Query 014854
Match_columns 417
No_of_seqs 141 out of 293
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05633 DUF793: Protein of un 100.0 1.9E-66 4.1E-71 522.0 35.2 321 18-338 6-389 (389)
2 PF03087 DUF241: Arabidopsis p 100.0 2.3E-31 5E-36 255.0 22.2 224 74-337 2-231 (231)
3 PF05055 DUF677: Protein of un 99.9 6.1E-26 1.3E-30 227.3 20.8 296 43-338 1-336 (336)
4 PHA01750 hypothetical protein 75.2 15 0.00033 28.7 6.6 32 295-326 40-71 (75)
5 KOG0994 Extracellular matrix g 66.7 34 0.00074 40.3 9.7 83 238-320 1168-1255(1758)
6 TIGR02894 DNA_bind_RsfA transc 66.6 95 0.0021 28.6 10.9 100 236-335 48-156 (161)
7 PRK11637 AmiB activator; Provi 64.1 1.8E+02 0.0039 30.4 14.2 23 299-321 98-120 (428)
8 PHA02047 phage lambda Rz1-like 64.1 46 0.00099 28.1 7.6 59 297-359 34-92 (101)
9 PF10805 DUF2730: Protein of u 60.8 51 0.0011 28.0 7.7 55 269-323 44-98 (106)
10 PF10157 DUF2365: Uncharacteri 59.2 1.3E+02 0.0028 27.3 10.5 72 47-132 61-132 (149)
11 PF08580 KAR9: Yeast cortical 58.5 3.1E+02 0.0068 30.9 17.9 24 160-183 128-151 (683)
12 PF10018 Med4: Vitamin-D-recep 57.4 1.1E+02 0.0025 28.3 10.2 44 299-342 24-67 (188)
13 KOG0994 Extracellular matrix g 56.1 4.4E+02 0.0095 31.8 23.1 64 114-181 1561-1624(1758)
14 PF07956 DUF1690: Protein of U 54.1 63 0.0014 29.0 7.5 88 246-344 36-126 (142)
15 PF15546 DUF4653: Domain of un 48.4 1.6E+02 0.0034 28.2 9.3 44 301-344 190-233 (239)
16 PF01601 Corona_S2: Coronaviru 47.2 82 0.0018 34.7 8.3 68 268-340 267-339 (610)
17 PRK11637 AmiB activator; Provi 46.1 3.7E+02 0.0081 28.1 13.1 61 267-329 75-135 (428)
18 PF10393 Matrilin_ccoil: Trime 42.9 54 0.0012 24.0 4.3 25 296-320 22-46 (47)
19 PF02403 Seryl_tRNA_N: Seryl-t 42.4 89 0.0019 26.0 6.3 33 292-324 69-101 (108)
20 PF07889 DUF1664: Protein of u 42.3 2.4E+02 0.0053 24.9 10.2 61 267-327 50-112 (126)
21 KOG3684 Ca2+-activated K+ chan 40.9 1E+02 0.0022 32.9 7.6 64 264-327 400-464 (489)
22 PF04380 BMFP: Membrane fusoge 39.5 98 0.0021 24.8 5.8 31 288-318 48-78 (79)
23 PLN02320 seryl-tRNA synthetase 38.4 93 0.002 33.7 7.1 30 300-329 133-162 (502)
24 PF07889 DUF1664: Protein of u 38.4 2.8E+02 0.0061 24.5 10.9 55 265-321 66-120 (126)
25 PF11932 DUF3450: Protein of u 38.3 2.6E+02 0.0056 27.0 9.7 18 265-282 54-71 (251)
26 PF03962 Mnd1: Mnd1 family; I 37.6 2.8E+02 0.0061 25.9 9.5 18 266-283 109-126 (188)
27 PF14723 SSFA2_C: Sperm-specif 36.2 2.2E+02 0.0048 26.6 8.1 62 266-327 104-175 (179)
28 PRK04654 sec-independent trans 35.4 1.4E+02 0.0031 28.7 7.0 16 211-226 9-24 (214)
29 PF06825 HSBP1: Heat shock fac 34.1 80 0.0017 23.8 4.1 24 295-318 26-49 (54)
30 COG5074 t-SNARE complex subuni 34.0 2.4E+02 0.0051 27.8 8.3 104 262-371 20-123 (280)
31 KOG3335 Predicted coiled-coil 34.0 1.9E+02 0.0042 27.0 7.5 53 292-344 101-153 (181)
32 TIGR02338 gimC_beta prefoldin, 33.7 2.1E+02 0.0045 24.1 7.3 44 295-338 65-108 (110)
33 KOG4191 Histone acetyltransfer 33.4 2.2E+02 0.0048 30.4 8.6 27 307-333 442-468 (516)
34 PF14389 Lzipper-MIP1: Leucine 33.1 1.1E+02 0.0025 25.0 5.3 36 295-330 52-87 (88)
35 PF04508 Pox_A_type_inc: Viral 33.0 43 0.00094 20.9 2.1 19 307-325 4-22 (23)
36 PF11172 DUF2959: Protein of u 32.2 2.2E+02 0.0048 27.1 7.7 57 270-326 42-100 (201)
37 TIGR03185 DNA_S_dndD DNA sulfu 32.1 2.9E+02 0.0062 30.7 10.0 62 265-326 396-457 (650)
38 PRK05431 seryl-tRNA synthetase 31.6 1.4E+02 0.0031 31.5 7.1 29 294-322 70-98 (425)
39 PLN02372 violaxanthin de-epoxi 29.6 2.5E+02 0.0053 29.8 8.1 32 308-339 407-438 (455)
40 PF09177 Syntaxin-6_N: Syntaxi 29.4 3.2E+02 0.0069 22.4 8.0 27 295-321 37-63 (97)
41 PRK09343 prefoldin subunit bet 29.2 2E+02 0.0043 24.9 6.5 47 295-341 69-115 (121)
42 PLN02678 seryl-tRNA synthetase 29.2 1.7E+02 0.0037 31.3 7.2 29 293-321 74-102 (448)
43 PRK00708 sec-independent trans 29.1 1.6E+02 0.0035 28.3 6.3 16 211-226 9-24 (209)
44 KOG0971 Microtubule-associated 28.8 2.2E+02 0.0048 33.2 8.1 40 293-333 451-490 (1243)
45 COG1579 Zn-ribbon protein, pos 28.6 3.6E+02 0.0077 26.4 8.7 23 316-338 94-116 (239)
