Query 014854
Match_columns 417
No_of_seqs 141 out of 293
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 59.5 11 0.00036 23.5 3.3 22 301-322 5-26 (31)
2 2pnv_A Small conductance calci 55.6 22 0.00076 24.5 4.9 29 297-325 9-37 (43)
3 2akf_A Coronin-1A; coiled coil 51.0 21 0.00072 22.6 3.7 18 296-313 12-29 (32)
4 3na7_A HP0958; flagellar bioge 50.3 74 0.0025 29.5 9.4 21 316-336 95-115 (256)
5 2xz3_A Maltose ABC transporter 39.7 92 0.0032 31.0 8.8 43 295-338 377-419 (463)
6 2akf_A Coronin-1A; coiled coil 39.3 42 0.0014 21.2 3.8 23 298-320 7-29 (32)
7 2yy0_A C-MYC-binding protein; 37.6 51 0.0017 23.6 4.6 32 290-321 19-50 (53)
8 1kd8_B GABH BLL, GCN4 acid bas 35.9 31 0.0011 22.8 2.9 24 300-323 4-27 (36)
9 1g6u_A Domain swapped dimer; d 35.7 1E+02 0.0035 20.9 6.2 32 285-316 15-46 (48)
10 1ud0_A HSC70, 70 kDa heat-shoc 34.1 1.5E+02 0.0052 23.4 7.7 15 292-306 34-48 (113)
11 1wt6_A Myotonin-protein kinase 33.2 1.7E+02 0.0059 22.8 8.9 36 243-283 12-47 (81)
12 2p32_A Heat shock 70 kDa prote 32.8 1.7E+02 0.0059 23.6 8.0 20 288-307 44-63 (120)
13 3nmd_A CGMP dependent protein 32.5 1.1E+02 0.0036 23.4 5.9 25 298-322 41-65 (72)
14 1iq5_B Ca2+/calmodulin depende 32.2 14 0.00047 23.1 0.7 7 20-26 21-27 (27)
15 3onj_A T-snare VTI1; helix, HA 31.6 1.9E+02 0.0065 22.8 8.7 52 268-323 9-60 (97)
16 1ses_A Seryl-tRNA synthetase; 31.0 82 0.0028 31.7 6.7 56 266-322 41-96 (421)
17 1mof_A Moloney murine leukemia 30.7 61 0.0021 23.5 4.1 32 306-338 4-35 (55)
18 1ckk_B Camkk, protein (RAT Ca2 28.6 16 0.00055 22.5 0.6 6 20-25 21-26 (26)
19 1lq7_A Alpha3W; three helix bu 28.3 1.7E+02 0.0057 21.1 7.4 31 294-324 29-61 (67)
20 3mq7_A Bone marrow stromal ant 27.7 2E+02 0.0067 24.0 7.2 33 296-328 70-102 (121)
21 1aq5_A Matrilin-1, CMP, cartil 27.4 88 0.003 21.9 4.3 24 297-320 23-46 (47)
22 4dnd_A Syntaxin-10, SYN10; str 27.1 2E+02 0.0069 24.1 7.5 27 295-321 65-91 (130)
23 2oxj_A Hybrid alpha/beta pepti 26.9 55 0.0019 21.3 2.9 25 299-323 3-27 (34)
24 1t2k_D Cyclic-AMP-dependent tr 26.6 1.5E+02 0.005 21.3 5.7 28 300-327 25-52 (61)
25 1m1j_C Fibrinogen gamma chain; 24.8 4.6E+02 0.016 26.2 10.9 47 234-285 20-66 (409)
26 1y4m_A HERV-FRD_6P24.1 proviru 24.7 33 0.0011 24.7 1.7 31 307-338 3-33 (53)
27 3c3f_A Alpha/beta peptide with 24.3 92 0.0032 20.2 3.6 25 299-323 3-27 (34)
28 3hnw_A Uncharacterized protein 24.1 2.9E+02 0.0098 23.4 8.0 56 265-322 80-135 (138)
29 3lof_A Heat shock 70 kDa prote 23.9 2.6E+02 0.0087 22.2 7.4 21 288-308 35-55 (113)
