Query 014855
Match_columns 417
No_of_seqs 437 out of 3150
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 4E-25 8.6E-30 203.6 9.2 106 80-207 159-266 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.9 1.5E-22 3.2E-27 186.6 9.2 127 77-222 125-257 (279)
3 KOG3576 Ovo and related transc 99.8 4.6E-19 1E-23 155.8 4.2 113 78-210 113-238 (267)
4 KOG1074 Transcriptional repres 99.7 1.4E-17 3.1E-22 172.2 1.2 82 123-211 605-695 (958)
5 KOG1074 Transcriptional repres 99.6 2.5E-16 5.4E-21 163.0 4.3 58 159-216 880-939 (958)
6 KOG3623 Homeobox transcription 99.6 1E-15 2.2E-20 156.0 5.4 107 82-206 210-331 (1007)
7 KOG3608 Zn finger proteins [Ge 99.5 3.4E-14 7.4E-19 134.6 4.4 147 55-208 180-345 (467)
8 KOG3623 Homeobox transcription 99.5 2.9E-14 6.2E-19 145.6 4.1 81 80-180 892-972 (1007)
9 KOG3576 Ovo and related transc 99.4 2.7E-14 5.8E-19 126.0 1.0 82 120-208 114-197 (267)
10 KOG3608 Zn finger proteins [Ge 99.3 1.6E-12 3.4E-17 123.4 5.1 126 76-209 231-377 (467)
11 PLN03086 PRLI-interacting fact 99.2 1.5E-11 3.2E-16 126.8 8.4 104 80-209 451-565 (567)
12 PHA00733 hypothetical protein 99.0 1.8E-10 3.9E-15 97.8 3.9 84 120-211 37-126 (128)
13 PHA00733 hypothetical protein 99.0 5.2E-10 1.1E-14 95.0 5.3 97 67-182 25-124 (128)
14 PHA02768 hypothetical protein; 98.7 4.9E-09 1.1E-13 74.3 1.4 42 124-174 6-47 (55)
15 PLN03086 PRLI-interacting fact 98.7 4.1E-08 8.9E-13 101.6 8.7 127 81-220 406-553 (567)
16 PHA02768 hypothetical protein; 98.6 1.8E-08 3.9E-13 71.4 2.3 44 158-202 5-49 (55)
17 KOG3993 Transcription factor ( 98.6 1.4E-08 3E-13 99.0 1.3 79 82-180 267-378 (500)
18 PF13465 zf-H2C2_2: Zinc-finge 98.5 5.5E-08 1.2E-12 58.8 2.0 26 145-170 1-26 (26)
19 KOG3993 Transcription factor ( 98.4 9.4E-08 2E-12 93.4 1.2 85 122-213 266-385 (500)
20 PHA00616 hypothetical protein 98.0 3.2E-06 7E-11 57.1 1.6 26 137-162 8-33 (44)
21 COG5189 SFP1 Putative transcri 97.9 3.2E-06 6.9E-11 79.9 1.0 28 120-152 346-373 (423)
22 PHA00732 hypothetical protein 97.9 8.8E-06 1.9E-10 63.0 2.9 22 83-104 2-23 (79)
23 COG5189 SFP1 Putative transcri 97.9 1.1E-05 2.3E-10 76.5 3.8 25 79-103 346-372 (423)
24 PHA00732 hypothetical protein 97.8 1.8E-05 3.9E-10 61.3 3.1 45 123-180 1-46 (79)
25 PF13465 zf-H2C2_2: Zinc-finge 97.7 1.6E-05 3.4E-10 48.0 1.7 25 97-141 1-25 (26)
26 PHA00616 hypothetical protein 97.7 1.2E-05 2.6E-10 54.4 1.0 32 158-189 1-33 (44)
27 PF00096 zf-C2H2: Zinc finger, 97.7 2.6E-05 5.7E-10 45.4 2.0 23 83-105 1-23 (23)
28 PF05605 zf-Di19: Drought indu 97.6 7E-05 1.5E-09 53.7 4.0 52 82-154 2-53 (54)
29 PF13894 zf-C2H2_4: C2H2-type 97.3 0.00018 3.8E-09 41.9 2.3 24 83-106 1-24 (24)
30 PF05605 zf-Di19: Drought indu 97.3 0.00043 9.2E-09 49.6 4.2 47 124-180 3-51 (54)
31 PF00096 zf-C2H2: Zinc finger, 97.2 0.00016 3.4E-09 42.1 1.6 21 159-179 1-21 (23)
32 PF12756 zf-C2H2_2: C2H2 type 97.2 0.00027 5.9E-09 56.7 2.7 72 84-180 1-72 (100)
33 PF13912 zf-C2H2_6: C2H2-type 97.1 0.00033 7.3E-09 42.4 2.0 25 82-106 1-25 (27)
34 KOG2231 Predicted E3 ubiquitin 96.9 0.00097 2.1E-08 70.4 4.6 40 137-180 189-234 (669)
35 PF12756 zf-C2H2_2: C2H2 type 96.8 0.00073 1.6E-08 54.1 2.2 73 125-208 1-74 (100)
36 PF13894 zf-C2H2_4: C2H2-type 96.8 0.00086 1.9E-08 38.9 1.8 22 159-180 1-22 (24)
37 PF13912 zf-C2H2_6: C2H2-type 96.7 0.001 2.2E-08 40.3 1.7 24 185-208 1-25 (27)
38 smart00355 ZnF_C2H2 zinc finge 96.4 0.0022 4.7E-08 37.7 1.7 24 83-106 1-24 (26)
39 KOG1146 Homeobox protein [Gene 96.3 0.003 6.5E-08 70.5 3.9 121 80-207 463-641 (1406)
40 PRK04860 hypothetical protein; 96.1 0.0033 7.1E-08 55.4 2.3 27 143-169 128-154 (160)
41 PF09237 GAGA: GAGA factor; I 96.0 0.004 8.7E-08 43.2 1.8 31 155-185 21-52 (54)
42 PF12874 zf-met: Zinc-finger o 96.0 0.0046 1E-07 36.5 1.7 23 83-105 1-23 (25)
43 COG5048 FOG: Zn-finger [Genera 95.9 0.011 2.3E-07 59.6 5.1 145 54-203 289-464 (467)
44 PF09237 GAGA: GAGA factor; I 95.7 0.014 2.9E-07 40.6 3.2 30 77-106 19-48 (54)
45 PRK04860 hypothetical protein; 95.5 0.008 1.7E-07 53.0 2.1 38 157-198 118-157 (160)
46 smart00355 ZnF_C2H2 zinc finge 95.4 0.0082 1.8E-07 35.1 1.3 22 186-207 1-23 (26)
47 COG5236 Uncharacterized conser 95.3 0.014 3.1E-07 56.3 3.2 111 82-206 151-303 (493)
48 KOG1146 Homeobox protein [Gene 94.9 0.0059 1.3E-07 68.3 -0.6 54 120-180 462-540 (1406)
49 COG5048 FOG: Zn-finger [Genera 94.7 0.041 8.9E-07 55.4 4.8 107 81-207 288-411 (467)
50 PF12171 zf-C2H2_jaz: Zinc-fin 94.6 0.0088 1.9E-07 36.2 -0.1 23 83-105 2-24 (27)
51 PF12874 zf-met: Zinc-finger o 94.1 0.027 6E-07 33.1 1.3 21 159-179 1-21 (25)
52 KOG4173 Alpha-SNAP protein [In 93.5 0.026 5.6E-07 50.8 0.6 81 120-208 76-170 (253)
53 PF13909 zf-H2C2_5: C2H2-type 93.4 0.051 1.1E-06 31.7 1.5 23 83-106 1-23 (24)
54 KOG2231 Predicted E3 ubiquitin 93.2 0.083 1.8E-06 56.2 3.8 62 122-188 205-274 (669)
55 PF13909 zf-H2C2_5: C2H2-type 93.0 0.072 1.6E-06 31.0 1.8 16 137-153 7-22 (24)
56 PF12171 zf-C2H2_jaz: Zinc-fin 92.7 0.029 6.4E-07 33.8 -0.2 22 159-180 2-23 (27)
57 KOG2785 C2H2-type Zn-finger pr 91.6 0.33 7.2E-06 47.9 5.5 118 82-206 3-242 (390)
58 smart00451 ZnF_U1 U1-like zinc 91.1 0.16 3.5E-06 32.3 1.9 24 82-105 3-26 (35)
59 PF13913 zf-C2HC_2: zinc-finge 90.0 0.24 5.1E-06 29.4 1.8 21 83-104 3-23 (25)
60 PF13913 zf-C2HC_2: zinc-finge 89.5 0.3 6.5E-06 29.0 1.9 19 160-179 4-22 (25)
61 COG5236 Uncharacterized conser 89.2 0.4 8.7E-06 46.6 3.7 78 84-182 222-306 (493)
62 smart00451 ZnF_U1 U1-like zinc 87.0 0.41 9E-06 30.3 1.6 23 158-180 3-25 (35)
63 KOG2893 Zn finger protein [Gen 86.6 0.2 4.4E-06 46.2 -0.1 23 84-106 12-34 (341)
64 KOG2482 Predicted C2H2-type Zn 86.2 1.5 3.4E-05 42.7 5.6 81 122-208 143-303 (423)
65 KOG2482 Predicted C2H2-type Zn 85.6 0.77 1.7E-05 44.7 3.3 78 123-207 195-357 (423)
66 COG4049 Uncharacterized protei 84.9 0.42 9.2E-06 33.8 0.9 27 154-180 13-39 (65)
67 KOG4173 Alpha-SNAP protein [In 83.8 0.52 1.1E-05 42.6 1.2 79 79-180 76-168 (253)
68 TIGR00622 ssl1 transcription f 83.2 1.7 3.7E-05 35.8 3.9 48 160-208 57-105 (112)
69 KOG2186 Cell growth-regulating 82.8 0.97 2.1E-05 42.3 2.6 45 159-205 4-49 (276)
70 COG4049 Uncharacterized protei 82.6 0.65 1.4E-05 32.9 1.1 32 75-106 10-41 (65)
71 KOG4167 Predicted DNA-binding 81.5 1.6 3.4E-05 46.7 3.9 27 80-106 790-816 (907)
72 PF12013 DUF3505: Protein of u 81.4 2.1 4.6E-05 35.1 3.9 23 186-208 81-108 (109)
73 KOG2893 Zn finger protein [Gen 80.8 0.5 1.1E-05 43.6 0.0 42 125-177 12-53 (341)
74 PF09986 DUF2225: Uncharacteri 78.6 0.58 1.3E-05 43.4 -0.3 41 157-197 4-61 (214)
75 PF02892 zf-BED: BED zinc fing 75.7 2.5 5.5E-05 28.4 2.3 26 78-103 12-41 (45)
76 cd00350 rubredoxin_like Rubred 73.6 2.4 5.1E-05 26.8 1.6 10 157-166 16-25 (33)
77 PF09538 FYDLN_acid: Protein o 73.1 2.1 4.6E-05 35.2 1.6 14 157-170 25-38 (108)
78 KOG4377 Zn-finger protein [Gen 72.3 1.8 4E-05 43.2 1.2 120 81-210 270-429 (480)
79 KOG2071 mRNA cleavage and poly 71.9 2.4 5.2E-05 44.5 2.1 30 77-106 413-442 (579)
80 PF04959 ARS2: Arsenite-resist 71.5 1.5 3.2E-05 40.6 0.4 30 155-184 74-104 (214)
81 PF12013 DUF3505: Protein of u 68.4 10 0.00022 30.9 4.8 24 159-182 81-109 (109)
82 PF13717 zinc_ribbon_4: zinc-r 67.5 4 8.6E-05 26.4 1.7 12 160-171 4-15 (36)
83 KOG4124 Putative transcription 67.2 0.99 2.1E-05 44.1 -1.7 28 77-105 208-236 (442)
84 smart00614 ZnF_BED BED zinc fi 66.5 4.3 9.4E-05 28.2 1.9 26 81-106 17-48 (50)
85 PF02892 zf-BED: BED zinc fing 66.3 4.8 0.0001 27.0 2.0 23 156-178 14-40 (45)
86 PF13719 zinc_ribbon_5: zinc-r 65.8 4.4 9.6E-05 26.3 1.7 12 157-168 24-35 (37)
87 KOG2785 C2H2-type Zn-finger pr 65.3 13 0.00029 37.0 5.5 75 81-180 165-242 (390)
88 KOG2186 Cell growth-regulating 65.1 4.1 8.8E-05 38.3 1.9 50 83-155 4-53 (276)
89 PRK00464 nrdR transcriptional 62.3 1.8 3.9E-05 37.9 -0.9 15 159-173 29-43 (154)
90 COG1997 RPL43A Ribosomal prote 61.0 3.4 7.3E-05 32.3 0.5 12 158-169 53-64 (89)
91 TIGR02300 FYDLN_acid conserved 59.4 6 0.00013 33.3 1.7 14 184-197 25-39 (129)
92 PF05443 ROS_MUCR: ROS/MUCR tr 59.3 8.7 0.00019 32.8 2.7 26 78-106 68-93 (132)
93 smart00531 TFIIE Transcription 58.4 15 0.00033 31.7 4.2 14 157-170 98-111 (147)
94 COG1592 Rubrerythrin [Energy p 58.1 7.2 0.00016 34.6 2.1 24 122-165 133-156 (166)
95 PF09538 FYDLN_acid: Protein o 57.7 5.8 0.00013 32.6 1.4 30 158-197 9-39 (108)
96 TIGR02098 MJ0042_CXXC MJ0042 f 56.1 8.6 0.00019 24.8 1.8 16 83-98 3-18 (38)
97 TIGR00373 conserved hypothetic 55.4 11 0.00024 33.1 2.8 18 157-174 108-125 (158)
98 KOG2593 Transcription initiati 53.9 13 0.00029 37.7 3.4 37 155-193 125-162 (436)
99 PRK06266 transcription initiat 53.1 11 0.00023 34.0 2.4 17 157-173 116-132 (178)
100 PF09986 DUF2225: Uncharacteri 52.4 3.6 7.9E-05 38.1 -0.7 44 121-171 3-61 (214)
101 COG1996 RPC10 DNA-directed RNA 52.1 7.4 0.00016 27.1 0.9 10 157-166 23-32 (49)
102 COG4957 Predicted transcriptio 52.1 13 0.00028 31.6 2.5 25 79-106 73-97 (148)
103 COG1592 Rubrerythrin [Energy p 52.0 7.7 0.00017 34.4 1.3 24 157-192 133-157 (166)
104 PRK04023 DNA polymerase II lar 50.7 13 0.00027 41.8 2.9 12 80-91 624-635 (1121)
105 TIGR00622 ssl1 transcription f 50.3 21 0.00046 29.4 3.5 85 82-180 15-103 (112)
106 TIGR01562 FdhE formate dehydro 49.9 7.8 0.00017 37.9 1.1 14 120-133 207-220 (305)
107 KOG4124 Putative transcription 49.7 4.7 0.0001 39.5 -0.4 27 77-103 344-372 (442)
108 cd00729 rubredoxin_SM Rubredox 48.3 14 0.0003 23.6 1.7 10 157-166 17-26 (34)
109 KOG4377 Zn-finger protein [Gen 47.9 69 0.0015 32.4 7.2 68 120-195 268-360 (480)
110 KOG1280 Uncharacterized conser 47.0 7.7 0.00017 38.1 0.5 32 156-187 77-109 (381)
111 COG1198 PriA Primosomal protei 47.0 15 0.00033 40.3 2.8 13 155-167 472-484 (730)
112 smart00531 TFIIE Transcription 46.4 12 0.00026 32.4 1.7 39 120-169 96-134 (147)
113 PF09416 UPF1_Zn_bind: RNA hel 46.4 17 0.00036 31.7 2.4 24 157-180 13-42 (152)
114 PF11931 DUF3449: Domain of un 46.1 9 0.0002 34.9 0.8 30 74-103 93-123 (196)
115 KOG2932 E3 ubiquitin ligase in 45.8 3E+02 0.0065 27.0 10.9 81 114-208 81-171 (389)
116 COG5151 SSL1 RNA polymerase II 45.8 22 0.00047 34.5 3.3 47 161-208 365-412 (421)
117 PRK00398 rpoP DNA-directed RNA 45.0 15 0.00033 24.9 1.7 13 82-94 3-15 (46)
118 KOG1924 RhoA GTPase effector D 44.7 83 0.0018 34.6 7.6 9 77-85 153-161 (1102)
119 PF14353 CpXC: CpXC protein 44.7 20 0.00044 30.0 2.7 21 184-204 37-58 (128)
120 PF09723 Zn-ribbon_8: Zinc rib 43.8 8.1 0.00018 25.8 0.1 17 81-97 4-20 (42)
121 PF15135 UPF0515: Uncharacteri 43.2 27 0.0006 32.8 3.5 77 94-197 91-168 (278)
122 COG2888 Predicted Zn-ribbon RN 42.9 21 0.00046 25.8 2.1 8 122-129 26-33 (61)
123 PRK06266 transcription initiat 42.4 15 0.00033 33.0 1.7 35 120-170 114-148 (178)
124 PRK03564 formate dehydrogenase 41.8 13 0.00027 36.5 1.2 38 80-133 185-222 (309)
125 TIGR00373 conserved hypothetic 41.7 34 0.00073 30.1 3.8 34 120-169 106-139 (158)
126 KOG2636 Splicing factor 3a, su 40.3 29 0.00062 35.4 3.4 30 74-103 393-423 (497)
127 TIGR02300 FYDLN_acid conserved 39.0 20 0.00043 30.2 1.7 35 123-175 9-43 (129)
128 COG3091 SprT Zn-dependent meta 38.9 14 0.00031 32.0 0.9 33 156-193 115-149 (156)
129 PF09845 DUF2072: Zn-ribbon co 38.7 13 0.00027 31.6 0.5 15 82-96 1-15 (131)
130 PRK09678 DNA-binding transcrip 38.7 9 0.00019 29.0 -0.3 39 159-198 2-43 (72)
131 KOG1924 RhoA GTPase effector D 38.7 65 0.0014 35.4 5.8 6 395-400 638-643 (1102)
132 COG1571 Predicted DNA-binding 38.3 19 0.0004 36.7 1.8 30 160-199 352-382 (421)
133 TIGR00280 L37a ribosomal prote 37.8 14 0.00031 29.2 0.7 10 159-168 54-63 (91)
134 smart00734 ZnF_Rad18 Rad18-lik 37.8 27 0.00058 20.8 1.7 19 160-179 3-21 (26)
135 COG3357 Predicted transcriptio 37.6 19 0.0004 28.4 1.3 32 81-135 57-88 (97)
136 PF15269 zf-C2H2_7: Zinc-finge 37.5 35 0.00075 23.2 2.3 26 79-104 17-42 (54)
137 KOG2807 RNA polymerase II tran 37.3 47 0.001 32.6 4.2 25 184-208 344-369 (378)
138 PF04959 ARS2: Arsenite-resist 36.7 16 0.00035 33.8 0.9 32 119-157 73-104 (214)
139 smart00659 RPOLCX RNA polymera 36.1 28 0.00062 23.6 1.9 11 157-167 18-28 (44)
140 COG1198 PriA Primosomal protei 35.8 26 0.00056 38.6 2.4 29 151-193 455-484 (730)
141 PRK14890 putative Zn-ribbon RN 35.7 34 0.00073 24.8 2.2 8 122-129 24-31 (59)
142 smart00834 CxxC_CXXC_SSSS Puta 35.2 13 0.00029 24.2 0.1 11 157-167 25-35 (41)
143 TIGR02605 CxxC_CxxC_SSSS putat 35.2 13 0.00029 25.8 0.1 10 157-166 25-34 (52)
144 PF13878 zf-C2H2_3: zinc-finge 34.7 31 0.00067 23.0 1.8 25 82-106 13-39 (41)
145 KOG2593 Transcription initiati 34.1 24 0.00053 35.8 1.8 38 77-130 123-160 (436)
146 COG3364 Zn-ribbon containing p 34.1 24 0.00051 28.5 1.4 15 82-96 2-16 (112)
147 PF06524 NOA36: NOA36 protein; 33.5 34 0.00075 32.4 2.5 24 79-103 139-162 (314)
148 smart00440 ZnF_C2C2 C2C2 Zinc 32.6 11 0.00024 24.9 -0.6 10 159-168 29-38 (40)
149 PRK03976 rpl37ae 50S ribosomal 32.1 18 0.00039 28.6 0.4 10 159-168 55-64 (90)
150 PRK00464 nrdR transcriptional 32.0 26 0.00057 30.7 1.5 19 81-99 27-45 (154)
151 PF01780 Ribosomal_L37ae: Ribo 31.8 18 0.00038 28.7 0.3 10 159-168 54-63 (90)
152 KOG2807 RNA polymerase II tran 31.6 70 0.0015 31.4 4.3 20 82-101 290-309 (378)
153 PF13451 zf-trcl: Probable zin 31.1 28 0.00062 24.2 1.2 13 157-169 3-15 (49)
154 PRK14873 primosome assembly pr 30.9 36 0.00079 37.1 2.7 9 158-166 422-430 (665)
155 PTZ00255 60S ribosomal protein 30.9 24 0.00052 27.9 0.9 12 158-169 54-65 (90)
156 KOG0320 Predicted E3 ubiquitin 30.7 68 0.0015 28.7 3.8 17 79-95 128-144 (187)
157 PF15269 zf-C2H2_7: Zinc-finge 30.5 34 0.00073 23.3 1.4 22 159-180 21-42 (54)
158 PRK14714 DNA polymerase II lar 30.4 42 0.00092 38.8 3.1 9 83-91 668-676 (1337)
159 PF05290 Baculo_IE-1: Baculovi 30.4 46 0.00099 28.3 2.5 20 79-98 77-96 (140)
160 COG2331 Uncharacterized protei 29.8 26 0.00056 26.7 0.9 23 77-103 7-29 (82)
161 PF11789 zf-Nse: Zinc-finger o 28.1 44 0.00096 24.0 1.8 35 80-131 22-56 (57)
162 PF14446 Prok-RING_1: Prokaryo 28.1 58 0.0013 23.2 2.4 13 82-94 5-17 (54)
163 KOG3408 U1-like Zn-finger-cont 27.9 40 0.00087 28.1 1.8 29 77-105 52-80 (129)
164 PF07754 DUF1610: Domain of un 27.7 28 0.0006 20.5 0.6 10 81-90 15-24 (24)
165 PF05443 ROS_MUCR: ROS/MUCR tr 27.6 40 0.00086 28.8 1.8 25 122-156 71-95 (132)
166 PF04216 FdhE: Protein involve 27.6 21 0.00045 34.7 0.0 52 120-192 194-246 (290)
167 PF03604 DNA_RNApol_7kD: DNA d 27.5 29 0.00063 21.9 0.7 10 158-167 17-26 (32)
168 KOG0978 E3 ubiquitin ligase in 27.1 19 0.00041 39.0 -0.3 18 184-201 677-695 (698)
169 KOG3648 Golgi apparatus protei 27.0 23 0.0005 37.7 0.3 6 270-275 86-91 (1179)
170 PHA00626 hypothetical protein 26.0 35 0.00075 24.4 0.9 17 80-96 21-37 (59)
171 COG4530 Uncharacterized protei 25.8 46 0.00099 27.3 1.7 13 156-168 24-36 (129)
172 smart00731 SprT SprT homologue 25.6 25 0.00055 30.3 0.2 31 158-194 112-143 (146)
173 PRK14873 primosome assembly pr 25.5 49 0.0011 36.2 2.4 27 152-193 404-431 (665)
174 PF08274 PhnA_Zn_Ribbon: PhnA 25.3 45 0.00097 20.7 1.2 9 158-166 19-27 (30)
175 COG5188 PRP9 Splicing factor 3 25.3 39 0.00085 33.4 1.5 30 74-103 366-396 (470)
176 KOG2071 mRNA cleavage and poly 25.2 39 0.00085 35.8 1.6 28 120-154 415-442 (579)
177 TIGR00595 priA primosomal prot 24.9 59 0.0013 34.3 2.9 11 156-166 251-261 (505)
178 COG3091 SprT Zn-dependent meta 24.7 39 0.00084 29.4 1.2 33 79-129 114-146 (156)
179 TIGR01206 lysW lysine biosynth 24.6 42 0.00091 23.9 1.2 10 159-168 3-12 (54)
180 PF12760 Zn_Tnp_IS1595: Transp 24.3 88 0.0019 21.1 2.7 11 156-166 35-45 (46)
