BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014854
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 75 MESLCETHNVIKDLIT----ELELPVSDWDEKWIDVYL-DISVNLL-----DICIAFSSV 124
M+ +CE ++++KD++ E+ DW++ +D +L +I+ N+L D +
Sbjct: 196 MQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKI 255
Query: 125 LTKVSQGHLLLQCVLHTLDSSSPTQ------FGRACSSLDNWREHISS--KNPRV----E 172
Q + L+ P F R SSL + R S K P+
Sbjct: 256 RDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDG 315
Query: 173 SCRSILDNLVASLDLPKVKNSAKGKVLMRAM---------YGVKVLTVFVCSIFAAAFSG 223
+S L+++ +L K+ + A+G +L+R YG L I + F G
Sbjct: 316 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLG 375
Query: 224 SAKNLLELN 232
K+ + N
Sbjct: 376 KIKDAFDRN 384
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 75 MESLCETHNVIKDLIT----ELELPVSDWDEKWIDVYL-DISVNLL-----DICIAFSSV 124
M+ +CE ++++KD++ E+ DW++ +D +L +I+ N+L D +
Sbjct: 217 MQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKI 276
Query: 125 LTKVSQGHLLLQCVLHTLDSSSPTQ------FGRACSSLDNWREHISS--KNPRV----E 172
Q + L+ P F R SSL + R S K P+
Sbjct: 277 RDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDG 336
Query: 173 SCRSILDNLVASLDLPKVKNSAKGKVLMR 201
+S L+++ +L K+ + A+G +L+R
Sbjct: 337 DKKSFLEDIRKALYASKIISYAQGFMLLR 365
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 26/160 (16%)
Query: 75 MESLCETHNVIKDLITELELPVSDWDEKWIDVYLD----------ISVNLLDICIAFSSV 124
M+ +CE ++++K L + +SD KW + LD + + +D +
Sbjct: 201 MQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKI 260
Query: 125 LTKVSQGHLLLQCVLHTLDSSSPTQ------FGRACSSLDNWREHISSKNP-------RV 171
+ Q ++ LD P F R S+L N R S P V
Sbjct: 261 MDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPKDAV 320
Query: 172 ESCRSILDNLVASLDLPKVKNSAKGKVLMR---AMYGVKV 208
+ +D+L +L K+ + A+G +L+R A YG K+
Sbjct: 321 KDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKL 360
>pdb|3GCG|B Chain B, Crystal Structure Of Map And Cdc42 Complex
Length = 172
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 96 VSDWDEKWIDVYLDISVN--LLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRA 153
W ++ Y+ +VN L D C + +SV++K ++GH + + V + L P A
Sbjct: 40 TQQWFQQEQTTYISRTVNRTLDDYCRSNNSVISKETKGH-IFRAVENAL--QQPLDMNGA 96
Query: 154 CSSLDNWREHISSKNPRV-ESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKV 208
SS+ ++ + N +V E C +D + K+ ++ R G KV
Sbjct: 97 QSSIGHFLQSNKYFNQKVDEQCGKRVDPITRFNTQTKMIEQVSQEIFERNFSGFKV 152
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 255 RNILSSGRATVL--NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQG 312
R I+ RA L + ++A+ L E I +E+D +EEE+L++ + +R L +
Sbjct: 161 RGIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRN 220
Query: 313 LDHLTKAV 320
L L K +
Sbjct: 221 LVELRKTI 228
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 255 RNILSSGRATVL--NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQG 312
R I+ RA L + ++A+ L E I +E+D +EEE+L++ + +R L +
Sbjct: 170 RGIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRN 229
Query: 313 LDHLTKAV 320
L L K +
Sbjct: 230 LVELRKTI 237
>pdb|3PAF|A Chain A, M. Jannaschii L7ae Mutant
pdb|3PAF|B Chain B, M. Jannaschii L7ae Mutant
Length = 117
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVD-GFFKIVLSGRD 332
E +QK +LD +A + +G + +TKAV+ G K+V+ D
Sbjct: 11 EEIQKELLDAVAKAQQIKKGANEVTKAVERGIAKLVIIAED 51
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 259 SSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLG 303
+SG+ T++N+++ S K + + V+T E+ + +V D+G
Sbjct: 27 NSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMG 71
>pdb|1RA4|A Chain A, Crystal Structure Of The Methanococcus Jannaschii L7ae
Protein
pdb|1XBI|A Chain A, High Resolution Structure Of Methanocaldococcus Jannaschii
L7ae
Length = 120
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVD-GFFKIVLSGRD 332
E +QK +LD +A + +G + +TKAV+ G K+V+ D
Sbjct: 14 EEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAED 54
>pdb|1SDS|A Chain A, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|B Chain B, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|C Chain C, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
Length = 117
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVD-GFFKIVLSGRD 332
E +QK +LD +A + +G + +TKAV+ G K+V+ D
Sbjct: 11 EEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAED 51
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 166 SKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSA 225
+KNP E +LD ++ LD+P ++ KG +++A G IFA S
Sbjct: 503 NKNPGFEIIHGLLDRIMQLLDVPPGED--KGGYVIKASEGPAFFPGRCAEIFARGQSVGK 560
Query: 226 KNLLELNVSDTLPWAPAFSALQANVN 251
+L +V S+L+ N+
Sbjct: 561 LGVLHPDVITKFELTMPCSSLEINIG 586
>pdb|2BBH|A Chain A, X-Ray Structure Of T.Maritima Cora Soluble Domain
Length = 269
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 255 RNILSSGRATVL--NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQG 312
R I+ RA L + ++A+ L E I +E+D +EEE+L++ + +R L +
Sbjct: 161 RGIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRN 220
Query: 313 LDHLTKAV 320
L L K +
Sbjct: 221 LVELRKTI 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,613,993
Number of Sequences: 62578
Number of extensions: 447864
Number of successful extensions: 1221
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 15
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)