46 COG1579 Zn-ribbon protein, pos 28.5 4.9E+02 0.011 25.5 9.7 18 264-281 86-103 (239)
47 PHA01750 hypothetical protein 28.1 1.2E+02 0.0026 23.8 4.3 13 295-307 61-73 (75)
48 PF02252 PA28_beta: Proteasome 27.9 4.6E+02 0.0099 23.7 9.5 86 242-345 10-96 (150)
49 TIGR01834 PHA_synth_III_E poly 27.5 6.5E+02 0.014 25.8 10.7 31 290-320 289-319 (320)
50 COG3352 FlaC Putative archaeal 27.4 2.5E+02 0.0053 25.7 6.8 47 293-339 68-114 (157)
51 PF10392 COG5: Golgi transport 27.3 4.2E+02 0.009 23.1 8.9 43 294-336 69-111 (132)
52 TIGR02132 phaR_Bmeg polyhydrox 26.1 1.1E+02 0.0024 28.6 4.5 32 296-327 71-102 (189)
53 PF05531 NPV_P10: Nucleopolyhe 25.9 2.9E+02 0.0062 22.3 6.2 29 298-326 36-64 (75)
54 PF10186 Atg14: UV radiation r 25.9 4.2E+02 0.009 25.6 9.0 16 357-372 207-222 (302)
55 PF05377 FlaC_arch: Flagella a 25.2 2.5E+02 0.0055 21.2 5.5 14 267-280 7-20 (55)
56 PRK04654 sec-independent trans 25.0 2.3E+02 0.005 27.3 6.5 13 312-324 80-92 (214)
57 TIGR00414 serS seryl-tRNA synt 25.0 2.4E+02 0.0051 29.7 7.4 31 293-323 72-102 (418)
58 PF03670 UPF0184: Uncharacteri 24.3 4E+02 0.0087 21.9 7.8 45 295-339 31-75 (83)
59 COG3883 Uncharacterized protei 24.3 3.1E+02 0.0066 27.3 7.5 54 267-322 52-105 (265)
60 KOG0978 E3 ubiquitin ligase in 24.1 9.1E+02 0.02 27.4 11.8 28 370-399 644-671 (698)
61 PF13887 MRF_C1: Myelin gene r 23.5 64 0.0014 22.3 1.8 22 297-318 14-35 (36)
62 PF05529 Bap31: B-cell recepto 23.3 3.6E+02 0.0078 24.8 7.5 29 296-324 160-188 (192)
63 COG1382 GimC Prefoldin, chaper 23.1 3.1E+02 0.0066 24.1 6.4 45 296-340 69-113 (119)
64 COG3264 Small-conductance mech 23.0 9.7E+02 0.021 27.8 11.9 75 294-372 143-217 (835)
65 COG1730 GIM5 Predicted prefold 22.8 2.2E+02 0.0047 25.8 5.7 30 298-327 95-124 (145)
66 PF12761 End3: Actin cytoskele 22.5 6.8E+02 0.015 23.8 9.9 33 306-339 162-194 (195)
67 PF00429 TLV_coat: ENV polypro 22.4 2E+02 0.0044 31.5 6.5 44 294-338 425-468 (561)
68 KOG2264 Exostosin EXT1L [Signa 21.9 4.9E+02 0.011 28.9 8.9 53 267-321 93-145 (907)
69 PF06419 COG6: Conserved oligo 21.4 6.2E+02 0.013 28.1 10.0 71 264-343 35-107 (618)
70 KOG0995 Centromere-associated 21.2 1.1E+03 0.025 26.0 12.5 30 68-97 109-142 (581)
71 PF05377 FlaC_arch: Flagella a 21.2 2.6E+02 0.0057 21.2 4.9 22 299-320 16-37 (55)
72 PF05531 NPV_P10: Nucleopolyhe 21.1 3.2E+02 0.007 22.0 5.7 31 295-325 23-56 (75)
73 PF05739 SNARE: SNARE domain; 20.9 3.5E+02 0.0075 19.8 6.8 24 311-334 32-55 (63)
74 PF08826 DMPK_coil: DMPK coile 20.7 4E+02 0.0087 20.5 8.4 33 246-283 2-34 (61)
75 PF00509 Hemagglutinin: Haemag 20.5 11 0.00024 40.7 -3.5 40 305-344 397-436 (550)
76 PF07106 TBPIP: Tat binding pr 20.1 2.5E+02 0.0054 25.4 5.6 52 267-318 86-137 (169)
No 1
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=1.9e-66 Score=522.01 Aligned_cols=321 Identities=39% Similarity=0.614 Sum_probs=289.8
Q ss_pred CCCCCCcccccC------CCCCC--CCCcchhhHHHHHHHHHHHHhhhCCCCC--CCcccHHHHHHHHHHHHHHHHHHHH
Q 014854 18 FFPFGNPFRMMS------PKGSR--LSPKLVSLLADFEETLAERLRKLMPKDK--DDILNLSWMRLAMESLCETHNVIKD 87 (417)
Q Consensus 18 ~~~~g~~~~~~~------~~~~~--~~~~~~p~l~~Fd~~L~~rL~~L~~s~~--~~~lSlswl~~al~~L~~~h~~v~~ 87 (417)
|.+||+++.+++ |..+| .++.+++.++.||+++++||++|.++.. +++||++||+++|+.|+.+|++|+.
T Consensus 6 ~~~~~~s~ls~rr~~~~~~~~~~~~~~~~~~~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr~ 85 (389)
T PF05633_consen 6 YQGFGRSLLSLRRDQVHSMSHNHEQEAESLEAELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFRA 85 (389)
T ss_pred cccccchhhhccccCCCCCCCCcccccccchhhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 345788888776 33333 3455678999999999999999998853 6799999999999999999999999
Q ss_pred HHhhcCC-CCC-chhhhHHHHHHhhhhhHHhhhhHHHHHHHhhhhhHHHHHHHHhhccCC---CchhhHHHHhhHhHHHH
Q 014854 88 LITELEL-PVS-DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS---SPTQFGRACSSLDNWRE 162 (417)
Q Consensus 88 Li~~l~l-p~~-~~~ekwVdeyLD~SlkLLDvCna~kd~L~~lr~~~~~Lq~al~~l~~~---~~~~~~Ra~~~L~~~~~ 162 (417)
||++++. |++ +|+||||+||||+|+|+||||||++++|+++++|++.+++|+|.+++. ++++++||+++|.+|..