181 PRK04351 hypothetical protein; 24.2 42 0.00092 29.2 1.4 32 158-196 112-144 (149)
182 PF04810 zf-Sec23_Sec24: Sec23 23.3 18 0.00039 23.8 -0.8 18 150-167 16-33 (40)
183 KOG0696 Serine/threonine prote 22.9 31 0.00068 35.2 0.3 37 122-165 91-128 (683)
184 PF11494 Ta0938: Ta0938; Inte 22.9 25 0.00054 28.0 -0.3 38 155-197 11-50 (105)
185 KOG0978 E3 ubiquitin ligase in 22.8 37 0.0008 36.9 0.9 22 156-177 676-697 (698)
186 smart00154 ZnF_AN1 AN1-like Zi 22.7 42 0.00092 22.0 0.8 14 82-95 12-25 (39)
187 COG1571 Predicted DNA-binding 21.9 51 0.0011 33.7 1.6 20 155-174 364-383 (421)
188 KOG4407 Predicted Rho GTPase-a 21.8 37 0.0008 39.3 0.7 68 210-277 261-377 (1973)
189 PF02176 zf-TRAF: TRAF-type zi 21.8 59 0.0013 22.9 1.6 35 80-128 7-43 (60)
190 KOG1280 Uncharacterized conser 21.4 88 0.0019 31.0 3.0 27 79-105 76-102 (381)
191 PF06220 zf-U1: U1 zinc finger 21.1 66 0.0014 21.0 1.5 23 81-103 2-26 (38)
192 PF03145 Sina: Seven in absent 21.0 1.1E+02 0.0023 27.7 3.5 55 82-157 14-74 (198)
193 KOG2636 Splicing factor 3a, su 20.8 67 0.0014 32.9 2.1 30 151-180 394-424 (497)
194 PF10571 UPF0547: Uncharacteri 20.8 51 0.0011 19.7 0.8 10 160-169 16-25 (26)
195 COG4888 Uncharacterized Zn rib 20.7 27 0.00058 28.1 -0.5 16 79-94 19-34 (104)
196 PTZ00448 hypothetical protein; 20.6 97 0.0021 31.0 3.2 25 81-105 313-337 (373)
197 PF05191 ADK_lid: Adenylate ki 20.2 43 0.00092 21.7 0.4 10 159-168 22-31 (36)
198 COG1107 Archaea-specific RecJ- 20.2 76 0.0017 33.8 2.5 15 84-98 20-35 (715)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.92 E-value=4e-25 Score=203.55 Aligned_cols=106 Identities=25% Similarity=0.513 Sum_probs=88.5
Q ss_pred CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCcc
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW 159 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~ 159 (417)
.+.|.|++|||.|.+...|+.|+|+|+ .+++|.+| ||.|.+.+-|+.|+|+|+|||||
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~iC-------GKaFSRPWLLQGHiRTHTGEKPF 216 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECGIC-------GKAFSRPWLLQGHIRTHTGEKPF 216 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC---------------CCcccccc-------cccccchHHhhcccccccCCCCc
Confidence 344555555555555555555555543 67889998 99999999999999999999999
Q ss_pred ccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCCchHHHHHHhhc
Q 014855 160 KCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC 207 (417)
Q Consensus 160 ~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~~~~L~~H~~~h 207 (417)
.|..|+|+|..+++|+.||++ .+.|.|.|. |+|+|.+++.|.+|....
T Consensus 217 ~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 217 SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence 999999999999999999999 688999999 999999999999998754
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.87 E-value=1.5e-22 Score=186.63 Aligned_cols=127 Identities=20% Similarity=0.471 Sum_probs=113.8
Q ss_pred cCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCC
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE 156 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~e 156 (417)
.....+|+|..|||.|.+..+|.+|+.+|.. ....+.+.|++| +|.|.....|+.|+|+|+
T Consensus 125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~----------~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~-- 185 (279)
T KOG2462|consen 125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRS----------LDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT-- 185 (279)
T ss_pred cccCCceeccccccccccccccchhhccccc----------ccccccccCCCC-------CceeeehHHHhhHhhccC--
Confidence 3456689999999999999999999999962 124688999999 999999999999999998
Q ss_pred CccccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCCchHHHHHHhhcc----ccccccCccccCCC
Q 014855 157 KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD----VLAEESARTITVNP 222 (417)
Q Consensus 157 kp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~~~~L~~H~~~h~----~~~~~~~~~~~~~~ 222 (417)
-+++|.+|||.|.+.+.|..|+|+ +|||||.|. |+|.|..+++|+.|+++|. ..|..|++.|....
T Consensus 186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~S 257 (279)
T KOG2462|consen 186 LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKS 257 (279)
T ss_pred CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHH
Confidence 679999999999999999999999 999999999 9999999999999999985 66777888776533
No 3
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.75 E-value=4.6e-19 Score=155.81 Aligned_cols=113 Identities=24% Similarity=0.528 Sum_probs=105.1
Q ss_pred CCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCC
Q 014855 78 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK 157 (417)
Q Consensus 78 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ek 157 (417)
.+...|.|.+|+|.|.....|.+|++.|. ..|.|.|..| ||.|.+.-.|++|+|+|+|.+
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr 172 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR 172 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence 44578999999999999999999999998 7889999999 999999999999999999999
Q ss_pred ccccCcCCccccChhhHHHHHHH-hC-----------CCceeec-CCCccCCchHHHHHHhhcccc
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKI-CG-----------TREYKCD-CGKLFSRRDSFITHRAFCDVL 210 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~-~~-----------ekp~~C~-C~k~F~~~~~L~~H~~~h~~~ 210 (417)
||+|..|+|+|..+-.|..|++. || +|.|.|+ ||.+-.+...+..|++.|+..
T Consensus 173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence 99999999999999999999987 75 4789999 999999999999999998743
No 4
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.66 E-value=1.4e-17 Score=172.15 Aligned_cols=82 Identities=21% Similarity=0.437 Sum_probs=73.1
Q ss_pred eeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHHhCCCc-----eeec----CCCc
Q 014855 123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTRE-----YKCD----CGKL 193 (417)
Q Consensus 123 ~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp-----~~C~----C~k~ 193 (417)
+..|-+| .|++.-++.|+.|+|+|+|||||+|++||++|.++.+|+.|+.+|..|| |.|. |-+.
T Consensus 605 PNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~k 677 (958)
T KOG1074|consen 605 PNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKK 677 (958)
T ss_pred ccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccc
Confidence 3568777 9999999999999999999999999999999999999999999987665 7784 8999
Q ss_pred cCCchHHHHHHhhccccc
Q 014855 194 FSRRDSFITHRAFCDVLA 211 (417)
Q Consensus 194 F~~~~~L~~H~~~h~~~~ 211 (417)
|...-.|..|++.|....
T Consensus 678 ftn~V~lpQhIriH~~~~ 695 (958)
T KOG1074|consen 678 FTNAVTLPQHIRIHLGGQ 695 (958)
T ss_pred ccccccccceEEeecCCC
Confidence 999999999999986433
No 5
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.61 E-value=2.5e-16 Score=163.02 Aligned_cols=58 Identities=21% Similarity=0.499 Sum_probs=52.8
Q ss_pred cccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCCchHHHHHHhhccccccccCc
Q 014855 159 WKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVLAEESAR 216 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~ 216 (417)
..|.+|||.|.....|..|+|+ +|+|||.|. |++.|..+.+|+.||.+|+-......+
T Consensus 880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr 939 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR 939 (958)
T ss_pred hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence 5699999999999999999999 899999999 999999999999999999866555544
No 6
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.58 E-value=1e-15 Score=155.96 Aligned_cols=107 Identities=24% Similarity=0.536 Sum_probs=95.9
Q ss_pred ceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhcc-------
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH------- 154 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~------- 154 (417)
...|.+|.+.|.+...|+.|++.-+.. .+.-|.|..| ...|..+..|.+||.+|.
T Consensus 210 lltcpycdrgykrltslkeHikyrhek-----------ne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~ 271 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHEK-----------NEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAI 271 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhh-----------CCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCcccc
Confidence 468999999999999999998754411 4566899999 999999999999999986
Q ss_pred ------CCCccccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCCchHHHHHHhh
Q 014855 155 ------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAF 206 (417)
Q Consensus 155 ------~ekp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~~~~L~~H~~~ 206 (417)
+.|.|+|.+|||+|+.+.+|+.|+|+ .|||||.|. |+|+|+...++..||..
T Consensus 272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence 24889999999999999999999999 899999999 99999999999999854
No 7
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.46 E-value=3.4e-14 Score=134.61 Aligned_cols=147 Identities=15% Similarity=0.281 Sum_probs=105.1
Q ss_pred cCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcC----CCccccccccccc-----------
Q 014855 55 KKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN----LPWKLKQRTNKVE----------- 119 (417)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~----~p~~~~~~~~~~~----------- 119 (417)
-+...+-.....+..+..+.+.|+++|...|+.||..|.++..|--|.+.-+ .+|.|+.+.+...
T Consensus 180 C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~r 259 (467)
T KOG3608|consen 180 CNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVR 259 (467)
T ss_pred ccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHH
Confidence 3444555566778888899999999999999999999999999888876554 4666765433221
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhh-ccCCCccccCcCCccccChhhHHHHHHHhCCCceeec---CCCccC
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD---CGKLFS 195 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~-H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~---C~k~F~ 195 (417)
....|+|+.| +......+.|.+|++. |..+|||+|+.|++.|.+.+.|.+|..+|.+-.|.|+ |...|+
T Consensus 260 Hvn~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r 332 (467)
T KOG3608|consen 260 HVNCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVR 332 (467)
T ss_pred hhhccccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHH
Confidence 2245778777 7777777778888773 6667888888888888888888777776655566663 666666
Q ss_pred CchHHHHHHhhcc
Q 014855 196 RRDSFITHRAFCD 208 (417)
Q Consensus 196 ~~~~L~~H~~~h~ 208 (417)
....+++|++.++
T Consensus 333 ~~~q~~~H~~evh 345 (467)
T KOG3608|consen 333 TYTQMRRHFLEVH 345 (467)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665554
No 8
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.46 E-value=2.9e-14 Score=145.60 Aligned_cols=81 Identities=25% Similarity=0.588 Sum_probs=65.0
Q ss_pred CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCcc
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW 159 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~ 159 (417)
...|.|+.|+|.|...+.|.||.--|+ |.+||+|.+| .|+|+.+.+|..|+|.|.|||||
T Consensus 892 ~gmyaCDqCDK~FqKqSSLaRHKYEHs-------------GqRPyqC~iC-------kKAFKHKHHLtEHkRLHSGEKPf 951 (1007)
T KOG3623|consen 892 DGMYACDQCDKAFQKQSSLARHKYEHS-------------GQRPYQCIIC-------KKAFKHKHHLTEHKRLHSGEKPF 951 (1007)
T ss_pred cccchHHHHHHHHHhhHHHHHhhhhhc-------------CCCCcccchh-------hHhhhhhhhhhhhhhhccCCCcc
Confidence 446888888888888888888887777 7888888888 88888888888888888888888
Q ss_pred ccCcCCccccChhhHHHHHHH
Q 014855 160 KCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 160 ~C~~C~k~F~~~~~L~~H~~~ 180 (417)
.|+.|+|+|.....+..||..
T Consensus 952 QCdKClKRFSHSGSYSQHMNH 972 (1007)
T KOG3623|consen 952 QCDKCLKRFSHSGSYSQHMNH 972 (1007)
T ss_pred hhhhhhhhcccccchHhhhcc
Confidence 888888888887777777753
No 9
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.43 E-value=2.7e-14 Score=125.96 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=78.1
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCCc
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRR 197 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~~ 197 (417)
+...|.|.+| +|.|....-|.+|++-|...|.|-|..|||.|....+|++|+|+ +|.+||+|. |+|.|..+
T Consensus 114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr 186 (267)
T KOG3576|consen 114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR 186 (267)
T ss_pred CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence 5677999999 99999999999999999999999999999999999999999999 899999999 99999999
Q ss_pred hHHHHHHhhcc
Q 014855 198 DSFITHRAFCD 208 (417)
Q Consensus 198 ~~L~~H~~~h~ 208 (417)
.+|..|.++.|
T Consensus 187 csleshl~kvh 197 (267)
T KOG3576|consen 187 CSLESHLKKVH 197 (267)
T ss_pred ccHHHHHHHHc
Confidence 99999987655
No 10
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.31 E-value=1.6e-12 Score=123.43 Aligned_cols=126 Identities=21% Similarity=0.361 Sum_probs=108.2
Q ss_pred ccCCCCceecccccccccChHHHHHHHHhcCCCcccccc--------------cccccCCceeeCCCCCccCCCCCCccc
Q 014855 76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR--------------TNKVERKKVYVCPEPTCVHHDPSRALG 141 (417)
Q Consensus 76 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~--------------~~~~~~~k~~~C~~C~C~~~~~~k~f~ 141 (417)
.....++|.|..|.|.|.++..|+.|++.|..-|+|-.+ .-.|...|+|+|+.| ++.|.
T Consensus 231 t~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~C-------d~~c~ 303 (467)
T KOG3608|consen 231 TELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDEC-------DTRCV 303 (467)
T ss_pred hhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccch-------hhhhc
Confidence 345567999999999999999999999999877776421 123557899999999 99999
Q ss_pred CHHHHHHHHhhccCCCccccCc--CCccccChhhHHHHHHH-h-C--CCceeec-CCCccCCchHHHHHHhhccc
Q 014855 142 DLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-C-G--TREYKCD-CGKLFSRRDSFITHRAFCDV 209 (417)
Q Consensus 142 ~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~-~--ekp~~C~-C~k~F~~~~~L~~H~~~h~~ 209 (417)
+.+.|.+|...|. +..|.|+. |..+|+....+++|++. + | +-+|.|. |.+.|.+..+|.+|+...|.
T Consensus 304 ~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 304 RESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred cHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence 9999999999998 77899988 99999999999999998 5 3 3579999 99999999999999766553
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.24 E-value=1.5e-11 Score=126.83 Aligned_cols=104 Identities=22% Similarity=0.460 Sum_probs=89.6
Q ss_pred CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCcc
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW 159 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~ 159 (417)
++.+.|+.|++.|. ...|..|+++|+ +++.|+ | ++.+ .+..|..|+.+|..+|++
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi 505 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLI 505 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCce
Confidence 45678999999996 688999999886 679998 8 8655 668999999999999999
Q ss_pred ccCcCCcccc----------ChhhHHHHHHHhCCCceeec-CCCccCCchHHHHHHhhccc
Q 014855 160 KCEKCSKKYA----------VQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCDV 209 (417)
Q Consensus 160 ~C~~C~k~F~----------~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~L~~H~~~h~~ 209 (417)
.|..|++.|. ....|..|..++|.+++.|. ||+.|..+ .|..|+..+|.
