BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014856
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/379 (44%), Positives = 223/379 (58%), Gaps = 37/379 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLA 121
+NYG +PL +QS + +TG+ + V D+EVL R R +T Q A
Sbjct: 3 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 53
Query: 122 TV-------------------KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 162
T+ K ++SK MV++ SL+ E IK AT
Sbjct: 54 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113
Query: 163 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 114 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 168
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 280
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A L
Sbjct: 169 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 228
Query: 281 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 340
AQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D +
Sbjct: 229 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 288
Query: 341 DCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 398
LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 289 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 348
Query: 399 LGDLNTESERKLGQLVLEK 417
DL+TE+E+ LG+LV +K
Sbjct: 349 FEDLSTENEKFLGKLVRDK 367
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/379 (44%), Positives = 223/379 (58%), Gaps = 37/379 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLA 121
+NYG +PL +QS + +TG+ + V D+EVL R R +T Q A
Sbjct: 6 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 56
Query: 122 TV-------------------KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 162
T+ K ++SK MV++ SL+ E IK AT
Sbjct: 57 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 116
Query: 163 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 117 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 171
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 280
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A L
Sbjct: 172 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 231
Query: 281 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 340
AQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D +
Sbjct: 232 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 291
Query: 341 DCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 398
LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 292 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 351
Query: 399 LGDLNTESERKLGQLVLEK 417
DL+TE+E+ LG+LV +K
Sbjct: 352 FEDLSTENEKFLGKLVRDK 370
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 215/386 (55%), Gaps = 57/386 (14%)
Query: 88 SGREWTEVGALNGSLKDQEVLIRGR---------------RVSTVQCLATV-KPDSVSKE 131
+G ++TE+ L ++ ++ V IR R R C A V K +++SKE
Sbjct: 46 TGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKE 105
Query: 132 MVRFVRSLSNEXXXXXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDAS 189
V+F + +S E I+ ATQQ VE+ + + VS A P+ IED +
Sbjct: 106 FVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLT 165
Query: 190 -------RSEAEIEKASK---------EGVQLPR----------------------VNQD 211
+ E +I K + EG L + V+QD
Sbjct: 166 FPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQD 225
Query: 212 TRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL 271
TRL+NR++D+RT+ N IFRIQS +FR+FL S+ FVEIHTPKLI SSEGGS +F +
Sbjct: 226 TRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
Query: 272 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 331
Y + A LAQSPQL+KQM+I GDF +VFE GPVFRAE+S T RHL EF GLD+EMEI +
Sbjct: 286 KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE 345
Query: 332 HYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 391
+Y E +D+++ LF IFD + EL+ + KQYPFE L Y+P LRLT++E ++ML+
Sbjct: 346 NYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP-FLRLTYKEAIEMLRA 404
Query: 392 AGVEIDPLGDLNTESERKLGQLVLEK 417
+G I D T E KLG+L+ K
Sbjct: 405 SGETIGDYDDFTTPQEVKLGELIKAK 430
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 142/252 (56%), Gaps = 22/252 (8%)
Query: 166 EVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 225
E+ +K+ ++RA +TP+ ++ + +AE+ DTRL+NR +D+R
Sbjct: 89 EILPEKIVVLNRA-ETPLPLDPTGKVKAEL---------------DTRLDNRFMDLRRPE 132
Query: 226 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQ 285
IF+I+S V R F F+EIHTPK+IA ++EGG+ +F + Y + A LAQSPQ
Sbjct: 133 VMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQ 192
Query: 286 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345
L+KQ+ + RV+E P+FRAE+ T RHL E +D EM + EVM ++ L
Sbjct: 193 LYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVA 252
Query: 346 TIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLG-DLNT 404
+ + KEL+ + FE + K R+++++ +++L D G EI P G D++T
Sbjct: 253 HAINYVREHNAKELDILN----FELEEPKLPFPRVSYDKALEILGDLGKEI-PWGEDIDT 307
Query: 405 ESERKLGQLVLE 416
E ER LG+ ++E
Sbjct: 308 EGERLLGKYMME 319
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 143/257 (55%), Gaps = 22/257 (8%)