30 1ozj_A SMAD 3; MAD homology do 23.3 98 0.0034 26.7 4.8 30 290-320 26-55 (144)
31 2wq1_A General control protein 23.0 98 0.0034 20.0 3.5 23 301-323 4-26 (33)
32 1pzq_A Erythronolide synthase; 22.9 1.5E+02 0.0052 20.9 4.8 37 296-332 11-49 (60)
33 3mtu_A Tropomyosin alpha-1 cha 22.8 1.5E+02 0.0052 22.4 5.4 38 293-330 5-42 (75)
34 1kd8_A GABH AIV, GCN4 acid bas 22.8 50 0.0017 21.8 2.1 18 306-323 10-27 (36)
35 2pnv_A Small conductance calci 22.6 75 0.0026 21.8 3.1 22 299-320 18-39 (43)
36 2zqm_A Prefoldin beta subunit 22.2 2E+02 0.007 22.7 6.5 45 295-339 68-112 (117)
37 3na7_A HP0958; flagellar bioge 21.8 4.2E+02 0.014 24.2 9.4 34 294-327 122-155 (256)
38 4g2k_A General control protein 20.6 3.7E+02 0.013 22.4 8.6 25 310-334 59-83 (125)
39 3mq9_A Bone marrow stromal ant 20.6 4.4E+02 0.015 25.9 9.9 75 239-323 395-469 (471)
40 1jnm_A Proto-oncogene C-JUN; B 20.2 1.3E+02 0.0045 21.7 4.4 34 298-331 23-56 (62)
41 1apq_A Complement protease C1R 20.1 14 0.00048 25.4 -1.0 20 387-407 20-39 (53)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=59.54 E-value=11 Score=23.52 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhchHHHHHHHhH
Q 014854 301 DLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 301 eL~~~le~Le~gle~Le~~Vd~ 322 (417)
.|.++|.+|+..++.||+.++.
T Consensus 5 alekkcaalesklqalekklea 26 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 2
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=55.55 E-value=22 Score=24.53 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 014854 297 KSVLDLGKRADNLSQGLDHLTKAVDGFFK 325 (417)
Q Consensus 297 ~~veeL~~~le~Le~gle~Le~~Vd~lFr 325 (417)
+-+-++..+-+.||+.|..||..++.+-.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665543
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.03 E-value=21 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhch
Q 014854 296 QKSVLDLGKRADNLSQGL 313 (417)
Q Consensus 296 ~~~veeL~~~le~Le~gl 313 (417)
...|++|+++++.||+.+
T Consensus 12 ~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 12 NAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666555555443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.29 E-value=74 Score=29.54 Aligned_cols=21 Identities=10% Similarity=-0.175 Sum_probs=7.9
Q ss_pred HHHHHhHHHHHHHHhHHHHHh
Q 014854 316 LTKAVDGFFKIVLSGRDALLC 336 (417)
Q Consensus 316 Le~~Vd~lFr~LI~~R~~LLn 336 (417)
|..+++.+=+++-.....++.