T Consensus 506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence 9999999995 24589999999999999999 99999887 67889877764
No 12
>PHA00733 hypothetical protein
Probab=99.02 E-value=1.8e-10 Score=97.80 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=69.6
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHH--H---hhccCCCccccCcCCccccChhhHHHHHHHhCCCceeec-CCCc
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKH--F---SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKL 193 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H--~---~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~ 193 (417)
..+++.|.+| .+.|.....|..| + ..++++++|.|+.||+.|.....|..|++.+ +++|.|. |++.
T Consensus 37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~ 108 (128)
T PHA00733 37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE 108 (128)
T ss_pred hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence 4578999998 7777766665554 2 2344589999999999999999999999875 5689999 9999
Q ss_pred cCCchHHHHHHhhccccc
Q 014855 194 FSRRDSFITHRAFCDVLA 211 (417)
Q Consensus 194 F~~~~~L~~H~~~h~~~~ 211 (417)
|.....|.+|+...|..+
T Consensus 109 F~~~~sL~~H~~~~h~~~ 126 (128)
T PHA00733 109 FRNTDSTLDHVCKKHNIC 126 (128)
T ss_pred cCCHHHHHHHHHHhcCcc
Confidence 999999999999887665
No 13
>PHA00733 hypothetical protein
Probab=98.99 E-value=5.2e-10 Score=94.99 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=77.2
Q ss_pred hhhhhcCccccCCCCceecccccccccChHHHHHH--HHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHH
Q 014855 67 AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144 (417)
Q Consensus 67 ~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H--~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~ 144 (417)
.+.+........+.|++.|.+|++.|.....|..| .+.|. ...+.++|.|+.| ++.|....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~C-------gk~Fss~s 87 (128)
T PHA00733 25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLC-------LMPFSSSV 87 (128)
T ss_pred HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCC-------CCcCCCHH
Confidence 44444444445567899999999999998887766 22221 0115789999999 99999999
Q ss_pred HHHHHHhhccCCCccccCcCCccccChhhHHHHHHH-hC
Q 014855 145 GIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG 182 (417)
Q Consensus 145 ~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~ 182 (417)
.|..|++.| +++|.|.+|++.|.....|.+|+.. |+
T Consensus 88 ~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 88 SLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred HHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 999999987 4679999999999999999999988 65
No 14
>PHA02768 hypothetical protein; Provisional
Probab=98.70 E-value=4.9e-09 Score=74.27 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=28.3
Q ss_pred eeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhH
Q 014855 124 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDW 174 (417)
Q Consensus 124 ~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L 174 (417)
|.|++| |+.|.....|.+|+++|+ ++|+|..|+|.|.+.+.|
T Consensus 6 y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 666666 677777777777777766 566777777766665554
No 15
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.70 E-value=4.1e-08 Score=101.63 Aligned_cols=127 Identities=18% Similarity=0.369 Sum_probs=93.6
Q ss_pred CceecccccccccChHHHHHHHHhcCC-----C-cccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhcc
Q 014855 81 NRFLCEICNKGFQRDQNLQLHRRGHNL-----P-WKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH 154 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~L~~H~~~H~~-----p-~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~ 154 (417)
..-.|..|..... ..+|..|...... + ..|+........++.+.|+.| ++.|. ...|++|++.|+
T Consensus 406 ~~V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H 476 (567)
T PLN03086 406 DTVECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH 476 (567)
T ss_pred CeEECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC
Confidence 3457999987765 4567788765431 1 124444444446677899999 89896 678999999986
Q ss_pred CCCccccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCC----------chHHHHHHhhcc---ccccccCcccc
Q 014855 155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSR----------RDSFITHRAFCD---VLAEESARTIT 219 (417)
Q Consensus 155 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~----------~~~L~~H~~~h~---~~~~~~~~~~~ 219 (417)
+++.|. ||+.| .+..|..|+++ +.+|++.|. |++.|.. ...|..|...|. ..|..|++.+.
T Consensus 477 --kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vr 552 (567)
T PLN03086 477 --EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVM 552 (567)
T ss_pred --CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeee
Confidence 889999 99765 67899999998 899999999 9999952 347999998875 34455555444
Q ss_pred C
Q 014855 220 V 220 (417)
Q Consensus 220 ~ 220 (417)
.
T Consensus 553 l 553 (567)
T PLN03086 553 L 553 (567)
T ss_pred e
Confidence 3
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.62 E-value=1.8e-08 Score=71.41 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=40.0
Q ss_pred ccccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCchHHHH
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFIT 202 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~L~~ 202 (417)
-|.|++|||.|.+.++|..|+++|. ++|+|. |++.|.+++.|+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeEE
Confidence 4899999999999999999999965 899999 9999999887753
No 17
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.58 E-value=1.4e-08 Score=99.01 Aligned_cols=79 Identities=20% Similarity=0.467 Sum_probs=62.7
Q ss_pred ceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccC------
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG------ 155 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~------ 155 (417)
-|.|..|...|.....|.+|+-.-. -..-|+|++| +|.|.--.+|..|+|.|.-
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa~ 326 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAAK 326 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCcc-------cccccCchhhhhhhcccCCchhhhh
Confidence 4899999999999999999963222 2245999999 9999999999999999961
Q ss_pred ---------------------------CCccccCcCCccccChhhHHHHHHH
Q 014855 156 ---------------------------EKKWKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 156 ---------------------------ekp~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
+.-|.|.+|+|.|.+...|+.|+-+
T Consensus 327 a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlt 378 (500)
T KOG3993|consen 327 AGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLT 378 (500)
T ss_pred cCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHh
Confidence 1137788888888888888888654
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.51 E-value=5.5e-08 Score=58.84 Aligned_cols=26 Identities=31% Similarity=0.824 Sum_probs=23.1
Q ss_pred HHHHHHhhccCCCccccCcCCccccC
Q 014855 145 GIKKHFSRKHGEKKWKCEKCSKKYAV 170 (417)
Q Consensus 145 ~L~~H~~~H~~ekp~~C~~C~k~F~~ 170 (417)
+|.+|+++|+|+|||.|++|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 48899999999999999999999864
No 19
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.38 E-value=9.4e-08 Score=93.35 Aligned_cols=85 Identities=19% Similarity=0.430 Sum_probs=71.2
Q ss_pred ceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHHhCCC-----------------
Q 014855 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTR----------------- 184 (417)
Q Consensus 122 k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ek----------------- 184 (417)
..|.|..| ...|.+.-.|.+|.-.-...--|+|.+|+|.|.-..+|..|+|+|.-|
T Consensus 266 GdyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ 338 (500)
T KOG3993|consen 266 GDYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET 338 (500)
T ss_pred HHHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence 34999999 889999999999976544444599999999999999999999985211
Q ss_pred -----------------ceeec-CCCccCCchHHHHHHhhccccccc
Q 014855 185 -----------------EYKCD-CGKLFSRRDSFITHRAFCDVLAEE 213 (417)
Q Consensus 185 -----------------p~~C~-C~k~F~~~~~L~~H~~~h~~~~~~ 213 (417)
.|.|. |+|.|++...|++|+.+|+.....
T Consensus 339 rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~ 385 (500)
T KOG3993|consen 339 RAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLA 385 (500)
T ss_pred hhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccc
Confidence 29999 999999999999999999855433
No 20
>PHA00616 hypothetical protein
Probab=97.97 E-value=3.2e-06 Score=57.09 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=14.3
Q ss_pred CCcccCHHHHHHHHhhccCCCccccC
Q 014855 137 SRALGDLTGIKKHFSRKHGEKKWKCE 162 (417)
Q Consensus 137 ~k~f~~~~~L~~H~~~H~~ekp~~C~ 162 (417)
|+.|..+..|.+|++.|+|++++.|+
T Consensus 8 G~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 8 GGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred hHHHhhHHHHHHHHHHhcCCCcccee
Confidence 55555555555555555555555554
No 21
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.91 E-value=3.2e-06 Score=79.95 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=24.6
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhh
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR 152 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~ 152 (417)
++|||+|++-|| +|.++...+|+.|+.-
T Consensus 346 d~KpykCpV~gC-----~K~YknqnGLKYH~lh 373 (423)
T COG5189 346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLH 373 (423)
T ss_pred cCceecCCCCCc-----hhhhccccchhhhhhc
Confidence 569999999988 9999999999999875
No 22
>PHA00732 hypothetical protein
Probab=97.88 E-value=8.8e-06 Score=62.99 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=13.3
Q ss_pred eecccccccccChHHHHHHHHh
Q 014855 83 FLCEICNKGFQRDQNLQLHRRG 104 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~ 104 (417)
|.|..||+.|.....|+.|++.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 5566666666666666666553
No 23
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.87 E-value=1.1e-05 Score=76.47 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=22.6
Q ss_pred CCCceeccc--ccccccChHHHHHHHH
Q 014855 79 ATNRFLCEI--CNKGFQRDQNLQLHRR 103 (417)
Q Consensus 79 ~~k~~~C~~--Cgk~F~~~~~L~~H~~ 103 (417)
++|+|+|++ |.|.|+....|+.|+.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~l 372 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHML 372 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhh
Confidence 359999987 9999999999999975
No 24
>PHA00732 hypothetical protein
Probab=97.78 E-value=1.8e-05 Score=61.29 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=36.6
Q ss_pred eeeCCCCCccCCCCCCcccCHHHHHHHHhh-ccCCCccccCcCCccccChhhHHHHHHH
Q 014855 123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 123 ~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~-H~~ekp~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
+|.|..| ++.|.....|+.|++. |.+ +.|++||+.|. .|..|+++
T Consensus 1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPIC-------GFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCC-------CCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence 4788888 8999999999999885 543 58999999997 57888866
No 25
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.74 E-value=1.6e-05 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccc
Q 014855 97 NLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALG 141 (417)
Q Consensus 97 ~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~ 141 (417)
+|.+|+++|. ++++|.|++| ++.|.
T Consensus 1 ~l~~H~~~H~-------------~~k~~~C~~C-------~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHT-------------GEKPYKCPYC-------GKSFS 25 (26)
T ss_dssp HHHHHHHHHS-------------SSSSEEESSS-------SEEES
T ss_pred CHHHHhhhcC-------------CCCCCCCCCC-------cCeeC
Confidence 5899999999 9999999999 88886
No 26
>PHA00616 hypothetical protein
Probab=97.72 E-value=1.2e-05 Score=54.37 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccccCcCCccccChhhHHHHHHH-hCCCceeec
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD 189 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~ 189 (417)
||+|..||+.|..++.|..|++. ||++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 68999999999999999999999 999999986
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.68 E-value=2.6e-05 Score=45.44 Aligned_cols=23 Identities=43% Similarity=0.902 Sum_probs=21.7
Q ss_pred eecccccccccChHHHHHHHHhc
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
|+|++|++.|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999875
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.63 E-value=7e-05 Score=53.68 Aligned_cols=52 Identities=25% Similarity=0.448 Sum_probs=28.1
Q ss_pred ceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhcc
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH 154 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~ 154 (417)
.|.|++|++ .-+...|..|....+.. ..+.+.|++| ...+. .+|.+|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~-----------~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRS-----------ESKNVVCPIC-------SSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcC-----------CCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence 366777777 34456677775443311 2345667766 44332 35666665544
No 29
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.30 E-value=0.00018 Score=41.91 Aligned_cols=24 Identities=42% Similarity=0.899 Sum_probs=20.4
Q ss_pred eecccccccccChHHHHHHHHhcC
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
|.|++|++.|.+...|+.|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999998874
No 30
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.26 E-value=0.00043 Score=49.58 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=29.6
Q ss_pred eeCCCCCccCCCCCCcccCHHHHHHHHhh-ccCC-CccccCcCCccccChhhHHHHHHH
Q 014855 124 YVCPEPTCVHHDPSRALGDLTGIKKHFSR-KHGE-KKWKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 124 ~~C~~C~C~~~~~~k~f~~~~~L~~H~~~-H~~e-kp~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
|.|++| ++ ..+...|..|... |..+ +.+.|++|...+. .+|..|+..
T Consensus 3 f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 3 FTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred cCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence 677777 66 3445667777654 3332 4577777776544 367777665
No 31
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.25 E-value=0.00016 Score=42.07 Aligned_cols=21 Identities=33% Similarity=0.820 Sum_probs=10.9
Q ss_pred cccCcCCccccChhhHHHHHH
Q 014855 159 WKCEKCSKKYAVQSDWKAHSK 179 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~ 179 (417)
|+|++|++.|.++..|+.|++
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHh
Confidence 345555555555555555544
No 32
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.17 E-value=0.00027 Score=56.69 Aligned_cols=72 Identities=18% Similarity=0.421 Sum_probs=18.0
Q ss_pred ecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCc
Q 014855 84 LCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK 163 (417)
Q Consensus 84 ~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~ 163 (417)
+|..|+..|.....|..|+...++ - .... ...+.....+..+++... ...+.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~-------------~---~~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~ 55 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHG-------------F---DIPD--------QKYLVDPNRLLNYLRKKV-KESFRCPY 55 (100)
T ss_dssp -------------------------------------------------------------------------SSEEBSS
T ss_pred Cccccccccccccccccccccccc-------------c---cccc--------cccccccccccccccccc-CCCCCCCc
Confidence 488899999999999999865541 1 1111 112223333333433222 22578888
Q ss_pred CCccccChhhHHHHHHH
Q 014855 164 CSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 164 C~k~F~~~~~L~~H~~~ 180 (417)
|++.|.....|..|++.
T Consensus 56 C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 56 CNKTFRSREALQEHMRS 72 (100)
T ss_dssp SS-EESSHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHcC
Confidence 88888888888888876
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.10 E-value=0.00033 Score=42.38 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=23.5
Q ss_pred ceecccccccccChHHHHHHHHhcC
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
+|+|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 5899999999999999999999886
No 34
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00097 Score=70.40 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCcccCHHHHHHHHhhccCCCccccCcC------CccccChhhHHHHHHH
Q 014855 137 SRALGDLTGIKKHFSRKHGEKKWKCEKC------SKKYAVQSDWKAHSKI 180 (417)
Q Consensus 137 ~k~f~~~~~L~~H~~~H~~ekp~~C~~C------~k~F~~~~~L~~H~~~ 180 (417)
...|.....|.+|++.++ |.|..| +.-|.....|..|.|.
T Consensus 189 ~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~ 234 (669)
T KOG2231|consen 189 HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK 234 (669)
T ss_pred hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh
Confidence 666777777777766655 445444 2345566667777665
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.79 E-value=0.00073 Score=54.12 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=21.6
Q ss_pred eCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCchHHHHH
Q 014855 125 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITH 203 (417)
Q Consensus 125 ~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~L~~H 203 (417)
+|..| +..|.....|..|+...++-..- ..+.+.....+..+++..-...+.|. |++.|.....|..|
T Consensus 1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H 69 (100)
T PF12756_consen 1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH 69 (100)
T ss_dssp -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence 37777 99999999999999876653211 12223344445555554333479999 99999999999999
Q ss_pred Hhhcc
Q 014855 204 RAFCD 208 (417)
Q Consensus 204 ~~~h~ 208 (417)
++.++
T Consensus 70 m~~~~ 74 (100)
T PF12756_consen 70 MRSKH 74 (100)
T ss_dssp HHHTT
T ss_pred HcCcc
Confidence 99753
No 36
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.76 E-value=0.00086 Score=38.88 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=11.0
Q ss_pred cccCcCCccccChhhHHHHHHH
Q 014855 159 WKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
|.|++|++.|.+...|+.|+++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 4555555555555555555544
No 37
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.69 E-value=0.001 Score=40.25 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=14.1
Q ss_pred ceeec-CCCccCCchHHHHHHhhcc
Q 014855 185 EYKCD-CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 185 p~~C~-C~k~F~~~~~L~~H~~~h~ 208 (417)
+|.|. |++.|.....|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 35566 6666666666666665553
No 38
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.37 E-value=0.0022 Score=37.69 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=22.1
Q ss_pred eecccccccccChHHHHHHHHhcC
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
|+|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999774
No 39
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.34 E-value=0.003 Score=70.51 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCceecccccccccChHHHHHHHHhcC---CCccccc--------c-cccccCCceeeCCCCCccCCCCCCcccCHHHHH
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHN---LPWKLKQ--------R-TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK 147 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~---~p~~~~~--------~-~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~ 147 (417)
.|.|+|+.|+..|+....|..|||.-+ ....|+- + .....+.++|.|..| ...+..+.+|-
T Consensus 463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C-------~~stttng~Ls 535 (1406)
T KOG1146|consen 463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRAC-------NYSTTTNGNLS 535 (1406)
T ss_pred cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceee-------eeeeecchHHH
Confidence 488999999999999999999999843 1111221 1 111225678889888 88888888888
Q ss_pred HHHhh--ccC-----------------------------------------CCccccCcCCccccChhhHHHHHHH-hCC
Q 014855 148 KHFSR--KHG-----------------------------------------EKKWKCEKCSKKYAVQSDWKAHSKI-CGT 183 (417)
Q Consensus 148 ~H~~~--H~~-----------------------------------------ekp~~C~~C~k~F~~~~~L~~H~~~-~~e 183 (417)
+|+.. |.. +-.|.|.+|+..-+-..+|+.|+.. +..
T Consensus 536 ihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s 615 (1406)
T KOG1146|consen 536 IHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSS 615 (1406)
T ss_pred HHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCC
Confidence 88763 210 1236677776666666666666665 333
Q ss_pred C-ceeec-CCCccCCchHHHHHHhhc
Q 014855 184 R-EYKCD-CGKLFSRRDSFITHRAFC 207 (417)
Q Consensus 184 k-p~~C~-C~k~F~~~~~L~~H~~~h 207 (417)
. |.-|. |+-.+.....|..+.+.+
T Consensus 616 ~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 616 SPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred CChHHHhhhcchhhccccccCcCCCC
Confidence 3 25555 655555555555544443
No 40
>PRK04860 hypothetical protein; Provisional
Probab=96.12 E-value=0.0033 Score=55.44 Aligned_cols=27 Identities=19% Similarity=0.580 Sum_probs=14.0
Q ss_pred HHHHHHHHhhccCCCccccCcCCcccc
Q 014855 143 LTGIKKHFSRKHGEKKWKCEKCSKKYA 169 (417)
Q Consensus 143 ~~~L~~H~~~H~~ekp~~C~~C~k~F~ 169 (417)
...+.+|.++|+++++|+|..|++.|.
T Consensus 128 ~~~~rrH~ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 128 QLTVRRHNRVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred eCHHHHHHHHhcCCccEECCCCCceeE
Confidence 344555555555555555555555544
No 41
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.03 E-value=0.004 Score=43.21 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=18.4
Q ss_pred CCCccccCcCCccccChhhHHHHHHH-hCCCc
Q 014855 155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE 185 (417)
Q Consensus 155 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~ekp 185 (417)
.+.|-.|++|+..+....+|++|+.+ |+.||
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 45677777777777777777777777 66664
No 42
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.96 E-value=0.0046 Score=36.51 Aligned_cols=23 Identities=43% Similarity=0.996 Sum_probs=21.4
Q ss_pred eecccccccccChHHHHHHHHhc
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
|.|.+|++.|.++..|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999865
No 43
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.88 E-value=0.011 Score=59.61 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=89.6
Q ss_pred CcCCCCCCCCCCChhhhhcCcc--ccCCC--Cceecc--cccccccChHHHHHHHHhcCCC--cccccc--c--------
Q 014855 54 KKKRSLPGNPDPDAEVIALSPK--SLMAT--NRFLCE--ICNKGFQRDQNLQLHRRGHNLP--WKLKQR--T-------- 115 (417)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~--k~~~C~--~Cgk~F~~~~~L~~H~~~H~~p--~~~~~~--~-------- 115 (417)
...+..+.........+..+.+ .|..+ +++.|. .|++.|.+...|.+|...|.+. .++... .