T Consensus 86 li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~~~~~~rRAr~aL~dl~~ 165 (389)
T PF05633_consen 86 LITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPLGEGQLRRARKALSDLKI 165 (389)
T ss_pred HHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999987 988 799999999999999999999999999999999999999999999986 78999999999999987
Q ss_pred hh-----------hccCccch--------------------------------HHHHHHHHHhhcCCccccccchhhHHH
Q 014854 163 HI-----------SSKNPRVE--------------------------------SCRSILDNLVASLDLPKVKNSAKGKVL 199 (417)
Q Consensus 163 ~~-----------~s~n~~i~--------------------------------k~~~~Lk~m~~~L~~pK~~~s~k~~~l 199 (417)
.| .++|+.++ +|.++|++|+++|..||.+++++++++
T Consensus 166 ~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL 245 (389)
T PF05633_consen 166 AMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRGL 245 (389)
T ss_pred HHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccchH
Confidence 66 13343221 377899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccc-cccc-cCCCCCchHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHH
Q 014854 200 MRAMYGVKVLTVFVCSIFAAAFSGSAKNL-LELN-VSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVK 277 (417)
Q Consensus 200 ~~~Ly~v~~vTv~V~~vLlaals~~~~~l-~~l~-vp~~~~Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~ 277 (417)
++++|+|+++|+||||+|++||+|+++.+ .+++ +|++++|+.+|..||++|++|+++++++|++++++||++||++++
T Consensus 246 ~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr 325 (389)
T PF05633_consen 246 LRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEASVR 325 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999998755 5899 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh---ccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 014854 278 KLYEVIQN---EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 278 ~L~~~i~~---~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
+|++.++. +..+|+.+++++.|+||++.+++|++|||+|++|||++||+||++|+++||.|
T Consensus 326 ~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 326 ELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 99988876 45567778999999999999999999999999999999999999999999975
No 2
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=100.00 E-value=2.3e-31 Score=254.98 Aligned_cols=224 Identities=21% Similarity=0.339 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC------chhhhHHHHHHhhhhhHHhhhhHHHHHHHhhhhhHHHHHHHHhhccCCCc
Q 014854 74 AMESLCETHNVIKDLITELELPVS------DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSP 147 (417)
Q Consensus 74 al~~L~~~h~~v~~Li~~l~lp~~------~~~ekwVdeyLD~SlkLLDvCna~kd~L~~lr~~~~~Lq~al~~l~~~~~ 147 (417)
.|..|.++|+++.+|+ ++|.+ +. +||||++||+|++|||+|++++|.+.++|++++.||+|+|+.+ .++
T Consensus 2 gL~~L~~Ly~~~~ell---~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~-~~~ 76 (231)
T PF03087_consen 2 GLSGLKDLYECLEELL---QLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRD-DGS 76 (231)
T ss_pred chhHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chh
Confidence 5788999999999999 99977 34 7999999999999999999999999999999999999999987 222
Q ss_pred hhhHHHHhhHhHHHHhhhccCccchHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 014854 148 TQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKN 227 (417)
Q Consensus 148 ~~~~Ra~~~L~~~~~~~~s~n~~i~k~~~~Lk~m~~~L~~pK~~~s~k~~~l~~~Ly~v~~vTv~V~~vLlaals~~~~~ 227 (417)
+...+++|..+++.+ +|.+.|+...|+.+.++ ..+.......+..++.+++++..+|+.+|.+++.+++.|...
T Consensus 77 --~~~~i~sy~~~rKk~---kK~i~K~~~~lk~~~~~-~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~ 150 (231)
T PF03087_consen 77 --IESEIASYIRSRKKA---KKEIAKLLRSLKRMSNK-SSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKK 150 (231)
T ss_pred --HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcc-cCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 444455566666666 46788898999999876 222111111245689999999999999999999999986554
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 014854 228 LLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 307 (417)
Q Consensus 228 l~~l~vp~~~~Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le 307 (417)
|+..+|+.....++++..++.. ....+|++.++.+... +. +.++..++++|
T Consensus 151 ------~~~~~wslvsk~~~~~~~~~~~-------~~~~~e~~~~d~~~~~---------~~-------e~~~~~~~~Le 201 (231)
T PF03087_consen 151 ------SKSSKWSLVSKLMQKKRSCDSS-------EENRNEFEKVDAALKS---------DE-------EEVQNAQKRLE 201 (231)
T ss_pred ------ccccchhHHHHHHhcccccchh-------HHHHHHHHHHHHHhhh---------hh-------HHHHHHHHHHH
Confidence 5778899877777666532211 1256899999987543 11 23678899999
Q ss_pred HHhhchHHHHHHHhHHHHHHHHhHHHHHhh
Q 014854 308 NLSQGLDHLTKAVDGFFKIVLSGRDALLCN 337 (417)
Q Consensus 308 ~Le~gle~Le~~Vd~lFr~LI~~R~~LLni 337 (417)
+||.+|++||.++|++||+||++|++||||
T Consensus 202 ~LE~~Ie~lE~glE~vFR~LIktRVSLLNI 231 (231)
T PF03087_consen 202 ELEECIEELEEGLECVFRRLIKTRVSLLNI 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999997
No 3
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=99.94 E-value=6.1e-26 Score=227.26 Aligned_cols=296 Identities=19% Similarity=0.272 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCC----CcccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch--hhhHHHHHHhhhhhHHh
Q 014854 43 LADFEETLAERLRKLMPKDKD----DILNLSWMRLAMESLCETHNVIKDLITELELPVSDW--DEKWIDVYLDISVNLLD 116 (417)
Q Consensus 43 l~~Fd~~L~~rL~~L~~s~~~----~~lSlswl~~al~~L~~~h~~v~~Li~~l~lp~~~~--~ekwVdeyLD~SlkLLD 116 (417)
+++||..|++|+++++.+.+. ..+|++++.+..++|+++++++.++|++++..++.. -..+|++|||.|.+.+|
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~ 80 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASD 80 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHH
Confidence 468999999999999987422 357899999999999999999999999987764311 13599999999999999
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHhhccCCCch-----hhHHHHhhHhHHHHhhhccCccchH-HHHHHHH-------Hhh
Q 014854 117 ICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPT-----QFGRACSSLDNWREHISSKNPRVES-CRSILDN-------LVA 183 (417)
Q Consensus 117 vCna~kd~L~~lr~~~~~Lq~al~~l~~~~~~-----~~~Ra~~~L~~~~~~~~s~n~~i~k-~~~~Lk~-------m~~ 183 (417)
+|+++..+|.++|.+++.++.|+..++..+.. .-.+..++|.++++|...+||+... ...+++. |.+
T Consensus 81 ~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~ 160 (336)
T PF05055_consen 81 FCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLE 160 (336)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999754321 1245567899999999999996544 3333222 223
Q ss_pred cCCcc-----ccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccc-ccccCCC--CCchHHHHHHHHH-HH-
Q 014854 184 SLDLP-----KVKNSAKG-KVLMRAMYGVKVLTVFVCSIFAAAFSGSAK-NLL-ELNVSDT--LPWAPAFSALQAN-VN- 251 (417)
Q Consensus 184 ~L~~p-----K~~~s~k~-~~l~~~Ly~v~~vTv~V~~vLlaals~~~~-~l~-~l~vp~~--~~Ws~sl~~Lq~r-V~- 251 (417)
+|... |+....++ +.++++++.+.++++.|+++++++++.|+. .++ .+.+|-. ++|...+++-+.. +.
T Consensus 161 kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al~~ 240 (336)
T PF05055_consen 161 KLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEALKK 240 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHHHH
Confidence 33221 22223343 568899999999999999999999976653 232 2334543 4587766443221 11
Q ss_pred -HHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhc-------cc-hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 252 -AEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE-------VD-TVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 252 -eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~-------~~-~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
.+.-....+|++++.++|+.|...|.+|..+|+.. +. .++...+++.|++++++.+.|.+-||+||+++.-
T Consensus 241 ~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~l 320 (336)
T PF05055_consen 241 QKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYL 320 (336)
T ss_pred HHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11111223799999999999999999999998762 11 1223468899999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhh
Q 014854 323 FFKIVLSGRDALLCNL 338 (417)
Q Consensus 323 lFr~LI~~R~~LLnil 338 (417)
+|+.|-++|..+|+-|
T Consensus 321 C~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 321 CFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998753
No 4
>PHA01750 hypothetical protein
Probab=75.20 E-value=15 Score=28.72 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKI 326 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~ 326 (417)
++....+|+..++++....|.|+++|.++-+.