Query: 161 ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
A E+ +K+ ++RA +TP+ ++ + +AE+ DTRLNNR +D
Sbjct: 84 AKLGFEILPEKIVVLNRA-ETPLPLDPTGKVKAEL---------------DTRLNNRFMD 127
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 280
+R IF+I+S V R F F+EIHTPK+IA ++EGG+ +F + Y + A L
Sbjct: 128 LRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFL 187
Query: 281 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 340
A+SPQL+K++ + RV+E P+FRAE+ T RHL E +D EM + EVM +
Sbjct: 188 AESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFL 247
Query: 341 DCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLG 400
+ L + + KEL+ + FE + K R+++++ +++L D G EI P G
Sbjct: 248 ERLVAHAINYVREHNAKELDILN----FELEEPKLPFPRVSYDKALEILGDLGKEI-PWG 302
Query: 401 -DLNTESERKLGQLVLE 416
D++TE ER LG+ ++E
Sbjct: 303 EDIDTEGERLLGKYMME 319
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 22/254 (8%)
Query: 159 KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 218
K A + +E+ +++ +S+A K P+ ++ + + +A+I DTRL RV
Sbjct: 79 KRAPRGIELHAEEITLLSKA-KAPLPLDVSGKVKADI---------------DTRLRERV 122
Query: 219 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSA 278
+D+R Q + +IQS FR+ L E F+EI TPK+IA ++EGG+ +F + Y G+ A
Sbjct: 123 LDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEA 182
Query: 279 CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMD 338
LAQSPQL+K++ + G RVFE P +RAE+S T HL EF +DVEM Y++VM
Sbjct: 183 FLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAF-ADYNDVMQ 240
Query: 339 IVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDP 398
+++ + I ++ K+EL+ + +EP + K RL + E +++L+ G I
Sbjct: 241 LLEKILHNIVKTIKEEGKEELKILN----YEPPEVKIPIKRLKYTEAIEILRSKGYNIKF 296
Query: 399 LGDLNTESERKLGQ 412
D+ T R L +
Sbjct: 297 GDDIGTPELRILNE 310
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 207 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 266
R N DT L R + +R + ++Q+ + FR++L ++F EI TPK++ +EGGS
Sbjct: 102 RANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGS 161
Query: 267 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 326
+F +DY + A LAQSPQL+KQ+ + G F RV+E PV+R E+ +T RHL E+ LDVE
Sbjct: 162 GLFGVDYFEKRAYLAQSPQLYKQI-MVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVE 220
Query: 327 MEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 386
M ++M + + L + + N E+ + +P + RLT E
Sbjct: 221 MGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP----SFPQDIPRLTHAEAK 276
Query: 387 QMLKDAGVEID-PLG-DLNTESERKLGQLVLEK 417
++LK+ E+ P+G DL+ E+ER LG+ E+
Sbjct: 277 RILKE---ELGYPVGQDLSEEAERLLGEYAKER 306
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 5/198 (2%)
Query: 214 LNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY 273
L+ R + IRT I +++ + R++LL + + E+ P L+ G+ EGG+ +F+L Y
Sbjct: 119 LDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKY 178
Query: 274 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 333
+ A L+QS QL+ + +I G +V+ P FRAE S T RHL EF L++E +
Sbjct: 179 FDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLW 237
Query: 334 SEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLK-YKPKTLRLTFEEGVQMLKDA 392
++M + + L + + KKE+E LK +P R++++E + +L+
Sbjct: 238 -DIMKVEEELVSYMVQRTLELRKKEIEMFRDD--LTTLKNTEPPFPRISYDEAIDILQSK 294
Query: 393 GVEIDPLGDLNTESERKL 410
GV ++ DL + ER L
Sbjct: 295 GVNVEWGDDLGADEERVL 312
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 208 VNQDT----RLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 263
+N+D+ ++ NR I IR+ Q + +++S++ FR++ +F EI P ++ E
Sbjct: 130 INKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE 189
Query: 264 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 323
GGS +F+L Y + A L QS QL+ + S+ G+ F +RAE S T RHL E+ L
Sbjct: 190 GGSTLFKLQYFNEPAYLTQSSQLYLE-SVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHL 248
Query: 324 DVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 383
+ E+ + ++++ ++ L T+ D NV + + K P L +P R+T+
Sbjct: 249 EAELPFIS-FEDLLNHLEDLVCTVID---NVMAVHGDKIRKMNPHLKLPTRPFK-RMTYA 303
Query: 384 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417
+ ++ D G+ LN + + G+ + EK
Sbjct: 304 DAIKYCNDHGI-------LNKDKPFEYGEDISEK 330
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 211 DTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFR 270
D L+NR + IR + R+++ R+ + +VE+ P L+ EGGS +F
Sbjct: 113 DKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFN 172
Query: 271 LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 330
LDY G+ + L QS QL+ + I G VF +RAE S T RHL E+ ++ E
Sbjct: 173 LDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFI 231
Query: 331 KHYSEVMDIVDCLFVTIFDSL--NNVCKKELEAVAKQY--PFEPLKYKPKTLRLTFEEGV 386
++M+ ++ L D L + KK LE + ++ P P LR+ +++ +
Sbjct: 232 T-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPF------LRMEYKDAI 284
Query: 387 QMLKDAGVE 395
+ L++ VE
Sbjct: 285 KWLQEHNVE 293
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 211 DTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFR 270