T Consensus 95 L~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 5
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=39.68 E-value=92 Score=30.97 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
.+.-+++++.-++++++.|..|+++++.+-..++.+|-.| |.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 419 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL-DWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hHH
Confidence 3455788999999999999999999999999999999864 443
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.31 E-value=42 Score=21.20 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHH
Q 014854 298 SVLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 298 ~veeL~~~le~Le~gle~Le~~V 320 (417)
.+..|+..+.+|.+.+|.||+.|
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777665
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.63 E-value=51 Score=23.56 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 014854 290 VEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 290 e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd 321 (417)
.+.+.++.-.++|+.+++.|...++++..+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777777666554
No 8
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.92 E-value=31 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHH
Q 014854 300 LDLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 300 eeL~~~le~Le~gle~Le~~Vd~l 323 (417)
..|..++|.|-..-.+|+.+|..+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444455555555554
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.67 E-value=1e+02 Score=20.86 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=21.1
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 014854 285 NEVDTVEEELLQKSVLDLGKRADNLSQGLDHL 316 (417)
Q Consensus 285 ~~~~~e~~e~v~~~veeL~~~le~Le~gle~L 316 (417)
.|..|++-..+....+.+.+++.+|...++.|
T Consensus 15 egfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566766666666777777777777666553
No 10
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=34.06 E-value=1.5e+02 Score=23.43 Aligned_cols=15 Identities=0% Similarity=-0.044 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 014854 292 EELLQKSVLDLGKRA 306 (417)
Q Consensus 292 ~e~v~~~veeL~~~l 306 (417)
.+.+...+++++.++
T Consensus 34 k~~i~~~i~~l~~~L 48 (113)
T 1ud0_A 34 KQKILDKCNEIISWL 48 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455554444
No 11
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.24 E-value=1.7e+02 Score=22.76 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHH
Q 014854 243 FSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVI 283 (417)
Q Consensus 243 l~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i 283 (417)
...||...-.||+.+- ..-.|+.+|+++...+...+
T Consensus 12 ~leLQSALeaEIqAKQ-----~i~EELs~vr~~ni~~eskL 47 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQ-----SLSREMEAIRTDNQNFASQL 47 (81)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3478888888887642 35688888888776665543
No 12
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=32.83 E-value=1.7e+02 Score=23.60 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 014854 288 DTVEEELLQKSVLDLGKRAD 307 (417)
Q Consensus 288 ~~e~~e~v~~~veeL~~~le 307 (417)
.+++.+.+...+++++.+++
T Consensus 44 ~~eek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 44 SPEDKKKIEDKCDEILKWLD 63 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677766664
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.51 E-value=1.1e+02 Score=23.44 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 298 SVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 298 ~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
.|+++.+.+...+.-|..|-.++|.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544444444444444444444
No 14
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=32.23 E-value=14 Score=23.08 Aligned_cols=7 Identities=86% Similarity=1.701 Sum_probs=5.8
Q ss_pred CCCCccc
Q 014854 20 PFGNPFR 26 (417)
Q Consensus 20 ~~g~~~~ 26 (417)
||||||.
T Consensus 21 sf~nPf~ 27 (27)
T 1iq5_B 21 RFGNPFR 27 (27)
T ss_dssp SSSCSCC
T ss_pred cccCCCC
Confidence 7899984
No 15
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=31.56 E-value=1.9e+02 Score=22.78 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 014854 268 ELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 268 Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~l 323 (417)
||..+-+-+......+....+ + .=+..+.+++..++..++-|+.++-++..+
T Consensus 9 df~~~~~~i~~~l~~~~~~~g-e---~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 9 DFKTTLEQAKASLAEAPSQPL-S---QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHGGGSCH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444444444444332111 1 235667777888888888888888888777
No 16
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.01 E-value=82 Score=31.67 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 266 LNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 266 l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
..|++++.+.-..+...|.. ...++.+++...+.+++..+..++..+..++++++.
T Consensus 41 ~~~~~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 41 KKRLQEVQTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332 122344455666666666666666666666655544
No 17
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=30.68 E-value=61 Score=23.51 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=23.9
Q ss_pred HHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 014854 306 ADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 306 le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
++.+++.|..+.++++.+...+..+|..| |.|
T Consensus 4 l~~~~~si~~l~~ql~sla~vvlQNRraL-D~L 35 (55)
T 1mof_A 4 LREVEKSISNLEKSLTSLSEVVLQNRRGL-DLL 35 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34556777888888888999999999864 443
No 18
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=28.58 E-value=16 Score=22.55 Aligned_cols=6 Identities=83% Similarity=1.796 Sum_probs=5.1
Q ss_pred CCCCcc
Q 014854 20 PFGNPF 25 (417)
Q Consensus 20 ~~g~~~ 25 (417)
||||||
T Consensus 21 sf~nPf 26 (26)
T 1ckk_B 21 SFGNPF 26 (26)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 789997
No 19
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.32 E-value=1.7e+02 Score=21.07 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhc--hHHHHHHHhHHH
Q 014854 294 LLQKSVLDLGKRADNLSQG--LDHLTKAVDGFF 324 (417)
Q Consensus 294 ~v~~~veeL~~~le~Le~g--le~Le~~Vd~lF 324 (417)
+++..-++|++.++.|.-| +..+|++|..+-
T Consensus 29 elkkkweelkkkieelggggevkkveeevkkle 61 (67)
T 1lq7_A 29 ELKKKWEELKKKIEELGGGGEVKKVEEEVKKLE 61 (67)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 3445555555555555433 233444444443
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.68 E-value=2e+02 Score=23.98 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHH
Q 014854 296 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVL 328 (417)
Q Consensus 296 ~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI 328 (417)
...|++|+..+..|..-|++.+.+|+.+-+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 456899999999999999999999999888764
No 21
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=27.38 E-value=88 Score=21.94 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 014854 297 KSVLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 297 ~~veeL~~~le~Le~gle~Le~~V 320 (417)
..++.|..+++.+...++.||.++
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446666666666666666666553
No 22
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=27.12 E-value=2e+02 Score=24.07 Aligned_cols=27 Identities=15% Similarity=0.264 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHh
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVD 321 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd 321 (417)
+...-.||+..++.++.-|++|++-|.