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33445555555555555556666666655443
No 5
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.66 E-value=34 Score=40.33 Aligned_cols=83 Identities=10% Similarity=0.263 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHHHH---HhhhhcCcc-hhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHhhc
Q 014854 238 PWAPAFSALQANVNAEV---RNILSSGRA-TVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRADNLSQG 312 (417)
Q Consensus 238 ~Ws~sl~~Lq~rV~eE~---~~~~~~g~~-~~l~Ele~Vdaav~~L~~~i~~-~~~~e~~e~v~~~veeL~~~le~Le~g 312 (417)
.|-..+.+|+.|...=+ ++.+..|.. +--.+|..++..++..+..+.. .+..+..+.+....++|++.+.++.+-
T Consensus 1168 ~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~ 1247 (1758)
T KOG0994|consen 1168 TWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTED 1247 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58878888877653211 111122332 3346777787777777766643 233344445555555555555554444
Q ss_pred hHHHHHHH
Q 014854 313 LDHLTKAV 320 (417)
Q Consensus 313 le~Le~~V 320 (417)
|-.+|..+
T Consensus 1248 L~~~E~~L 1255 (1758)
T KOG0994|consen 1248 LPQEEETL 1255 (1758)
T ss_pred hhhhhhhh
Confidence 44443333
No 6
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.65 E-value=95 Score=28.58 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCCchHHHHHH-HHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhc--c------chHHHHHHHHHHHHHHHHH
Q 014854 236 TLPWAPAFSAL-QANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE--V------DTVEEELLQKSVLDLGKRA 306 (417)
Q Consensus 236 ~~~Ws~sl~~L-q~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~--~------~~e~~e~v~~~veeL~~~l 306 (417)
+|.|.+.+.+- ++.|..--+.++...+....-.++.|=.-++.+....... . -.++.+.++..++.|.+..
T Consensus 48 GFRWNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 48 GFRWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899766443 3344221111111111112223566666666665431100 0 0122345677788888888
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHhHHHHH
Q 014854 307 DNLSQGLDHLTKAVDGFFKIVLSGRDALL 335 (417)
Q Consensus 307 e~Le~gle~Le~~Vd~lFr~LI~~R~~LL 335 (417)
+.|...+..+++.-..|+..+=++|...+
T Consensus 128 ~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888889999999999999998553
No 7
>PRK11637 AmiB activator; Provisional
Probab=64.14 E-value=1.8e+02 Score=30.45 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHh
Q 014854 299 VLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 299 veeL~~~le~Le~gle~Le~~Vd 321 (417)
++++++.++.++..|+.+++.++
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333444444333333
No 8
>PHA02047 phage lambda Rz1-like protein
Probab=64.09 E-value=46 Score=28.06 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccCCCCCCcccCCCcchhHHh
Q 014854 297 KSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRRK 359 (417)
Q Consensus 297 ~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~~~~~~~~~~~~~~~~~~~ 359 (417)
+.++.+...+|.++..+..+.++|+.+-.+--+.|.++++-|... +.|.+.++.+-+..
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n----~~WaD~PVPpaV~~ 92 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQN----RPWADRPVPPAVVD 92 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCChHHHH
Confidence 457888889999999999999999999999999999999998543 45555555555543
No 9
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.81 E-value=51 Score=27.96 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 014854 269 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 269 le~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~l 323 (417)
+...+.-+..+...++.--+.++...++..+.++...+..++..+++++.+++-+
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544421224455677788888888888888888877776654
No 10
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=59.25 E-value=1.3e+02 Score=27.28 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHHHHhhhhhHHhhhhHHHHHHH
Q 014854 47 EETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLT 126 (417)
Q Consensus 47 d~~L~~rL~~L~~s~~~~~lSlswl~~al~~L~~~h~~v~~Li~~l~lp~~~~~ekwVdeyLD~SlkLLDvCna~kd~L~ 126 (417)
=..+++.++.|..+. ..++.+|....--...+|++...-+ -..||......-.|+.-|..+.+.+.
T Consensus 61 a~~ia~svd~ll~~L---~~~L~~mS~~Tv~~~~~y~~sv~~~-----------cdsvD~sik~~y~liakceELn~~M~ 126 (149)
T PF10157_consen 61 AQAIAESVDSLLRSL---RSSLHSMSAITVEHMETYKDSVDKL-----------CDSVDASIKSMYTLIAKCEELNESMK 126 (149)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665543 2356777777766777777775555 12377777777778888888887776
Q ss_pred hhhhhH
Q 014854 127 KVSQGH 132 (417)
Q Consensus 127 ~lr~~~ 132 (417)
.+..-.
T Consensus 127 ~v~~La 132 (149)
T PF10157_consen 127 PVYKLA 132 (149)
T ss_pred HHHHHH
Confidence 665433
No 11
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=58.53 E-value=3.1e+02 Score=30.92 Aligned_cols=24 Identities=13% Similarity=0.504 Sum_probs=14.4
Q ss_pred HHHhhhccCccchHHHHHHHHHhh
Q 014854 160 WREHISSKNPRVESCRSILDNLVA 183 (417)
Q Consensus 160 ~~~~~~s~n~~i~k~~~~Lk~m~~ 183 (417)
|..+|+.-...|+.|.+..-.|.+
T Consensus 128 ~~~vlg~l~~EIe~~~~~vfemeE 151 (683)
T PF08580_consen 128 WNDVLGDLDNEIEECIRLVFEMEE 151 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444565545567777776666654
No 12
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=57.42 E-value=1.1e+02 Score=28.34 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccCC
Q 014854 299 VLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATG 342 (417)
Q Consensus 299 veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~~ 342 (417)
-+++..++..|+..++.++.++.++=+.|..+|..|-..+..+.
T Consensus 24 hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~ 67 (188)
T PF10018_consen 24 HQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQAD 67 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677778888888899999999999999999999999884433
No 13
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.05 E-value=4.4e+02 Score=31.82 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=30.9
Q ss_pred HHhhhhHHHHHHHhhhhhHHHHHHHHhhccCCCchhhHHHHhhHhHHHHhhhccCccchHHHHHHHHH
Q 014854 114 LLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNL 181 (417)
Q Consensus 114 LLDvCna~kd~L~~lr~~~~~Lq~al~~l~~~~~~~~~Ra~~~L~~~~~~~~s~n~~i~k~~~~Lk~m 181 (417)
+.+.=+.++.+|....+.+..++.||+.- +....-+...|...++.+.+..+...++..+|..+
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a----~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL 1624 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGA----DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL 1624 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666677666633 22333344444444444432223333344444443
No 14
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=54.10 E-value=63 Score=29.00 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHH-HHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 246 LQANVNAEVRNILSSGRATVLNELEAVDGSVKK-LYEVIQNEV--DTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 246 Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~-L~~~i~~~~--~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
+|+||++|..+-. -.|...++.++.. +... +... .......+...|+.|+.+++... .++.+....