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence 3444455555566666777777 78888 999999 7999999999999999998722 111100 0
Q ss_pred ----------ccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCC--ccccCcCCccccChhhHHHHHHHh-C
Q 014855 116 ----------NKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK--KWKCEKCSKKYAVQSDWKAHSKIC-G 182 (417)
Q Consensus 116 ----------~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ek--p~~C~~C~k~F~~~~~L~~H~~~~-~ 182 (417)
......+.+.|..-+| ...+.....+..|...|...+ .+.|..|.+.|.....+..|++.+ .
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 369 NEPPQSLQQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN 443 (467)
T ss_pred CCCccchhhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence 0001122333433333 666666677777777776655 455667888888888888887773 3
Q ss_pred CCceeecCCCccCCchHHHHH
Q 014855 183 TREYKCDCGKLFSRRDSFITH 203 (417)
Q Consensus 183 ekp~~C~C~k~F~~~~~L~~H 203 (417)
..++.|.+-+.|.....+..|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (467)
T COG5048 444 HAPLLCSILKSFRRDLDLSNH 464 (467)
T ss_pred CCceeeccccccchhhhhhcc
Confidence 344444444555554444433
No 44
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.66 E-value=0.014 Score=40.63 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=21.8
Q ss_pred cCCCCceecccccccccChHHHHHHHHhcC
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
+..+.+-.|++|+..+....+|++|+..++
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence 345678999999999999999999998776
No 45
>PRK04860 hypothetical protein; Provisional
Probab=95.48 E-value=0.008 Score=53.03 Aligned_cols=38 Identities=24% Similarity=0.714 Sum_probs=33.0
Q ss_pred CccccCcCCccccChhhHHHHHHH-hCCCceeec-CCCccCCch
Q 014855 157 KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRD 198 (417)
Q Consensus 157 kp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~F~~~~ 198 (417)
-+|.|. |++ ....+++|.++ .++++|+|. |++.|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 469998 998 67889999999 899999999 999987654
No 46
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.39 E-value=0.0082 Score=35.12 Aligned_cols=22 Identities=32% Similarity=0.842 Sum_probs=13.4
Q ss_pred eeec-CCCccCCchHHHHHHhhc
Q 014855 186 YKCD-CGKLFSRRDSFITHRAFC 207 (417)
Q Consensus 186 ~~C~-C~k~F~~~~~L~~H~~~h 207 (417)
|.|. |++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 4566 666666666666666544
No 47
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.29 E-value=0.014 Score=56.31 Aligned_cols=111 Identities=20% Similarity=0.352 Sum_probs=66.6
Q ss_pred ceeccc--ccccccChHHHHHHHHhcCCCccccccc------------------cccc-------C-CceeeCCCCCccC
Q 014855 82 RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRT------------------NKVE-------R-KKVYVCPEPTCVH 133 (417)
Q Consensus 82 ~~~C~~--Cgk~F~~~~~L~~H~~~H~~p~~~~~~~------------------~~~~-------~-~k~~~C~~C~C~~ 133 (417)
.|.|+. |..+......|+.|.+..+..+.|..+. +.|. | +..-.|.+|
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC---- 226 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFC---- 226 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhc----
Confidence 478875 7776666788999987765444432211 0010 0 111257776
Q ss_pred CCCCCcccCHHHHHHHHhhccCCCccccCcCCc-------cccChhhHHHHHHHhCCCceeec---C--CC--ccCCchH
Q 014855 134 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK-------KYAVQSDWKAHSKICGTREYKCD---C--GK--LFSRRDS 199 (417)
Q Consensus 134 ~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k-------~F~~~~~L~~H~~~~~ekp~~C~---C--~k--~F~~~~~ 199 (417)
...|.+...|.+|+|..+. +|-+|++ -|+.-..|.+|.+. .-|.|. | +| .|...-.
T Consensus 227 ---~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~---~hy~ct~qtc~~~k~~vf~~~~e 296 (493)
T COG5236 227 ---KIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRN---AHYCCTFQTCRVGKCYVFPYHTE 296 (493)
T ss_pred ---cceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhc---CceEEEEEEEecCcEEEeccHHH
Confidence 7788888888888776542 3444443 36777777777765 236663 5 23 4666667
Q ss_pred HHHHHhh
Q 014855 200 FITHRAF 206 (417)
Q Consensus 200 L~~H~~~ 206 (417)
|..|+..
T Consensus 297 l~~h~~~ 303 (493)
T COG5236 297 LLEHLTR 303 (493)
T ss_pred HHHHHHH
Confidence 7778644
No 48
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.91 E-value=0.0059 Score=68.26 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=40.3
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccC-------------------------CCccccCcCCccccChhhH
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG-------------------------EKKWKCEKCSKKYAVQSDW 174 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~-------------------------ekp~~C~~C~k~F~~~~~L 174 (417)
..+.|+|+.| +..|+....|..|||..+- .++|.|..|...|..+..|
T Consensus 462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~L 534 (1406)
T KOG1146|consen 462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNL 534 (1406)
T ss_pred ccccccCCcc-------chhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHH
Confidence 4588999999 9999999999999998431 2456666666666666666
Q ss_pred HHHHHH
Q 014855 175 KAHSKI 180 (417)
Q Consensus 175 ~~H~~~ 180 (417)
.+|+..
T Consensus 535 sihlqS 540 (1406)
T KOG1146|consen 535 SIHLQS 540 (1406)
T ss_pred HHHHHH
Confidence 666653
No 49
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.67 E-value=0.041 Score=55.36 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=76.3
Q ss_pred CceecccccccccChHHHHHHHH--hcCCCcccccccccccCC--ceeeCC--CCCccCCCCCCcccCHHHHHHHHhhcc
Q 014855 81 NRFLCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTNKVERK--KVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKH 154 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~L~~H~~--~H~~p~~~~~~~~~~~~~--k~~~C~--~C~C~~~~~~k~f~~~~~L~~H~~~H~ 154 (417)
.++.|..|.+.|.....|.+|.+ .|. ++ +++.|+ .| ++.|.....+.+|...|.
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~ 347 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT 347 (467)
T ss_pred cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence 57999999999999999999999 787 77 899999 67 999999999999999999
Q ss_pred CCCccccCc--CCccccChhhH----HHHHH-H-hCCCceeec---CCCccCCchHHHHHHhhc
Q 014855 155 GEKKWKCEK--CSKKYAVQSDW----KAHSK-I-CGTREYKCD---CGKLFSRRDSFITHRAFC 207 (417)
Q Consensus 155 ~ekp~~C~~--C~k~F~~~~~L----~~H~~-~-~~ekp~~C~---C~k~F~~~~~L~~H~~~h 207 (417)
+.+++.|.. |.+.+.....- ..+.. . ...+.+.|. |...+.+...+..|...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (467)
T COG5048 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH 411 (467)
T ss_pred CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccc
Confidence 988777744 55544443331 11111 1 334455553 555555555555555444
No 50
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.64 E-value=0.0088 Score=36.16 Aligned_cols=23 Identities=30% Similarity=0.816 Sum_probs=20.9
Q ss_pred eecccccccccChHHHHHHHHhc
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
|.|..|++.|.+...|..|+++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCcccCCCCcCCHHHHHHHHccC
Confidence 78999999999999999998753
No 51
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.15 E-value=0.027 Score=33.09 Aligned_cols=21 Identities=19% Similarity=0.730 Sum_probs=12.1
Q ss_pred cccCcCCccccChhhHHHHHH
Q 014855 159 WKCEKCSKKYAVQSDWKAHSK 179 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~ 179 (417)
|.|.+|++.|.....|+.|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 445556666666666655554
No 52
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=0.026 Score=50.78 Aligned_cols=81 Identities=21% Similarity=0.495 Sum_probs=66.1
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHH-h----------CCCceee
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTREYKC 188 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~----------~ekp~~C 188 (417)
....|.|.+-|| -+.|.....+..|..+-++. .|.+|.+.|.+...|..|+.- | |..-|.|
T Consensus 76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C 147 (253)
T KOG4173|consen 76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC 147 (253)
T ss_pred ccccccccccch-----HHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence 345688999988 88999998888888765553 899999999999999999865 4 4456999
Q ss_pred --c-CCCccCCchHHHHHHhhcc
Q 014855 189 --D-CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 189 --~-C~k~F~~~~~L~~H~~~h~ 208 (417)
+ |+..|.+...-+.|+-.-|
T Consensus 148 lvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 148 LVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred HHHhhhhhhhhhhhhhhHHHHhc
Confidence 4 9999999999899975433
No 53
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=93.37 E-value=0.051 Score=31.67 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=18.7
Q ss_pred eecccccccccChHHHHHHHHhcC
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
|+|..|+.... +..|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 78999998888 889999998864
No 54
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.083 Score=56.21 Aligned_cols=62 Identities=23% Similarity=0.437 Sum_probs=38.8
Q ss_pred ceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccC--cCC-ccccChhhHHHHHH----H-hCCCceee
Q 014855 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCS-KKYAVQSDWKAHSK----I-CGTREYKC 188 (417)
Q Consensus 122 k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~--~C~-k~F~~~~~L~~H~~----~-~~ekp~~C 188 (417)
..|.|..|.- -..+...|..-..|..|.+.+| |.|+ .|. +.|.....+..|++ . ..++-|.|
T Consensus 205 ~h~~chfC~~-~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~ 274 (669)
T KOG2231|consen 205 DHEFCHFCDY-KTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELKAHNRFIQHEKCYIC 274 (669)
T ss_pred ceeheeecCc-ccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHHhhccccchheeccC
Confidence 3477777731 1112677888899999999877 7776 463 44544444444444 3 55666776
No 55
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=93.05 E-value=0.072 Score=31.02 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=7.1
Q ss_pred CCcccCHHHHHHHHhhc
Q 014855 137 SRALGDLTGIKKHFSRK 153 (417)
Q Consensus 137 ~k~f~~~~~L~~H~~~H 153 (417)
+.... ...|.+|++.|
T Consensus 7 ~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 7 SYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp S-EES-HHHHHHHHHHH
T ss_pred CCcCC-HHHHHHHHHhh
Confidence 44444 44455555443
No 56
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.67 E-value=0.029 Score=33.82 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=14.2
Q ss_pred cccCcCCccccChhhHHHHHHH
Q 014855 159 WKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5566666666666666666553
No 57
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=91.63 E-value=0.33 Score=47.92 Aligned_cols=118 Identities=21% Similarity=0.358 Sum_probs=82.7
Q ss_pred ceecccccccccChHHHHHHHHhcCCCcccc---------------cc--------cc-cccCCceeeCCCCCccCCCCC
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLK---------------QR--------TN-KVERKKVYVCPEPTCVHHDPS 137 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~---------------~~--------~~-~~~~~k~~~C~~C~C~~~~~~ 137 (417)
-|.|.-|...|.....-+.|+++----|-+| .+ .. ....+.++.|.+| .
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c-------~ 75 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEAC-------N 75 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHh-------h
Confidence 3899999999999988889987532111111 10 00 1235678999999 9
Q ss_pred CcccCHHHHHHHHhhcc---------------------------------C-----------------------------
Q 014855 138 RALGDLTGIKKHFSRKH---------------------------------G----------------------------- 155 (417)
Q Consensus 138 k~f~~~~~L~~H~~~H~---------------------------------~----------------------------- 155 (417)
+.|........|+.... |
T Consensus 76 k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~ 155 (390)
T KOG2785|consen 76 KSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIE 155 (390)
T ss_pred ccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhh
Confidence 99988877777764211 0
Q ss_pred --------CCccccCcCCccccChhhHHHHHHH-hCC-----------------------Cceeec-CC---CccCCchH
Q 014855 156 --------EKKWKCEKCSKKYAVQSDWKAHSKI-CGT-----------------------REYKCD-CG---KLFSRRDS 199 (417)
Q Consensus 156 --------ekp~~C~~C~k~F~~~~~L~~H~~~-~~e-----------------------kp~~C~-C~---k~F~~~~~ 199 (417)
+-|-.|-.|++.|..-..-..||.. ||- .-|.|- |. +.|..-..
T Consensus 156 ~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~slea 235 (390)
T KOG2785|consen 156 EDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEA 235 (390)
T ss_pred hccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHH
Confidence 0123588899999988888899887 652 127888 87 88998889
Q ss_pred HHHHHhh
Q 014855 200 FITHRAF 206 (417)
Q Consensus 200 L~~H~~~ 206 (417)
.+.||..
T Consensus 236 vr~HM~~ 242 (390)
T KOG2785|consen 236 VRAHMRD 242 (390)
T ss_pred HHHHHhh
Confidence 9999854
No 58
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.11 E-value=0.16 Score=32.29 Aligned_cols=24 Identities=29% Similarity=0.811 Sum_probs=21.3
Q ss_pred ceecccccccccChHHHHHHHHhc
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
+|.|++|++.|.....+..|++..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChH
Confidence 589999999999999999998653
No 59
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=90.00 E-value=0.24 Score=29.39 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=17.9
Q ss_pred eecccccccccChHHHHHHHHh
Q 014855 83 FLCEICNKGFQRDQNLQLHRRG 104 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~ 104 (417)
..|+.||+.| ....|.+|+++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 67789999864
No 60
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=89.46 E-value=0.3 Score=28.97 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=10.6
Q ss_pred ccCcCCccccChhhHHHHHH
Q 014855 160 KCEKCSKKYAVQSDWKAHSK 179 (417)
Q Consensus 160 ~C~~C~k~F~~~~~L~~H~~ 179 (417)
.|..||+.| ..+.|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 455666666 4455555554
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.24 E-value=0.4 Score=46.62 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=57.2
Q ss_pred ecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCc
Q 014855 84 LCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK 163 (417)
Q Consensus 84 ~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~ 163 (417)
.|..|.+.|.....|.+|+|.-+ ++.|.|+.- -.....-|++...|.+|++.-+ |.|.+
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~H--------------E~ChICD~v---~p~~~QYFK~Y~~Le~HF~~~h----y~ct~ 280 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRH--------------EACHICDMV---GPIRYQYFKSYEDLEAHFRNAH----YCCTF 280 (493)
T ss_pred hhhhccceecChHHHHHHHHhhh--------------hhhhhhhcc---CccchhhhhCHHHHHHHhhcCc----eEEEE
Confidence 49999999999999999998765 555555443 2222456888899999988644 67754
Q ss_pred --CC----ccccChhhHHHHHHH-hC
Q 014855 164 --CS----KKYAVQSDWKAHSKI-CG 182 (417)
Q Consensus 164 --C~----k~F~~~~~L~~H~~~-~~ 182 (417)
|- ..|...-.|..|+-. |+
T Consensus 281 qtc~~~k~~vf~~~~el~~h~~~~h~ 306 (493)
T COG5236 281 QTCRVGKCYVFPYHTELLEHLTRFHK 306 (493)
T ss_pred EEEecCcEEEeccHHHHHHHHHHHhh
Confidence 42 467888888999776 64
No 62
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=86.96 E-value=0.41 Score=30.35 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=16.7
Q ss_pred ccccCcCCccccChhhHHHHHHH
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
+|.|++|++.|.....+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 46677777777777777777664
No 63
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=86.58 E-value=0.2 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.653 Sum_probs=16.5
Q ss_pred ecccccccccChHHHHHHHHhcC
Q 014855 84 LCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 84 ~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
-|=+|++.|..+.-|..|++..+
T Consensus 12 wcwycnrefddekiliqhqkakh 34 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKH 34 (341)
T ss_pred eeeecccccchhhhhhhhhhhcc
Confidence 47778888888888887775433
No 64
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=86.17 E-value=1.5 Score=42.67 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=55.8
Q ss_pred ceeeCCCCCccCCCCCCcccCHHHHHHHHhhccC----------------------CCccccCcCCccccChhhHHHHHH
Q 014855 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG----------------------EKKWKCEKCSKKYAVQSDWKAHSK 179 (417)
Q Consensus 122 k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~----------------------ekp~~C~~C~k~F~~~~~L~~H~~ 179 (417)
...+|-+|. ......++.+..|+-.-++ -..+.|-.|.|.|+.+..|+.|||
T Consensus 143 fslqClFCn------~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMr 216 (423)
T KOG2482|consen 143 FSLQCLFCN------NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMR 216 (423)
T ss_pred eeeEEEEec------chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHH
Confidence 445777772 3345566777777653332 124678888888988888888888
Q ss_pred H--hCC-Cc------------------------------------------------------eeec-CCCccCCchHHH
Q 014855 180 I--CGT-RE------------------------------------------------------YKCD-CGKLFSRRDSFI 201 (417)
Q Consensus 180 ~--~~e-kp------------------------------------------------------~~C~-C~k~F~~~~~L~ 201 (417)
. |.+ .| .+|- |....-....|.
T Consensus 217 kK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~ 296 (423)
T KOG2482|consen 217 KKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLF 296 (423)
T ss_pred hccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHH
Confidence 6 311 01 5798 998888888999
Q ss_pred HHHhhcc
Q 014855 202 THRAFCD 208 (417)
Q Consensus 202 ~H~~~h~ 208 (417)
.||+..|
T Consensus 297 eHmk~vH 303 (423)
T KOG2482|consen 297 EHMKIVH 303 (423)
T ss_pred HHHHHHH
Confidence 9998765
No 65
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=85.59 E-value=0.77 Score=44.69 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=60.8
Q ss_pred eeeCCCCCccCCCCCCcccCHHHHHHHHhhcc------------------------------------------------
Q 014855 123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH------------------------------------------------ 154 (417)
Q Consensus 123 ~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~------------------------------------------------ 154 (417)
.+.|-.| .+.|..+..|+.|||...
T Consensus 195 r~~CLyC-------ekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~w 267 (423)
T KOG2482|consen 195 RLRCLYC-------EKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTW 267 (423)
T ss_pred hheeeee-------ccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccch
Confidence 4789999 999999999999998532
Q ss_pred ------CCCc--cccCcCCccccChhhHHHHHHH-hCC---------------------------Cceeec-CCCccCCc
Q 014855 155 ------GEKK--WKCEKCSKKYAVQSDWKAHSKI-CGT---------------------------REYKCD-CGKLFSRR 197 (417)
Q Consensus 155 ------~ekp--~~C~~C~k~F~~~~~L~~H~~~-~~e---------------------------kp~~C~-C~k~F~~~ 197 (417)
+..+ .+|-.|.+.+.+...|..||++ |.- +.-.|- |.-.|-..
T Consensus 268 sDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e 347 (423)
T KOG2482|consen 268 SDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKE 347 (423)
T ss_pred hhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCc
Confidence 0011 3799999999999999999997 521 114466 88899999
Q ss_pred hHHHHHHhhc
Q 014855 198 DSFITHRAFC 207 (417)
Q Consensus 198 ~~L~~H~~~h 207 (417)
..|..|+.-+
T Consensus 348 ~~l~~hm~e~ 357 (423)
T KOG2482|consen 348 PGLLIHMVED 357 (423)
T ss_pred chhhhhcccc
Confidence 9999998654
No 66
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=84.95 E-value=0.42 Score=33.85 Aligned_cols=27 Identities=22% Similarity=0.580 Sum_probs=16.4
Q ss_pred cCCCccccCcCCccccChhhHHHHHHH
Q 014855 154 HGEKKWKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 154 ~~ekp~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
.||.-++|+.||..|....+..+|...
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 345556666666666666666666555
No 67
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.75 E-value=0.52 Score=42.62 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=63.3
Q ss_pred CCCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhh-cc-
Q 014855 79 ATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR-KH- 154 (417)
Q Consensus 79 ~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~-H~- 154 (417)
....|.|.+ |-..|.....+..|..+-+ + -.|.+| .+.|.+..-|..|+.. |.