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.90 E-value=55 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHH
Q 014854 299 VLDLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 299 veeL~~~le~Le~gle~Le~~Vd~l 323 (417)
|..|..++|.|-..=++|+.+|+.+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444445555555556666666655
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.58 E-value=1.5e+02 Score=21.33 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 300 LDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 300 eeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
++|+..++.|+.--..|..+|..+-..+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444443333333
No 25
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.81 E-value=4.6e+02 Score=26.23 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhh
Q 014854 234 SDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN 285 (417)
Q Consensus 234 p~~~~Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~ 285 (417)
|-+..=...+.+.+.-|..+++.-+ ..++|+++.-..+..|...|+.
T Consensus 20 PT~C~i~d~L~k~e~~V~~~l~~LE-----~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 20 PTTCGIADFFNKYRLTTDGELLEIE-----GLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhcchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455666665654444322 2578888888888888877754
No 26
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=24.74 E-value=33 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=24.7
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 014854 307 DNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (417)
Q Consensus 307 e~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil 338 (417)
+.++++|..+.++++.+...+..+|..| |.|
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL-DlL 33 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL-DML 33 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3457788889999999999999999864 543
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.28 E-value=92 Score=20.25 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHH
Q 014854 299 VLDLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 299 veeL~~~le~Le~gle~Le~~Vd~l 323 (417)
|..|..++|.|-..-..|+.+|+.+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444555555556666666655
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.07 E-value=2.9e+02 Score=23.36 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 014854 265 VLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (417)
Q Consensus 265 ~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 322 (417)
...+++..+..+..|+..+.+ ...+.+.+...++++++....|+.-+-.||..++.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~--~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIA--AQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 29
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=23.85 E-value=2.6e+02 Score=22.16 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 014854 288 DTVEEELLQKSVLDLGKRADN 308 (417)
Q Consensus 288 ~~e~~e~v~~~veeL~~~le~ 308 (417)
..++.+.+...+++++.+++.
T Consensus 35 ~~eek~~i~~~i~e~~~wL~~ 55 (113)
T 3lof_A 35 SEADKKKVLDKCQEVISWLDA 55 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 334455566667777666644
No 30
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=23.27 E-value=98 Score=26.73 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 014854 290 VEEELLQKSVLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 290 e~~e~v~~~veeL~~~le~Le~gle~Le~~V 320 (417)
+++...+.+++.|-+++++ ...+|.|+..|
T Consensus 26 ~~e~~~~kai~sLvKkLK~-~~~Le~L~~AV 55 (144)
T 1ozj_A 26 QEEKWCEKAVKSLVKKLKK-TGQLDELEKAI 55 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 4555677788888777776 55666654443
No 31
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.04 E-value=98 Score=20.02 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhchHHHHHHHhHH
Q 014854 301 DLGKRADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 301 eL~~~le~Le~gle~Le~~Vd~l 323 (417)
.|..++|.|-....+|+.+|..+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444455555566665554
No 32
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=22.91 E-value=1.5e+02 Score=20.85 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH--hhchHHHHHHHhHHHHHHHHhHH
Q 014854 296 QKSVLDLGKRADNL--SQGLDHLTKAVDGFFKIVLSGRD 332 (417)
Q Consensus 296 ~~~veeL~~~le~L--e~gle~Le~~Vd~lFr~LI~~R~ 332 (417)
.+..+||.+.+|+| |.|-|++...++.+.|+--.-|.