T Consensus 36 iq~Rva~eL~~L~-------~~~~~~~~~~l~~~~~~e-d~~~~~~~lSs~~v~~~i~~L~~kLe~~~-kl~~~~~~~-- 104 (142)
T PF07956_consen 36 IQERVAEELKRLE-------EEELKKFEEALEKSLLSE-DEKDQDPGLSSKSVNEEIEKLREKLEERK-KLRELKEEK-- 104 (142)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccc-ccccccccccHHHHHHHHHHHHHHHHHHH-HHHhccccc--
Confidence 6999999887532 1344445444332 1110 0100 00112345555666665555442 222222222
Q ss_pred HHHHHHHhHHHHHhhhccCCCC
Q 014854 323 FFKIVLSGRDALLCNLRATGTA 344 (417)
Q Consensus 323 lFr~LI~~R~~LLnil~~~~~~ 344 (417)
-+..+-.+|..|...|+..+..
T Consensus 105 ~~~~v~~aR~~vv~CL~~N~~r 126 (142)
T PF07956_consen 105 NSEEVEKARSAVVRCLRENDGR 126 (142)
T ss_pred cchhhHHHHHHHHHHHHHCCCC
Confidence 2445688899999999876654
No 15
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=48.36 E-value=1.6e+02 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccCCCC
Q 014854 301 DLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTA 344 (417)
Q Consensus 301 eL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~~~~ 344 (417)
.|-+++..|...+.+=...+-+-|+.|+..|++|+..+.+....
T Consensus 190 ALl~Wir~LQ~~~~dQQ~RLQeSFDtILdnRKELiRclqq~~~p 233 (239)
T PF15546_consen 190 ALLRWIRGLQHQLVDQQNRLQESFDTILDNRKELIRCLQQRAAP 233 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcccCC
Confidence 45567777777778888888889999999999999999775443
No 16
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=47.24 E-value=82 Score=34.74 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH-----HHHHHhHHHHHhhhcc
Q 014854 268 ELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF-----KIVLSGRDALLCNLRA 340 (417)
Q Consensus 268 Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF-----r~LI~~R~~LLnil~~ 340 (417)
-|..+..|+.++...+ ..+.+++...+..|.+..++....|+++=..+|.+- +|||.||.+-||.+-.
T Consensus 267 g~~t~~~Al~KiQ~VV-----N~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAdaQVDRLItGRL~aLnafVt 339 (610)
T PF01601_consen 267 GFTTTASALNKIQDVV-----NQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADAQVDRLITGRLAALNAFVT 339 (610)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence 3555556666555442 245667888889999999999999998888887774 7899999999997743
No 17
>PRK11637 AmiB activator; Provisional
Probab=46.06 E-value=3.7e+02 Score=28.08 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHH
Q 014854 267 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLS 329 (417)
Q Consensus 267 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~ 329 (417)
.+++.++..+..+...+.. ...+...+...++.++..++.++.-|+...+.+....+.+=+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~--~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRE--TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333322 112333455556666666666666666655555555554444
No 18
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=42.93 E-value=54 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHH
Q 014854 296 QKSVLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 296 ~~~veeL~~~le~Le~gle~Le~~V 320 (417)
...++.|..+++.+...|+.||.++
T Consensus 22 ~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 22 TSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456667677777777777777654
No 19
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.43 E-value=89 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 014854 292 EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF 324 (417)
Q Consensus 292 ~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF 324 (417)
.+.+...+.+++..+..++.-++.++.+++.+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777776653
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=42.29 E-value=2.4e+02 Score=24.86 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 267 NELEAVDGSVKKLYEVIQNEVD--TVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 267 ~Ele~Vdaav~~L~~~i~~~~~--~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
+.+++|-.++..-+.++..-++ +.+.++..+..+.+++.+.++...++.+...++.+++.+
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556655555555544432110 122333444455555555555555555555555555544
No 21
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=40.86 E-value=1e+02 Score=32.93 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 264 TVLNELEAVDGSVKKLYEVIQNEVDTV-EEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 264 ~~l~Ele~Vdaav~~L~~~i~~~~~~e-~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
-.+++|++|+-.-++|.+....-++-- -...+.+.++++...-+.||..|+-||.+++.+-..+
T Consensus 400 ~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l 464 (489)
T KOG3684|consen 400 QAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASL 464 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999888887633211111 1235778899999999999999999999998876544
No 22
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=39.52 E-value=98 Score=24.83 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 014854 288 DTVEEELLQKSVLDLGKRADNLSQGLDHLTK 318 (417)
Q Consensus 288 ~~e~~e~v~~~veeL~~~le~Le~gle~Le~ 318 (417)
..|+-+..+..+...+.++++||..|..||.
T Consensus 48 tREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 48 TREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466666777777888888777777777775
No 23
>PLN02320 seryl-tRNA synthetase
Probab=38.42 E-value=93 Score=33.71 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHHHHHHHH
Q 014854 300 LDLGKRADNLSQGLDHLTKAVDGFFKIVLS 329 (417)
Q Consensus 300 eeL~~~le~Le~gle~Le~~Vd~lFr~LI~ 329 (417)
++++.....|.+.|..+|+++..+-..+..
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544444433
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.37 E-value=2.8e+02 Score=24.47 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 014854 265 VLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 265 ~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd 321 (417)
+..-++.||.-+++.....+. + .++..+++..++.++..++.+..-+..||..++
T Consensus 66 LsqRId~vd~klDe~~ei~~~-i-~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQ-I-KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665543222 1 123334444444444444444444444444443
No 25
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.33 E-value=2.6e+02 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 014854 265 VLNELEAVDGSVKKLYEV 282 (417)
Q Consensus 265 ~l~Ele~Vdaav~~L~~~ 282 (417)
...|++.+...++.|...
T Consensus 54 L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556677666666666554
No 26
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.61 E-value=2.8e+02 Score=25.90 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014854 266 LNELEAVDGSVKKLYEVI 283 (417)
Q Consensus 266 l~Ele~Vdaav~~L~~~i 283 (417)
+.+++.+......|..++
T Consensus 109 l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 109 LEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 27
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=36.21 E-value=2.2e+02 Score=26.58 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 266 LNELEAVDGSVKKLYEVIQN----------EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 266 l~Ele~Vdaav~~L~~~i~~----------~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
+.||+.++..++.++..+.+ .+-..--++-+.-|+.|+.-=+++++-+++||-|+++--..|
T Consensus 104 ~~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l 175 (179)
T PF14723_consen 104 VQELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQL 175 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655432 000000122355678888888888888999998888755444
No 28
>PRK04654 sec-independent translocase; Provisional
Probab=35.36 E-value=1.4e+02 Score=28.69 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcCCcc
Q 014854 211 VFVCSIFAAAFSGSAK 226 (417)
Q Consensus 211 v~V~~vLlaals~~~~ 226 (417)
++|..+++..|-||.+
T Consensus 9 LLlI~VVALlV~GPer 24 (214)
T PRK04654 9 LTLIAVVALVVLGPER 24 (214)
T ss_pred HHHHHHHHHHhcCchH
Confidence 4445555555567765
No 29
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=34.06 E-value=80 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHH
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTK 318 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~ 318 (417)
+-.+++++.++++.||..|.+|-.
