++..+|.+.+...
T Consensus 135 ~t~~~iA~~lG~s~~~V~~~l~l~ 158 (230)
T 1vz0_A 135 LTQEEVARRVGKARSTVANALRLL 158 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 589999999999999999987665
No 452
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=20.57 E-value=1.4e+02 Score=25.71 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHcCCCccHHHHHHHcCCCHHHHHHH
Q 014852 348 ERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 348 e~~~kI~~a~~~L--~e~gRepS~eEIAe~LGIS~etVr~a 386 (417)
+...+|..+...| ..-....|.++||+..||+.+++...
T Consensus 9 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~ 49 (215)
T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFH 49 (215)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHhh
No 453
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.55 E-value=1.1e+02 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=25.3
Q ss_pred HHHHHH-HHHHHHcC-CCccHHHHHHHcCCCHHHHHH
Q 014852 351 GLIRNA-KLRLEEKG-VTPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 351 ~kI~~a-~~~L~e~g-RepS~eEIAe~LGIS~etVr~ 385 (417)
.+|..+ ..-+.+.| ...|.++||+..||+.+++..
T Consensus 11 ~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~ 47 (206)
T 1vi0_A 11 MQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYL 47 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHH
Confidence 344444 44445656 457999999999999999954
No 454
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=20.44 E-value=95 Score=24.93 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
...+..|||+.||++..+|...+....
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~ 56 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLE 56 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 446999999999999999998887643
No 455
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.38 E-value=3e+02 Score=22.90 Aligned_cols=74 Identities=14% Similarity=0.019 Sum_probs=46.2
Q ss_pred HHHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHH
Q 014852 230 RLKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303 (417)
Q Consensus 230 ~l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLi 303 (417)
++-...|- ..|.+++|+.+|+|...+..--..-++-+..++..+...+............+..+-+...+..++
T Consensus 22 ~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (212)
T 2ras_A 22 AIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLASDLPPRRKMYEFFARRF 96 (212)
T ss_dssp HHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34455664 489999999999999888877766666677777666555554444433233344444444443333
No 456
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=20.36 E-value=55 Score=28.53 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..+|.+|||+.+|||...|++++...+
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~ 53 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLH 53 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4557999999999999999999987654
No 457
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=20.36 E-value=70 Score=27.17 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHHHcCC-CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 357 KLRLEEKGV-TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 357 ~~~L~e~gR-epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
+..|.+.|- ..+.+|||+.+|++++.|..+++...
T Consensus 29 I~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ 64 (130)
T 2k9m_A 29 LNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 64 (130)
T ss_dssp TTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344444443 24899999999999999999988875
No 458
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.33 E-value=3.5e+02 Score=22.01 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=48.1
Q ss_pred HHHHhhCC-CCchHHHHHHhcCChHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHccCCCCChhhhhhhHHHHHHH
Q 014852 230 RLKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (417)
Q Consensus 230 ~l~~~lg~-eps~~e~A~~~~~s~~eLr~~l~~~~~Are~LIe~yl~LV~sIA~Ry~~~g~e~EDLIQEG~IgLik 304 (417)
++-...|. ..|.+++|+.+|+|...+...-..-.+.+..+++.+...+..........+.+..+.+...+-.++.
T Consensus 19 ~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (194)
T 3dpj_A 19 ELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGDSPRARIASFIDLMIM 94 (194)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 34445675 4799999999999999988877766666777777666655555444432334555554444433333
No 459
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.25 E-value=71 Score=26.44 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHHH-HHHcC-CCccHHHHHHHcCCCHHHHH
Q 014852 352 LIRNAKLR-LEEKG-VTPSVDRIAEYLNMSQKKVR 384 (417)
Q Consensus 352 kI~~a~~~-L~e~g-RepS~eEIAe~LGIS~etVr 384 (417)
+|..+... +.+.| ...|+.+||+..||+.+++.
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 41 (189)
T 3geu_A 7 KIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 34444333 44444 34799999999999999983
No 460
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.24 E-value=1.3e+02 Score=26.05 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=26.5
Q ss_pred HHHHHHHHH-HHHHcC-CCccHHHHHHHcCCCHHHHHHH
Q 014852 350 LGLIRNAKL-RLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (417)
Q Consensus 350 ~~kI~~a~~-~L~e~g-RepS~eEIAe~LGIS~etVr~a 386 (417)
..+|..+.. -+.+.| ...|+++||+..||+.+++...
T Consensus 42 r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 42 REAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 344544444 445556 4579999999999999999653
No 461
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=20.22 E-value=22 Score=32.98 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014852 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (417)
Q Consensus 360 L~e~gRepS~eEIAe~LGIS~etVr~aL~ra 390 (417)
+..-.+-|+..|+|+.+|+|..+|++++...
T Consensus 34 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L 64 (247)
T 2ra5_A 34 LTPGSLLGNEIELAARLGLSRPTVRQAIQSL 64 (247)
T ss_dssp -------------------------------
T ss_pred CCCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444566799999999999999999998754
No 462
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=20.06 E-value=1.2e+02 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~rar 391 (417)
..|..|||+.||++..+|.+.+....
T Consensus 166 ~~s~~eLA~~lglsksTv~r~L~~Le 191 (244)
T 2wte_A 166 GTGITELAKMLDKSEKTLINKIAELK 191 (244)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999887654
No 463
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=20.04 E-value=1.2e+02 Score=25.50 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=24.8
Q ss_pred HHHHH-HHHHHHcCC-CccHHHHHHHcCCCHHHHHH
Q 014852 352 LIRNA-KLRLEEKGV-TPSVDRIAEYLNMSQKKVRN 385 (417)
Q Consensus 352 kI~~a-~~~L~e~gR-epS~eEIAe~LGIS~etVr~ 385 (417)
+|..+ ..-+.+.|- ..|+.+||+..||+.+++..
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~ 42 (212)
T 3rh2_A 7 KIIQASLELFNEHGERTITTNHIAAHLDISPGNLYY 42 (212)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 34444 444455564 47999999999999999965
No 464
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.01 E-value=54 Score=26.82 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=21.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014852 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (417)
Q Consensus 366 epS~eEIAe~LGIS~etVr~aL~r 389 (417)
..|++|+|+.+|++..+|.+...-
T Consensus 84 glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 84 SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 469999999999999999988764
Done!