T Consensus 76 ~~~~~~cqvagc~~~~d~lD~~E~hY~~~h-------------~---~sCs~C-------~r~~Pt~hLLd~HI~E~HDs 132 (253)
T KOG4173|consen 76 RVPAFACQVAGCCQVFDALDDYEHHYHTLH-------------G---NSCSFC-------KRAFPTGHLLDAHILEWHDS 132 (253)
T ss_pred ccccccccccchHHHHhhhhhHHHhhhhcc-------------c---chhHHH-------HHhCCchhhhhHHHHHHHHH
Confidence 345688987 8899998888888876544 2 478888 9999999999999764 32
Q ss_pred --------CCCcccc--CcCCccccChhhHHHHHHH
Q 014855 155 --------GEKKWKC--EKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 155 --------~ekp~~C--~~C~k~F~~~~~L~~H~~~ 180 (417)
|.-.|.| +.|+..|++...-+.|+..
T Consensus 133 ~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 133 LFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR 168 (253)
T ss_pred HHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence 4557999 5599999999999999876
No 68
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.20 E-value=1.7 Score=35.78 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=31.3
Q ss_pred ccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCchHHHHHHhhcc
Q 014855 160 KCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 160 ~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~L~~H~~~h~ 208 (417)
.|--|.+.|........- .......|+|. |...|-..-+.-.|...|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~-~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFD-ELKDSHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred cccCcCCCCCCccccccc-ccccccceeCCCCCCccccccchhhhhhccC
Confidence 388888888754321100 01234578898 9988888878788877764
No 69
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.78 E-value=0.97 Score=42.28 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=31.0
Q ss_pred cccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCchHHHHHHh
Q 014855 159 WKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRA 205 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~L~~H~~ 205 (417)
|.|.+||.... +..+.+|+..+...-|.|- |++.|-+ .+++.|..
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence 67788877654 3456668777444678887 8888877 56677754
No 70
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=82.59 E-value=0.65 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.2
Q ss_pred cccCCCCceecccccccccChHHHHHHHHhcC
Q 014855 75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 75 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
....++.-+.|+-||+.|.....+.+|...-+
T Consensus 10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred eccCCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 34556777999999999999999999976443
No 71
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=81.54 E-value=1.6 Score=46.69 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.7
Q ss_pred CCceecccccccccChHHHHHHHHhcC
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
...|.|.+|+|+|-....+..||++|.
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 346999999999999999999999997
No 72
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=81.42 E-value=2.1 Score=35.05 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=21.1
Q ss_pred eee----c-CCCccCCchHHHHHHhhcc
Q 014855 186 YKC----D-CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 186 ~~C----~-C~k~F~~~~~L~~H~~~h~ 208 (417)
|.| . |+..+.....+.+|.+.+|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 999 8 9999999999999998776
No 73
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=80.80 E-value=0.5 Score=43.64 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=29.1
Q ss_pred eCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHH
Q 014855 125 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH 177 (417)
Q Consensus 125 ~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H 177 (417)
-|.+| ++.|.+..-|..|.+. |.|+|.+|.|..-+--.|..|
T Consensus 12 wcwyc-------nrefddekiliqhqka----khfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 12 WCWYC-------NREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeeec-------ccccchhhhhhhhhhh----ccceeeeehhhhccCCCceee
Confidence 47777 8888887777777665 348888887766555555555
No 74
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.57 E-value=0.58 Score=43.41 Aligned_cols=41 Identities=22% Similarity=0.531 Sum_probs=23.3
Q ss_pred CccccCcCCccccChhhHHHHHHH-h----------CCCc-----eeec-CCCccCCc
Q 014855 157 KKWKCEKCSKKYAVQSDWKAHSKI-C----------GTRE-----YKCD-CGKLFSRR 197 (417)
Q Consensus 157 kp~~C~~C~k~F~~~~~L~~H~~~-~----------~ekp-----~~C~-C~k~F~~~ 197 (417)
|.+.|++|++.|.++.-.....+. . +..| ..|+ ||.+|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 456677777766665544444332 1 2222 5688 88777654
No 75
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=75.69 E-value=2.5 Score=28.42 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=17.5
Q ss_pred CCCCceecccccccccCh----HHHHHHHH
Q 014855 78 MATNRFLCEICNKGFQRD----QNLQLHRR 103 (417)
Q Consensus 78 ~~~k~~~C~~Cgk~F~~~----~~L~~H~~ 103 (417)
.+.+..+|..|++.|... .+|.+|++
T Consensus 12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp GCSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CCcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 345678999999999875 78999984
No 76
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=73.64 E-value=2.4 Score=26.84 Aligned_cols=10 Identities=30% Similarity=1.076 Sum_probs=7.4
Q ss_pred CccccCcCCc
Q 014855 157 KKWKCEKCSK 166 (417)
Q Consensus 157 kp~~C~~C~k 166 (417)
.++.|++||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 6778888874
No 77
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.13 E-value=2.1 Score=35.15 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=7.0
Q ss_pred CccccCcCCccccC
Q 014855 157 KKWKCEKCSKKYAV 170 (417)
Q Consensus 157 kp~~C~~C~k~F~~ 170 (417)
.|..|++||..|.-
T Consensus 25 ~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 25 DPIVCPKCGTEFPP 38 (108)
T ss_pred CCccCCCCCCccCc
Confidence 44555555555443
No 78
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=72.31 E-value=1.8 Score=43.19 Aligned_cols=120 Identities=15% Similarity=0.289 Sum_probs=66.8
Q ss_pred Cceec--ccccccccChHHHHHHHHhcCCCc-ccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCC-
Q 014855 81 NRFLC--EICNKGFQRDQNLQLHRRGHNLPW-KLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE- 156 (417)
Q Consensus 81 k~~~C--~~Cgk~F~~~~~L~~H~~~H~~p~-~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~e- 156 (417)
.-|.| +.|+..+..+....+|...|.+.. .+.... +.-...|.|..-+| .+ ..+.+..|-.-|+..
T Consensus 270 Ehyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf--~rfs~syhC~~~~C-----~k---sTsdV~~h~nFht~~~ 339 (480)
T KOG4377|consen 270 EHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGF--HRFSNSYHCTGQIC-----EK---STSDVLLHDNFHTDKR 339 (480)
T ss_pred hhhcccCccccccccchhhhHHHHHHHhhcccccccch--hhcCccchhhhccc-----Cc---ccccccccCccccccc
Confidence 34677 459888777999999999886110 000000 00011244544433 66 345566666666432
Q ss_pred ------CccccCcCC--ccccChhhHHHHHHH-----hCC--------------------Cceeec---CCCccCCchHH
Q 014855 157 ------KKWKCEKCS--KKYAVQSDWKAHSKI-----CGT--------------------REYKCD---CGKLFSRRDSF 200 (417)
Q Consensus 157 ------kp~~C~~C~--k~F~~~~~L~~H~~~-----~~e--------------------kp~~C~---C~k~F~~~~~L 200 (417)
..|.|..|| ..|+...+-..|.+- -|- .-|.|. |+.+|...+.+
T Consensus 340 n~GfrrthfhC~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm 419 (480)
T KOG4377|consen 340 NNGFRRTHFHCQRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQM 419 (480)
T ss_pred cCceecceeEEeccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhh
Confidence 236676666 444422222222211 010 126675 99999999999
Q ss_pred HHHHhhcccc
Q 014855 201 ITHRAFCDVL 210 (417)
Q Consensus 201 ~~H~~~h~~~ 210 (417)
..|.+.|...
T Consensus 420 ~shkrkheRq 429 (480)
T KOG4377|consen 420 ASHKRKHERQ 429 (480)
T ss_pred hhhhhhhhhh
Confidence 9999999754
No 79
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=71.90 E-value=2.4 Score=44.46 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=25.2
Q ss_pred cCCCCceecccccccccChHHHHHHHHhcC
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
+-..++..|..||.+|........||..|.
T Consensus 413 Ly~~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 413 LYKDSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred hccCCcchhcccccccccchhhhhHhhhhh
Confidence 344567899999999999999888888874
No 80
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=71.52 E-value=1.5 Score=40.58 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCCccccCcCCccccChhhHHHHHHH-hCCC
Q 014855 155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR 184 (417)
Q Consensus 155 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~ek 184 (417)
.+..|.|..|+|.|+-..-++.|+.. |.++
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence 45568888888888888888888877 6653
No 81
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=68.40 E-value=10 Score=30.89 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=22.1
Q ss_pred ccc----CcCCccccChhhHHHHHHH-hC
Q 014855 159 WKC----EKCSKKYAVQSDWKAHSKI-CG 182 (417)
Q Consensus 159 ~~C----~~C~k~F~~~~~L~~H~~~-~~ 182 (417)
|.| ..|+..+.+...+.+|++. ||
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 789 9999999999999999988 64
No 82
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=67.47 E-value=4 Score=26.42 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=5.3
Q ss_pred ccCcCCccccCh
Q 014855 160 KCEKCSKKYAVQ 171 (417)
Q Consensus 160 ~C~~C~k~F~~~ 171 (417)
.|+.|++.|.-.
T Consensus 4 ~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 4 TCPNCQAKYEID 15 (36)
T ss_pred ECCCCCCEEeCC
Confidence 344444444433
No 83
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=67.22 E-value=0.99 Score=44.07 Aligned_cols=28 Identities=7% Similarity=-0.185 Sum_probs=22.0
Q ss_pred cCCCCceecccccccccChHHHHHH-HHhc
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLH-RRGH 105 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H-~~~H 105 (417)
.+..++|+|. |++.+.++..|+.| +..|
T Consensus 208 ~t~~~p~k~~-~~~~~~T~~~l~~HS~N~~ 236 (442)
T KOG4124|consen 208 ETTGTPKKMP-ESLVMDTSSPLSDHSMNID 236 (442)
T ss_pred ccccCCccCc-ccccccccchhhhccccCC
Confidence 4455789995 89999999999988 4444
No 84
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=66.50 E-value=4.3 Score=28.17 Aligned_cols=26 Identities=38% Similarity=0.695 Sum_probs=20.8
Q ss_pred CceecccccccccCh-----HHHHHHHH-hcC
Q 014855 81 NRFLCEICNKGFQRD-----QNLQLHRR-GHN 106 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~-----~~L~~H~~-~H~ 106 (417)
..-.|..|++.+... ++|.+|++ .|.
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 346899999999776 68999988 553
No 85
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=66.33 E-value=4.8 Score=27.04 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=9.5
Q ss_pred CCccccCcCCccccCh----hhHHHHH
Q 014855 156 EKKWKCEKCSKKYAVQ----SDWKAHS 178 (417)
Q Consensus 156 ekp~~C~~C~k~F~~~----~~L~~H~ 178 (417)
+...+|..|++.+... +.|.+|+
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 3445566665555442 4455554
No 86
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=65.81 E-value=4.4 Score=26.34 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=6.1
Q ss_pred CccccCcCCccc
Q 014855 157 KKWKCEKCSKKY 168 (417)
Q Consensus 157 kp~~C~~C~k~F 168 (417)
+..+|..|+..|
T Consensus 24 ~~vrC~~C~~~f 35 (37)
T PF13719_consen 24 RKVRCPKCGHVF 35 (37)
T ss_pred cEEECCCCCcEe
Confidence 345555555544
No 87
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=65.25 E-value=13 Score=37.00 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=50.2
Q ss_pred CceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccc
Q 014855 81 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWK 160 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~ 160 (417)
.|-.|-.|++.|.....-..||..+++.| ..++ .-+.+..+|..-+....+ +-|.
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~Hgff---------IPdr---------------eYL~D~~GLl~YLgeKV~-~~~~ 219 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFF---------IPDR---------------EYLTDEKGLLKYLGEKVG-IGFI 219 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCc---------CCch---------------HhhhchhHHHHHHHHHhc-cCce
Confidence 34679999999999998899998887321 1111 122333344444333332 4578
Q ss_pred cCcCC---ccccChhhHHHHHHH
Q 014855 161 CEKCS---KKYAVQSDWKAHSKI 180 (417)
Q Consensus 161 C~~C~---k~F~~~~~L~~H~~~ 180 (417)
|-.|. +.|......+.||.-
T Consensus 220 CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 220 CLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred EEEeccccCcccccHHHHHHHhh
Confidence 88887 888888889999886
No 88
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.11 E-value=4.1 Score=38.25 Aligned_cols=50 Identities=14% Similarity=0.409 Sum_probs=36.1
Q ss_pred eecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccC
Q 014855 83 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG 155 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ 155 (417)
|.|.+||..... -.|.+|+-..+ + .-|.|-.| ++.|.. ..++.|..--+.
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCr-------------n-~~fSCIDC-------~k~F~~-~sYknH~kCITE 53 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCR-------------N-AYFSCIDC-------GKTFER-VSYKNHTKCITE 53 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhcc-------------C-CeeEEeec-------cccccc-chhhhhhhhcch
Confidence 889999987764 45677876665 3 56888877 888887 667777765443
No 89
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=62.27 E-value=1.8 Score=37.94 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=10.1
Q ss_pred cccCcCCccccChhh
Q 014855 159 WKCEKCSKKYAVQSD 173 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~ 173 (417)
+.|..||++|.....
T Consensus 29 ~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 29 RECLACGKRFTTFER 43 (154)
T ss_pred eeccccCCcceEeEe
Confidence 677777777765544
No 90
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=60.96 E-value=3.4 Score=32.30 Aligned_cols=12 Identities=58% Similarity=1.459 Sum_probs=7.9
Q ss_pred ccccCcCCcccc
Q 014855 158 KWKCEKCSKKYA 169 (417)
Q Consensus 158 p~~C~~C~k~F~ 169 (417)
-|.|..||..|.
T Consensus 53 IW~C~kCg~~fA 64 (89)
T COG1997 53 IWKCRKCGAKFA 64 (89)
T ss_pred eEEcCCCCCeec
Confidence 367777776664
No 91
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=59.39 E-value=6 Score=33.25 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=6.7
Q ss_pred Cceeec-CCCccCCc
Q 014855 184 REYKCD-CGKLFSRR 197 (417)
Q Consensus 184 kp~~C~-C~k~F~~~ 197 (417)
.|..|. ||..|...
T Consensus 25 ~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 25 RPAVSPYTGEQFPPE 39 (129)
T ss_pred CCccCCCcCCccCcc
Confidence 445555 55554433
No 92
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=59.32 E-value=8.7 Score=32.75 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=17.3
Q ss_pred CCCCceecccccccccChHHHHHHHHhcC
Q 014855 78 MATNRFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 78 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
..+....|-+|||.|.. |++|.+.|+
T Consensus 68 I~~d~i~clecGk~~k~---LkrHL~~~~ 93 (132)
T PF05443_consen 68 ITPDYIICLECGKKFKT---LKRHLRTHH 93 (132)
T ss_dssp B-SS-EE-TBT--EESB---HHHHHHHTT
T ss_pred cccCeeEEccCCcccch---HHHHHHHcc
Confidence 34566899999999975 589999996
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=58.36 E-value=15 Score=31.74 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=7.3
Q ss_pred CccccCcCCccccC
Q 014855 157 KKWKCEKCSKKYAV 170 (417)
Q Consensus 157 kp~~C~~C~k~F~~ 170 (417)
.-|.|+.|++.|..
T Consensus 98 ~~Y~Cp~C~~~y~~ 111 (147)
T smart00531 98 AYYKCPNCQSKYTF 111 (147)
T ss_pred cEEECcCCCCEeeH
Confidence 34555555555543
No 94
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=58.09 E-value=7.2 Score=34.58 Aligned_cols=24 Identities=38% Similarity=0.717 Sum_probs=19.1
Q ss_pred ceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCC
Q 014855 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS 165 (417)
Q Consensus 122 k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~ 165 (417)
+.|+|++| |. +|.|+-|.+|++||
T Consensus 133 ~~~vC~vC-------Gy-------------~~~ge~P~~CPiCg 156 (166)
T COG1592 133 KVWVCPVC-------GY-------------THEGEAPEVCPICG 156 (166)
T ss_pred CEEEcCCC-------CC-------------cccCCCCCcCCCCC
Confidence 37999999 64 34678899999998
No 95
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=57.65 E-value=5.8 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.626 Sum_probs=24.3
Q ss_pred ccccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCc
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRR 197 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~ 197 (417)
+..|..||++|.-. +..|-.|. ||..|.-.
T Consensus 9 KR~Cp~CG~kFYDL----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDL----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccC----------CCCCccCCCCCCccCcc
Confidence 46899999999553 34889999 99999876
No 96
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=56.11 E-value=8.6 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.0
Q ss_pred eecccccccccChHHH
Q 014855 83 FLCEICNKGFQRDQNL 98 (417)
Q Consensus 83 ~~C~~Cgk~F~~~~~L 98 (417)
+.|+.|+..|.-....
T Consensus 3 ~~CP~C~~~~~v~~~~ 18 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQ 18 (38)
T ss_pred EECCCCCCEEEeCHHH
Confidence 7899999999876653
No 97
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=55.36 E-value=11 Score=33.15 Aligned_cols=18 Identities=6% Similarity=0.264 Sum_probs=8.4
Q ss_pred CccccCcCCccccChhhH
Q 014855 157 KKWKCEKCSKKYAVQSDW 174 (417)
Q Consensus 157 kp~~C~~C~k~F~~~~~L 174 (417)
.-|.|+.|+..|+....+
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAM 125 (158)
T ss_pred CeEECCCCCcEeeHHHHH
Confidence 334555555544444443
No 98
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=53.88 E-value=13 Score=37.66 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=25.3
Q ss_pred CCCccccCcCCccccChhhHHHHHHHhCCCceeec-CCCc
Q 014855 155 GEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKL 193 (417)
Q Consensus 155 ~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~ 193 (417)
...-|.|+.|.+.|.....+..- .-.+-.|.|. |+-.
T Consensus 125 ~~~~Y~Cp~C~kkyt~Lea~~L~--~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYTSLEALQLL--DNETGEFHCENCGGE 162 (436)
T ss_pred ccccccCCccccchhhhHHHHhh--cccCceEEEecCCCc
Confidence 34569999999999776665421 1334579998 8643
No 99
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=53.08 E-value=11 Score=33.98 Aligned_cols=17 Identities=12% Similarity=0.508 Sum_probs=8.9
Q ss_pred CccccCcCCccccChhh
Q 014855 157 KKWKCEKCSKKYAVQSD 173 (417)
Q Consensus 157 kp~~C~~C~k~F~~~~~ 173 (417)
.-|.|+.|++.|.....
T Consensus 116 ~~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEA 132 (178)
T ss_pred CEEECCCCCcEEeHHHH
Confidence 34555555555554444
No 100
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.36 E-value=3.6 Score=38.11 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=28.8
Q ss_pred CceeeCCCCCccCCCCCCcccCHHHHHHHHhh---cc-------CCCc-----cccCcCCccccCh
Q 014855 121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR---KH-------GEKK-----WKCEKCSKKYAVQ 171 (417)
Q Consensus 121 ~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~---H~-------~ekp-----~~C~~C~k~F~~~ 171 (417)
.+.+.|++| ++.|..+.-+....+. .. +..| +.|+.||.+|...
T Consensus 3 ~k~~~CPvC-------~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVC-------GKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCC-------CCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 466899999 8888876554444432 11 2223 5799999887644
No 101
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=52.13 E-value=7.4 Score=27.12 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=5.4
Q ss_pred CccccCcCCc
Q 014855 157 KKWKCEKCSK 166 (417)
Q Consensus 157 kp~~C~~C~k 166 (417)
...+|+.||.