D L+NR + IR + R+++ R+ + +VE+ P L+ EGGS +F
Sbjct: 115 DKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFN 174
Query: 271 LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 330
LDY G+ + L QS QL+ + I G VF +RAE S T RHL E+ ++ E
Sbjct: 175 LDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFI 233
Query: 331 KHYSEVMDIVDCLFVTIFDSL--NNVCKKELEAVAKQY--PFEPLKYKPKTLRLTFEEGV 386
++M+ ++ L D L + KK LE + ++ P P LR+ +++ +
Sbjct: 234 T-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPF------LRMEYKDAI 286
Query: 387 QMLKDAGVE 395
+ L++ VE
Sbjct: 287 KWLQEHNVE 295
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 161 ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
AT ++EV L ++RA P+ + EA RL R +D
Sbjct: 88 ATGEIEVLASSLTIINRADVLPLDSNHVNTEEA-------------------RLKYRYLD 128
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVF---RLDYKGQS 277
+R + ++++ ++ R+F+ F++I TP L + EG R+ +KG+
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRV-HKGKF 187
Query: 278 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 326
L QSPQL KQ+ + F R ++ FR ED R EFT +DVE
Sbjct: 188 YALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVE 235
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 161 ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
AT ++EV L ++RA P+ + EA RL R +D
Sbjct: 88 ATGEIEVLASSLTIINRADVLPLDSNHVNTEEA-------------------RLKYRYLD 128
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVF---RLDYKGQS 277
+R + ++++ ++ R+F+ F++I TP L + EG R+ +KG+
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRV-HKGKF 187
Query: 278 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 326
L QSPQL KQ+ + F R ++ FR ED R EFT +DVE
Sbjct: 188 YALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVE 235
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 161 ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
AT +VEV++ L ++ A P ++ R G + +++ RL R +D
Sbjct: 86 ATGRVEVELSALEVLAEAKTPPFPVDAGWR-----------GEEEKEASEELRLKYRYLD 134
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK---GQS 277
+R Q R++ +V FL E FV++ TP L + EG F + Y+ G
Sbjct: 135 LRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRHEPGLF 193
Query: 278 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVM 337
L QSPQL KQM + R F+ FR ED R +FT LD+EM + +V+
Sbjct: 194 YALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVE-VEDVL 251
Query: 338 DIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYK 374
++ + L +F +E V PF L Y+
Sbjct: 252 ELNERLMAHVF--------REALGVELPLPFPRLSYE 280
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 159 KGATQQVEVQIKKLYCVSRAAKTPITIED-ASRSEAEIEKASKEGVQLPRVNQDTRLNNR 217
K T ++E+++K ++ K P I++ ++EA RL R
Sbjct: 94 KMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEA------------------LRLQYR 135
Query: 218 VIDIRTLANQGIFRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDYK-- 274
+D+R+ Q R++SQ+ R++L + FV+I TP L + GG+ F + +
Sbjct: 136 YLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFLVPSREP 194
Query: 275 GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 327
G+ L QSPQ KQ+ + G R F+ +R E S R EFT +D+EM
Sbjct: 195 GKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEM 246
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 209 NQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSEGG 265
+Q+ R R +D I ++ F+++SQ+ + RQF+++ F+E+ TP ++I G +
Sbjct: 161 DQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAAR 220
Query: 266 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 325
+ + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 221 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMMEL 279
Query: 326 EMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQY--PFEPL-------KYKPK 376
M Y +++++ + LF T+ + + V + PFE L KY+P+
Sbjct: 280 YMAYAD-YKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPE 338
Query: 377 T 377
T
Sbjct: 339 T 339
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 209 NQDTRLNNRVIDIRTLAN---QGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSE 263
+Q+ R R +D+ +AN + F ++S++ RQF+++ F+E+ TP ++I G +
Sbjct: 161 DQEVRYRQRYLDL--IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGAS 218
Query: 264 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 323
+ + L +P+L+ + + G F RVFE FR E + RH EFT +
Sbjct: 219 ARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMM 277
Query: 324 DVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQY--PFEPL-------KYK 374
++ M Y +++++ + LF T+ + K + PFE L KY+
Sbjct: 278 ELYMAYAD-YHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR 336
Query: 375 PKT 377
P+T
Sbjct: 337 PET 339
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 18/186 (9%)
Query: 208 VNQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEG 264
+Q+TR R +D I T + FR +++ R+F+ +F+E+ TP L I G +
Sbjct: 181 ADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAA 240
Query: 265 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 324