T Consensus 11 gdrldelekalealsaedghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 11 GDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp HHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccc
Confidence 35678888888887 57888988888888887665554
No 33
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.82 E-value=1.5e+02 Score=22.42 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHh
Q 014854 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSG 330 (417)
Q Consensus 293 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~ 330 (417)
+.++..++.|+...+.+.+.++.+|++=|-.|..|-..
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdi 42 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNI 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566677777777777777777887777777766544
No 34
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.80 E-value=50 Score=21.80 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=7.5
Q ss_pred HHHHhhchHHHHHHHhHH
Q 014854 306 ADNLSQGLDHLTKAVDGF 323 (417)
Q Consensus 306 le~Le~gle~Le~~Vd~l 323 (417)
+|.|...-.+|+.+|..+
T Consensus 10 VEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333334444444443
No 35
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.56 E-value=75 Score=21.84 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHH
Q 014854 299 VLDLGKRADNLSQGLDHLTKAV 320 (417)
Q Consensus 299 veeL~~~le~Le~gle~Le~~V 320 (417)
=++|.+++..||..+|.|.+++
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 36
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.24 E-value=2e+02 Score=22.69 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhc
Q 014854 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 339 (417)
Q Consensus 295 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LLnil~ 339 (417)
+.++++.|.+..+.++..|+.|+++.+.+=..+-..+..|=..+.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345567777777777777777777777777777777777766663
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.84 E-value=4.2e+02 Score=24.20 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 014854 294 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (417)
Q Consensus 294 ~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 327 (417)
.....+++++..++.++..++.....++.-...+
T Consensus 122 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 122 RKSEKQEDLKKEMLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444
No 38
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.63 E-value=3.7e+02 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=17.0
Q ss_pred hhchHHHHHHHhHHHHHHHHhHHHH
Q 014854 310 SQGLDHLTKAVDGFFKIVLSGRDAL 334 (417)
Q Consensus 310 e~gle~Le~~Vd~lFr~LI~~R~~L 334 (417)
...|..|.+++..+..-++.+|.+|
T Consensus 59 ~~aL~~L~~q~Tslr~~~LQNRraL 83 (125)
T 4g2k_A 59 AKSLELLLRVTTEERTFSLINRHAI 83 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777753
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.55 E-value=4.4e+02 Score=25.91 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 014854 239 WAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTK 318 (417)
Q Consensus 239 Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~ 318 (417)
+......||+++.+--+ .+.++++=.+.-..-...++...+.+.....+ +|+|+...+..|+.-|++++.
T Consensus 395 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQK---------GFQDVEAQAATANHTVMALMASLDAEKAQGQK-KVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhh---------hHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHH
Q 014854 319 AVDGF 323 (417)
Q Consensus 319 ~Vd~l 323 (417)
+|+++
T Consensus 465 ~~~~~ 469 (471)
T 3mq9_A 465 EVERL 469 (471)
T ss_dssp HHHHH
T ss_pred HHHHh
No 40
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.21 E-value=1.3e+02 Score=21.67 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhH
Q 014854 298 SVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGR 331 (417)
Q Consensus 298 ~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R 331 (417)
.+++|...++.|+..-+.|..+|..|-..+..-+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444333
No 41
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=20.12 E-value=14 Score=25.37 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=16.0
Q ss_pred CCcceehhhhhhhhhhhhccc
Q 014854 387 PACYGVHCVNLLGFLRCSCLC 407 (417)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~ 407 (417)
..|.. .|+|..|..+|+|.=
T Consensus 20 ~~C~~-~C~n~~Gsy~C~C~~ 39 (53)
T 1apq_A 20 PQCQH-LCHNYVGGYFCSCRP 39 (53)
T ss_dssp CTTSS-EEEEETTEEEEECST
T ss_pred CCCCC-EeECCCCCeEEECCC
Confidence 45775 799999999998853
Done!