T Consensus 23 ~~irCp~Cg~ 32 (49)
T COG1996 23 RGIRCPYCGS 32 (49)
T ss_pred CceeCCCCCc
Confidence 3455666654
No 102
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=52.07 E-value=13 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCCceecccccccccChHHHHHHHHhcC
Q 014855 79 ATNRFLCEICNKGFQRDQNLQLHRRGHN 106 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~ 106 (417)
...-..|-+|||.|. .|++|.++|.
T Consensus 73 tpD~IicLEDGkkfK---SLKRHL~t~~ 97 (148)
T COG4957 73 TPDYIICLEDGKKFK---SLKRHLTTHY 97 (148)
T ss_pred CCCeEEEeccCcchH---HHHHHHhccc
Confidence 334578999999995 6999999987
No 103
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=51.97 E-value=7.7 Score=34.39 Aligned_cols=24 Identities=33% Similarity=0.798 Sum_probs=19.5
Q ss_pred CccccCcCCccccChhhHHHHHHHhCCCceeec-CCC
Q 014855 157 KKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGK 192 (417)
Q Consensus 157 kp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k 192 (417)
+-|+|.+||..+ -|+-|-+|+ ||-
T Consensus 133 ~~~vC~vCGy~~------------~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVCGYTH------------EGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCCCCcc------------cCCCCCcCCCCCC
Confidence 369999999765 367899999 983
No 104
>PRK04023 DNA polymerase II large subunit; Validated
Probab=50.68 E-value=13 Score=41.82 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=8.6
Q ss_pred CCceeccccccc
Q 014855 80 TNRFLCEICNKG 91 (417)
Q Consensus 80 ~k~~~C~~Cgk~ 91 (417)
.....|+.||+.
T Consensus 624 Vg~RfCpsCG~~ 635 (1121)
T PRK04023 624 IGRRKCPSCGKE 635 (1121)
T ss_pred ccCccCCCCCCc
Confidence 345678888876
No 105
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.27 E-value=21 Score=29.44 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=47.9
Q ss_pred ceecccccccccChHHHHHHHHhcC----CCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCC
Q 014855 82 RFLCEICNKGFQRDQNLQLHRRGHN----LPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK 157 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H~~~H~----~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ek 157 (417)
|.+|++||-..-...+|.|- -|+ .+|.=.... .......|--| .+.|........- .-....
T Consensus 15 P~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~---~~~~~~~C~~C-------~~~f~~~~~~~~~--~~~~~~ 80 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLE---EYNGSRFCFGC-------QGPFPKPPVSPFD--ELKDSH 80 (112)
T ss_pred CCcCCcCCCEEeccchHHHh--hhccCCCccccccccc---ccCCCCcccCc-------CCCCCCccccccc--cccccc
Confidence 57899999999888888765 233 112100000 01111236666 7777654311100 012234
Q ss_pred ccccCcCCccccChhhHHHHHHH
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
.|+|..|...|-..-+.-.|...
T Consensus 81 ~y~C~~C~~~FC~dCD~fiHe~L 103 (112)
T TIGR00622 81 RYVCAVCKNVFCVDCDVFVHESL 103 (112)
T ss_pred ceeCCCCCCccccccchhhhhhc
Confidence 69999999999877777777544
No 106
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.90 E-value=7.8 Score=37.92 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=10.7
Q ss_pred CCceeeCCCCCccC
Q 014855 120 RKKVYVCPEPTCVH 133 (417)
Q Consensus 120 ~~k~~~C~~C~C~~ 133 (417)
|.|-..|..|++.|
T Consensus 207 G~RyL~CslC~teW 220 (305)
T TIGR01562 207 GLRYLSCSLCATEW 220 (305)
T ss_pred CceEEEcCCCCCcc
Confidence 67888999996633
No 107
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=49.69 E-value=4.7 Score=39.53 Aligned_cols=27 Identities=19% Similarity=0.726 Sum_probs=21.8
Q ss_pred cCCCCceeccc--ccccccChHHHHHHHH
Q 014855 77 LMATNRFLCEI--CNKGFQRDQNLQLHRR 103 (417)
Q Consensus 77 ~~~~k~~~C~~--Cgk~F~~~~~L~~H~~ 103 (417)
....|+|+|.+ |.+.+.....|+.|..
T Consensus 344 ~~~~~~~~~~vp~~~~~~~n~ng~~~~~~ 372 (442)
T KOG4124|consen 344 VVVDKPYKCPVPNCDKAYKNQNGLKYHKL 372 (442)
T ss_pred EEecCCCCCCCCcchhhcccCcceeeccc
Confidence 34468899976 9999999889988854
No 108
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.26 E-value=14 Score=23.56 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=6.8
Q ss_pred CccccCcCCc
Q 014855 157 KKWKCEKCSK 166 (417)
Q Consensus 157 kp~~C~~C~k 166 (417)
.|..|++||.
T Consensus 17 ~p~~CP~Cg~ 26 (34)
T cd00729 17 APEKCPICGA 26 (34)
T ss_pred CCCcCcCCCC
Confidence 4567777764
No 109
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=47.93 E-value=69 Score=32.40 Aligned_cols=68 Identities=21% Similarity=0.507 Sum_probs=39.8
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCC------------Ccccc--CcCCccccChhhHHHHHHHhCCC-
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE------------KKWKC--EKCSKKYAVQSDWKAHSKICGTR- 184 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~e------------kp~~C--~~C~k~F~~~~~L~~H~~~~~ek- 184 (417)
+...|.|..--| ...+..+..+.+|...|... .-|.| .+|.| .-++...|-..|.++
T Consensus 268 ~rEhyhcl~e~C-----~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~ 339 (480)
T KOG4377|consen 268 GREHYHCLNEYC-----FYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKR 339 (480)
T ss_pred cchhhcccCccc-----cccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccc
Confidence 455677765544 55555588999999888642 12567 45887 333444444333222
Q ss_pred -------ceeec-CC--CccC
Q 014855 185 -------EYKCD-CG--KLFS 195 (417)
Q Consensus 185 -------p~~C~-C~--k~F~ 195 (417)
-|.|. || .+|.
T Consensus 340 n~GfrrthfhC~r~gCTdtfK 360 (480)
T KOG4377|consen 340 NNGFRRTHFHCQRIGCTDTFK 360 (480)
T ss_pred cCceecceeEEeccCCccccc
Confidence 37786 55 5554
No 110
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=47.00 E-value=7.7 Score=38.10 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=25.0
Q ss_pred CCccccCcCCccccChhhHHHHHHH-hCCCcee
Q 014855 156 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYK 187 (417)
Q Consensus 156 ekp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~ 187 (417)
+.-|.|++|++.-.+...|..|... |-+-.+.
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~ 109 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTS 109 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccCcc
Confidence 4568999999988888899999877 7665443
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=46.99 E-value=15 Score=40.30 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=7.6
Q ss_pred CCCccccCcCCcc
Q 014855 155 GEKKWKCEKCSKK 167 (417)
Q Consensus 155 ~ekp~~C~~C~k~ 167 (417)
...|..|+.||..
T Consensus 472 ~~~p~~Cp~Cgs~ 484 (730)
T COG1198 472 EPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCC
Confidence 3456666666643
No 112
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=46.40 E-value=12 Score=32.37 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=26.8
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCcccc
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA 169 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~ 169 (417)
...-|.|+.| +..|.....+.. .+. +..|.|+.||....
T Consensus 96 ~~~~Y~Cp~C-------~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 96 NNAYYKCPNC-------QSKYTFLEANQL---LDM-DGTFTCPRCGEELE 134 (147)
T ss_pred CCcEEECcCC-------CCEeeHHHHHHh---cCC-CCcEECCCCCCEEE
Confidence 5678999999 888876544332 011 34499999998764
No 113
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=46.37 E-value=17 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=14.2
Q ss_pred CccccCcCCccc------cChhhHHHHHHH
Q 014855 157 KKWKCEKCSKKY------AVQSDWKAHSKI 180 (417)
Q Consensus 157 kp~~C~~C~k~F------~~~~~L~~H~~~ 180 (417)
--.+|..|+|-| ...+++..|+..
T Consensus 13 ~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~ 42 (152)
T PF09416_consen 13 CVVKCNTCNKWFCNGRGNTSGSHIVNHLVR 42 (152)
T ss_dssp CEEEETTTTEEEES--TTSSS-HHHHHHHH
T ss_pred cEeEcCCCCcEeecCCCCCcccHHHHHHHH
Confidence 345666666655 355677777665
No 114
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=46.11 E-value=9 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=0.0
Q ss_pred ccccCCCCceecccccc-cccChHHHHHHHH
Q 014855 74 PKSLMATNRFLCEICNK-GFQRDQNLQLHRR 103 (417)
Q Consensus 74 ~~~~~~~k~~~C~~Cgk-~F~~~~~L~~H~~ 103 (417)
.+.|.-.+.|.|++||. +|.-+..+.+|..
T Consensus 93 YKLhGL~~ey~CEICGN~~Y~GrkaFekHF~ 123 (196)
T PF11931_consen 93 YKLHGLGVEYKCEICGNQSYKGRKAFEKHFQ 123 (196)
T ss_dssp -------------------------------
T ss_pred HHHhCCCCeeeeEeCCCcceecHHHHHHhcC
Confidence 66777788899999985 5667888888853
No 115
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=45.79 E-value=3e+02 Score=26.99 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=45.8
Q ss_pred ccccccCCceeeCCCCCcc------CCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHHhCCCcee
Q 014855 114 RTNKVERKKVYVCPEPTCV------HHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYK 187 (417)
Q Consensus 114 ~~~~~~~~k~~~C~~C~C~------~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~ 187 (417)
++++..+.+.+-|+.|+-. -.-|.-+|..... +.|. .-.|..|..... +=....-+..|.
T Consensus 81 ~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CA-----r~~~---dK~Cp~C~d~Vq------rIeq~~~g~iFm 146 (389)
T KOG2932|consen 81 RGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECA-----RSDS---DKICPLCDDRVQ------RIEQIMMGGIFM 146 (389)
T ss_pred ccccccCcceEeecccCCcceeeecccccchhhhhhhh-----hcCc---cccCcCcccHHH------HHHHhcccceEE
Confidence 4445557778889998420 0111223322221 2222 225777754321 111124567899
Q ss_pred ec----CCCccCCchHHHHHHhhcc
Q 014855 188 CD----CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 188 C~----C~k~F~~~~~L~~H~~~h~ 208 (417)
|. |.++|.....|..|+..-|
T Consensus 147 C~~~~GC~RTyLsqrDlqAHInhrH 171 (389)
T KOG2932|consen 147 CAAPHGCLRTYLSQRDLQAHINHRH 171 (389)
T ss_pred eecchhHHHHHhhHHHHHHHhhhhh
Confidence 93 9999999999999986544
No 116
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=45.77 E-value=22 Score=34.53 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=31.5
Q ss_pred cCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCchHHHHHHhhcc
Q 014855 161 CEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 161 C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~L~~H~~~h~ 208 (417)
|-.|.-.|.....-..-. .+....|.|+ |...|-.....-.|...|.
T Consensus 365 Cf~CQ~~fp~~~~~~~~~-~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 365 CFVCQGPFPKPPVSPFDE-STSSGRYQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred ceeccCCCCCCCCCcccc-cccccceechhhhhhhhhhhHHHHHHHHhh
Confidence 777777775443211110 1334579999 9999999888888887774
No 117
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=45.02 E-value=15 Score=24.87 Aligned_cols=13 Identities=15% Similarity=0.664 Sum_probs=10.2
Q ss_pred ceecccccccccC
Q 014855 82 RFLCEICNKGFQR 94 (417)
Q Consensus 82 ~~~C~~Cgk~F~~ 94 (417)
.|+|..||..|..
T Consensus 3 ~y~C~~CG~~~~~ 15 (46)
T PRK00398 3 EYKCARCGREVEL 15 (46)
T ss_pred EEECCCCCCEEEE
Confidence 5888888888764
No 118
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.67 E-value=83 Score=34.65 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=4.2
Q ss_pred cCCCCceec
Q 014855 77 LMATNRFLC 85 (417)
Q Consensus 77 ~~~~k~~~C 85 (417)
+...+.+.|
T Consensus 153 l~t~~l~~C 161 (1102)
T KOG1924|consen 153 LSTKKLLEC 161 (1102)
T ss_pred cccccHHHH
Confidence 344444555
No 119
>PF14353 CpXC: CpXC protein
Probab=44.65 E-value=20 Score=30.02 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=11.7
Q ss_pred Cceeec-CCCccCCchHHHHHH
Q 014855 184 REYKCD-CGKLFSRRDSFITHR 204 (417)
Q Consensus 184 kp~~C~-C~k~F~~~~~L~~H~ 204 (417)
..|.|+ ||+.|.-...+.-|-
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY~D 58 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLYHD 58 (128)
T ss_pred CEEECCCCCCceecCCCEEEEc
Confidence 346666 766665554444443
No 120
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=43.80 E-value=8.1 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=13.1
Q ss_pred CceecccccccccChHH
Q 014855 81 NRFLCEICNKGFQRDQN 97 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~ 97 (417)
.-|+|..||..|.....
T Consensus 4 Yey~C~~Cg~~fe~~~~ 20 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQS 20 (42)
T ss_pred EEEEeCCCCCEEEEEEE
Confidence 35999999999976543
No 121
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=43.21 E-value=27 Score=32.79 Aligned_cols=77 Identities=18% Similarity=0.394 Sum_probs=43.8
Q ss_pred ChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhh
Q 014855 94 RDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSD 173 (417)
Q Consensus 94 ~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~ 173 (417)
+..+|+.+-+.+.. ......+-|.|..| +... ..+.-....--+|..|.+.|.---.
T Consensus 91 Te~Nlrm~d~a~~~--------~ip~~drqFaC~~C-------d~~W--------wRrvp~rKeVSRCr~C~~rYDPVP~ 147 (278)
T PF15135_consen 91 TEENLRMFDDAQEN--------LIPSVDRQFACSSC-------DHMW--------WRRVPQRKEVSRCRKCRKRYDPVPC 147 (278)
T ss_pred hHHHHHHhhhhhhc--------cccccceeeecccc-------chHH--------HhccCcccccccccccccccCCCcc
Confidence 34567766655540 00113367999999 3211 1122233345689999888743221
Q ss_pred HHHHHHHhCCCceeec-CCCccCCc
Q 014855 174 WKAHSKICGTREYKCD-CGKLFSRR 197 (417)
Q Consensus 174 L~~H~~~~~ekp~~C~-C~k~F~~~ 197 (417)
-+..|--.|.|. |+..|.-.
T Consensus 148 ----dkmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 148 ----DKMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred ----ccccceeeeecccccccchhh
Confidence 011456679998 99999754
No 122
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=42.95 E-value=21 Score=25.84 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=4.7
Q ss_pred ceeeCCCC
Q 014855 122 KVYVCPEP 129 (417)
Q Consensus 122 k~~~C~~C 129 (417)
-.|.|+.|
T Consensus 26 v~F~CPnC 33 (61)
T COG2888 26 VKFPCPNC 33 (61)
T ss_pred eEeeCCCC
Confidence 34666666
No 123
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=42.41 E-value=15 Score=32.98 Aligned_cols=35 Identities=11% Similarity=0.388 Sum_probs=26.7
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccC
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV 170 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~ 170 (417)
...-|.|+.| ++.|.....+. .-|.|+.||.....
T Consensus 114 ~~~~Y~Cp~C-------~~rytf~eA~~---------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 114 NNMFFFCPNC-------HIRFTFDEAME---------YGFRCPQCGEMLEE 148 (178)
T ss_pred CCCEEECCCC-------CcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence 4567999999 88887776653 36999999976543
No 124
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.84 E-value=13 Score=36.51 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=22.7
Q ss_pred CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccC
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVH 133 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~ 133 (417)
+..-.|++||..=.- + + .+..... |.+-..|..|++.|
T Consensus 185 ~~~~~CPvCGs~P~~-s-~-v~~~~~~-------------G~RyL~CslC~teW 222 (309)
T PRK03564 185 EQRQFCPVCGSMPVS-S-V-VQIGTTQ-------------GLRYLHCNLCESEW 222 (309)
T ss_pred cCCCCCCCCCCcchh-h-e-eeccCCC-------------CceEEEcCCCCCcc
Confidence 356789999975321 1 1 1122222 67888999996633
No 125
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=41.72 E-value=34 Score=30.05 Aligned_cols=34 Identities=12% Similarity=0.457 Sum_probs=27.1
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCcccc
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA 169 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~ 169 (417)
...-|.|+.| +..|+....+. .-|.|+.||....
T Consensus 106 ~~~~Y~Cp~c-------~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 106 NNMFFICPNM-------CVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred CCCeEECCCC-------CcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 5677999999 88888777775 3699999997654
No 126
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=40.30 E-value=29 Score=35.41 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=26.2
Q ss_pred ccccCCCCceeccccc-ccccChHHHHHHHH
Q 014855 74 PKSLMATNRFLCEICN-KGFQRDQNLQLHRR 103 (417)
Q Consensus 74 ~~~~~~~k~~~C~~Cg-k~F~~~~~L~~H~~ 103 (417)
.+.|.-..-|.|++|| .+|.-+..+.+|..
T Consensus 393 yKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 393 YKLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred HhhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 6678888899999999 89999999999954
No 127
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=39.01 E-value=20 Score=30.20 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=25.8
Q ss_pred eeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHH
Q 014855 123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWK 175 (417)
Q Consensus 123 ~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~ 175 (417)
...|+.| +++|... +..|..|++||..|.....++
T Consensus 9 Kr~Cp~c-------g~kFYDL-----------nk~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 9 KRICPNT-------GSKFYDL-----------NRRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred cccCCCc-------Ccccccc-----------CCCCccCCCcCCccCcchhhc
Confidence 3689999 8888543 347899999999986654433
No 128
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=38.90 E-value=14 Score=32.01 Aligned_cols=33 Identities=27% Similarity=0.861 Sum_probs=19.9
Q ss_pred CCccccCcCCccccChhhHHHHHHH-hCCCceeec-CCCc
Q 014855 156 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKL 193 (417)
Q Consensus 156 ekp~~C~~C~k~F~~~~~L~~H~~~-~~ekp~~C~-C~k~ 193 (417)
..+|.|. |+..|.+. ++|-.. -|+ .|.|. |+-.
T Consensus 115 ~~~Y~C~-C~q~~l~~---RRhn~~~~g~-~YrC~~C~gk 149 (156)
T COG3091 115 TYPYRCQ-CQQHYLRI---RRHNTVRRGE-VYRCGKCGGK 149 (156)
T ss_pred ceeEEee-cCCccchh---hhcccccccc-eEEeccCCce
Confidence 3467887 87776543 344333 455 78887 7654
No 129
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=38.74 E-value=13 Score=31.57 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.5
Q ss_pred ceecccccccccChH
Q 014855 82 RFLCEICNKGFQRDQ 96 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~ 96 (417)
|++|..||+.|..-.
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 578999999998654
No 130
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=38.74 E-value=9 Score=29.04 Aligned_cols=39 Identities=15% Similarity=0.424 Sum_probs=20.2
Q ss_pred cccCcCCccccChhhHHHHHHHhCCCceeec---CCCccCCch
Q 014855 159 WKCEKCSKKYAVQSDWKAHSKICGTREYKCD---CGKLFSRRD 198 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~---C~k~F~~~~ 198 (417)
+.|+.||..-..+..-..+.. ..++-+.|. ||.+|....