V + L +P+L+ + I G F RVFE FR E + RH EFT
Sbjct: 241 KPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNE-GVSPRHNPEFT--- 296
Query: 325 VEMEIKKHYSE---VMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 381
ME Y++ +MD + L + L QY L RLT
Sbjct: 297 -MMEFYAAYTDYRWLMDFTERL-------IRQAAVDALGTATIQYQGRELDLAQPFHRLT 348
Query: 382 FEEGVQ 387
+ +Q
Sbjct: 349 ITQAIQ 354
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 209 NQDTRLNNRVIDIRTLANQGI---FRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSE 263
+++TR R +D+ + N + F I+S++ R FL F+EI TP +I G +
Sbjct: 154 DKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAV 211
Query: 264 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 323
+ + + + +P+L+ +M + G RV+E G FR E H EFT
Sbjct: 212 AKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE-GIDLTHNPEFTTC 270
Query: 324 DVEMEIKKHYSEVMDIVD 341
+ M Y ++M+I +
Sbjct: 271 EFYMAYAD-YHDLMEITE 287
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 209 NQDTRLNNRVIDIRTLANQGI---FRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSE 263
+++TR R +D+ + N + F I+S++ R FL F+EI TP +I G +
Sbjct: 154 DKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAV 211
Query: 264 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 323
+ + + + +P+L+ +M + G RV+E G FR E H EFT
Sbjct: 212 AKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE-GIDLTHNPEFTTC 270
Query: 324 DVEMEIKKHYSEVMDIVD 341
+ M Y ++M+I +
Sbjct: 271 EFYMAYAD-YHDLMEITE 287
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 30/207 (14%)
Query: 213 RLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVF 269
R R +D I ++ F +S + R++L S ++E+ TP + +AG + +
Sbjct: 156 RYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT 215
Query: 270 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 329
+ + + + +LH + I G +V+E G VFR E T RH EFT L++ E
Sbjct: 216 HHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIST-RHNPEFTMLEL-YEA 273
Query: 330 KKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF------- 382
+ ++M + + L + ++ + L QY + P+ RL
Sbjct: 274 YADFRDIMKLTENL-------IAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEY 326
Query: 383 -----------EEGVQMLKDAGVEIDP 398
EE ++ K+ GVE+ P
Sbjct: 327 VGVDFWRQMSDEEARELAKEHGVEVAP 353
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 271 LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEME 328
+D G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 VDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIE 122
Query: 329 IKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYP 367
K +VM +++ L +F +K E +++P
Sbjct: 123 GAKM-KDVMRLIEELIYGLF-------RKAEEWTGREFP 153
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 25/171 (14%)
Query: 232 IQSQVGNIFRQFLLSENF-------VEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSP 284
IQ+++ F + E F + T L + G ++ G L S
Sbjct: 17 IQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSM 76
Query: 285 QLHKQMSICGDFGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDC 342
LHKQ++I ++F P R E RH EFT LD E+E + ++M +++
Sbjct: 77 ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE-RAKMEDIMRLIER 135
Query: 343 LFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 393
L +F +E PKT R E ++L++ G
Sbjct: 136 LVYGLFRKAEEWTGREF---------------PKTKRFEVFEYSEVLEEFG 171
>pdb|3NKU|A Chain A, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3NKU|B Chain B, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 213
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 347 IFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 394
+FD+LNN+C++ A + YP +P+ P L T ++ LKD V
Sbjct: 124 VFDALNNLCQRIFTASNQIYP-DPIGINPSRLIGTPDDLFGXLKDGXV 170
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 238 NIFRQFL----LSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMS 291
N F +F L+ EI TP + S G +F +L Q + PQL ++S
Sbjct: 66 NWFNEFTSFKELTVPIAEIWTPDIFIFDSVGAPEIFSDKLARVSQDGTVTYVPQLKVRLS 125
Query: 292 ICGDFGRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDS 350
C ETG + S+TH E+ + +D+ D T F
Sbjct: 126 -CPLADLKLETGVTCSLKSGSWTHST----------QELTLEVNAKVDLGDYASDTRFQL 174
Query: 351 LNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 382
LN + KQYP P Y+ TL TF
Sbjct: 175 LNAT----QQVNRKQYPCCPETYEDTTLSFTF 202
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 274 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 333
+G + L SP+ H + + G VF+ FR E+ H H EFT L+ + HY
Sbjct: 68 QGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRH-HNPEFTMLEW---YRPHY 123
Query: 334 S--EVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLR 379
+M+ VD L + D +A + +PL LR
Sbjct: 124 DMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLR 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,981,050
Number of Sequences: 62578
Number of extensions: 367899
Number of successful extensions: 1038
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 34
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)