T Consensus 26 I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 26 ILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 30
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=34.03 E-value=2.4e+02 Score=27.78 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=60.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccC
Q 014854 262 RATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRAT 341 (417)
Q Consensus 262 ~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~ 341 (417)
+...++++..+...+..+...+..+.. ...+.+.+.- .....++...||....+..+|=+.+=+.|.+.=.-= -
T Consensus 20 g~~f~~~i~si~~n~s~~e~~i~qi~~-~h~d~L~Ev~---e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~--i 93 (280)
T COG5074 20 GVTFMNKILSINKNLSVYEKEINQIDN-LHKDLLTEVF---EEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDG--I 93 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcc--c
Confidence 355677888888887777655433211 1111121111 222334566667777777777666655554432110 1
Q ss_pred CCCCCcccCCCcchhHHhhhhHHHhhhhhc
Q 014854 342 GTAPDILVGRNAEPVRRKLISQELAQTWRY 371 (417)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (417)
+.....+|..|+++..+++|-.|.--+-+|
T Consensus 94 hl~~k~aQae~~r~Kf~~~I~~yr~i~~~y 123 (280)
T COG5074 94 HLANKQAQAENVRQKFLKLIQDYRIIDSNY 123 (280)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 113457888899999999999998766555
No 31
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.02 E-value=1.9e+02 Score=27.01 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccCCCC
Q 014854 292 EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTA 344 (417)
Q Consensus 292 ~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~~~~ 344 (417)
++.-+..+.||+..++.|+..|+++.+.++++-..+-+-|..+-.+--..++.
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~ 153 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNP 153 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCC
Confidence 34456788999999999999999999999998866666655554443333333
No 32
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.70 E-value=2.1e+02 Score=24.15 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
..+.+.+|.++.+.++..|+.++++.+.+-..+...+..|=..+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777777777777777777666666554443
No 33
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=33.39 E-value=2.2e+02 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHhHHH
Q 014854 307 DNLSQGLDHLTKAVDGFFKIVLSGRDA 333 (417)
Q Consensus 307 e~Le~gle~Le~~Vd~lFr~LI~~R~~ 333 (417)
.++..-+|++.+|+++.|.+.++.|..
T Consensus 442 qe~~q~lddlDkqI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 442 QEFQQVLDDLDKQIEQAYVKRNRSRKK 468 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999999983
No 34
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=33.08 E-value=1.1e+02 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHh
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSG 330 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~ 330 (417)
+-..++++-..+..+|.-|-.||.+|..|++.+..-
T Consensus 52 lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q 87 (88)
T PF14389_consen 52 LPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQ 87 (88)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335588888888999999999999999999998653
No 35
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.96 E-value=43 Score=20.91 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=11.8
Q ss_pred HHHhhchHHHHHHHhHHHH
Q 014854 307 DNLSQGLDHLTKAVDGFFK 325 (417)
Q Consensus 307 e~Le~gle~Le~~Vd~lFr 325 (417)
+.+...|.+||.+++.+++
T Consensus 4 ~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445556777777776654
No 36
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=32.18 E-value=2.2e+02 Score=27.13 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhccch-H-HHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 014854 270 EAVDGSVKKLYEVIQNEVDT-V-EEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKI 326 (417)
Q Consensus 270 e~Vdaav~~L~~~i~~~~~~-e-~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~ 326 (417)
++.+.++..|...+....++ + .=+.+...-+......+.+...|+.+|...+.+|++
T Consensus 42 eQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~E 100 (201)
T PF11172_consen 42 EQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDE 100 (201)
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788887776542222 2 123566777788888888899999999999999874
No 37
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.08 E-value=2.9e+02 Score=30.68 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 014854 265 VLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKI 326 (417)
Q Consensus 265 ~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~ 326 (417)
..++++.++..+..+...+....++++...+.+..+++++.++.++.-++.+..+++.+-..
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667666666666665432333333333444444444444443333333333333333
No 38
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.56 E-value=1.4e+02 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 294 LLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 294 ~v~~~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
++.+.+.++++.+..++.-++.++++++.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444443
No 39
>PLN02372 violaxanthin de-epoxidase
Probab=29.58 E-value=2.5e+02 Score=29.82 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.3
Q ss_pred HHhhchHHHHHHHhHHHHHHHHhHHHHHhhhc
Q 014854 308 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 339 (417)
Q Consensus 308 ~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~ 339 (417)
.|++|+..|+.....+.+.+-+--+.+|+-+.
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~ 438 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKEEKELLEKLK 438 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 48999999999999999999999998888764
No 40
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=29.40 E-value=3.2e+02 Score=22.39 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHh
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd 321 (417)
+...-.+|+..++.++.-|++|++-|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666555666666555554
No 41
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.23 E-value=2e+02 Score=24.92 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccC
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRAT 341 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~ 341 (417)
..++.+++.+++|.++..|+.+|++.+.+=..+...+..|-..+..+
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888888888888888888888888888888888887777553
No 42
>PLN02678 seryl-tRNA synthetase
Probab=29.16 E-value=1.7e+02 Score=31.29 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 014854 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 293 e~v~~~veeL~~~le~Le~gle~Le~~Vd 321 (417)
+++.+.+.+|+..+..|+.-++.++.+++
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555555555555554
No 43
>PRK00708 sec-independent translocase; Provisional
Probab=29.09 E-value=1.6e+02 Score=28.25 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCcc
Q 014854 211 VFVCSIFAAAFSGSAK 226 (417)
Q Consensus 211 v~V~~vLlaals~~~~ 226 (417)
++|..+++..|-||.+
T Consensus 9 LlvI~vVaLvV~GPkr 24 (209)
T PRK00708 9 LLVIAIVLIVVVGPKD 24 (209)
T ss_pred HHHHHHHHHhhcCchH
Confidence 4555555555667754
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.81 E-value=2.2e+02 Score=33.17 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHH
Q 014854 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDA 333 (417)
Q Consensus 293 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~ 333 (417)
+.+.+.==+|..++..||+.|.+||. ++++-..++..-..
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRE 490 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34444445677777777777777764 56677777665443
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.56 E-value=3.6e+02 Score=26.44 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=11.2
Q ss_pred HHHHHhHHHHHHHHhHHHHHhhh
Q 014854 316 LTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 316 Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
|..+++-.=+++..-+..|.+..