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~e 43 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYE 43 (72)
T ss_pred ccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEE
Confidence 467777755433222111111 344557773 888887653
No 131
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=38.71 E-value=65 Score=35.41 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=2.3
Q ss_pred cceeee
Q 014855 395 DLAICC 400 (417)
Q Consensus 395 ~~~~~~ 400 (417)
||.-+|
T Consensus 638 d~s~~c 643 (1102)
T KOG1924|consen 638 DLSENC 643 (1102)
T ss_pred ccCccc
Confidence 333333
No 132
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.30 E-value=19 Score=36.72 Aligned_cols=30 Identities=23% Similarity=0.676 Sum_probs=20.1
Q ss_pred ccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCCchH
Q 014855 160 KCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDS 199 (417)
Q Consensus 160 ~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~~~~ 199 (417)
+|+.||.+. +..|.+-|+|. ||.++.....
T Consensus 352 ~Cp~Cg~~m----------~S~G~~g~rC~kCg~~~~~~~~ 382 (421)
T COG1571 352 VCPRCGGRM----------KSAGRNGFRCKKCGTRARETLI 382 (421)
T ss_pred CCCccCCch----------hhcCCCCcccccccccCCcccc
Confidence 688888653 33455578888 8888776543
No 133
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=37.83 E-value=14 Score=29.22 Aligned_cols=10 Identities=50% Similarity=1.637 Sum_probs=4.8
Q ss_pred cccCcCCccc
Q 014855 159 WKCEKCSKKY 168 (417)
Q Consensus 159 ~~C~~C~k~F 168 (417)
|.|..|++.|
T Consensus 54 W~C~~C~~~~ 63 (91)
T TIGR00280 54 WTCRKCGAKF 63 (91)
T ss_pred EEcCCCCCEE
Confidence 4444444444
No 134
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=37.77 E-value=27 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=11.7
Q ss_pred ccCcCCccccChhhHHHHHH
Q 014855 160 KCEKCSKKYAVQSDWKAHSK 179 (417)
Q Consensus 160 ~C~~C~k~F~~~~~L~~H~~ 179 (417)
.|++|++.+ ....+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 467777766 4455666654
No 135
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=37.62 E-value=19 Score=28.44 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=21.9
Q ss_pred CceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCC
Q 014855 81 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHD 135 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C~~~~ 135 (417)
+|-.|..||..|.... -++|-+|+.|...|..
T Consensus 57 ~Pa~CkkCGfef~~~~-----------------------ik~pSRCP~CKSE~Ie 88 (97)
T COG3357 57 RPARCKKCGFEFRDDK-----------------------IKKPSRCPKCKSEWIE 88 (97)
T ss_pred cChhhcccCccccccc-----------------------cCCcccCCcchhhccc
Confidence 5678999999987621 2467889998544433
No 136
>PF15269 zf-C2H2_7: Zinc-finger
Probab=37.51 E-value=35 Score=23.23 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCCceecccccccccChHHHHHHHHh
Q 014855 79 ATNRFLCEICNKGFQRDQNLQLHRRG 104 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~~~L~~H~~~ 104 (417)
..-.|+|-.|......++.|-.||+-
T Consensus 17 kp~~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 17 KPFKYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred CCccceeecCCcccchHHHHHHHHHH
Confidence 34458899999999999999999874
No 137
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=37.31 E-value=47 Score=32.56 Aligned_cols=25 Identities=20% Similarity=0.665 Sum_probs=19.7
Q ss_pred Cceeec-CCCccCCchHHHHHHhhcc
Q 014855 184 REYKCD-CGKLFSRRDSFITHRAFCD 208 (417)
Q Consensus 184 kp~~C~-C~k~F~~~~~L~~H~~~h~ 208 (417)
..|.|. |...|-.--+.-.|...|.
T Consensus 344 ~~y~C~~Ck~~FCldCDv~iHesLh~ 369 (378)
T KOG2807|consen 344 GRYRCESCKNVFCLDCDVFIHESLHN 369 (378)
T ss_pred CcEEchhccceeeccchHHHHhhhhc
Confidence 348898 9999988888788877764
No 138
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=36.67 E-value=16 Score=33.82 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=24.7
Q ss_pred cCCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCC
Q 014855 119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK 157 (417)
Q Consensus 119 ~~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ek 157 (417)
..+..|.|+.| +|.|.-...+.+|+...|.|+
T Consensus 73 ~~~~K~~C~lc-------~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 73 EDEDKWRCPLC-------GKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SSSEEEEE-SS-------S-EESSHHHHHHHHHHH-HHH
T ss_pred HcCCEECCCCC-------CcccCChHHHHHHHhhcCHHH
Confidence 35677999999 999999999999999877653
No 139
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=36.14 E-value=28 Score=23.58 Aligned_cols=11 Identities=18% Similarity=0.742 Sum_probs=6.8
Q ss_pred CccccCcCCcc
Q 014855 157 KKWKCEKCSKK 167 (417)
Q Consensus 157 kp~~C~~C~k~ 167 (417)
.+.+|+.||..
T Consensus 18 ~~irC~~CG~r 28 (44)
T smart00659 18 DVVRCRECGYR 28 (44)
T ss_pred CceECCCCCce
Confidence 44667777654
No 140
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.76 E-value=26 Score=38.55 Aligned_cols=29 Identities=17% Similarity=0.523 Sum_probs=20.9
Q ss_pred hhccCCCccccCcCCccccChhhHHHHHHHhCCCceeec-CCCc
Q 014855 151 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKL 193 (417)
Q Consensus 151 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~ 193 (417)
..|...+..+|..||+. ...|..|. ||..
T Consensus 455 t~H~~~~~L~CH~Cg~~--------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 455 TLHKATGQLRCHYCGYQ--------------EPIPQSCPECGSE 484 (730)
T ss_pred EEecCCCeeEeCCCCCC--------------CCCCCCCCCCCCC
Confidence 34555567889999864 34789999 9865
No 141
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=35.68 E-value=34 Score=24.81 Aligned_cols=8 Identities=25% Similarity=0.849 Sum_probs=4.7
Q ss_pred ceeeCCCC
Q 014855 122 KVYVCPEP 129 (417)
Q Consensus 122 k~~~C~~C 129 (417)
-.|.|+.|
T Consensus 24 ~~F~CPnC 31 (59)
T PRK14890 24 VKFLCPNC 31 (59)
T ss_pred CEeeCCCC
Confidence 34666666
No 142
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=35.23 E-value=13 Score=24.16 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=6.6
Q ss_pred CccccCcCCcc
Q 014855 157 KKWKCEKCSKK 167 (417)
Q Consensus 157 kp~~C~~C~k~ 167 (417)
..-.|+.||..
T Consensus 25 ~~~~CP~Cg~~ 35 (41)
T smart00834 25 PLATCPECGGD 35 (41)
T ss_pred CCCCCCCCCCc
Confidence 44567777653
No 143
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=35.17 E-value=13 Score=25.76 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.9
Q ss_pred CccccCcCCc
Q 014855 157 KKWKCEKCSK 166 (417)
Q Consensus 157 kp~~C~~C~k 166 (417)
..-.|+.||.
T Consensus 25 ~~~~CP~Cg~ 34 (52)
T TIGR02605 25 PLATCPECGG 34 (52)
T ss_pred CCCCCCCCCC
Confidence 3455777764
No 144
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=34.68 E-value=31 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=19.2
Q ss_pred ceecccccccccC--hHHHHHHHHhcC
Q 014855 82 RFLCEICNKGFQR--DQNLQLHRRGHN 106 (417)
Q Consensus 82 ~~~C~~Cgk~F~~--~~~L~~H~~~H~ 106 (417)
.-+|..||..|.. ...-+.|.+-|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 3589999999885 456678887774
No 145
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=34.13 E-value=24 Score=35.80 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=27.1
Q ss_pred cCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCC
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPT 130 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~ 130 (417)
-+...-|.|+.|++.|.....|+.--. ....|.|..|+
T Consensus 123 ~t~~~~Y~Cp~C~kkyt~Lea~~L~~~----------------~~~~F~C~~C~ 160 (436)
T KOG2593|consen 123 DTNVAGYVCPNCQKKYTSLEALQLLDN----------------ETGEFHCENCG 160 (436)
T ss_pred ccccccccCCccccchhhhHHHHhhcc----------------cCceEEEecCC
Confidence 344567999999999988776654321 23569999994
No 146
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=34.11 E-value=24 Score=28.48 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.6
Q ss_pred ceecccccccccChH
Q 014855 82 RFLCEICNKGFQRDQ 96 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~ 96 (417)
++.|..||+.|..-.
T Consensus 2 pH~CtrCG~vf~~g~ 16 (112)
T COG3364 2 PHQCTRCGEVFDDGS 16 (112)
T ss_pred Cceeccccccccccc
Confidence 578999999998743
No 147
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=33.49 E-value=34 Score=32.38 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=13.1
Q ss_pred CCCceecccccccccChHHHHHHHH
Q 014855 79 ATNRFLCEICNKGFQRDQNLQLHRR 103 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~~~L~~H~~ 103 (417)
+.+.|+|..|....-....| .|+.
T Consensus 139 GGrif~CsfC~~flCEDDQF-EHQA 162 (314)
T PF06524_consen 139 GGRIFKCSFCDNFLCEDDQF-EHQA 162 (314)
T ss_pred CCeEEEeecCCCeeeccchh-hhhh
Confidence 44667787777644433333 3443
No 148
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=32.64 E-value=11 Score=24.91 Aligned_cols=10 Identities=30% Similarity=1.208 Sum_probs=4.6
Q ss_pred cccCcCCccc
Q 014855 159 WKCEKCSKKY 168 (417)
Q Consensus 159 ~~C~~C~k~F 168 (417)
|.|..|++.|
T Consensus 29 y~C~~C~~~w 38 (40)
T smart00440 29 YVCTKCGHRW 38 (40)
T ss_pred EEeCCCCCEe
Confidence 4444444443
No 149
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=32.14 E-value=18 Score=28.62 Aligned_cols=10 Identities=50% Similarity=1.674 Sum_probs=5.0
Q ss_pred cccCcCCccc
Q 014855 159 WKCEKCSKKY 168 (417)
Q Consensus 159 ~~C~~C~k~F 168 (417)
|.|..|++.|
T Consensus 55 W~C~~C~~~~ 64 (90)
T PRK03976 55 WECRKCGAKF 64 (90)
T ss_pred EEcCCCCCEE
Confidence 4555555444
No 150
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.95 E-value=26 Score=30.69 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=15.2
Q ss_pred CceecccccccccChHHHH
Q 014855 81 NRFLCEICNKGFQRDQNLQ 99 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~L~ 99 (417)
+.++|..||+.|.....+.
T Consensus 27 ~~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 27 RRRECLACGKRFTTFERVE 45 (154)
T ss_pred eeeeccccCCcceEeEecc
Confidence 4599999999998866544
No 151
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=31.83 E-value=18 Score=28.68 Aligned_cols=10 Identities=70% Similarity=1.886 Sum_probs=5.6
Q ss_pred cccCcCCccc
Q 014855 159 WKCEKCSKKY 168 (417)
Q Consensus 159 ~~C~~C~k~F 168 (417)
|.|..|++.|
T Consensus 54 W~C~~C~~~~ 63 (90)
T PF01780_consen 54 WKCKKCGKKF 63 (90)
T ss_dssp EEETTTTEEE
T ss_pred eecCCCCCEE
Confidence 5555555554
No 152
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.57 E-value=70 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=13.4
Q ss_pred ceecccccccccChHHHHHH
Q 014855 82 RFLCEICNKGFQRDQNLQLH 101 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~~~L~~H 101 (417)
|-+|++|+-..-..-+|.+-
T Consensus 290 P~eCpiC~ltLVss~hLARS 309 (378)
T KOG2807|consen 290 PIECPICSLTLVSSPHLARS 309 (378)
T ss_pred CccCCccceeEecchHHHHH
Confidence 45677777777777777653
No 153
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=31.07 E-value=28 Score=24.24 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=6.5
Q ss_pred CccccCcCCcccc
Q 014855 157 KKWKCEKCSKKYA 169 (417)
Q Consensus 157 kp~~C~~C~k~F~ 169 (417)
+.+.|..||..|.
T Consensus 3 k~l~C~dCg~~Fv 15 (49)
T PF13451_consen 3 KTLTCKDCGAEFV 15 (49)
T ss_pred eeEEcccCCCeEE
Confidence 3445555555443
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.95 E-value=36 Score=37.11 Aligned_cols=9 Identities=33% Similarity=1.593 Sum_probs=4.5
Q ss_pred ccccCcCCc
Q 014855 158 KWKCEKCSK 166 (417)
Q Consensus 158 p~~C~~C~k 166 (417)
++.|+.||.
T Consensus 422 p~~Cp~Cgs 430 (665)
T PRK14873 422 DWRCPRCGS 430 (665)
T ss_pred CccCCCCcC
Confidence 445555543
No 155
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=30.87 E-value=24 Score=27.93 Aligned_cols=12 Identities=42% Similarity=1.182 Sum_probs=6.4
Q ss_pred ccccCcCCcccc
Q 014855 158 KWKCEKCSKKYA 169 (417)
Q Consensus 158 p~~C~~C~k~F~ 169 (417)
.|.|..|++.|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PTZ00255 54 IWRCKGCKKTVA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 355555555553
No 156
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.72 E-value=68 Score=28.72 Aligned_cols=17 Identities=18% Similarity=0.556 Sum_probs=11.0
Q ss_pred CCCceecccccccccCh
Q 014855 79 ATNRFLCEICNKGFQRD 95 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~ 95 (417)
.+..|+|++|-..|..+
T Consensus 128 ~~~~~~CPiCl~~~sek 144 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK 144 (187)
T ss_pred cccccCCCceecchhhc
Confidence 34458888887766543
No 157
>PF15269 zf-C2H2_7: Zinc-finger
Probab=30.53 E-value=34 Score=23.29 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=16.8
Q ss_pred cccCcCCccccChhhHHHHHHH
Q 014855 159 WKCEKCSKKYAVQSDWKAHSKI 180 (417)
Q Consensus 159 ~~C~~C~k~F~~~~~L~~H~~~ 180 (417)
|+|-.|......+++|-.||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6777777777778888888765
No 158
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.41 E-value=42 Score=38.83 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=6.6
Q ss_pred eeccccccc
Q 014855 83 FLCEICNKG 91 (417)
Q Consensus 83 ~~C~~Cgk~ 91 (417)
++|+.||..
T Consensus 668 rkCPkCG~~ 676 (1337)
T PRK14714 668 RRCPSCGTE 676 (1337)
T ss_pred EECCCCCCc
Confidence 778888763
No 159
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=30.39 E-value=46 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=14.4
Q ss_pred CCCceecccccccccChHHH
Q 014855 79 ATNRFLCEICNKGFQRDQNL 98 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~~~L 98 (417)
+.+.|+|++|.+....+.-|
T Consensus 77 d~~lYeCnIC~etS~ee~FL 96 (140)
T PF05290_consen 77 DPKLYECNICKETSAEERFL 96 (140)
T ss_pred CCCceeccCcccccchhhcC
Confidence 34789999998887665433
No 160
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.80 E-value=26 Score=26.70 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.7
Q ss_pred cCCCCceecccccccccChHHHHHHHH
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLHRR 103 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~ 103 (417)
++....|+|..||..| .+..||+
T Consensus 7 lMPtY~Y~c~~cg~~~----dvvq~~~ 29 (82)
T COG2331 7 LMPTYSYECTECGNRF----DVVQAMT 29 (82)
T ss_pred cccceEEeecccchHH----HHHHhcc
Confidence 4556789999999987 4555554
No 161
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=28.07 E-value=44 Score=23.96 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=20.4
Q ss_pred CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCCCc
Q 014855 80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTC 131 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C~C 131 (417)
++|++...||-.|....-+ .+++ ..+..+|++-||
T Consensus 22 ~~PV~s~~C~H~fek~aI~-~~i~----------------~~~~~~CPv~GC 56 (57)
T PF11789_consen 22 EDPVKSKKCGHTFEKEAIL-QYIQ----------------RNGSKRCPVAGC 56 (57)
T ss_dssp SSEEEESSS--EEEHHHHH-HHCT----------------TTS-EE-SCCC-
T ss_pred hCCcCcCCCCCeecHHHHH-HHHH----------------hcCCCCCCCCCC
Confidence 4678888999999865543 3331 356689999776
No 162
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.07 E-value=58 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=9.8
Q ss_pred ceecccccccccC
Q 014855 82 RFLCEICNKGFQR 94 (417)
Q Consensus 82 ~~~C~~Cgk~F~~ 94 (417)
..+|..||+.|..
T Consensus 5 ~~~C~~Cg~~~~~ 17 (54)
T PF14446_consen 5 GCKCPVCGKKFKD 17 (54)
T ss_pred CccChhhCCcccC
Confidence 3578899988854
No 163
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=27.90 E-value=40 Score=28.11 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=24.7
Q ss_pred cCCCCceecccccccccChHHHHHHHHhc
Q 014855 77 LMATNRFLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 77 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
+.+...|-|-.|.+-|.+...|+.|.++-
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~ktK 80 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKTK 80 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhcc
Confidence 44556799999999999999999998753
No 164
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.70 E-value=28 Score=20.47 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=8.4
Q ss_pred Cceecccccc
Q 014855 81 NRFLCEICNK 90 (417)
Q Consensus 81 k~~~C~~Cgk 90 (417)
..|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4699999985
No 165
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=27.59 E-value=40 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=12.1
Q ss_pred ceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCC
Q 014855 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE 156 (417)
Q Consensus 122 k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~e 156 (417)
.-..|-+| |+.|+. |++|++.|+|-
T Consensus 71 d~i~clec-------Gk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 71 DYIICLEC-------GKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp S-EE-TBT---------EESB---HHHHHHHTT-S
T ss_pred CeeEEccC-------Ccccch---HHHHHHHccCC
Confidence 34566666 666654 36777777654
No 166
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.58 E-value=21 Score=34.67 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhccCCCccccCcCCccccChhhHHHHHHHhCCCceeec-CCC
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGK 192 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k 192 (417)
|.+-..|..|+..|+ | +..+|..||..-...-.+..-...-+.+.+.|+ |+.
T Consensus 194 G~R~L~Cs~C~t~W~-----~----------------~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 194 GKRYLHCSLCGTEWR-----F----------------VRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp -EEEEEETTT--EEE-----------------------TTS-TTT---SS-EEE--------SEEEEEETTTTE
T ss_pred ccEEEEcCCCCCeee-----e----------------cCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccc
Confidence 457778888854221 1 235799998764333222111111355778888 873
No 167
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.50 E-value=29 Score=21.86 Aligned_cols=10 Identities=20% Similarity=0.923 Sum_probs=5.6
Q ss_pred ccccCcCCcc
Q 014855 158 KWKCEKCSKK 167 (417)
Q Consensus 158 p~~C~~C~k~ 167 (417)
+.+|..||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 4567767654
No 168
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=19 Score=39.04 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=9.1
Q ss_pred Cceeec-CCCccCCchHHH
Q 014855 184 REYKCD-CGKLFSRRDSFI 201 (417)
Q Consensus 184 kp~~C~-C~k~F~~~~~L~ 201 (417)
+--+|+ |+..|.-.+-+.
T Consensus 677 RqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 677 RQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hcCCCCCCCCCCCcccccc
Confidence 344555 555555544433
No 169
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.03 E-value=23 Score=37.70 Aligned_cols=6 Identities=50% Similarity=0.767 Sum_probs=2.4
Q ss_pred cccCCC
Q 014855 270 QHHIPP 275 (417)
Q Consensus 270 qq~~p~ 275 (417)
++.+|+
T Consensus 86 ~P~~~~ 91 (1179)
T KOG3648|consen 86 QPPQPP 91 (1179)
T ss_pred CCCCCC
Confidence 344443
No 170
>PHA00626 hypothetical protein
Probab=26.03 E-value=35 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=13.9
Q ss_pred CCceecccccccccChH
Q 014855 80 TNRFLCEICNKGFQRDQ 96 (417)
Q Consensus 80 ~k~~~C~~Cgk~F~~~~ 96 (417)
...|+|+.||..|+...