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555543
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.46 E-value=4.9e+02 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 014854 264 TVLNELEAVDGSVKKLYE 281 (417)
Q Consensus 264 ~~l~Ele~Vdaav~~L~~ 281 (417)
...+|++...-.+..+..
T Consensus 86 ~~~~e~~aL~~E~~~ak~ 103 (239)
T COG1579 86 KDERELRALNIEIQIAKE 103 (239)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 344555555554444443
No 47
>PHA01750 hypothetical protein
Probab=28.05 E-value=1.2e+02 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 014854 295 LQKSVLDLGKRAD 307 (417)
Q Consensus 295 v~~~veeL~~~le 307 (417)
+.+.|++++++++
T Consensus 61 l~~qv~eik~k~d 73 (75)
T PHA01750 61 LSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHhhc
Confidence 3444555555543
No 48
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=27.91 E-value=4.6e+02 Score=23.74 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHHHhhchHHHHHHH
Q 014854 242 AFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSV-LDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 242 sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~v-eeL~~~le~Le~gle~Le~~V 320 (417)
.+..|.+.|..|+.. ++..+..|...+.-+.+.|+.|-+ +..+| +++-..+.+.+...+.+-.++
T Consensus 10 ~I~~l~~~vk~ei~~--------l~e~~~~vk~WI~l~IPkiEDGNN------FGV~VQeevl~~l~~v~~~a~~~~~~i 75 (150)
T PF02252_consen 10 KIVELLQKVKPEIRE--------LIEKCNTVKMWIQLLIPKIEDGNN------FGVSVQEEVLEELRAVESKAENFLDQI 75 (150)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHT-----SS--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCcccccCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777763 567788888888888888876532 22223 233333333333334433333
Q ss_pred hHHHHHHHHhHHHHHhhhccCCCCC
Q 014854 321 DGFFKIVLSGRDALLCNLRATGTAP 345 (417)
Q Consensus 321 d~lFr~LI~~R~~LLnil~~~~~~~ 345 (417)
...| .+|..+...+...|+..
T Consensus 76 ~~Y~----~~Ra~~v~k~~K~p~v~ 96 (150)
T PF02252_consen 76 SKYF----SARAKAVSKAAKYPHVE 96 (150)
T ss_dssp HHHH----HHHHHHHHHHHH-TTBT
T ss_pred HHHH----HHHHHHHHHHHhCCCHH
Confidence 3333 57888888888888874
No 49
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.50 E-value=6.5e+02 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 014854 290 VEEELLQKSVLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 290 e~~e~v~~~veeL~~~le~Le~gle~Le~~V 320 (417)
.+.+++.+++.+|++.+..|+..|..+++++
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4566777888888888888887777777653
No 50
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=27.43 E-value=2.5e+02 Score=25.73 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhc
Q 014854 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 339 (417)
Q Consensus 293 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~ 339 (417)
+..++.++.++..++.|+..+.+|...++.+.+.+.--|...+..++
T Consensus 68 ~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~ 114 (157)
T COG3352 68 EGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESR 114 (157)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHH
Confidence 34677889999999999999999999999999999888877776653
No 51
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=27.31 E-value=4.2e+02 Score=23.05 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHh
Q 014854 294 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLC 336 (417)
Q Consensus 294 ~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLn 336 (417)
.+...++.++..++.|..+++.|..+|-+=|..+-+....|=+
T Consensus 69 ~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~r 111 (132)
T PF10392_consen 69 ELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLER 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445678888888888888888888888888888777666543
No 52
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.08 E-value=1.1e+02 Score=28.65 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 296 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 296 ~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
+.-|.++.+.+=++|..||.||++.++.|+.+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l 102 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDEL 102 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 53
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=25.94 E-value=2.9e+02 Score=22.29 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 014854 298 SVLDLGKRADNLSQGLDHLTKAVDGFFKI 326 (417)
Q Consensus 298 ~veeL~~~le~Le~gle~Le~~Vd~lFr~ 326 (417)
.|.++.++++++...++.|+.+|+..-+.
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888888888888877765443
No 54
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.91 E-value=4.2e+02 Score=25.55 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=7.2
Q ss_pred HHhhhhHHHhhhhhcC
Q 014854 357 RRKLISQELAQTWRYY 372 (417)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (417)
.+.+++.||.-.+.|.
T Consensus 207 lv~lls~yL~v~Lpy~ 222 (302)
T PF10186_consen 207 LVSLLSRYLGVPLPYP 222 (302)
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3444444544444443
No 55
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.22 E-value=2.5e+02 Score=21.25 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHH
Q 014854 267 NELEAVDGSVKKLY 280 (417)
Q Consensus 267 ~Ele~Vdaav~~L~ 280 (417)
+|+.+++..+..++
T Consensus 7 n~~~~~~~~i~tvk 20 (55)
T PF05377_consen 7 NELPRIESSINTVK 20 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 56
>PRK04654 sec-independent translocase; Provisional
Probab=25.05 E-value=2.3e+02 Score=27.26 Aligned_cols=13 Identities=0% Similarity=0.138 Sum_probs=5.1
Q ss_pred chHHHHHHHhHHH
Q 014854 312 GLDHLTKAVDGFF 324 (417)
Q Consensus 312 gle~Le~~Vd~lF 324 (417)
..++++...+.++
T Consensus 80 ~~~el~q~a~~~~ 92 (214)
T PRK04654 80 TQQQVEQGARALH 92 (214)
T ss_pred HHHHHHHHHHHhh
Confidence 3333333333333
No 57
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.03 E-value=2.4e+02 Score=29.73 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 014854 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 293 e~v~~~veeL~~~le~Le~gle~Le~~Vd~l 323 (417)
+++.+.+.++++.+..|+..++.+++++++.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555555555555443
No 58
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.31 E-value=4e+02 Score=21.88 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhc
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 339 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~ 339 (417)
+-..++.|-.+++.||+.-|.|..++..|-..=-.+|..+=.-+.
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344466677777777777788888877777776777776654443
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.28 E-value=3.1e+02 Score=27.34 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 267 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 267 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
+|++.++.-+..+...+++ ..++.+..+.-+..+++.++.+++.|..-.+-+++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~--~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDE--LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 60
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=9.1e+02 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=22.7
Q ss_pred hcCCCceeecccccccCCCcceehhhhhhh
Q 014854 370 RYYPPCFISKSWITNLSPACYGVHCVNLLG 399 (417)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
=+-|-|. ..|..-+=+-||-|-|-|-.-
T Consensus 644 LkCs~Cn--~R~Kd~vI~kC~H~FC~~Cvq 671 (698)
T KOG0978|consen 644 LKCSVCN--TRWKDAVITKCGHVFCEECVQ 671 (698)
T ss_pred eeCCCcc--CchhhHHHHhcchHHHHHHHH
Confidence 3556777 889999999999999887553
No 61
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=23.52 E-value=64 Score=22.31 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHH
Q 014854 297 KSVLDLGKRADNLSQGLDHLTK 318 (417)
Q Consensus 297 ~~veeL~~~le~Le~gle~Le~ 318 (417)
.+++||-+.-+.|+..||++|+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 3477777777777888877764
No 62
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.26 E-value=3.6e+02 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 014854 296 QKSVLDLGKRADNLSQGLDHLTKAVDGFF 324 (417)
Q Consensus 296 ~~~veeL~~~le~Le~gle~Le~~Vd~lF 324 (417)
.+.++++++.+++-+..++.|-+|.+.+-
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666653
No 63
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.13 E-value=3.1e+02 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhcc
Q 014854 296 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRA 340 (417)
Q Consensus 296 ~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~ 340 (417)
.+.+++|..+.|.|+..|+.|+++-+.+=.++=+-+.+|-+.+..
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356788888888888888888888888877777777777776643
No 64
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=22.99 E-value=9.7e+02 Score=27.78 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccCCCCCCcccCCCcchhHHhhhhHHHhhhhhcC
Q 014854 294 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRRKLISQELAQTWRYY 372 (417)
Q Consensus 294 ~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (417)
+.+++...-+..+.+++..-|.+..++++.-+.|...|-+|++.+.++...- +--.-++.+--+++++...+++.
T Consensus 143 ~eR~~L~~e~~~in~~~~~~e~ls~~~~~~ld~I~~~RReLf~~~l~~~~~i----s~~l~~~q~~~~~d~l~~~~~~~ 217 (835)
T COG3264 143 QERDALQAEKAYINALEGQAEQLTAEVRDILDQILDTRRELLNSLLSQREAI----SLQLNQQQLSAASDELRSLLHQQ 217 (835)
T ss_pred HHHHHHhhhHHHHHHHhcchhhhCHHHHHHHHHHHHHHHHHHHHHHhhcccc----CHhhhHHHHHHHHHHHHHHHHHh
Confidence 4566666777778888888899999999999999999999999988877221 11222445555666666655443
No 65
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=2.2e+02 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 298 SVLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 298 ~veeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
+++-|++++++|+..++.+...++++.+++
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~ 124 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRI 124 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 66
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.53 E-value=6.8e+02 Score=23.82 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=21.0
Q ss_pred HHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhc
Q 014854 306 ADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 339 (417)
Q Consensus 306 le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~ 339 (417)
+..+++-|+.|+.||+.|=..| +.|...|.-|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L-~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL-SSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 4445566677777777665555 67777776553
No 67
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=22.38 E-value=2e+02 Score=31.55 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 014854 294 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 294 ~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
...+...++..-+++++++|..|+++++.+...++..|.+| |+|
T Consensus 425 ~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l-D~l 468 (561)
T PF00429_consen 425 QYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL-DLL 468 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh-hhh
Confidence 34455666777778889999999999999999999999875 443
No 68
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.89 E-value=4.9e+02 Score=28.93 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 014854 267 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 267 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd 321 (417)
.|+.+.++.-++|.++|+.- .-+.|+++..+..-|..++.|+..|+.-+.+.+
T Consensus 93 ~EL~ele~krqel~seI~~~--n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEI--NTKIEELKRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 45555555555555544321 112333444444444444444444444444333
No 69
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=21.37 E-value=6.2e+02 Score=28.09 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH--HHHHHhHHHHHhhhccC
Q 014854 264 TVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF--KIVLSGRDALLCNLRAT 341 (417)
Q Consensus 264 ~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF--r~LI~~R~~LLnil~~~ 341 (417)
..++||..|...++.+...++. +...-+++.+.+.+-...-.++-.+++.|. +..++.|..+|+.+...
T Consensus 35 ~~L~~f~~v~~~l~~~~~~v~~---------l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 35 EFLKEFSPVNRQLKRLQSDVDK---------LNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999998888888665432 344455555555555666666666666663 45678888888876654
Q ss_pred CC
Q 014854 342 GT 343 (417)
Q Consensus 342 ~~ 343 (417)
=+
T Consensus 106 f~ 107 (618)
T PF06419_consen 106 FT 107 (618)
T ss_pred CC
Confidence 33
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.24 E-value=1.1e+03 Score=25.99 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=20.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhcCCCCC
Q 014854 68 LSWMRLAMESL----CETHNVIKDLITELELPVS 97 (417)
Q Consensus 68 lswl~~al~~L----~~~h~~v~~Li~~l~lp~~ 97 (417)
+.||-..|+-- .....+|..++.++++|..
T Consensus 109 FkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~ 142 (581)
T KOG0995|consen 109 FKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFL 142 (581)
T ss_pred HHHHHhccCCCcccchhHHHHHHHHHHhCCCCcc
Confidence 56666655533 3447788888888888843
No 71
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.16 E-value=2.6e+02 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHH
Q 014854 299 VLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 299 veeL~~~le~Le~gle~Le~~V 320 (417)
+..+++..+.+.+.+|.+++-|
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 72
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.11 E-value=3.2e+02 Score=22.01 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHH---HhhchHHHHHHHhHHHH
Q 014854 295 LQKSVLDLGKRADN---LSQGLDHLTKAVDGFFK 325 (417)
Q Consensus 295 v~~~veeL~~~le~---Le~gle~Le~~Vd~lFr 325 (417)
++..|+.++..+.. |...+|.+..+++.+-.
T Consensus 23 Lq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 23 LQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 33334444443322 55556666666665544
No 73
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.88 E-value=3.5e+02 Score=19.82 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=11.6
Q ss_pred hchHHHHHHHhHHHHHHHHhHHHH
Q 014854 311 QGLDHLTKAVDGFFKIVLSGRDAL 334 (417)
Q Consensus 311 ~gle~Le~~Vd~lFr~LI~~R~~L 334 (417)
.-||.|+..++..-..+-++...|
T Consensus 32 ~~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 32 EMLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555554444443
No 74
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.69 E-value=4e+02 Score=20.51 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHH
Q 014854 246 LQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVI 283 (417)
Q Consensus 246 Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i 283 (417)
||.-+-.||+.+ ...-.|+.+|.++-..+...+
T Consensus 2 lQsaL~~Eirak-----Q~~~eEL~kvk~~n~~~e~kL 34 (61)
T PF08826_consen 2 LQSALEAEIRAK-----QAIQEELTKVKSANLAFESKL 34 (61)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666543 134467777776655554443
No 75
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=20.54 E-value=11 Score=40.72 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhccCCCC
Q 014854 305 RADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTA 344 (417)
Q Consensus 305 ~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~~~~~~ 344 (417)
.+..+|..|+.|+++||+-+-++..--.+||-.|...++.
T Consensus 397 ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tl 436 (550)
T PF00509_consen 397 EFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTL 436 (550)
T ss_dssp SSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccch
Confidence 3344455556666666666767766666666666555444
No 76
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.06 E-value=2.5e+02 Score=25.39 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 014854 267 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTK 318 (417)
Q Consensus 267 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~ 318 (417)
.|+..+...+..|..++..-...--.+++...+++++..++.++..|+.|..
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555444332000000122455555555555555555555543
Done!