T Consensus 21 snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 21 SDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CcceEcCCCCCeechhh
Confidence 46799999999997644
No 171
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.85 E-value=46 Score=27.26 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=8.9
Q ss_pred CCccccCcCCccc
Q 014855 156 EKKWKCEKCSKKY 168 (417)
Q Consensus 156 ekp~~C~~C~k~F 168 (417)
..|..|++||++|
T Consensus 24 rdPiVsPytG~s~ 36 (129)
T COG4530 24 RDPIVSPYTGKSY 36 (129)
T ss_pred CCccccCcccccc
Confidence 3566777777777
No 172
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=25.56 E-value=25 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.807 Sum_probs=16.9
Q ss_pred ccccCcCCccccChhhHHHHHHHhCCCceeec-CCCcc
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLF 194 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F 194 (417)
.|+|..|+..+. ++.|......|.|. |+-.|
T Consensus 112 ~y~C~~C~~~~~------~~rr~~~~~~y~C~~C~g~l 143 (146)
T smart00731 112 PYRCTGCGQRYL------RVRRSNNVSRYRCGKCGGKL 143 (146)
T ss_pred EEECCCCCCCCc------eEccccCcceEEcCCCCCEE
Confidence 577777776653 22222222557777 76554
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.47 E-value=49 Score=36.15 Aligned_cols=27 Identities=19% Similarity=0.620 Sum_probs=19.0
Q ss_pred hccCCCccccCcCCccccChhhHHHHHHHhCCCceeec-CCCc
Q 014855 152 RKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKL 193 (417)
Q Consensus 152 ~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~ 193 (417)
.|...+..+|..||+. ..++.|. ||..
T Consensus 404 ~h~~~~~l~Ch~CG~~---------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 404 LPSAGGTPRCRWCGRA---------------APDWRCPRCGSD 431 (665)
T ss_pred EecCCCeeECCCCcCC---------------CcCccCCCCcCC
Confidence 3445567889999853 2477899 9865
No 174
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=25.32 E-value=45 Score=20.71 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=4.4
Q ss_pred ccccCcCCc
Q 014855 158 KWKCEKCSK 166 (417)
Q Consensus 158 p~~C~~C~k 166 (417)
-|.|+.|+.
T Consensus 19 ~~vCp~C~~ 27 (30)
T PF08274_consen 19 LLVCPECGH 27 (30)
T ss_dssp SEEETTTTE
T ss_pred EEeCCcccc
Confidence 355555543
No 175
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=25.30 E-value=39 Score=33.38 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.4
Q ss_pred ccccCCCCceeccccc-ccccChHHHHHHHH
Q 014855 74 PKSLMATNRFLCEICN-KGFQRDQNLQLHRR 103 (417)
Q Consensus 74 ~~~~~~~k~~~C~~Cg-k~F~~~~~L~~H~~ 103 (417)
.+.|.-.+-|.|++|| ++|..+..+.+|..
T Consensus 366 ~klhgLd~ef~CEICgNyvy~GR~~FdrHF~ 396 (470)
T COG5188 366 CKLHGLDIEFECEICGNYVYYGRDRFDRHFE 396 (470)
T ss_pred HHhcCCCcceeeeecccccccchHHHHhhhh
Confidence 5667778889999999 88888888998854
No 176
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=25.17 E-value=39 Score=35.77 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCceeeCCCCCccCCCCCCcccCHHHHHHHHhhcc
Q 014855 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH 154 (417)
Q Consensus 120 ~~k~~~C~~C~C~~~~~~k~f~~~~~L~~H~~~H~ 154 (417)
..++..|..| |.+|.......+||..|.
T Consensus 415 ~~~pnqC~~C-------G~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 415 KDSPNQCKSC-------GLRFDDSEERSKHMDIHD 442 (579)
T ss_pred cCCcchhccc-------ccccccchhhhhHhhhhh
Confidence 4567899999 999999988888877775
No 177
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.90 E-value=59 Score=34.27 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=6.3
Q ss_pred CCccccCcCCc
Q 014855 156 EKKWKCEKCSK 166 (417)
Q Consensus 156 ekp~~C~~C~k 166 (417)
..+..|+.||.
T Consensus 251 ~~~~~Cp~C~s 261 (505)
T TIGR00595 251 PIPKTCPQCGS 261 (505)
T ss_pred CCCCCCCCCCC
Confidence 34556666654
No 178
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=24.72 E-value=39 Score=29.43 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 014855 79 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP 129 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~C 129 (417)
....|.|. |+..|-+.. +|-.+-. |+ .|.|..|
T Consensus 114 ~~~~Y~C~-C~q~~l~~R---Rhn~~~~-------------g~-~YrC~~C 146 (156)
T COG3091 114 TTYPYRCQ-CQQHYLRIR---RHNTVRR-------------GE-VYRCGKC 146 (156)
T ss_pred cceeEEee-cCCccchhh---hcccccc-------------cc-eEEeccC
Confidence 45679999 999986543 3433332 55 8999999
No 179
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.58 E-value=42 Score=23.91 Aligned_cols=10 Identities=20% Similarity=0.943 Sum_probs=4.5
Q ss_pred cccCcCCccc
Q 014855 159 WKCEKCSKKY 168 (417)
Q Consensus 159 ~~C~~C~k~F 168 (417)
|+|+.||..+
T Consensus 3 ~~CP~CG~~i 12 (54)
T TIGR01206 3 FECPDCGAEI 12 (54)
T ss_pred cCCCCCCCEE
Confidence 3444444443
No 180
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.27 E-value=88 Score=21.12 Aligned_cols=11 Identities=27% Similarity=1.078 Sum_probs=6.7
Q ss_pred CCccccCcCCc
Q 014855 156 EKKWKCEKCSK 166 (417)
Q Consensus 156 ekp~~C~~C~k 166 (417)
...|+|..|++
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 45567766654
No 181
>PRK04351 hypothetical protein; Provisional
Probab=24.18 E-value=42 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.750 Sum_probs=20.4
Q ss_pred ccccCcCCccccChhhHHHHHHHhCCCceeec-CCCccCC
Q 014855 158 KWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSR 196 (417)
Q Consensus 158 p~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C~-C~k~F~~ 196 (417)
.|.|..||..+.+. |.+..+.|.|. |+-.+..
T Consensus 112 ~Y~C~~Cg~~~~r~-------Rr~n~~~yrCg~C~g~L~~ 144 (149)
T PRK04351 112 LYECQSCGQQYLRK-------RRINTKRYRCGKCRGKLKL 144 (149)
T ss_pred EEECCCCCCEeeee-------eecCCCcEEeCCCCcEeee
Confidence 47888888666432 22455778888 8766543
No 182
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=23.28 E-value=18 Score=23.85 Aligned_cols=18 Identities=33% Similarity=0.789 Sum_probs=9.8
Q ss_pred HhhccCCCccccCcCCcc
Q 014855 150 FSRKHGEKKWKCEKCSKK 167 (417)
Q Consensus 150 ~~~H~~ekp~~C~~C~k~ 167 (417)
.....+.+.|+|.+|+..
T Consensus 16 ~~~~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 16 CQFDDGGKTWICNFCGTK 33 (40)
T ss_dssp SEEETTTTEEEETTT--E
T ss_pred ceEcCCCCEEECcCCCCc
Confidence 344445567777777754
No 183
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.94 E-value=31 Score=35.22 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=20.0
Q ss_pred ceeeCCCCCccCCCCCCcccCHHHHHHH-HhhccCCCccccCcCC
Q 014855 122 KVYVCPEPTCVHHDPSRALGDLTGIKKH-FSRKHGEKKWKCEKCS 165 (417)
Q Consensus 122 k~~~C~~C~C~~~~~~k~f~~~~~L~~H-~~~H~~ekp~~C~~C~ 165 (417)
..|.|+-- ++.+....--.+| .+.|+-..|--|+.||
T Consensus 91 VtF~CPGa-------dkg~dtDdpr~kHkf~~~tYssPTFCDhCG 128 (683)
T KOG0696|consen 91 VTFSCPGA-------DKGPDTDDPRSKHKFKIHTYSSPTFCDHCG 128 (683)
T ss_pred EEEECCCC-------CCCCCCCCcccccceeeeecCCCchhhhHH
Confidence 34566544 5555554444444 3455555565666665
No 184
>PF11494 Ta0938: Ta0938; InterPro: IPR021585 Ta0938 is a protein of unknown function however the structure has been determined. The protein has a novel fold and a putative Zn-binding motif. The structure has two different parts, one region contains a beta sheet flanked by two alpha helices and the other contains a bundle of loops which contain all cysteines in the protein. ; PDB: 2FQH_A.
Probab=22.94 E-value=25 Score=28.02 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=12.3
Q ss_pred CCCccccCcCCccccChhhHHHHHHHhCCCceee-c-CCCccCCc
Q 014855 155 GEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKC-D-CGKLFSRR 197 (417)
Q Consensus 155 ~ekp~~C~~C~k~F~~~~~L~~H~~~~~ekp~~C-~-C~k~F~~~ 197 (417)
|.|.-.|..||+.+..- +..+-|+|.|-| + |-+.|..-
T Consensus 11 g~ke~~CalCG~tWg~~-----y~Ev~G~rLfFCCd~ca~EF~nm 50 (105)
T PF11494_consen 11 GTKEMGCALCGATWGDY-----YEEVDGERLFFCCDDCAKEFKNM 50 (105)
T ss_dssp -SGGGS-SS---S---S-----S-B-TT--BSSS--SSSS-TTS-
T ss_pred ccccccccccCCcHHHH-----HHhhcCCEEEEEcHHHHHHHHHH
Confidence 34445666666665421 122345666554 4 66666653
No 185
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.82 E-value=37 Score=36.93 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=15.6
Q ss_pred CCccccCcCCccccChhhHHHH
Q 014855 156 EKKWKCEKCSKKYAVQSDWKAH 177 (417)
Q Consensus 156 ekp~~C~~C~k~F~~~~~L~~H 177 (417)
-|.-+|+.|+.+|...+.+..|
T Consensus 676 tRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 676 TRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhcCCCCCCCCCCCcccccccC
Confidence 3455888999888877665544
No 186
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=22.70 E-value=42 Score=22.04 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=12.1
Q ss_pred ceecccccccccCh
Q 014855 82 RFLCEICNKGFQRD 95 (417)
Q Consensus 82 ~~~C~~Cgk~F~~~ 95 (417)
+|+|..|++.|-.+
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 79999999999754
No 187
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.93 E-value=51 Score=33.67 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=15.3
Q ss_pred CCCccccCcCCccccChhhH
Q 014855 155 GEKKWKCEKCSKKYAVQSDW 174 (417)
Q Consensus 155 ~ekp~~C~~C~k~F~~~~~L 174 (417)
|.+-|+|+.||+.+......
T Consensus 364 G~~g~rC~kCg~~~~~~~~~ 383 (421)
T COG1571 364 GRNGFRCKKCGTRARETLIK 383 (421)
T ss_pred CCCCcccccccccCCccccc
Confidence 44489999999998766544
No 188
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=21.82 E-value=37 Score=39.30 Aligned_cols=68 Identities=24% Similarity=0.168 Sum_probs=0.0
Q ss_pred cccccCccccCCCCCCCCCCCCCCccccCCCCC------------------------CCCCccCCcchHHHHhH------
Q 014855 210 LAEESARTITVNPLFSPSQQQPNSSATHMLNFP------------------------SHHHHQLQSQGLQALQL------ 259 (417)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~------------------------~~~~~q~QqQ~qqq~qq------ 259 (417)
.+....+.....+...++.+.+.+.+.++-.+. .++...+|||++||+||
T Consensus 261 ~~~~~a~vt~~~~~~~~q~~Sq~qsHs~Pn~~~~~~~~G~s~s~Sitsta~~~~~~LS~P~~~~~~Q~q~qqq~~~~~~L 340 (1973)
T KOG4407|consen 261 SYPAVAAVTTSTPAGSPQSQSQSQSHSHPNTHHAPSLHGGSRSGSITSTASGGITVLSQPFYPQQQQQQQQQQQHRHPAL 340 (1973)
T ss_pred eccceeeEEecCCCCCchhhhhcccCCCCCcCccccccccccccceEeeccCCcccccccCchhhhhhhhhhhcCCCccc
Q ss_pred -----------------Hhhhhhcc--cccccCCCCC
Q 014855 260 -----------------QAVKIEDN--NQQHHIPPWL 277 (417)
Q Consensus 260 -----------------Q~q~qqQQ--qqqq~~p~~~ 277 (417)
|+++++|. |||++.-.|.
T Consensus 341 ~~~~s~~~~~D~~~~~Rq~q~qq~H~~~qq~QH~q~~ 377 (1973)
T KOG4407|consen 341 TGGSSSIDFGDMAHGLRQHQQQQQHLYQQQQQHHQFM 377 (1973)
T ss_pred ccCCCcccccchhhhhHHHHHhccccchhHHHHHHHH
No 189
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=21.82 E-value=59 Score=22.92 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCC
Q 014855 80 TNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE 128 (417)
Q Consensus 80 ~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~ 128 (417)
..+..|+. |.+.+. +..|..|....- ..++..|..
T Consensus 7 ~~~v~C~~~cc~~~i~-r~~l~~H~~~~C-------------~~~~v~C~~ 43 (60)
T PF02176_consen 7 FRPVPCPNGCCNEMIP-RKELDDHLENEC-------------PKRPVPCPY 43 (60)
T ss_dssp TSEEE-TT--S-BEEE-CCCHHHHHHTTS-------------TTSEEE-SS
T ss_pred CCEeeCCCCCccccee-HHHHHHHHHccC-------------CCCcEECCC
Confidence 45678988 555555 567999988544 467778888
No 190
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=21.39 E-value=88 Score=30.98 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=21.0
Q ss_pred CCCceecccccccccChHHHHHHHHhc
Q 014855 79 ATNRFLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
....|.|++|++.=.+...|..|...-
T Consensus 76 ~~qSftCPyC~~~Gfte~~f~~Hv~s~ 102 (381)
T KOG1280|consen 76 DPQSFTCPYCGIMGFTERQFGTHVLSQ 102 (381)
T ss_pred ccccccCCcccccccchhHHHHHhhhc
Confidence 344799999999888888888886543
No 191
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=21.05 E-value=66 Score=21.02 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=9.3
Q ss_pred CceecccccccccChH--HHHHHHH
Q 014855 81 NRFLCEICNKGFQRDQ--NLQLHRR 103 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~--~L~~H~~ 103 (417)
++|-|+.|...|.... .-+.|.+
T Consensus 2 ~ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 2 PRYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp -S-B-TTT--B-S--SHHHHHHHT-
T ss_pred cCeecccccceecCCChHHHHHhhc
Confidence 4689999999994333 3355643
No 192
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=21.00 E-value=1.1e+02 Score=27.69 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=30.2
Q ss_pred ceeccc----ccccccChHHHHHHHHhcCCCcccccccccccCCceeeCCC--CCccCCCCCCcccCHHHHHHHHhhccC
Q 014855 82 RFLCEI----CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHG 155 (417)
Q Consensus 82 ~~~C~~----Cgk~F~~~~~L~~H~~~H~~p~~~~~~~~~~~~~k~~~C~~--C~C~~~~~~k~f~~~~~L~~H~~~H~~ 155 (417)
.|.|.. |.+.|... ....|.+... -+||.|+. .+|.|.+ ....|..|+...|.
T Consensus 14 ~~pC~~~~~GC~~~~~~~-~~~~HE~~C~--------------~~p~~CP~~~~~C~~~G------~~~~l~~Hl~~~H~ 72 (198)
T PF03145_consen 14 KFPCKNAKYGCTETFPYS-EKREHEEECP--------------FRPCSCPFPGSGCDWQG------SYKELLDHLRDKHS 72 (198)
T ss_dssp -EE-CCGGGT---EE-GG-GHHHHHHT-T--------------TSEEE-SSSSTT---EE------ECCCHHHHHHHHTT
T ss_pred eecCCCCCCCCccccccc-ChhhHhccCC--------------CcCCcCCCCCCCccccC------CHHHHHHHHHHHCC
Confidence 477876 88876554 5677877663 68899999 6663332 23468899887776
Q ss_pred CC
Q 014855 156 EK 157 (417)
Q Consensus 156 ek 157 (417)
..
T Consensus 73 ~~ 74 (198)
T PF03145_consen 73 WN 74 (198)
T ss_dssp TS
T ss_pred Cc
Confidence 53
No 193
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=20.82 E-value=67 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=22.3
Q ss_pred hhccCCCccccCcCC-ccccChhhHHHHHHH
Q 014855 151 SRKHGEKKWKCEKCS-KKYAVQSDWKAHSKI 180 (417)
Q Consensus 151 ~~H~~ekp~~C~~C~-k~F~~~~~L~~H~~~ 180 (417)
+.|.-.+-|.|.+|| +++.-+..+.+|..-
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~E 424 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFNE 424 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHhHH
Confidence 344456778888888 788888888888654
No 194
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.81 E-value=51 Score=19.67 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=6.9
Q ss_pred ccCcCCcccc
Q 014855 160 KCEKCSKKYA 169 (417)
Q Consensus 160 ~C~~C~k~F~ 169 (417)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 5777777764
No 195
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=20.67 E-value=27 Score=28.11 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=12.1
Q ss_pred CCCceecccccccccC
Q 014855 79 ATNRFLCEICNKGFQR 94 (417)
Q Consensus 79 ~~k~~~C~~Cgk~F~~ 94 (417)
-.+.|.|+.||..-..
T Consensus 19 L~k~FtCp~Cghe~vs 34 (104)
T COG4888 19 LPKTFTCPRCGHEKVS 34 (104)
T ss_pred CCceEecCccCCeeee
Confidence 4678999999976443
No 196
>PTZ00448 hypothetical protein; Provisional
Probab=20.62 E-value=97 Score=31.05 Aligned_cols=25 Identities=28% Similarity=0.576 Sum_probs=21.7
Q ss_pred CceecccccccccChHHHHHHHHhc
Q 014855 81 NRFLCEICNKGFQRDQNLQLHRRGH 105 (417)
Q Consensus 81 k~~~C~~Cgk~F~~~~~L~~H~~~H 105 (417)
..|.|..|+-.|.+....+.|+++-
T Consensus 313 ~~~tC~~C~v~F~~~~~qR~H~KSD 337 (373)
T PTZ00448 313 NMLLCRKCNIQLMDHNAFKQHYRSE 337 (373)
T ss_pred CCccccccccccCCHHHHHHHhhhh
Confidence 3699999999999888889998864
No 197
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=20.25 E-value=43 Score=21.66 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=5.1
Q ss_pred cccCcCCccc
Q 014855 159 WKCEKCSKKY 168 (417)
Q Consensus 159 ~~C~~C~k~F 168 (417)
-+|+.||-.+
T Consensus 22 ~~Cd~cg~~L 31 (36)
T PF05191_consen 22 GVCDNCGGEL 31 (36)
T ss_dssp TBCTTTTEBE
T ss_pred CccCCCCCee
Confidence 4555555443
No 198
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=20.21 E-value=76 Score=33.76 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=9.5
Q ss_pred eccccc-ccccChHHH
Q 014855 84 LCEICN-KGFQRDQNL 98 (417)
Q Consensus 84 ~C~~Cg-k~F~~~~~L 98 (417)
.|+.|+ ..|.....+
T Consensus 20 ~c~vc~gtG~~~~~d~ 35 (715)
T COG1107 20 ECPVCHGTGFSDDFDP 35 (715)
T ss_pred ecccccccccccccCh
Confidence 488885 566655554
Done!